BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023296
         (284 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8BWP8|B3GN1_MOUSE N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase
           OS=Mus musculus GN=B3gnt1 PE=2 SV=1
          Length = 415

 Score = 38.1 bits (87), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 19/102 (18%)

Query: 181 YRTTYLVDLVREPA--GTVLRLDSIKGGNAWRGMDMLIFNTWHWWTHTGRSQPFDYIREG 238
           Y    L +L RE A    V+ +D +     WRG+  ++  + H W  T    P   IR  
Sbjct: 207 YPNNLLRNLAREEANYALVIDVDMVPSEGLWRGLREMLDQSNH-WDGTALVVPAFEIRRS 265

Query: 239 RKLYKDMNRLV---------AFYKGL-------TTWARWVNF 264
           R++  + N LV          FY GL       T ++RWVN 
Sbjct: 266 RRMPMNKNELVQLYQVGEVRPFYYGLCTPCHAPTNYSRWVNL 307


>sp|P41832|BNI1_YEAST Protein BNI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
            GN=BNI1 PE=1 SV=3
          Length = 1953

 Score = 33.9 bits (76), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 92   QKYGRPDDIYLKYRWQPFSCSIPRFNGLYFLEKFRGKKIMFVGDSLSLNQWQSLACMIHS 151
            +KY RP     +  W+   C+     G    EKF     ++    L+  +    A  I S
Sbjct: 1349 EKYPRPHKKLKQLHWEKLDCTDNSIWGTGKAEKFADD--LYEKGVLADLEKAFAAREIKS 1406

Query: 152  WAPKTKYSVVRTAVLSSITFQEFGLQILLYRTTYLVDLVRE 192
             A K K  + +   LS    Q+FG+ + +Y +  + DLV++
Sbjct: 1407 LASKRKEDLQKITFLSRDISQQFGINLHMYSSLSVADLVKK 1447


>sp|Q96JK4|HIPL1_HUMAN HHIP-like protein 1 OS=Homo sapiens GN=HHIPL1 PE=2 SV=2
          Length = 782

 Score = 32.3 bits (72), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 110 SCSIPRFNGLYFLEKFRGKKIMFVGDSLSLNQWQ-SLACMIHS 151
            C  P  NGLY    F   ++M + ++    QWQ S  CM H 
Sbjct: 483 GCEYPNLNGLYIFGDFMSGRLMSLQENPGTGQWQYSEICMGHG 525


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,105,718
Number of Sequences: 539616
Number of extensions: 4782807
Number of successful extensions: 11372
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11371
Number of HSP's gapped (non-prelim): 3
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)