BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023293
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 56.6 bits (135), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 44 AGNDVDDEKVGEDEPLLQVGECRICQEEDSINN-LETPCACSGSLKYAHRKCVQHWCNEK 102
A + D +D P CRIC+ E + +N L PC C GS+KY H C+ W K
Sbjct: 20 ANEETDTATFNDDAP--SGATCRICRGEATEDNPLFHPCKCRGSIKYMHESCLLEWVASK 77
Query: 103 --------GDITCEICHQ--QYKPNYTAPPPPRL 126
D+ C+ICH Q+K Y P ++
Sbjct: 78 NIDISKPGADVKCDICHYPIQFKTIYAENMPEKI 111
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 42 CSAGNDVDDEKVGEDEPL-------LQVGECRICQEEDSINNLETPCACSGSLKYAHRKC 94
CS+ D EK+ E L ++ CRIC + L +PC CSGS++ H C
Sbjct: 113 CSSSEDCSKEKLDERLSLNSCTDSGVRTPLCRICFQGPEQGELLSPCRCSGSVRCTHEPC 172
Query: 95 VQHWCNEKGDITCEICHQQYK 115
+ W +E+G +CE+C+ +Y+
Sbjct: 173 LIKWISERGSWSCELCYYKYQ 193
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
CRIC E S +L +PC C+G+L HR C++HW + CE+CH ++
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
CRIC E S +L +PC C+G+L HR C++HW + CE+CH ++
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
CRIC E S +L +PC C+G+L HR C++HW + CE+CH ++
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
CRIC E S +L +PC C+G+L HR C++HW + CE+CH ++
Sbjct: 71 CRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 120
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 55 EDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
D P+ CRIC E + +L +PC C+G+L HR C++HW + CE+CH ++
Sbjct: 65 NDHPM-----CRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 119
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 55 EDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
D P+ CRIC E + +L +PC C+G+L HR C++HW + CE+CH ++
Sbjct: 64 NDRPM-----CRICHEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRF 118
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 20 EEGDGAARETSGGVLEDEAGPSCSAGNDVD---DEKVGEDEPLLQVGECRICQEEDSINN 76
E G G RE G + E CS+ + D++ G Q C+IC +
Sbjct: 123 EAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQHQHHQP-ICKICFQGAEQGE 181
Query: 77 LETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
L PC C GS++Y H+ C+ W +E+G TCE+C +Y
Sbjct: 182 LLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRY 219
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 64 ECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115
+CRIC + L +PC C GS++ H+ C+ W +E+G +CE+C+ +Y+
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ 160
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY----KPN--- 117
CRIC E + NL +PC C+G+L H+ C++ W + CE+CH ++ +P
Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLT 123
Query: 118 -YTAPPPPRLEETAI 131
+ P PR E+ +
Sbjct: 124 EWLKDPGPRTEKRTL 138
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 64 ECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115
+CRIC + L +PC C GS++ H+ C+ W +E+G +CE+C+ +Y+
Sbjct: 109 QCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQ 160
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY----KPN--- 117
CRIC E + NL +PC C+G+L H+ C++ W + CE+CH ++ +P
Sbjct: 64 CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLT 123
Query: 118 -YTAPPPPRLEETAI 131
+ P PR E+ +
Sbjct: 124 EWLKDPGPRTEKRTL 138
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK--------P 116
CRIC E + +L +PC CSG+L H+ C++ W + CE+CH ++
Sbjct: 64 CRICHEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEFAVEKRSRSLT 123
Query: 117 NYTAPPPPRLEETAI 131
+ P PR E+ +
Sbjct: 124 EWLKDPGPRTEKRTL 138
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
C+IC + L PC C GS++Y H+ C+ W +E+G TCE+C +Y
Sbjct: 166 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRY 215
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
C+IC + L PC C GS++Y H+ C+ W +E+G TCE+C +Y
Sbjct: 168 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRY 217
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 65 CRICQEEDSINN-LETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQ--YKPNYTAP 121
CR+C+ E + L PC C+GS+K+ H++C+ W CE+C + + P Y+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPD 68
Query: 122 PPPRL 126
P RL
Sbjct: 69 MPSRL 73
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 65 CRICQEEDSINN-LETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQ--YKPNYTAP 121
CR+C+ E + L PC C+GS+K+ H++C+ W CE+C + + P Y+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPD 68
Query: 122 PPPRL 126
P RL
Sbjct: 69 MPSRL 73
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 65 CRICQEEDSINN-LETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQ--YKPNYTAP 121
CR+C+ E + L PC C+GS+K+ H++C+ W CE+C + + P Y+
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTPIYSPD 68
Query: 122 PPPRL 126
P RL
Sbjct: 69 MPSRL 73
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 43 SAGNDVDDEKVGEDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK 102
S G+ +D G PL CRIC + L +PC C GS+K H+ C+ W +E+
Sbjct: 149 SLGSSLDS---GMRTPL-----CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISER 200
Query: 103 GDITCEICHQQY 114
G +CE+C+ +Y
Sbjct: 201 GCWSCELCYYKY 212
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 43 SAGNDVDDEKVGEDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK 102
S G+ +D G PL CRIC + L +PC C GS+K H+ C+ W +E+
Sbjct: 148 SLGSSLDS---GMRTPL-----CRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISER 199
Query: 103 GDITCEICHQQY 114
G +CE+C+ +Y
Sbjct: 200 GCWSCELCYYKY 211
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY----KPN--- 117
CRIC E + L +PC C+G+L H+ C++ W + CE+CH ++ +P
Sbjct: 64 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERRPRPVT 123
Query: 118 -YTAPPPPRLEETAI 131
+ P PR E+ +
Sbjct: 124 EWLKDPGPRHEKRTL 138
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
CRIC E + L +PC C+G+L H+ C++ W + CE+CH ++
Sbjct: 64 CRICHEGGNGERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEF 113
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY----KPN--- 117
CRIC E + L +PC C+G+L H+ C++ W + CE+CH ++ +P
Sbjct: 64 CRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPLT 123
Query: 118 -YTAPPPPRLEETAI 131
+ P PR E+ +
Sbjct: 124 EWLKDPGPRTEKRTL 138
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 49.3 bits (116), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 65 CRICQEEDSINN-LETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115
CR+C+ E + ++ L PC C+GS++Y H++C+ W CE+C +++
Sbjct: 8 CRVCRCEGAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFE 59
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 65 CRICQ--EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGD--------ITCEICHQQY 114
CRICQ S N L PC C+GSL+Y H++C++ W K + TCE+C ++
Sbjct: 553 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKL 612
Query: 115 KPN 117
+ N
Sbjct: 613 QLN 615
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 65 CRICQ--EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGD--------ITCEICHQQY 114
CRICQ S N L PC C+GSL+Y H++C++ W K + TCE+C ++
Sbjct: 554 CRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKL 613
Query: 115 KPN 117
+ N
Sbjct: 614 QLN 616
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 65 CRICQEEDSINNLE---TPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
CRIC E + N E +PC C+G+L H+ C++ W + CE+CH ++
Sbjct: 64 CRICHEGQDVCNSEGLLSPCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHTEF 116
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 65 CRICQ--EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGD--------ITCEICHQQY 114
CRICQ S N L PC C+GSL+Y H+ C++ W K + TCE+C ++
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 115 KPN 117
+ N
Sbjct: 612 ELN 614
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 65 CRICQ--EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGD--------ITCEICHQQY 114
CRICQ S N L PC C+GSL+Y H+ C++ W K + TCE+C ++
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 115 KPN 117
+ N
Sbjct: 612 ELN 614
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 65 CRICQ-EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
CRIC E D + L TPC C+GSL + H+ C+Q W CE+C ++
Sbjct: 76 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEF 126
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 65 CRICQ-EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
CRIC E D + L TPC C+GSL + H+ C+Q W CE+C ++
Sbjct: 78 CRICHCEGDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYEF 128
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 65 CRICQ-EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPP 123
CRIC E D + L TPC C+GSL + H+ C+Q W CE+C ++ P
Sbjct: 80 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPL 139
Query: 124 PRLEE 128
+ E+
Sbjct: 140 RKWEK 144
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 65 CRICQ-EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPP 123
CRIC E D + L TPC C+GSL + H+ C+Q W CE+C ++ P
Sbjct: 53 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEFIMETKLKPL 112
Query: 124 PRLEE 128
+ E+
Sbjct: 113 RKWEK 117
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 65 CRICQ-EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPP 123
CRIC E D + L TPC C+GSL + H+ C+Q W CE+C ++ P
Sbjct: 53 CRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFEFIMETKLKPL 112
Query: 124 PRLEE 128
+ E+
Sbjct: 113 RKWEK 117
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 65 CRICQ-EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
CRIC E D + L TPC C+G+L++ H+ C+ W CE+C +
Sbjct: 80 CRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 130
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 65 CRICQ-EEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
CRIC E D + L TPC C+G+L++ H+ C+ W CE+C +
Sbjct: 80 CRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDF 130
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 65 CRICQ--EEDSINNLETPCACSGSLKYAHRKCVQHWCNEK----GDI----TCEICHQ 112
CRICQ N L PC C GSL++ H++C++ W K D+ TCE+C Q
Sbjct: 641 CRICQIAGGSPANPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMCKQ 698
>sp|Q6NYK8|MARH5_DANRE E3 ubiquitin-protein ligase MARCH5 OS=Danio rerio GN=march5 PE=2
SV=1
Length = 289
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 64 ECRIC---QEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK------GDITCEICHQQY 114
C +C ++ED +PC C G K+ H+ C+Q W +EK G ++C C +Y
Sbjct: 11 HCWVCFATEKEDRAAEWVSPCRCKGCTKWIHQSCLQRWLDEKQKGNSGGAVSCPQCGTEY 70
Query: 115 K 115
+
Sbjct: 71 R 71
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 65 CRICQ--EEDSINNLETPCACSGSLKYAHRKCVQHWCNEK----GDI----TCEICHQ 112
CRICQ N L PC C GSL++ H++C++ W K D+ TCE+C Q
Sbjct: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 64 ECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117
+C IC++ +S+ C C G L+Y H +C++ W + G+ C+ C YK N
Sbjct: 131 QCWICRDGESLPEARY-CNCYGDLQYCHEECLKTWISMSGEKKCKFCQTPYKVN 183
>sp|Q5ZJ41|MARH5_CHICK E3 ubiquitin-protein ligase MARCH5 OS=Gallus gallus GN=MARCH5 PE=2
SV=1
Length = 281
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 50 DEKVGEDEPLLQVGECRIC---QEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK---- 102
E+ G P C +C E+D PC C GS K+ H+ C+Q W +EK
Sbjct: 2 SEQTGLALPQTMDRSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQTCLQRWVDEKQRGN 61
Query: 103 --GDITCEICHQQY 114
+ C C+ +Y
Sbjct: 62 STARVACPQCNAEY 75
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 65 CRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115
C IC+EE + PCAC+G L H +C+ W + C++C Y+
Sbjct: 15 CWICREEVGNEGIH-PCACTGELDVVHPQCLSTWLTVSRNTACQMCRVIYR 64
>sp|Q6GM44|MARH5_XENLA E3 ubiquitin-protein ligase MARCH5 OS=Xenopus laevis GN=march5 PE=2
SV=1
Length = 283
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 65 CRIC---QEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK------GDITCEICHQQY 114
C +C E+D PC C GS K+ H+ C+Q W +EK + C C+ +Y
Sbjct: 17 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 75
>sp|Q3KNM2|MARH5_MOUSE E3 ubiquitin-protein ligase MARCH5 OS=Mus musculus GN=March5 PE=2
SV=1
Length = 278
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 64 ECRIC---QEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK------GDITCEICHQQY 114
C +C E+D PC C GS K+ H+ C+Q W +EK + C C+ +Y
Sbjct: 13 SCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q9NX47|MARH5_HUMAN E3 ubiquitin-protein ligase MARCH5 OS=Homo sapiens GN=MARCH5 PE=1
SV=1
Length = 278
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 64 ECRIC---QEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK------GDITCEICHQQY 114
C +C E+D PC C GS K+ H+ C+Q W +EK + C C+ +Y
Sbjct: 13 SCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q0X0A5|MARH5_CHLAE E3 ubiquitin-protein ligase MARCH5 OS=Chlorocebus aethiops
GN=MARCH5 PE=2 SV=1
Length = 278
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 64 ECRIC---QEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK------GDITCEICHQQY 114
C +C E+D PC C GS K+ H+ C+Q W +EK + C C+ +Y
Sbjct: 13 SCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q3ZC24|MARH5_BOVIN E3 ubiquitin-protein ligase MARCH5 OS=Bos taurus GN=MARCH5 PE=2
SV=1
Length = 278
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 64 ECRIC---QEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK------GDITCEICHQQY 114
C +C E+D PC C GS K+ H+ C+Q W +EK + C C+ +Y
Sbjct: 13 SCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEY 72
>sp|Q6TV02|LAP_YMTV5 E3 ubiquitin-protein ligase LAP OS=Yaba monkey tumor virus (strain
VR587) GN=LAP PE=3 SV=1
Length = 156
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 65 CRICQEE-DSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY--KPNY 118
C IC + D NN C CS K H KC+Q W N + C++C +Y K +Y
Sbjct: 5 CWICNDTCDERNNF---CICSEEYKIVHLKCMQSWINYSKKVECDLCKNKYNIKKSY 58
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 55 EDEPLLQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114
ED P+ C IC EE N C C+G L+ HR C+ W + C+IC Y
Sbjct: 4 EDVPV-----CWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57
Query: 115 K 115
Sbjct: 58 N 58
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,246,627
Number of Sequences: 539616
Number of extensions: 4690644
Number of successful extensions: 11658
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 11594
Number of HSP's gapped (non-prelim): 84
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)