BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023293
         (284 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 65  CRICQ-EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
           CRIC  E D  + L TPC C+GSL + H+ C+Q W        CE+C  ++
Sbjct: 18  CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 68


>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 34.3 bits (77), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 55  EDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
           ED P+     C IC EE   N     C C+G L+  HR C+  W     +  C+IC   Y
Sbjct: 4   EDVPV-----CWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57

Query: 115 KP 116
             
Sbjct: 58  NT 59


>pdb|3CV2|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
           Bacillis Anthracis Malate Synthase A: Comparison With
           Isoform G And Implications For Structure Based Drug
           Design
 pdb|3CV2|B Chain B, Atomic Resolution Structures Of Escherichia Coli And
           Bacillis Anthracis Malate Synthase A: Comparison With
           Isoform G And Implications For Structure Based Drug
           Design
          Length = 532

 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 93  KCVQHWCNEKGDI-TCEICHQQYKPNYTAPPPPRLEETAIEIGGGWTISGTPLDLRDPRL 151
           + V H+  ++  +    I  QQ   N T P    + ETA      W I G P DL D R+
Sbjct: 34  ELVTHFTPQRNKLLAARIQQQQDIDNGTLPD--FISETASIRDADWKIRGIPADLEDRRV 91

Query: 152 LAIAEAERQFLEAEYDEYDASNASGSAFC 180
                 ER+ +       +A NA+   F 
Sbjct: 92  EITGPVERKMV------INALNANVKVFM 114


>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
           Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
           Northeast Structural Genomics Consortium (Nesg) Target
           Hr4710b
          Length = 91

 Score = 28.1 bits (61), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 65  CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116
           C IC  E    ++ T   C     Y H+ CV  W  + G  TC +C   + P
Sbjct: 43  CPICCSEYVKGDVATELPCH---HYFHKPCVSIWLQKSG--TCPVCRCMFPP 89


>pdb|3CUZ|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
           Bacillis Anthracis Malate Synthase A: Comparison With
           Isoform G And Implications For Structure Based Drug
           Design
 pdb|3CV1|A Chain A, Atomic Resolution Structures Of Escherichia Coli And
           Bacillis Anthracis Malate Synthase A: Comparison With
           Isoform G And Implications For Structure Based Drug
           Design
          Length = 532

 Score = 28.1 bits (61), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 93  KCVQHWCNEKGDI-TCEICHQQYKPNYTAPPPPRLEETAIEIGGGWTISGTPLDLRDPRL 151
           + V H+  ++  +    I  QQ   N T P    + ETA      W I G P DL D R+
Sbjct: 34  ELVTHFTPQRNKLLAARIQQQQDIDNGTLPD--FISETASIRDADWKIRGIPADLEDRRV 91

Query: 152 LAIAEAERQFLEAEYDEYDASNASGSAFC 180
                 ER+ +       +A NA+   F 
Sbjct: 92  EITGPVERKMV------INALNANVKVFM 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,957,806
Number of Sequences: 62578
Number of extensions: 315722
Number of successful extensions: 565
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 7
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)