BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023292
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 37 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWT 96
S+D LAD I VL + ++ +GV AGAYIL +A+ + V GL+L++ A W
Sbjct: 83 SLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWM 142
Query: 97 EWLYNKVMSNLLYYYGMCGVVKELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS- 154
+W +K+ G+ + E++L FS+ E+ GN S+++Q R ++ +
Sbjct: 143 DWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNL 190
Query: 155 SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVE 211
N+ ++ + N R D++ G L+C ++ VG+ +P V SK+D ++ ++
Sbjct: 191 DNIENYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLK 250
Query: 212 VQACGSMVTEEQPHAMLIPMEYFLMGYG 239
+ G QP + +YFL G G
Sbjct: 251 MADSGGQPQLTQPGKLTEAFKYFLQGMG 278
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 17/208 (8%)
Query: 37 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWT 96
S+D LAD I VL + ++ +GV AGAYIL +A+ + V GL+L++ A W
Sbjct: 83 SLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWM 142
Query: 97 EWLYNKVMSNLLYYYGMCGVVKELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS- 154
+W +K+ G+ + E++L FS+ E+ GN S+++Q R ++ +
Sbjct: 143 DWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNL 190
Query: 155 SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVE 211
N+ + + N R D++ G L+C ++ VG+ +P V SK+D ++ ++
Sbjct: 191 DNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLK 250
Query: 212 VQACGSMVTEEQPHAMLIPMEYFLMGYG 239
+ G QP + +YFL G G
Sbjct: 251 MADSGGQPQLTQPGKLTEAFKYFLQGMG 278
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 17/208 (8%)
Query: 37 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWT 96
S+D LAD I VL + ++ +GV AGAYIL +A+ + V GL+L++ A W
Sbjct: 83 SLDQLADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWM 142
Query: 97 EWLYNKVMSNLLYYYGMCGVVKELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS- 154
+W +K+ G+ + E++L FS+ E+ GN S+++Q R ++ +
Sbjct: 143 DWAAHKLT-------GLTSSIPEMILGHLFSQEELSGN-----SELIQKYRNIITHAPNL 190
Query: 155 SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVE 211
N+ + + N R D++ G L+C ++ VG+ +P V SK+D ++ ++
Sbjct: 191 DNIELYWNSYNNRRDLNFERGGDITLRCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLK 250
Query: 212 VQACGSMVTEEQPHAMLIPMEYFLMGYG 239
+ G QP + +YFL G G
Sbjct: 251 MADSGGQPQLTQPGKLTEAFKYFLQGMG 278
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 17/206 (8%)
Query: 37 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPLCKAPSWT 96
S+D LAD I +L + ++ +GV AGAYIL+ +A+ + V GL+L++ A W
Sbjct: 93 SLDQLADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWM 152
Query: 97 EWLYNKVMSNLLYYYGMCGVVKELLLKRYFSK-EVRGNAQVPESDIVQACRRLLDERQS- 154
+W +K+ G+ + +++L FS+ E+ GN S+++Q R ++ +
Sbjct: 153 DWAAHKLT-------GLTSSIPDMILGHLFSQEELSGN-----SELIQKYRGIIQHAPNL 200
Query: 155 SNVWHFLEAINGRPDIS---EGLRKLQCRSLIFVGESSPFHSEAVHMTSKIDRRYSALVE 211
N+ + + N R D++ G L+C ++ VG+ +P V SK+D ++ ++
Sbjct: 201 ENIELYWNSYNNRRDLNFERGGETTLKCPVMLVVGDQAPHEDAVVECNSKLDPTQTSFLK 260
Query: 212 VQACGSMVTEEQPHAMLIPMEYFLMG 237
+ G QP + +YFL G
Sbjct: 261 MADSGGQPQLTQPGKLTEAFKYFLQG 286
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 20 ELLQFGAAAISD--DEPVLSVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYR 77
+L FG + D D S+D AD A +L+ G+ +G A +L F KY
Sbjct: 62 DLRGFGDSEKPDLNDLSKYSLDKAADDQAALLDALGIEKAYVVGHDFAAIVLHKFIRKYS 121
Query: 78 HRVLGLILVSPL 89
RV+ + P+
Sbjct: 122 DRVIKAAIFDPI 133
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 23 QFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 80
QFG + + D + AE L FG V MG + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 81 LGLILVSPLCKAP 93
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 23 QFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 80
QFG + + D + AE L FG V MG + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 81 LGLILVSPLCKAP 93
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 23 QFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 80
QFG + + D + AE L FG V MG + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 81 LGLILVSPLCKAP 93
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 23 QFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 80
QFG + + D + AE L FG V MG + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 81 LGLILVSPLCKAP 93
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 23 QFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 80
QFG + + D + AE L FG V MG + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHL 122
Query: 81 LGLILVSPLCKAP 93
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 23 QFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 80
QFG + + D + AE L FG V MG G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLMGSAYGGALALAYAVKYQDHL 122
Query: 81 LGLILVSPLCKAP 93
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 37 SVDDLADQIAEVLNHFGLGAVMCMGVTAGAYILTLFAMKYRHRVLGLILVSPL 89
S LA +L G+ +G + G + T +A+ Y +V L+LV+P+
Sbjct: 96 SFQQLAANTHALLERLGVARASVIGHSXGGXLATRYALLYPRQVERLVLVNPI 148
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 23 QFGAAAISDDEPVLSVDDLADQIAEVLNH--FGLGAVMCMGVTAGAYILTLFAMKYRHRV 80
QFG + + D + AE L FG V G + G + +A+KY+ +
Sbjct: 63 QFGCGRSEEPDQSKFTIDYGVEEAEALRSKLFGNEKVFLXGSSYGGALALAYAVKYQDHL 122
Query: 81 LGLILVSPLCKAP 93
GLI+ L P
Sbjct: 123 KGLIVSGGLSSVP 135
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 20 ELLQFGAAAISDDEPV---LSVDDLADQIAEVLNHFGL---GA----VMCMGVTAGAYIL 69
E L FG + D + S LAD AE++ H GA V+ +G + G +
Sbjct: 82 ESLPFGDNSFKDSRHLNFLTSEQALAD-FAELIKHLKRTIPGAENQPVIAIGGSYGGMLA 140
Query: 70 TLFAMKYRHRVLGLILVSPLCKAPSW 95
F MKY H V+G + S AP W
Sbjct: 141 AWFRMKYPHMVVGALAAS----APIW 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,121,075
Number of Sequences: 62578
Number of extensions: 313155
Number of successful extensions: 682
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 17
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)