BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023296
         (284 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
          Length = 443

 Score = 33.5 bits (75), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 92  QKYGRPDDIYLKYRWQPFSCSIPRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHS 151
           +KY RP     +  W+   C+     G    EKF     ++    L+  +    A  I S
Sbjct: 23  EKYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADD--LYEKGVLADLEKAFAAREIKS 80

Query: 152 WAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVRE 192
            A K K  + +   LS    Q+FG+ + +Y +  + DLV++
Sbjct: 81  LASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKK 121


>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
           Flexibly Tethered Dimer Architecture
          Length = 411

 Score = 32.7 bits (73), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 93  KYGRPDDIYLKYRWQPFSCSIPRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHSW 152
           KY RP     +  W+   C+     G    EKF     ++    L+  +    A  I S 
Sbjct: 1   KYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADD--LYEKGVLADLEKAFAAREIKSL 58

Query: 153 APKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVRE 192
           A K K  + +   LS    Q+FG+ + +Y +  + DLV++
Sbjct: 59  ASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKK 98


>pdb|4HTY|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
 pdb|4HU0|A Chain A, Crystal Structure Of A Metagenome-Derived Cellulase Cel5a
           In Complex With Cellotetraose
          Length = 359

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 13/53 (24%)

Query: 225 HTGRSQPFDYIREGRKLYKDMNRLVAFYK------------GLTTWARWVNFN 265
           HT + + FD+ R   + Y  +N  VAFY+            G+ TWA W   N
Sbjct: 158 HTTKGETFDFWRRVSERYNGINS-VAFYEIFNEPTVFNGRLGIATWAEWKAIN 209


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.481 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,142,252
Number of Sequences: 62578
Number of extensions: 347717
Number of successful extensions: 811
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 3
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)