Query 023293
Match_columns 284
No_of_seqs 229 out of 793
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.8 3.3E-19 1.1E-23 130.3 3.6 54 62-116 6-59 (60)
2 2d8s_A Cellular modulator of i 99.6 9.8E-17 3.4E-21 123.0 4.9 62 63-124 16-78 (80)
3 2ep4_A Ring finger protein 24; 97.7 4.7E-05 1.6E-09 55.0 5.1 48 62-116 15-64 (74)
4 2ect_A Ring finger protein 126 97.6 2.1E-05 7.2E-10 57.5 2.5 53 61-120 14-68 (78)
5 2kiz_A E3 ubiquitin-protein li 97.6 5.7E-05 2E-09 53.9 4.6 50 61-117 13-64 (69)
6 1v87_A Deltex protein 2; ring- 97.5 7.4E-05 2.5E-09 58.2 3.5 52 63-119 26-97 (114)
7 1x4j_A Ring finger protein 38; 97.3 0.00014 4.8E-09 52.9 2.9 48 62-116 23-72 (75)
8 2l0b_A E3 ubiquitin-protein li 97.2 0.00015 5E-09 55.2 2.8 49 61-116 39-89 (91)
9 2ecn_A Ring finger protein 141 97.2 0.00013 4.5E-09 52.1 2.2 47 61-116 14-60 (70)
10 2ct0_A Non-SMC element 1 homol 97.2 0.00018 6.1E-09 54.5 2.8 51 62-118 15-66 (74)
11 2ecl_A Ring-box protein 2; RNF 97.1 0.00015 5.2E-09 54.2 1.9 27 88-116 50-76 (81)
12 2ct2_A Tripartite motif protei 97.1 0.00044 1.5E-08 50.9 4.0 51 61-116 14-68 (88)
13 2ecm_A Ring finger and CHY zin 97.1 0.00019 6.4E-09 48.8 1.7 47 62-115 5-54 (55)
14 2yur_A Retinoblastoma-binding 97.0 0.00038 1.3E-08 50.8 3.1 49 61-115 14-63 (74)
15 2d8t_A Dactylidin, ring finger 97.0 0.00022 7.7E-09 51.4 1.4 50 61-118 14-63 (71)
16 2djb_A Polycomb group ring fin 96.9 0.00072 2.5E-08 48.8 4.0 50 61-117 14-63 (72)
17 2ea6_A Ring finger protein 4; 96.9 0.00024 8.3E-09 49.9 1.2 48 61-115 14-67 (69)
18 1iym_A EL5; ring-H2 finger, ub 96.9 0.00022 7.7E-09 48.5 1.0 48 62-115 5-54 (55)
19 2csy_A Zinc finger protein 183 96.8 0.0013 4.4E-08 48.3 4.4 47 61-115 14-60 (81)
20 1chc_A Equine herpes virus-1 r 96.8 0.00056 1.9E-08 48.4 2.2 47 63-116 6-52 (68)
21 2ecw_A Tripartite motif-contai 96.6 0.0017 5.7E-08 47.1 4.0 50 61-116 18-71 (85)
22 3ztg_A E3 ubiquitin-protein li 96.6 0.0014 5E-08 49.0 3.7 50 60-115 11-61 (92)
23 2ysl_A Tripartite motif-contai 96.6 0.0011 3.7E-08 47.4 2.8 51 60-116 18-69 (73)
24 2ecy_A TNF receptor-associated 96.4 0.0017 5.8E-08 45.9 2.6 49 61-116 14-62 (66)
25 2xeu_A Ring finger protein 4; 96.3 0.00054 1.8E-08 47.4 -0.4 48 62-116 3-56 (64)
26 2ecv_A Tripartite motif-contai 96.3 0.005 1.7E-07 44.5 4.8 50 61-116 18-71 (85)
27 2ecj_A Tripartite motif-contai 96.2 0.0033 1.1E-07 42.7 3.4 44 61-110 14-58 (58)
28 3dpl_R Ring-box protein 1; ubi 96.1 0.0023 7.9E-08 50.9 2.4 27 88-116 75-101 (106)
29 2ysj_A Tripartite motif-contai 96.0 0.0068 2.3E-07 42.3 4.2 45 60-110 18-63 (63)
30 1e4u_A Transcriptional repress 96.0 0.0053 1.8E-07 46.1 3.6 51 62-116 11-62 (78)
31 2egp_A Tripartite motif-contai 95.8 0.0017 5.8E-08 46.9 0.1 50 61-116 11-65 (79)
32 1t1h_A Gspef-atpub14, armadill 95.6 0.0064 2.2E-07 44.0 2.7 49 61-116 7-55 (78)
33 3lrq_A E3 ubiquitin-protein li 95.6 0.0044 1.5E-07 47.7 1.8 49 61-116 21-70 (100)
34 3ng2_A RNF4, snurf, ring finge 95.4 0.004 1.4E-07 44.0 1.0 48 62-116 10-63 (71)
35 2y43_A E3 ubiquitin-protein li 95.3 0.0044 1.5E-07 47.1 1.1 47 62-116 22-69 (99)
36 1g25_A CDK-activating kinase a 95.2 0.0099 3.4E-07 41.8 2.5 48 63-116 4-55 (65)
37 2ckl_B Ubiquitin ligase protei 95.1 0.007 2.4E-07 50.1 1.6 48 61-115 53-101 (165)
38 4a0k_B E3 ubiquitin-protein li 95.0 0.0046 1.6E-07 50.3 0.4 27 88-116 86-112 (117)
39 1jm7_A BRCA1, breast cancer ty 94.8 0.011 3.7E-07 45.3 2.0 48 63-116 22-70 (112)
40 3fl2_A E3 ubiquitin-protein li 94.7 0.016 5.4E-07 45.8 2.7 47 63-116 53-99 (124)
41 3k1l_B Fancl; UBC, ring, RWD, 94.7 0.01 3.5E-07 57.2 1.9 56 61-119 307-376 (381)
42 4ayc_A E3 ubiquitin-protein li 94.4 0.0088 3E-07 48.4 0.5 44 64-115 55-98 (138)
43 2ckl_A Polycomb group ring fin 94.1 0.012 4.2E-07 45.4 0.8 47 62-116 15-62 (108)
44 1z6u_A NP95-like ring finger p 93.8 0.027 9.1E-07 46.8 2.4 49 62-117 78-126 (150)
45 2y1n_A E3 ubiquitin-protein li 93.7 0.031 1.1E-06 53.9 2.9 49 62-117 332-380 (389)
46 3hct_A TNF receptor-associated 93.4 0.044 1.5E-06 43.0 2.9 49 61-116 17-65 (118)
47 3nw0_A Non-structural maintena 92.9 0.055 1.9E-06 48.5 3.1 51 61-117 179-230 (238)
48 1rmd_A RAG1; V(D)J recombinati 92.7 0.056 1.9E-06 42.0 2.5 49 62-117 23-71 (116)
49 4ap4_A E3 ubiquitin ligase RNF 92.2 0.037 1.3E-06 42.9 0.8 50 61-117 71-126 (133)
50 2kr4_A Ubiquitin conjugation f 92.0 0.13 4.6E-06 38.5 3.7 49 60-116 12-60 (85)
51 2c2l_A CHIP, carboxy terminus 91.3 0.11 3.7E-06 45.1 2.9 49 61-116 207-255 (281)
52 4ap4_A E3 ubiquitin ligase RNF 91.2 0.032 1.1E-06 43.3 -0.5 48 62-116 7-60 (133)
53 1wgm_A Ubiquitin conjugation f 91.1 0.17 5.8E-06 39.2 3.6 49 61-116 21-69 (98)
54 1jm7_B BARD1, BRCA1-associated 89.0 0.064 2.2E-06 42.0 -0.4 44 62-115 22-66 (117)
55 2kre_A Ubiquitin conjugation f 88.9 0.23 7.9E-06 38.6 2.7 49 60-116 27-75 (100)
56 3l11_A E3 ubiquitin-protein li 88.7 0.048 1.6E-06 42.4 -1.4 47 63-116 16-62 (115)
57 4ic3_A E3 ubiquitin-protein li 86.2 0.017 5.6E-07 42.2 -5.1 43 62-116 24-67 (74)
58 3knv_A TNF receptor-associated 85.1 0.17 5.8E-06 41.5 -0.0 48 60-114 29-76 (141)
59 2vje_B MDM4 protein; proto-onc 84.8 0.22 7.4E-06 35.3 0.4 48 62-115 7-55 (63)
60 3hcs_A TNF receptor-associated 84.3 0.43 1.5E-05 39.4 2.1 49 61-116 17-65 (170)
61 2vje_A E3 ubiquitin-protein li 84.1 0.27 9.3E-06 34.9 0.7 47 63-115 9-56 (64)
62 2f42_A STIP1 homology and U-bo 81.2 0.65 2.2E-05 40.2 2.1 50 60-116 104-153 (179)
63 2ecg_A Baculoviral IAP repeat- 80.2 0.17 5.7E-06 36.7 -1.7 44 62-116 25-68 (75)
64 1weu_A Inhibitor of growth fam 78.1 0.94 3.2E-05 35.4 1.9 49 60-114 34-86 (91)
65 2ea5_A Cell growth regulator w 77.8 2.3 7.8E-05 30.5 3.8 45 62-117 15-59 (68)
66 3htk_C E3 SUMO-protein ligase 74.5 1.5 5E-05 40.5 2.5 51 60-116 179-232 (267)
67 1wim_A KIAA0161 protein; ring 69.5 1.9 6.3E-05 32.2 1.6 48 62-114 5-62 (94)
68 2yu4_A E3 SUMO-protein ligase 66.9 4 0.00014 30.7 3.1 46 62-113 7-59 (94)
69 2lri_C Autoimmune regulator; Z 66.9 1.4 4.9E-05 32.1 0.5 48 60-113 10-59 (66)
70 1bor_A Transcription factor PM 65.5 1.2 4E-05 30.5 -0.2 44 62-116 6-49 (56)
71 1weo_A Cellulose synthase, cat 59.7 11 0.00039 29.7 4.4 55 61-118 15-72 (93)
72 3t6p_A Baculoviral IAP repeat- 57.2 0.5 1.7E-05 44.5 -4.4 46 61-117 294-339 (345)
73 2yho_A E3 ubiquitin-protein li 51.5 3.3 0.00011 30.5 0.1 45 62-117 18-62 (79)
74 1wev_A Riken cDNA 1110020M19; 51.5 0.82 2.8E-05 35.0 -3.3 54 62-118 16-77 (88)
75 2bay_A PRE-mRNA splicing facto 46.8 11 0.00038 26.5 2.3 45 64-116 5-50 (61)
76 1f62_A Transcription factor WS 46.0 3 0.0001 28.2 -0.8 46 64-112 2-49 (51)
77 2l43_A N-teminal domain from h 45.7 2.7 9.2E-05 32.1 -1.2 51 61-114 24-76 (88)
78 1wen_A Inhibitor of growth fam 45.7 2.9 0.0001 30.8 -0.9 48 61-114 15-66 (71)
79 2k16_A Transcription initiatio 38.9 2.5 8.6E-05 30.7 -2.2 51 62-115 18-70 (75)
80 2ku3_A Bromodomain-containing 38.1 3.5 0.00012 30.4 -1.6 49 62-113 16-66 (71)
81 1wem_A Death associated transc 33.0 13 0.00043 27.1 0.8 50 62-115 16-72 (76)
82 1wep_A PHF8; structural genomi 24.5 52 0.0018 24.0 2.9 52 61-116 11-66 (79)
83 2l5u_A Chromodomain-helicase-D 23.5 16 0.00053 25.8 -0.2 46 62-113 11-58 (61)
84 1znf_A 31ST zinc finger from X 21.7 29 0.00098 18.1 0.7 12 105-116 2-13 (27)
85 1wew_A DNA-binding family prot 21.6 67 0.0023 23.4 3.0 48 61-113 15-72 (78)
86 2m0f_A Zinc finger and BTB dom 21.3 28 0.00097 18.2 0.7 12 104-115 2-13 (29)
87 1ard_A Yeast transcription fac 20.3 38 0.0013 17.8 1.1 12 105-116 3-14 (29)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.75 E-value=3.3e-19 Score=130.29 Aligned_cols=54 Identities=35% Similarity=0.820 Sum_probs=49.0
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...||||+++.+ ++++.||+|+||++|+|+.||++|++.|++..||+|+++|++
T Consensus 6 ~~~CrIC~~~~~-~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELG-NERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECS-CCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCC-CceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 358999998753 468999999999999999999999999999999999999975
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.8e-17 Score=123.04 Aligned_cols=62 Identities=34% Similarity=0.825 Sum_probs=54.4
Q ss_pred CceeEeccCC-CCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccccccCCCCCC
Q 023293 63 GECRICQEED-SINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTAPPPP 124 (284)
Q Consensus 63 ~~CRIC~eed-~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~yt~ppp~ 124 (284)
..||||+++. ++++++.||+|+|+++++|+.||++|+..+++..|++|++.|......+|+.
T Consensus 16 ~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P~~ 78 (80)
T 2d8s_A 16 DICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSGPS 78 (80)
T ss_dssp CCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCCCC
T ss_pred CCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCCCC
Confidence 4899999764 4567999999999999999999999999999999999999999877655553
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=4.7e-05 Score=55.02 Aligned_cols=48 Identities=25% Similarity=0.618 Sum_probs=35.8
Q ss_pred CCceeEeccCCCCCC--cccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDSINN--LETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~~~~--Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|.||++...... ...|| . ...|..|+.+|++.+. .|.+|+..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C--~---H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPC--K---HAFHRKCLIKWLEVRK--VCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETT--T---EEEEHHHHHHHHHHCS--BCTTTCCBCSS
T ss_pred CCCCcCCCcccCCCCcEEEcCC--C---CEecHHHHHHHHHcCC--cCCCcCccccc
Confidence 458999998754322 23365 3 5689999999998754 89999998854
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.63 E-value=2.1e-05 Score=57.46 Aligned_cols=53 Identities=25% Similarity=0.668 Sum_probs=38.5
Q ss_pred CCCceeEeccCCCC--CCcccccccCCCcccchHHHHHHHHHhcCCccccccccccccccCC
Q 023293 61 QVGECRICQEEDSI--NNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNYTA 120 (284)
Q Consensus 61 ~~~~CRIC~eed~~--~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~yt~ 120 (284)
....|-||++.... .....||. ...|..|+.+|++.+ ..|.+|+.++...-..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCCSCSC
T ss_pred CCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCCcccC
Confidence 34589999987543 22345753 568999999999654 6899999998765433
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.63 E-value=5.7e-05 Score=53.88 Aligned_cols=50 Identities=24% Similarity=0.592 Sum_probs=37.3
Q ss_pred CCCceeEeccCCC--CCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccccc
Q 023293 61 QVGECRICQEEDS--INNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117 (284)
Q Consensus 61 ~~~~CRIC~eed~--~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~ 117 (284)
....|.||++... ......||. ...|..|+.+|++.++ .|.+|+..+...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCSC
T ss_pred CCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccCc
Confidence 3458999998643 334567763 5689999999998754 699999988643
No 6
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.45 E-value=7.4e-05 Score=58.25 Aligned_cols=52 Identities=23% Similarity=0.532 Sum_probs=38.1
Q ss_pred CceeEeccCCCCC-------------C-c---ccccccCCCcccchHHHHHHHHHh---cCCccccccccccccccC
Q 023293 63 GECRICQEEDSIN-------------N-L---ETPCACSGSLKYAHRKCVQHWCNE---KGDITCEICHQQYKPNYT 119 (284)
Q Consensus 63 ~~CRIC~eed~~~-------------~-L---i~PC~CkGSlkyVH~~CL~rW~~~---k~~~~CEICk~~Y~~~yt 119 (284)
..|-||++..... + . ..||. ...|..||.+|+.. +....|.+|+..|.....
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 4899999763211 1 1 45663 57999999999975 457899999999976543
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.26 E-value=0.00014 Score=52.86 Aligned_cols=48 Identities=29% Similarity=0.621 Sum_probs=36.2
Q ss_pred CCceeEeccCCCCC--CcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDSIN--NLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~~~--~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|-||+++.... ....||. ...|..|+.+|++.+ ..|.+|++.+.+
T Consensus 23 ~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSGP 72 (75)
T ss_dssp CCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCCC
T ss_pred CCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCCC
Confidence 45899999875432 2456753 568999999999765 589999988754
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.23 E-value=0.00015 Score=55.20 Aligned_cols=49 Identities=35% Similarity=0.731 Sum_probs=36.7
Q ss_pred CCCceeEeccCCCC--CCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 61 QVGECRICQEEDSI--NNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~--~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
....|-||+++... .....||. ...|..|+.+|++.+ ..|.+|+..+.+
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCCC
Confidence 45689999986433 23456754 679999999999654 589999998753
No 9
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.20 E-value=0.00013 Score=52.09 Aligned_cols=47 Identities=32% Similarity=0.726 Sum_probs=38.0
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
....|.||++...+ ...||. ...|..|+.+|+. ....|.+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~--~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRAD--LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCCS--EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCccC--cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 34589999987655 778874 5589999999997 57889999998864
No 10
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.18 E-value=0.00018 Score=54.47 Aligned_cols=51 Identities=22% Similarity=0.562 Sum_probs=38.5
Q ss_pred CCceeEeccCCCCCCccccc-ccCCCcccchHHHHHHHHHhcCCcccccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPC-ACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNY 118 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC-~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~y 118 (284)
...|-||++.-.... -| .|. .-.|..||.+|++.++..+|.+|+..+...-
T Consensus 15 i~~C~IC~~~i~~g~---~C~~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 15 VKICNICHSLLIQGQ---SCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SCBCSSSCCBCSSSE---ECSSSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCcCcchhhHcccCC---ccCCCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 458999998654221 23 454 5689999999999888899999999987543
No 11
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.00015 Score=54.21 Aligned_cols=27 Identities=22% Similarity=0.698 Sum_probs=23.4
Q ss_pred ccchHHHHHHHHHhcCCcccccccccccc
Q 023293 88 KYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 88 kyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|..||.+|++.+ ..|++|++++..
T Consensus 50 H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 76 (81)
T 2ecl_A 50 HSFHNCCMSLWVKQN--NRCPLCQQDWVV 76 (81)
T ss_dssp CEEEHHHHHHHTTTC--CBCTTTCCBCCE
T ss_pred CccChHHHHHHHHhC--CCCCCcCCCcch
Confidence 679999999999875 489999999864
No 12
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.00044 Score=50.92 Aligned_cols=51 Identities=22% Similarity=0.473 Sum_probs=39.2
Q ss_pred CCCceeEeccCCCC---CCcccccccCCCcccchHHHHHHHHHhc-CCcccccccccccc
Q 023293 61 QVGECRICQEEDSI---NNLETPCACSGSLKYAHRKCVQHWCNEK-GDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~---~~Li~PC~CkGSlkyVH~~CL~rW~~~k-~~~~CEICk~~Y~~ 116 (284)
....|-||++...+ .+...||. ...|..|+.+|++.+ +...|.+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34589999986432 25566762 568999999999876 57899999998864
No 13
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.07 E-value=0.00019 Score=48.75 Aligned_cols=47 Identities=26% Similarity=0.605 Sum_probs=36.3
Q ss_pred CCceeEeccCCC---CCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 62 VGECRICQEEDS---INNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 62 ~~~CRIC~eed~---~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
...|.||++... ......||. ...|..|+.+|++.+ ..|.+|+..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 347999998642 234667763 568999999999886 78999998764
No 14
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.02 E-value=0.00038 Score=50.77 Aligned_cols=49 Identities=24% Similarity=0.511 Sum_probs=38.3
Q ss_pred CCCceeEeccCCCCCCcccc-cccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETP-CACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~P-C~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
....|.||++... ++...| |. ...|+.|+.+|++.++...|.+|+.++.
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCT-TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHh-CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 4458999988654 356666 53 4678999999999888889999999753
No 15
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.96 E-value=0.00022 Score=51.36 Aligned_cols=50 Identities=24% Similarity=0.516 Sum_probs=38.0
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNY 118 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~y 118 (284)
....|.||++... ++...||. ...|..|+.+|+..+ ..|.+|+..+....
T Consensus 14 ~~~~C~IC~~~~~-~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 14 TVPECAICLQTCV-HPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPEDF 63 (71)
T ss_dssp SCCBCSSSSSBCS-SEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCHHH
T ss_pred CCCCCccCCcccC-CCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCHhh
Confidence 3458999998753 34566753 568999999999654 78999999987643
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.93 E-value=0.00072 Score=48.77 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=37.0
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~ 117 (284)
....|.||++...+.....||. ...|..|+.+|++. ...|.+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHHCcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCcc
Confidence 3458999998755422334764 45699999999976 57899999998653
No 17
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.00024 Score=49.95 Aligned_cols=48 Identities=21% Similarity=0.448 Sum_probs=35.5
Q ss_pred CCCceeEeccCCC------CCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 61 QVGECRICQEEDS------INNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 61 ~~~~CRIC~eed~------~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
....|-||++... ......||. ...|..|+.+|++. ...|.+|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 3458999998532 112556763 56899999999987 468999999875
No 18
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.91 E-value=0.00022 Score=48.47 Aligned_cols=48 Identities=27% Similarity=0.558 Sum_probs=34.6
Q ss_pred CCceeEeccCCCC--CCcccccccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 62 VGECRICQEEDSI--NNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 62 ~~~CRIC~eed~~--~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
...|-||+++... .....| .|. ...|..|+.+|++. ...|.+|+.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~-~C~---H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLP-RCG---HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECS-SSC---CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECC-CCC---CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 3479999987432 334455 233 56899999999965 468999998764
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.0013 Score=48.33 Aligned_cols=47 Identities=23% Similarity=0.419 Sum_probs=36.5
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
....|.||++...+ +.+.||. ...|..|+.+|++. ...|.+|+..+.
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN-PVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS-EEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC-eeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 34589999987543 5667764 45699999999975 568999999885
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.77 E-value=0.00056 Score=48.38 Aligned_cols=47 Identities=26% Similarity=0.674 Sum_probs=36.9
Q ss_pred CceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 63 GECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 63 ~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
..|-||++...+.....||. ...|..|+.+|+..+ ..|.+|+..+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCeeCCccccCCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 47999998765444677863 458999999999765 589999998863
No 21
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.64 E-value=0.0017 Score=47.11 Aligned_cols=50 Identities=22% Similarity=0.456 Sum_probs=38.7
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhc----CCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK----GDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k----~~~~CEICk~~Y~~ 116 (284)
....|.||++...+ +...||. ...|..|+.+|+..+ +...|.+|+..+..
T Consensus 18 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLKE-PVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCSS-CEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhCc-ceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34589999987543 4566753 458999999999885 48899999998864
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.63 E-value=0.0014 Score=48.96 Aligned_cols=50 Identities=24% Similarity=0.486 Sum_probs=39.2
Q ss_pred CCCCceeEeccCCCCCCcccc-cccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 60 LQVGECRICQEEDSINNLETP-CACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 60 ~~~~~CRIC~eed~~~~Li~P-C~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
...-.|-||++.-. ++...| |. ...++.||.+|+..++...|.+|+..+.
T Consensus 11 ~~~~~C~IC~~~~~-~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT-DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS-SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc-CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34568999997654 356677 42 4578999999999888899999999873
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.62 E-value=0.0011 Score=47.38 Aligned_cols=51 Identities=18% Similarity=0.407 Sum_probs=38.6
Q ss_pred CCCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHh-cCCcccccccccccc
Q 023293 60 LQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNE-KGDITCEICHQQYKP 116 (284)
Q Consensus 60 ~~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~-k~~~~CEICk~~Y~~ 116 (284)
.....|.||++... ++...||. ...|..|+.+|++. ++...|.+|+..+..
T Consensus 18 ~~~~~C~IC~~~~~-~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ-KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS-SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccC-CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34568999998754 34555652 45899999999975 467899999998864
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.37 E-value=0.0017 Score=45.92 Aligned_cols=49 Identities=14% Similarity=0.349 Sum_probs=36.5
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
....|.||++... ++...||. ...|..|+.+|++ ++...|.+|+..+..
T Consensus 14 ~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC-SPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES-SCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc-CeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 4568999997643 24445654 4579999999997 566789999998764
No 25
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.30 E-value=0.00054 Score=47.43 Aligned_cols=48 Identities=21% Similarity=0.459 Sum_probs=35.6
Q ss_pred CCceeEeccCCC------CCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDS------INNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~------~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|-||++... ......||. ...|..|+.+|++. ...|.+|+..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 458999997532 122456663 56899999999987 5699999998864
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.29 E-value=0.005 Score=44.51 Aligned_cols=50 Identities=26% Similarity=0.601 Sum_probs=38.6
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHh----cCCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNE----KGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~----k~~~~CEICk~~Y~~ 116 (284)
....|.||++...+ +...||. ...|..|+.+|+.. ++...|.+|+..+..
T Consensus 18 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLTQ-PLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCSS-CBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccCC-ceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34589999987543 4556763 45789999999987 458899999999874
No 27
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.24 E-value=0.0033 Score=42.75 Aligned_cols=44 Identities=20% Similarity=0.656 Sum_probs=32.9
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHh-cCCcccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNE-KGDITCEIC 110 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~-k~~~~CEIC 110 (284)
....|.||++...+ +...||. ...|..|+.+|++. ++...|.+|
T Consensus 14 ~~~~C~IC~~~~~~-p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE-PVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS-CCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc-cEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 44589999987543 4556753 45799999999875 567889887
No 28
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.13 E-value=0.0023 Score=50.90 Aligned_cols=27 Identities=15% Similarity=0.527 Sum_probs=23.4
Q ss_pred ccchHHHHHHHHHhcCCcccccccccccc
Q 023293 88 KYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 88 kyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|..||.+|+.. ...|++|+..|..
T Consensus 75 H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 75 HAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 67999999999976 5789999999764
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.0068 Score=42.25 Aligned_cols=45 Identities=20% Similarity=0.469 Sum_probs=33.5
Q ss_pred CCCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhc-CCcccccc
Q 023293 60 LQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK-GDITCEIC 110 (284)
Q Consensus 60 ~~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k-~~~~CEIC 110 (284)
.....|.||++... ++...||. ...|+.|+.+|++.+ +...|.+|
T Consensus 18 ~~~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ-KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS-SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC-CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 34568999998754 35556653 457999999999864 56789988
No 30
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.95 E-value=0.0053 Score=46.11 Aligned_cols=51 Identities=24% Similarity=0.466 Sum_probs=40.3
Q ss_pred CCceeEeccCCC-CCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDS-INNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~-~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|-||++.-. ......||.|. ...++.|+.+|.+. +...|.+|+..|..
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPE 62 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSS
T ss_pred CCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 347999999754 34567889886 45899999998754 67899999999974
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=95.77 E-value=0.0017 Score=46.91 Aligned_cols=50 Identities=26% Similarity=0.502 Sum_probs=38.0
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhc-----CCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK-----GDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k-----~~~~CEICk~~Y~~ 116 (284)
....|.||++...+ +...||. ...|..|+.+|++.+ +...|.+|+..+..
T Consensus 11 ~~~~C~IC~~~~~~-p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTE-PLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSS-CCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCC-eeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 45689999986543 4556753 457999999999873 47899999999864
No 32
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.60 E-value=0.0064 Score=44.04 Aligned_cols=49 Identities=18% Similarity=0.323 Sum_probs=37.3
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
..-.|-||++.-. ++...||. ...++.|+.+|+. ++...|.+|+..+..
T Consensus 7 ~~~~C~IC~~~~~-~Pv~~~Cg-----H~fc~~Ci~~~~~-~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMK-DPVIVSTG-----QTYERSSIQKWLD-AGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCS-SEEEETTT-----EEEEHHHHHHHHT-TTCCBCTTTCCBCSS
T ss_pred ccCCCCCcccccc-CCEEcCCC-----CeecHHHHHHHHH-HCcCCCCCCcCCCCh
Confidence 4558999998654 35666753 5678999999996 357889999998753
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.58 E-value=0.0044 Score=47.70 Aligned_cols=49 Identities=24% Similarity=0.534 Sum_probs=37.9
Q ss_pred CCCceeEeccCCCCCCcc-cccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLE-TPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li-~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
....|-||++...+ +.. .||. ...|..||.+|+..++ ..|.+|+..+..
T Consensus 21 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD-ARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCccCCccccC-ccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 34589999987643 444 6763 4579999999998875 789999999853
No 34
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=95.41 E-value=0.004 Score=44.03 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=35.6
Q ss_pred CCceeEeccCCC------CCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDS------INNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~------~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|-||++... ......||. ...|..|+.+|++.+ ..|.+|+..+..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 348999997531 122556663 468999999999865 589999998864
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.35 E-value=0.0044 Score=47.09 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=35.5
Q ss_pred CCceeEeccCCCCCCccc-ccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDSINNLET-PCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~-PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|.||++...+ +... ||. ...|..|+.+|+.. ...|.+|+..+..
T Consensus 22 ~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI-AMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS-EEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC-cCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 3589999987554 3333 664 46799999999975 4689999998864
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.22 E-value=0.0099 Score=41.76 Aligned_cols=48 Identities=17% Similarity=0.422 Sum_probs=34.8
Q ss_pred CceeEecc-C--CCCCC-cccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 63 GECRICQE-E--DSINN-LETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 63 ~~CRIC~e-e--d~~~~-Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
..|-||++ . ++... +..||. ...|..|+.+|+.. +...|.+|+..+..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 47999998 3 22222 456764 34799999999864 46789999998864
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.06 E-value=0.007 Score=50.14 Aligned_cols=48 Identities=19% Similarity=0.412 Sum_probs=36.0
Q ss_pred CCCceeEeccCCCCCCccc-ccccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 61 QVGECRICQEEDSINNLET-PCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~-PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
....|-||++...+ +... ||. ...|..|+.+|+.. +...|.+|+..+.
T Consensus 53 ~~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKN-TMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCcccChHhhC-cCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 34589999987543 3333 654 56799999999984 4678999999885
No 38
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.04 E-value=0.0046 Score=50.30 Aligned_cols=27 Identities=15% Similarity=0.527 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHHhcCCcccccccccccc
Q 023293 88 KYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 88 kyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|..|+.+|++. ...|++|+.+|..
T Consensus 86 H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 86 HAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------
T ss_pred ceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 67999999999987 4689999999764
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.84 E-value=0.011 Score=45.32 Aligned_cols=48 Identities=27% Similarity=0.560 Sum_probs=36.9
Q ss_pred CceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhc-CCcccccccccccc
Q 023293 63 GECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEK-GDITCEICHQQYKP 116 (284)
Q Consensus 63 ~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k-~~~~CEICk~~Y~~ 116 (284)
..|-||++... ++...||. ...|..|+.+|+..+ +...|.+|+..+..
T Consensus 22 ~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIK-EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCS-SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhc-CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 47999998654 34556763 457899999999865 56789999998764
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.71 E-value=0.016 Score=45.83 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=36.3
Q ss_pred CceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 63 GECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 63 ~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
..|-||++... .+...||. ...|..|+.+|+. .+...|.+|+..+..
T Consensus 53 ~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-RPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-SEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-CcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 47999998654 35556763 4579999999998 455689999999864
No 41
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=94.71 E-value=0.01 Score=57.24 Aligned_cols=56 Identities=20% Similarity=0.538 Sum_probs=40.7
Q ss_pred CCCceeEeccCCCC-CCc-ccccc---cCCCcccchHHHHHHHHHhcCC---------ccccccccccccccC
Q 023293 61 QVGECRICQEEDSI-NNL-ETPCA---CSGSLKYAHRKCVQHWCNEKGD---------ITCEICHQQYKPNYT 119 (284)
Q Consensus 61 ~~~~CRIC~eed~~-~~L-i~PC~---CkGSlkyVH~~CL~rW~~~k~~---------~~CEICk~~Y~~~yt 119 (284)
....|-||++...+ +.+ ...|. |+ +.-|..||.+|++..++ ..|+.|+.+....+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~ 376 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA 376 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred CCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence 45699999986433 222 34574 66 68999999999987533 589999998765553
No 42
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=94.38 E-value=0.0088 Score=48.44 Aligned_cols=44 Identities=30% Similarity=0.716 Sum_probs=34.6
Q ss_pred ceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 64 ECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 64 ~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
.|-||++... .+...||. ...|..|+.+|+.. ...|++|+..+.
T Consensus 55 ~C~iC~~~~~-~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFI-EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCS-SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCC
T ss_pred CCcccCcccC-CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 6999998654 35667763 56899999999865 467999998875
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=94.12 E-value=0.012 Score=45.37 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=35.7
Q ss_pred CCceeEeccCCCCCCccc-ccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDSINNLET-PCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~-PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|-||++.-.+ +... ||. ...|..|+.+|+..+ ..|.+|+..+..
T Consensus 15 ~~~C~IC~~~~~~-p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID-ATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS-EEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred cCCCccCChHHhC-cCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 3489999987543 4443 764 456899999999764 889999998764
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=93.81 E-value=0.027 Score=46.77 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=37.3
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~ 117 (284)
...|-||++... ++...||. ...+..|+.+|+.. +...|.+|+..+...
T Consensus 78 ~~~C~IC~~~~~-~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVY-QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCS-SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhc-CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCCC
Confidence 358999998654 35667774 45689999999985 556899999998653
No 45
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=93.66 E-value=0.031 Score=53.94 Aligned_cols=49 Identities=24% Similarity=0.622 Sum_probs=38.3
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~ 117 (284)
...|.||++... ++...||.-. .|..|+.+|+.. +...|++|+..+...
T Consensus 332 ~~~C~ICle~~~-~pv~lpCGH~-----FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDK-DVKIEPCGHL-----MCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBC-CEEEETTCCE-----ECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCC-CeEEeCCCCh-----hhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 468999998653 4677888644 499999999974 567899999988653
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.39 E-value=0.044 Score=43.00 Aligned_cols=49 Identities=20% Similarity=0.463 Sum_probs=37.2
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
....|-||++... .+...|| . ...+..|+.+|+..++. .|.+|+..+..
T Consensus 17 ~~~~C~IC~~~~~-~p~~~~C--g---H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALR-EAVQTPC--G---HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCS-SEEECTT--S---CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCcCChhhc-CeEECCc--C---ChhhHHHHHHHHhhCCC-CCCCCCCCcCH
Confidence 4458999997654 3455665 3 56899999999987654 89999998865
No 47
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.94 E-value=0.055 Score=48.53 Aligned_cols=51 Identities=22% Similarity=0.557 Sum_probs=39.2
Q ss_pred CCCceeEeccCCCCCCcccccc-cCCCcccchHHHHHHHHHhcCCccccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCA-CSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~-CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~ 117 (284)
....|-||.+--..+ .-|. |. ...|..|+.+|++.++...|+.|+..+...
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCC---cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 367899999754322 3342 65 579999999999988889999999987543
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=92.70 E-value=0.056 Score=42.02 Aligned_cols=49 Identities=22% Similarity=0.468 Sum_probs=37.2
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~ 117 (284)
...|-||++... ++...||. ...+..|+.+|+..+ ...|.+|+..+...
T Consensus 23 ~~~C~IC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILA-DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhc-CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCHh
Confidence 358999998754 35556763 457999999999874 45799999998753
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=92.15 E-value=0.037 Score=42.92 Aligned_cols=50 Identities=20% Similarity=0.468 Sum_probs=35.8
Q ss_pred CCCceeEeccCCC----CCC--cccccccCCCcccchHHHHHHHHHhcCCccccccccccccc
Q 023293 61 QVGECRICQEEDS----INN--LETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117 (284)
Q Consensus 61 ~~~~CRIC~eed~----~~~--Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~ 117 (284)
....|-||++... ... ...|| . ...|..|+.+|++.+ ..|.+|+..+..+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~C--g---H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTEC--G---HVFCSQCLRDSLKNA--NTCPTCRKKINHK 126 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETT--S---BEEEHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCccccccccCcceEeCCC--C---ChhhHHHHHHHHHcC--CCCCCCCCcCChh
Confidence 3457999997532 112 34455 3 679999999999765 4899999998643
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=92.00 E-value=0.13 Score=38.52 Aligned_cols=49 Identities=10% Similarity=0.007 Sum_probs=36.7
Q ss_pred CCCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 60 LQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 60 ~~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
-..-.|-||++--. .+.+.|| | .-.-+.|+++|+.. ..+|.+|+..+..
T Consensus 12 p~~~~CpI~~~~m~-dPV~~~c---G--htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMT-DPVRLPS---G--TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCS-SEEECTT---S--CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred chheECcccCchhc-CCeECCC---C--CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 34568999987543 3677886 3 34568999999985 5689999998763
No 51
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=91.27 E-value=0.11 Score=45.11 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=36.6
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
..-.|-||++--. .|.+.||. .-.-+.|+.+|+..++.. |++|+.++..
T Consensus 207 ~~~~c~i~~~~~~-dPv~~~~g-----h~f~~~~i~~~~~~~~~~-cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMR-EPCITPSG-----ITYDRKDIEEHLQRVGHF-NPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCS-SEEECSSC-----CEEETTHHHHHHHHTCSS-CTTTCCCCCG
T ss_pred cccCCcCcCCHhc-CCeECCCC-----CEECHHHHHHHHHHCCCC-CcCCCCCCch
Confidence 4558999988654 47788873 234578999999876554 9999988853
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=91.19 E-value=0.032 Score=43.28 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=35.7
Q ss_pred CCceeEeccCCC------CCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDS------INNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~------~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|-||++... ......||. ...|..|+.+|++.+ ..|.+|+..+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCcc
Confidence 458999997532 122566764 568999999999765 499999999864
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=91.10 E-value=0.17 Score=39.21 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=36.1
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
..-.|-||++--. .+.+.||. | .-.-+.|+++|+.. ..+|.+|+.++..
T Consensus 21 ~~~~CpI~~~~m~-dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMC-DPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS-SEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred HhcCCcCcccccc-CCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 4568999987543 36777765 1 23558999999975 5689999988863
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.04 E-value=0.064 Score=42.01 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=33.9
Q ss_pred CCceeEeccCCCCCCccc-ccccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 62 VGECRICQEEDSINNLET-PCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~-PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
...|.||++...+ +... ||. ...++.|+.+|+. ..|.+|+..+.
T Consensus 22 ~~~C~IC~~~~~~-pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILRE-PVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSS-CBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred CCCCCCCChHhhC-ccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 4589999986543 4444 763 4568899999987 78999999974
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=88.89 E-value=0.23 Score=38.58 Aligned_cols=49 Identities=10% Similarity=0.016 Sum_probs=36.9
Q ss_pred CCCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 60 LQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 60 ~~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
-..-.|-||++--. .|.+.|| | .-.-+.|+.+|+.. ..+|.+|+.++..
T Consensus 27 p~~~~CpI~~~~m~-dPV~~~c---G--htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT-DPVRLPS---G--TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS-SEEEETT---T--EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc-CCeECCC---C--CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 35668999987543 3677886 3 34669999999973 5789999998753
No 56
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=88.70 E-value=0.048 Score=42.36 Aligned_cols=47 Identities=21% Similarity=0.572 Sum_probs=36.3
Q ss_pred CceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 63 GECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 63 ~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
..|-||++... ++...||. ...+..|+.+|+.. +...|.+|+..+..
T Consensus 16 ~~C~iC~~~~~-~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILV-EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCS-SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCccCCcccC-ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 48999997654 35566764 45899999999964 45789999999864
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=86.19 E-value=0.017 Score=42.25 Aligned_cols=43 Identities=19% Similarity=0.528 Sum_probs=33.4
Q ss_pred CCceeEeccCCCCCCcccccccCCCccc-chHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKY-AHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlky-VH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|.||++... ++...||. .. ....|+.+| ..|.+|+..+..
T Consensus 24 ~~~C~iC~~~~~-~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNI-AIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBC-CEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC-CEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 458999998654 35667874 34 789999999 789999998864
No 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=85.10 E-value=0.17 Score=41.50 Aligned_cols=48 Identities=15% Similarity=0.319 Sum_probs=34.9
Q ss_pred CCCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccc
Q 023293 60 LQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114 (284)
Q Consensus 60 ~~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y 114 (284)
...-.|-||++.-.+ +...||. ...++.|+.+|++. +...|.+|+.+.
T Consensus 29 ~~~~~C~IC~~~~~~-pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRR-PFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSS-EEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcC-cEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCcc
Confidence 345689999986542 4555553 45689999999963 456899999865
No 59
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=84.82 E-value=0.22 Score=35.29 Aligned_cols=48 Identities=15% Similarity=0.452 Sum_probs=33.1
Q ss_pred CCceeEeccCCCCCC-cccccccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 62 VGECRICQEEDSINN-LETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 62 ~~~CRIC~eed~~~~-Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
...|.||++...+.. +..||.=. ..=..|+.+|.+. ...|.+|+.++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHL----VTCFHCARRLKKA--GASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEE----EECHHHHHHHHHT--TCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCH----hHHHHHHHHHHHh--CCcCCCcCchhh
Confidence 458999998654322 23487411 2467999999864 378999999875
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=84.34 E-value=0.43 Score=39.36 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=36.5
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
..-.|-||++...+ +...|| . ....+.|+.+|++.++. .|.+|+..+..
T Consensus 17 ~~~~C~IC~~~~~~-pv~~~C--g---H~fC~~Ci~~~~~~~~~-~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALRE-AVQTPC--G---HRFCKACIIKSIRDAGH-KCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSS-EEECTT--S---CEEEHHHHHHHHHHHCS-BCTTTCCBCCG
T ss_pred CCCCCCCCChhhcC-cEECCC--C---CHHHHHHHHHHHHhCCC-CCCCCccCcch
Confidence 44589999986543 455554 3 45789999999987654 89999988765
No 61
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=84.11 E-value=0.27 Score=34.89 Aligned_cols=47 Identities=19% Similarity=0.414 Sum_probs=32.3
Q ss_pred CceeEeccCCCCCCc-ccccccCCCcccchHHHHHHHHHhcCCccccccccccc
Q 023293 63 GECRICQEEDSINNL-ETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYK 115 (284)
Q Consensus 63 ~~CRIC~eed~~~~L-i~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~ 115 (284)
..|-||++...+.-+ ..||.=. ..=..|+.+|.+. ...|.+|+.++.
T Consensus 9 ~~C~IC~~~~~~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CPiCR~~i~ 56 (64)
T 2vje_A 9 EPCVICQGRPKNGCIVHGKTGHL----MACFTCAKKLKKR--NKPCPVCRQPIQ 56 (64)
T ss_dssp SCCTTTSSSCSCEEEEETTEEEE----EECHHHHHHHHHT--TCCCTTTCCCCC
T ss_pred CCCCcCCCCCCCEEEECCCCCCh----hhHHHHHHHHHHc--CCcCCCcCcchh
Confidence 479999987544322 2387411 1347999999964 457999999875
No 62
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=81.16 E-value=0.65 Score=40.19 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=37.4
Q ss_pred CCCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 60 LQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 60 ~~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
-..-.|-||++--. .|.+.||. .-.=+.|+.+|+...+. .|++|+.++..
T Consensus 104 p~~f~CPI~~elm~-DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR-EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS-SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCC-CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 34568999987544 37777863 34568999999987655 69999988864
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.16 E-value=0.17 Score=36.73 Aligned_cols=44 Identities=18% Similarity=0.477 Sum_probs=31.3
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|.||++... ++...||.=. .....|++++ ..|.+|+.++..
T Consensus 25 ~~~C~IC~~~~~-~~~~~pCgH~----~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI-AIVFVPCGHL----VTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC-CBCCSSSCCC----CBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC-CEEEecCCCH----HHHHHHhhCC------CCCccCCceecC
Confidence 457999998753 4566787421 1578898643 789999998864
No 64
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.12 E-value=0.94 Score=35.37 Aligned_cols=49 Identities=22% Similarity=0.527 Sum_probs=32.1
Q ss_pred CCCCceeEeccCCCCCCccc--ccccCCCcccchHHHHHHHHHh--cCCcccccccccc
Q 023293 60 LQVGECRICQEEDSINNLET--PCACSGSLKYAHRKCVQHWCNE--KGDITCEICHQQY 114 (284)
Q Consensus 60 ~~~~~CRIC~eed~~~~Li~--PC~CkGSlkyVH~~CL~rW~~~--k~~~~CEICk~~Y 114 (284)
.....| ||.+.+. ..|+. -|.|+ ..|.|..|+. +.. ++...|..|...-
T Consensus 34 ~e~~yC-iC~~~~~-g~MI~CD~~dC~--~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SCCCCCSCSSCS--CCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CCEeEecCCCCC--CCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345688 9987654 34543 23354 2689999997 332 4789999997643
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.75 E-value=2.3 Score=30.51 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=31.3
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~ 117 (284)
...|.||++... +....||.=. ..-..|+++ ...|.+|+..+...
T Consensus 15 ~~~C~IC~~~~~-~~v~~pCgH~----~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 15 SKDCVVCQNGTV-NWVLLPCRHT----CLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp SSCCSSSSSSCC-CCEETTTTBC----CSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred CCCCCCcCcCCC-CEEEECCCCh----hhhHHHHhc------CCCCCCCCcchhce
Confidence 458999998654 4677888532 134567763 47899999987643
No 66
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=74.54 E-value=1.5 Score=40.54 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=36.4
Q ss_pred CCCCceeEeccCCCCCCccc-ccccCCCcccchHHHHHHHHHhcCCccccc--ccccccc
Q 023293 60 LQVGECRICQEEDSINNLET-PCACSGSLKYAHRKCVQHWCNEKGDITCEI--CHQQYKP 116 (284)
Q Consensus 60 ~~~~~CRIC~eed~~~~Li~-PC~CkGSlkyVH~~CL~rW~~~k~~~~CEI--Ck~~Y~~ 116 (284)
...-.|-||++--. .|+.. .|. .-.=+.|+.+|+..++...|++ |+..+..
T Consensus 179 ~~el~CPIcl~~f~-DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYE-APLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCS-SEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCccc-CCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 35568999997543 23432 443 2355789999998878899999 9998753
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.47 E-value=1.9 Score=32.23 Aligned_cols=48 Identities=21% Similarity=0.565 Sum_probs=35.1
Q ss_pred CCceeEeccCCCCCCcc--cccccCCCcccchHHHHHHHHHhc---C---Cccccc--ccccc
Q 023293 62 VGECRICQEEDSINNLE--TPCACSGSLKYAHRKCVQHWCNEK---G---DITCEI--CHQQY 114 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li--~PC~CkGSlkyVH~~CL~rW~~~k---~---~~~CEI--Ck~~Y 114 (284)
...|-||+++.....+. .||. ...-+.|+++|+..+ + ...|.. |+..+
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 45799999876544444 3675 457789999999764 2 479999 99884
No 68
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.91 E-value=4 Score=30.69 Aligned_cols=46 Identities=15% Similarity=0.339 Sum_probs=33.5
Q ss_pred CCceeEeccCCCCCCcccc-cccCCCcccchHHHHHHHHHhc----CCccccc--cccc
Q 023293 62 VGECRICQEEDSINNLETP-CACSGSLKYAHRKCVQHWCNEK----GDITCEI--CHQQ 113 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~P-C~CkGSlkyVH~~CL~rW~~~k----~~~~CEI--Ck~~ 113 (284)
.-.|-||++--. .|...| |. .-.-+.||.+|+... +..+|.+ |...
T Consensus 7 ~~~CPI~~~~~~-dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMK-KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCS-SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhc-CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 457999987544 366665 63 345689999999864 4679999 8866
No 69
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=66.85 E-value=1.4 Score=32.12 Aligned_cols=48 Identities=15% Similarity=0.392 Sum_probs=33.4
Q ss_pred CCCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHh--cCCccccccccc
Q 023293 60 LQVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNE--KGDITCEICHQQ 113 (284)
Q Consensus 60 ~~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~--k~~~~CEICk~~ 113 (284)
.....|.||.++++ |+ - |.+=-+..|..||.-.+.. ++.+.|..|...
T Consensus 10 ~~~~~C~vC~~~~~---ll-~--Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTD---VL-R--CTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTT---CE-E--CSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCe---EE-E--CCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34567999986532 33 2 3333479999999777654 578999999754
No 70
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=65.49 E-value=1.2 Score=30.50 Aligned_cols=44 Identities=23% Similarity=0.564 Sum_probs=31.4
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
...|.||++... ++...||. ...+..|+.+ ....|.+|+..+..
T Consensus 6 ~~~C~IC~~~~~-~p~~l~Cg-----H~fC~~Ci~~-----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAK-CPKLLPCL-----HTLCSGCLEA-----SGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCB-CCSCSTTS-----CCSBTTTCSS-----SSSSCSSCCSSSSC
T ss_pred CCCceEeCCccC-CeEEcCCC-----CcccHHHHcc-----CCCCCCcCCcEeec
Confidence 347999998754 35667864 2356778766 36789999998764
No 71
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=59.65 E-value=11 Score=29.71 Aligned_cols=55 Identities=25% Similarity=0.431 Sum_probs=36.2
Q ss_pred CCCceeEeccCC---CCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccccccc
Q 023293 61 QVGECRICQEED---SINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPNY 118 (284)
Q Consensus 61 ~~~~CRIC~eed---~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~y 118 (284)
....|.||-++- .++.+-.-|+=-+ --|=+.|++.=. ..++..|..||.+|+-..
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~--FPvCrpCyEYEr-keG~q~CpqCktrYkr~k 72 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG--FPACRPCYEYER-REGTQNCPQCKTRYKRLR 72 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC--CCCCHHHHHHHH-HTSCSSCTTTCCCCCCCT
T ss_pred CCCccccccCccccCCCCCEEEeeeccC--ChhhHHHHHHHH-hccCccccccCCcccccc
Confidence 457999998752 3444444444221 237788876443 458999999999998443
No 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=57.24 E-value=0.5 Score=44.52 Aligned_cols=46 Identities=20% Similarity=0.569 Sum_probs=33.9
Q ss_pred CCCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~ 117 (284)
....|.||++... ++...||.=. .....|+.+| ..|++|+..+...
T Consensus 294 ~~~~C~IC~~~~~-~~v~lpCgH~----~fC~~C~~~~------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 294 EERTCKVCMDKEV-SVVFIPCGHL----VVCQECAPSL------RKCPICRGIIKGT 339 (345)
T ss_dssp TTCBCTTTSSSBC-CEEEETTCCE----EECTTTGGGC------SBCTTTCCBCCEE
T ss_pred CCCCCCccCCcCC-ceEEcCCCCh----hHhHHHHhcC------CcCCCCCCCccCe
Confidence 3468999998654 3556687532 2677899888 6899999998643
No 73
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=51.54 E-value=3.3 Score=30.48 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=31.9
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKPN 117 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~~ 117 (284)
...|.||++... +....||.=. ..=..|+.+| ..|.+|+..+...
T Consensus 18 ~~~C~IC~~~~~-~~v~~pCgH~----~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEI-NSTFCPCGHT----VCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBC-CEEEETTCBC----CBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccC-cEEEECCCCH----HHHHHHHHhc------CcCCCCCchhhCe
Confidence 358999998654 3566788532 1346788877 3999999998754
No 74
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.45 E-value=0.82 Score=34.98 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=36.4
Q ss_pred CCceeEeccCCC--CCCcccccccCCCcccchHHHHHHHHH------hcCCcccccccccccccc
Q 023293 62 VGECRICQEEDS--INNLETPCACSGSLKYAHRKCVQHWCN------EKGDITCEICHQQYKPNY 118 (284)
Q Consensus 62 ~~~CRIC~eed~--~~~Li~PC~CkGSlkyVH~~CL~rW~~------~k~~~~CEICk~~Y~~~y 118 (284)
...|.+|...+. .+.|+.==.|. +..|..|+.-=+. .++.+.|..|....+..-
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~---~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~ 77 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECH---NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMA 77 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSC---CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCST
T ss_pred CCcCCCCCCCCCCCCCceEECCCCC---CeEcCccCCCcccccccCCCCCCeeCccccchhhhhc
Confidence 348999998653 34454322344 6789999874432 458899999998876543
No 75
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=46.78 E-value=11 Score=26.50 Aligned_cols=45 Identities=9% Similarity=0.197 Sum_probs=30.0
Q ss_pred ceeEeccCCCCCCccc-ccccCCCcccchHHHHHHHHHhcCCcccccccccccc
Q 023293 64 ECRICQEEDSINNLET-PCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQYKP 116 (284)
Q Consensus 64 ~CRIC~eed~~~~Li~-PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y~~ 116 (284)
.|-||++--. ++.+. +| | .-.=+.|+++|++..+ +|.+++++...
T Consensus 5 ~CpIs~~~m~-dPV~~~~s---G--~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 5 LCAISGKVPR-RPVLSPKS---R--TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCTTTCSCCS-SEEEETTT---T--EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EecCCCCCCC-CCEEeCCC---C--cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 5777766433 24444 32 2 3466899999998764 49999988753
No 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=45.95 E-value=3 Score=28.16 Aligned_cols=46 Identities=22% Similarity=0.562 Sum_probs=27.9
Q ss_pred ceeEeccCCCCCCcccccccCCCcccchHHHHHHHHH--hcCCcccccccc
Q 023293 64 ECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCN--EKGDITCEICHQ 112 (284)
Q Consensus 64 ~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~--~k~~~~CEICk~ 112 (284)
.|.||.+.++.+.|+. |.+=-+..|..|+.-=+. .++.+.|..|..
T Consensus 2 ~C~vC~~~~~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLIL---CDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEE---CTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEE---CCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5888887654444442 333346889999842111 246778888854
No 77
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=45.70 E-value=2.7 Score=32.14 Aligned_cols=51 Identities=22% Similarity=0.394 Sum_probs=32.2
Q ss_pred CCCceeEeccCC--CCCCcccccccCCCcccchHHHHHHHHHhcCCcccccccccc
Q 023293 61 QVGECRICQEED--SINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQY 114 (284)
Q Consensus 61 ~~~~CRIC~eed--~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~Y 114 (284)
....|.||.+.+ +.+.| .-|. +=-..+|..|+.-=...++.+.|..|...-
T Consensus 24 ~~~~C~vC~~~~s~~~~~l-l~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVI-LFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEE-EECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCE-EECC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence 345899999764 22333 3332 333578999986333445788899887653
No 78
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=45.70 E-value=2.9 Score=30.81 Aligned_cols=48 Identities=23% Similarity=0.559 Sum_probs=31.1
Q ss_pred CCCceeEeccCCCCCCccc--ccccCCCcccchHHHHHHHHHh--cCCcccccccccc
Q 023293 61 QVGECRICQEEDSINNLET--PCACSGSLKYAHRKCVQHWCNE--KGDITCEICHQQY 114 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~--PC~CkGSlkyVH~~CL~rW~~~--k~~~~CEICk~~Y 114 (284)
....| ||.+.+. +.|+. -|.|. ..+.|..|+. +.. ++...|..|...-
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~--~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCS--CCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCC--CccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34578 8987654 34553 22254 2689999997 332 4788999997643
No 79
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=38.92 E-value=2.5 Score=30.73 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=33.5
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHHh--cCCccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCNE--KGDITCEICHQQYK 115 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~~--k~~~~CEICk~~Y~ 115 (284)
...|.||...+....|+. |.+=-.+.|..|+.--... .+...|..|.....
T Consensus 18 ~~~C~~C~~~~~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBCCSSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCCCCCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 347999987765444543 3333489999998643322 26788999976653
No 80
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=38.08 E-value=3.5 Score=30.42 Aligned_cols=49 Identities=22% Similarity=0.400 Sum_probs=31.3
Q ss_pred CCceeEeccCC--CCCCcccccccCCCcccchHHHHHHHHHhcCCccccccccc
Q 023293 62 VGECRICQEED--SINNLETPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQQ 113 (284)
Q Consensus 62 ~~~CRIC~eed--~~~~Li~PC~CkGSlkyVH~~CL~rW~~~k~~~~CEICk~~ 113 (284)
...|.||.+.+ +++.|+ -|. +=-+.+|..|+.-=...++.+.|..|...
T Consensus 16 ~~~C~vC~~~~s~~~~~ll-~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEE-ECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEE-ECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 34899998764 333443 332 32358899998632344678889888653
No 81
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=33.01 E-value=13 Score=27.10 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=33.5
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHH-------hcCCccccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCN-------EKGDITCEICHQQYK 115 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~-------~k~~~~CEICk~~Y~ 115 (284)
...| ||...+....|+.==.|. .|.|..|+.-=.. ......|+.|.....
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCccCCCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4578 898766555666533455 8999999852211 346889999987654
No 82
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=24.47 E-value=52 Score=23.98 Aligned_cols=52 Identities=17% Similarity=0.346 Sum_probs=34.2
Q ss_pred CCCceeEeccCCC-CCCcccccccCCCcccchHHHHHHHHHh---cCCcccccccccccc
Q 023293 61 QVGECRICQEEDS-INNLETPCACSGSLKYAHRKCVQHWCNE---KGDITCEICHQQYKP 116 (284)
Q Consensus 61 ~~~~CRIC~eed~-~~~Li~PC~CkGSlkyVH~~CL~rW~~~---k~~~~CEICk~~Y~~ 116 (284)
....| ||....+ ...|+.==.|. .|.|..|+.-=-.. -....|+.|.....+
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 34577 8887643 45566533454 79999998632222 267899999987654
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=23.53 E-value=16 Score=25.80 Aligned_cols=46 Identities=20% Similarity=0.542 Sum_probs=30.3
Q ss_pred CCceeEeccCCCCCCcccccccCCCcccchHHHHHHHHH--hcCCccccccccc
Q 023293 62 VGECRICQEEDSINNLETPCACSGSLKYAHRKCVQHWCN--EKGDITCEICHQQ 113 (284)
Q Consensus 62 ~~~CRIC~eed~~~~Li~PC~CkGSlkyVH~~CL~rW~~--~k~~~~CEICk~~ 113 (284)
...|.+|.+.. .|+. |.+=-+..|..||.-=+. .++.+.|..|..+
T Consensus 11 ~~~C~vC~~~g---~ll~---CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQGG---EIIL---CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCCS---SEEE---CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCccCCCCC---cEEE---CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 45899998742 3332 334446899999875332 3578899999753
No 84
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=21.72 E-value=29 Score=18.12 Aligned_cols=12 Identities=17% Similarity=0.816 Sum_probs=9.3
Q ss_pred cccccccccccc
Q 023293 105 ITCEICHQQYKP 116 (284)
Q Consensus 105 ~~CEICk~~Y~~ 116 (284)
..|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 369999988863
No 85
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=21.56 E-value=67 Score=23.42 Aligned_cols=48 Identities=23% Similarity=0.534 Sum_probs=30.5
Q ss_pred CCCceeEeccCCCCCCccccc---ccCCCcccchHHHHHHHHHh-------cCCccccccccc
Q 023293 61 QVGECRICQEEDSINNLETPC---ACSGSLKYAHRKCVQHWCNE-------KGDITCEICHQQ 113 (284)
Q Consensus 61 ~~~~CRIC~eed~~~~Li~PC---~CkGSlkyVH~~CL~rW~~~-------k~~~~CEICk~~ 113 (284)
....| ||...++...||. | .|+ .|.|..|+.-=-.. .....|+.|+..
T Consensus 15 ~~~~C-iC~~~~~~g~MI~-CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQ-CEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEE-CSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCCCEEE-ECCccCC---ccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 45688 8988755555543 3 366 49999998421111 146788888754
No 86
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.27 E-value=28 Score=18.24 Aligned_cols=12 Identities=25% Similarity=0.858 Sum_probs=9.3
Q ss_pred Cccccccccccc
Q 023293 104 DITCEICHQQYK 115 (284)
Q Consensus 104 ~~~CEICk~~Y~ 115 (284)
...|++|+..|.
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 357999998885
No 87
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.33 E-value=38 Score=17.76 Aligned_cols=12 Identities=25% Similarity=0.985 Sum_probs=9.5
Q ss_pred cccccccccccc
Q 023293 105 ITCEICHQQYKP 116 (284)
Q Consensus 105 ~~CEICk~~Y~~ 116 (284)
..|++|+..|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 579999988863
Done!