Your job contains 1 sequence.
>023297
MAAATGFLTTSSSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLA
VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF
KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN
SRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG
QTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDRTES
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023297
(284 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2200975 - symbol:AT1G01080 species:3702 "Arabi... 706 1.1e-69 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 296 3.2e-26 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 269 2.3e-23 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 264 7.8e-23 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 251 1.9e-21 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 243 1.3e-20 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 236 7.2e-20 1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 235 9.2e-20 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 200 3.0e-17 2
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 200 3.0e-17 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 201 4.0e-15 1
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 201 5.0e-15 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 188 8.8e-15 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 197 1.0e-14 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 197 1.1e-14 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 196 1.5e-14 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 196 1.5e-14 1
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 193 1.6e-14 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 194 2.3e-14 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 192 3.7e-14 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 191 5.3e-14 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 190 5.5e-14 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 191 8.0e-14 1
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 193 8.0e-14 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 191 9.6e-14 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 191 9.6e-14 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 190 1.7e-13 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 190 1.7e-13 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 190 1.8e-13 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 190 1.8e-13 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 190 1.8e-13 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 190 1.9e-13 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 190 2.2e-13 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 189 3.1e-13 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 189 3.4e-13 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 188 4.7e-13 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 188 5.3e-13 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 188 5.5e-13 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 188 5.7e-13 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 188 6.1e-13 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 188 6.1e-13 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 188 6.1e-13 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 188 6.1e-13 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 188 6.1e-13 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 188 6.2e-13 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 188 6.2e-13 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 188 6.2e-13 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 170 7.1e-13 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 186 8.0e-13 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 187 8.9e-13 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 183 9.6e-13 2
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 186 1.3e-12 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 186 1.3e-12 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 182 2.0e-12 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 182 2.9e-12 1
POMBASE|SPBC4F6.14 - symbol:SPBC4F6.14 "RNA-binding prote... 184 3.3e-12 1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 128 3.7e-12 2
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 163 4.7e-12 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 178 6.1e-12 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 182 6.2e-12 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 182 6.2e-12 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 177 7.3e-12 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 181 8.0e-12 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 161 8.1e-12 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 181 8.4e-12 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 181 8.5e-12 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 181 8.5e-12 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 180 1.1e-11 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 180 1.2e-11 1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 141 1.3e-11 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 180 1.3e-11 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 179 1.5e-11 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 178 1.7e-11 1
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 172 1.8e-11 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 178 2.8e-11 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 156 3.2e-11 1
UNIPROTKB|F1M3H8 - symbol:F1M3H8 "Uncharacterized protein... 155 4.2e-11 1
TAIR|locus:2122368 - symbol:AT4G09040 species:3702 "Arabi... 170 4.7e-11 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 140 4.8e-11 2
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 139 4.9e-11 2
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 140 5.7e-11 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 140 5.7e-11 2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 175 5.7e-11 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 140 6.0e-11 2
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 140 6.1e-11 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 140 6.1e-11 2
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 140 6.6e-11 2
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 140 6.6e-11 2
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 140 6.7e-11 2
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 140 6.9e-11 2
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 140 6.9e-11 2
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 140 6.9e-11 2
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 153 7.2e-11 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 134 7.7e-11 2
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 176 7.9e-11 1
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 172 8.0e-11 1
UNIPROTKB|Q13151 - symbol:HNRNPA0 "Heterogeneous nuclear ... 168 8.9e-11 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 134 9.0e-11 2
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 134 9.0e-11 2
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 134 9.0e-11 2
WARNING: Descriptions of 776 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 138/209 (66%), Positives = 167/209 (79%)
Query: 80 GGNEVDDDSSVE--EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV-SRNPE 136
G E + DS V EP + RPCELYVCN+PRS+DI++LL+MF+PFGTV+SVEV SRNP+
Sbjct: 86 GEAEPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQ 145
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKK 195
TG SRG GY+TMGSINSAK AI +LDG++VGGREMRVR+S+DMN TR N E L S PKK
Sbjct: 146 TGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKK 205
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
I +YES HK+YVGNL W +P+ LRNHF +FGT+VS RVLHDRK RVF F+SF+S
Sbjct: 206 ILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGE 265
Query: 256 ERDAALSLNGTDFRGRTIIVREGVDRTES 284
ERDAALS NGT + GR IIVREG++++ES
Sbjct: 266 ERDAALSFNGTQYEGRRIIVREGIEKSES 294
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 70/197 (35%), Positives = 111/197 (56%)
Query: 81 GNEVDDDSSVEEPRSRARPCE--LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
G+E +++ E+ ++A E LYV NLP + SEL ++F GTV+ V++ + T
Sbjct: 95 GDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTD 154
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIF 197
SRG G++TMGSI AK A+ + S +GGR ++V F + I + +
Sbjct: 155 RSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSY 214
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
V +SPHK+Y GNL W + + L++ FG V+ A+V+++R +R FGFISF S
Sbjct: 215 V-DSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENV 273
Query: 258 DAALS-LNGTDFRGRTI 273
+AL+ +NG + GR +
Sbjct: 274 QSALATMNGVEVEGRAL 290
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 73/215 (33%), Positives = 109/215 (50%)
Query: 75 GKD-NVGGNEVDDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLS 128
G+D ++GG V D S E P +L+V NLP D L +F+ GTV
Sbjct: 82 GEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEI 141
Query: 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
EV N +T SRG G++TM ++ A+ A+ + +V GR + V + SR
Sbjct: 142 SEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSR------ 195
Query: 189 LISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
P ++ VY++ ++YVGNL W V L F G VV ARV+ DR+ +R FGF
Sbjct: 196 ---PERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGF 252
Query: 249 ISFSSDAERDAALS-LNGTDFRGRTIIVREGVDRT 282
+ S++ E + A++ L+G + GR I V +RT
Sbjct: 253 VQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERT 287
Score = 136 (52.9 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 36/111 (32%), Positives = 52/111 (46%)
Query: 73 INGKDNVGGNEVDDDSSVE-EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+NG+ S E +PR +YV NLP D L +F G V+ V
Sbjct: 179 VNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARV 238
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+ ETG SRG G++ M + N AI ALDG ++ GR ++V + + R
Sbjct: 239 VSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 74/195 (37%), Positives = 104/195 (53%)
Query: 83 EVDDDSS-VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
E DD +S V +P + +LY NLP + D + L ++ + F VEV N +TG SR
Sbjct: 68 EKDDGASAVLDPPAAVNT-KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSR 126
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G ++TM ++ I LDG++ GR ++V F+ + N E L P E+
Sbjct: 127 GFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA---DKPKPNKEPLY-P-------ET 175
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
HKL+VGNLSW V E L F G VV ARV+ D +R +GF+ +SS AE + AL
Sbjct: 176 EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETAL 235
Query: 262 -SLNGTDFRGRTIIV 275
SL+G + GR I V
Sbjct: 236 ESLDGFELEGRAIRV 250
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 71/205 (34%), Positives = 103/205 (50%)
Query: 78 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
+V V + + EP A+ L+V NL + L +F+ GTV EV N ET
Sbjct: 131 DVSEGAVSERAEFPEPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRET 187
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
SRG G++TM S++ A+ A+ + D+ GR + V + SR A P+
Sbjct: 188 DQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERA------PR--- 238
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
VYE ++YVGNL W V L F G VV ARV++DR+ +R FGF++ S E
Sbjct: 239 VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDEL 298
Query: 258 DAALS-LNGTDFRGRTIIVREGVDR 281
+ A+S L+G + GR I V +R
Sbjct: 299 NEAISALDGQNLEGRAIRVNVAEER 323
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 71/217 (32%), Positives = 111/217 (51%)
Query: 83 EVDDD--SSVEEPRSRARPCEL--YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
EV++D + V P+ ++ +L +V NLP + D ++L ++F+ G V VEV + TG
Sbjct: 70 EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITG 129
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
SRG G++TM S++ + A +G ++ GR +RV R + P+ F
Sbjct: 130 RSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKRE---DGFSRGPRSSFG 186
Query: 199 YE-------------SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
S +++YVGNLSW V L + F G VV ARV++DR ++
Sbjct: 187 SSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKG 246
Query: 246 FGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
FGF+++ S E ++A SL+G D GR I V E R
Sbjct: 247 FGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 64/196 (32%), Positives = 106/196 (54%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E ++ + +P S A +Y+ N+PR+ +L ++ + G V V+V + +G SR
Sbjct: 60 ETEEKPAALDPSSEAAR-RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G+ TM S+ A + L+G+ V GRE++V + + + + L S FV +SP
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSA-FV-DSP 176
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
+K+YVGNL+ V E L N F G VVSA+V + FGF++FSS+ + +AA+
Sbjct: 177 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIV 236
Query: 262 SLNGTDFRGRTIIVRE 277
+LN + G+ I V +
Sbjct: 237 ALNNSLLEGQKIRVNK 252
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 67/205 (32%), Positives = 108/205 (52%)
Query: 76 KDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
K+ E + EE ++ +L+V NLP S ++++ E+F GTV +VE+ R
Sbjct: 71 KETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK 130
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-RNAEALISPPK 194
+ G +RG ++TM S A+ AI D V GR + V F+ T ++ L SP
Sbjct: 131 D-GKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAP 189
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVLH-DRKGQTTRVFGFISFS 252
++ HKLYV NL+W + LR F VSARV+ D +G+++ +GF+SF+
Sbjct: 190 G----DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSG-YGFVSFA 244
Query: 253 SDAERDAALS-LNGTDFRGRTIIVR 276
+ E + A++ LNG + GR I ++
Sbjct: 245 TREEAENAITKLNGKEIMGRPITLK 269
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 200 (75.5 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 58/181 (32%), Positives = 92/181 (50%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S P L+V L + D + L F+ G V+ V TG SRG GY+ S ++A
Sbjct: 163 STEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV-YESPHK--LYVGNLS 211
+ A+ + G ++ GR + ++DM++ +A + K + +SP L++GNLS
Sbjct: 223 EKALEEMQGKEIDGRPI----NLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLS 278
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270
+ ++L N FG +G V+S RV Q + FG++ FSS E AAL ++NG G
Sbjct: 279 FNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEG 338
Query: 271 R 271
R
Sbjct: 339 R 339
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/102 (28%), Positives = 56/102 (54%)
Query: 85 DDDSSVEEPRSRARPCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
++D + + S++ P + L++ NL + + L +F +G V+S V +P+T +G
Sbjct: 254 NNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGF 313
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN 185
GY+ S++ AK A+ A++G + GR R+ FS ++ N
Sbjct: 314 GYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNNN 355
Score = 121 (47.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E P L+VG LSW + L+ F G V+ ARV+ +R +R +G++ F S + +
Sbjct: 165 EEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEK 224
Query: 260 ALS-LNGTDFRGRTI 273
AL + G + GR I
Sbjct: 225 ALEEMQGKEIDGRPI 239
Score = 36 (17.7 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 82 NEVDDDSSVEEPRSRARPCE 101
++ D DS EE S+ R E
Sbjct: 126 SDSDSDSDSEEEPSKKRKAE 145
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 200 (75.5 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 58/181 (32%), Positives = 92/181 (50%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S P L+V L + D + L F+ G V+ V TG SRG GY+ S ++A
Sbjct: 163 STEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV-YESPHK--LYVGNLS 211
+ A+ + G ++ GR + ++DM++ +A + K + +SP L++GNLS
Sbjct: 223 EKALEEMQGKEIDGRPI----NLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLS 278
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270
+ ++L N FG +G V+S RV Q + FG++ FSS E AAL ++NG G
Sbjct: 279 FNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEG 338
Query: 271 R 271
R
Sbjct: 339 R 339
Score = 127 (49.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/102 (28%), Positives = 56/102 (54%)
Query: 85 DDDSSVEEPRSRARPCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
++D + + S++ P + L++ NL + + L +F +G V+S V +P+T +G
Sbjct: 254 NNDRAKQYGDSQSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGF 313
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN 185
GY+ S++ AK A+ A++G + GR R+ FS ++ N
Sbjct: 314 GYVQFSSVDEAKAALEAMNGEYIEGRPCRLDFSTPRDNTNNN 355
Score = 121 (47.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E P L+VG LSW + L+ F G V+ ARV+ +R +R +G++ F S + +
Sbjct: 165 EEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEK 224
Query: 260 ALS-LNGTDFRGRTI 273
AL + G + GR I
Sbjct: 225 ALEEMQGKEIDGRPI 239
Score = 36 (17.7 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 82 NEVDDDSSVEEPRSRARPCE 101
++ D DS EE S+ R E
Sbjct: 126 SDSDSDSDSEEEPSKKRKAE 145
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 201 (75.8 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 54/168 (32%), Positives = 89/168 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + +TG SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQ-ERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 310 LRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 164 (62.8 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 54/183 (29%), Positives = 90/183 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A AI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETQEAANRAIQTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + K+ + + +Y+ N + + LR
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-RERE--LEYGAKVMEFTN---VYIKNFGEDMDDKRLRE 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG +S +V+ D G++ R FGF+++ + E A+S +NG + GR I V
Sbjct: 210 IFSAFGNTLSVKVMMDDTGRS-RGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RIE 271
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 201 (75.8 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 65/212 (30%), Positives = 102/212 (48%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
N V +D + + PR EL++ +LP S L E F + V +P+T S+
Sbjct: 25 NNVQEDGATQ-PRR-----ELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSK 78
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS------ID--MNSRTRNAEALISPP 193
G G++T + AK A+ L+GS G++++V ++ +D + +AEAL
Sbjct: 79 GYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRHRVVDETVGKSVPSAEALERKK 138
Query: 194 KKIF--VYESPHKLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
++ P KL V NL W++K PEDL HF FG V V +KG FGF+
Sbjct: 139 QREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKV--KYVTLPKKGSQLAGFGFVV 196
Query: 251 FSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281
+ AL ++NG + GRT+ V V++
Sbjct: 197 LRGKKNAEKALEAVNGKEVDGRTLAVDWAVEK 228
Score = 97 (39.2 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 29/106 (27%), Positives = 53/106 (50%)
Query: 75 GKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE-LLEMFKPFGTVLSVEVSR 133
GK ++ E+ ++ +P +L V NLP S E L F+ FG V V +
Sbjct: 125 GKSVPSAEALERKKQREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTL-- 182
Query: 134 NPETGIS-RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
P+ G G G++ + +A+ A+ A++G +V GR + V ++++
Sbjct: 183 -PKKGSQLAGFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWAVE 227
Score = 74 (31.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
+++ NL + E L +HF +FG + AR++ D + + R GF+ F
Sbjct: 311 IFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCF 357
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 18 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 76
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 77 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 135
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 136 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 188
Score = 112 (44.5 bits), Expect = 0.00035, P = 0.00035
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALS 262
+Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF DA++ A
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQK-AVDE 83
Query: 263 LNGTDFRGRTIIVREGVDRTE 283
+NG + G+ I V + E
Sbjct: 84 MNGKELNGKQIYVGRAQKKVE 104
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 197 (74.4 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 54/169 (31%), Positives = 92/169 (54%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQM--KQDRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 179 (68.1 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 56/183 (30%), Positives = 92/183 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A+NAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHEAAQNAISTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREVELGARAMEFT-----NIYVKNLHVDVDEQRLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G + R FGF++F E + A +++NG + GR + V
Sbjct: 210 LFSQFGKMLSVKVMRDDSGHS-RGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 54/168 (32%), Positives = 90/168 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + ++G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ S + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQ-ERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 310 LRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 165 (63.1 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 54/183 (29%), Positives = 90/183 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A AI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-EHG-SRGYGFVHFETHEAANRAIQTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + K+ + + +Y+ N + + LR
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-RERE--LEYGAKVMEFTN---VYIKNFGEDMDDKRLRE 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG +S +V+ D G++ R FGF+++ + E A+S +NG + GR I V
Sbjct: 210 IFSAFGNTLSVKVMMDDSGRS-RGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RIE 271
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 196 (74.1 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 59/197 (29%), Positives = 96/197 (48%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P +R + +++ NL S D L E F FGT+LS +V+ + TG S+G G++
Sbjct: 124 SNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQ 182
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
SA+ AI L+G + +++ V I R R+ P F +YV
Sbjct: 183 FEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYV 233
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGT 266
NL + ++LR FG+FG + SA V+ D+ G + R FGF++F ++A A +NG
Sbjct: 234 KNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS-RCFGFVNFECTEAAASAVEKMNGI 292
Query: 267 DFRGRTIIVREGVDRTE 283
+ V ++E
Sbjct: 293 SLGDDVLYVGRAQKKSE 309
Score = 166 (63.5 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 51/178 (28%), Positives = 88/178 (49%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R +YV NLP+ EL + F FG + S V R+ ++G SR G++
Sbjct: 220 DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFEC 278
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVG 208
+A +A+ ++G +G + V + + R ++I +E LY+
Sbjct: 279 TEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQ-ERINRFEKSQGANLYLK 337
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
NL +V E L+ F +G V S++V+ + +G + R FGF+++S+ E ALS +NG
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMS-RGFGFVAYSNPEEALRALSEMNG 394
Score = 124 (48.7 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++G +G + + + + R + +AL S
Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 196 (74.1 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 64/198 (32%), Positives = 103/198 (52%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SS + R+ L+V NL +S D L E F GT++S +V+ + G SRG G++
Sbjct: 122 SSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQ 180
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ +SAKNAI L+G + +++ V + R A+ K F +YV
Sbjct: 181 FDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAAD------KMKFT-----NVYV 229
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
NLS A ++L+ FG++G++ SA V+ D G++ R FGF++F + DA R A +LNG
Sbjct: 230 KNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKS-RCFGFVNFENPEDAAR-AVEALNG 287
Query: 266 TDFRGRTIIVREGVDRTE 283
F + V + ++E
Sbjct: 288 KKFDDKEWYVGKAQKKSE 305
Score = 167 (63.8 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 53/177 (29%), Positives = 85/177 (48%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C LYV +L + S+L + F V+SV V R+ T S G GY+ + + A+ A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ S + G+ +R+ +S +S R+ L+V NL +V + L
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTL 150
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
F GT+VS +V D GQ+ R +GF+ F + D+ ++A LNG + I V
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQS-RGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 159 (61.0 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 56/190 (29%), Positives = 87/190 (45%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E + + +YV NL + EL F +G++ S V R+ + G SR G++ +
Sbjct: 216 ESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFEN 274
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESPHKLY 206
A A+ AL+G +E V + + R +R E S F LY
Sbjct: 275 PEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKF---DGLNLY 331
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL V E LR F FGT+ S +V+ D G T++ GF++FS+ +E L+ +NG
Sbjct: 332 VKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSG-TSKGSGFVAFSAASEASRVLNEMNG 390
Query: 266 TDFRGRTIIV 275
G+ + V
Sbjct: 391 KMVGGKPLYV 400
Score = 126 (49.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + +L E+F FGT+ S +V R+P +G S+G G++ + + A + +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+G VGG+ + V + R +A S + F+
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFI 425
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 57/181 (31%), Positives = 92/181 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL EL E G VL+ E+ P G+S+GC + + A+ AI L
Sbjct: 79 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPN-GLSKGCAIIEYSTAEEARTAIKTL 137
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GR + +R + N+R ++ S E +L+VGNL + V+ +DL++
Sbjct: 138 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLKD 197
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F + G+V+ A + +++G++ R G + SS E A+ L+ TDF GRT+ VR +D
Sbjct: 198 LFRQAGSVIRADIQMNQEGRS-RGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVR--LD 254
Query: 281 R 281
R
Sbjct: 255 R 255
Score = 118 (46.6 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP + +L ++F+ G+V+ ++ N E G SRG G + M S+ A +AI
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQM 238
Query: 161 LDGSDVGGREMRVR 174
L +D GR + VR
Sbjct: 239 LHNTDFMGRTLEVR 252
Score = 113 (44.8 bits), Expect = 0.00078, P = 0.00078
Identities = 30/99 (30%), Positives = 52/99 (52%)
Query: 79 VGGN-EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
+G N +V+D P C +YV NLP + LL++F G+V+ ++ P T
Sbjct: 289 LGANTQVEDLVYHAYPHGPCSDC-IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-T 346
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
G S+G G + + N A ++I L+G GGR +++ ++
Sbjct: 347 GRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 385
Score = 111 (44.1 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-- 262
+YVGNL WA +L + F G+V+ AR+ ++ G++ + FG + F + E DAA S
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRS-KGFGVVQFEN--ENDAASSIE 368
Query: 263 -LNGTDFRGRTI 273
LNG + GR +
Sbjct: 369 KLNGYRYGGRPL 380
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 194 (73.4 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 55/169 (32%), Positives = 92/169 (54%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ S R E L ++ Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQSELKRRFEQL--KQDRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 176 (67.0 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 55/183 (30%), Positives = 90/183 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + + G SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAQQAITTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREVELGARAMEFT-----NIYVKNLHVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F RFG ++S +V+ D G + R FGF++F E + A + +NG + GR + V
Sbjct: 210 LFSRFGKMLSVKVMRDDSGHS-RGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 192 (72.6 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 52/168 (30%), Positives = 87/168 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + +G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQ-ERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +GT+ S +V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 310 LRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 157 (60.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 51/183 (27%), Positives = 90/183 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A AI +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + K+ + + +Y+ N + + L+
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-RERE--LEYGAKVMEFTN---VYIKNFGEDMDDKRLKE 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG +S +V+ D G++ R FGF+++ + E A++ +NG + GR + V
Sbjct: 210 IFSAFGNTLSVKVMMDNSGRS-RGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RIE 271
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 191 (72.3 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 54/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L E+F FG LSV+V + E+G S+G G+++
Sbjct: 17 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 75
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 76 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 134
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 135 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 187
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 190 (71.9 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 57/184 (30%), Positives = 93/184 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L E F PFG ++S +V + E G S+G G++ +A AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEE-G-SKGYGFVHYQDQRAADRAIEEM 157
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + + V RF + + R AE P + F +Y+ N + E LR
Sbjct: 158 NGKLLRDSTLFVARFK---SRKDREAELREKPAE--FT-----NVYIKNFGDDMDDESLR 207
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGV 279
+ F ++G +S +V+ D G++ R FGF+SF S A ++A +NG D G+TI V
Sbjct: 208 SVFSKYGQTLSVKVMKDASGKSKR-FGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQ 266
Query: 280 DRTE 283
+ E
Sbjct: 267 KKVE 270
Score = 177 (67.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 52/179 (29%), Positives = 87/179 (48%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E R +P E +Y+ N D L +F +G LSV+V ++ +G S+ G+++
Sbjct: 179 EAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSF 237
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYV 207
S +AKNA+ ++G D+ G+ + V + R + + KK + KLY+
Sbjct: 238 DSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYI 297
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
NL + E LR F FG++ +V+ + GQ+ + FG I F S +A A +NG
Sbjct: 298 KNLDDTIDDETLRKEFSVFGSICRVKVMQEA-GQS-KGFGLICFFSPEAAAKAMAEMNG 354
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 47/183 (25%), Positives = 85/183 (46%)
Query: 95 SRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
++ R LYV +L D++E L F G VLS+ + R+ + S G GY+ +
Sbjct: 5 TKYRAASLYVGDLHE--DVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVG 62
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ A+ ++ + G+ +R+ +S R+A L +K + +++ NL
Sbjct: 63 DAQKALETMNFDLIKGKSIRLMWS------QRDA-CL----RKSGI----GNVFIKNLDK 107
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT 272
++ + L HF FG ++S++V+ D +G F A+R A +NG R T
Sbjct: 108 SIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADR-AIEEMNGKLLRDST 166
Query: 273 IIV 275
+ V
Sbjct: 167 LFV 169
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 191 (72.3 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 54/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L E+F FG LSV+V + E+G S+G G+++
Sbjct: 121 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 179
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 238
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 239 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 291
Score = 178 (67.7 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 62/211 (29%), Positives = 103/211 (48%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 11 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 69
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 70 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 123
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L+ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 124 KEFT-----NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 177
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 178 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 207
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 193 (73.0 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 55/176 (31%), Positives = 92/176 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V N P + D + + ++F +G ++ + R C YL + +A +A+ AL
Sbjct: 907 LFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFC-YLQFKTSVAAHSAL-AL 964
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VG G + V+ S + RN P +YE +++V N++W+ +DL+
Sbjct: 965 DGSAVGNGLHLVVKISDPSRKQDRNG------P----IYEG-REIHVSNVNWSASEDDLK 1013
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
F RFGTV R+ G + + FG++ FSS E AAL+++ +FRGR + V+
Sbjct: 1014 ELFSRFGTVELVRLPRKVDGGS-KGFGYVVFSSKEEATAALAMHEQEFRGRPLHVK 1068
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 191 (72.3 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 54/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L E+F FG LSV+V + E+G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 178 (67.7 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 62/211 (29%), Positives = 103/211 (48%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L+ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 242 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 191 (72.3 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 54/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L E+F FG LSV+V + E+G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 178 (67.7 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 62/211 (29%), Positives = 103/211 (48%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L+ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 242 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 190 (71.9 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 54/169 (31%), Positives = 91/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A+ +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQM--KQDRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFAPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 173 (66.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 57/184 (30%), Positives = 92/184 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + + G SRG G++ + +A+NAI +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-DHG-SRGFGFVHFETHEAAQNAIRTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARALEFT-----NIYVKNLHVDVDERCLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIVREGV 279
F +FG ++S +V+ D G + R FGF++F DA++ A +NG + GR + V
Sbjct: 210 LFSQFGKILSVKVMRDDSGHS-RGFGFVNFEKHEDAQK-AVTDMNGKEVSGRLLYVGRAQ 267
Query: 280 DRTE 283
R E
Sbjct: 268 KRVE 271
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 190 (71.9 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 53/169 (31%), Positives = 91/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ +
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQM--KQDRLRRYQGVN-LYVKNLDDSIDDD 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 177 (67.4 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 55/183 (30%), Positives = 91/183 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V+ + E G SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETHEAAQQAINTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARALEFT-----NIYVKNLPVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G + R FGF++F E + A + +NG + GR +
Sbjct: 210 LFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 190 (71.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 53/168 (31%), Positives = 87/168 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L +F FG LSV V + E G SRG G++ + A+ A+ +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ GR + R + ++ + I ++I Y+ + LYV NL ++ E
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQ-ERIQRYQGVN-LYVKNLDDSIDDEK 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +GT+ SA+V+ D G +R FGF+ FSS E A++ +NG
Sbjct: 310 LRKEFAPYGTITSAKVMTD--GGHSRGFGFVCFSSPEEATKAVTEMNG 355
Score = 167 (63.8 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 52/183 (28%), Positives = 88/183 (48%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ N+ S D L + F FG +LS +V + E G S+G G++ + +A AI +
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAANRAIETM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + F +Y+ N + E L+N
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-KEREAEMGAKAVEFT-----NVYIKNFGEDIDSEKLKN 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F FG +S V+ D +G++ R FGF++F + + R A +NG + GR + V
Sbjct: 210 IFTEFGKTLSVCVMTDERGRS-RGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RLE 271
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 190 (71.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 52/169 (30%), Positives = 91/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 355
Score = 168 (64.2 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 52/184 (28%), Positives = 92/184 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E+L+
Sbjct: 159 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDENLK 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G++ + FGF+S+ + + A+ +NG + G+ I V
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKS-KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 190 (71.9 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 52/169 (30%), Positives = 91/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 355
Score = 167 (63.8 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E L+
Sbjct: 159 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDESLK 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G++ + FGF+S+ + + A+ +NG + G+ I V
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKS-KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 190 (71.9 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 65/210 (30%), Positives = 101/210 (48%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R ++V NL RS D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + A+ AI ++G + R++ V RF + R R AE +
Sbjct: 134 ENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFK---SRRDRQAE--LGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K F +Y+ NL + E L++ F RFG +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKS-KGFGFVSFERH 241
Query: 255 AE-RDAALSLNGTDFRGRTIIVREGVDRTE 283
+ R A +NG D G+ I V + E
Sbjct: 242 EDARKAVDEMNGKDLNGKQIYVGRAQKKVE 271
Score = 180 (68.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 54/184 (29%), Positives = 92/184 (50%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ NL D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPK-KIFVYESPHK----- 204
A+ A+ ++G D+ G+++ R + ++ + ++ + K KI
Sbjct: 244 ARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQG 303
Query: 205 --LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LYV NL + E LR F FGT+ SA+V + G ++ FGF+ FSS E A++
Sbjct: 304 VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVT 361
Query: 263 -LNG 265
+NG
Sbjct: 362 EMNG 365
Score = 114 (45.2 bits), Expect = 0.00095, P = 0.00095
Identities = 45/174 (25%), Positives = 73/174 (41%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G + + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IFV NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIFVK---------NLDRSIDSKTLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V+ D G F +AER A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAER-AIEKMNGMFLNDRKVFV 170
Score = 113 (44.8 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 31/97 (31%), Positives = 48/97 (49%)
Query: 81 GNEVDDDSSVEE-PRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE 136
G D +E+ P+ R+ C+ LYV NL D L + F PFGT+ S +V+ E
Sbjct: 281 GQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTM--E 338
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
G S+G G++ S A A+ ++G V + + V
Sbjct: 339 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 375
Score = 45 (20.9 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
N+S A+ P + F G S V H +T++ G
Sbjct: 460 NMSSAIHPSNTMPSFSTSGPTSSQAVRHRTASTSTQMMG 498
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 190 (71.9 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 52/169 (30%), Positives = 91/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 292 NGKEISGKVIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 348
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 349 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 395
Score = 167 (63.8 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 198
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E L+
Sbjct: 199 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDESLK 248
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G++ + FGF+S+ + + A+ +NG + G+ I V
Sbjct: 249 ELFSQFGKTLSVKVMRDPSGKS-KGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 307
Query: 280 DRTE 283
+ E
Sbjct: 308 KKVE 311
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 189 (71.6 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 52/169 (30%), Positives = 90/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 355
Score = 162 (62.1 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 51/184 (27%), Positives = 92/184 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + ++A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 159 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGDDMDDERLK 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F ++G +S +V+ D G++ + FGF+SF + + A+ +NG D G+ + V
Sbjct: 209 ELFSKYGKTLSVKVMTDPTGKS-KGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 189 (71.6 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 54/176 (30%), Positives = 85/176 (48%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S EL ++F FG S + R+ E G S+G G++ + + A A+ AL
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP-HKLYVGNLSWAVKPEDLR 220
+G +E V + + R + K +S LYV NL +V + LR
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
HF FGT+ S +V+ D G +R GF++FS+ E A+ T+ G+ I+ +
Sbjct: 345 EHFAPFGTITSCKVMRDPSG-VSRGSGFVAFSTPEEATRAI----TEMNGKMIVTK 395
Score = 183 (69.5 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 60/198 (30%), Positives = 100/198 (50%)
Query: 89 SVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SV +P R +++ NL +S D L E F FG +LS +V+ +P +G S+G G++
Sbjct: 121 SVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQ 179
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ +A+ AI L+G + +++ V + R + E K F +YV
Sbjct: 180 YDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGE------KVKFT-----NVYV 228
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
NLS ++ E+L FG FG S ++ D +G++ + FGF++F S DA R A +LNG
Sbjct: 229 KNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKS-KGFGFVNFENSDDAAR-AVDALNG 286
Query: 266 TDFRGRTIIVREGVDRTE 283
F + V + ++E
Sbjct: 287 KTFDDKEWFVGKAQKKSE 304
Score = 147 (56.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 47/175 (26%), Positives = 80/175 (45%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L E F G V+SV V R+ T S G GY+ + A A+ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +RV +S+ S ++ +++ NL ++ + L
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVG---------------NIFIKNLDKSIDHKALHE 151
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F FG ++S +V D GQ+ + +GF+ + +D A+ LNG + + V
Sbjct: 152 TFSAFGPILSCKVAVDPSGQS-KGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 135 (52.6 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 32/110 (29%), Positives = 56/110 (50%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E +++ LYV NL S +L E F PFGT+ S +V R+P +G+SRG G++
Sbjct: 314 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFV 372
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI 196
+ A AI ++G + + + V + R +A S + +
Sbjct: 373 AFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPV 422
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 188 (71.2 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 52/169 (30%), Positives = 90/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 153
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 154 NGKEISGKIIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 210
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 211 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 257
Score = 166 (63.5 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E L+
Sbjct: 61 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDESLK 110
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G++ + FGF+S+ + + A+ +NG + G+ I V
Sbjct: 111 ELFSQFGKTLSVKVMRDPNGKS-KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 169
Query: 280 DRTE 283
+ E
Sbjct: 170 KKVE 173
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 188 (71.2 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 140 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 198
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 199 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 257
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 258 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 310
Score = 179 (68.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 62/211 (29%), Positives = 104/211 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 30 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 88
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 89 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 142
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 143 KEFT-----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 196
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 197 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 226
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 188 (71.2 bits), Expect = 5.5e-13, P = 5.5e-13
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 153 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 211
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 212 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 270
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 271 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 323
Score = 133 (51.9 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 45/151 (29%), Positives = 77/151 (50%)
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 102 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 155
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 156 KEFT-----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 209
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 210 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 239
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 188 (71.2 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 52/169 (30%), Positives = 90/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 355
Score = 166 (63.5 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E L+
Sbjct: 159 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDESLK 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G++ + FGF+S+ + + A+ +NG + G+ I V
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKS-KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 188 (71.2 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 179 (68.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 62/211 (29%), Positives = 104/211 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 242 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 188 (71.2 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 179 (68.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 62/211 (29%), Positives = 104/211 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 242 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 188 (71.2 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 179 (68.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 62/211 (29%), Positives = 104/211 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 242 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 188 (71.2 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 179 (68.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 62/211 (29%), Positives = 104/211 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 242 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 188 (71.2 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 179 (68.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 62/211 (29%), Positives = 104/211 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 242 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 188 (71.2 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 52/169 (30%), Positives = 90/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 355
Score = 166 (63.5 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E L+
Sbjct: 159 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDESLK 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G++ + FGF+S+ + + A+ +NG + G+ I V
Sbjct: 209 ELFSQFGKTLSVKVMRDPNGKS-KGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 188 (71.2 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 52/169 (30%), Positives = 91/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 355
Score = 168 (64.2 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 52/184 (28%), Positives = 92/184 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E+L+
Sbjct: 159 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDENLK 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G++ + FGF+S+ + + A+ +NG + G+ I V
Sbjct: 209 ELFSQFGKTLSVKVMRDPSGKS-KGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 188 (71.2 bits), Expect = 6.2e-13, P = 6.2e-13
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 179 (68.1 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 62/211 (29%), Positives = 104/211 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 242 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 32/83 (38%), Positives = 51/83 (61%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERD 258
E ++ +VG L+WA EDL+ F +FG V+ +++++DR+ +R FGF++F + A RD
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRD 62
Query: 259 AALSLNGTDFRGRTIIVREGVDR 281
A +NG + GR I V E R
Sbjct: 63 AIEEMNGKELDGRVITVNEAQSR 85
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 186 (70.5 bits), Expect = 8.0e-13, P = 8.0e-13
Identities = 56/194 (28%), Positives = 96/194 (49%)
Query: 83 EVDDDSSVEEPRSRA--RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
E ++++ ++ ++ +P L+V NL + D + L E FK GTV S V + E+G S
Sbjct: 220 EEEEEAPAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRS 279
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+G GY+ + A+ A G+ + GRE++V FS T + +A + KK
Sbjct: 280 KGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVDFST--GKATNSNDAAGARAKKYGDTV 337
Query: 201 SPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
SP L+VGNL + + + F V S R+ +++ + FG+++F+S +
Sbjct: 338 SPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAK 397
Query: 259 AALS-LNGTDFRGR 271
+A LNG GR
Sbjct: 398 SAFEQLNGQSINGR 411
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 187 (70.9 bits), Expect = 8.9e-13, P = 8.9e-13
Identities = 52/169 (30%), Positives = 89/169 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D + L E+F FG LSV+V + TG S+G G++ A+ A+ +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ GR + R + ++ S R E + +++ Y+ + LYV NL + E
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQM--KQERVSRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 309 RLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 161 (61.7 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 53/183 (28%), Positives = 86/183 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A AI +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCD-ENG-SRGHGFVHFETQEAATRAIQTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA F +Y+ N + LR
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-KEREAEFGARAMEFT-----NVYIKNFGDDMDDNRLRE 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F RFG +S +V+ D G++ + FGF++F E A++ +NG + GR + V
Sbjct: 210 IFSRFGKTLSVKVMMDHTGRS-KGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RLE 271
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 183 (69.5 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 57/194 (29%), Positives = 97/194 (50%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E+ R R ++V L EL+ F+ G V ++ ++ +G S+G GY+
Sbjct: 168 EDERDRRT---IFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKD 224
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESP-HKLYVG 208
+S AI L G + G + + + + N + RN+EA S K + +P H+LYVG
Sbjct: 225 ESSVAPAI-QLTGQKLLGIPIIAQLTEAEKNRQARNSEA--SSGNK---HSAPFHRLYVG 278
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTD 267
N+ +++ DL++ F FG + ++ D G++ R +GF+ F + R+A +NG D
Sbjct: 279 NIHFSIDENDLQSVFEPFGELEFVQLQKDETGRS-RGYGFVQFRDPNQAREALEKMNGYD 337
Query: 268 FRGRTIIVREGVDR 281
GR I V G D+
Sbjct: 338 LGGRAIRVGLGNDK 351
Score = 37 (18.1 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 76 KDNVGGNEVDDDSSVEEPRS 95
+D +VD D + PRS
Sbjct: 51 RDRRRSKDVDGDDDMRSPRS 70
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 186 (70.5 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 53/175 (30%), Positives = 91/175 (52%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R++ P +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 186 RAKEFP-NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 174 (66.3 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 61/210 (29%), Positives = 103/210 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R ++V NL +S + L + FG +LS V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK 195
E G S+G G++ + +A+ AI ++G + GR++ F SR + EA + K
Sbjct: 134 ENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV---FVGQFKSR-KEREAELGARAK 188
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--S 253
F P+ +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 189 EF----PN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHE 242
Query: 254 DAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 243 DAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 186 (70.5 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 54/169 (31%), Positives = 91/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG SRG G+++ A A+ +
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G+++ G+ + V R M + R E L ++I Y+ + LY+ NL + E
Sbjct: 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 309
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + +G++ + FGF+ FSS E A++ +NG
Sbjct: 310 KLRKEFSPFGSITSAKVMLE-EGRS-KGFGFVCFSSPEEATKAVTEMNG 356
Score = 165 (63.1 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 57/210 (27%), Positives = 102/210 (48%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D V G + S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 76 DVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 134
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G ++ + ++A AI ++G + R++ V RF SR + EA +
Sbjct: 135 ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFK----SR-KEREAEMGAKA 188
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K F +Y+ N + + L+ F ++G +S +V+ D G++ R FGF+S+
Sbjct: 189 KEFT-----NVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKS-RGFGFVSYEKH 242
Query: 255 AERDAALS-LNGTDFRGRTIIVREGVDRTE 283
+ + A+ +NGT+ G+T+ V + E
Sbjct: 243 EDANKAVEEMNGTELNGKTVFVGRAQKKME 272
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 182 (69.1 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 52/177 (29%), Positives = 91/177 (51%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + E LRN F FG++ +V+ + +GQ+ + FG I FSS + A++ +NG
Sbjct: 300 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQS-KGFGLICFSSPEDATKAMTEMNG 354
Score = 171 (65.3 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 55/184 (29%), Positives = 95/184 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L E F FG +LS +V + + G S+G ++ + ++A AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEM 157
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + G ++ V RF N + R AE L S + F +Y+ N + E L+
Sbjct: 158 NGKLLKGCKVFVGRFK---NRKDREAE-LRSKASE-FT-----NVYIKNFGGDMDDERLK 207
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
+ F ++G +S +V+ D G++ + FGF+SF S +A + A +NG D G+ I V
Sbjct: 208 DVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ 266
Query: 280 DRTE 283
+ E
Sbjct: 267 KKVE 270
Score = 121 (47.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 47/183 (25%), Positives = 82/183 (44%)
Query: 95 SRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
++ R LYV +L D++E L F G VLS+ + R+ T S G Y+ +
Sbjct: 5 AKYRMASLYVGDLHA--DVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLA 62
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ A+ ++ + G+ +R+ +S R+A S +F+ NL
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDK 107
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT 272
++ + L HF FG ++S++V+ D +G F S A+R A +NG +G
Sbjct: 108 SIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADR-AIEEMNGKLLKGCK 166
Query: 273 IIV 275
+ V
Sbjct: 167 VFV 169
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 182 (69.1 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 52/177 (29%), Positives = 91/177 (51%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 239 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDS 297
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + E LRN F FG++ +V+ + +GQ+ + FG I FSS + A++ +NG
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQS-KGFGLICFSSPEDATKAMTEMNG 412
Score = 171 (65.3 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 55/184 (29%), Positives = 95/184 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L E F FG +LS +V + + G S+G ++ + ++A AI +
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQ-G-SKGYAFVHFQNQSAADRAIEEM 215
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + G ++ V RF N + R AE L S + F +Y+ N + E L+
Sbjct: 216 NGKLLKGCKVFVGRFK---NRKDREAE-LRSKASE-FT-----NVYIKNFGGDMDDERLK 265
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
+ F ++G +S +V+ D G++ + FGF+SF S +A + A +NG D G+ I V
Sbjct: 266 DVFSKYGKTLSVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ 324
Query: 280 DRTE 283
+ E
Sbjct: 325 KKVE 328
Score = 121 (47.7 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 47/183 (25%), Positives = 82/183 (44%)
Query: 95 SRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
++ R LYV +L D++E L F G VLS+ + R+ T S G Y+ +
Sbjct: 63 AKYRMASLYVGDLHA--DVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLA 120
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ A+ ++ + G+ +R+ +S R+A S +F+ NL
Sbjct: 121 DAQKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDK 165
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT 272
++ + L HF FG ++S++V+ D +G F S A+R A +NG +G
Sbjct: 166 SIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADR-AIEEMNGKLLKGCK 224
Query: 273 IIV 275
+ V
Sbjct: 225 VFV 227
>POMBASE|SPBC4F6.14 [details] [associations]
symbol:SPBC4F6.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISS;IDA] [GO:0006364
"rRNA processing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4F6.14 GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724
HSSP:P52298 HOGENOM:HOG000187841 KO:K14573 OrthoDB:EOG4K6KCP
PIR:T40511 RefSeq:NP_596114.1 ProteinModelPortal:O74400
STRING:O74400 EnsemblFungi:SPBC4F6.14.1 GeneID:2540871
KEGG:spo:SPBC4F6.14 OMA:MHALECL NextBio:20801987 Uniprot:O74400
Length = 674
Score = 184 (69.8 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 54/182 (29%), Positives = 82/182 (45%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +L F G + V NPETG +RG G++T + A+ A L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK-PEDLR 220
+ GR +R+ F+ R+ KK ++ +L + NL W++K P+ L
Sbjct: 67 KNKKLHGRILRLDFATP-RKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLE 125
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
HF +FG V ++ G+ F F+ A +A SLNGT+ GR I V V
Sbjct: 126 PHFSKFGKVREIKIPTKGGGRMCG-FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAV 184
Query: 280 DR 281
+
Sbjct: 185 SK 186
Score = 104 (41.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 40/138 (28%), Positives = 67/138 (48%)
Query: 82 NEVDDDSS--VEEP-RSRARPCELYVCNLPRSFDISELLEM-FKPFGTVLSVEVSRNPET 137
+EVD D + V++ R RP L + NLP S + LE F FG V +++ P
Sbjct: 87 SEVDTDQNKAVKKTIRQDNRP-RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKI---PTK 142
Query: 138 GISRGCGY--LTMGSINSAKNAIIALDGSDVGGREMRVRFSI--DMNSRTRNAEALISPP 193
G R CG+ + M +A+ A+ +L+G+++ GR + V +++ D T +A
Sbjct: 143 GGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEE 202
Query: 194 KKIFVYESPHKLYVGNLS 211
K FV + H + + S
Sbjct: 203 NKEFVSDEGHSIVTEDAS 220
Score = 71 (30.1 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/90 (26%), Positives = 44/90 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
++V NL + ++L NHF +FG + A+++ D + GFI F + + L +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMA 338
Query: 265 G-------TDFRGR---TIIVREGVDRTES 284
T+ R +++V EG+D T+S
Sbjct: 339 SQLPTQEPTEAEKRFLPSVLVDEGID-TDS 367
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 128 (50.1 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +P+S + EL +F+PFG +++ + + TG+S+G G++ + A AI L
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+GS G ++ N + N + L+S
Sbjct: 190 NGSIPSGCSEQITVKFANNPASNNPKGLLS 219
Score = 102 (41.0 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSL 263
L+V NLS L F +FG +V+ ++L D Q + + F+S S+ E +A LSL
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLT-QQCKGYAFVSMSNYTEAYNAMLSL 434
Query: 264 NGTDFRGRTIIV 275
NGT+ G+T+ V
Sbjct: 435 NGTNLAGKTLQV 446
Score = 87 (35.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LYV + ++ +L + F FG ++++R+L D ++ GF+ F E D A+ +L
Sbjct: 130 LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTL 189
Query: 264 NGT 266
NG+
Sbjct: 190 NGS 192
Score = 84 (34.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 22/100 (22%), Positives = 48/100 (48%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L + LP+ E+ +F G + S ++ R+ TG S G G++ A A+ +
Sbjct: 44 LIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSF 103
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISP-PKKIFVYE 200
+G + + ++V ++ N + + + +S PK + ++E
Sbjct: 104 NGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHE 143
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 163 (62.4 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAAL 261
++ +VG L WA + L+N F ++G V+ ++++ DR+ +R FGF++F+SD A R A
Sbjct: 6 YRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIE 65
Query: 262 SLNGTDFRGRTIIVREGVDR 281
++NG D GR I V E R
Sbjct: 66 AMNGQDLDGRNITVNEAQSR 85
Score = 106 (42.4 bits), Expect = 0.00026, P = 0.00026
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
+V L + D L F +G V+ ++ + ETG SRG G++T S + + AI A++
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMN 68
Query: 163 GSDVGGREMRV 173
G D+ GR + V
Sbjct: 69 GQDLDGRNITV 79
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 178 (67.7 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 50/165 (30%), Positives = 85/165 (51%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R++ P +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 186 RAKEFP-NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E
Sbjct: 303 DGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEE 345
Score = 174 (66.3 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 61/210 (29%), Positives = 103/210 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R ++V NL +S + L + FG +LS V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK 195
E G S+G G++ + +A+ AI ++G + GR++ F SR + EA + K
Sbjct: 134 ENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV---FVGQFKSR-KEREAELGARAK 188
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--S 253
F P+ +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 189 EF----PN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHE 242
Query: 254 DAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 243 DAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 111 (44.1 bits), Expect = 0.00082, P = 0.00082
Identities = 48/192 (25%), Positives = 78/192 (40%)
Query: 93 PRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
P + + P LYV +L + L E F P G +LS+ + R+ T S Y+
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A++A+ ++ + G+ +R+ +S R+ S IFV NL
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWS------QRDPSLRKSGVGNIFVK---------NLD 107
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271
++ + L + FG ++S V+ D G F AER A +NG GR
Sbjct: 108 KSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAER-AIKKMNGMLLNGR 166
Query: 272 TIIVREGVDRTE 283
+ V + R E
Sbjct: 167 KVFVGQFKSRKE 178
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 182 (69.1 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 63/211 (29%), Positives = 103/211 (48%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L+ FG++G +S +V+ D G++ R FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKS-RGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG D G+ I V + E
Sbjct: 242 EDAQK-AVDDMNGKDLNGKAIFVGRAQKKVE 271
Score = 176 (67.0 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 53/175 (30%), Positives = 88/175 (50%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L E F +G LSV+V + + G SRG G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G D+ G+ + V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FG++ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 182 (69.1 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 51/175 (29%), Positives = 89/175 (50%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D +L ++F +G +S+ V + E G SRG G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+ + V + R + K ++ Y+ + LYV NL
Sbjct: 244 AQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ D G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 118 (46.6 bits), Expect = 0.00033, P = 0.00033
Identities = 50/192 (26%), Positives = 79/192 (41%)
Query: 93 PRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
P + + P LYV +L + + L E F P G +LS+ V R+ T S G Y+
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A+ A+ ++ + GR +R+ +S R+ S IF+ NL
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWS------QRDPSLRKSGVGNIFIK---------NLD 107
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271
++ + L + F FG ++S +V+ D G F AER A +NG R
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAER-AIEKMNGMLLNDR 166
Query: 272 TIIVREGVDRTE 283
+ V R E
Sbjct: 167 KVFVGRFKSRKE 178
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 177 (67.4 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 55/183 (30%), Positives = 91/183 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V+ + E G SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETHEAAQQAINTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARALEFT-----NIYVKNLPVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G + R FGF++F E + A + +NG + GR +
Sbjct: 210 LFSQFGKMLSVKVMRDNSGHS-RCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
Score = 149 (57.5 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 42/141 (29%), Positives = 72/141 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ +
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQM--KQDRLRRYQGVN-LYVKNLDDSIDDD 308
Query: 218 DLRNHFGRFGTVVSARVLHDR 238
LR F +G + SA+ R
Sbjct: 309 KLRKEFSPYGVITSAKKRRQR 329
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 181 (68.8 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 52/180 (28%), Positives = 93/180 (51%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LY+ NL D+SE L E F FG ++S+ ++++ E + RG ++ + A+ A
Sbjct: 203 LYMKNLDA--DVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAE 259
Query: 160 ALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
++G+ G + + R + + R +K+ S +YV N++ AV
Sbjct: 260 TVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVS--NIYVKNVNVAVTE 317
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSLNGTDFRGRTIIV 275
E+LR HF + GT+ S +++ D KG++ + FGF+ FS+ E DA + +G F G+ + V
Sbjct: 318 EELRKHFSQCGTITSTKLMCDEKGKS-KGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYV 376
Score = 178 (67.7 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 63/199 (31%), Positives = 99/199 (49%)
Query: 89 SVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SV P +R ++V NLP S + L +MFK FG ++S +V+ E G SRG G++
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQ 158
Query: 148 MGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
++A AI L+ + V +E+ V +F M R + P +K Y + LY
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKF---MKKTDR-----VKPEEK---YTN---LY 204
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLN 264
+ NL V + LR F FG +VS + D + + R + F++F + DA R AA ++N
Sbjct: 205 MKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR-AAETVN 262
Query: 265 GTDFRGRTIIVREGVDRTE 283
GT F + + V + E
Sbjct: 263 GTKFGSKCLYVGRAQKKAE 281
Score = 124 (48.7 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 53/183 (28%), Positives = 83/183 (45%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S L + F F ++ SV + ++ +G S GY S A AI
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ +RV +S+ RN +FV P V N AV L++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVG------NVFVKNLPES--VTN---AV----LQD 130
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG +VS +V G++ R +GF+ F DA A +LN T + I V + +
Sbjct: 131 MFKKFGNIVSCKVATLEDGKS-RGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMK 189
Query: 281 RTE 283
+T+
Sbjct: 190 KTD 192
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 161 (61.7 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 35/75 (46%), Positives = 47/75 (62%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
KLYVGNL++ V DL F +GTV SA+V+ DR +R FGF+ SD E AA++
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 263 LNGTDFRGRTIIVRE 277
LNG + GR ++V E
Sbjct: 64 LNGKEMDGRNLMVNE 78
Score = 122 (48.0 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL ++L F +GTV S +V + TG SRG G++ MGS A+ AI
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 161 LDGSDVGGREMRV 173
L+G ++ GR + V
Sbjct: 64 LNGKEMDGRNLMV 76
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 181 (68.8 bits), Expect = 8.4e-12, P = 8.4e-12
Identities = 50/194 (25%), Positives = 96/194 (49%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ ++ ++F PFG + S+ + ++ + G S+G G
Sbjct: 220 DRESKFEE--MKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GKSKGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ SA A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 277 FVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL + E L F FGT+ SA+V+ D G++ + FGF+ F++ E A++
Sbjct: 337 N-LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKS-KGFGFVCFTTPEEATKAIT 394
Query: 263 -LNGTDFRGRTIIV 275
+N G+ + V
Sbjct: 395 EMNTRMINGKPLYV 408
Score = 152 (58.6 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 52/202 (25%), Positives = 91/202 (45%)
Query: 87 DSSVEEPRSRARPCE----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
D S EE + E LYV L S + + L E+F P G V S+ V R+ + S G
Sbjct: 35 DQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLG 94
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
Y+ + AI L+ + + GR R+ +S S R+ +
Sbjct: 95 YAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDG-------------- 140
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
+++ NL A+ + L + F FG ++S +V D GQ+ + FGF+ + + +AA+
Sbjct: 141 -NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQS-KCFGFVHYETAEAAEAAIE 198
Query: 262 SLNGTDFRGRTIIVREGVDRTE 283
++NG R + V + + + +
Sbjct: 199 NVNGMLLNDREVFVGKHISKKD 220
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 50/197 (25%), Positives = 88/197 (44%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P +R + +++ NL + D L + F FG +LS +V+ + E G S+ G++
Sbjct: 128 SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVH 186
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ +A+ AI ++G + RE+ V I R E + K F +YV
Sbjct: 187 YETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEM----KANFT-----NIYV 237
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
N+ E F FG + S + D+ G++ + FGF++F ++ A LN
Sbjct: 238 KNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKS-KGFGFVNFEDHESAVKAVEELNDK 296
Query: 267 DFRGRTIIVREGVDRTE 283
+ G+ I V + E
Sbjct: 297 EINGQKIYVGRAQKKRE 313
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 181 (68.8 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 54/175 (30%), Positives = 89/175 (50%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N + L EMF +G LSV+V + + G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G D+ G+ M V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 303 DGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 178 (67.7 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 61/211 (28%), Positives = 104/211 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L+ FG++G +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKS-KGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG D G+++ V + E
Sbjct: 242 EDAQK-AVDEMNGKDMNGKSMFVGRAQKKVE 271
Score = 116 (45.9 bits), Expect = 0.00055, P = 0.00055
Identities = 50/192 (26%), Positives = 79/192 (41%)
Query: 93 PRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
P + + P LYV +L + + L E F P G +LS+ V R+ T S G Y+
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A+ A+ ++ + GR +R+ +S R+ S IF+ NL
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWS------QRDPSLRKSGVGNIFIK---------NLD 107
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271
++ + L + F FG ++S +V+ D G F AER A +NG R
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAER-AIDKMNGMLLNDR 166
Query: 272 TIIVREGVDRTE 283
+ V R E
Sbjct: 167 KVFVGRFKSRKE 178
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 181 (68.8 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 51/178 (28%), Positives = 92/178 (51%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E +RA+ +Y+ N D +L E+F +G LS+ V + ++G S+G G+++
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFER 240
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVG 208
A+ A+ ++G ++ G+++ V + R + K ++ Y+ + LYV
Sbjct: 241 HEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVN-LYVK 299
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
NL + E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 300 NLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 114 (45.2 bits), Expect = 0.00093, P = 0.00093
Identities = 50/192 (26%), Positives = 78/192 (40%)
Query: 93 PRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
P + + P LYV +L + L E F P G +LS+ V R+ T S G Y+
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQP 62
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A+ A+ ++ + GR +R+ +S R+ S IF+ NL
Sbjct: 63 ADAERALDTMNFDVIKGRPVRIMWS------QRDPSLRKSGVGNIFIK---------NLD 107
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271
++ + L + F FG ++S +V+ D G F AER A +NG R
Sbjct: 108 KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAER-AIEKMNGMLLNDR 166
Query: 272 TIIVREGVDRTE 283
+ V R E
Sbjct: 167 KVFVGRFKSRKE 178
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 180 (68.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 51/169 (30%), Positives = 90/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 181 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 237
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 238 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 284
Score = 172 (65.6 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 53/184 (28%), Positives = 93/184 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 87
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E+LR
Sbjct: 88 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDENLR 137
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G++ + FGF+S+ + + A+ +NG + G++I V
Sbjct: 138 ELFSQFGKTLSVKVMRDCSGKS-KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ 196
Query: 280 DRTE 283
+ E
Sbjct: 197 KKVE 200
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 180 (68.4 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 51/169 (30%), Positives = 90/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 355
Score = 172 (65.6 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 53/184 (28%), Positives = 93/184 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E+LR
Sbjct: 159 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDENLR 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G++ + FGF+S+ + + A+ +NG + G++I V
Sbjct: 209 ELFSQFGKTLSVKVMRDCSGKS-KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 141 (54.7 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 36/124 (29%), Positives = 62/124 (50%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F FG +++ + + TG+SRG G++
Sbjct: 142 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIR 201
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 202 FDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQALLS-----HLYQSPNRRYP 256
Query: 208 GNLS 211
G L+
Sbjct: 257 GPLA 260
Score = 121 (47.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D + L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 367 NGYRLGDRVLQVSF 380
Score = 98 (39.6 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 34/130 (26%), Positives = 59/130 (45%)
Query: 80 GGNEVDDD--SSVEEPR-SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE 136
G N V + S VE P S L V LP++ EL +F G + S ++ R+
Sbjct: 45 GPNSVSNTCTSPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKI 104
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI 196
TG S G G++ A+ AI L+G + + ++V ++ ++ R+A +S K
Sbjct: 105 TGQSLGYGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKT 164
Query: 197 FVYESPHKLY 206
+ +L+
Sbjct: 165 MTQKELEQLF 174
Score = 79 (32.9 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 367 NGYRLGDRVLQVSFKTNKT 385
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 180 (68.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 51/169 (30%), Positives = 90/169 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRT-RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FG++ SA+V+ + G++ + FGF+ FSS E A++ +NG
Sbjct: 309 KLRKEFSPFGSITSAKVMLE-DGRS-KGFGFVCFSSPEEATKAVTEMNG 355
Score = 172 (65.6 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 53/184 (28%), Positives = 93/184 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAANKAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E+LR
Sbjct: 159 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDENLR 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G++ + FGF+S+ + + A+ +NG + G++I V
Sbjct: 209 ELFSQFGKTLSVKVMRDCSGKS-KGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 179 (68.1 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 62/211 (29%), Positives = 104/211 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL +S D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPK 194
E G S+G G++ + +A+ AI ++G + R++ V RF SR + EA +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK----SR-KEREAELGARA 187
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-- 252
K F +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 188 KEFT-----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERH 241
Query: 253 SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
DA++ A +NG + G+ I V + E
Sbjct: 242 EDAQK-AVDEMNGKELNGKQIYVGRAQKKVE 271
Score = 173 (66.0 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 48/161 (29%), Positives = 83/161 (51%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F FG LSV+V + E+G S+G G+++
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
+ E LR F FGT+ SA+V+ + G ++ FGF+ FS
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFS 341
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 178 (67.7 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 58/179 (32%), Positives = 94/179 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + L +F +GTV SV V R+ G SRG G++ + +AK A+ +L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESL 262
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK---LYVGNLSWAVKPED 218
G +G +++ V ++ + R + S F+ + + LYV NLS ++
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDN---FIAKPNMRWSNLYVKNLSESMNETR 319
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVR 276
LR FG +G +VSA+V+ G++ + FGF+ FS+ E + A LNG G+ I+VR
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRS-KGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVR 377
Score = 176 (67.0 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 61/191 (31%), Positives = 92/191 (48%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R+R LYV NL S S L MF PFG++LS +V E G S+G G++ + S
Sbjct: 106 RTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVE--ENGQSKGFGFVQFDTEQS 163
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A +A AL GS V G+++ V I+ + R A + +YV NL
Sbjct: 164 AVSARSALHGSMVYGKKLFVAKFINKDERAAMAGN-----------QDSTNVYVKNLIET 212
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRT 272
V + L F ++GTV S V+ D G++ R FGF++F + A+ SL G +
Sbjct: 213 VTDDCLHTLFSQYGTVSSVVVMRDGMGRS-RGFGFVNFCNPENAKKAMESLCGLQLGSKK 271
Query: 273 IIVREGVDRTE 283
+ V + + + E
Sbjct: 272 LFVGKALKKDE 282
Score = 160 (61.4 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 54/184 (29%), Positives = 91/184 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L +L++ F V+SV + RN TG S Y+ S SA NA+ L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ SD+ G+ MR+ +S D+ R R + LYV NL ++ L
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFAN-------------LYVKNLDSSITSSCLE 129
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F FG+++S +V+ + GQ+ + FGF+ F ++ +A S L+G+ G+ + V + +
Sbjct: 130 RMFCPFGSILSCKVVEEN-GQS-KGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFI 187
Query: 280 DRTE 283
++ E
Sbjct: 188 NKDE 191
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 172 (65.6 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 52/175 (29%), Positives = 90/175 (51%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RA+ +Y+ N D L ++F P LSV+V + E+G S+G G+++
Sbjct: 57 ARAKEFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTD-ESGKSKGFGFVSFERHED 112
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+++ V + R + K +I Y+ + LYV NL
Sbjct: 113 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLD 171
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 172 DGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 224
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 178 (67.7 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 49/175 (28%), Positives = 91/175 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G+S+G G++ + +A NAI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V+ E+ R
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F +FG + SA + D +G++ R FGF++FS+ AA+ +N + R + + V
Sbjct: 242 LFEKFGEITSATLSRDSEGKS-RGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYV 295
Score = 154 (59.3 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 47/170 (27%), Positives = 83/170 (48%)
Query: 73 INGKDNVGGNEV---DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+N K G+ + D S EE +A +Y+ N+ + E ++F+ FG + S
Sbjct: 195 LNDKKVFVGHHISKKDRQSKFEE--MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSA 252
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
+SR+ E G SRG G++ + SA+ A+ ++ +V +++ V + + R
Sbjct: 253 TLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQ 311
Query: 190 ISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ K Y+ + LYV NL+ V + LR FG +GT+ SA+V+ D
Sbjct: 312 YEAARMEKASKYQGVN-LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 139 (54.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 53/214 (24%), Positives = 97/214 (45%)
Query: 74 NGK-DNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVE 130
NG DN EV ++VE P + ++P LYV L S + L E+F G V S+
Sbjct: 16 NGTPDNAPAPEV---TAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIR 72
Query: 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 190
V R+ T S G Y+ + A+ L+ + + G+ R+ +S + AL
Sbjct: 73 VCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWS-------QRDPAL- 124
Query: 191 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
+K +++ NL A+ + L + F FG ++S +V D G ++ +GF+
Sbjct: 125 ---RKT----GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVH 176
Query: 251 F-SSDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
+ +++A +A +NG + + V + + +
Sbjct: 177 YETAEAANNAIKHVNGMLLNDKKVFVGHHISKKD 210
Score = 44 (20.5 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 246 FGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
FGF+ FSS E A++ +N G+ + V
Sbjct: 419 FGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 449
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 156 (60.0 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
KL++G L+W + LR F R+GT+ A V+ DR +R FGF+ F+S+ E DAA+ +
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 263 LNGTDFRGRTIIVREGVDR 281
+N +F GR I V + +R
Sbjct: 63 MNNQEFDGRIIRVDKASER 81
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 155 (59.6 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 46/165 (27%), Positives = 75/165 (45%)
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F+ FGT+ V NP+T SR G++T ++ A +A +A V G + ++ ++
Sbjct: 27 FEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAMAASPHAVDGNTVELKRAVSR 85
Query: 180 NSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR 238
R A A + KL+VG L V DL HF +FG V A ++ D+
Sbjct: 86 EDSARPGAHAKVK------------KLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADK 133
Query: 239 KGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
+ R FGF+ F S D A + +G + V++ V + +
Sbjct: 134 QSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKAVPKED 178
Score = 109 (43.4 bits), Expect = 0.00032, P = 0.00032
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+G + LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++ +
Sbjct: 11 IGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPH 70
Query: 267 DFRGRTIIVREGVDRTES 284
G T+ ++ V R +S
Sbjct: 71 AVDGNTVELKRAVSREDS 88
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 170 (64.9 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 49/186 (26%), Positives = 93/186 (50%)
Query: 90 VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
VEE S+ R L N+P + ++ +F+ +G+V+ +E+S + + +RG ++ M
Sbjct: 87 VEEEISKTR---LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKER-NRGLVFIEMA 142
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
S A A+ +L+ + GR ++V ++ ++ + A P + + L+V N
Sbjct: 143 SPEEAATALKSLESCEYEGRRLKVDYA---KTKKKKTYAPRETPSPVPTFN----LFVAN 195
Query: 210 LSWAVKPEDLRNHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD 267
L++ + + L+ F G VVS V+ + + +GF+SF + + +AAL G D
Sbjct: 196 LAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKD 255
Query: 268 FRGRTI 273
F GR I
Sbjct: 256 FLGRPI 261
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 140 (54.3 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 118 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 177
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 178 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 232
Query: 208 GNL 210
G L
Sbjct: 233 GPL 235
Score = 120 (47.3 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 330 NGYRLGDRVLQVSF 343
Score = 83 (34.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 46 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 105
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 106 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 150
Score = 73 (30.8 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 330 NGYRLGDRVLQV 341
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 139 (54.0 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 35/123 (28%), Positives = 60/123 (48%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 125 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 184
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + ++AL+S +Y+SP++ Y
Sbjct: 185 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQALLSQ-----LYQSPNRRYP 239
Query: 208 GNL 210
G L
Sbjct: 240 GPL 242
Score = 121 (47.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 162 DGSDVGGREMRVRFSIDMNSRT 183
+G +G R ++V F + ++
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHKS 371
Score = 83 (34.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 113 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 157
Score = 75 (31.5 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 350 NGYRLGDRVLQVSFKTNKT 368
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 140 (54.3 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 120 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 180 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 234
Query: 208 GNL 210
G L
Sbjct: 235 GPL 237
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 345 NGYRLGDRVLQVSF 358
Score = 83 (34.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 152
Score = 73 (30.8 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 345 NGYRLGDRVLQV 356
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 140 (54.3 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 120 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 180 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 234
Query: 208 GNL 210
G L
Sbjct: 235 GPL 237
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 345 NGYRLGDRVLQVSF 358
Score = 83 (34.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 152
Score = 73 (30.8 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 345 NGYRLGDRVLQV 356
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 175 (66.7 bits), Expect = 5.7e-11, P = 5.7e-11
Identities = 55/184 (29%), Positives = 94/184 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG ++S +V+ + +G S+G G++ + SA+ AI L
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A K F +YV NL+ + +DL+N
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTAN------KTKFT-----NVYVKNLAESTTDDDLKN 233
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIVREGV 279
FG +G + SA V+ D +G++ + FGF++F + DA R A SLNG F + V
Sbjct: 234 AFGEYGKITSAVVMKDGEGKS-KGFGFVNFENADDAAR-AVESLNGHKFDDKEWYVGRAQ 291
Query: 280 DRTE 283
++E
Sbjct: 292 KKSE 295
Score = 163 (62.4 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 52/180 (28%), Positives = 89/180 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L F +G + S V ++ E G S+G G++ + + A A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + + R R + L K ++S + LYV NL ++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADK---FQSSN-LYVKNLDPSISD 331
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
E L+ F FGTV S++V+ D G T++ GF++F++ E A+S L+G + + V
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPNG-TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 141 (54.7 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 49/183 (26%), Positives = 86/183 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L + F GTV++V V R+ T S G GY+ + A AI L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +RV +S + R + A +++ NL ++ + L +
Sbjct: 98 NYIPLYGKPIRVMYS-HRDPSVRRSGA--------------GNIFIKNLDESIDHKALHD 142
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG +VS +V D GQ+ + +GF+ ++++ A+ LNG + + V +
Sbjct: 143 TFSSFGNIVSCKVAVDSSGQS-KGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR 201
Query: 281 RTE 283
R E
Sbjct: 202 RQE 204
Score = 125 (49.1 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 32/115 (27%), Positives = 55/115 (47%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F PFGTV S +V R+P G S+G G++
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 363
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ L G + + + V + R +A S + + + S
Sbjct: 364 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPS 418
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 140 (54.3 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 125 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 184
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 185 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 239
Query: 208 GNL 210
G L
Sbjct: 240 GPL 242
Score = 120 (47.3 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 350 NGYRLGDRVLQVSF 363
Score = 83 (34.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 113 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 157
Score = 73 (30.8 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 350 NGYRLGDRVLQV 361
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 140 (54.3 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 173 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 227
Query: 208 GNL 210
G L
Sbjct: 228 GPL 230
Score = 120 (47.3 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 352 NGYRLGDRVLQVSF 365
Score = 83 (34.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
Score = 73 (30.8 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 352 NGYRLGDRVLQV 363
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 140 (54.3 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 173 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 227
Query: 208 GNL 210
G L
Sbjct: 228 GPL 230
Score = 120 (47.3 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 352 NGYRLGDRVLQVSF 365
Score = 83 (34.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 101 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 145
Score = 73 (30.8 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 352 NGYRLGDRVLQV 363
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 140 (54.3 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 120 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 180 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 234
Query: 208 GNL 210
G L
Sbjct: 235 GPL 237
Score = 120 (47.3 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 359 NGYRLGDRVLQVSF 372
Score = 83 (34.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 152
Score = 73 (30.8 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 359 NGYRLGDRVLQV 370
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 140 (54.3 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 120 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 179
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 180 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 234
Query: 208 GNL 210
G L
Sbjct: 235 GPL 237
Score = 120 (47.3 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 359 NGYRLGDRVLQVSF 372
Score = 83 (34.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 108 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 152
Score = 73 (30.8 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 359 NGYRLGDRVLQV 370
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 140 (54.3 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 136 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 195
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 196 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 250
Query: 208 GNL 210
G L
Sbjct: 251 GPL 253
Score = 120 (47.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 361 NGYRLGDRVLQVSF 374
Score = 83 (34.3 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 64 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 123
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 124 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 168
Score = 73 (30.8 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 361 NGYRLGDRVLQV 372
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 140 (54.3 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 124 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 183
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 184 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 238
Query: 208 GNL 210
G L
Sbjct: 239 GPL 241
Score = 120 (47.3 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 363 NGYRLGDRVLQVSF 376
Score = 83 (34.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 52 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 111
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 112 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 156
Score = 73 (30.8 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 363 NGYRLGDRVLQV 374
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 140 (54.3 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 125 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 184
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 185 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 239
Query: 208 GNL 210
G L
Sbjct: 240 GPL 242
Score = 120 (47.3 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 364 NGYRLGDRVLQVSF 377
Score = 83 (34.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 113 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 157
Score = 73 (30.8 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 364 NGYRLGDRVLQV 375
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 140 (54.3 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 35/123 (28%), Positives = 61/123 (49%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 125 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 184
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N ++++AL+S +Y+SP++ Y
Sbjct: 185 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ-----LYQSPNRRYP 239
Query: 208 GNL 210
G L
Sbjct: 240 GPL 242
Score = 120 (47.3 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 364 NGYRLGDRVLQVSF 377
Score = 83 (34.3 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 113 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 157
Score = 73 (30.8 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 364 NGYRLGDRVLQV 375
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 153 (58.9 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
KL++G LSW LR+ F FG VV A+V+ DR+ +R FGF++F+ + AA+S
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 263 LNGTDFRGRTIIVREGVDR 281
++G + GR I V DR
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 114 (45.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R +L++ L D + L + F FG V+ +V + ETG SRG G++ +A
Sbjct: 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTR 184
AI +DG ++ GR +RV + D S R
Sbjct: 91 AAISEMDGKELNGRHIRVNPANDRPSAPR 119
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 134 (52.2 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TGISRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + +A++S +Y+SP++ Y
Sbjct: 173 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ-----LYQSPNRRYP 227
Query: 208 GNLS 211
G L+
Sbjct: 228 GPLA 231
Score = 124 (48.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 325 NGYRLGDRVLQVSF 338
Score = 94 (38.1 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 32/133 (24%), Positives = 58/133 (43%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
NG V N S V+ + L V LP++ EL +F G + S ++ R
Sbjct: 16 NGPTTVNNN---CSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR 72
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ TG S G G++ A+ AI L+G + + ++V ++ ++ R+A +S
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 132
Query: 194 KKIFVYESPHKLY 206
K + +L+
Sbjct: 133 PKTMTQKELEQLF 145
Score = 78 (32.5 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 325 NGYRLGDRVLQVSFKTNKT 343
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 176 (67.0 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 56/209 (26%), Positives = 94/209 (44%)
Query: 75 GKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVS 132
G DN +++ EE C L++ NL +FD +E L E+F GTV S +S
Sbjct: 705 GADNSSAKMEEEEEEEEEEEESLPGCTLFIKNL--NFDTTEEKLKEVFSKVGTVKSCSIS 762
Query: 133 RNP-ETGI--SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
+ + G+ S G G++ A+ A+ L G V G ++ VR S R
Sbjct: 763 KKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRIS----ERATKPAVT 818
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT-RVFGF 248
++ K++ ++ K+ V N+ + ++R F FG + + R+ G T R FGF
Sbjct: 819 LARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGF 878
Query: 249 ISF--SSDAERDAALSLNGTDFRGRTIIV 275
+ F DA+R + T GR +++
Sbjct: 879 VDFLTKQDAKRAFNALCHSTHLYGRRLVL 907
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 172 (65.6 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 48/186 (25%), Positives = 87/186 (46%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ + D L + F +G V+ + R+ TG +RG G++ ++ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 161 LDGSDVGGREMRVRFSI---DMNSRTRNAEA--LISPPKKIFVYESPHKLYVGNLSWAVK 215
+D + GR + + ++ D R+A L+SP K++VG L ++
Sbjct: 65 MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHG--GGGRTKKIFVGGLPSSIT 122
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
E+ +N+F +FGT+ V++D Q R FGFI+F SD D L + G+ + V
Sbjct: 123 EEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEV 182
Query: 276 REGVDR 281
+ V +
Sbjct: 183 KRAVPK 188
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 168 (64.2 bits), Expect = 8.9e-11, P = 8.9e-11
Identities = 51/185 (27%), Positives = 84/185 (45%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
L HF +FGTV A ++ D++ R FGF+ F + D A + +G + V++
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 279 VDRTE 283
V + +
Sbjct: 174 VPKED 178
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G T+ ++ V R +S
Sbjct: 68 SPHAVDGNTVELKRAVSREDS 88
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 134 (52.2 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TGISRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + +A++S +Y+SP++ Y
Sbjct: 173 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ-----LYQSPNRRYP 227
Query: 208 GNLS 211
G L+
Sbjct: 228 GPLA 231
Score = 124 (48.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 338 NGYRLGDRVLQVSF 351
Score = 93 (37.8 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 31/133 (23%), Positives = 58/133 (43%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
NG + N S V+ + L V LP++ EL +F G + S ++ R
Sbjct: 16 NGPTTINNN---CSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR 72
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ TG S G G++ A+ AI L+G + + ++V ++ ++ R+A +S
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 132
Query: 194 KKIFVYESPHKLY 206
K + +L+
Sbjct: 133 PKTMTQKELEQLF 145
Score = 78 (32.5 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 338 NGYRLGDRVLQVSFKTNKT 356
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 134 (52.2 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TGISRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + +A++S +Y+SP++ Y
Sbjct: 173 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ-----LYQSPNRRYP 227
Query: 208 GNLS 211
G L+
Sbjct: 228 GPLA 231
Score = 124 (48.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 338 NGYRLGDRVLQVSF 351
Score = 87 (35.7 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 31/133 (23%), Positives = 57/133 (42%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
NG V N S S+ + Y LP++ EL +F G + S ++ R
Sbjct: 16 NGPTTVNNNCSSPVDSGNTEDSKTNLIDNY---LPQNMTQEELKSLFGSIGEIESCKLVR 72
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ TG S G G++ A+ AI L+G + + ++V ++ ++ R+A +S
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 132
Query: 194 KKIFVYESPHKLY 206
K + +L+
Sbjct: 133 PKTMTQKELEQLF 145
Score = 78 (32.5 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 338 NGYRLGDRVLQVSFKTNKT 356
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 134 (52.2 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TGISRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + +A++S +Y+SP++ Y
Sbjct: 173 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ-----LYQSPNRRYP 227
Query: 208 GNLS 211
G L+
Sbjct: 228 GPLA 231
Score = 124 (48.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 338 NGYRLGDRVLQVSF 351
Score = 87 (35.7 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 31/133 (23%), Positives = 57/133 (42%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
NG V N S S+ + Y LP++ EL +F G + S ++ R
Sbjct: 16 NGPTTVNNNCSSPVDSGNTEDSKTNLIDNY---LPQNMTQEELKSLFGSIGEIESCKLVR 72
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ TG S G G++ A+ AI L+G + + ++V ++ ++ R+A +S
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 132
Query: 194 KKIFVYESPHKLY 206
K + +L+
Sbjct: 133 PKTMTQKELEQLF 145
Score = 78 (32.5 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 338 NGYRLGDRVLQVSFKTNKT 356
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 134 (52.2 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TGISRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + +A++S +Y+SP++ Y
Sbjct: 173 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ-----LYQSPNRRYP 227
Query: 208 GNLS 211
G L+
Sbjct: 228 GPLA 231
Score = 124 (48.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 339 NGYRLGDRVLQVSF 352
Score = 94 (38.1 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 32/133 (24%), Positives = 58/133 (43%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
NG V N S V+ + L V LP++ EL +F G + S ++ R
Sbjct: 16 NGPTTVNNN---CSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR 72
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ TG S G G++ A+ AI L+G + + ++V ++ ++ R+A +S
Sbjct: 73 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 132
Query: 194 KKIFVYESPHKLY 206
K + +L+
Sbjct: 133 PKTMTQKELEQLF 145
Score = 78 (32.5 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 339 NGYRLGDRVLQVSFKTNKT 357
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 173 (66.0 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 49/178 (27%), Positives = 89/178 (50%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + E+F FG ++S + ++ + G +G G++
Sbjct: 208 DSQLEE--TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFV 264
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
A A+ AL+ S++ G ++ V + N R + + K+ Y+ +
Sbjct: 265 NYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN- 323
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L+V NL +V E L F +GT+ SA+V+ G++ + FGF+ FS+ E A++
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS-KGFGFVCFSTPEEATKAIT 380
Score = 165 (63.1 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 51/197 (25%), Positives = 97/197 (49%)
Query: 89 SVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P R + +++ NL D L + F FG +LS +++ + E G S+G G++
Sbjct: 114 SQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVH 172
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+AK AI AL+G + G+E+ V + ++ + R+++ + K + LYV
Sbjct: 173 FEEEGAAKEAIDALNGMLLNGQEIYV--APHLSRKERDSQ--LEETKAHYT-----NLYV 223
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
N++ E + F +FG +VSA + D G+ + FGF+++ + A+ +LN +
Sbjct: 224 KNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALNDS 282
Query: 267 DFRGRTIIVREGVDRTE 283
+ G + V + E
Sbjct: 283 ELNGEKLYVGRAQKKNE 299
Score = 150 (57.9 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 51/183 (27%), Positives = 88/183 (48%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S + L ++F P G+V S+ V R+ T S G Y+ + + AI L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S R+ S KK +++ NL + + L +
Sbjct: 100 NYTPIKGRLCRIMWS------QRDP----SLRKK-----GSGNIFIKNLHPDIDNKALYD 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S+++ D G++ + FGF+ F + A ++A +LNG G+ I V +
Sbjct: 145 TFSVFGDILSSKIATDENGKS-KGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLS 203
Query: 281 RTE 283
R E
Sbjct: 204 RKE 206
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 168 (64.2 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 51/185 (27%), Positives = 84/185 (45%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 12 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 71 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 118
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
L HF +FGTV A ++ D++ R FGF+ F + D A + +G + V++
Sbjct: 119 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 178
Query: 279 VDRTE 283
V + +
Sbjct: 179 VPKED 183
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G T+ ++ V R +S
Sbjct: 73 SPHAVDGNTVELKRAVSREDS 93
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 168 (64.2 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 51/185 (27%), Positives = 84/185 (45%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
L HF +FGTV A ++ D++ R FGF+ F + D A + +G + V++
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 279 VDRTE 283
V + +
Sbjct: 174 VPKED 178
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G T+ ++ V R +S
Sbjct: 68 SPHAVDGNTVELKRAVSREDS 88
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 173 (66.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 56/183 (30%), Positives = 90/183 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG++LS +V N E G SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYN-EHG-SRGFGFVHFETHEAAQKAINTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + F +YV NL + + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSRQKR-EAELGARALGFT-----NIYVKNLRVDMDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F +FG S +V+ D GQ+ R FGFI+F E A+ +NG + G+ + V
Sbjct: 210 LFSQFGKTQSVKVMRDSNGQS-RGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RAE 271
Score = 160 (61.4 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 48/167 (28%), Positives = 82/167 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG SV+V R+ G SRG G++ A+ A+ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVGNLSWAVKPEDL 219
+G +V G+ + V + R + K+ Y+ + LYV NL ++ + L
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVN-LYVKNLDDSINDDRL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ F +G + SA+V+ + ++ FGF+ FSS E A++ +NG
Sbjct: 311 KEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNG 355
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 168 (64.2 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 51/185 (27%), Positives = 84/185 (45%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 12 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 71 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 118
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
L HF +FGTV A ++ D++ R FGF+ F + D A + +G + V++
Sbjct: 119 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 178
Query: 279 VDRTE 283
V + +
Sbjct: 179 VPKED 183
Score = 126 (49.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G T+ ++ V R +S
Sbjct: 73 SPHAVDGNTVELKRAVSREDS 93
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 171 (65.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 47/185 (25%), Positives = 86/185 (46%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII- 159
+L++ + D L E F +G ++ + R+ TG +RG G++ + A+ I+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 160 --ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKP 216
+DG V ++ R + R + LISP + K++VG L ++
Sbjct: 76 KHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITE 135
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+ +N+F +FGT+ V++D Q R FGFI+F S+ D L + G+ + V+
Sbjct: 136 AEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMVEVK 195
Query: 277 EGVDR 281
V +
Sbjct: 196 RAVPK 200
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 134 (52.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TGISRG G++
Sbjct: 141 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 200
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + +A++S +Y+SP++ Y
Sbjct: 201 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ-----LYQSPNRRYP 255
Query: 208 GNLS 211
G L+
Sbjct: 256 GPLA 259
Score = 124 (48.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 366 NGYRLGDRVLQVSF 379
Score = 94 (38.1 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 34/163 (20%), Positives = 64/163 (39%)
Query: 44 SSCWSRSHPAGFRSVLXXXXXXXXXXXXXINGKDNVGGNEVDDDSSVEEPRSRARPCELY 103
S W+ G + + NG + N S V+ + L
Sbjct: 14 SGSWAAEPWTGVIAAMETQLSNGPTCNNTANGPTTINNN---CSSPVDSGNTEDSKTNLI 70
Query: 104 VCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG 163
V LP++ EL +F G + S ++ R+ TG S G G++ A+ AI L+G
Sbjct: 71 VNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 130
Query: 164 SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+ + ++V ++ ++ R+A +S K + +L+
Sbjct: 131 LRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 173
Score = 78 (32.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 366 NGYRLGDRVLQVSFKTNKT 384
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 134 (52.2 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TGISRG G++
Sbjct: 142 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 201
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + +A++S +Y+SP++ Y
Sbjct: 202 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ-----LYQSPNRRYP 256
Query: 208 GNLS 211
G L+
Sbjct: 257 GPLA 260
Score = 124 (48.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 367 NGYRLGDRVLQVSF 380
Score = 93 (37.8 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 31/133 (23%), Positives = 58/133 (43%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
NG + N S V+ + L V LP++ EL +F G + S ++ R
Sbjct: 45 NGPTTINNN---CSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR 101
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ TG S G G++ A+ AI L+G + + ++V ++ ++ R+A +S
Sbjct: 102 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 161
Query: 194 KKIFVYESPHKLY 206
K + +L+
Sbjct: 162 PKTMTQKELEQLF 174
Score = 78 (32.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 367 NGYRLGDRVLQVSFKTNKT 385
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 134 (52.2 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TGISRG G++
Sbjct: 153 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 212
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + +A++S +Y+SP++ Y
Sbjct: 213 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ-----LYQSPNRRYP 267
Query: 208 GNLS 211
G L+
Sbjct: 268 GPLA 271
Score = 124 (48.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 379 NGYRLGDRVLQVSF 392
Score = 78 (32.5 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 379 NGYRLGDRVLQVSFKTNKT 397
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 166 (63.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 51/185 (27%), Positives = 83/185 (44%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
L HF +FG V A ++ D++ R FGF+ F S D A + +G + V++
Sbjct: 114 LIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 279 VDRTE 283
V + +
Sbjct: 174 VPKED 178
Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G T+ ++ V R +S
Sbjct: 68 SPHAVDGNTVELKRAVSREDS 88
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 150 (57.9 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAAL 261
++ +VG L+WA L F ++G V+ +++++DR+ +R FGF++F + A +DA
Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
Query: 262 SLNGTDFRGRTIIVREGVDR 281
+NG D GR+I V E R
Sbjct: 68 GMNGQDLDGRSITVNEAQSR 87
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 134 (52.2 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 35/124 (28%), Positives = 60/124 (48%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TGISRG G++
Sbjct: 142 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR 201
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + +A++S +Y+SP++ Y
Sbjct: 202 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ-----LYQSPNRRYP 256
Query: 208 GNLS 211
G L+
Sbjct: 257 GPLA 260
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 162 DGSDVGGREMRV 173
+G +G R ++V
Sbjct: 368 NGYRLGDRVLQV 379
Score = 93 (37.8 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 31/133 (23%), Positives = 58/133 (43%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
NG + N S V+ + L V LP++ EL +F G + S ++ R
Sbjct: 45 NGPTTINNN---CSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVR 101
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ TG S G G++ A+ AI L+G + + ++V ++ ++ R+A +S
Sbjct: 102 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGL 161
Query: 194 KKIFVYESPHKLY 206
K + +L+
Sbjct: 162 PKTMTQKELEQLF 174
Score = 76 (31.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 368 NGYRLGDRVLQV 379
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 143 (55.4 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NLP D S L +F P G + SV++ R+ T + RG G++ M S+ + +AI
Sbjct: 381 PTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAI 440
Query: 159 IALDGSDVGGREMRVRF 175
+++G VGG+ + V F
Sbjct: 441 NSINGVQVGGKTISVSF 457
Score = 120 (47.3 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
+S + A L++ LP ++ L +F FG + S V + TG+SRG G++
Sbjct: 87 TSTSTSSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVK 146
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFS-IDMNSRTRN 185
+ SA+ AI +++G+ V + + VRF+ D NS N
Sbjct: 147 FKDVASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTN 185
Score = 94 (38.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P LYV NL L F G + S +++ D+ Q R +GF+ S A+ +A+
Sbjct: 381 PTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAI 440
Query: 262 -SLNGTDFRGRTIIV 275
S+NG G+TI V
Sbjct: 441 NSINGVQVGGKTISV 455
Score = 92 (37.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 28/118 (23%), Positives = 60/118 (50%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
N +N + ++ ++++E + +++ LP FD ++L E+F +G V+ ++
Sbjct: 196 NNNNNNNNSNNNNTNNIDEQKISNN---VFIRGLPIEFDKNQLSELFSAYGEVVESKLLI 252
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE--MRVRFSIDMNSRTRNAEAL 189
+ T SRG G + SA NA+ +L+G + E + VRF+ + + + + + L
Sbjct: 253 DITTNASRGQGLVRYIDTQSAINAVKSLNGFILQDPEKPLIVRFADNEDEKKQKRQKL 310
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 170 (64.9 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 50/168 (29%), Positives = 87/168 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L +F FG VLSV+V + E G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV---RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+ + V + +D + + ++ + I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIR-YQGIN-LYVKNLDDGIDDER 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L+ F FGT+ S +V+ + G ++ FGF+ FSS E A+S +NG
Sbjct: 310 LQKEFSPFGTITSTKVMTE--GGRSKGFGFVCFSSPEEATKAVSEMNG 355
Score = 170 (64.9 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 62/211 (29%), Positives = 104/211 (49%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R +++ NL ++ D L + F FG +LS +V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK 195
E G S+G G++ + +A+ AI ++G + R++ F SR + EA + K
Sbjct: 134 ENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKV---FVGQFKSR-KEREAELGTRTK 188
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--S 253
F +Y+ N + + L FGRFG V+S +V+ D G++ + FGF+SF
Sbjct: 189 EFT-----NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKS-KGFGFVSFERHE 242
Query: 254 DAERDAALSLNGTDFRGRTIIV---REGVDR 281
DA++ A +NG + G+ I V ++ VDR
Sbjct: 243 DAQK-AVDEMNGKELNGKHIYVGPAQKKVDR 272
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 122 (48.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + + LYV LP++ +L MF FG +++ + + +G+S+G G++
Sbjct: 118 SYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIR 177
Query: 148 MGSINSAKNAIIALDGSDVGG--REMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
N A+ AI L+G G + V+F+ N+ + +A+A I+PP + Y +P
Sbjct: 178 FDQRNEAERAIQELNGKTPKGYAEPITVKFA---NNPSNSAKAQIAPP--LTAYLTP 229
Score = 121 (47.7 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + + L ++F PFG V SV+V R+ +T +G G++TM + + A AI +L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 162 DGSDVGGREMRVRFSIDMNSRT 183
+G +G R ++V F + T
Sbjct: 335 NGYTLGNRVLQVSFKTNKTKTT 356
Score = 87 (35.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ + L FG FG V S +V+ D + + FGF++ ++ E A+ SL
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 264 NGTDFRGRTIIVREGVDRTES 284
NG R + V ++T++
Sbjct: 335 NGYTLGNRVLQVSFKTNKTKT 355
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 165 (63.1 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 45/175 (25%), Positives = 90/175 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + E G ++G G++ S+ SA AI +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R EAL K F +Y+ NL + ++ +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEAL----KANFT-----NVYIKNLDTEITEQEFSD 279
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
FG+FG + S ++ D+ + R FGF+++++ + + A LN +++G+ + V
Sbjct: 280 LFGQFGEITSLSLVKDQNDKP-RGFGFVNYANHECAQKAVDELNDKEYKGKKLYV 333
Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 50/209 (23%), Positives = 100/209 (47%)
Query: 73 INGKDNVGGNEV---DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+N K G+ V + S VE +A +Y+ NL E ++F FG + S+
Sbjct: 233 LNDKKVYVGHHVSRRERQSKVEA--LKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSL 290
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
+ ++ + RG G++ + A+ A+ L+ + G+++ V + + R
Sbjct: 291 SLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKR 349
Query: 190 ISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
K K+ Y+ + L++ NL V E L+ F FGT+ SA+++ D +G++ + FG
Sbjct: 350 YEQMKLEKMNKYQGVN-LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKS-KGFG 407
Query: 248 FISFSSDAERDAALS-LNGTDFRGRTIIV 275
F+ +++ E + A++ +N G+ + V
Sbjct: 408 FVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Score = 141 (54.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 53/198 (26%), Positives = 87/198 (43%)
Query: 88 SSVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SSV P A LYV L S + L E+F G V S+ V R+ T S G Y+
Sbjct: 67 SSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYV 126
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
++ + A+ L+ + + GR R+ +S R+ +K+ ++
Sbjct: 127 NFHNMEDGEKALDELNYTLIKGRPCRIMWS------QRDPSL-----RKM----GTGNVF 171
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ NL A+ + L + F FG ++S +V D G + +GF+ F S +AA+ +NG
Sbjct: 172 IKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNA-KGYGFVHFDSVESANAAIEHVNG 230
Query: 266 TDFRGRTIIVREGVDRTE 283
+ + V V R E
Sbjct: 231 MLLNDKKVYVGHHVSRRE 248
Score = 42 (19.8 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 78 NVGGNEVDDDSSVEEPRSRARPCE 101
N E + EEP + A P E
Sbjct: 35 NTPSTETQPEKKAEEPEAAAEPSE 58
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 167 (63.8 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 47/175 (26%), Positives = 82/175 (46%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C ++V L + D L + F+ +GT++ V + ++G S+G GY+ + +AK A+
Sbjct: 263 CTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF---VYESPHKLYVGNLSWAVKP 216
A ++ GR + + S N R N + F + E ++VGNLS+
Sbjct: 323 ANGTKEIDGRMVNLDLS---NPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATE 379
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271
+DL FG G + S R+ D + + FG+++FS + +NG GR
Sbjct: 380 DDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGR 434
Score = 120 (47.3 bits), Expect = 0.00014, P = 0.00014
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
++VG LSW V + L F +GT+V ARV+ D + ++ +G++ F + AA++ N
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 265 GT-DFRGRTI 273
GT + GR +
Sbjct: 325 GTKEIDGRMV 334
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 154 (59.3 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 52/192 (27%), Positives = 94/192 (48%)
Query: 79 VGGNEVDDDSSVE-EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
VG + ++ + E R RA ++V N+ D +L E+F +G SV+V R+ +
Sbjct: 13 VGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-S 71
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPK 194
G S+G G++ + +A+ A++ L G + G+ + R + I+ + R + +
Sbjct: 72 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKE 131
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K P +Y+ NL + E L+ F FG++ A+V+ + GQ + FG + FSS
Sbjct: 132 KSRPPGVP--IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQG-KGFGVVCFSSF 187
Query: 255 AERDAALS-LNG 265
E A+ +NG
Sbjct: 188 EEATKAVDEMNG 199
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 132 (51.5 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 35/123 (28%), Positives = 59/123 (47%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG SRG G++
Sbjct: 162 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIR 221
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + ++AL+S +Y+SP++ Y
Sbjct: 222 FDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQ-----LYQSPNRRYP 276
Query: 208 GNL 210
G L
Sbjct: 277 GPL 279
Score = 121 (47.7 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 162 DGSDVGGREMRVRFSIDMNSRT 183
+G +G R ++V F + ++
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHKS 408
Score = 83 (34.3 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 25/105 (23%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ A+ AI L
Sbjct: 90 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 149
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 150 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 194
Score = 75 (31.5 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 387 NGYRLGDRVLQVSFKTNKT 405
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 127 (49.8 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 36/123 (29%), Positives = 63/123 (51%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + LY+ LPR+ ++ +MF PFG +++ V + TG+SRG ++
Sbjct: 94 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIR 153
Query: 148 MGSINSAKNAIIALDG-SDVGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
+ A+ AI + +G G E + V+F+ + N + +N AL+S +Y SP +
Sbjct: 154 FDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPN-QNKNV-ALLSQ-----LYHSPARR 206
Query: 206 YVG 208
+ G
Sbjct: 207 FGG 209
Score = 122 (48.0 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+G + + S V P + + +++ NL + D L +MF PFG V +V+V R+ T
Sbjct: 223 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 282
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+G G++TM + A AI +L+G +G + ++V F + + +
Sbjct: 283 KCKGFGFVTMTNYEEASMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 91 (37.1 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 26/106 (24%), Positives = 49/106 (46%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+D E+ R L V LP++ EL +F G + S ++ R+ G S G G+
Sbjct: 6 EDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGF 65
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ + A+ AI L+G + + ++V ++ + ++A IS
Sbjct: 66 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYIS 111
Score = 88 (36.0 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LY+ L + +D+ + F FG ++++RVL D+ +R FI F +E + A+ S
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 264 NG 265
NG
Sbjct: 168 NG 169
Score = 76 (31.8 bits), Expect = 7.1e-10, Sum P(2) = 7.1e-10
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+++ NL L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 264 NG 265
NG
Sbjct: 306 NG 307
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 158 (60.7 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 57/194 (29%), Positives = 97/194 (50%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G V S +P R ++V NL +S + L + FG +LS V +
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK 195
E G S+G G++ + +A+ AI ++G + GR++ F SR + EA + K
Sbjct: 134 ENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV---FVGQFKSR-KEREAELGARAK 188
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--S 253
F P+ +Y+ N + E L++ FG+FG +S +V+ D G++ + FGF+SF
Sbjct: 189 EF----PN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHE 242
Query: 254 DAERDAALSLNGTD 267
DA++ A +NG +
Sbjct: 243 DAQK-AVDEMNGKE 255
Score = 111 (44.1 bits), Expect = 0.00044, P = 0.00044
Identities = 48/192 (25%), Positives = 78/192 (40%)
Query: 93 PRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
P + + P LYV +L + L E F P G +LS+ + R+ T S Y+
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHT 62
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A++A+ ++ + G+ +R+ +S R+ S IFV NL
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWS------QRDPSLRKSGVGNIFVK---------NLD 107
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271
++ + L + FG ++S V+ D G F AER A +NG GR
Sbjct: 108 KSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAER-AIKKMNGMLLNGR 166
Query: 272 TIIVREGVDRTE 283
+ V + R E
Sbjct: 167 KVFVGQFKSRKE 178
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 163 (62.4 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 56/208 (26%), Positives = 99/208 (47%)
Query: 79 VGGNEVDDDSSVE-EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
VG + ++ + E R RA ++V N D +L ++F +G SV+V R+ T
Sbjct: 177 VGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDA-T 235
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPK 194
G S+G G++ + +A+ A++ L G + G+ + R + I+ + R +
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKD 295
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K P +Y+ NL + E L+ F FG++ A+V+ + GQ + FG + FSS
Sbjct: 296 KTRPPGVP--IYIKNLDETINDEKLKEEFSLFGSISRAKVMME-VGQG-KGFGVVCFSSF 351
Query: 255 AERDAALS-LNGTDFRGRTIIVREGVDR 281
E A++ +NG +T+ V G R
Sbjct: 352 EEASKAVNEMNGRVVGSKTLHVTLGQAR 379
Score = 151 (58.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 49/184 (26%), Positives = 88/184 (47%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L +F FG +LS +V + + G S+G Y+ S+ +A AI +
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHFDSLAAANRAIWHM 165
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF R AE + + F ++V N + E L+
Sbjct: 166 NGVRLNNRQVYVGRFKFP---EERAAEVR-TRDRATFT-----NVFVKNFGDDIDDEKLK 216
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
F +G S +V+ D G++ + FGF+ + + +A + A L L+G G+ + V
Sbjct: 217 KLFSEYGPTESVKVIRDATGKS-KGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQ 275
Query: 280 DRTE 283
+ E
Sbjct: 276 KKIE 279
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 144 (55.7 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDA 259
S +K+YVG+LS+ V ++L++ FG++G + A+++ DR+ ++ F FI++ + DA ++A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 260 ALSLNGTDFRGRTI---IVREGV-DR 281
NG D +GR I I RE DR
Sbjct: 76 VSKANGIDLQGRKIRVNIARENTGDR 101
Score = 106 (42.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 101 ELYVCNLPRSFDIS--ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
++YV +L S+D++ EL F +G + ++ + ETG S+G ++T G+ ++A+ A+
Sbjct: 19 KIYVGSL--SYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
Query: 159 IALDGSDVGGREMRVRFS 176
+G D+ GR++RV +
Sbjct: 77 SKANGIDLQGRKIRVNIA 94
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 144 (55.7 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 32/86 (37%), Positives = 55/86 (63%)
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDA 259
S +K+YVG+LS+ V ++L++ FG++G + A+++ DR+ ++ F FI++ + DA ++A
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
Query: 260 ALSLNGTDFRGRTI---IVREGV-DR 281
NG D +GR I I RE DR
Sbjct: 76 VSKANGIDLQGRKIRVNIARENTGDR 101
Score = 106 (42.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 101 ELYVCNLPRSFDIS--ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
++YV +L S+D++ EL F +G + ++ + ETG S+G ++T G+ ++A+ A+
Sbjct: 19 KIYVGSL--SYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
Query: 159 IALDGSDVGGREMRVRFS 176
+G D+ GR++RV +
Sbjct: 77 SKANGIDLQGRKIRVNIA 94
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 167 (63.8 bits), Expect = 8.7e-10, P = 8.7e-10
Identities = 51/202 (25%), Positives = 100/202 (49%)
Query: 80 GGNEVDD-DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
GG +++D D +E + ++V +L + +L E F PFG + V R+P+T
Sbjct: 440 GGQDMEDSDEEMEYMPPLHKQFHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTL 499
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIF 197
S+G G+++ + A++AI A++G +G R +R ++ ++ N + L +++
Sbjct: 500 KSKGYGFVSFIKKSEAESAITAMNGQWLGSRSIRTNWATRKPPASKENIKPLTFD--EVY 557
Query: 198 VYESPHK--LYVGNLS---WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
SP +YVG ++ A+ E L+ F +G + RV D KG + F+ FS
Sbjct: 558 NQSSPSNCTVYVGGVNSALTALSEEVLQKTFAPYGAIQEIRVFKD-KG-----YAFVRFS 611
Query: 253 S-DAERDAALSLNGTDFRGRTI 273
+ +A A + ++ T+ + +
Sbjct: 612 TKEAATHAIVGVHNTEINAQPV 633
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 161 (61.7 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 50/184 (27%), Positives = 86/184 (46%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L + L E F +GT+ V NP+T SR G++T ++ A +A +
Sbjct: 28 CKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEA-DAAM 86
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
A V G + ++ ++ SR +A+ P + KL+VG L V DL
Sbjct: 87 AASPHAVDGNSVELKRAV---SREDSAK-----PG---AHAKVKKLFVGGLKGDVGEGDL 135
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279
HF +FG V A ++ D++ R FGF+ F + D A + +G + V++ V
Sbjct: 136 VQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAV 195
Query: 280 DRTE 283
+ +
Sbjct: 196 PKED 199
Score = 119 (46.9 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF +GT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 29 KLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEADAAMAA 88
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G ++ ++ V R +S
Sbjct: 89 SPHAVDGNSVELKRAVSREDS 109
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 164 (62.8 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 50/170 (29%), Positives = 86/170 (50%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ +PR+ D +L +F+ FG + + V ++ TG+ +GC +LT SA A A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 161 L-DGSDVGG--REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
L + + G R ++V+ D SR + L PP + KL+VG L+ +
Sbjct: 115 LHEQKTLPGMNRPIQVK-PADSESRG-GSSCLRQPPSQ------DRKLFVGMLNKQQSED 166
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGT 266
D+R F FG + +L G + + F+ +SS AE AA++ L+G+
Sbjct: 167 DVRRLFEAFGNIEECTILRGPDGNS-KGCAFVKYSSHAEAQAAINALHGS 215
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 164 (62.8 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 50/170 (29%), Positives = 86/170 (50%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ +PR+ D +L +F+ FG + + V ++ TG+ +GC +LT SA A A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 161 L-DGSDVGG--REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
L + + G R ++V+ D SR + L PP + KL+VG L+ +
Sbjct: 115 LHEQKTLPGMNRPIQVK-PADSESRG-GSSCLRQPPSQ------DRKLFVGMLNKQQSED 166
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGT 266
D+R F FG + +L G + + F+ +SS AE AA++ L+G+
Sbjct: 167 DVRRLFEAFGNIEECTILRGPDGNS-KGCAFVKYSSHAEAQAAINALHGS 215
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 164 (62.8 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 50/170 (29%), Positives = 86/170 (50%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ +PR+ D +L +F+ FG + + V ++ TG+ +GC +LT SA A A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 161 L-DGSDVGG--REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
L + + G R ++V+ D SR + L PP + KL+VG L+ +
Sbjct: 115 LHEQKTLPGMNRPIQVK-PADSESRG-GSSCLRQPPSQ------DRKLFVGMLNKQQSED 166
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGT 266
D+R F FG + +L G + + F+ +SS AE AA++ L+G+
Sbjct: 167 DVRRLFEAFGNIEECTILRGPDGNS-KGCAFVKYSSHAEAQAAINALHGS 215
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 125 (49.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 33/106 (31%), Positives = 58/106 (54%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SV P S + + LY+ LPR+ ++ +MF PFG +++ V + TG+SRG ++
Sbjct: 94 SVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIR 153
Query: 148 MGSINSAKNAIIALDG-SDVGGRE-MRVRFSIDMNSRTRNAEALIS 191
+ A+ AI + +G G E + V+F+ + N + +N AL+S
Sbjct: 154 FDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPN-QNKNM-ALLS 197
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+G + + S V S + +++ NL + D L +MF PFG V +V+V R+ T
Sbjct: 223 MGVDHMSSISGVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 282
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
+G G++TM + A AI +L+G +G + ++V F
Sbjct: 283 KCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVFF 319
Score = 84 (34.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LY+ L + +D+ + F FG ++++RVL D+ +R FI F +E + A+ S
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 264 NG 265
NG
Sbjct: 168 NG 169
Score = 82 (33.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ EL +F G V S ++ R+ G S G G++ + A+ AI L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G + + ++V + + ++A IS
Sbjct: 82 NGLRLQSKTIKVSVARPSSESIKDANLYIS 111
Score = 77 (32.2 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+++ NL L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGTDFRGRTIIV 275
NG +T+ V
Sbjct: 306 NGYRLGDKTLQV 317
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 143 (55.4 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALS 262
KL+VG LSW L+ F FG V A V+ DR+ +R FGF+SFS D+ +A
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 263 LNGTDFRGRTIIVREGVDRTES 284
++G + GR I V +R+ +
Sbjct: 96 MDGKELNGRQIRVNLATERSSA 117
Score = 137 (53.3 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L D S L + F FG V V + ETG SRG G+++ +SA NAI
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNA 186
+DG ++ GR++RV + + +S R++
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSS 121
>UNIPROTKB|Q48A10 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0724 RefSeq:YP_267104.1 ProteinModelPortal:Q48A10
STRING:Q48A10 GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 143 (55.4 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E LYVGNL + +R F G+V S R++ D+ R FGF+ +SD + D
Sbjct: 68 EDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASD-DLDK 126
Query: 260 ALS-LNGTDFRGRTIIVREGVDRTE 283
A+S LN T+F+ RT+ VRE +R E
Sbjct: 127 AISALNDTEFQQRTLKVREAKERPE 151
Score = 109 (43.4 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + + + E+F G+V SV + ++ TG RG G++ M S + K AI AL
Sbjct: 73 LYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDK-AISAL 131
Query: 162 DGSDVGGREMRVRFSIDMNSRTRN 185
+ ++ R ++VR + + RT +
Sbjct: 132 NDTEFQQRTLKVREAKERPERTED 155
>TIGR_CMR|CPS_0338 [details] [associations]
symbol:CPS_0338 "RNA-binding protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0724
RefSeq:YP_267104.1 ProteinModelPortal:Q48A10 STRING:Q48A10
GeneID:3519770 KEGG:cps:CPS_0338 PATRIC:21464063
HOGENOM:HOG000269562 BioCyc:CPSY167879:GI48-441-MONOMER
Uniprot:Q48A10
Length = 160
Score = 143 (55.4 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E LYVGNL + +R F G+V S R++ D+ R FGF+ +SD + D
Sbjct: 68 EDVRTLYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASD-DLDK 126
Query: 260 ALS-LNGTDFRGRTIIVREGVDRTE 283
A+S LN T+F+ RT+ VRE +R E
Sbjct: 127 AISALNDTEFQQRTLKVREAKERPE 151
Score = 109 (43.4 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + + + E+F G+V SV + ++ TG RG G++ M S + K AI AL
Sbjct: 73 LYVGNLPYRANETSVRELFSEHGSVHSVRLMKDKHTGKRRGFGFVEMASDDLDK-AISAL 131
Query: 162 DGSDVGGREMRVRFSIDMNSRTRN 185
+ ++ R ++VR + + RT +
Sbjct: 132 NDTEFQQRTLKVREAKERPERTED 155
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 124 (48.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 40/151 (26%), Positives = 70/151 (46%)
Query: 44 SSCWSRSHPAGFRSVLXXXXXXXXXXXXXINGKDNVGGNEVDDDSSVEEPRSRA-RPCEL 102
SS S+ H G+ V +NG + + S P S + + L
Sbjct: 63 SSSLSKGHSLGYGFVNYLNAKDAERAINTLNGL-RLQSKTIK--VSFARPSSESIKDANL 119
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
Y+ LPR+ ++ +MF PFG +++ V + TG+SRG ++ + A+ AI + +
Sbjct: 120 YISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFN 179
Query: 163 G-SDVGGRE-MRVRFSIDMNSRTRNAEALIS 191
G G E + V+F+ + N + +N AL+S
Sbjct: 180 GHKPPGSSEPITVKFAANPN-QNKNV-ALLS 208
Score = 124 (48.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 32/97 (32%), Positives = 52/97 (53%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+G + + SSV S ++V NL + D L +MF PFG V +V+V R+ T
Sbjct: 234 MGVDHMSSISSVNVASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 293
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
+G G++TM + A AI +L+G +G + ++V F
Sbjct: 294 KCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 330
Score = 78 (32.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 264 NGTDFRGRTIIV 275
NG +T+ V
Sbjct: 317 NGYRLGDKTLQV 328
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 126 (49.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 35/125 (28%), Positives = 65/125 (52%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ E+ ++F +G +++ + + TG+SRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSD-VGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
A+ AI L+G +G E + V+F+ + + +T +AL++ +Y+S +
Sbjct: 173 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT--GQALLT-----HLYQSSARR 225
Query: 206 YVGNL 210
Y G L
Sbjct: 226 YAGPL 230
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 91 (37.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ N A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Score = 77 (32.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NG 265
NG
Sbjct: 346 NG 347
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 126 (49.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 35/125 (28%), Positives = 65/125 (52%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ E+ ++F +G +++ + + TG+SRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSD-VGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
A+ AI L+G +G E + V+F+ + + +T +AL++ +Y+S +
Sbjct: 173 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT--GQALLT-----HLYQSSARR 225
Query: 206 YVGNL 210
Y G L
Sbjct: 226 YAGPL 230
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 91 (37.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ N A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Score = 77 (32.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NG 265
NG
Sbjct: 346 NG 347
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 141 (54.7 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
++YVGNLS + LR F +G VV A V+ DR +R FGF+++SS +E +AA+S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 263 LNGTDFRGRTIIVR 276
++G + GR + V+
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 109 (43.4 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 102 LYVCNL-PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+YV NL P + D L E F +G V+ V R+ T SRG G++T S + A+ A+
Sbjct: 5 VYVGNLSPTTTD-DMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 161 LDGSDVGGREMRVR-FSI 177
+DG ++ GR + V+ F I
Sbjct: 64 MDGKELNGRRVSVKLFGI 81
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 163 (62.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 60/214 (28%), Positives = 99/214 (46%)
Query: 85 DDDSSVEEPRSRARPCE--------------LYVCNLPRSFDISELLEMFKPFGTVLSVE 130
DDD S E RSR+RP E ++V L EL + F+ G V +
Sbjct: 211 DDDRSHERKRSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQ 270
Query: 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS-IDMNSRTRNAEAL 189
+ R+ +G S+G Y+ +S + A IAL G + G + V+ + + N + R A L
Sbjct: 271 IVRDKISGRSKGVAYVEFCHEDSVQ-AAIALSGKRLLGLPVIVQLTEAEKNRKAREAAEL 329
Query: 190 ISPPKKIFVYESP-HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
E P H+L V N+ + + ED++ F FG + + D + ++ + FG+
Sbjct: 330 ARAASA----EIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRS-KGFGY 384
Query: 249 ISFSSD-AERDAALSLNGTDFRGRTIIVREGVDR 281
I + + + R+A +NG D GR + V G D+
Sbjct: 385 IQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 124 (48.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 35/125 (28%), Positives = 65/125 (52%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ E+ ++F +G +++ + + TG+SRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSD-VGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
A+ AI L+G +G E + V+F+ + + +T +AL++ +Y+S +
Sbjct: 173 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT--GQALLT-----HLYQSSARR 225
Query: 206 YVGNL 210
Y G L
Sbjct: 226 YAGPL 230
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 91 (37.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ N A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Score = 77 (32.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NG 265
NG
Sbjct: 346 NG 347
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 124 (48.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 35/125 (28%), Positives = 65/125 (52%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ E+ ++F +G +++ + + TG+SRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSD-VGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
A+ AI L+G +G E + V+F+ + + +T +AL++ +Y+S +
Sbjct: 173 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT--GQALLT-----HLYQSSARR 225
Query: 206 YVGNL 210
Y G L
Sbjct: 226 YAGPL 230
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 91 (37.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ N A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Score = 77 (32.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NG 265
NG
Sbjct: 346 NG 347
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 124 (48.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 35/125 (28%), Positives = 65/125 (52%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ E+ ++F +G +++ + + TG+SRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSD-VGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
A+ AI L+G +G E + V+F+ + + +T +AL++ +Y+S +
Sbjct: 173 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT--GQALLT-----HLYQSSARR 225
Query: 206 YVGNL 210
Y G L
Sbjct: 226 YAGPL 230
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 346 NGYRLGERVLQVSF 359
Score = 91 (37.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ N A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Score = 77 (32.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 264 NG 265
NG
Sbjct: 346 NG 347
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 124 (48.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 35/125 (28%), Positives = 65/125 (52%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ E+ ++F +G +++ + + TG+SRG G++
Sbjct: 113 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 172
Query: 148 MGSINSAKNAIIALDGSD-VGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
A+ AI L+G +G E + V+F+ + + +T +AL++ +Y+S +
Sbjct: 173 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT--GQALLTQ-----LYQSSARR 225
Query: 206 YVGNL 210
Y G L
Sbjct: 226 YAGPL 230
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 347 NGYRLGERVLQVSF 360
Score = 91 (37.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ E +F G + S ++ R+ TG S G G++ N A AI L
Sbjct: 41 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + + ++V ++ ++ R+A +S K + +L+
Sbjct: 101 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLF 145
Score = 77 (32.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 264 NG 265
NG
Sbjct: 347 NG 348
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 163 (62.4 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 45/165 (27%), Positives = 81/165 (49%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V N D +L MF FG + S V + + G +G G++ ++A A+ L
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKL 298
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS----PPKKIFVYESPHKLYVGNLSWAVKPE 217
+ S + G + ++ R+AE +++ Y+ + LYV N+ + +
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVN-LYVKNIEEDLNDD 357
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LR+HF FGT+ SA+V+ D G++ + FGF+ F E AA++
Sbjct: 358 GLRDHFSSFGTITSAKVMVDENGRS-KGFGFVCFEKPEEATAAVT 401
Score = 143 (55.4 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 51/184 (27%), Positives = 90/184 (48%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P +R A +++ NL R D + + F FG +LS +V+ + E G S+G G++
Sbjct: 133 SQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVH 191
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ +SA+ AI ++G + +++ V R + + L K Y + ++V
Sbjct: 192 FETEHSAQTAIEKVNGMLLSDKKVYVG---KFQPRAQRMKELGESGLK---YTN---VFV 242
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
N + E L F +FG + SA V+ D +G+ + FGF++F+ DA A LN +
Sbjct: 243 KNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKP-KGFGFVAFADQDAAGQAVEKLNDS 301
Query: 267 DFRG 270
G
Sbjct: 302 ILEG 305
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 43/176 (24%), Positives = 79/176 (44%)
Query: 93 PRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
P + LY+ +L D+SE L E F G VLS+ V R+ + +S G Y+
Sbjct: 50 PNATYSMASLYIGDLHP--DVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQ 107
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
A+ A+ ++ + GR MR+ +S + R A +++ NL
Sbjct: 108 PADAERALDTMNFEVIHGRPMRIMWS-QRDPAARRA--------------GNGNIFIKNL 152
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ + + + F FG ++S +V D +G + + +GF+ F ++ A+ +NG
Sbjct: 153 DRVIDNKSVYDTFSLFGNILSCKVATDDEGNS-KGYGFVHFETEHSAQTAIEKVNG 207
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 157 (60.3 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 36/101 (35%), Positives = 57/101 (56%)
Query: 185 NAEALISPPKKIFVYE--SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
NA+ +S P S KL++G +++++ + LR F ++G VV RV+ DR+
Sbjct: 20 NAQVSLSSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGR 79
Query: 243 TRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVDRT 282
+R FGF++F SS+A A +L+G D GR + V DRT
Sbjct: 80 SRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYANDRT 120
Score = 138 (53.6 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ + S D L E F +G V+ V + ETG SRG G++T S +A +AI A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 161 LDGSDVGGREMRVRFSIDMNS 181
LDG D+ GR ++V ++ D S
Sbjct: 101 LDGRDLHGRVVKVNYANDRTS 121
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 126 (49.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNA 186
+G +G R ++V F S+T A
Sbjct: 368 NGYRLGDRVLQVSFK---TSKTHKA 389
Score = 124 (48.7 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 33/124 (26%), Positives = 58/124 (46%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 141 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 200
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
A+ AI L+G G + N + ++S +Y+SP++ Y
Sbjct: 201 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKVNHTILSQ-----LYQSPNRRYP 255
Query: 208 GNLS 211
G L+
Sbjct: 256 GPLA 259
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 46/192 (23%), Positives = 82/192 (42%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
N ++ S VE + L V LP++ EL +F G + S ++ R+ T +
Sbjct: 48 NTINCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITE-GQ 106
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
GY G +N +D D E + + +T+ + + P + ++
Sbjct: 107 SLGY---GFVNY-------IDPKDA---EKAINTLNGLRLQTKTIKVSYARPSSASIRDA 153
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
LYV L + ++L F ++G ++++R+L D+ +R GFI F E + A+
Sbjct: 154 --NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 211
Query: 262 S-LNGTDFRGRT 272
LNG G T
Sbjct: 212 KGLNGQKPPGAT 223
Score = 77 (32.2 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V +T
Sbjct: 368 NGYRLGDRVLQVSFKTSKT 386
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 158 (60.7 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 53/177 (29%), Positives = 80/177 (45%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L V +P D L + FG + V ++ TG SRG GY+T S AKNA
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA--- 60
Query: 161 LDGSD-VGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L G +G R + V+ + E + P KK+ +++V + +V D
Sbjct: 61 LKGEHFLGNRILEVKVATPK-------EEMRQPAKKVT------RIFVARIPSSVSESDF 107
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
R+HF R+G + + D + R GFI+FSS D+ D L + D G T+ V
Sbjct: 108 RSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED--LMEDTHDLGGTTVAV 162
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 162 (62.1 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 50/182 (27%), Positives = 82/182 (45%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA---I 158
L+V LP S +L E+F G V V + RG GY+T + + A I
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMVEDVQRALKEI 65
Query: 159 IALDGSDVGGR--EMRVRFSIDMNSRTRNAEALISP--PKKIFVYESPHKLYVGNLSWAV 214
+G + + ++R +T N+E+ PKK V + +L + NLS+
Sbjct: 66 TTFEGCKINVTIAKKKLRNKSKEKGKTENSESPEKELKPKKAKVADKKARLIIRNLSFKC 125
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 273
+DL+ F +FGT++ + G+ R F F+ F + E AL +N + +GRT+
Sbjct: 126 SEDDLKTVFSQFGTILEVNIPRKPDGKM-RGFAFVQFKNLLEAGKALKGMNMKEIKGRTV 184
Query: 274 IV 275
V
Sbjct: 185 AV 186
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 138 (53.6 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 25/56 (44%), Positives = 40/56 (71%)
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
V +S H+++VGNL W V ++LR +F FG VVSA V+ D++ ++ +GF+SF+S
Sbjct: 10 VGKSVHRIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNS 65
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 159 (61.0 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 46/178 (25%), Positives = 84/178 (47%)
Query: 110 SFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
S+D +E L E F FG V+ + ++ TG +RG G++ + A I+ + ++
Sbjct: 14 SWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA--DPAVAEIVITEKHNID 71
Query: 168 GREMRVRFSI---DMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHF 223
GR + + ++ D N R N+ ++ P K++VG L +V D + +F
Sbjct: 72 GRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGP---GRTRKIFVGGLPSSVTESDFKTYF 128
Query: 224 GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDR 281
+FGT V++D Q R FGFI++ S+ + L + G+ + V+ V +
Sbjct: 129 EQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPK 186
Score = 121 (47.7 bits), Expect = 0.00011, P = 0.00011
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G +SW E L+ +F FG V+ A +L DR R FGF+ F+ A + ++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVIT- 65
Query: 264 NGTDFRGRTIIVREGVDRTE 283
+ GR + ++ V R +
Sbjct: 66 EKHNIDGRLVEAKKAVPRDD 85
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 159 (61.0 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 49/189 (25%), Positives = 93/189 (49%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ ++V +L + +L + F PFG + V R+P+T S+G G+++ + A
Sbjct: 91 SKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEA 150
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTR---NAEALISPPKKIFVYESPHK--LYVGN 209
+ AI A++G +G R +R ++ T+ NA+ L +++ SP +Y G
Sbjct: 151 ETAITAMNGQWLGSRSIRTNWATRKPPATKADMNAKPLTFD--EVYNQSSPTNCTVYCGG 208
Query: 210 LSWAVK----PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
++ A+ E L+ F +GT+ RV D KG + F+ FS+ +A A +++N
Sbjct: 209 INGALSGFLNEEILQKTFSPYGTIQEIRVFKD-KG-----YAFVRFSTKEAATHAIVAVN 262
Query: 265 GTDFRGRTI 273
T+ + +
Sbjct: 263 NTEINQQPV 271
>WB|WBGene00004984 [details] [associations]
symbol:spn-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0060465 "pharynx development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0060465 GO:GO:0043186 HSSP:P09651
GeneTree:ENSGT00390000013767 KO:K14946 EMBL:FO081573 EMBL:AB052819
PIR:T29369 RefSeq:NP_504717.1 UniGene:Cel.6040
ProteinModelPortal:G5EF02 SMR:G5EF02 IntAct:G5EF02
EnsemblMetazoa:ZC404.8.1 EnsemblMetazoa:ZC404.8.2 GeneID:179070
KEGG:cel:CELE_ZC404.8 CTD:179070 WormBase:ZC404.8 OMA:FTDNRIY
NextBio:903784 Uniprot:G5EF02
Length = 351
Score = 156 (60.0 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 46/135 (34%), Positives = 68/135 (50%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
+ KD + + EP S +YV N+P SF +L MF +G VLSVE+
Sbjct: 26 SNKDPIFTMPISVKPKTREPASFTDN-RIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVT 84
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-RNAEALISP 192
N + G S+G G++T+ SI S + A AL S V GR + VR + + N + + P
Sbjct: 85 N-DRG-SKGFGFVTLDSIESCEKARAALHESHVQGRIIEVRRATPTRRKLINNPQNEVLP 142
Query: 193 PKKIFV-YESPHKLY 206
P K+ V +PH L+
Sbjct: 143 PPKLCVDLRAPHNLW 157
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 137 (53.3 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSL 263
LYVGNL W ++ E L+ FG V+ ARV+ ++ +R +GFI DAE+ L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMT-GL 63
Query: 264 NGTDFRGRTIIVREGVDR 281
NG + GR ++V E +R
Sbjct: 64 NGKEVEGRQLVVSEARER 81
Score = 101 (40.6 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP +L E+ FG V+ V TG SRG G++ + A+ + L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMTGL 63
Query: 162 DGSDVGGREMRVRFSIDMN 180
+G +V GR++ V + + N
Sbjct: 64 NGKEVEGRQLVVSEARERN 82
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 137 (53.3 bits), Expect = 5.0e-09, P = 5.0e-09
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSL 263
LYVGNL W ++ E L+ FG V+ ARV+ ++ +R +GFI DAE+ L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMT-GL 63
Query: 264 NGTDFRGRTIIVREGVDR 281
NG + GR ++V E +R
Sbjct: 64 NGKEVEGRQLVVSEARER 81
Score = 101 (40.6 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP +L E+ FG V+ V TG SRG G++ + A+ + L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRD-EDAEKFMTGL 63
Query: 162 DGSDVGGREMRVRFSIDMN 180
+G +V GR++ V + + N
Sbjct: 64 NGKEVEGRQLVVSEARERN 82
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 124 (48.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 31/97 (31%), Positives = 53/97 (54%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+G + + SSV S + +++ NL + D L +MF PFG V +V+V R+ T
Sbjct: 223 MGVDHMSSISSVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 282
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
+G G++TM + A AI +L+G +G + ++V F
Sbjct: 283 KCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 319
Score = 119 (46.9 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 32/106 (30%), Positives = 57/106 (53%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + LY+ LPR+ ++ +MF PFG +++ V + TG+SRG ++
Sbjct: 94 SFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIR 153
Query: 148 MGSINSAKNAIIALDG-SDVGGRE-MRVRFSIDMNSRTRNAEALIS 191
+ A+ AI + +G G E + V+F+ + N +++N AL+S
Sbjct: 154 FDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPN-QSKNM-ALLS 197
Score = 89 (36.4 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ EL +F G V S ++ R+ G S G G++ + A+ AI L
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G + + ++V F+ + ++A IS
Sbjct: 82 NGLRLQSKTIKVSFARPSSETIKDANLYIS 111
Score = 83 (34.3 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LY+ L + +D+ + F FG ++++RVL D+ +R FI F +E + A+ S
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 264 NG 265
NG
Sbjct: 168 NG 169
Score = 77 (32.2 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+++ NL L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NGTDFRGRTIIV 275
NG +T+ V
Sbjct: 306 NGYRLGDKTLQV 317
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 157 (60.3 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 47/169 (27%), Positives = 84/169 (49%)
Query: 110 SFDIS-ELLEM-FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
S D+S ELL+ F FG V +V R+ +T S+G G+++ + +A+NAI ++G +G
Sbjct: 233 SKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIG 292
Query: 168 GREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPHKLYVGNLSWAVKPEDLRNHFGR 225
R +R ++ NS N + L +++F +YVGN+S DLR+ F
Sbjct: 293 KRAVRTNWAARKNSE-ENRDKLTF--EQVFNSTKADNTSVYVGNISQQTTDADLRDLFST 349
Query: 226 FGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+G + R+ +T R + F+ + + A + +NG + G +
Sbjct: 350 YGDIAEVRIF-----KTQR-YAFVRYEKKECATKAIMEMNGKEMAGNQV 392
Score = 112 (44.5 bits), Expect = 0.00097, P = 0.00097
Identities = 26/76 (34%), Positives = 47/76 (61%)
Query: 192 PPKKIFVYESPH-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
PP ++ + S H ++VG+LS V E L++ F +FG V A+V+ D + Q ++ +GF+S
Sbjct: 213 PPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVS 272
Query: 251 FSSDAERDAALS-LNG 265
F + + A++ +NG
Sbjct: 273 FPNKQNAENAIAGMNG 288
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 121 (47.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L ++F PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 338 NGYRLGDRVLQVSF 351
Score = 119 (46.9 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 35/126 (27%), Positives = 66/126 (52%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET-GISRGCGYL 146
S P S + R LYV LP++ ++ ++F +G +++ + + T GISRG G++
Sbjct: 112 SYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFI 171
Query: 147 TMGSINSAKNAIIALDGSD-VGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
N A+ AI L+G +G E + V+F+ + + +T +AL++ +Y++ +
Sbjct: 172 RFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT--GQALLTQ-----LYQTAAR 224
Query: 205 LYVGNL 210
Y G L
Sbjct: 225 RYTGPL 230
Score = 78 (32.5 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 23/72 (31%), Positives = 35/72 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NLS L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 264 NGTDFRGRTIIV 275
NG R + V
Sbjct: 338 NGYRLGDRVLQV 349
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 156 (60.0 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 52/179 (29%), Positives = 89/179 (49%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P +R + ++V NL S D +L +MF FG VLS +V+R+ +G+S+G G++
Sbjct: 19 SERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQ 77
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S S A +G+ + + + V + ++ ++F +YV
Sbjct: 78 FYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKS---------RVFT-----NVYV 123
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNG 265
NL DL+ FG FG + SA V+ D +G++ R FGF++F ++A A +NG
Sbjct: 124 KNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRR-FGFVNFEKAEAAVTAIEKMNG 181
Score = 155 (59.6 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 53/177 (29%), Positives = 83/177 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + ++L +F FG + S V ++ E G SR G++ +A AI +
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPEDL 219
+G V +E+ V + +RT + +A K I ++ LYV NL +V L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA-LSLNGTDFRGRTIIV 275
F FGT+ S +V+ G + V GF+ FS+ E A L +NG + I V
Sbjct: 240 EELFSEFGTITSCKVMVHSNGISKGV-GFVEFSTSEEASKAMLKMNGKMVGNKPIYV 295
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 136 (52.9 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E KL++G LS+ E LR+HF ++GT+ V+ D + +R FGF+++++ E DA
Sbjct: 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
A++ GR + + V R +S
Sbjct: 71 AMNARPHKVDGRVVEPKRAVSREDS 95
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 136 (52.9 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVGNL + V +++ FG FG V S R++ DRK + FGF+ S + A + LN
Sbjct: 66 LYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQKAMVKLN 125
Query: 265 GTDFRGRTIIVRE 277
+F+ RT+ VRE
Sbjct: 126 DFNFQERTLKVRE 138
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 136 (52.9 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVGNL + V +++ FG FG V S R++ DRK + FGF+ S + A + LN
Sbjct: 66 LYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEMSEAGAQKAMVKLN 125
Query: 265 GTDFRGRTIIVRE 277
+F+ RT+ VRE
Sbjct: 126 DFNFQERTLKVRE 138
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 156 (60.0 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 57/205 (27%), Positives = 94/205 (45%)
Query: 86 DDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
D S V EP P E ++ L +L E F G V V + + + S
Sbjct: 134 DKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+G Y+ ++S AI L G V G + V+ S + A A+ + +K
Sbjct: 194 KGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQAS---QAEKNRAAAMANNLQKGSA-- 247
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDA 259
P +LYVG+L + + + LR F FG + S +++ D + ++ +GFI+FS S+ + A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
LNG + GR + V +RT++
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDA 332
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 153 (58.9 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 50/180 (27%), Positives = 85/180 (47%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL S++++E L + F+ FG LS + +TG SRG GY+ + A A
Sbjct: 279 LFVGNL--SWNVTEEWLHQEFEQFGE-LSARIMTERDTGRSRGFGYVEFTNAADAAKAYE 335
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNA---EALISPPKKIFVYESPHK--LYVGNLSWAV 214
A+ ++ GR++ + ++ + E + + SP L+VGNL ++
Sbjct: 336 AMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPFSA 395
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ + FG G V+ R+ D + + FG++ +SS D R A L G + GR I
Sbjct: 396 NEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGRPI 455
Score = 128 (50.1 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S + + E+F P G VL + + + E+G +G GY+ S++ A+ A L
Sbjct: 386 LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNEL 445
Query: 162 DGSDVGGREMRVRFS 176
G+++ GR +R+ FS
Sbjct: 446 QGAEIDGRPIRLDFS 460
Score = 42 (19.8 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 82 NEVDDDSSVEE--PRSRARPCE 101
++ DD+SS EE P+++A+ E
Sbjct: 169 SDSDDESSEEEEVPKAKAKAAE 190
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 155 (59.6 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 50/208 (24%), Positives = 93/208 (44%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+N + D SS R++ ++V +L ++ F PFG + V
Sbjct: 78 VNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 137
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRNAEA 188
++ TG S+G G+++ + A+NAI + G +GGR++R ++ T +
Sbjct: 138 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 197
Query: 189 LISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
++ SP+ +Y G ++ + + +R F FG ++ RV D KG +
Sbjct: 198 KQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-KG-----Y 251
Query: 247 GFISFSS-DAERDAALSLNGTDFRGRTI 273
F+ FSS ++ A +S+NGT G +
Sbjct: 252 SFVRFSSHESAAHAIVSVNGTTIEGHVV 279
Score = 145 (56.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 46/179 (25%), Positives = 89/179 (49%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NL R + +L++F G + ++ + G C ++ A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDPYC-FVEFHEHRHAAAAL 63
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEA--LISPPKKIFVYESPHKLYVGNLSWAVKP 216
A++G + G+E++V ++ +S+ ++ + ++S + + ++VG+LS +
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRS----QDHFHVFVGDLSPEITT 119
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTI 273
ED++ F FG + ARV+ D ++ +GF+SF + DAE +A + G GR I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE-NAIQQMGGQWLGGRQI 177
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 154 (59.3 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 53/208 (25%), Positives = 98/208 (47%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132
I GKD + N SS + + + ++V +L ++ F PFG + V
Sbjct: 73 ILGKD-MKVNWASTPSS--QKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDARVV 129
Query: 133 RNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTR-NAEALIS 191
++ TG S+G G+++ + A++AI ++G +GGR++R ++ S + N E S
Sbjct: 130 KDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASS 189
Query: 192 PP---KKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
+++ SP +Y G ++ + + +R F FG ++ RV + KG +
Sbjct: 190 KHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE-KG-----Y 243
Query: 247 GFISFSS-DAERDAALSLNGTDFRGRTI 273
F+ F S + A +S+NGT G T+
Sbjct: 244 SFVRFDSHEGAAHAIVSVNGTCIEGHTV 271
Score = 140 (54.3 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 48/178 (26%), Positives = 88/178 (49%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+P LYV NL R + +L++F G S ++ + TG C ++ A A
Sbjct: 7 QPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDT-TGNDPYC-FVEFYENRHAAAA 64
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKP 216
+ A++G + G++M+V ++ +S+ ++ S H ++VG+LS +
Sbjct: 65 LAAMNGRKILGKDMKVNWASTPSSQKKDT--------------SNHFHVFVGDLSPEIST 110
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 273
+D+R F FG + ARV+ D ++ +GFISF + + ++A+ +NG GR I
Sbjct: 111 DDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQI 168
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 159 (61.0 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 51/182 (28%), Positives = 81/182 (44%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA---I 158
L+V LP S +L E+F G V V + RG GY+T + + A I
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 159 IALDGS--DVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAV 214
+G +V + ++R + N+E PK K V + +L + NLS+
Sbjct: 66 TTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKC 125
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 273
+DL+ F +FG V+ + G+ R FGF+ F + E AL +N + +GRT+
Sbjct: 126 SEDDLKTVFAQFGAVLEVNIPRKPDGKM-RGFGFVQFKNLLEAGKALKGMNMKEIKGRTV 184
Query: 274 IV 275
V
Sbjct: 185 AV 186
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 159 (61.0 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 46/175 (26%), Positives = 89/175 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R + + K F +YV N++ V ++ R
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFDEM----KANFT-----NIYVKNINPEVTDDEFRT 260
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F ++G V S+ + D++ +R FGF++F+S + A+ LN +F G+ + V
Sbjct: 261 LFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYV 315
Score = 147 (56.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 44/155 (28%), Positives = 70/155 (45%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +E +A +YV N+ E +F+ +G V S ++R+ ETG SRG G
Sbjct: 229 DRQSKFDE--MKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFG 286
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S A A+ L+ + G+ + V + + R + K Y+
Sbjct: 287 FVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGV 346
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NL V E LR F FG + SA+V+ D
Sbjct: 347 N-LYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 134 (52.2 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 53/214 (24%), Positives = 93/214 (43%)
Query: 78 NVG----GNEVDDDS---SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130
NVG G E+D S P +A LYV L S + L E+F G+V S+
Sbjct: 33 NVGASFTGEEIDTAGPTPSSAAPHPQAS-ASLYVGELDPSVTEAMLFELFSQIGSVASIR 91
Query: 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 190
V R+ T S G Y+ + + A+ L+ + + GR R+ +S + AL
Sbjct: 92 VCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWS-------QRDPAL- 143
Query: 191 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
+K +++ NL A+ + L + F FG ++S +V D G + + +GF+
Sbjct: 144 ---RKT----GQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNS-KGYGFVH 195
Query: 251 FSSDAERDAALS-LNGTDFRGRTIIVREGVDRTE 283
+ +D A+ +NG + + V + + +
Sbjct: 196 YETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKD 229
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 124 (48.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D S L +MF PFG V +V+V R+ T +G G++TM + + A AI +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 162 DGSDVGGREMRVRF 175
+G +G R ++V F
Sbjct: 367 NGYRLGDRVLQVSF 380
Score = 119 (46.9 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 34/126 (26%), Positives = 63/126 (50%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + R LYV LP++ EL ++F +G +++ + + TG+SRG G++
Sbjct: 141 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIR 200
Query: 148 MGSINSAKNAIIALDGSD--VGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
A+ AI L+G + V+F+ + + +T +A++S +Y SP++
Sbjct: 201 FDKRIEAEEAIKGLNGQKPPAATEPITVKFANNPSQKTN--QAILSQ-----LYHSPNRR 253
Query: 206 YVGNLS 211
Y L+
Sbjct: 254 YPAPLA 259
Score = 102 (41.0 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 31/128 (24%), Positives = 60/128 (46%)
Query: 80 GGNEVDDDSS-VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
G N +++ SS ++ + L V LP+S EL +F G + S ++ R+ TG
Sbjct: 46 GSNAINNCSSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITG 105
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
S G G++ A+ AI L+G + + ++V ++ ++ R+A +S K
Sbjct: 106 QSLGYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMT 165
Query: 199 YESPHKLY 206
+ +L+
Sbjct: 166 QKELEQLF 173
Score = 78 (32.5 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++V NL+ L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG R + V ++T
Sbjct: 367 NGYRLGDRVLQVSFKTNKT 385
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 155 (59.6 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 50/189 (26%), Positives = 89/189 (47%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L S L F +G V+ + ++ T SRG G++ N + +
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 161 ----LDGSDVGGREMRVRFSIDMNSRTRN----AEALISPPKKIFVYESPHKLYVGNLSW 212
LDG ++ + R +RT++ +++ + KKIFV PH N
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKTRTKDGWKGSKSDSNKSKKIFVGGIPH-----NCGE 126
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT 272
A +LR++F RFG V +++D + Q R FGFI+F ++ D A++++ D G+
Sbjct: 127 A----ELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNMHFHDIMGKK 182
Query: 273 IIVREGVDR 281
+ V++ R
Sbjct: 183 VEVKKAEPR 191
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 154 (59.3 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 48/210 (22%), Positives = 100/210 (47%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 85 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQET 203
Query: 190 ISPPKKI--FVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + V +S K +Y G ++ + + +R F FG ++ RV + KG
Sbjct: 204 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---- 258
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F+ FS+ ++ A +S+NGT G +
Sbjct: 259 -YSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 48/194 (24%), Positives = 93/194 (47%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETG-ISRGCGYLTMGSINS-- 153
+P LYV NL R +L++F G S + ++ P++ ++ G+ + ++
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 154 -----------AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
A A+ A++G + G+E++V ++ +S+ ++ S
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SN 112
Query: 203 H-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDA 259
H ++VG+LS + ED+++ F FG + ARV+ D ++ +GF+SF + DAE +A
Sbjct: 113 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE-NA 171
Query: 260 ALSLNGTDFRGRTI 273
+ + G GR I
Sbjct: 172 IVHMGGQWLGGRQI 185
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 154 (59.3 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 48/210 (22%), Positives = 100/210 (47%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 85 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQET 203
Query: 190 ISPPKKI--FVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + V +S K +Y G ++ + + +R F FG ++ RV + KG
Sbjct: 204 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---- 258
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F+ FS+ ++ A +S+NGT G +
Sbjct: 259 -YSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
Score = 120 (47.3 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 48/194 (24%), Positives = 93/194 (47%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETG-ISRGCGYLTMGSINS-- 153
+P LYV NL R +L++F G S + ++ P++ ++ G+ + ++
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 154 -----------AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
A A+ A++G + G+E++V ++ +S+ ++ S
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SN 112
Query: 203 H-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDA 259
H ++VG+LS + ED+++ F FG + ARV+ D ++ +GF+SF + DAE +A
Sbjct: 113 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE-NA 171
Query: 260 ALSLNGTDFRGRTI 273
+ + G GR I
Sbjct: 172 IVHMGGQWLGGRQI 185
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 152 (58.6 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 49/167 (29%), Positives = 88/167 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y+ NL RS D + + F FG +L+ V+++ E G SRG G++ S +A+ AI
Sbjct: 114 KIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEK 172
Query: 161 LDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++G +++ V +F + R R E K +++ LYV NLS + L
Sbjct: 173 VNGMLCNNQKVHVVKF---IPRRDREQE-------KATHFKN---LYVKNLSEEFTEQHL 219
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA-LSLNG 265
R F +G + S +++ D +G++ R FGF+++ + AA + L+G
Sbjct: 220 REMFEPYGRITSHKLMLDEEGRSRR-FGFVAYENPQSALAAVIGLHG 265
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 154 (59.3 bits), Expect = 9.5e-09, P = 9.5e-09
Identities = 52/192 (27%), Positives = 94/192 (48%)
Query: 79 VGGNEVDDDSSVE-EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
VG + ++ + E R RA ++V N+ D +L E+F +G SV+V R+ +
Sbjct: 177 VGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-S 235
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPK 194
G S+G G++ + +A+ A++ L G + G+ + R + I+ + R + +
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKE 295
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K P +Y+ NL + E L+ F FG++ A+V+ + GQ + FG + FSS
Sbjct: 296 KSRPPGVP--IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQG-KGFGVVCFSSF 351
Query: 255 AERDAALS-LNG 265
E A+ +NG
Sbjct: 352 EEATKAVDEMNG 363
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 52/197 (26%), Positives = 93/197 (47%)
Query: 92 EPRSRARPC---ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+P R R +++ NL +S D L +F FG +LS +V + + G S+G Y+
Sbjct: 95 QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHF 152
Query: 149 GSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S+ +A AI ++G + R++ V RF R AE + + F ++V
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFP---EERAAEVR-TRDRATFT-----NVFV 203
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
N+ + E L+ F +G S +V+ D G++ + FGF+ + + +A + A L L+G
Sbjct: 204 KNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKS-KGFGFVRYETHEAAQKAVLDLHGK 262
Query: 267 DFRGRTIIVREGVDRTE 283
G+ + V + E
Sbjct: 263 SIDGKVLYVGRAQKKIE 279
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 159 (61.0 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 56/195 (28%), Positives = 95/195 (48%)
Query: 74 NGKDNVGGNEVDDDSSV--EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
N +N N ++++SV +E ++V +LP F+ +L +F +G VLS +V
Sbjct: 81 NNNNNNNNNNNNNNNSVNNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKV 140
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+P+ G S G G++ S + AI LDG +++ R S N T L S
Sbjct: 141 MIDPK-GNSYGYGFVRFSSPQESAAAIEELDGYQYQNKKLLCRLS---NLYTN----LNS 192
Query: 192 PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
Y S + L++ L + V + LR F FG ++ +V+ D GQ+ + GF+ F
Sbjct: 193 K------YPS-NNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQS-KFAGFVRF 244
Query: 252 SSDAERDAAL-SLNG 265
SS+ + A+ ++NG
Sbjct: 245 SSELDASKAIDAMNG 259
Score = 116 (45.9 bits), Expect = 0.00087, P = 0.00087
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 194 KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
K++ + ++V +L + EDL N F ++G V+S++V+ D KG + +GF+ FSS
Sbjct: 100 KELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYG-YGFVRFSS 158
Query: 254 DAERDAALS-LNGTDFRGRTIIVR 276
E AA+ L+G ++ + ++ R
Sbjct: 159 PQESAAAIEELDGYQYQNKKLLCR 182
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 26/75 (34%), Positives = 49/75 (65%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F +EL++MF PFG V+S +V + T S+ G+++ + SA+ AI
Sbjct: 337 CNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQ 396
Query: 160 ALDGSDVGGREMRVR 174
A++G +G + ++V+
Sbjct: 397 AMNGFQIGMKRLKVQ 411
Score = 107 (42.7 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E RS +L+V L + ++ ++F PFGT+ + R P+ G S+GC ++ GS
Sbjct: 47 ESRSEHLDRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPD-GASKGCAFVKFGSQ 105
Query: 152 NSAKNAIIALDGS 164
A++AI L GS
Sbjct: 106 QEAQSAITNLHGS 118
Score = 92 (37.4 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
L++ +L +L F FG V+S++V DR ++ FGF+SF + A AA+ ++
Sbjct: 339 LFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAAIQAM 398
Query: 264 NG 265
NG
Sbjct: 399 NG 400
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 57/205 (27%), Positives = 94/205 (45%)
Query: 86 DDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
D S V EP P E ++ L +L E F G V V + + + S
Sbjct: 134 DKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+G Y+ ++S AI L G V G + V+ S + A A+ + +K
Sbjct: 194 KGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQAS---QAEKNRAAAMANNLQKGSA-- 247
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDA 259
P +LYVG+L + + + LR F FG + S +++ D + ++ +GFI+FS S+ + A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
LNG + GR + V +RT++
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDA 332
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 57/205 (27%), Positives = 94/205 (45%)
Query: 86 DDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
D S V EP P E ++ L +L E F G V V + + + S
Sbjct: 134 DKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+G Y+ ++S AI L G V G + V+ S + A A+ + +K
Sbjct: 194 KGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQAS---QAEKNRAAAMANNLQKGSA-- 247
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDA 259
P +LYVG+L + + + LR F FG + S +++ D + ++ +GFI+FS S+ + A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
LNG + GR + V +RT++
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDA 332
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 57/205 (27%), Positives = 94/205 (45%)
Query: 86 DDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
D S V EP P E ++ L +L E F G V V + + + S
Sbjct: 134 DKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+G Y+ ++S AI L G V G + V+ S + A A+ + +K
Sbjct: 194 KGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQAS---QAEKNRAAAMANNLQKGSA-- 247
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDA 259
P +LYVG+L + + + LR F FG + S +++ D + ++ +GFI+FS S+ + A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
LNG + GR + V +RT++
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDA 332
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 154 (59.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 48/210 (22%), Positives = 100/210 (47%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 85 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQET 203
Query: 190 ISPPKKI--FVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + V +S K +Y G ++ + + +R F FG ++ RV + KG
Sbjct: 204 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---- 258
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F+ FS+ ++ A +S+NGT G +
Sbjct: 259 -YSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
Score = 120 (47.3 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 48/194 (24%), Positives = 93/194 (47%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETG-ISRGCGYLTMGSINS-- 153
+P LYV NL R +L++F G S + ++ P++ ++ G+ + ++
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 154 -----------AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
A A+ A++G + G+E++V ++ +S+ ++ S
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SN 112
Query: 203 H-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDA 259
H ++VG+LS + ED+++ F FG + ARV+ D ++ +GF+SF + DAE +A
Sbjct: 113 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE-NA 171
Query: 260 ALSLNGTDFRGRTI 273
+ + G GR I
Sbjct: 172 IVHMGGQWLGGRQI 185
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 154 (59.3 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 48/210 (22%), Positives = 100/210 (47%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 85 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQET 203
Query: 190 ISPPKKI--FVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + V +S K +Y G ++ + + +R F FG ++ RV + KG
Sbjct: 204 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---- 258
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F+ FS+ ++ A +S+NGT G +
Sbjct: 259 -YSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
Score = 120 (47.3 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 48/194 (24%), Positives = 93/194 (47%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETG-ISRGCGYLTMGSINS-- 153
+P LYV NL R +L++F G S + ++ P++ ++ G+ + ++
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 154 -----------AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
A A+ A++G + G+E++V ++ +S+ ++ S
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SN 112
Query: 203 H-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDA 259
H ++VG+LS + ED+++ F FG + ARV+ D ++ +GF+SF + DAE +A
Sbjct: 113 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE-NA 171
Query: 260 ALSLNGTDFRGRTI 273
+ + G GR I
Sbjct: 172 IVHMGGQWLGGRQI 185
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 57/205 (27%), Positives = 94/205 (45%)
Query: 86 DDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
D S V EP P E ++ L +L E F G V V + + + S
Sbjct: 134 DKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+G Y+ ++S AI L G V G + V+ S + A A+ + +K
Sbjct: 194 KGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQAS---QAEKNRAAAMANNLQKGSA-- 247
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDA 259
P +LYVG+L + + + LR F FG + S +++ D + ++ +GFI+FS S+ + A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
LNG + GR + V +RT++
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDA 332
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 57/205 (27%), Positives = 94/205 (45%)
Query: 86 DDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
D S V EP P E ++ L +L E F G V V + + + S
Sbjct: 134 DKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+G Y+ ++S AI L G V G + V+ S + A A+ + +K
Sbjct: 194 KGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQAS---QAEKNRAAAMANNLQKGSA-- 247
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDA 259
P +LYVG+L + + + LR F FG + S +++ D + ++ +GFI+FS S+ + A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
LNG + GR + V +RT++
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDA 332
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 57/205 (27%), Positives = 94/205 (45%)
Query: 86 DDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
D S V EP P E ++ L +L E F G V V + + + S
Sbjct: 134 DKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+G Y+ ++S AI L G V G + V+ S + A A+ + +K
Sbjct: 194 KGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQAS---QAEKNRAAAMANNLQKGSA-- 247
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDA 259
P +LYVG+L + + + LR F FG + S +++ D + ++ +GFI+FS S+ + A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
LNG + GR + V +RT++
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDA 332
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 57/205 (27%), Positives = 94/205 (45%)
Query: 86 DDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
D S V EP P E ++ L +L E F G V V + + + S
Sbjct: 134 DKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+G Y+ ++S AI L G V G + V+ S + A A+ + +K
Sbjct: 194 KGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQAS---QAEKNRAAAMANNLQKGSA-- 247
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDA 259
P +LYVG+L + + + LR F FG + S +++ D + ++ +GFI+FS S+ + A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
LNG + GR + V +RT++
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDA 332
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 156 (60.0 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 57/205 (27%), Positives = 94/205 (45%)
Query: 86 DDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
D S V EP P E ++ L +L E F G V V + + + S
Sbjct: 134 DKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRS 193
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+G Y+ ++S AI L G V G + V+ S + A A+ + +K
Sbjct: 194 KGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQAS---QAEKNRAAAMANNLQKGSA-- 247
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDA 259
P +LYVG+L + + + LR F FG + S +++ D + ++ +GFI+FS S+ + A
Sbjct: 248 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKA 307
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
LNG + GR + V +RT++
Sbjct: 308 LEQLNGFELAGRPMKVGHVTERTDA 332
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 145 (56.1 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 46/179 (25%), Positives = 89/179 (49%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NL R + +L++F G + ++ + G C ++ A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDPYC-FVEFHEHRHAAAAL 63
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEA--LISPPKKIFVYESPHKLYVGNLSWAVKP 216
A++G + G+E++V ++ +S+ ++ + ++S + + ++VG+LS +
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRS----QDHFHVFVGDLSPEITT 119
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTI 273
ED++ F FG + ARV+ D ++ +GF+SF + DAE +A + G GR I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE-NAIQQMGGQWLGGRQI 177
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 157 (60.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 44/165 (26%), Positives = 80/165 (48%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N ++ L ++F FG + S EV G S+G G++ + A+ A+ AL
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS----PPKKIFVYESPHKLYVGNLSWAVKPE 217
S + G ++++ R+AE +++ Y+ + LYV NL V +
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVN-LYVKNLDETVDDD 331
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L+ F +G + SA+V+ D G++ + FGF+ F E +A++
Sbjct: 332 GLKKQFESYGNITSAKVMTDENGRS-KGFGFVCFEKPEEATSAVT 375
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 44/175 (25%), Positives = 81/175 (46%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S L E F G VLS+ V R+ T +S G Y+ A+ A+ +
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ MR+ +S + R + A +++ NL + + + +
Sbjct: 94 NFEALHGKPMRIMWS-QRDPAMRRSGA--------------GNIFIKNLDKVIDNKSIYD 138
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G ++ +GF+ F ++ A ++A +NG G+ + V
Sbjct: 139 TFSLFGNILSCKVAIDEDG-FSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
K+++G L+W ++LR +FG++GTV +++ D +R FGF+SF + D +
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219
Query: 263 ---LNGTDFRGRTIIVREGVDRT 282
L+G + I R+ D+T
Sbjct: 220 QHILDGKVIDPKRAIPRDEQDKT 242
Score = 110 (43.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/110 (23%), Positives = 55/110 (50%)
Query: 176 SIDMNSRTRNA-EALISPPKKIFVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVS 231
S+D +T++ + + PK+ + K ++VG + V+P++ F ++GT++
Sbjct: 212 SVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIID 271
Query: 232 ARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDR 281
A+++ D+ +R FGF+++ S D DF+ R I ++ R
Sbjct: 272 AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321
Score = 91 (37.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 88 SSVEEPRSRA----RPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISR 141
+ +E RS+A C++++ L ++D +E L E F +GTV +++ ++P TG SR
Sbjct: 143 TQTKEERSKADLSKESCKMFIGGL--NWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 200
Query: 142 GCGYLTMGSINSAKNAI 158
G G+L+ +S +
Sbjct: 201 GFGFLSFEKPSSVDEVV 217
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 33/86 (38%), Positives = 46/86 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
ELYV ++ +L +F GTV SV + +PETG S+GCGY+ M + AK AI
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNA 186
LDG+ + R + V + TR A
Sbjct: 64 LDGALLRNRVITVSVARPQKQATRPA 89
Score = 99 (39.9 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALS 262
+LYVG++S+ +DLR F GTV S ++ D + ++ G++ ++ E ++A +
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 263 LNGTDFRGRTIIV 275
L+G R R I V
Sbjct: 64 LDGALLRNRVITV 76
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 33/86 (38%), Positives = 46/86 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
ELYV ++ +L +F GTV SV + +PETG S+GCGY+ M + AK AI
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNA 186
LDG+ + R + V + TR A
Sbjct: 64 LDGALLRNRVITVSVARPQKQATRPA 89
Score = 99 (39.9 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALS 262
+LYVG++S+ +DLR F GTV S ++ D + ++ G++ ++ E ++A +
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 263 LNGTDFRGRTIIV 275
L+G R R I V
Sbjct: 64 LDGALLRNRVITV 76
>FB|FBgn0037602 [details] [associations]
symbol:CG8021 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
Length = 91
Score = 134 (52.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 197 FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
FV S +KL+VGNL W + ++LR +F ++G V +A V+ DR+ ++ +GF+ FS +
Sbjct: 5 FV-RSSYKLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFS---Q 60
Query: 257 RDA--ALSLNGTDFR-GRTIIVREGVDRTES 284
RDA + S T F GR + V+ + +S
Sbjct: 61 RDAFNSASNQNTHFLDGRVLTVQRANESPQS 91
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 155 (59.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 63/204 (30%), Positives = 98/204 (48%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDIS--ELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SV E + R +YV NL S+D+ L + + G V+ +V P G+S+GCG +
Sbjct: 102 SVRESSQQDR--RVYVGNL--SYDVKWHHLKDFMRQAGDVIFADVLLLPN-GMSKGCGIV 156
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA---LISPPKKIFV-YES- 201
+ A+NA+ L ++ R + VR + R + P + F Y
Sbjct: 157 EYATREQAQNAVNTLSNQNLMNRLVYVREDREPEPRFSGGPSRGDFGGPGRGGFGGYGGG 216
Query: 202 P----HKLYVGNLSWAVKPEDLRNHF---GRFGTVVSARVLHDRKGQTTRVFGFISFSS- 253
P +LYV NL + V +DL++ F + GTV+ A V D G+ + G ++F S
Sbjct: 217 PGGGGRQLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRP-KGSGIVAFESP 275
Query: 254 DAERDAALSLNGTDFRGRTIIVRE 277
D R+A NG D++GRT+ VRE
Sbjct: 276 DDARNAIQQFNGYDWQGRTLEVRE 299
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 53/199 (26%), Positives = 97/199 (48%)
Query: 79 VGGNEVDDDSSVE-EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
VG + ++ + E R RA ++V N D +L E+F +G SV+V R+ +
Sbjct: 177 VGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDA-S 235
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPK 194
G S+G G++ + +A+ A++ L G + G+ + R + I+ + R + +
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKE 295
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K P +Y+ NL + E L+ F FG++ A+V+ + GQ + FG + FSS
Sbjct: 296 KSRPPGVP--IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQG-KGFGVVCFSSF 351
Query: 255 AERDAALSLNGTDFRGRTI 273
DA +++ + GRT+
Sbjct: 352 --EDATKAVD--EMNGRTV 366
Score = 151 (58.2 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 52/197 (26%), Positives = 92/197 (46%)
Query: 92 EPRSRARPC---ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+P R R +++ NL +S D L +F FG +LS +V + + G S+G Y+
Sbjct: 95 QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYVHF 152
Query: 149 GSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S+ +A AI ++G + R++ V RF R AE + + F ++V
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFP---EERAAEVR-TRDRATFT-----NVFV 203
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
N + E L+ F +G S +V+ D G++ + FGF+ + + +A + A L L+G
Sbjct: 204 KNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKS-KGFGFVRYETHEAAQKAVLDLHGK 262
Query: 267 DFRGRTIIVREGVDRTE 283
G+ + V + E
Sbjct: 263 SINGKVLYVGRAQKKIE 279
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 153 (58.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 51/208 (24%), Positives = 92/208 (44%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+N + D SS R++ ++V +L ++ F PFG + V
Sbjct: 74 VNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 133
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRNAEA 188
++ TG S+G G+++ + A+NAI + G +GGR++R ++ T +
Sbjct: 134 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 193
Query: 189 LISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
++ SP +Y G ++ + + +R F FG ++ RV D KG +
Sbjct: 194 KQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-KG-----Y 247
Query: 247 GFISFSS-DAERDAALSLNGTDFRGRTI 273
FI FSS ++ A +S+NGT G +
Sbjct: 248 SFIRFSSHESAAHAIVSVNGTTIEGHVV 275
Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 46/179 (25%), Positives = 89/179 (49%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NL R + +L++F G + ++ + G C ++ A A+
Sbjct: 2 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDPYC-FVEFHEHRHAAAAL 59
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEA--LISPPKKIFVYESPHKLYVGNLSWAVKP 216
A++G + G+E++V ++ +S+ ++ + ++S + + ++VG+LS +
Sbjct: 60 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRS----QDHFHVFVGDLSPEITT 115
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTI 273
ED++ F FG + ARV+ D ++ +GF+SF + DAE +A + G GR I
Sbjct: 116 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE-NAIQQMGGQWLGGRQI 173
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 153 (58.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 52/220 (23%), Positives = 99/220 (45%)
Query: 73 INGKDNVGGNEVDDD---SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + S + + + ++V +L ++ F PFG +
Sbjct: 67 MNGR-KIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDA 125
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRNA 186
V ++ TG S+G G+++ + A+NAI + G +GGR++R ++ T
Sbjct: 126 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYET 185
Query: 187 EALISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
++ SP +Y G ++ + + +R F FG ++ RV D KG
Sbjct: 186 NTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD-KG---- 240
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVDRTE 283
+ F+ F+S ++ A +S+NGT G + G + T+
Sbjct: 241 -YSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGKETTD 279
Score = 124 (48.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 46/179 (25%), Positives = 86/179 (48%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+P LYV NL R + ++++F G S ++ + G C ++ A +
Sbjct: 6 QPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDT-AGNDPYC-FVEFFEHRHAAAS 63
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKP 216
+ A++G + G+E++V ++ +S+ ++ S H ++VG+LS +
Sbjct: 64 LAAMNGRKIMGKEVKVNWATSPSSQKKDT--------------SNHFHVFVGDLSPEITT 109
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTI 273
+D+R F FG + ARV+ D ++ +GF+SF + DAE +A + G GR I
Sbjct: 110 DDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE-NAIQQMGGQWLGGRQI 167
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 121 (47.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+G + + S V P + + +++ NL + D L +MF PFG V +V+V R+ T
Sbjct: 223 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 282
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+G G++TM + A AI +L+G +G + ++V F + + +
Sbjct: 283 KCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + LY+ LPR+ ++ +MF FG +++ V + TG+SRG ++
Sbjct: 94 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153
Query: 148 MGSINSAKNAIIALDG-SDVGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
+ A+ AI + +G G E + V+F+ + N + +N AL+S +Y SP +
Sbjct: 154 FDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPN-QNKNV-ALLSQ-----LYHSPARR 206
Query: 206 YVG 208
+ G
Sbjct: 207 FGG 209
Score = 95 (38.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LY+ L + +D+ + F RFG ++++RVL D+ +R FI F +E + A+ S
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 264 NG 265
NG
Sbjct: 168 NG 169
Score = 92 (37.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 27/106 (25%), Positives = 49/106 (46%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+D E+ R L V LP++ EL +F G V S ++ R+ G S G G+
Sbjct: 6 EDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ + A+ AI L+G + + ++V ++ + ++A IS
Sbjct: 66 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYIS 111
Score = 74 (31.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+++ NL L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NG 265
NG
Sbjct: 306 NG 307
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 121 (47.7 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+G + + S V P + + +++ NL + D L +MF PFG V +V+V R+ T
Sbjct: 223 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 282
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+G G++TM + A AI +L+G +G + ++V F + + +
Sbjct: 283 KCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + LY+ LPR+ ++ +MF FG +++ V + TG+SRG ++
Sbjct: 94 SYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153
Query: 148 MGSINSAKNAIIALDG-SDVGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
+ A+ AI + +G G E + V+F+ + N + +N AL+S +Y SP +
Sbjct: 154 FDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPN-QNKNV-ALLSQ-----LYHSPARR 206
Query: 206 YVG 208
+ G
Sbjct: 207 FGG 209
Score = 93 (37.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LY+ L + +D+ + F RFG ++++RVL D+ +R FI F +E + A+ S
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 264 NG 265
NG
Sbjct: 168 NG 169
Score = 92 (37.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 27/106 (25%), Positives = 49/106 (46%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+D E+ R L V LP++ EL +F G V S ++ R+ G S G G+
Sbjct: 6 EDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ + A+ AI L+G + + ++V ++ + ++A IS
Sbjct: 66 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYIS 111
Score = 74 (31.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+++ NL L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NG 265
NG
Sbjct: 306 NG 307
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 48/210 (22%), Positives = 100/210 (47%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 68 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
Query: 190 ISPPKKI--FVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + V +S K +Y G ++ + + +R F FG ++ RV + KG
Sbjct: 187 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---- 241
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F+ FS+ ++ A +S+NGT G +
Sbjct: 242 -YSFVRFSTHESAAHAIVSVNGTTIEGHVV 270
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 50/181 (27%), Positives = 90/181 (49%)
Query: 98 RPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+P LYV NL R D++E +L++F G S ++ T C ++ A
Sbjct: 7 QPRTLYVGNLSR--DVTEVLILQLFSQIGPCKSCKMITE-HTSNDPYC-FVEFYEHRDAA 62
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAV 214
A+ A++G + G+E++V ++ +S+ ++ S H ++VG+LS +
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SNHFHVFVGDLSPEI 108
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRT 272
ED+++ F FG + ARV+ D ++ +GF+SF + DAE +A + + G GR
Sbjct: 109 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE-NAIVHMGGQWLGGRQ 167
Query: 273 I 273
I
Sbjct: 168 I 168
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 48/210 (22%), Positives = 100/210 (47%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 68 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
Query: 190 ISPPKKI--FVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + V +S K +Y G ++ + + +R F FG ++ RV + KG
Sbjct: 187 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---- 241
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F+ FS+ ++ A +S+NGT G +
Sbjct: 242 -YSFVRFSTHESAAHAIVSVNGTTIEGHVV 270
Score = 136 (52.9 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 50/181 (27%), Positives = 90/181 (49%)
Query: 98 RPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+P LYV NL R D++E +L++F G S ++ T C ++ A
Sbjct: 7 QPRTLYVGNLSR--DVTEVLILQLFSQIGPCKSCKMITE-HTSNDPYC-FVEFYEHRDAA 62
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAV 214
A+ A++G + G+E++V ++ +S+ ++ S H ++VG+LS +
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SNHFHVFVGDLSPEI 108
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRT 272
ED+++ F FG + ARV+ D ++ +GF+SF + DAE +A + + G GR
Sbjct: 109 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE-NAIVHMGGQWLGGRQ 167
Query: 273 I 273
I
Sbjct: 168 I 168
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 121 (47.7 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+G + + S V P + + +++ NL + D L +MF PFG V +V+V R+ T
Sbjct: 231 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 290
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+G G++TM + A AI +L+G +G + ++V F + + +
Sbjct: 291 KCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 334
Score = 118 (46.6 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + LY+ LPR+ ++ +MF FG +++ V + TG+SRG ++
Sbjct: 102 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 161
Query: 148 MGSINSAKNAIIALDG-SDVGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
+ A+ AI + +G G E + V+F+ + N + +N AL+S +Y SP +
Sbjct: 162 FDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPN-QNKNV-ALLSQ-----LYHSPARR 214
Query: 206 YVG 208
+ G
Sbjct: 215 FGG 217
Score = 95 (38.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LY+ L + +D+ + F RFG ++++RVL D+ +R FI F +E + A+ S
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Query: 264 NG 265
NG
Sbjct: 176 NG 177
Score = 92 (37.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 27/106 (25%), Positives = 49/106 (46%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+D E+ R L V LP++ EL +F G V S ++ R+ G S G G+
Sbjct: 14 EDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 73
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ + A+ AI L+G + + ++V ++ + ++A IS
Sbjct: 74 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYIS 119
Score = 74 (31.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+++ NL L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 264 NG 265
NG
Sbjct: 314 NG 315
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 52/192 (27%), Positives = 93/192 (48%)
Query: 79 VGGNEVDDDSSVE-EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
VG + ++ + E R +A ++V N D +L E+F +G SV+V R+ +
Sbjct: 177 VGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SS 235
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPK 194
G S+G G++ + +A+ A++ L G + G+ + R + I+ + R + +
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKE 295
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K P +Y+ NL + E L+ F FG++ A+V+ + GQ + FG I FSS
Sbjct: 296 KSRPPGVP--IYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE-VGQG-KGFGVICFSSF 351
Query: 255 AERDAALS-LNG 265
E A+ +NG
Sbjct: 352 EEATKAVDEMNG 363
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 52/197 (26%), Positives = 93/197 (47%)
Query: 92 EPRSRARPC---ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+P R R +++ NL +S D L +F FG++LS +V + + G S+G Y+
Sbjct: 95 QPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCD-DNG-SKGYAYVHF 152
Query: 149 GSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S+ +A AI ++G + R++ V RF R AE + K F ++V
Sbjct: 153 DSLAAANRAIWHMNGVRLNNRQVYVGRFKFP---EERAAEVR-TRDKATFT-----NVFV 203
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
N + + L+ F +G S +V+ D G++ + FGF+ + + +A + A L L+G
Sbjct: 204 KNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKS-KGFGFVRYETHEAAQKAVLDLHGK 262
Query: 267 DFRGRTIIVREGVDRTE 283
G+ + V + E
Sbjct: 263 SIDGKVLYVGRAQKKIE 279
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 48/210 (22%), Positives = 100/210 (47%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 84 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 142
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 143 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 202
Query: 190 ISPPKKI--FVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + V +S K +Y G ++ + + +R F FG ++ RV + KG
Sbjct: 203 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---- 257
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F+ FS+ ++ A +S+NGT G +
Sbjct: 258 -YSFVRFSTHESAAHAIVSVNGTTIEGHVV 286
Score = 120 (47.3 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 48/194 (24%), Positives = 93/194 (47%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETG-ISRGCGYLTMGSINS-- 153
+P LYV NL R +L++F G S + ++ P++ ++ G+ + ++
Sbjct: 6 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 65
Query: 154 -----------AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
A A+ A++G + G+E++V ++ +S+ ++ S
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SN 111
Query: 203 H-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDA 259
H ++VG+LS + ED+++ F FG + ARV+ D ++ +GF+SF + DAE +A
Sbjct: 112 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE-NA 170
Query: 260 ALSLNGTDFRGRTI 273
+ + G GR I
Sbjct: 171 IVHMGGQWLGGRQI 184
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 49/210 (23%), Positives = 97/210 (46%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 86 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDA 144
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 145 RVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQDN 204
Query: 190 ISPPKK---IFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + + SP +Y G + + +R F FG ++ RV + KG
Sbjct: 205 SAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPE-KG---- 259
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ FI FSS ++ A +S+NGT G +
Sbjct: 260 -YSFIRFSSHESAAHAIVSVNGTTIEGHVV 288
Score = 106 (42.4 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 35/123 (28%), Positives = 64/123 (52%)
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSW 212
A A+ A++G + G+E++V ++ +S+ ++ S H ++VG+LS
Sbjct: 79 AAAALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SNHFHVFVGDLSP 124
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRG 270
+ +D+R F FG + ARV+ D ++ +GF+SF + DAE +A + + G G
Sbjct: 125 EITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAE-NAIVHMGGQWLGG 183
Query: 271 RTI 273
R I
Sbjct: 184 RQI 186
Score = 44 (20.5 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+ P LYV NL R + +L++F G S ++
Sbjct: 5 SHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKM 39
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 48/210 (22%), Positives = 100/210 (47%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 85 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 203
Query: 190 ISPPKKI--FVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + V +S K +Y G ++ + + +R F FG ++ RV + KG
Sbjct: 204 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---- 258
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F+ FS+ ++ A +S+NGT G +
Sbjct: 259 -YSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
Score = 120 (47.3 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 48/194 (24%), Positives = 93/194 (47%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETG-ISRGCGYLTMGSINS-- 153
+P LYV NL R +L++F G S + ++ P++ ++ G+ + ++
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 154 -----------AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
A A+ A++G + G+E++V ++ +S+ ++ S
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SN 112
Query: 203 H-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDA 259
H ++VG+LS + ED+++ F FG + ARV+ D ++ +GF+SF + DAE +A
Sbjct: 113 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE-NA 171
Query: 260 ALSLNGTDFRGRTI 273
+ + G GR I
Sbjct: 172 IVHMGGQWLGGRQI 185
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 48/210 (22%), Positives = 100/210 (47%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 85 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 203
Query: 190 ISPPKKI--FVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + V +S K +Y G ++ + + +R F FG ++ RV + KG
Sbjct: 204 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---- 258
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F+ FS+ ++ A +S+NGT G +
Sbjct: 259 -YSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
Score = 120 (47.3 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 48/194 (24%), Positives = 93/194 (47%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETG-ISRGCGYLTMGSINS-- 153
+P LYV NL R +L++F G S + ++ P++ ++ G+ + ++
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 154 -----------AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
A A+ A++G + G+E++V ++ +S+ ++ S
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SN 112
Query: 203 H-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDA 259
H ++VG+LS + ED+++ F FG + ARV+ D ++ +GF+SF + DAE +A
Sbjct: 113 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE-NA 171
Query: 260 ALSLNGTDFRGRTI 273
+ + G GR I
Sbjct: 172 IVHMGGQWLGGRQI 185
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 152 (58.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 48/210 (22%), Positives = 100/210 (47%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 85 MNGR-KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V ++ TG S+G G+++ + A+NAI+ + G +GGR++R ++ ++ +
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 203
Query: 190 ISPPKKI--FVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + V +S K +Y G ++ + + +R F FG ++ RV + KG
Sbjct: 204 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---- 258
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F+ FS+ ++ A +S+NGT G +
Sbjct: 259 -YSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
Score = 120 (47.3 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 48/194 (24%), Positives = 93/194 (47%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETG-ISRGCGYLTMGSINS-- 153
+P LYV NL R +L++F G S + ++ P++ ++ G+ + ++
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 154 -----------AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
A A+ A++G + G+E++V ++ +S+ ++ S
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT--------------SN 112
Query: 203 H-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDA 259
H ++VG+LS + ED+++ F FG + ARV+ D ++ +GF+SF + DAE +A
Sbjct: 113 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE-NA 171
Query: 260 ALSLNGTDFRGRTI 273
+ + G GR I
Sbjct: 172 IVHMGGQWLGGRQI 185
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 152 (58.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 46/185 (24%), Positives = 81/185 (43%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L S L F +G V+ + ++ T SRG G++ N + +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 161 ----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
LDG ++ + R RTR E P+ +K++VG +
Sbjct: 61 RPHTLDGRNIDPKPCTPRGM--QPERTRPKEGWQKGPRSD--NSKSNKIFVGGIPHNCGE 116
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+LR +F +FG V +++D + Q R FGFI+F + D A++++ D G+ + V+
Sbjct: 117 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 176
Query: 277 EGVDR 281
R
Sbjct: 177 RAEPR 181
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 152 (58.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 46/185 (24%), Positives = 81/185 (43%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L S L F +G V+ + ++ T SRG G++ N + +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 161 ----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
LDG ++ + R RTR E P+ +K++VG +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGM--QPERTRPKEGWQKGPRSD--NSKSNKIFVGGIPHNCGE 126
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+LR +F +FG V +++D + Q R FGFI+F + D A++++ D G+ + V+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 277 EGVDR 281
R
Sbjct: 187 RAEPR 191
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 152 (58.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 46/185 (24%), Positives = 81/185 (43%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L S L F +G V+ + ++ T SRG G++ N + +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 161 ----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
LDG ++ + R RTR E P+ +K++VG +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGM--QPERTRPKEGWQKGPRSDS--SKSNKIFVGGIPHNCGE 126
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+LR +F +FG V +++D + Q R FGFI+F + D A++++ D G+ + V+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 277 EGVDR 281
R
Sbjct: 187 RAEPR 191
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 152 (58.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 46/185 (24%), Positives = 81/185 (43%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L S L F +G V+ + ++ T SRG G++ N + +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 161 ----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
LDG ++ + R RTR E P+ +K++VG +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGM--QPERTRPKEGWQKGPRSDS--SKSNKIFVGGIPHNCGE 126
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+LR +F +FG V +++D + Q R FGFI+F + D A++++ D G+ + V+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 277 EGVDR 281
R
Sbjct: 187 RAEPR 191
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 132 (51.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL++G LS+ + L F + G VV A+++ DR ++ FGF++F+S D + A +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 263 LNGTDFRGRTIIV 275
NG GRTI V
Sbjct: 95 FNGQQLNGRTIFV 107
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 152 (58.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 46/185 (24%), Positives = 81/185 (43%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L S L F +G V+ + ++ T SRG G++ N + +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 161 ----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
LDG ++ + R RTR E P+ +K++VG +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGM--QPERTRPKEGWQKGPRSD--NSKSNKIFVGGIPHNCGE 126
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+LR +F +FG V +++D + Q R FGFI+F + D A++++ D G+ + V+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 277 EGVDR 281
R
Sbjct: 187 RAEPR 191
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 152 (58.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 46/185 (24%), Positives = 81/185 (43%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L S L F +G V+ + ++ T SRG G++ N + +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 161 ----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
LDG ++ + R RTR E P+ +K++VG +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGM--QPERTRPKEGWQKGPRSD--NSKSNKIFVGGIPHNCGE 126
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+LR +F +FG V +++D + Q R FGFI+F + D A++++ D G+ + V+
Sbjct: 127 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 186
Query: 277 EGVDR 281
R
Sbjct: 187 RAEPR 191
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 152 (58.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 47/185 (25%), Positives = 82/185 (44%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII- 159
+L+V + D +L E F +G V V R+ TG RG G++ S S + ++
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIF-SDPSVLDRVLQ 65
Query: 160 ---ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
++D +V + R ++ RT N S Y K++VG L +
Sbjct: 66 EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGD--AYNKTKKIFVGGLPPTLTD 123
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
E+ R +F +G V +++D+ R FGF+SF S+ D+ L D G+ + V+
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183
Query: 277 EGVDR 281
+ +
Sbjct: 184 RALPK 188
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 151 (58.2 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 45/185 (24%), Positives = 80/185 (43%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L S L F +G V+ + ++ T SRG G++ N + +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 161 ----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
LDG ++ + R SR R P + +K++VG +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTE---NSRSNKIFVGGIPHNCGE 127
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+L+ +F RFG V +++D + Q R FGFI+F + D A++++ D G+ + V+
Sbjct: 128 TELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 187
Query: 277 EGVDR 281
R
Sbjct: 188 RAEPR 192
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 122 (48.0 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+G + + S V P + + +++ NL + D L +MF PFG V +V+V R+ T
Sbjct: 223 MGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 282
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+G G++TM + A AI +L+G +G + ++V F + + +
Sbjct: 283 KCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + LY+ LPR+ ++ +MF FG +++ V + TG+SRG ++
Sbjct: 94 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153
Query: 148 MGSINSAKNAIIALDG-SDVGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
+ A+ AI + +G G E + V+F+ + N + +N AL+S +Y SP +
Sbjct: 154 FDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPN-QNKNM-ALLSQ-----LYHSPARR 206
Query: 206 YVG 208
+ G
Sbjct: 207 FGG 209
Score = 95 (38.5 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LY+ L + +D+ + F RFG ++++RVL D+ +R FI F +E + A+ S
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 264 NG 265
NG
Sbjct: 168 NG 169
Score = 93 (37.8 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 27/106 (25%), Positives = 49/106 (46%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+D E+ R L V LP++ EL +F G V S ++ R+ G S G G+
Sbjct: 6 EDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ + A+ AI L+G + + ++V ++ + ++A IS
Sbjct: 66 VNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYIS 111
Score = 74 (31.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+++ NL L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NG 265
NG
Sbjct: 306 NG 307
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 122 (48.0 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+G + + S V P + + +++ NL + D L +MF PFG V +V+V R+ T
Sbjct: 223 MGVDHMSGISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 282
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+G G++TM + A AI +L+G +G + ++V F + + +
Sbjct: 283 KCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + LY+ LPR+ ++ +MF FG +++ V + TG+SRG ++
Sbjct: 94 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 153
Query: 148 MGSINSAKNAIIALDG-SDVGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
+ A+ AI + +G G E + V+F+ + N + +N AL+S +Y SP +
Sbjct: 154 FDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPN-QNKNM-ALLSQ-----LYHSPARR 206
Query: 206 YVG 208
+ G
Sbjct: 207 FGG 209
Score = 95 (38.5 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LY+ L + +D+ + F RFG ++++RVL D+ +R FI F +E + A+ S
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 264 NG 265
NG
Sbjct: 168 NG 169
Score = 93 (37.8 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 27/106 (25%), Positives = 49/106 (46%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+D E+ R L V LP++ EL +F G V S ++ R+ G S G G+
Sbjct: 6 EDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 65
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ + A+ AI L+G + + ++V ++ + ++A IS
Sbjct: 66 VNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYIS 111
Score = 74 (31.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+++ NL L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 264 NG 265
NG
Sbjct: 306 NG 307
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 121 (47.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+G + + S V P + + +++ NL + D L +MF PFG V +V+V R+ T
Sbjct: 250 MGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 309
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+G G++TM + A AI +L+G +G + ++V F + + +
Sbjct: 310 KCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 353
Score = 118 (46.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 35/123 (28%), Positives = 62/123 (50%)
Query: 89 SVEEPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S P S + LY+ LPR+ ++ +MF FG +++ V + TG+SRG ++
Sbjct: 121 SYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIR 180
Query: 148 MGSINSAKNAIIALDG-SDVGGRE-MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
+ A+ AI + +G G E + V+F+ + N + +N AL+S +Y SP +
Sbjct: 181 FDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPN-QNKNV-ALLSQ-----LYHSPARR 233
Query: 206 YVG 208
+ G
Sbjct: 234 FGG 236
Score = 95 (38.5 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LY+ L + +D+ + F RFG ++++RVL D+ +R FI F +E + A+ S
Sbjct: 135 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 194
Query: 264 NG 265
NG
Sbjct: 195 NG 196
Score = 92 (37.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 27/106 (25%), Positives = 49/106 (46%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+D E+ R L V LP++ EL +F G V S ++ R+ G S G G+
Sbjct: 33 EDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGF 92
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ + A+ AI L+G + + ++V ++ + ++A IS
Sbjct: 93 VNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYIS 138
Score = 74 (31.1 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+++ NL L FG FG V + +V+ D + FGF++ ++ E A+ SL
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 264 NG 265
NG
Sbjct: 333 NG 334
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 151 (58.2 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 51/210 (24%), Positives = 96/210 (45%)
Query: 73 INGKDNVGGNEVDDDSSV---EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+NG+ + G EV + + + + + ++V +L ++ F PFG +
Sbjct: 66 MNGR-KIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRNA 186
V ++ TG S+G G+++ + A+NAI + G +GGR++R ++ T +
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 184
Query: 187 EALISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
++ SP +Y G ++ + + +R F FG ++ RV D KG
Sbjct: 185 NTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-KG---- 239
Query: 245 VFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ FI FSS ++ A +S+NGT G +
Sbjct: 240 -YSFIRFSSHESAAHAIVSVNGTTIEGHVV 268
Score = 129 (50.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 47/178 (26%), Positives = 85/178 (47%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NL R + +L++F G + ++ + G C ++ A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDPYC-FVEFHEHRHAAAAL 63
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPE 217
A++G + G+E++V ++ +S+ ++ S H ++VG+LS + E
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDT--------------SNHFHVFVGDLSPEITTE 109
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTI 273
D++ F FG + ARV+ D ++ +GF+SF + DAE +A + G GR I
Sbjct: 110 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE-NAIQQMGGQWLGGRQI 166
>UNIPROTKB|F1M0Q5 [details] [associations]
symbol:F1M0Q5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00559641
ProteinModelPortal:F1M0Q5 Ensembl:ENSRNOT00000036216 Uniprot:F1M0Q5
Length = 165
Score = 131 (51.2 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 31/96 (32%), Positives = 50/96 (52%)
Query: 189 LISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
+I PK+ E HKL +G L + E LRNHF ++GT V+ D + +R GF
Sbjct: 22 VIESPKEP---EQLHKLCIGGLIFKTTHESLRNHFEKWGTFTDCVVMRDPNTKRSRSSGF 78
Query: 249 ISFSSDAERDAALSLNGTDFRGRTIIVREGVDRTES 284
+++++ E DAA++ GR + + V R +S
Sbjct: 79 VTYNTVEEVDAAMNARPQKMDGRLVKPKRAVSREDS 114
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 123 (48.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E K++VG +S +D + F +FG V+ A ++ D+ R FGF++F S+A +A
Sbjct: 191 EKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEA 250
Query: 260 ALSLNGTDFRGRTIIVREGVDR 281
ALS + G+TI V++ R
Sbjct: 251 ALS-RPLEILGKTIEVKKAQPR 271
Score = 73 (30.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 25/95 (26%), Positives = 38/95 (40%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRA--RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+G D+ N+ EP+ ++++ L L E F FG V V
Sbjct: 82 SGPDSGYNNQTTGPVGEPEPQGTGIKEDGKMFIGGLNWETTDQSLKEYFSQFGEVQECTV 141
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIA---LDG 163
R+ TG SRG G+LT + ++ LDG
Sbjct: 142 MRDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLDG 176
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 133 (51.9 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 27/83 (32%), Positives = 51/83 (61%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+ R C +++ +LP+ F SE+L+MF PFG V+S +V + T S+ G+++ +
Sbjct: 359 QQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNP 418
Query: 152 NSAKNAIIALDGSDVGGREMRVR 174
SA+ AI A++G +G + ++V+
Sbjct: 419 ASAQAAIQAMNGFQIGMKRLKVQ 441
Score = 99 (39.9 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L + +++ +MF+PFG++ V R P+ G S+GC ++ S A+ AI A
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISA 153
Query: 161 LDGS 164
L GS
Sbjct: 154 LHGS 157
Score = 97 (39.2 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 193 PKKIFVYESPH--KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
P+++ E P +++ +L ++ F FG V+SA+V DR ++ FGF+S
Sbjct: 355 PQQLQQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVS 414
Query: 251 FSSDAERDAAL-SLNG 265
F + A AA+ ++NG
Sbjct: 415 FDNPASAQAAIQAMNG 430
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 150 (57.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 53/186 (28%), Positives = 80/186 (43%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS---INSAKNA 157
+L++ + D + L E F FG VL V V R TG RG G++ I+
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 158 IIALDGSDVG-GREM-RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+D DV R M R S S T NA + K++VG L A+
Sbjct: 67 KHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANV----RTKKIFVGGLPPALT 122
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
++ R +F +G V A ++ D+ Q R FGF+SF S+ D L D G+ + V
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEV 182
Query: 276 REGVDR 281
+ + +
Sbjct: 183 KRALPK 188
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 150 (57.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 46/185 (24%), Positives = 80/185 (43%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L S L F +G V+ + ++ T SRG G++ N + +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 161 ----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
LDG ++ + R RTR E P +K++VG +
Sbjct: 71 RPHTLDGRNIDPKPCTPRGM--QPERTRPKEGWKGPRSDS---SKSNKIFVGGIPHNCGE 125
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+LR +F +FG V +++D + Q R FGFI+F + D A++++ D G+ + V+
Sbjct: 126 TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVK 185
Query: 277 EGVDR 281
R
Sbjct: 186 RAEPR 190
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 152 (58.6 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 56/216 (25%), Positives = 95/216 (43%)
Query: 84 VD-DDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
VD + SS ++P++ + P L+ NL + + +++ FK G V+ V S N +
Sbjct: 275 VDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDD 334
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G RG G++ S A+ A+ G + GRE +R I R +P F
Sbjct: 335 GSFRGFGHVEFASSEEAQKAL-EFHGRPLLGRE--IRLDIAQERGERGERPAFTPQSGNF 391
Query: 198 VYESP----HKLYVGNLSWAVKPEDLRN----HFGRFGTVVSARVLHDRKGQTTRVFGFI 249
K++V ++ +D++N HF G + + V DR ++ ++
Sbjct: 392 RSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYL 451
Query: 250 SFSSDAERDAALSLNGTDFRGRT-IIVREGVDRTES 284
FS E+ AL LNG+D G ++V E R +S
Sbjct: 452 EFSEGKEK--ALELNGSDMGGGFYLVVDEPRPRGDS 485
>CGD|CAL0000019 [details] [associations]
symbol:orf19.1646 species:5476 "Candida albicans" [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0000019 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 EMBL:AACQ01000014
EMBL:AACQ01000013 GO:GO:0006364 RefSeq:XP_721604.1
RefSeq:XP_721723.1 ProteinModelPortal:Q5AJS6 STRING:Q5AJS6
GeneID:3636592 GeneID:3636694 KEGG:cal:CaO19.1646
KEGG:cal:CaO19.9215 eggNOG:NOG323716 KO:K14787 Uniprot:Q5AJS6
Length = 841
Score = 154 (59.3 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 56/211 (26%), Positives = 103/211 (48%)
Query: 73 INGKDNVGGNEVDDD-SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPF-GTVLS-V 129
I+ + +G ++ DD+ SV+ P ++V NL + + L ++FKP G V++ V
Sbjct: 594 ISANEILGESKEDDEIESVQGPT-----VAVFVKNLNFATTVQALSDLFKPLPGFVVATV 648
Query: 130 EVSRNPETG---ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA 186
+ +P+ +S G G++ + A AI LDG + G +++++ S + T +A
Sbjct: 649 KTKPDPKNSGKTLSMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGT-SA 707
Query: 187 EALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
++ K K+ + NL + +DL FG FG + S RV + Q+ R F
Sbjct: 708 SSIKKSGKS-------SKIIIKNLPFEATRKDLLELFGAFGQLKSVRV-PKKFDQSARGF 759
Query: 247 GFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F+ F+ E + A+S L G GR ++++
Sbjct: 760 AFVEFNLMKEAETAMSQLEGVHLLGRRLVMQ 790
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 149 (57.5 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 49/171 (28%), Positives = 84/171 (49%)
Query: 115 ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174
+L E F G V V + + + S+G Y+ ++S AI L G V G + V+
Sbjct: 11 DLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQ 69
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
S + A A+ + +K P +LYVG+L + + + LR F FG + S ++
Sbjct: 70 AS---QAEKNRAAAMANNLQKGSA--GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQL 124
Query: 235 LHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGVDRTES 284
+ D + ++ +GFI+FS S+ + A LNG + GR + V +RT++
Sbjct: 125 MMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDA 175
Score = 134 (52.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 94 RSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+ A P LYV +L F+I+E L +F+PFG + S+++ + ETG S+G G++T
Sbjct: 87 KGSAGPMRLYVGSL--HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDS 144
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
AK A+ L+G ++ GR M+V
Sbjct: 145 ECAKKALEQLNGFELAGRPMKV 166
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 149 (57.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 49/208 (23%), Positives = 92/208 (44%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+N + D SS R++ ++V +L ++ F PFG + V
Sbjct: 78 VNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 137
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRNAEA 188
++ TG S+G G+++ + A+NAI + G +GGR++R ++ T +
Sbjct: 138 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 197
Query: 189 LISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
++ SP +Y G ++ + + +R F FG ++ RV D KG +
Sbjct: 198 KQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-KG-----Y 251
Query: 247 GFISFSS-DAERDAALSLNGTDFRGRTI 273
F+ F+S ++ A +S+NGT G +
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVV 279
Score = 144 (55.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 46/179 (25%), Positives = 89/179 (49%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NL R + +L++F G + ++ + G C ++ A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDPYC-FVEFYEHRHAAAAL 63
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEA--LISPPKKIFVYESPHKLYVGNLSWAVKP 216
A++G + G+E++V ++ +S+ ++ + ++S + + ++VG+LS +
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRS----QDHFHVFVGDLSPEITT 119
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTI 273
ED++ F FG + ARV+ D ++ +GF+SF + DAE +A + G GR I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE-NAIQQMGGQWLGGRQI 177
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 152 (58.6 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 57/222 (25%), Positives = 95/222 (42%)
Query: 74 NGKDNVGGNEV----DDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLS 128
+G V G+E D++ EE + P C L++ NL + L E F G V S
Sbjct: 362 DGDTTVKGSEETSAQDEEEDEEEDEEESIPGCTLFIKNLNFTTTEGTLKETFSKVGAVKS 421
Query: 129 VEVSRNPE---TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN 185
+S+ + T +S G G++ SA+ A+ L G V G ++ V+ S R
Sbjct: 422 CTISKKKDKAGTLLSMGFGFVEYKKPESAQKALRRLQGCIVDGHKLEVKIS----ERAVR 477
Query: 186 AEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT-R 244
S K+ + K+ V N+ + ++R F FG + + R+ G + R
Sbjct: 478 PAVKSSRKKQTVKKQKTSKILVRNIPFQATVREIRELFSTFGELKTVRLPKKMAGTGSHR 537
Query: 245 VFGFISF--SSDAERDAALSLNGTDFRGRTIIVREGVDRTES 284
FGF+ F DA++ + T GR +++ E D E+
Sbjct: 538 GFGFVDFLTKQDAKKAFNALCHSTHLYGRRLVL-EWADTEET 578
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 149 (57.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 49/208 (23%), Positives = 92/208 (44%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+N + D SS R++ ++V +L ++ F PFG + V
Sbjct: 78 VNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 137
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRNAEA 188
++ TG S+G G+++ + A+NAI + G +GGR++R ++ T +
Sbjct: 138 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 197
Query: 189 LISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
++ SP +Y G ++ + + +R F FG ++ RV D KG +
Sbjct: 198 KQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-KG-----Y 251
Query: 247 GFISFSS-DAERDAALSLNGTDFRGRTI 273
F+ F+S ++ A +S+NGT G +
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVV 279
Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 46/179 (25%), Positives = 89/179 (49%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NL R + +L++F G + ++ + G C ++ A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDPYC-FVEFHEHRHAAAAL 63
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEA--LISPPKKIFVYESPHKLYVGNLSWAVKP 216
A++G + G+E++V ++ +S+ ++ + ++S + + ++VG+LS +
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRS----QDHFHVFVGDLSPEITT 119
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTI 273
ED++ F FG + ARV+ D ++ +GF+SF + DAE +A + G GR I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE-NAIQQMGGQWLGGRQI 177
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 153 (58.9 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 52/182 (28%), Positives = 80/182 (43%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA---I 158
L+V LP S +L E+F G V V + RG GY+T + + A I
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 159 IALDGS--DVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAV 214
+G DV + ++R + NAE+ PK K V + +L + NLS+
Sbjct: 66 TTFEGCKIDVTVAKKKLRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKC 125
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 273
+DL+ F +GTV+ + G+ R F F+ F + E AL N + +GRT+
Sbjct: 126 SEDDLKAVFTHYGTVLEVNIPKKPDGKM-RGFAFVQFKNLLEAGKALKGANMKEIKGRTV 184
Query: 274 IV 275
V
Sbjct: 185 AV 186
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 149 (57.5 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 49/208 (23%), Positives = 92/208 (44%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+N + D SS R++ ++V +L ++ F PFG + V
Sbjct: 78 VNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 137
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRNAEA 188
++ TG S+G G+++ + A+NAI + G +GGR++R ++ T +
Sbjct: 138 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 197
Query: 189 LISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
++ SP +Y G ++ + + +R F FG ++ RV D KG +
Sbjct: 198 KQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-KG-----Y 251
Query: 247 GFISFSS-DAERDAALSLNGTDFRGRTI 273
F+ F+S ++ A +S+NGT G +
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVV 279
Score = 145 (56.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 46/179 (25%), Positives = 89/179 (49%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NL R + +L++F G + ++ + G C ++ A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDPYC-FVEFHEHRHAAAAL 63
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEA--LISPPKKIFVYESPHKLYVGNLSWAVKP 216
A++G + G+E++V ++ +S+ ++ + ++S + + ++VG+LS +
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRS----QDHFHVFVGDLSPEITT 119
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTI 273
ED++ F FG + ARV+ D ++ +GF+SF + DAE +A + G GR I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE-NAIQQMGGQWLGGRQI 177
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 152 (58.6 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 46/195 (23%), Positives = 99/195 (50%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ V+ ++ A C +YV ++ SF++ E + F PFG + S+ +S +P T +G +
Sbjct: 118 TQVQRQQALALMCRVYVGSI--SFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAF 175
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
+ A+ A+ ++G+ +GGR ++V S A+ +I ++ +S +++
Sbjct: 176 VEYEIPEGAQLALEQMNGALMGGRNIKV----GRPSNMPQAQQVIDEVQE--EAKSFNRI 229
Query: 206 YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN 264
YV ++ + ED+++ F FG ++ ++ T + +GFI +++ D A+ S+N
Sbjct: 230 YVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMN 289
Query: 265 GTDFRGRTIIVREGV 279
D G+ + V +
Sbjct: 290 LFDLGGQLLRVGRSI 304
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 149 (57.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 49/208 (23%), Positives = 92/208 (44%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+N + D SS R++ ++V +L ++ F PFG + V
Sbjct: 78 VNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 137
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRNAEA 188
++ TG S+G G+++ + A+NAI + G +GGR++R ++ T +
Sbjct: 138 VKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNT 197
Query: 189 LISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
++ SP +Y G ++ + + +R F FG ++ RV D KG +
Sbjct: 198 KQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-KG-----Y 251
Query: 247 GFISFSS-DAERDAALSLNGTDFRGRTI 273
F+ F+S ++ A +S+NGT G +
Sbjct: 252 SFVRFNSHESAAHAIVSVNGTTIEGHVV 279
Score = 144 (55.7 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 46/179 (25%), Positives = 89/179 (49%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NL R + +L++F G + ++ + G C ++ A A+
Sbjct: 6 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-AGNDPYC-FVEFYEHRHAAAAL 63
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEA--LISPPKKIFVYESPHKLYVGNLSWAVKP 216
A++G + G+E++V ++ +S+ ++ + ++S + + ++VG+LS +
Sbjct: 64 AAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRS----QDHFHVFVGDLSPEITT 119
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTI 273
ED++ F FG + ARV+ D ++ +GF+SF + DAE +A + G GR I
Sbjct: 120 EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE-NAIQQMGGQWLGGRQI 177
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 129 (50.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 26/83 (31%), Positives = 48/83 (57%)
Query: 201 SPH-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
SP KL++G LSW+V + L++ F FG V R+ +D+ +R FGF+ F+ + + +
Sbjct: 38 SPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALS 97
Query: 260 AL-SLNGTDFRGRTIIVREGVDR 281
A +++G GR + + ++R
Sbjct: 98 AKDAMDGKGLLGRPLRISFALER 120
Score = 111 (44.1 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 95 SRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
S A P +L++ L S D L + F FG V V ++ + +G SRG G++
Sbjct: 35 SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94
Query: 154 AKNAIIALDGSDVGGREMRVRFSID 178
A +A A+DG + GR +R+ F+++
Sbjct: 95 ALSAKDAMDGKGLLGRPLRISFALE 119
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 129 (50.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L ++F FG LSV+V + E+G S+G G+++ A+ A+ ++G ++ G+++ V
Sbjct: 5 LKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 63
Query: 176 SIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSAR 233
+ R + K +I Y+ + LYV NL + E LR F FGT+ SA+
Sbjct: 64 AQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERLRKEFSPFGTITSAK 122
Score = 103 (41.3 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTII 274
E L++ FG+FG +S +V+ D G++ + FGF+SF DA++ A +NG + G+ I
Sbjct: 3 ERLKDLFGKFGPALSVKVMTDESGKS-KGFGFVSFERHEDAQK-AVDEMNGKELNGKQIY 60
Query: 275 VREGVDRTE 283
V + E
Sbjct: 61 VGRAQKKVE 69
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 129 (50.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P K+++G LSW P+ LR++F +FG + V+ D + +R FGF++F+ A D L
Sbjct: 20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 129 (50.5 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
+ P KL++G L+ + L FG++G +V ++ DR+ +R F F++F S A+ +D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 259 AALSLNGTDFRGRTIIVRE 277
AA +NG G+ I V +
Sbjct: 65 AARDMNGKSLDGKAIKVEQ 83
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 142 (55.0 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 47/168 (27%), Positives = 80/168 (47%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V +PR D +L +F+ FG + + V ++P TG+ +GC +LT + +SA A A
Sbjct: 46 KLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTA 105
Query: 161 L-DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L + + G ++ +S +R KL+VG L+ ED+
Sbjct: 106 LHEQKTLPGMARPIQVK-PADSESRGGR--------------DRKLFVGMLNKQQSEEDV 150
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
F FG + VL G +++ F+ FSS E AA+ +L+G+
Sbjct: 151 LRLFQPFGVIDECTVLRGPDG-SSKGCAFVKFSSHTEAQAAIHALHGS 197
Score = 130 (50.8 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 26/84 (30%), Positives = 51/84 (60%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
++ R C L++ +LP+ F +EL +MF PFG ++S +V + T S+ G+++ +
Sbjct: 391 QQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDN 450
Query: 151 INSAKNAIIALDGSDVGGREMRVR 174
SA+ AI A++G +G + ++V+
Sbjct: 451 PASAQAAIQAMNGFQIGMKRLKVQ 474
Score = 102 (41.0 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 31/104 (29%), Positives = 51/104 (49%)
Query: 92 EPRSRA-RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+ SR R +L+V L + ++L +F+PFG + V R P+ G S+GC ++ S
Sbjct: 125 DSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSS 183
Query: 151 INSAKNAIIALDGSDV---GGREMRVRFSIDMNSRT-RNAEALI 190
A+ AI AL GS + V+F+ RT R + ++
Sbjct: 184 HTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMV 227
Score = 93 (37.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 200 ESPH--KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
E P L++ +L +L F FG ++S++V DR ++ FGF+SF + A
Sbjct: 395 EGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASA 454
Query: 258 DAAL-SLNG 265
AA+ ++NG
Sbjct: 455 QAAIQAMNG 463
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 148 (57.2 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
I + + + + + P V P K+++G LSW PE LR++FGR+G + A V+
Sbjct: 3 IKIEQQQQQQQVELGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMK 62
Query: 237 DRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
D + +R FGF++FS D L+ + G+ +
Sbjct: 63 DPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKV 99
Score = 137 (53.3 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 38/175 (21%), Positives = 82/175 (46%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++++ L L + F +G + V ++P T SRG G++T NS + +
Sbjct: 28 PGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSV-DKV 86
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+ ++ G+++ + + + + +++ KKIFV G LS ED
Sbjct: 87 LTQGTHELDGKKVDPKVAFPRRAHPK----MVTRTKKIFV---------GGLSAPTTLED 133
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
++++F +FG + A ++ D++ R FGF++F S+ D ++ + + +
Sbjct: 134 VKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMV 188
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 149 (57.5 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 46/184 (25%), Positives = 84/184 (45%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V L L F FG ++ V +N E+G SRG G++T + N ++
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNV-NHVLQ 66
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ GR + + N RT + PKK +K+++G L V DLR
Sbjct: 67 NGPHTLDGRTIDPK---PCNPRT------LQKPKK----GGGYKVFLGGLPSNVTETDLR 113
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280
F R+G V +++D++ + +R FGF+SF ++ + + + G+ + +++
Sbjct: 114 TFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP 173
Query: 281 RTES 284
R S
Sbjct: 174 RDGS 177
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VG LS+ + L F ++G + V+ DR+ Q +R FGF++F + D +DA ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 263 LNGTDFRGRTIIV 275
+NG GR I V
Sbjct: 67 MNGKSVDGRQIRV 79
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 101 ELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V L SFD +E L ++F +G + V V ++ ET SRG G++T +I+ AK+A+
Sbjct: 7 KLFVGGL--SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 159 IALDGSDVGGREMRV 173
+A++G V GR++RV
Sbjct: 65 MAMNGKSVDGRQIRV 79
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VG LS+ + L F ++G + V+ DR+ Q +R FGF++F + D +DA ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 263 LNGTDFRGRTIIV 275
+NG GR I V
Sbjct: 67 MNGKSVDGRQIRV 79
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 101 ELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V L SFD +E L ++F +G + V V ++ ET SRG G++T +I+ AK+A+
Sbjct: 7 KLFVGGL--SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 159 IALDGSDVGGREMRV 173
+A++G V GR++RV
Sbjct: 65 MAMNGKSVDGRQIRV 79
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VG LS+ + L F ++G + V+ DR+ Q +R FGF++F + D +DA ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 263 LNGTDFRGRTIIV 275
+NG GR I V
Sbjct: 67 MNGKSVDGRQIRV 79
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 101 ELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V L SFD +E L ++F +G + V V ++ ET SRG G++T +I+ AK+A+
Sbjct: 7 KLFVGGL--SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 159 IALDGSDVGGREMRV 173
+A++G V GR++RV
Sbjct: 65 MAMNGKSVDGRQIRV 79
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VG LS+ + L F ++G + V+ DR+ Q +R FGF++F + D +DA ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 263 LNGTDFRGRTIIV 275
+NG GR I V
Sbjct: 67 MNGKSVDGRQIRV 79
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 101 ELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V L SFD +E L ++F +G + V V ++ ET SRG G++T +I+ AK+A+
Sbjct: 7 KLFVGGL--SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 159 IALDGSDVGGREMRV 173
+A++G V GR++RV
Sbjct: 65 MAMNGKSVDGRQIRV 79
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VG LS+ + L F ++G + V+ DR+ Q +R FGF++F + D +DA ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 263 LNGTDFRGRTIIV 275
+NG GR I V
Sbjct: 67 MNGKSVDGRQIRV 79
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 101 ELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V L SFD +E L ++F +G + V V ++ ET SRG G++T +I+ AK+A+
Sbjct: 7 KLFVGGL--SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 159 IALDGSDVGGREMRV 173
+A++G V GR++RV
Sbjct: 65 MAMNGKSVDGRQIRV 79
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VG LS+ + L F ++G + V+ DR+ Q +R FGF++F + D +DA ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 263 LNGTDFRGRTIIV 275
+NG GR I V
Sbjct: 67 MNGKSVDGRQIRV 79
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 101 ELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V L SFD +E L ++F +G + V V ++ ET SRG G++T +I+ AK+A+
Sbjct: 7 KLFVGGL--SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 159 IALDGSDVGGREMRV 173
+A++G V GR++RV
Sbjct: 65 MAMNGKSVDGRQIRV 79
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VG LS+ + L F ++G + V+ DR+ Q +R FGF++F + D +DA ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 263 LNGTDFRGRTIIV 275
+NG GR I V
Sbjct: 67 MNGKSVDGRQIRV 79
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 101 ELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V L SFD +E L ++F +G + V V ++ ET SRG G++T +I+ AK+A+
Sbjct: 7 KLFVGGL--SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 159 IALDGSDVGGREMRV 173
+A++G V GR++RV
Sbjct: 65 MAMNGKSVDGRQIRV 79
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VG LS+ + L F ++G + V+ DR+ Q +R FGF++F + D +DA ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 263 LNGTDFRGRTIIV 275
+NG GR I V
Sbjct: 67 MNGKSVDGRQIRV 79
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 101 ELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V L SFD +E L ++F +G + V V ++ ET SRG G++T +I+ AK+A+
Sbjct: 7 KLFVGGL--SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 159 IALDGSDVGGREMRV 173
+A++G V GR++RV
Sbjct: 65 MAMNGKSVDGRQIRV 79
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 128 (50.1 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VG LS+ + L F ++G + V+ DR+ Q +R FGF++F + D +DA ++
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 263 LNGTDFRGRTIIV 275
+NG GR I V
Sbjct: 67 MNGKSVDGRQIRV 79
Score = 127 (49.8 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 101 ELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V L SFD +E L ++F +G + V V ++ ET SRG G++T +I+ AK+A+
Sbjct: 7 KLFVGGL--SFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 159 IALDGSDVGGREMRV 173
+A++G V GR++RV
Sbjct: 65 MAMNGKSVDGRQIRV 79
WARNING: HSPs involving 626 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 284 261 0.00090 114 3 11 22 0.47 33
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 876
No. of states in DFA: 600 (64 KB)
Total size of DFA: 183 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.99u 0.16s 21.15t Elapsed: 00:00:01
Total cpu time: 21.03u 0.17s 21.20t Elapsed: 00:00:01
Start: Thu May 9 19:11:00 2013 End: Thu May 9 19:11:01 2013
WARNINGS ISSUED: 2