Query 023294
Match_columns 284
No_of_seqs 34 out of 36
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 04:24:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ha4_A MIX1; TPR-like, helix-t 36.0 20 0.00068 30.3 2.5 19 177-195 91-109 (154)
2 2kl8_A OR15; structural genomi 28.5 37 0.0013 26.2 2.7 26 171-198 43-68 (85)
3 2hth_B Vacuolar protein sortin 21.4 38 0.0013 27.6 1.7 44 96-147 35-78 (140)
4 2kix_A BM2 protein; channel, t 15.0 1.3E+02 0.0044 19.8 2.8 16 67-82 13-28 (33)
5 3p73_A MHC RFP-Y class I alpha 14.3 1.5E+02 0.0053 25.4 3.9 27 151-177 2-38 (275)
6 2qx5_A Nucleoporin NIC96; mRNA 13.3 57 0.0019 32.8 1.0 67 129-199 390-457 (661)
7 2cay_A VPS36 PH domain, vacuol 12.2 69 0.0023 26.3 1.0 86 97-194 49-135 (145)
8 4hhu_A OR280; engineered prote 11.7 1.1E+02 0.0037 26.1 2.1 30 171-202 125-154 (170)
9 1v54_D Cytochrome C oxidase su 11.0 66 0.0022 27.1 0.5 49 42-93 55-103 (147)
10 3kz5_E Protein SOPB; partition 10.9 1.1E+02 0.0036 22.3 1.5 12 267-278 37-48 (52)
No 1
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=36.04 E-value=20 Score=30.34 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=17.2
Q ss_pred ecChhhHHHHHHHHHHHhh
Q 023294 177 VDNPVLLRKVIVTEAAKVI 195 (284)
Q Consensus 177 V~~p~~fRk~Vl~~~s~~~ 195 (284)
|+||+.+||-|++|+....
T Consensus 91 vadpd~~rkevlmqllnvk 109 (154)
T 3ha4_A 91 VADPDEMRKEVLMQLLNVK 109 (154)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhh
Confidence 7999999999999999664
No 2
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=28.46 E-value=37 Score=26.20 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.3
Q ss_pred ceeEeeecChhhHHHHHHHHHHHhhhcc
Q 023294 171 ELQVQGVDNPVLLRKVIVTEAAKVIQNS 198 (284)
Q Consensus 171 ~lqi~GV~~p~~fRk~Vl~~~s~~~~~~ 198 (284)
+|.|+|| |...||-.-.+++++.+++
T Consensus 43 eiritgv--peqvrkelakeaerlakef 68 (85)
T 2kl8_A 43 EIRITGV--PEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp EEEEESC--CHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecC--hHHHHHHHHHHHHHHHHhc
Confidence 6888998 8999999999999998766
No 3
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=21.36 E-value=38 Score=27.56 Aligned_cols=44 Identities=7% Similarity=0.120 Sum_probs=31.5
Q ss_pred hccccceeEeecCceEEeecCCccccccccccccccccCchhhhhhhhhchh
Q 023294 96 KDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCL 147 (284)
Q Consensus 96 kdi~srkLyvT~~~IVYKvsRPs~~P~~Gv~r~Ek~vpL~~V~DiiieQG~L 147 (284)
..+.+-.||||.+-|+| +....-- .=-.+||..|.++=++|+-+
T Consensus 35 ~~~k~G~l~LTshRli~-~d~~~~~-------~s~~lpl~~v~~~e~~~~~f 78 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIW-RDQKNHE-------CCMAILLSQIVFIEEQAAGI 78 (140)
T ss_dssp SCCCCEEEEEESSEEEE-EETTCCS-------CCEEEEGGGEEEEEEECCTT
T ss_pred CCCcCCEEEEecCEEEE-ecCCCCc-------eEEEEEhHHeeeeeeecccc
Confidence 45688899999999998 3221100 01268999999999999863
No 4
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=14.97 E-value=1.3e+02 Score=19.83 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 023294 67 FSISLLLVLAWGVGVF 82 (284)
Q Consensus 67 ~liSlLLvLAWGvGil 82 (284)
...|+|-+.||-+|-|
T Consensus 13 filsalhf~awtighl 28 (33)
T 2kix_A 13 FILSALHFIAWTIGHL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4568889999999965
No 5
>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} PDB: 3p77_A*
Probab=14.25 E-value=1.5e+02 Score=25.42 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=22.6
Q ss_pred hceeEEEEeeeecCCCCC----------CCceeEeee
Q 023294 151 YGIHTFRVESIARGKAAP----------VDELQVQGV 177 (284)
Q Consensus 151 fGihs~riE~ig~~k~~~----------~D~lqi~GV 177 (284)
||-||||---.+.++|+| +||+|+..-
T Consensus 2 ~g~HSL~y~~T~~s~~~~~~p~f~~vg~vDd~qf~~y 38 (275)
T 3p73_A 2 FGSHSLRYFLTGMTDPGPGMPRFVIVGYVDDKIFGTY 38 (275)
T ss_dssp CCEEEEEEEEEEESCCCTTCCSEEEEEEETTEEEEEE
T ss_pred CcccEEEEEEEEECCCCCCCCeEEEEEEECCeEEEEE
Confidence 789999999999998875 788887764
No 6
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=13.34 E-value=57 Score=32.76 Aligned_cols=67 Identities=10% Similarity=0.169 Sum_probs=50.6
Q ss_pred cccccCchhhhhhhhhchhhhhhceeEEEEeeeecCCCCCCCc-eeEeeecChhhHHHHHHHHHHHhhhccc
Q 023294 129 ERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDE-LQVQGVDNPVLLRKVIVTEAAKVIQNSS 199 (284)
Q Consensus 129 Ek~vpL~~V~DiiieQG~Lqs~fGihs~riE~ig~~k~~~~D~-lqi~GV~~p~~fRk~Vl~~~s~~~~~~~ 199 (284)
...+=...|.|.|+|-+-...++| .|+.-|.+.+|-+|. ..+....|+.+|.+.|+.++..-..+.|
T Consensus 390 ~~~~~~~~l~eLvletr~f~~LLG----~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae~~G 457 (661)
T 2qx5_A 390 DVELCHEALRELVLETKEFTVLLG----KIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRADEDG 457 (661)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHC----EECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcccHHHHcC----CcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHHHCC
Confidence 334556779999999999999999 567777778877765 2345567889999999988886665543
No 7
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=12.23 E-value=69 Score=26.31 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=49.2
Q ss_pred ccccceeEeecCceEEeecCCccccccccccccccccCchhhhhhhhhchhhhhhceeEEEEeeeecCCCCCCCceeEee
Q 023294 97 DISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQG 176 (284)
Q Consensus 97 di~srkLyvT~~~IVYKvsRPs~~P~~Gv~r~Ek~vpL~~V~DiiieQG~Lqs~fGihs~riE~ig~~k~~~~D~lqi~G 176 (284)
...+-.+|||++-|||-=..+--+-+ -.+||..|.|+=++|+-+-+ +.+|---.+....+...+++..
T Consensus 49 ~~k~G~lyLTshRIIyv~~~~~~~~S-------fslPL~~v~~~e~~~~~fg~-----s~Ki~l~~~p~~~~~~~~KLsF 116 (145)
T 2cay_A 49 QRQRGRIFLTSQRIIYIDDAKPTQNS-------LGLELDDLAYVNYSSGFLTR-----SPRLILFFKDPSSSTEFVQLSF 116 (145)
T ss_dssp TCSSEEEEEESSEEEEEESSCHHHHC-------EEEEGGGEEEEEEECSSSSS-----SCEEEEEESSCSSTTCCEEEEE
T ss_pred CCCccEEEEEcCeEEEecCCCCcceE-------EEeEhHheeeeeEEcCcccc-----CceEEEEecCCCCCceEEEEEE
Confidence 46788999999999984332211111 16899999999999988543 2233211111111223455542
Q ss_pred e-cChhhHHHHHHHHHHHh
Q 023294 177 V-DNPVLLRKVIVTEAAKV 194 (284)
Q Consensus 177 V-~~p~~fRk~Vl~~~s~~ 194 (284)
= --+.+|..+....+...
T Consensus 117 k~GGa~eF~~~l~~al~~~ 135 (145)
T 2cay_A 117 RKSDGVLFSQATERALENI 135 (145)
T ss_dssp SSSCCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHH
Confidence 1 12367777766655543
No 8
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=11.71 E-value=1.1e+02 Score=26.06 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=25.0
Q ss_pred ceeEeeecChhhHHHHHHHHHHHhhhcccccc
Q 023294 171 ELQVQGVDNPVLLRKVIVTEAAKVIQNSSKNW 202 (284)
Q Consensus 171 ~lqi~GV~~p~~fRk~Vl~~~s~~~~~~~~~~ 202 (284)
+|.|+|| |...||-.-.+++++..++.-+-
T Consensus 125 ~i~itgv--peqvrkelakeaerl~~efni~v 154 (170)
T 4hhu_A 125 VIVITGV--PEQVRKELAKEAERLKAEFNINV 154 (170)
T ss_dssp EEEEESC--CHHHHHHHHHHHHHHHHHHTCEE
T ss_pred EEEEeCC--cHHHHHHHHHHHHHHHHhcceEE
Confidence 4788887 89999999999999998774443
No 9
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=10.99 E-value=66 Score=27.12 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=27.4
Q ss_pred ccceehhhcHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 023294 42 SEEILYAASFEELASNSVKYDTIIWFSISLLLVLAWGVGVFMLLYLPIRRYV 93 (284)
Q Consensus 42 ~e~ILY~ASFeE~~~~~vkYdt~~W~liSlLLvLAWGvGilmLLylPirryv 93 (284)
|-+-||.+||.+.-... +.-|=.|-.+ +...++++|+-.++++=+|.|+
T Consensus 55 EKkAlYrisF~~t~ae~-~~p~gewK~v--~g~v~~~i~~s~~~f~~~r~~v 103 (147)
T 1v54_D 55 EKVELYRLKFKESFAEM-NRSTNEWKTV--VGAAMFFIGFTALLLIWEKHYV 103 (147)
T ss_dssp HHHHHHHHHCSSCHHHH-TCCCSHHHHH--HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccccc-cCCCCchhHH--HHHHHHHHHHHHHHHHHHHHHc
Confidence 45679999996554442 4555667542 3334455555444444445443
No 10
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=10.86 E-value=1.1e+02 Score=22.26 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=9.4
Q ss_pred HHHHHHHHhhcc
Q 023294 267 VKKIELLFEKSQ 278 (284)
Q Consensus 267 VKriE~Lle~~~ 278 (284)
+|+||+||++-+
T Consensus 37 IeKIE~lL~e~~ 48 (52)
T 3kz5_E 37 IEKIEAILKELE 48 (52)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 688999988644
Done!