Query 023291
Match_columns 284
No_of_seqs 301 out of 1553
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.7 9.7E-19 3.3E-23 133.1 5.9 61 61-121 16-76 (80)
2 2kt0_A Nanog, homeobox protein 99.7 1.3E-18 4.5E-23 133.1 6.1 62 60-121 20-81 (84)
3 2da3_A Alpha-fetoprotein enhan 99.7 9.8E-19 3.3E-23 132.4 5.2 61 61-121 16-76 (80)
4 2vi6_A Homeobox protein nanog; 99.7 5.6E-19 1.9E-23 128.1 3.6 60 62-121 3-62 (62)
5 2h1k_A IPF-1, pancreatic and d 99.7 1E-18 3.6E-23 127.2 4.8 60 62-121 3-62 (63)
6 2cue_A Paired box protein PAX6 99.7 2.2E-18 7.6E-23 131.1 6.6 65 60-124 5-69 (80)
7 2cra_A Homeobox protein HOX-B1 99.7 9.5E-19 3.2E-23 129.9 4.1 62 60-121 5-66 (70)
8 2dmu_A Homeobox protein goosec 99.7 2.1E-18 7.1E-23 127.9 5.9 62 60-121 5-66 (70)
9 1nk2_P Homeobox protein VND; h 99.7 2.6E-18 9E-23 129.8 6.4 63 62-124 9-71 (77)
10 1puf_A HOX-1.7, homeobox prote 99.7 3.9E-18 1.3E-22 128.9 7.3 64 60-123 11-74 (77)
11 2e1o_A Homeobox protein PRH; D 99.7 2.5E-18 8.5E-23 127.6 5.6 61 61-121 6-66 (70)
12 2dmq_A LIM/homeobox protein LH 99.7 2E-18 6.9E-23 130.9 5.2 63 61-123 6-68 (80)
13 3a01_A Homeodomain-containing 99.7 2.8E-18 9.5E-23 134.5 6.1 66 61-126 16-81 (93)
14 2hdd_A Protein (engrailed home 99.7 1.6E-18 5.3E-23 125.3 4.2 57 63-119 4-60 (61)
15 1ig7_A Homeotic protein MSX-1; 99.7 2.3E-18 7.9E-23 123.0 5.0 57 63-119 1-57 (58)
16 2da2_A Alpha-fetoprotein enhan 99.7 1.8E-18 6E-23 128.2 4.3 62 60-121 5-66 (70)
17 2r5y_A Homeotic protein sex co 99.7 2.2E-18 7.6E-23 133.3 4.8 62 60-121 26-87 (88)
18 2ecc_A Homeobox and leucine zi 99.7 2E-18 6.8E-23 131.5 4.4 60 64-123 5-64 (76)
19 2dms_A Homeobox protein OTX2; 99.7 2.9E-18 9.9E-23 130.3 5.3 63 60-122 5-67 (80)
20 2da1_A Alpha-fetoprotein enhan 99.7 2.6E-18 8.7E-23 127.3 4.4 61 61-121 6-66 (70)
21 1ahd_P Antennapedia protein mu 99.7 2.7E-18 9.1E-23 127.0 4.4 59 63-121 3-61 (68)
22 2da5_A Zinc fingers and homeob 99.7 3.3E-18 1.1E-22 128.9 5.0 59 63-121 8-66 (75)
23 1zq3_P PRD-4, homeotic bicoid 99.7 3.9E-18 1.3E-22 126.0 5.2 61 63-123 3-63 (68)
24 2djn_A Homeobox protein DLX-5; 99.7 2.2E-18 7.6E-23 127.9 3.5 62 60-121 5-66 (70)
25 1uhs_A HOP, homeodomain only p 99.7 5E-18 1.7E-22 126.6 5.3 58 64-121 3-61 (72)
26 1fjl_A Paired protein; DNA-bin 99.7 5.9E-18 2E-22 128.9 5.8 61 61-121 17-77 (81)
27 1jgg_A Segmentation protein EV 99.7 4.3E-18 1.5E-22 122.6 4.7 58 63-120 2-59 (60)
28 1yz8_P Pituitary homeobox 2; D 99.7 2E-18 6.7E-23 127.5 3.0 61 62-122 3-63 (68)
29 2l7z_A Homeobox protein HOX-A1 99.7 6.8E-18 2.3E-22 126.4 5.9 61 61-121 6-66 (73)
30 1wh5_A ZF-HD homeobox family p 99.7 3.6E-18 1.2E-22 130.7 4.4 59 61-119 16-78 (80)
31 1bw5_A ISL-1HD, insulin gene e 99.7 2.6E-18 8.7E-23 126.0 3.3 59 63-121 4-62 (66)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 5.9E-18 2E-22 125.0 5.1 60 63-122 3-62 (68)
33 1b8i_A Ultrabithorax, protein 99.7 6E-18 2E-22 129.3 5.0 62 60-121 18-79 (81)
34 2hi3_A Homeodomain-only protei 99.7 7.6E-18 2.6E-22 126.1 5.4 59 63-121 3-62 (73)
35 2k40_A Homeobox expressed in E 99.7 2.5E-18 8.7E-23 126.4 2.8 61 63-123 2-62 (67)
36 3a02_A Homeobox protein arista 99.7 4.9E-18 1.7E-22 122.3 3.9 56 66-121 3-58 (60)
37 3rkq_A Homeobox protein NKX-2. 99.7 7.2E-18 2.5E-22 119.8 4.6 57 62-118 2-58 (58)
38 3a03_A T-cell leukemia homeobo 99.7 7.4E-18 2.5E-22 120.0 4.5 54 67-120 2-55 (56)
39 3nar_A ZHX1, zinc fingers and 99.7 5.2E-18 1.8E-22 133.4 4.1 64 61-124 24-87 (96)
40 2m0c_A Homeobox protein arista 99.7 7.9E-18 2.7E-22 125.8 4.8 63 60-122 7-69 (75)
41 2da4_A Hypothetical protein DK 99.7 4.8E-18 1.6E-22 129.1 3.1 61 61-121 7-71 (80)
42 2ecb_A Zinc fingers and homeob 99.7 7.1E-18 2.4E-22 131.9 4.0 60 64-123 13-72 (89)
43 1wh7_A ZF-HD homeobox family p 99.7 7.1E-18 2.4E-22 129.3 3.8 58 61-119 16-78 (80)
44 2dn0_A Zinc fingers and homeob 99.7 1E-17 3.5E-22 126.2 3.9 58 64-121 10-67 (76)
45 2ly9_A Zinc fingers and homeob 99.7 1.7E-17 5.7E-22 124.1 5.0 61 62-122 6-66 (74)
46 1akh_A Protein (mating-type pr 99.7 1.1E-17 3.6E-22 120.7 3.6 57 62-118 5-61 (61)
47 1b72_A Protein (homeobox prote 99.7 1.5E-17 5.1E-22 130.9 4.5 62 61-122 33-94 (97)
48 1k61_A Mating-type protein alp 99.7 2.2E-17 7.5E-22 118.8 4.6 56 65-120 1-59 (60)
49 1x2n_A Homeobox protein pknox1 99.7 3.7E-17 1.3E-21 122.0 5.6 63 60-122 5-70 (73)
50 2dmp_A Zinc fingers and homeob 99.7 2.4E-17 8.1E-22 128.3 4.5 58 64-121 15-72 (89)
51 1puf_B PRE-B-cell leukemia tra 99.7 2.6E-17 8.9E-22 122.9 4.3 61 63-123 2-65 (73)
52 2cqx_A LAG1 longevity assuranc 99.7 8.4E-18 2.9E-22 126.2 1.6 59 63-121 9-68 (72)
53 1le8_B Mating-type protein alp 99.7 3E-17 1E-21 125.9 3.8 62 63-124 3-67 (83)
54 1b72_B Protein (PBX1); homeodo 99.7 5.8E-17 2E-21 124.7 5.4 62 63-124 2-66 (87)
55 2cuf_A FLJ21616 protein; homeo 99.7 8.1E-17 2.8E-21 126.3 5.7 64 60-123 5-83 (95)
56 1du6_A PBX1, homeobox protein 99.6 3.2E-17 1.1E-21 119.4 2.7 58 62-119 3-63 (64)
57 1mnm_C Protein (MAT alpha-2 tr 99.6 7.5E-17 2.6E-21 124.4 4.6 60 60-119 25-87 (87)
58 2l9r_A Homeobox protein NKX-3. 99.6 3.2E-17 1.1E-21 122.5 1.5 56 68-123 10-65 (69)
59 2dmn_A Homeobox protein TGIF2L 99.6 1.5E-16 5.2E-21 122.1 5.3 63 61-123 6-71 (83)
60 3nau_A Zinc fingers and homeob 99.6 1.4E-16 4.7E-21 118.2 4.4 54 68-121 10-63 (66)
61 1au7_A Protein PIT-1, GHF-1; c 99.6 1.3E-16 4.6E-21 134.5 3.8 60 61-120 86-145 (146)
62 1e3o_C Octamer-binding transcr 99.6 1.9E-16 6.6E-21 135.2 3.7 60 61-120 100-159 (160)
63 1x2m_A LAG1 longevity assuranc 99.6 1.3E-16 4.3E-21 117.8 1.8 51 70-120 8-59 (64)
64 2xsd_C POU domain, class 3, tr 99.6 2E-16 6.7E-21 136.0 3.2 62 61-122 98-159 (164)
65 2e19_A Transcription factor 8; 99.6 3.3E-16 1.1E-20 115.0 3.2 54 67-120 8-61 (64)
66 2da6_A Hepatocyte nuclear fact 99.6 9.9E-16 3.4E-20 122.6 6.1 62 61-122 5-87 (102)
67 3d1n_I POU domain, class 6, tr 99.6 5.2E-16 1.8E-20 131.1 4.8 58 62-119 93-150 (151)
68 3l1p_A POU domain, class 5, tr 99.6 9.7E-16 3.3E-20 130.3 3.7 60 61-120 95-154 (155)
69 3k2a_A Homeobox protein MEIS2; 99.6 1.4E-15 4.7E-20 112.5 3.4 58 68-125 4-64 (67)
70 1lfb_A Liver transcription fac 99.5 9.1E-16 3.1E-20 122.0 2.3 61 62-122 9-90 (99)
71 1wi3_A DNA-binding protein SAT 99.5 3.5E-15 1.2E-19 111.3 4.6 57 61-117 6-63 (71)
72 2d5v_A Hepatocyte nuclear fact 99.5 2.3E-15 7.9E-20 128.4 3.4 61 61-121 96-156 (164)
73 2lk2_A Homeobox protein TGIF1; 99.3 5.8E-13 2E-17 104.1 4.6 57 68-124 11-70 (89)
74 1ic8_A Hepatocyte nuclear fact 99.3 2.2E-13 7.7E-18 120.1 2.2 58 62-119 115-193 (194)
75 2da7_A Zinc finger homeobox pr 99.3 5.3E-13 1.8E-17 99.9 3.4 47 71-117 14-60 (71)
76 1mh3_A Maltose binding-A1 home 99.2 1.5E-12 5.1E-17 122.0 2.2 53 66-118 369-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.2 7.5E-12 2.6E-16 112.3 3.4 55 63-117 143-218 (221)
78 2nzz_A Penetratin conjugated G 98.8 2.2E-10 7.7E-15 75.7 -1.2 27 104-130 1-27 (37)
79 2ys9_A Homeobox and leucine zi 92.4 0.054 1.8E-06 40.2 1.9 39 74-112 18-56 (70)
80 1gd2_E Transcription factor PA 85.0 2.7 9.4E-05 30.8 6.5 40 123-162 28-67 (70)
81 2jn6_A Protein CGL2762, transp 81.6 0.8 2.7E-05 34.2 2.5 43 66-112 3-46 (97)
82 1hjb_A Ccaat/enhancer binding 80.6 5 0.00017 30.6 6.7 33 130-162 42-74 (87)
83 1hlv_A CENP-B, major centromer 79.7 1.8 6.3E-05 33.6 4.1 50 64-116 3-52 (131)
84 2glo_A Brinker CG9653-PA; prot 78.9 1.2 4.2E-05 30.4 2.5 45 66-111 3-47 (59)
85 1gu4_A CAAT/enhancer binding p 77.9 3.8 0.00013 30.7 5.1 19 142-160 47-65 (78)
86 1kd8_B GABH BLL, GCN4 acid bas 76.1 5.5 0.00019 25.6 4.7 31 134-164 4-34 (36)
87 2dgc_A Protein (GCN4); basic d 74.7 4.7 0.00016 28.8 4.7 28 135-162 34-61 (63)
88 1t2k_D Cyclic-AMP-dependent tr 74.5 13 0.00044 26.0 7.0 37 125-161 23-59 (61)
89 2oxj_A Hybrid alpha/beta pepti 74.1 5.7 0.0002 25.2 4.4 29 134-162 4-32 (34)
90 1kd8_A GABH AIV, GCN4 acid bas 73.3 5.5 0.00019 25.6 4.2 31 135-165 5-35 (36)
91 3c3g_A Alpha/beta peptide with 73.0 5.3 0.00018 25.2 4.0 28 135-162 4-31 (33)
92 3c3f_A Alpha/beta peptide with 71.6 5.3 0.00018 25.4 3.8 29 134-162 4-32 (34)
93 3m48_A General control protein 69.6 4.6 0.00016 25.6 3.2 28 135-162 4-31 (33)
94 2wt7_B Transcription factor MA 69.5 11 0.00037 29.0 6.0 39 124-162 48-86 (90)
95 2elh_A CG11849-PA, LD40883P; s 68.2 5.3 0.00018 29.3 4.0 43 64-111 18-60 (87)
96 2wt7_A Proto-oncogene protein 68.0 25 0.00084 24.7 7.3 36 126-161 25-60 (63)
97 1ci6_A Transcription factor AT 67.4 26 0.00088 24.7 7.3 38 125-162 24-61 (63)
98 1gd2_E Transcription factor PA 65.7 9.7 0.00033 27.9 4.8 40 119-158 31-70 (70)
99 1jko_C HIN recombinase, DNA-in 63.2 2.1 7.2E-05 27.2 0.7 42 68-114 5-46 (52)
100 1tc3_C Protein (TC3 transposas 63.0 4.7 0.00016 24.9 2.4 40 68-112 5-44 (51)
101 2bni_A General control protein 62.1 7.5 0.00026 24.7 3.1 28 135-162 5-32 (34)
102 2hy6_A General control protein 62.0 9.9 0.00034 24.1 3.6 28 135-162 5-32 (34)
103 1s7o_A Hypothetical UPF0122 pr 61.7 28 0.00096 26.9 7.2 47 68-119 22-68 (113)
104 3hug_A RNA polymerase sigma fa 61.5 7.2 0.00025 28.6 3.6 47 68-119 37-83 (92)
105 2yy0_A C-MYC-binding protein; 61.3 12 0.0004 25.9 4.3 26 138-163 19-44 (53)
106 2yy0_A C-MYC-binding protein; 59.8 11 0.00038 26.0 4.0 31 132-162 20-50 (53)
107 1jnm_A Proto-oncogene C-JUN; B 58.6 15 0.00051 25.7 4.6 33 127-159 25-57 (62)
108 3iv1_A Tumor susceptibility ge 58.6 54 0.0019 24.4 8.3 51 112-162 13-63 (78)
109 2x7l_M HIV REV; nuclear export 58.6 4.8 0.00016 32.3 2.1 34 74-121 15-48 (115)
110 1deb_A APC protein, adenomatou 58.2 22 0.00075 24.6 5.1 37 132-168 4-40 (54)
111 1uo4_A General control protein 56.6 12 0.00041 23.8 3.3 28 135-162 5-32 (34)
112 3lph_A Protein REV; helix-loop 56.5 7.4 0.00025 28.8 2.7 35 74-122 18-52 (72)
113 2jee_A YIIU; FTSZ, septum, coi 55.4 48 0.0016 24.9 7.1 37 124-160 27-70 (81)
114 2o8x_A Probable RNA polymerase 53.1 7.8 0.00027 26.3 2.3 46 68-118 15-60 (70)
115 1xsv_A Hypothetical UPF0122 pr 53.1 31 0.001 26.6 6.1 47 68-119 25-71 (113)
116 1iuf_A Centromere ABP1 protein 52.8 14 0.00049 29.6 4.2 48 63-113 6-60 (144)
117 2jee_A YIIU; FTSZ, septum, coi 52.5 59 0.002 24.4 7.2 46 119-164 15-67 (81)
118 3hnw_A Uncharacterized protein 52.1 71 0.0024 25.9 8.4 45 121-165 86-130 (138)
119 1je8_A Nitrate/nitrite respons 49.6 11 0.00036 27.3 2.7 47 67-119 20-66 (82)
120 1p9i_A Cortexillin I/GCN4 hybr 49.6 23 0.00079 21.5 3.6 25 137-161 5-29 (31)
121 2wq1_A General control protein 47.9 34 0.0012 21.5 4.4 28 135-162 4-31 (33)
122 2wuj_A Septum site-determining 46.6 15 0.00052 25.5 3.0 29 133-161 29-57 (57)
123 1p4w_A RCSB; solution structur 46.5 16 0.00054 27.8 3.3 47 66-118 32-78 (99)
124 1t2k_D Cyclic-AMP-dependent tr 45.6 60 0.002 22.4 6.0 33 130-162 21-53 (61)
125 2rn7_A IS629 ORFA; helix, all 44.9 15 0.00052 27.4 3.0 46 66-111 4-52 (108)
126 3gp4_A Transcriptional regulat 44.6 1.2E+02 0.0041 24.2 8.7 34 66-112 38-71 (142)
127 3mzy_A RNA polymerase sigma-H 44.6 17 0.00058 28.0 3.4 45 68-118 109-153 (164)
128 3c57_A Two component transcrip 44.3 12 0.0004 27.9 2.2 47 68-120 27-73 (95)
129 3i5g_B Myosin regulatory light 43.5 38 0.0013 26.7 5.4 41 64-104 5-50 (153)
130 1dh3_A Transcription factor CR 42.8 45 0.0015 22.9 4.9 29 133-161 24-52 (55)
131 3w03_C DNA repair protein XRCC 42.4 50 0.0017 28.4 6.2 37 126-162 147-183 (184)
132 3oja_A Leucine-rich immune mol 42.3 69 0.0024 30.2 7.9 50 122-171 426-475 (487)
133 1fse_A GERE; helix-turn-helix 41.9 19 0.00065 24.5 3.0 46 67-118 10-55 (74)
134 2rnj_A Response regulator prot 41.5 12 0.00041 27.4 1.9 46 68-119 29-74 (91)
135 1ku3_A Sigma factor SIGA; heli 41.5 17 0.00058 25.3 2.7 50 68-118 10-59 (73)
136 2p7v_B Sigma-70, RNA polymeras 41.4 12 0.00042 25.7 1.8 50 68-118 5-54 (68)
137 3m91_A Proteasome-associated A 40.8 81 0.0028 21.6 5.9 24 138-161 23-46 (51)
138 2r2v_A GCN4 leucine zipper; co 38.7 57 0.0019 20.7 4.4 27 136-162 6-32 (34)
139 1x3u_A Transcriptional regulat 37.2 19 0.00065 25.0 2.3 45 69-119 17-61 (79)
140 1tty_A Sigma-A, RNA polymerase 36.8 19 0.00066 26.1 2.4 51 68-119 18-68 (87)
141 2wt7_A Proto-oncogene protein 36.6 1.1E+02 0.0036 21.3 6.4 32 131-162 23-54 (63)
142 1nlw_A MAD protein, MAX dimeri 36.3 1.3E+02 0.0043 22.1 7.1 30 133-162 49-78 (80)
143 2fxo_A Myosin heavy chain, car 35.4 1.6E+02 0.0053 23.3 7.8 45 119-163 78-122 (129)
144 1ci6_A Transcription factor AT 34.7 1.2E+02 0.004 21.2 6.2 28 133-160 25-52 (63)
145 3m9b_A Proteasome-associated A 33.5 60 0.002 29.3 5.5 30 134-163 64-93 (251)
146 1or7_A Sigma-24, RNA polymeras 33.3 26 0.00088 28.1 2.8 46 69-119 141-186 (194)
147 3oja_B Anopheles plasmodium-re 33.1 1.2E+02 0.004 29.2 7.9 8 152-159 544-551 (597)
148 1wt6_A Myotonin-protein kinase 32.4 1.6E+02 0.0053 22.1 6.7 39 125-163 32-70 (81)
149 1rp3_A RNA polymerase sigma fa 32.2 27 0.00092 28.8 2.8 47 68-119 187-233 (239)
150 1jnm_A Proto-oncogene C-JUN; B 31.8 1.3E+02 0.0043 20.8 7.3 32 131-162 22-53 (62)
151 1gu4_A CAAT/enhancer binding p 31.6 1.5E+02 0.0053 21.7 7.3 45 114-161 29-73 (78)
152 2oto_A M protein; helical coil 31.1 1.9E+02 0.0066 23.3 7.9 48 111-158 23-77 (155)
153 1u78_A TC3 transposase, transp 30.4 33 0.0011 26.1 2.9 41 67-112 5-45 (141)
154 3ulq_B Transcriptional regulat 29.5 31 0.0011 25.5 2.5 44 67-116 28-71 (90)
155 3s4r_A Vimentin; alpha-helix, 29.2 89 0.003 23.6 5.1 39 123-161 55-93 (93)
156 1nkp_B MAX protein, MYC proto- 28.2 1.7E+02 0.0058 21.1 7.0 24 138-161 54-77 (83)
157 3m91_A Proteasome-associated A 28.0 1.4E+02 0.0049 20.3 6.2 22 141-162 19-40 (51)
158 3he5_B Synzip2; heterodimeric 27.6 1.4E+02 0.0048 19.9 6.5 35 126-160 12-46 (52)
159 2v66_B Nuclear distribution pr 27.0 2.3E+02 0.0079 22.3 7.8 49 117-165 10-62 (111)
160 2v71_A Nuclear distribution pr 25.8 2.5E+02 0.0084 24.1 7.8 48 115-162 61-112 (189)
161 3bdn_A Lambda repressor; repre 25.7 22 0.00076 30.0 1.2 24 91-114 32-55 (236)
162 1go4_E MAD1 (mitotic arrest de 25.4 1.1E+02 0.0036 23.9 4.9 31 133-163 14-44 (100)
163 3lay_A Zinc resistance-associa 25.3 2.6E+02 0.0088 23.5 7.8 17 68-84 67-83 (175)
164 3gpv_A Transcriptional regulat 25.3 1.2E+02 0.004 24.4 5.5 34 66-112 52-85 (148)
165 2k27_A Paired box protein PAX- 25.3 51 0.0017 26.1 3.3 41 67-112 24-64 (159)
166 2lv7_A Calcium-binding protein 25.2 2E+02 0.0069 21.0 7.0 45 66-110 27-78 (100)
167 3oa7_A Head morphogenesis prot 25.1 1.7E+02 0.0057 25.6 6.6 43 126-168 32-74 (206)
168 1dh3_A Transcription factor CR 24.6 83 0.0029 21.5 3.8 28 126-153 24-51 (55)
169 1hjb_A Ccaat/enhancer binding 24.5 1.5E+02 0.005 22.4 5.5 31 133-163 38-68 (87)
170 2x48_A CAG38821; archeal virus 24.3 32 0.0011 22.2 1.6 36 71-111 18-53 (55)
171 3m9b_A Proteasome-associated A 23.9 1.1E+02 0.0038 27.5 5.5 39 121-159 58-96 (251)
172 2dfs_A Myosin-5A; myosin-V, in 23.5 1.7E+02 0.0057 31.4 7.6 31 136-166 1021-1051(1080)
173 3a5t_A Transcription factor MA 23.4 3.5 0.00012 32.7 -4.0 36 125-160 59-94 (107)
174 2q0o_A Probable transcriptiona 23.4 43 0.0015 28.4 2.6 47 66-118 173-219 (236)
175 3vmx_A Voltage-gated hydrogen 23.4 1.8E+02 0.0061 19.7 6.2 37 125-161 5-41 (48)
176 3fmy_A HTH-type transcriptiona 23.2 48 0.0017 22.9 2.4 41 68-115 10-50 (73)
177 2kvr_A Ubiquitin carboxyl-term 22.9 40 0.0014 27.1 2.1 23 92-114 72-94 (130)
178 2xi8_A Putative transcription 22.4 17 0.00057 23.9 -0.2 23 92-114 17-39 (66)
179 2ec3_A Fibronectin; complement 22.4 66 0.0023 23.4 3.0 26 207-232 2-27 (68)
180 1u78_A TC3 transposase, transp 22.0 60 0.0021 24.5 3.0 45 67-115 59-105 (141)
181 1pdn_C Protein (PRD paired); p 21.9 61 0.0021 23.8 2.9 41 67-112 16-56 (128)
182 2r1j_L Repressor protein C2; p 21.4 18 0.00062 23.8 -0.2 24 92-115 21-44 (68)
183 1r8e_A Multidrug-efflux transp 21.3 1E+02 0.0035 26.4 4.7 34 67-113 43-76 (278)
184 1no4_A Late, head morphogenesi 21.2 2.1E+02 0.0071 21.5 5.6 29 129-157 31-59 (97)
185 3oja_B Anopheles plasmodium-re 21.1 2.9E+02 0.0099 26.3 8.3 32 130-161 529-560 (597)
186 3bd1_A CRO protein; transcript 20.9 20 0.00067 25.1 -0.1 23 92-114 14-36 (79)
187 1no4_A Late, head morphogenesi 20.8 2.7E+02 0.0093 20.9 6.9 48 121-168 30-77 (97)
188 3o9x_A Uncharacterized HTH-typ 20.8 53 0.0018 25.2 2.4 40 69-115 71-110 (133)
189 3fiw_A Putative TETR-family tr 20.8 44 0.0015 27.6 2.1 49 67-116 23-72 (211)
190 3hnw_A Uncharacterized protein 20.5 3.4E+02 0.011 21.8 7.9 39 124-162 82-120 (138)
191 2jpc_A SSRB; DNA binding prote 20.4 21 0.00073 23.5 -0.0 28 92-119 16-43 (61)
192 3clo_A Transcriptional regulat 20.1 74 0.0025 27.4 3.5 48 67-120 196-243 (258)
193 1nkp_A C-MYC, MYC proto-oncoge 20.1 1.2E+02 0.004 22.6 4.1 33 126-158 54-86 (88)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.7e-19 Score=133.10 Aligned_cols=61 Identities=36% Similarity=0.553 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 3455566799999999999999999999999999999999999999999999999999864
No 2
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=133.15 Aligned_cols=62 Identities=26% Similarity=0.427 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
...+++|++||..|+.+||..|..++||+..++..||..|||+++||+|||||||+|+|+.+
T Consensus 20 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 20 VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34555666799999999999999999999999999999999999999999999999999865
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.74 E-value=9.8e-19 Score=132.39 Aligned_cols=61 Identities=28% Similarity=0.467 Sum_probs=56.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
..+++|++||..|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+++
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3455666799999999999999999999999999999999999999999999999999865
No 4
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=5.6e-19 Score=128.09 Aligned_cols=60 Identities=27% Similarity=0.423 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
.+++|+.||..|+..||..|..++||+..++.+||..|||++++|++||||||+|+|++|
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 345667799999999999999999999999999999999999999999999999999864
No 5
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.74 E-value=1e-18 Score=127.16 Aligned_cols=60 Identities=33% Similarity=0.572 Sum_probs=55.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
.+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+.+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 456677899999999999999999999999999999999999999999999999999853
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.2e-18 Score=131.11 Aligned_cols=65 Identities=32% Similarity=0.572 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 124 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~~ 124 (284)
...+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+.+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 34556677899999999999999999999999999999999999999999999999999976444
No 7
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=9.5e-19 Score=129.88 Aligned_cols=62 Identities=24% Similarity=0.467 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
...+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34556677899999999999999999999999999999999999999999999999999864
No 8
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=127.90 Aligned_cols=62 Identities=32% Similarity=0.574 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
...+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34556677899999999999999999999999999999999999999999999999999864
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.73 E-value=2.6e-18 Score=129.82 Aligned_cols=63 Identities=32% Similarity=0.482 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 124 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~~ 124 (284)
.+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+.+...
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 445566799999999999999999999999999999999999999999999999999977554
No 10
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.73 E-value=3.9e-18 Score=128.86 Aligned_cols=64 Identities=34% Similarity=0.470 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 123 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 123 (284)
...+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+....
T Consensus 11 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 3455667779999999999999999999999999999999999999999999999999987643
No 11
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.5e-18 Score=127.61 Aligned_cols=61 Identities=41% Similarity=0.665 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3456677899999999999999999999999999999999999999999999999999864
No 12
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2e-18 Score=130.94 Aligned_cols=63 Identities=27% Similarity=0.472 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 123 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 123 (284)
..+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|++...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 455667789999999999999999999999999999999999999999999999999997644
No 13
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.73 E-value=2.8e-18 Score=134.50 Aligned_cols=66 Identities=32% Similarity=0.544 Sum_probs=58.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDY 126 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~~~~ 126 (284)
..+++|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...+...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~ 81 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEERE 81 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHH
Confidence 345566679999999999999999999999999999999999999999999999999998755533
No 14
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.73 E-value=1.6e-18 Score=125.35 Aligned_cols=57 Identities=32% Similarity=0.634 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
+++|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 4 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 4 KRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ---CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 456777999999999999999999999999999999999999999999999999997
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=2.3e-18 Score=122.99 Aligned_cols=57 Identities=32% Similarity=0.547 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
+++|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356778999999999999999999999999999999999999999999999999987
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=128.15 Aligned_cols=62 Identities=27% Similarity=0.428 Sum_probs=57.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
...+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 34556677899999999999999999999999999999999999999999999999999864
No 17
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.72 E-value=2.2e-18 Score=133.33 Aligned_cols=62 Identities=34% Similarity=0.587 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
...+++|++||..|+..||..|..++||+..+|.+||..|||+++||++||||||+|+|+.+
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 34556677799999999999999999999999999999999999999999999999999864
No 18
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=2e-18 Score=131.49 Aligned_cols=60 Identities=27% Similarity=0.355 Sum_probs=56.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHH
Q 023291 64 EKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 123 (284)
Q Consensus 64 rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 123 (284)
.+|++||.+|+.+||..|..++||+..+|.+||..+||+++||++||||||+|+|+.++.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999999987643
No 19
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=2.9e-18 Score=130.35 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQL 122 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~ 122 (284)
...+++|++||..|+.+||..|..++||+..++.+||..|||++++|++||||||+|+|+.+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 345566778999999999999999999999999999999999999999999999999998764
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-18 Score=127.28 Aligned_cols=61 Identities=23% Similarity=0.419 Sum_probs=56.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
..+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 4556677799999999999999999999999999999999999999999999999999864
No 21
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.72 E-value=2.7e-18 Score=127.01 Aligned_cols=59 Identities=36% Similarity=0.611 Sum_probs=55.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 45667799999999999999999999999999999999999999999999999999875
No 22
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-18 Score=128.87 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 45677899999999999999999999999999999999999999999999999999865
No 23
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.72 E-value=3.9e-18 Score=125.98 Aligned_cols=61 Identities=33% Similarity=0.508 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 123 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 123 (284)
+++|++||..|+..||..|..++||+..++..||..|||++++|++||||||+|+|+....
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp SCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 4567779999999999999999999999999999999999999999999999999987643
No 24
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-18 Score=127.87 Aligned_cols=62 Identities=27% Similarity=0.469 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
...+++|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 34556677899999999999999999999999999999999999999999999999999854
No 25
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=5e-18 Score=126.62 Aligned_cols=58 Identities=29% Similarity=0.576 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 64 EKKRRLTAEQVHLLEKSFEA-ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 64 rkRrRfT~~Ql~~LE~~F~~-~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
++|++||..|+..||..|.. ++||+..++.+||..|||+++||++||||||+|+|+.+
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 56778999999999999996 99999999999999999999999999999999999865
No 26
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=5.9e-18 Score=128.93 Aligned_cols=61 Identities=30% Similarity=0.535 Sum_probs=56.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
..+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 3455666799999999999999999999999999999999999999999999999999865
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=4.3e-18 Score=122.65 Aligned_cols=58 Identities=36% Similarity=0.542 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krk 120 (284)
+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4567789999999999999999999999999999999999999999999999999974
No 28
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.71 E-value=2e-18 Score=127.49 Aligned_cols=61 Identities=26% Similarity=0.551 Sum_probs=56.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQL 122 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~ 122 (284)
.+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+.+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 4566777999999999999999999999999999999999999999999999999998753
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.71 E-value=6.8e-18 Score=126.43 Aligned_cols=61 Identities=26% Similarity=0.463 Sum_probs=56.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
..+++|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 3456677799999999999999999999999999999999999999999999999999864
No 30
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.71 E-value=3.6e-18 Score=130.68 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=54.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEA----ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~----~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
..+++|+.||..|+..||..|+. ++||+..+|.+||..|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 34556667999999999999999 999999999999999999999999999999999885
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=2.6e-18 Score=126.04 Aligned_cols=59 Identities=32% Similarity=0.564 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
+++|++||..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+.+
T Consensus 4 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp SCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 45667799999999999999999999999999999999999999999999999999865
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=5.9e-18 Score=125.03 Aligned_cols=60 Identities=30% Similarity=0.519 Sum_probs=56.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQL 122 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~ 122 (284)
+++|++||..|+..||..|..++||+...+.+||..|||++++|++||||||+|+|+...
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 456677999999999999999999999999999999999999999999999999998753
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.71 E-value=6e-18 Score=129.25 Aligned_cols=62 Identities=32% Similarity=0.482 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
+..+++|++||..|+..||..|..++||+..++.+||..|||++++|++||||||+|+||..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34556677799999999999999999999999999999999999999999999999999864
No 34
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=7.6e-18 Score=126.07 Aligned_cols=59 Identities=27% Similarity=0.526 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEA-ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~-~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
.++|++||..|+.+||..|.. ++||+..++.+||..|||+++||++||||||+|+|+.+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 356778999999999999995 99999999999999999999999999999999999865
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-18 Score=126.41 Aligned_cols=61 Identities=31% Similarity=0.503 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 123 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 123 (284)
+++|++||..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+...+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 4567789999999999999999999999999999999999999999999999999987644
No 36
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.70 E-value=4.9e-18 Score=122.30 Aligned_cols=56 Identities=36% Similarity=0.648 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 66 KRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 66 RrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+.+
T Consensus 3 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp --CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 67899999999999999999999999999999999999999999999999999864
No 37
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=7.2e-18 Score=119.79 Aligned_cols=57 Identities=35% Similarity=0.507 Sum_probs=53.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~K 118 (284)
.+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 345677799999999999999999999999999999999999999999999999975
No 38
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.70 E-value=7.4e-18 Score=120.04 Aligned_cols=54 Identities=35% Similarity=0.642 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHH
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krk 120 (284)
+.||..|+..||..|..++||+..+|.+||..+||+++||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 359999999999999999999999999999999999999999999999999985
No 39
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.70 E-value=5.2e-18 Score=133.44 Aligned_cols=64 Identities=31% Similarity=0.515 Sum_probs=57.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 124 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~~ 124 (284)
..+++|++||..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+.+++-
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 3456677899999999999999999999999999999999999999999999999999976544
No 40
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.70 E-value=7.9e-18 Score=125.77 Aligned_cols=63 Identities=32% Similarity=0.541 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQL 122 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~ 122 (284)
+..++.|++||..|+..||..|..++||+..++.+||..|||++++|++||||||+|+|++..
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 344556677999999999999999999999999999999999999999999999999998653
No 41
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.8e-18 Score=129.15 Aligned_cols=61 Identities=16% Similarity=0.343 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAE----NKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~----~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
..+++|+.||..|+.+||..|..+ +||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 345566679999999999999999 9999999999999999999999999999999999864
No 42
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=7.1e-18 Score=131.94 Aligned_cols=60 Identities=27% Similarity=0.420 Sum_probs=55.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHH
Q 023291 64 EKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 123 (284)
Q Consensus 64 rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 123 (284)
++.++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|||++...
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~ 72 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 72 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSC
T ss_pred hhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHH
Confidence 345589999999999999999999999999999999999999999999999999986533
No 43
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.69 E-value=7.1e-18 Score=129.26 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=53.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEA-----ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~-----~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
..+++|+.||..|+..|| .|.. ++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345566679999999999 7999 999999999999999999999999999999999885
No 44
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1e-17 Score=126.25 Aligned_cols=58 Identities=28% Similarity=0.386 Sum_probs=55.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 64 EKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 64 rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
+.|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+..
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 4577899999999999999999999999999999999999999999999999999865
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-17 Score=124.10 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=56.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQL 122 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~ 122 (284)
.++.|++||..|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+.+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 3456778999999999999999999999999999999999999999999999999998653
No 46
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.68 E-value=1.1e-17 Score=120.66 Aligned_cols=57 Identities=37% Similarity=0.635 Sum_probs=48.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~K 118 (284)
.+++|++||..|+.+||..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 345566799999999999999999999999999999999999999999999999976
No 47
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=1.5e-17 Score=130.93 Aligned_cols=62 Identities=32% Similarity=0.499 Sum_probs=55.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQL 122 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~ 122 (284)
..+++|++||..|+..||..|..++||+..+|.+||..|||+++||++||||||+|+|+...
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 45566777999999999999999999999999999999999999999999999999998754
No 48
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.68 E-value=2.2e-17 Score=118.75 Aligned_cols=56 Identities=32% Similarity=0.450 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHH
Q 023291 65 KKRRLTAEQVHLLEKSFEA---ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 65 kRrRfT~~Ql~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krk 120 (284)
++++||..|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4678999999999999999 9999999999999999999999999999999999874
No 49
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=3.7e-17 Score=122.04 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEA---ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQL 122 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~ 122 (284)
...+++|++|+..|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 345566777999999999999987 999999999999999999999999999999999998654
No 50
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=128.31 Aligned_cols=58 Identities=26% Similarity=0.373 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 64 EKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 64 rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
+++++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|++.
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 4556699999999999999999999999999999999999999999999999999865
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.67 E-value=2.6e-17 Score=122.89 Aligned_cols=61 Identities=31% Similarity=0.499 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSF---EAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 123 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F---~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 123 (284)
+++|++||..|+.+||..| ..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 4667789999999999999 899999999999999999999999999999999999987544
No 52
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=8.4e-18 Score=126.20 Aligned_cols=59 Identities=25% Similarity=0.360 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSF-EAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F-~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
.+++++++..|+..||..| ..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 3556779999999999999 9999999999999999999999999999999999999753
No 53
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.66 E-value=3e-17 Score=125.87 Aligned_cols=62 Identities=31% Similarity=0.435 Sum_probs=56.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEA---ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 124 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~~ 124 (284)
++++++||..|+.+||..|.. ++||+..++.+||..+||+++||++||||||+|+|+.....
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~ 67 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAP 67 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCH
Confidence 455667999999999999999 99999999999999999999999999999999999876444
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.66 E-value=5.8e-17 Score=124.69 Aligned_cols=62 Identities=31% Similarity=0.474 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSF---EAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 124 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F---~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~~ 124 (284)
+++|++|+..|+.+||..| ..++||+..++.+||..+||+++||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 4667789999999999999 8999999999999999999999999999999999999876443
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=8.1e-17 Score=126.28 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------CCCcceeecchhhHHHHHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLG---------------LQPRQVAVWFQNRRARWKTKQLE 123 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~Lg---------------Ls~rqVqvWFQNRRaK~Krkq~~ 123 (284)
...++.|++||..|+.+||..|..++||+..+|.+||..|+ |++.+|++||||||+|+|+++..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 34556667799999999999999999999999999999999 99999999999999999987643
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=3.2e-17 Score=119.35 Aligned_cols=58 Identities=31% Similarity=0.479 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSF---EAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F---~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
.+++|++|+..|+.+||..| ..++||+..++.+||..+||++.||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 34567789999999999999 89999999999999999999999999999999999986
No 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=7.5e-17 Score=124.45 Aligned_cols=60 Identities=32% Similarity=0.448 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 60 EQLPEKKRRLTAEQVHLLEKSFEA---ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 60 ~~~~rkRrRfT~~Ql~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
...+++|++|+..|+.+||..|.. ++||+..+|.+||..+||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 345566777999999999999999 999999999999999999999999999999999873
No 58
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=3.2e-17 Score=122.49 Aligned_cols=56 Identities=41% Similarity=0.618 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 123 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 123 (284)
.+|..|+..||..|..++||+..+|.+||..|||+++||++||||||+|+|+++..
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 48999999999999999999999999999999999999999999999999987643
No 59
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=122.13 Aligned_cols=63 Identities=29% Similarity=0.350 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEA---ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLE 123 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~ 123 (284)
..+++|++|+..|+.+|+..|.. ++||+..+|.+||..+||+++||++||||||+|+|+..++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 34556677999999999999987 5999999999999999999999999999999999886544
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=118.20 Aligned_cols=54 Identities=24% Similarity=0.347 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
.-|..|+..||..|..++||+..++.+||..|||+++||++||||||+|+|+.+
T Consensus 10 ~~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp -CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 367999999999999999999999999999999999999999999999999865
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.62 E-value=1.3e-16 Score=134.49 Aligned_cols=60 Identities=27% Similarity=0.436 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krk 120 (284)
..+++|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+||+
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 344556679999999999999999999999999999999999999999999999999985
No 62
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.61 E-value=1.9e-16 Score=135.19 Aligned_cols=60 Identities=28% Similarity=0.425 Sum_probs=53.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krk 120 (284)
..+++|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 345566679999999999999999999999999999999999999999999999999985
No 63
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.60 E-value=1.3e-16 Score=117.80 Aligned_cols=51 Identities=31% Similarity=0.502 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHH-hhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHH
Q 023291 70 TAEQVHLLEKSF-EAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 70 T~~Ql~~LE~~F-~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krk 120 (284)
.+.|+.+||+.| ..++||+..+|.+||.+|||+++||++||||||+|+|+.
T Consensus 8 ~~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 8 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred CchHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 356899999999 568999999999999999999999999999999999864
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.60 E-value=2e-16 Score=135.98 Aligned_cols=62 Identities=27% Similarity=0.305 Sum_probs=52.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQL 122 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~ 122 (284)
..+++|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+||...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 34555667999999999999999999999999999999999999999999999999998753
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.3e-16 Score=115.02 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHH
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krk 120 (284)
..++..|+..||..|..++||+..+|.+||..|||+++||+|||||||||.++.
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 346799999999999999999999999999999999999999999999987763
No 66
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=9.9e-16 Score=122.60 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh---------------------CCCCcceeecchhhHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKL---------------------GLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~L---------------------gLs~rqVqvWFQNRRaK~Kr 119 (284)
..+++|+.|++.|+.+||..|..++||+..+|++||..| .|++.+|++||||||+|+|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 355666779999999999999999999999999999999 79999999999999999998
Q ss_pred HHH
Q 023291 120 KQL 122 (284)
Q Consensus 120 kq~ 122 (284)
++.
T Consensus 85 ~~~ 87 (102)
T 2da6_A 85 RQK 87 (102)
T ss_dssp HHH
T ss_pred hhH
Confidence 753
No 67
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.59 E-value=5.2e-16 Score=131.14 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
.+++|++||..|+..||..|..++||+..+|.+||..|||+++||++||||||+|+||
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4455666999999999999999999999999999999999999999999999999986
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.56 E-value=9.7e-16 Score=130.30 Aligned_cols=60 Identities=28% Similarity=0.404 Sum_probs=55.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krk 120 (284)
..+++|++||..|+..||..|..++||+..+|.+||..|||+++||+|||||||+|+||.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 455566779999999999999999999999999999999999999999999999999974
No 69
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.4e-15 Score=112.47 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHHHH
Q 023291 68 RLTAEQVHLLEKSFE---AENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLERD 125 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~---~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~~~ 125 (284)
+|+..|+.+|+..|. .++||+..++.+||..+||+++||++||||||+|+|+..+++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999998766553
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.55 E-value=9.1e-16 Score=122.05 Aligned_cols=61 Identities=20% Similarity=0.344 Sum_probs=53.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------hC---CCCcceeecchhhHHHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKK------------------LG---LQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~------------------Lg---Ls~rqVqvWFQNRRaK~Krk 120 (284)
.+++|+.||..|+..||..|..++||+...|.+||.. || |++.+|++||||||+++|++
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k~k 88 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 88 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHHHh
Confidence 3445556999999999999999999999999999999 88 99999999999999999887
Q ss_pred HH
Q 023291 121 QL 122 (284)
Q Consensus 121 q~ 122 (284)
+.
T Consensus 89 ~~ 90 (99)
T 1lfb_A 89 HK 90 (99)
T ss_dssp C-
T ss_pred ch
Confidence 63
No 71
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=3.5e-15 Score=111.33 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=52.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEA-ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARW 117 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~-~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~ 117 (284)
..+|.|+.|+.+|+.+|+..|.. ++||+.+.|..||.+|||++++|+|||||||--.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 45566677999999999999999 9999999999999999999999999999999643
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.53 E-value=2.3e-15 Score=128.43 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=53.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 61 QLPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 61 ~~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
..+++|++||..|+..||..|..++||+..+|.+||..|||+++||++||||||+|+|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 3455666799999999999999999999999999999999999999999999999999764
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.34 E-value=5.8e-13 Score=104.12 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHHHH
Q 023291 68 RLTAEQVHLLEKSFEA---ENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQLER 124 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~---~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~~~ 124 (284)
.|+..++.+|+..|.. ++||+..+|.+||..+||+++||++||+|||+|+++..+++
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 4999999999999987 89999999999999999999999999999999998875544
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.34 E-value=2.2e-13 Score=120.13 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=51.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCCcceeecchhhHHHHHH
Q 023291 62 LPEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLG---------------------LQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 62 ~~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~Lg---------------------Ls~rqVqvWFQNRRaK~Kr 119 (284)
.+|+|+.|+..|+..||+.|..++||+...|.+||..|+ |++.+|++||||||+|.|.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC-
T ss_pred CCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhhc
Confidence 344455599999999999999999999999999999999 9999999999999999875
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=5.3e-13 Score=99.89 Aligned_cols=47 Identities=15% Similarity=0.355 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHH
Q 023291 71 AEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARW 117 (284)
Q Consensus 71 ~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~ 117 (284)
.+|+..|+.+|..+++|+.+++..||..+||+.++|+|||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 56899999999999999999999999999999999999999999853
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.24 E-value=1.5e-12 Score=121.99 Aligned_cols=53 Identities=36% Similarity=0.622 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHH
Q 023291 66 KRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 (284)
Q Consensus 66 RrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~K 118 (284)
++.|+..|+..||+.|..++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45599999999999999999999999999999999999999999999999976
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.18 E-value=7.5e-12 Score=112.30 Aligned_cols=55 Identities=16% Similarity=0.342 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC---------------------CCCcceeecchhhHHHH
Q 023291 63 PEKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLG---------------------LQPRQVAVWFQNRRARW 117 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~Lg---------------------Ls~rqVqvWFQNRRaK~ 117 (284)
+|.|..|++.|+.+||..|..++||+..+|++||..++ |++.+|++||||||++.
T Consensus 143 RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 143 RRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 33344499999999999999999999999999999998 89999999999999864
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.82 E-value=2.2e-10 Score=75.69 Aligned_cols=27 Identities=41% Similarity=1.027 Sum_probs=22.8
Q ss_pred cceeecchhhHHHHHHHHHHHHHHHHH
Q 023291 104 RQVAVWFQNRRARWKTKQLERDYDLLK 130 (284)
Q Consensus 104 rqVqvWFQNRRaK~Krkq~~~~~~~Lk 130 (284)
+||+||||||||||||.+++..++.++
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~ 27 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQ 27 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHH
Confidence 699999999999999999887655544
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.37 E-value=0.054 Score=40.18 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchh
Q 023291 74 VHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQN 112 (284)
Q Consensus 74 l~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQN 112 (284)
.+.|+++|...+.+.......|+.+..|+..||+.||--
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 578999999999999999999999999999999999954
No 80
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=85.00 E-value=2.7 Score=30.85 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 123 ERDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 123 ~~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
++.+..|......|...+..+..+|+.|+.++..|...+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666677777888888888888877664
No 81
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=81.63 E-value=0.8 Score=34.18 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHhCCCCcceeecchh
Q 023291 66 KRRLTAEQVHLLEKSFEAE-NKLEPERKGQLAKKLGLQPRQVAVWFQN 112 (284)
Q Consensus 66 RrRfT~~Ql~~LE~~F~~~-~~P~~~~r~eLA~~LgLs~rqVqvWFQN 112 (284)
|++||.++....-..+... . ....++|..+|+++..|..|.+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHHH
Confidence 3568988865555555322 2 24678999999999999999753
No 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=80.64 E-value=5 Score=30.64 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=16.1
Q ss_pred HHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 130 KSSYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 130 k~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
......|..++..|..+.+.|..|+..|+..|.
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555555555555554443
No 83
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=79.66 E-value=1.8 Score=33.61 Aligned_cols=50 Identities=26% Similarity=0.498 Sum_probs=37.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHH
Q 023291 64 EKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRAR 116 (284)
Q Consensus 64 rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK 116 (284)
++|++||.++...+-..+..+..+. ..+||+.+|++...|..|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 3567799999877777765554443 3478999999999999998776553
No 84
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=78.91 E-value=1.2 Score=30.44 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecch
Q 023291 66 KRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQ 111 (284)
Q Consensus 66 RrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQ 111 (284)
|++|+.+....+...+.. ..+......++|.++|+++..|..|.+
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 456999887666554443 332122367899999999999999975
No 85
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=77.94 E-value=3.8 Score=30.69 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=9.0
Q ss_pred HHHHhhHHHHHHHHHHHHH
Q 023291 142 SLVKENQKLKSEVVSLNEK 160 (284)
Q Consensus 142 sl~~en~~L~~E~~~L~e~ 160 (284)
.|..+|..|+.+|..|+..
T Consensus 47 ~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 47 ELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444443
No 86
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=76.07 E-value=5.5 Score=25.62 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=24.9
Q ss_pred HHHhhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 023291 134 DALLSSYDSLVKENQKLKSEVVSLNEKIEAK 164 (284)
Q Consensus 134 ~~l~s~~~sl~~en~~L~~E~~~L~e~l~~~ 164 (284)
..|....+.|+.+|..|..||.+|++.+...
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 3455666778889999999999999988654
No 87
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=74.70 E-value=4.7 Score=28.80 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=19.4
Q ss_pred HHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 135 ALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 135 ~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.|......|..+|..|..++..|++.+.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556677888888888888887764
No 88
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=74.50 E-value=13 Score=25.96 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=23.8
Q ss_pred HHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 125 DYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 125 ~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
....|......|...+..|..+...|+.|+..|+..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666666666666667777777776666554
No 89
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=74.05 E-value=5.7 Score=25.24 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=23.5
Q ss_pred HHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 134 DALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 134 ~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
..|......|..+|..|+.||.+|++-|.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 34555667889999999999999998764
No 90
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=73.30 E-value=5.5 Score=25.62 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=25.1
Q ss_pred HHhhhhhHHHHhhHHHHHHHHHHHHHHHHHh
Q 023291 135 ALLSSYDSLVKENQKLKSEVVSLNEKIEAKE 165 (284)
Q Consensus 135 ~l~s~~~sl~~en~~L~~E~~~L~e~l~~~e 165 (284)
.|......|..+|..|..||.+|++-+...+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 4555667888999999999999999887654
No 91
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=73.00 E-value=5.3 Score=25.24 Aligned_cols=28 Identities=0% Similarity=0.156 Sum_probs=22.8
Q ss_pred HHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 135 ALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 135 ~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.|....+.|..+|..|..||.+|++-|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3445567888999999999999998775
No 92
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=71.58 E-value=5.3 Score=25.36 Aligned_cols=29 Identities=3% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 134 DALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 134 ~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
..|....+.|..+|..|..||.+|++-|.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34555667888999999999999998765
No 93
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=69.55 E-value=4.6 Score=25.55 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=22.5
Q ss_pred HHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 135 ALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 135 ~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.|....+.|..+|..|+.||.+|++-|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3445667888999999999999998654
No 94
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=69.51 E-value=11 Score=29.03 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=26.8
Q ss_pred HHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 124 RDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 124 ~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.+...|......|...-..|..++..+..|...++.+++
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666667777777777777777777776654
No 95
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=68.23 E-value=5.3 Score=29.31 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecch
Q 023291 64 EKKRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQ 111 (284)
Q Consensus 64 rkRrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQ 111 (284)
+++++|+.++....-..+.. .. ...+||+++|++...|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~-g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHD-GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHC-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 34556999886555555542 22 366899999999999999974
No 96
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=68.01 E-value=25 Score=24.74 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=20.7
Q ss_pred HHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 126 YDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 126 ~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
...|......|...+..|..+-..|+.|+..|+..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555556666666666666655544
No 97
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.37 E-value=26 Score=24.74 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=24.8
Q ss_pred HHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 125 DYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 125 ~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
....|......|...+..|..+...|+.|+..|+.-|.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666677777777777777777766543
No 98
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=65.65 E-value=9.7 Score=27.86 Aligned_cols=40 Identities=25% Similarity=0.216 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHH
Q 023291 119 TKQLERDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLN 158 (284)
Q Consensus 119 rkq~~~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~ 158 (284)
-+.++.....|......+..++..|..++..|..|+..|+
T Consensus 31 i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 31 LKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456777777888888888888888888888888877653
No 99
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=63.22 E-value=2.1 Score=27.18 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRR 114 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRR 114 (284)
.++.++...+...+... ....+||..+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 46676666665555432 2467899999999999999986543
No 100
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=63.00 E-value=4.7 Score=24.93 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchh
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQN 112 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQN 112 (284)
.++..+...+...+... . ...+||+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47787775555555432 2 3678999999999999999854
No 101
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=62.08 E-value=7.5 Score=24.73 Aligned_cols=28 Identities=4% Similarity=0.267 Sum_probs=21.9
Q ss_pred HHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 135 ALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 135 ~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.|....+.|..+|..|..||.+|++-|.
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3445567788999999999999998664
No 102
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=62.03 E-value=9.9 Score=24.14 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=22.8
Q ss_pred HHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 135 ALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 135 ~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.|....+.|..+|..|..||.+|++-|.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3445567788999999999999998775
No 103
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=61.73 E-value=28 Score=26.95 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
.+++.+..+|.-.|-... ...++|..+|+++..|+.|...-|.+.|+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 488888888888765332 46789999999999999998766655544
No 104
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=61.52 E-value=7.2 Score=28.58 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
.++..+..+|.-.|-.. ..-.+||..||++...|+.+...-|.|.|+
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 38888888887765333 246789999999999998877655554443
No 105
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.25 E-value=12 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=15.0
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHH
Q 023291 138 SSYDSLVKENQKLKSEVVSLNEKIEA 163 (284)
Q Consensus 138 s~~~sl~~en~~L~~E~~~L~e~l~~ 163 (284)
++++.|+.+|+.|+.++..|++++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666555443
No 106
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=59.78 E-value=11 Score=26.04 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=22.0
Q ss_pred hHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 132 SYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 132 ~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.++.|+.++..|+.+++.|..++.+|+.+|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666677777777777777777777765
No 107
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.64 E-value=15 Score=25.72 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=14.7
Q ss_pred HHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHH
Q 023291 127 DLLKSSYDALLSSYDSLVKENQKLKSEVVSLNE 159 (284)
Q Consensus 127 ~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e 159 (284)
..|......|...+..|..+...|+.|+..|+.
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 108
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=58.63 E-value=54 Score=24.45 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 112 NRRARWKTKQLERDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 112 NRRaK~Krkq~~~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
+||.|.+-.+...+.+.|+..-+-|+.-...|..=-.+|..|..++...+.
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~ 63 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIE 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777788888877777777666666666666666666655543
No 109
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=58.61 E-value=4.8 Score=32.31 Aligned_cols=34 Identities=35% Similarity=0.692 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHH
Q 023291 74 VHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQ 121 (284)
Q Consensus 74 l~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq 121 (284)
+..++-.|+.|+||.++=-.. |+ +|||.|||..|
T Consensus 15 vRiIkiLyQSNPyP~peGTRq-aR-------------RNRRRRWR~RQ 48 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQ 48 (115)
T ss_dssp HHHHHHHHHSSCCCCCCCCTT-TH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchh-hh-------------HhHHHHHHHHH
Confidence 455666789999997652111 11 59999999765
No 110
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=58.16 E-value=22 Score=24.59 Aligned_cols=37 Identities=32% Similarity=0.483 Sum_probs=24.2
Q ss_pred hHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHhhhh
Q 023291 132 SYDALLSSYDSLVKENQKLKSEVVSLNEKIEAKEEES 168 (284)
Q Consensus 132 ~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~~~ee~~ 168 (284)
+|+.|....+.|+.||-+|+.|+..--..|.+-|-+.
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~et 40 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEA 40 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhh
Confidence 4556666666777788888877766666666555443
No 111
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=56.63 E-value=12 Score=23.79 Aligned_cols=28 Identities=4% Similarity=0.192 Sum_probs=22.4
Q ss_pred HHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 135 ALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 135 ~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.|....+.|..+|..|..||.+|++-|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3445567788999999999999998654
No 112
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=56.54 E-value=7.4 Score=28.75 Aligned_cols=35 Identities=34% Similarity=0.652 Sum_probs=23.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHHHH
Q 023291 74 VHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTKQL 122 (284)
Q Consensus 74 l~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krkq~ 122 (284)
+..+.-.|..|+||+++--.. |. .|||.+||..|.
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-------------RNRRRRWR~RQr 52 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQR 52 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-------------HHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-------------HHHHHHHHHHHH
Confidence 456666789999998652222 22 589999987663
No 113
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.43 E-value=48 Score=24.93 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=16.3
Q ss_pred HHHHHHHHhHHHHhhhhhH-------HHHhhHHHHHHHHHHHHH
Q 023291 124 RDYDLLKSSYDALLSSYDS-------LVKENQKLKSEVVSLNEK 160 (284)
Q Consensus 124 ~~~~~Lk~~~~~l~s~~~s-------l~~en~~L~~E~~~L~e~ 160 (284)
.+++.||..+..|...+.. +..+|++|+.|...-.++
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333 444444444444444433
No 114
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=53.12 E-value=7.8 Score=26.28 Aligned_cols=46 Identities=15% Similarity=-0.004 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~K 118 (284)
.+++.+..+|.-.|-.. ..-.++|..+|+++..|+.+...-|.+.|
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 48889999988876432 24678999999999998887765444443
No 115
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=53.05 E-value=31 Score=26.60 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
.+++.+..+|.-.|-.. ..-.++|..+|+++..|+.+...-|.+.|+
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888888887765433 246789999999999999888765555544
No 116
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=52.80 E-value=14 Score=29.57 Aligned_cols=48 Identities=19% Similarity=0.334 Sum_probs=36.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHH----Hh--CCCCcceeecchhh
Q 023291 63 PEKKRRLTAEQVHLLEKSF-EAENKLEPERKGQLAK----KL--GLQPRQVAVWFQNR 113 (284)
Q Consensus 63 ~rkRrRfT~~Ql~~LE~~F-~~~~~P~~~~r~eLA~----~L--gLs~rqVqvWFQNR 113 (284)
+++|+++|.+|...|-..+ +.++..+ ..+||. ++ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5677889999999998888 5666654 345566 77 77888888888663
No 117
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.52 E-value=59 Score=24.44 Aligned_cols=46 Identities=26% Similarity=0.249 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhHHHHhhHH-------HHHHHHHHHHHHHHH
Q 023291 119 TKQLERDYDLLKSSYDALLSSYDSLVKENQK-------LKSEVVSLNEKIEAK 164 (284)
Q Consensus 119 rkq~~~~~~~Lk~~~~~l~s~~~sl~~en~~-------L~~E~~~L~e~l~~~ 164 (284)
-++.-..+..|+-..+.|+..+..+.++++. |..|+..|++.+...
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344455667777777777777777777777 444555555554433
No 118
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.10 E-value=71 Score=25.95 Aligned_cols=45 Identities=27% Similarity=0.208 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHh
Q 023291 121 QLERDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIEAKE 165 (284)
Q Consensus 121 q~~~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~~~e 165 (284)
.+.++...||.....+.-..+.+.+++..|+.++..|+.++.+-+
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667776666666777777777777777777777666554
No 119
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=49.57 E-value=11 Score=27.31 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
..++..+..+|.-.+. . ....+||..+|++...|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4599999999988542 2 246789999999999998887765555444
No 120
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=49.55 E-value=23 Score=21.48 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=17.6
Q ss_pred hhhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 137 LSSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 137 ~s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
.+--.++..+|.+|++.+++|-.+.
T Consensus 5 nallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344567788989998888776553
No 121
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.94 E-value=34 Score=21.53 Aligned_cols=28 Identities=7% Similarity=0.023 Sum_probs=21.7
Q ss_pred HHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 135 ALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 135 ~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.|....+.+..+|..|..||.+|++-|.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3445566778899999999999988664
No 122
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=46.59 E-value=15 Score=25.46 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=16.9
Q ss_pred HHHHhhhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 133 YDALLSSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 133 ~~~l~s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
-+.+...+..+.++|..|+.++..|+++|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455566777778888888877777654
No 123
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=46.52 E-value=16 Score=27.79 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHH
Q 023291 66 KRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 (284)
Q Consensus 66 RrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~K 118 (284)
...+|+.+..+|.-.++-- .-.+||..||+++..|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3459999999998765322 3588999999999999888765444433
No 124
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=45.57 E-value=60 Score=22.40 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=22.3
Q ss_pred HHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 130 KSSYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 130 k~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
+.....|......+..+|..|..++..|++.+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777777777777777777766543
No 125
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=44.88 E-value=15 Score=27.41 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHH-hhc-CCCC-HHHHHHHHHHhCCCCcceeecch
Q 023291 66 KRRLTAEQVHLLEKSF-EAE-NKLE-PERKGQLAKKLGLQPRQVAVWFQ 111 (284)
Q Consensus 66 RrRfT~~Ql~~LE~~F-~~~-~~P~-~~~r~eLA~~LgLs~rqVqvWFQ 111 (284)
+++||.++....-..+ ... .+++ .....++|..+|+++..|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4569998865444443 322 1222 14577899999999999999864
No 126
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.60 E-value=1.2e+02 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchh
Q 023291 66 KRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQN 112 (284)
Q Consensus 66 RrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQN 112 (284)
.|.|+..++..|... ...+.+|++-..|+..+..
T Consensus 38 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 38 VRKFGAEDLRWILFT-------------RQMRRAGLSIEALIDYLAL 71 (142)
T ss_dssp CBCBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHH
T ss_pred CeeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHH
Confidence 456999999988543 2235667777666665543
No 127
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=44.57 E-value=17 Score=28.05 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~K 118 (284)
.+++.+..+|. .|-. ...-.+||..||+++..|+.+...-|.+.|
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 47777777777 3332 225678999999999999887764444443
No 128
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=44.33 E-value=12 Score=27.90 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krk 120 (284)
.++..+..+|.-.+.-- ...+||..||+++..|+.+..+-+.|.+..
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 49999999998864322 357899999999999998887666555543
No 129
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=43.55 E-value=38 Score=26.71 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=32.5
Q ss_pred CCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCCCc
Q 023291 64 EKKRRLTAEQVHLLEKSFEA-----ENKLEPERKGQLAKKLGLQPR 104 (284)
Q Consensus 64 rkRrRfT~~Ql~~LE~~F~~-----~~~P~~~~r~eLA~~LgLs~r 104 (284)
.++.++|.+|+..|...|.. +.+.+..+...+.+.||+.+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 34567999999999999974 457888888888888887765
No 130
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=42.84 E-value=45 Score=22.91 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=19.3
Q ss_pred HHHHhhhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 133 YDALLSSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 133 ~~~l~s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
.+.|......|..+|..|..++..|++.+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555667778888888877776543
No 131
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=42.38 E-value=50 Score=28.40 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=20.2
Q ss_pred HHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 126 YDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 126 ~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
++.+-..+..|...+..|.++|++|+.|-.+..++++
T Consensus 147 id~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 147 ICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444555555566666666666666555555443
No 132
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.32 E-value=69 Score=30.17 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 023291 122 LERDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIEAKEEESKEA 171 (284)
Q Consensus 122 ~~~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~~~ee~~~~~ 171 (284)
++.+.+..++..+.....-..+.+++++++.++.++..++.++.....+.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 34445555566666667777788888888888888888887777665554
No 133
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=41.93 E-value=19 Score=24.50 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHH
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~K 118 (284)
..+++.+..+|.-.+. .+ ...++|..+|+++..|+.+..+-+.|.+
T Consensus 10 ~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 10 PLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3599999999988532 22 4578999999999999887765554444
No 134
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=41.55 E-value=12 Score=27.36 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
.+++.+..+|.-.+. .+ ...+||..+|+++..|+.+..+-|.|.+.
T Consensus 29 ~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 29 MLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 499999999987543 22 34579999999999999888766655544
No 135
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=41.51 E-value=17 Score=25.27 Aligned_cols=50 Identities=8% Similarity=0.111 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~K 118 (284)
.+++.+..+|...|-.... ....-.+||..+|+++..|+.+...-+.|.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4899999999888841100 0124568999999999999887765444444
No 136
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=41.41 E-value=12 Score=25.67 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~K 118 (284)
.+++.+..+|.-.|-...+ ....-.+||..+|+++..|+.+...-+.|.|
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3788999999888732111 1124678999999999999887765444444
No 137
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=40.84 E-value=81 Score=21.57 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=10.1
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 138 SSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 138 s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
..|..|..--..-+.++..|++.|
T Consensus 23 ~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 23 ARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443
No 138
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=38.71 E-value=57 Score=20.66 Aligned_cols=27 Identities=4% Similarity=0.108 Sum_probs=21.6
Q ss_pred HhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 136 LLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 136 l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
|....+.+..++..|..||.+|++-|.
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 445566788899999999999998764
No 139
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=37.24 E-value=19 Score=24.99 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 69 LTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 69 fT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
+++.+..+|.-.+. .+ ...++|..+|+++..|+.+..+-+.|.+.
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 78888888877432 22 35689999999999998887765555554
No 140
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.80 E-value=19 Score=26.08 Aligned_cols=51 Identities=6% Similarity=0.156 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
.+++.+..+|...|-.... ....-.+||..+|+++..|+.+...-+.|.|+
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3889999999888741100 11246789999999999999887655544443
No 141
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=36.56 E-value=1.1e+02 Score=21.34 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=23.2
Q ss_pred HhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 131 SSYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 131 ~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.....|......|..+|..|+.++..|++.+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888888888888877776554
No 142
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.31 E-value=1.3e+02 Score=22.09 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=19.5
Q ss_pred HHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 133 YDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 133 ~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
...|......+..+++.|+.++..|+.+|.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555566667777777777777776654
No 143
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=35.40 E-value=1.6e+02 Score=23.27 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 023291 119 TKQLERDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIEA 163 (284)
Q Consensus 119 rkq~~~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~~ 163 (284)
+..++..+..+..........+..|.....+|..++..|+..|..
T Consensus 78 k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 78 KIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555555555555555543
No 144
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.74 E-value=1.2e+02 Score=21.24 Aligned_cols=28 Identities=32% Similarity=0.380 Sum_probs=15.4
Q ss_pred HHHHhhhhhHHHHhhHHHHHHHHHHHHH
Q 023291 133 YDALLSSYDSLVKENQKLKSEVVSLNEK 160 (284)
Q Consensus 133 ~~~l~s~~~sl~~en~~L~~E~~~L~e~ 160 (284)
...|......|..+|..|+.++..|+..
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555544
No 145
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.52 E-value=60 Score=29.26 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=15.8
Q ss_pred HHHhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 023291 134 DALLSSYDSLVKENQKLKSEVVSLNEKIEA 163 (284)
Q Consensus 134 ~~l~s~~~sl~~en~~L~~E~~~L~e~l~~ 163 (284)
..|...+..|......++.|+.+|++.+..
T Consensus 64 ~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 64 DSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555566666666665543
No 146
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=33.27 E-value=26 Score=28.09 Aligned_cols=46 Identities=9% Similarity=-0.057 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 69 LTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 69 fT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
+++.+..+|.-.|-.. ..-.+||..+|+++..|+.+...-|.+.|+
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7888888887665332 235789999999999998888655554443
No 147
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.10 E-value=1.2e+02 Score=29.18 Aligned_cols=8 Identities=25% Similarity=0.497 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 023291 152 SEVVSLNE 159 (284)
Q Consensus 152 ~E~~~L~e 159 (284)
.|+.+++.
T Consensus 544 ~~~~~le~ 551 (597)
T 3oja_B 544 QENIALEK 551 (597)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 33333333
No 148
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.41 E-value=1.6e+02 Score=22.14 Aligned_cols=39 Identities=18% Similarity=0.349 Sum_probs=21.8
Q ss_pred HHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 023291 125 DYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIEA 163 (284)
Q Consensus 125 ~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~~ 163 (284)
+....++.+-.+.+.-......|+.|..|+..|++++..
T Consensus 32 ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 32 EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344433333333344456677777777777777665
No 149
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.19 E-value=27 Score=28.79 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
.+++.+..+|.-.|-.. ....+||..+|+++..|+.+...-|.|.|+
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 38888888888876432 246789999999999988877655554443
No 150
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.83 E-value=1.3e+02 Score=20.79 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=23.6
Q ss_pred HhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 131 SSYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 131 ~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.....|......|..+|..|..++..|++.+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777778888888888888888776643
No 151
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=31.58 E-value=1.5e+02 Score=21.74 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 114 RARWKTKQLERDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 114 RaK~Krkq~~~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
|.|.|+++.. ..+......|..++..|..+.+.|..|+..|+..|
T Consensus 29 rSR~krk~r~---~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 29 KSRDKAKMRN---LETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554433 34556677788888889999999999998888654
No 152
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=31.13 E-value=1.9e+02 Score=23.30 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhH-------HHHhhhhhHHHHhhHHHHHHHHHHH
Q 023291 111 QNRRARWKTKQLERDYDLLKSSY-------DALLSSYDSLVKENQKLKSEVVSLN 158 (284)
Q Consensus 111 QNRRaK~Krkq~~~~~~~Lk~~~-------~~l~s~~~sl~~en~~L~~E~~~L~ 158 (284)
+|.+.+.+...+..+...+.... ..|...+..|...|+.|..++..++
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544443322 3333344444455554544444443
No 153
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.40 E-value=33 Score=26.06 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchh
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQN 112 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQN 112 (284)
+.++.++...+...+... . ...++|+.+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 458888877777776533 2 3678899999999999999964
No 154
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=29.48 E-value=31 Score=25.45 Aligned_cols=44 Identities=16% Similarity=0.183 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHH
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRAR 116 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK 116 (284)
..||..+..+|.-.+. .+ ...+||..||++++.|+...++=+.|
T Consensus 28 ~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 28 DVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp -CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4599999999988763 22 47789999999999988766544333
No 155
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=29.19 E-value=89 Score=23.63 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=26.2
Q ss_pred HHHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 123 ERDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 123 ~~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
+..+..|+...+.+..++..+.-+.++|..++.+++.+|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455666777777776666666666777777777766653
No 156
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.16 E-value=1.7e+02 Score=21.09 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=11.7
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 138 SSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 138 s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
.....+..+.+.|+.++..|+.+|
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555444
No 157
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.04 E-value=1.4e+02 Score=20.27 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=9.5
Q ss_pred hHHHHhhHHHHHHHHHHHHHHH
Q 023291 141 DSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 141 ~sl~~en~~L~~E~~~L~e~l~ 162 (284)
..+.+.|.+|...+.+.+.+|.
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~ 40 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLL 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 158
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.60 E-value=1.4e+02 Score=19.94 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=17.3
Q ss_pred HHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHH
Q 023291 126 YDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEK 160 (284)
Q Consensus 126 ~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~ 160 (284)
+.+||..+-.|......|.+--.+|+.|+.+|+..
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 34444433333333344444455666666666554
No 159
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=26.97 E-value=2.3e+02 Score=22.28 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhh----hhHHHHhhHHHHHHHHHHHHHHHHHh
Q 023291 117 WKTKQLERDYDLLKSSYDALLSS----YDSLVKENQKLKSEVVSLNEKIEAKE 165 (284)
Q Consensus 117 ~Krkq~~~~~~~Lk~~~~~l~s~----~~sl~~en~~L~~E~~~L~e~l~~~e 165 (284)
.+...+..+++.++..+...... ..+|..+...|+.+...|..+|..-|
T Consensus 10 ~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 10 ADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666655443 33466666666666666666665443
No 160
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.79 E-value=2.5e+02 Score=24.12 Aligned_cols=48 Identities=10% Similarity=0.161 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhh----hhHHHHhhHHHHHHHHHHHHHHH
Q 023291 115 ARWKTKQLERDYDLLKSSYDALLSS----YDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 115 aK~Krkq~~~~~~~Lk~~~~~l~s~----~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.+.+..++..+++.+|..+...... ...|..+...|+.....|+.+|.
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555554443 34444444555555555554443
No 161
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=25.74 E-value=22 Score=29.95 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCcceeecchhhH
Q 023291 91 RKGQLAKKLGLQPRQVAVWFQNRR 114 (284)
Q Consensus 91 ~r~eLA~~LgLs~rqVqvWFQNRR 114 (284)
...+||+.+|++...|..|..+++
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 457899999999999999998754
No 162
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.44 E-value=1.1e+02 Score=23.86 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=18.3
Q ss_pred HHHHhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 023291 133 YDALLSSYDSLVKENQKLKSEVVSLNEKIEA 163 (284)
Q Consensus 133 ~~~l~s~~~sl~~en~~L~~E~~~L~e~l~~ 163 (284)
+..+...-++|..|+++|+.++..|+-+|..
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666666666666643
No 163
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.33 E-value=2.6e+02 Score=23.50 Aligned_cols=17 Identities=29% Similarity=0.307 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHHhhc
Q 023291 68 RLTAEQVHLLEKSFEAE 84 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~ 84 (284)
.+|++|...|.+.++..
T Consensus 67 nLT~EQq~ql~~I~~e~ 83 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDY 83 (175)
T ss_dssp -CCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 48999988888887643
No 164
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.28 E-value=1.2e+02 Score=24.38 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchh
Q 023291 66 KRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQN 112 (284)
Q Consensus 66 RrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQN 112 (284)
.|.|+..++..|... ...+.+|++-..|+..+..
T Consensus 52 ~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 52 DRIFNEEALKYLEMI-------------LCLKNTGMPIQKIKQFIDW 85 (148)
T ss_dssp CEEBCHHHHHHHHHH-------------HHHHTTTCCHHHHHHHHHH
T ss_pred CeecCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHh
Confidence 345999998888443 2236667777776666654
No 165
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=25.26 E-value=51 Score=26.09 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchh
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQN 112 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQN 112 (284)
++++.++...+-..+... . ...+||+.+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 358888776666666533 2 3567899999999999999864
No 166
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=25.17 E-value=2e+02 Score=20.98 Aligned_cols=45 Identities=11% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHhCCC--Ccceeecc
Q 023291 66 KRRLTAEQVHLLEKSFEA-----ENKLEPERKGQLAKKLGLQ--PRQVAVWF 110 (284)
Q Consensus 66 RrRfT~~Ql~~LE~~F~~-----~~~P~~~~r~eLA~~LgLs--~rqVqvWF 110 (284)
...++.+++..|...|.. +.+.+..+...+.+.+|+. ..+|+.+|
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 345999999999999975 4578888888888888854 44544444
No 167
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=25.13 E-value=1.7e+02 Score=25.57 Aligned_cols=43 Identities=23% Similarity=0.457 Sum_probs=31.4
Q ss_pred HHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHhhhh
Q 023291 126 YDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIEAKEEES 168 (284)
Q Consensus 126 ~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~~~ee~~ 168 (284)
...|.+.+.+..+++..|..-...|++|+..|+..+++-+=+.
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 3346666777777777787778888888888888887765333
No 168
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.62 E-value=83 Score=21.50 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=14.7
Q ss_pred HHHHHHhHHHHhhhhhHHHHhhHHHHHH
Q 023291 126 YDLLKSSYDALLSSYDSLVKENQKLKSE 153 (284)
Q Consensus 126 ~~~Lk~~~~~l~s~~~sl~~en~~L~~E 153 (284)
...|-.....|...+..|..++..|..+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555543
No 169
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.55 E-value=1.5e+02 Score=22.36 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=21.0
Q ss_pred HHHHhhhhhHHHHhhHHHHHHHHHHHHHHHH
Q 023291 133 YDALLSSYDSLVKENQKLKSEVVSLNEKIEA 163 (284)
Q Consensus 133 ~~~l~s~~~sl~~en~~L~~E~~~L~e~l~~ 163 (284)
...+......|.++|..|+.++..|+..+..
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677777788888877777766553
No 170
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=24.28 E-value=32 Score=22.22 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecch
Q 023291 71 AEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQ 111 (284)
Q Consensus 71 ~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQ 111 (284)
+.+...+...+... + ...+||..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55655555555422 2 466899999999999988874
No 171
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.89 E-value=1.1e+02 Score=27.47 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHH
Q 023291 121 QLERDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNE 159 (284)
Q Consensus 121 q~~~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e 159 (284)
.++++...|.+.+..|...-..+.++..+|+.|+.+|+.
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555566666666666666666777777777766654
No 172
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.49 E-value=1.7e+02 Score=31.40 Aligned_cols=31 Identities=26% Similarity=0.293 Sum_probs=20.0
Q ss_pred HhhhhhHHHHhhHHHHHHHHHHHHHHHHHhh
Q 023291 136 LLSSYDSLVKENQKLKSEVVSLNEKIEAKEE 166 (284)
Q Consensus 136 l~s~~~sl~~en~~L~~E~~~L~e~l~~~ee 166 (284)
|...-..|.++|+.|+.++.+|+..+..+++
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777777777766655554
No 173
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=23.42 E-value=3.5 Score=32.71 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=20.4
Q ss_pred HHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHH
Q 023291 125 DYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEK 160 (284)
Q Consensus 125 ~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~ 160 (284)
++..|......|....+.|..||..|+.|+..++.+
T Consensus 59 ~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k 94 (107)
T 3a5t_A 59 QKEELEKQKAELQQEVEKLASENASMKLELDALRSK 94 (107)
T ss_dssp HHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666666666666665554443
No 174
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=23.39 E-value=43 Score=28.39 Aligned_cols=47 Identities=19% Similarity=0.276 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHH
Q 023291 66 KRRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWK 118 (284)
Q Consensus 66 RrRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~K 118 (284)
...+|+.+.++|.-.++ . ..-.+||..||++++.|+...+|-+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--G----KTASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--T----CCHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34599999999977542 2 24578999999999999988776555543
No 175
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=23.38 E-value=1.8e+02 Score=19.74 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=20.7
Q ss_pred HHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 125 DYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 125 ~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
....||..+..|......|......+..|+.+|+.-|
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3445666666665555555555555556655555444
No 176
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=23.24 E-value=48 Score=22.87 Aligned_cols=41 Identities=7% Similarity=0.098 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHH
Q 023291 68 RLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRA 115 (284)
Q Consensus 68 RfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRa 115 (284)
.++...+..+...... ...+||..+|++...|..|=++++.
T Consensus 10 ~~~g~~lr~~R~~~gl-------tq~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHHcCC-------CHHHHHHHhCcCHHHHHHHHcCCCC
Confidence 4888888888665432 2678999999999999999987653
No 177
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=22.91 E-value=40 Score=27.05 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCCcceeecchhhH
Q 023291 92 KGQLAKKLGLQPRQVAVWFQNRR 114 (284)
Q Consensus 92 r~eLA~~LgLs~rqVqvWFQNRR 114 (284)
...+|..+|+++.+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 57789999999999999985444
No 178
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=22.42 E-value=17 Score=23.87 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCcceeecchhhH
Q 023291 92 KGQLAKKLGLQPRQVAVWFQNRR 114 (284)
Q Consensus 92 r~eLA~~LgLs~rqVqvWFQNRR 114 (284)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998764
No 179
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.41 E-value=66 Score=23.41 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=19.7
Q ss_pred CCCCCCCCcccCCCCCCCcCCCCCCc
Q 023291 207 SSGCSGESAVVDEDGPQRVVDTGDSY 232 (284)
Q Consensus 207 s~~s~~~s~~~~~~~p~~~~~~~~s~ 232 (284)
|+||++|+..|..++..-..|.+.+|
T Consensus 2 ~~~~~~g~g~~~C~s~~~C~d~G~~Y 27 (68)
T 2ec3_A 2 SSGSSGGSGHFRCDSSRWCHDNGVNY 27 (68)
T ss_dssp CCCCCCCCCCSCCSCSSCBCSSSCCB
T ss_pred CCCccCCCceEEecccCceecCCeeE
Confidence 56777899999988886555777666
No 180
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=22.00 E-value=60 Score=24.53 Aligned_cols=45 Identities=7% Similarity=0.112 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhC--CCCcceeecchhhHH
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLG--LQPRQVAVWFQNRRA 115 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~Lg--Ls~rqVqvWFQNRRa 115 (284)
+.++..+...+... ..++..+. .+|+..+| ++...|..|+....-
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 34888888777766 44454443 46788888 688889999865443
No 181
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=21.95 E-value=61 Score=23.79 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchh
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQN 112 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQN 112 (284)
++++.++...+-..+.. .+ ...++|+.+|++...|..|++.
T Consensus 16 ~~~s~~~r~~i~~~~~~-g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAAD-GI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 35888776666666653 22 3567899999999999999864
No 182
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=21.45 E-value=18 Score=23.84 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCCcceeecchhhHH
Q 023291 92 KGQLAKKLGLQPRQVAVWFQNRRA 115 (284)
Q Consensus 92 r~eLA~~LgLs~rqVqvWFQNRRa 115 (284)
..+||..+|+++..|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 678999999999999999987543
No 183
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=21.25 E-value=1e+02 Score=26.43 Aligned_cols=34 Identities=18% Similarity=0.046 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhh
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNR 113 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNR 113 (284)
|.++..++..|. .....+.+|++-.+|+..+.++
T Consensus 43 R~y~~~~~~~l~-------------~i~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 43 RYYTDSQLIHLD-------------LIKSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp EEEETGGGGHHH-------------HHHHHHHTTCCHHHHHHHTTSC
T ss_pred cccCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhC
Confidence 448888887773 3333477888888888777655
No 184
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=21.15 E-value=2.1e+02 Score=21.54 Aligned_cols=29 Identities=34% Similarity=0.621 Sum_probs=13.6
Q ss_pred HHHhHHHHhhhhhHHHHhhHHHHHHHHHH
Q 023291 129 LKSSYDALLSSYDSLVKENQKLKSEVVSL 157 (284)
Q Consensus 129 Lk~~~~~l~s~~~sl~~en~~L~~E~~~L 157 (284)
|+..|.+..+++..|..-.++|++|...|
T Consensus 31 lr~~y~s~~se~~dlt~s~ekl~ae~~dl 59 (97)
T 1no4_A 31 LRVNYGSFVSEYNDLTKSHEKLAAEKDDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHhccCCe
Confidence 44444444444444444444454444433
No 185
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.10 E-value=2.9e+02 Score=26.31 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=13.2
Q ss_pred HHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHH
Q 023291 130 KSSYDALLSSYDSLVKENQKLKSEVVSLNEKI 161 (284)
Q Consensus 130 k~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l 161 (284)
+...+.....+..+.++.++|+......++++
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 33333333444444444444444444443333
No 186
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=20.94 E-value=20 Score=25.10 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCcceeecchhhH
Q 023291 92 KGQLAKKLGLQPRQVAVWFQNRR 114 (284)
Q Consensus 92 r~eLA~~LgLs~rqVqvWFQNRR 114 (284)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998765
No 187
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=20.79 E-value=2.7e+02 Score=20.88 Aligned_cols=48 Identities=27% Similarity=0.350 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHHhhhh
Q 023291 121 QLERDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIEAKEEES 168 (284)
Q Consensus 121 q~~~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~~~ee~~ 168 (284)
|++.+|...-+.|..|......|..+|..|---+.+|-.++.-.++.+
T Consensus 30 qlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig~t~~~e 77 (97)
T 1no4_A 30 QLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIGLTEKQE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhccchhhH
Confidence 455667777777777777777777777777777677666555444433
No 188
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.78 E-value=53 Score=25.22 Aligned_cols=40 Identities=10% Similarity=0.149 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHH
Q 023291 69 LTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRA 115 (284)
Q Consensus 69 fT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRa 115 (284)
++..++..|..... . ...+||..+|++...|..|-++++.
T Consensus 71 ~~~~~l~~~R~~~g----l---sq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 71 VAPEFIVKVRKKLS----L---TQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp CCHHHHHHHHHHTT----C---CHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHcC----C---CHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 55555555544432 2 2557899999999999999987653
No 189
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=20.75 E-value=44 Score=27.63 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=34.7
Q ss_pred CCCCHHH-HHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHH
Q 023291 67 RRLTAEQ-VHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRAR 116 (284)
Q Consensus 67 rRfT~~Q-l~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK 116 (284)
.+.|.++ +......|....|- ......||+++|++..-|-..|.||-.=
T Consensus 23 ~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~~K~~L 72 (211)
T 3fiw_A 23 TKMNRETVITEALDLLDEVGLD-GVSTRRLAKRLGVEQPSLYWYFRTKRDL 72 (211)
T ss_dssp -CCCHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHTTCSSHHHH
T ss_pred cccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHHHH
Confidence 3456555 45556667766543 3457889999999999999999986543
No 190
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.50 E-value=3.4e+02 Score=21.83 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHHHHHH
Q 023291 124 RDYDLLKSSYDALLSSYDSLVKENQKLKSEVVSLNEKIE 162 (284)
Q Consensus 124 ~~~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~e~l~ 162 (284)
.+.+.+......|+..--++....+.+..++.+|++++.
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333433333444444444444444444433
No 191
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.37 E-value=21 Score=23.51 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCCcceeecchhhHHHHHH
Q 023291 92 KGQLAKKLGLQPRQVAVWFQNRRARWKT 119 (284)
Q Consensus 92 r~eLA~~LgLs~rqVqvWFQNRRaK~Kr 119 (284)
..++|..+|+++..|+.+..+-+.|.+.
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 4689999999999999887765555443
No 192
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.07 E-value=74 Score=27.38 Aligned_cols=48 Identities=15% Similarity=0.072 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCCcceeecchhhHHHHHHH
Q 023291 67 RRLTAEQVHLLEKSFEAENKLEPERKGQLAKKLGLQPRQVAVWFQNRRARWKTK 120 (284)
Q Consensus 67 rRfT~~Ql~~LE~~F~~~~~P~~~~r~eLA~~LgLs~rqVqvWFQNRRaK~Krk 120 (284)
..+++.+..+|.-.++ .+ .-.++|..||+++..|++...+-|.|.|..
T Consensus 196 ~~L~~~erevl~L~~~--G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIRK--GL----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4599999999988652 22 467899999999999998887666655543
No 193
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.07 E-value=1.2e+02 Score=22.60 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHhhhhhHHHHhhHHHHHHHHHHH
Q 023291 126 YDLLKSSYDALLSSYDSLVKENQKLKSEVVSLN 158 (284)
Q Consensus 126 ~~~Lk~~~~~l~s~~~sl~~en~~L~~E~~~L~ 158 (284)
+..|+.....+....+.|..+|+.|+.++..|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Done!