BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023297
(284 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449445537|ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 286
Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 157/271 (57%), Positives = 199/271 (73%), Gaps = 10/271 (3%)
Query: 18 ITPPATPKRFGFTSLPTL---INFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEIN 74
I +P F L + +F Y KL S +H F + V+D E+ + E+ I
Sbjct: 22 ILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSL-RHNHGERFPVLFTVLDNESALTEEAI- 79
Query: 75 GKDNVGGNEVDDDS-SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
V G+ + S S +E + ARPCELYVCNLPRS DI+EL+EMFKP+GTVL+ EVSR
Sbjct: 80 ----VEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSR 135
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
NPETGIS+GCGY+TMGSINSAK +I ALDGSDVGGREMRVRF++DMNS+ RN L S P
Sbjct: 136 NPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSP 195
Query: 194 KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
KK +YESP+K+YVGNLSW VKP DLRN F RFGTVVSA+VL+DR+ +RV+GF+SFSS
Sbjct: 196 KKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSS 255
Query: 254 DAERDAALSLNGTDFRGRTIIVREGVDRTES 284
AERDA++SL+GT++ R ++VREG++R+ES
Sbjct: 256 AAERDASISLDGTEYNNRKLVVREGLERSES 286
>gi|449518978|ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 284
Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 157/271 (57%), Positives = 199/271 (73%), Gaps = 10/271 (3%)
Query: 18 ITPPATPKRFGFTSLPTL---INFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEIN 74
I +P F L + +F Y KL S +H F + V+D E+ + E+ I
Sbjct: 20 ILKHKSPSYCTFKQLHSFHSSFHFDYTKLVSL-RHNHGERFPVLFTVLDNESALTEEAI- 77
Query: 75 GKDNVGGNEVDDDS-SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
V G+ + S S +E + ARPCELYVCNLPRS DI+EL+EMFKP+GTVL+ EVSR
Sbjct: 78 ----VEGDVKSEGSLSNQEVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSR 133
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
NPETGIS+GCGY+TMGSINSAK +I ALDGSDVGGREMRVRF++DMNS+ RN L S P
Sbjct: 134 NPETGISKGCGYVTMGSINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSP 193
Query: 194 KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
KK +YESP+K+YVGNLSW VKP DLRN F RFGTVVSA+VL+DR+ +RV+GF+SFSS
Sbjct: 194 KKNIIYESPYKVYVGNLSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSS 253
Query: 254 DAERDAALSLNGTDFRGRTIIVREGVDRTES 284
AERDA++SL+GT++ R ++VREG++R+ES
Sbjct: 254 AAERDASISLDGTEYNNRKLVVREGLERSES 284
>gi|224128049|ref|XP_002320231.1| predicted protein [Populus trichocarpa]
gi|222861004|gb|EEE98546.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 304 bits (778), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/274 (58%), Positives = 195/274 (71%), Gaps = 14/274 (5%)
Query: 16 TKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRS-----VLAVVDEEAVVVE 70
TK PP +S I Q+PKL S S+ RS VLAVVD+E V+ E
Sbjct: 21 TKTRPPPAAAA-SISSFCPPIQLQHPKLCCSLSLSNTLCLRSRKFLAVLAVVDKETVITE 79
Query: 71 DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130
EIN E+DD E + +A+PCELYVCNLPRS DI++L+EMFKPFG+VLSVE
Sbjct: 80 -EINHVRE----EIDD---FELKKKQAKPCELYVCNLPRSSDIADLVEMFKPFGSVLSVE 131
Query: 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 190
VSRNPETG+SRGCGY+TMGS+ SA+NA+ ALDGSDVGGREMRVR+S++++S RN EAL
Sbjct: 132 VSRNPETGVSRGCGYITMGSVESARNAVSALDGSDVGGREMRVRYSVEISSGRRNPEALN 191
Query: 191 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
S P K YESPHKLYVGNL W+ KP++LRN F FG VVSARVL DRKG R + F+S
Sbjct: 192 SAPTKHLFYESPHKLYVGNLPWSTKPDELRNLFNHFGIVVSARVLSDRKGGKNRTYAFLS 251
Query: 251 FSSDAERDAALSLNGTDFRGRTIIVREGVDRTES 284
F SDAERDAALS+NGT+F R ++V+ GV++ S
Sbjct: 252 FLSDAERDAALSMNGTEFYDRMLVVKRGVEKRPS 285
>gi|255548039|ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223545556|gb|EEF47060.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 281
Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/282 (56%), Positives = 200/282 (70%), Gaps = 27/282 (9%)
Query: 21 PATPKRFGFTSLPTLINFQYPKLSSCWSRSH--------------PAG----FRSVLAVV 62
P+ P F +LP+L +PK S C+ +SH PA ++LA+V
Sbjct: 8 PSLPSSFRTPTLPSL---PFPKFS-CFLQSHSREIPLLSSSSSLWPANKSKRVFAILALV 63
Query: 63 DEEAVVVEDEINGKDNVGGNEVDDDSSV-EEPRSRARPCELYVCNLPRSFDISELLEMFK 121
+EE+VV E+ D ++ + + + + RPCELYVCNLPRS DI+EL+E+FK
Sbjct: 64 NEESVVAEE----VDREENENESEEDELGRQLKKQPRPCELYVCNLPRSCDIAELVELFK 119
Query: 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181
P+GTV+SVEVSRNPETGISRGCG++TMGSINSAKNAI ALDGSD+GGREMRV+FS+DMNS
Sbjct: 120 PYGTVISVEVSRNPETGISRGCGFVTMGSINSAKNAIAALDGSDIGGREMRVKFSVDMNS 179
Query: 182 RTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
RN E L S P K YESP K+YVGNL+W VKPE+LR+ F +FGTVVSARVL+DRK
Sbjct: 180 GRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVKPEELRDQFSKFGTVVSARVLYDRKAG 239
Query: 242 TTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
R +GF+SFSS ERDAALS NG DFRGR ++VR+GV+R +
Sbjct: 240 KNRAYGFLSFSSTKERDAALSFNGKDFRGRILVVRKGVERED 281
>gi|15223293|ref|NP_171616.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|21554268|gb|AAM63343.1| ribonucleoprotein, putative [Arabidopsis thaliana]
gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|332189110|gb|AEE27231.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 293
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 137/205 (66%), Positives = 166/205 (80%), Gaps = 3/205 (1%)
Query: 83 EVDDDSSVE--EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
E + DS V EP + RPCELYVCN+PRS+DI++LL+MF+PFGTV+SVEVSRNP+TG S
Sbjct: 89 EPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGES 148
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-RNAEALISPPKKIFVY 199
RG GY+TMGSINSAK AI +LDG++VGGREMRVR+S+DMN T RN E L S PKKI +Y
Sbjct: 149 RGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMY 208
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
ES HK+YVGNL W +P+ LRNHF +FGT+VS RVLHDRK RVF F+SF+S ERDA
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
ALS NGT + GR IIVREG++++ES
Sbjct: 269 ALSFNGTQYEGRRIIVREGIEKSES 293
>gi|297843010|ref|XP_002889386.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335228|gb|EFH65645.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 298
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 134/208 (64%), Positives = 167/208 (80%), Gaps = 3/208 (1%)
Query: 80 GGNEVDDDSSVEE--PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
G E + DS V E P + RPCELYVCN+PRS+DI++LL+MF+PFGTV+SVEVSRNP+T
Sbjct: 91 GEGETNGDSVVSEAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQT 150
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN-SRTRNAEALISPPKKI 196
G SRG GY+TMGSINSAK AI +LDG++VGGREMRVR+S+DMN RN E L S PKKI
Sbjct: 151 GESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGARRNPEVLNSTPKKI 210
Query: 197 FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
+YES +K+YVGNL W +P+ LR+HF +FGT+VS RVLHDRK RVF F+SF++ E
Sbjct: 211 LMYESQYKVYVGNLPWFTQPDGLRDHFSKFGTIVSTRVLHDRKTGKNRVFAFLSFTNSEE 270
Query: 257 RDAALSLNGTDFRGRTIIVREGVDRTES 284
RDAALSLNGT + GR IIVREG++++E+
Sbjct: 271 RDAALSLNGTQYEGRRIIVREGIEKSEA 298
>gi|79316226|ref|NP_001030925.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189111|gb|AEE27232.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 294
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/206 (66%), Positives = 166/206 (80%), Gaps = 4/206 (1%)
Query: 83 EVDDDSSVE--EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV-SRNPETGI 139
E + DS V EP + RPCELYVCN+PRS+DI++LL+MF+PFGTV+SVEV SRNP+TG
Sbjct: 89 EPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGE 148
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFV 198
SRG GY+TMGSINSAK AI +LDG++VGGREMRVR+S+DMN TR N E L S PKKI +
Sbjct: 149 SRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILM 208
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
YES HK+YVGNL W +P+ LRNHF +FGT+VS RVLHDRK RVF F+SF+S ERD
Sbjct: 209 YESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERD 268
Query: 259 AALSLNGTDFRGRTIIVREGVDRTES 284
AALS NGT + GR IIVREG++++ES
Sbjct: 269 AALSFNGTQYEGRRIIVREGIEKSES 294
>gi|388515725|gb|AFK45924.1| unknown [Lotus japonicus]
Length = 290
Score = 276 bits (705), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 145/259 (55%), Positives = 186/259 (71%), Gaps = 15/259 (5%)
Query: 37 NFQYPKLSSCWSRS----HPAGFRSVL--AVVDEEAVVVEDEINGK-DNVGGNEVDDDSS 89
+F++P C + P+ ++ L A EAV E +N + D+V NE ++
Sbjct: 34 HFRHPNCDPCLFSTTTILQPSTWKPTLFVAAAIPEAVNGEKSLNTQNDDVFKNEEEEQ-- 91
Query: 90 VEEPRSRAR-PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+ P+ R R PCE+YVCNLPRS + + LL++FKP+GT++SVEVSRN ETG SRGCGY+ M
Sbjct: 92 -QPPQRRPRGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIM 150
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMN-SRT---RNAEALISPPKKIFVYESPHK 204
SINSAK+AI ALDGSDVGGRE+RV+FS++M+ RT NA + + PK+ F YE+PHK
Sbjct: 151 ESINSAKSAIAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHK 210
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVGNL+ VKPE LRNHF RFG V+S RVLHDRK RV+ F+SF S+AERDAA+SLN
Sbjct: 211 LYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLN 270
Query: 265 GTDFRGRTIIVREGVDRTE 283
GT+F GRTI+VREG RTE
Sbjct: 271 GTEFYGRTIVVREGAQRTE 289
>gi|356520229|ref|XP_003528766.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 277
Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 137/251 (54%), Positives = 180/251 (71%), Gaps = 5/251 (1%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR 94
++ F YPK S + + S + EE VVE+ + ++ V DD EE R
Sbjct: 29 VLQFAYPKRSRTFLEPSSSSSFSPMRKTKEE--VVEERLYREEYVHPRN-DDVLEDEEER 85
Query: 95 SR--ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
+ + CE+YVCNLPR D + LL+MF+P+GT+LSVEV R+ ET S+GCGY+T+GSI
Sbjct: 86 DKRLGKACEVYVCNLPRRCDATYLLDMFRPYGTILSVEVCRDAETNESKGCGYVTLGSIY 145
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
SA+NA+ ALDGSDVGGRE+RVRFSI+MNS+ R+ + S K+I YESPHKLYVGNL+
Sbjct: 146 SARNAVAALDGSDVGGRELRVRFSIEMNSKRRSFNKMNSSTKRISYYESPHKLYVGNLAK 205
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT 272
V+PE LR+ F RFG VVSARVLHD K +RV+ F+SF S+AERDAA+SLNGT++ GRT
Sbjct: 206 TVRPEQLRDLFSRFGNVVSARVLHDFKQGNSRVYAFLSFQSEAERDAAMSLNGTEYYGRT 265
Query: 273 IIVREGVDRTE 283
+IV+EGV+R+E
Sbjct: 266 LIVKEGVERSE 276
>gi|6715645|gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]
Length = 679
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 127/197 (64%), Positives = 151/197 (76%), Gaps = 13/197 (6%)
Query: 83 EVDDDSSVE--EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV-SRNPETGI 139
E + DS V EP + RPCELYVCN+PRS+DI++LL+MF+PFGTV+SVEV SRNP+TG
Sbjct: 445 EPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGE 504
Query: 140 SRGCGYLTMGSINSAKNAIIALDGS---------DVGGREMRVRFSIDMNSRTR-NAEAL 189
SRG GY+TMGSINSAK AI +LDG+ +VGGREMRVR+S+DMN TR N E L
Sbjct: 505 SRGSGYVTMGSINSAKIAIASLDGTVRARETKKQEVGGREMRVRYSVDMNPGTRRNPEVL 564
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
S PKKI +YES HK+YVGNL W +P+ LRNHF +FGT+VS RVLHDRK RVF F+
Sbjct: 565 NSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFL 624
Query: 250 SFSSDAERDAALSLNGT 266
SF+S ERDAALS NGT
Sbjct: 625 SFTSGEERDAALSFNGT 641
>gi|296089011|emb|CBI38714.3| unnamed protein product [Vitis vinifera]
Length = 166
Score = 240 bits (612), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 113/166 (68%), Positives = 135/166 (81%)
Query: 119 MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
MFKP GTV S+EV RN ETG+SRG GY+TM S+ AK AI ALDGSDVGGREMRVRFS D
Sbjct: 1 MFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDGSDVGGREMRVRFSTD 60
Query: 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR 238
MN R RN+EAL S P + ++ESP+KLYVGNL+WA+KPEDLRNHF +FGTVVSARV+HDR
Sbjct: 61 MNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDR 120
Query: 239 KGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDRTES 284
K R +GF+SFSS AE +AA+SLNG +FRGR+++V G+ R ES
Sbjct: 121 KAGKHRAYGFLSFSSAAECEAAMSLNGKEFRGRSLVVSAGMKRVES 166
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +LYV NL + +L F FGTV+S V + + G R G+L+ S + A
Sbjct: 84 PYKLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECE-AA 142
Query: 159 IALDGSDVGGREMRV 173
++L+G + GR + V
Sbjct: 143 MSLNGKEFRGRSLVV 157
>gi|356560231|ref|XP_003548397.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 271
Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 131/286 (45%), Positives = 178/286 (62%), Gaps = 36/286 (12%)
Query: 6 GFLTTSSSLFT-----KITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLA 60
F+ T SS ++ K+ P KRF ++ F YP+ S + P+ S +
Sbjct: 13 AFVVTPSSSYSSVHTLKLQKPQV-KRF-------VLLFAYPRRSRTFL--EPSTSSSSFS 62
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSR--ARPCELYVCNLPRSFDISELLE 118
V + V E+ + +N DD EE R + + CE+YVCNLPRS D + LL+
Sbjct: 63 PVRKTKEVAEEYVYPPEN------DDVLEDEEEREKRLGKACEVYVCNLPRSCDAAYLLD 116
Query: 119 MFKPFGTVLSVEV-SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177
MF+P+GT+LS+EV RN E S+GC Y+T+GSI+SA+NA+ ALDGSDVGG E+RVRFSI
Sbjct: 117 MFRPYGTILSIEVVCRNAENNESKGCSYVTLGSIHSARNAVAALDGSDVGGCELRVRFSI 176
Query: 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+MNSR R+ + S K+I YESPHKLYVGNL+ V+PE LR+ F RFG +VSARVL D
Sbjct: 177 EMNSRRRSFNKMNSSTKRISYYESPHKLYVGNLAKTVRPEQLRDLFCRFGNIVSARVLRD 236
Query: 238 RKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
K +RV+ F+SF S+ +F GRT+IV+EGV+R+E
Sbjct: 237 FKQGNSRVYAFLSFQSE------------EFYGRTLIVKEGVERSE 270
>gi|326497679|dbj|BAK05929.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 112/204 (54%), Positives = 147/204 (72%), Gaps = 2/204 (0%)
Query: 76 KDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
+++ GG +D S + R R RP EL+VCNLPR + ELLE+F P+GTVLSVEVSR+
Sbjct: 105 EEHYGGEPAAEDGSGWD-RRRPRPRELFVCNLPRRCGVDELLELFGPYGTVLSVEVSRDA 163
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL-ISPPK 194
ETGISRGCG++TM S+ A+ AI ALDG D+ GREM V+ + + + RN L +PP
Sbjct: 164 ETGISRGCGFVTMRSLAEARTAINALDGFDLDGREMFVKLAAHVIASRRNPGGLSHTPPM 223
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K ++ES +K+YVGNL+W+V+P+ LR HF + GTVVS R+L DRKG +RV+GF+SFSS
Sbjct: 224 KDHIFESRYKIYVGNLAWSVQPQHLREHFTKCGTVVSTRLLTDRKGGRSRVYGFLSFSSA 283
Query: 255 AERDAALSLNGTDFRGRTIIVREG 278
E +AAL LN T+F GR IIVRE
Sbjct: 284 EELEAALQLNNTEFHGRDIIVREA 307
>gi|115474525|ref|NP_001060859.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|50725630|dbj|BAD33097.1| putative RNA-binding protein RNP-D precursor [Oryza sativa Japonica
Group]
gi|113622828|dbj|BAF22773.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|125559951|gb|EAZ05399.1| hypothetical protein OsI_27607 [Oryza sativa Indica Group]
gi|215704603|dbj|BAG94231.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/184 (54%), Positives = 140/184 (76%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
EL+VCNLPR D+ +L E+FKP+GTVLSVE+SR+PETG+SRGCG++TM S+ A+ A+ A
Sbjct: 135 ELFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNA 194
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG D+ GREM V+ S D+ S+ RN +PP K ++ESPHK+YVGN++W+V+P++LR
Sbjct: 195 LDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIFESPHKIYVGNIAWSVEPQELR 254
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280
+F + GTVVS R+L DRKG RV+GF+SF+S E +AAL L+ T F GR I+VR+ +
Sbjct: 255 EYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAALKLDNTHFHGRNILVRQAHE 314
Query: 281 RTES 284
++
Sbjct: 315 ERQA 318
>gi|357139508|ref|XP_003571323.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 288
Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 139/192 (72%), Gaps = 1/192 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DSS RS RP EL+VCNLPR + +LL +F+P+GTVLSVEVSR+PETGISRGCG++
Sbjct: 89 DSSGWTQRS-PRPRELFVCNLPRRCGVDDLLHLFQPYGTVLSVEVSRDPETGISRGCGFV 147
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
TM S+ +A+ A+ ALDG D+ GREM V+ + + S RN + P K ++ESP+K+Y
Sbjct: 148 TMRSLAAARTAMNALDGFDLDGREMFVKLASHVVSNRRNPSLSHTAPMKDHIFESPYKIY 207
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
VGNL+W+V+P+ LR F + G +VS R+L DRKG RV+GF+SFSS E DAAL LN T
Sbjct: 208 VGNLAWSVQPQHLRELFTQCGNIVSTRLLTDRKGARNRVYGFLSFSSPEELDAALKLNNT 267
Query: 267 DFRGRTIIVREG 278
+F GR IIVRE
Sbjct: 268 NFHGRDIIVREA 279
>gi|242078001|ref|XP_002443769.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
gi|241940119|gb|EES13264.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
Length = 308
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 99/186 (53%), Positives = 133/186 (71%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R RP EL+VCNLPR D+ +LL++F P GTVLSVE+SR+ ETGISRG ++TM S+
Sbjct: 117 RQWPRPRELFVCNLPRRCDVQDLLQLFTPHGTVLSVEISRDAETGISRGTAFVTMRSLAE 176
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A+ AI ALDG ++ GRE+ V+ + D+ S +N P K ++ESPHK+YVGNL+W+
Sbjct: 177 ARTAINALDGFELDGREVFVKLASDVISNRKNVNLAHITPMKDHIFESPHKVYVGNLAWS 236
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
V+P+DLR F + GTVVS R+L DRKG RV+GF+SFSS E +AAL L+ T F GR I
Sbjct: 237 VQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAALKLDRTVFFGRDI 296
Query: 274 IVREGV 279
+V+E +
Sbjct: 297 VVKEAI 302
>gi|413941709|gb|AFW74358.1| hypothetical protein ZEAMMB73_309849 [Zea mays]
Length = 826
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 130/185 (70%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R RP EL+VCNLPR D+ +LLE+F P GTVLSVE+SR+ E+GISRG +TM S+
Sbjct: 635 RQWPRPRELFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAE 694
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A+ AI ALDG D+ GRE+ V+ + D+ S +N P K ++E+PHK+YVGNL+W+
Sbjct: 695 ARAAIDALDGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWS 754
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
V+P+DLR F + GTVVS R+L DRKG RV+GF+SFSS E + AL L+ T F GR I
Sbjct: 755 VQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEALKLDRTVFFGRDI 814
Query: 274 IVREG 278
+V+E
Sbjct: 815 VVKEA 819
>gi|212722626|ref|NP_001131649.1| uncharacterized protein LOC100193009 [Zea mays]
gi|194692152|gb|ACF80160.1| unknown [Zea mays]
Length = 314
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/185 (52%), Positives = 130/185 (70%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R RP EL+VCNLPR D+ +LLE+F P GTVLSVE+SR+ E+GISRG +TM S+
Sbjct: 123 RQWPRPRELFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAE 182
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A+ AI ALDG D+ GRE+ V+ + D+ S +N P K ++E+PHK+YVGNL+W+
Sbjct: 183 ARAAIDALDGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWS 242
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
V+P+DLR F + GTVVS R+L DRKG RV+GF+SFSS E + AL L+ T F GR I
Sbjct: 243 VQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEALKLDRTVFFGRDI 302
Query: 274 IVREG 278
+V+E
Sbjct: 303 VVKEA 307
>gi|363808212|ref|NP_001241976.1| uncharacterized protein LOC100803098 [Glycine max]
gi|255639493|gb|ACU20041.1| unknown [Glycine max]
Length = 191
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/191 (50%), Positives = 123/191 (64%), Gaps = 26/191 (13%)
Query: 119 MFKPFGTVLSVEV--------------------------SRNPETGISRGCGYLTMGSIN 152
MF P GTVLS +V R+ ETG SRG Y+TM SIN
Sbjct: 1 MFNPHGTVLSAQVYCLFNILLSSVFLFFCLSLEISLFQVCRSAETGESRGSAYVTMASIN 60
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
SA+ AI ALD SD GGRE+RVRFS +MN + RN E + S PK++ YE PHKLYVGNLS
Sbjct: 61 SARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSR 120
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT 272
+ P+DL+ FGRFG V S RVL D + RV+ F+S+ S++ERDAA+SLNGT+F GR
Sbjct: 121 SAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGTEFFGRV 180
Query: 273 IIVREGVDRTE 283
+++REGV+R +
Sbjct: 181 LVIREGVERED 191
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +LYV NL RS +L ++F FG V SV V ++ G R +++ S S ++A
Sbjct: 110 PHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHS-ESERDAA 168
Query: 159 IALDGSDVGGREMRVRFSID 178
++L+G++ GR + +R ++
Sbjct: 169 MSLNGTEFFGRVLVIREGVE 188
>gi|222639809|gb|EEE67941.1| hypothetical protein OsJ_25829 [Oryza sativa Japonica Group]
Length = 164
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 115/155 (74%)
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
++SR+PETG+SRGCG++TM S+ A+ A+ ALDG D+ GREM V+ S D+ S+ RN
Sbjct: 9 QISRDPETGLSRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMT 68
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
+PP K ++ESPHK+YVGN++W+V+P++LR +F + GTVVS R+L DRKG RV+GF+
Sbjct: 69 HTPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFL 128
Query: 250 SFSSDAERDAALSLNGTDFRGRTIIVREGVDRTES 284
SF+S E +AAL L+ T F GR I+VR+ + ++
Sbjct: 129 SFASAEELEAALKLDNTHFHGRNILVRQAHEERQA 163
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YV N+ S + EL E F GTV+S + + + G R G+L+ S + A
Sbjct: 81 PHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELE-AA 139
Query: 159 IALDGSDVGGREMRVR 174
+ LD + GR + VR
Sbjct: 140 LKLDNTHFHGRNILVR 155
>gi|218200393|gb|EEC82820.1| hypothetical protein OsI_27609 [Oryza sativa Indica Group]
Length = 164
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 115/155 (74%)
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
++SR+PETG+SRGCG++TM S+ A+ A+ ALDG D+ GREM V+ S D+ S+ RN
Sbjct: 9 QISRDPETGLSRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMT 68
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
+PP K ++ESPHK+YVGN++W+V+P++LR +F + GTVVS R+L DRKG RV+GF+
Sbjct: 69 HTPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFL 128
Query: 250 SFSSDAERDAALSLNGTDFRGRTIIVREGVDRTES 284
SF+S E +AAL L+ T F GR I+VR+ + ++
Sbjct: 129 SFASAEELEAALKLDNTHFHGRNILVRQAHEERQA 163
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YV N+ S + EL E F GTV+S + + + G R G+L+ S + A
Sbjct: 81 PHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELE-AA 139
Query: 159 IALDGSDVGGREMRVR 174
+ LD + GR + VR
Sbjct: 140 LKLDNTHFHGRNILVR 155
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 137/233 (58%), Gaps = 16/233 (6%)
Query: 50 SHPAGFRSVL---AVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCN 106
SH R V A+ EE + E + ++ E + E P R + LYV N
Sbjct: 45 SHVLARRKVFRITALAQEETQITEQSVPEEEETN-KERQPKNEEELPPRRTK---LYVGN 100
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
LPRS DI++L ++F+ FGTV SVEV RN ETGISRG ++TM ++ AK+AI L GSD+
Sbjct: 101 LPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSAIEKLQGSDL 160
Query: 167 GGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRF 226
GGR+M V F + S+ + + E+P++L+VGNL+W+VK E L++ F +
Sbjct: 161 GGRDMIVNFPAKVLSKKKETDD--------SYIETPYQLFVGNLAWSVKKEILKSLFSQH 212
Query: 227 GTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREG 278
G V +A+V++ KG R FGF+ SS +E DA +SL+G +F GR + VR+
Sbjct: 213 GNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHGKEFHGRNLKVRQA 265
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 22/208 (10%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
DDS +E P +L+V NL S L +F G V + +V + + G+ R G+
Sbjct: 181 DDSYIE------TPYQLFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGF 234
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVR----FSIDM----------NSRTRNAEALIS 191
+ + S + ++AI++L G + GR ++VR S DM T +++
Sbjct: 235 VCLSSQSEMEDAIVSLHGKEFHGRNLKVRQARPTSKDMVVSDVEENIAKPSTMVEDSMTE 294
Query: 192 PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
K FV S + +YV NLS +VK + L F + G V+ ARVL+ RK +R +GF++F
Sbjct: 295 TVKATFV-GSAYGVYVSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNF 353
Query: 252 SSDAERDAAL-SLNGTDFRGRTIIVREG 278
SS AE +AA+ +L+ +F R ++V+E
Sbjct: 354 SSQAEVEAAIAALDKKEFYERKLVVKEA 381
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 120/187 (64%), Gaps = 9/187 (4%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E +S + +LYV NLPRS D ++L +F+ FGTV S EV RN ETG+SRG ++TM ++
Sbjct: 94 EEKSPSNRTKLYVGNLPRSCDSAQLTHLFQEFGTVESAEVVRNEETGLSRGFAFVTMSTV 153
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
AK AI L GSD+GGR+M V F + SR E E+P++L+ GNL+
Sbjct: 154 IEAKAAIEKLQGSDLGGRDMIVNFPAAVLSRGNKTEDEY--------VETPYQLFAGNLA 205
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270
W+VK E LR+ F GTV+ A+V+++ KG R FGF+ SS +E +AA+ SLNG +F G
Sbjct: 206 WSVKNEILRDLFSEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVSLNGKEFHG 265
Query: 271 RTIIVRE 277
R ++VR+
Sbjct: 266 RNLVVRQ 272
>gi|357512637|ref|XP_003626607.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355501622|gb|AES82825.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 302
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/184 (50%), Positives = 115/184 (62%), Gaps = 39/184 (21%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YVCNLPRS D LL +F P GTVLS EV RN ETG S+G Y+TMGS N+AKNA+
Sbjct: 42 PTQVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNAL 101
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP--KKIFVYESPHKLYVGNLSWAVKP 216
ALDGSDVGGREM V+FS+ E L SPP ++ YE PHK+YVGNL W
Sbjct: 102 AALDGSDVGGREMLVKFSV---------ETLNSPPMRRRTIYYEGPHKVYVGNL-W---- 147
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
G+ +RV+ F+S+ S ERDA++SLNGT+F GRT++VR
Sbjct: 148 -----------------------GKKSRVYAFVSYLSQRERDASMSLNGTEFCGRTLVVR 184
Query: 277 EGVD 280
E +D
Sbjct: 185 EVID 188
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 102/178 (57%), Gaps = 15/178 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+LY NLP S D ++L + + +G+ VEV N +TG SRG ++TM S+ I
Sbjct: 111 TKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIE 170
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPED 218
LDGS+ GGR +RV FS P K+ +Y E+ +KL+VGNLSW+V E
Sbjct: 171 NLDGSEYGGRTLRVNFSD-------------KPKPKLPLYPETEYKLFVGNLSWSVTSES 217
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
L F +G V+ ARVL+D + +R +GF+ +S+ AE D AL SLNG + GR I V
Sbjct: 218 LNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAIRV 275
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 104/188 (55%), Gaps = 9/188 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S SEL E+F GTV SVE+ + T SRG ++TMGS+ AK AI
Sbjct: 110 LYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMF 169
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY----ESPHKLYVGNLSWAVKPE 217
DGS VGGR ++V F + E L+ K + Y +SPHK+Y GNL W + +
Sbjct: 170 DGSQVGGRTVKVNFP----EVPKGGERLVMGSKILNSYRGFVDSPHKIYAGNLGWGLTSQ 225
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
LR F V+SA+V+++R +R FGF+SF + AAL +NG + +GR + +
Sbjct: 226 GLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDIMNGVEVQGRPLRLN 285
Query: 277 EGVDRTES 284
RT S
Sbjct: 286 LAEARTPS 293
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 101/175 (57%), Gaps = 15/175 (8%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP S D ++L + + +G+ VEV N +TG SRG ++TM S+ I
Sbjct: 112 KLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIEN 171
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
LDGS+ GGR +RV FS P K+ +Y E+ +KL+VGNLSW+V E L
Sbjct: 172 LDGSEYGGRTLRVNFSDK-------------PKPKLPLYPETEYKLFVGNLSWSVTSESL 218
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
F +G V+ ARVL+D + +R +GF+ +S+ AE D AL SLNG + GR I
Sbjct: 219 NQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVELEGRAI 273
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 5/131 (3%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP---CELYVC 105
RS F ++ +V D AV+ + ++G + G + S +P+ P +L+V
Sbjct: 150 RSRGFAFVTMSSVEDCNAVI--ENLDGSEYGGRTLRVNFSDKPKPKLPLYPETEYKLFVG 207
Query: 106 NLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD 165
NL S L ++F+ +G V+ V + ETG SRG G++ + A+ +L+G +
Sbjct: 208 NLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNGVE 267
Query: 166 VGGREMRVRFS 176
+ GR +R+ +
Sbjct: 268 LEGRAIRISLA 278
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 102/174 (58%), Gaps = 3/174 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI
Sbjct: 111 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 170
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR
Sbjct: 171 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLR 229
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ F +SA+V++DR +R FGFI+FSS +A + A ++N + GR +
Sbjct: 230 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVELEGRPL 283
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +LYV NL + L + F +S +V + +G SRG G++T S + K+A+
Sbjct: 211 PHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSAL 270
Query: 159 IALDGSDVGGREMRV 173
++ ++ GR +R+
Sbjct: 271 DTMNEVELEGRPLRL 285
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 102/174 (58%), Gaps = 3/174 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR
Sbjct: 176 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLR 234
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ F +SA+V++DR +R FGFI+FSS ++AL ++N + GR +
Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL 288
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 108/184 (58%), Gaps = 13/184 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY+ NLP D ++L + + FG+V VEV + E+G SRG ++TM + A+N I
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 161 LDGSDVGGREMRVRFSIDMNSR--------TRNAEALISPPKKIFVYESPHKLYVGNLSW 212
LDG DVGGR ++V F +R + +E P + + P+K++VGNLSW
Sbjct: 61 LDGHDVGGRPLKVSFPQSKQNRPSFPRGEGYQRSERAPRPAAR----DDPNKVFVGNLSW 116
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
V L+ F +G VV ARV++DR+ +R FGF+++S +E DAA+ SL+G +F GR
Sbjct: 117 GVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDSLDGAEFDGR 176
Query: 272 TIIV 275
+ V
Sbjct: 177 ELRV 180
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P +R P +++V NL D L E+F +G V+ V + E+G SRG G++T ++
Sbjct: 100 PAARDDPNKVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVS 159
Query: 153 SAKNAIIALDGSDVGGREMRVRFS 176
AI +LDG++ GRE+RV +
Sbjct: 160 EVDAAIDSLDGAEFDGRELRVNLA 183
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 102/181 (56%), Gaps = 17/181 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S S L E+F GTV SVE+ + T SRG ++TMG++ AK AI
Sbjct: 107 LYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRMF 166
Query: 162 DGSDVGGREMRVRFS--------IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
DGS VGGR ++V F + M S+ RN+ + FV +SPHK+Y GNL W
Sbjct: 167 DGSQVGGRTVKVNFPEVPKGGERLVMGSKIRNS-------YRGFV-DSPHKIYAGNLGWG 218
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRT 272
+ + LR F V+SA+V+++R +R FGF+SF + AAL +NG + +GR
Sbjct: 219 LTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNGVEVQGRP 278
Query: 273 I 273
+
Sbjct: 279 L 279
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L E F VLS +V ++G SRG G+++ + SA+ A+
Sbjct: 207 PHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAAL 266
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
++G +V GR +R+ + A A SPP
Sbjct: 267 DIMNGVEVQGRPLRLNLA--------EARAPSSPP 293
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 107/185 (57%), Gaps = 6/185 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP D L +MF G V VEV + +G SRG ++TM ++ A+ AI
Sbjct: 160 KLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKK 219
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI--FVYESPHKLYVGNLSWAVKPED 218
+G ++ GR +RV F R +N + P FV +SPHK+YVGNL+W+V E
Sbjct: 220 FNGFEIDGRSLRVNFP--EVPRLQNGRSPARSPSNFGGFV-DSPHKVYVGNLAWSVTSET 276
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVRE 277
LR G V+ A+V+ DR+ +R FGF+SFSS+AE +AA+S ++G + GR+I V
Sbjct: 277 LREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRVNV 336
Query: 278 GVDRT 282
R+
Sbjct: 337 AKSRS 341
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 107/185 (57%), Gaps = 6/185 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP D L +MF G V VEV + +G SRG ++TM ++ A+ AI
Sbjct: 168 KLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKK 227
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI--FVYESPHKLYVGNLSWAVKPED 218
+G ++ GR +RV F R +N + P FV +SPHK+YVGNL+W+V E
Sbjct: 228 FNGFEIDGRSLRVNFP--EVPRLQNGRSPARSPSNFGGFV-DSPHKVYVGNLAWSVTSET 284
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVRE 277
LR G V+ A+V+ DR+ +R FGF+SFSS+AE +AA+S ++G + GR+I V
Sbjct: 285 LREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRVNV 344
Query: 278 GVDRT 282
R+
Sbjct: 345 AKSRS 349
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/176 (39%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L M + +GT VEV + ETG SRG ++TM SI + I
Sbjct: 108 KLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFVTMSSIEDCETVIEN 167
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDGS GR +RV F A PK+ E+ +KL++GNLSW+V E L
Sbjct: 168 LDGSQYMGRILRVNF------------ADKPKPKEPLYPETEYKLFIGNLSWSVTSESLT 215
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +G VV ARVL+D + +R +GF+ +S+ E + AL SLNG + GR + V
Sbjct: 216 QAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQSLNGVELEGRALRV 271
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGG---NEVDDDSSVEEPRSRARPCELYVC 105
RS F ++ ++ D E V+ + ++G +G D +EP +L++
Sbjct: 146 RSRGFAFVTMSSIEDCETVI--ENLDGSQYMGRILRVNFADKPKPKEPLYPETEYKLFIG 203
Query: 106 NLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD 165
NL S L + F+ +G V+ V + ETG SRG G++ + + A+ +L+G +
Sbjct: 204 NLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQSLNGVE 263
Query: 166 VGGREMRVRFS 176
+ GR +RV +
Sbjct: 264 LEGRALRVSLA 274
>gi|87240850|gb|ABD32708.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 147
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 80/114 (70%), Gaps = 11/114 (9%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YVCNLPRS D LL +F P GTVLS EV RN ETG S+G Y+TMGS N+AKNA+
Sbjct: 42 PTQVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNAL 101
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP--KKIFVYESPHKLYVGNL 210
ALDGSDVGGREM V+FS+ E L SPP ++ YE PHK+YVGNL
Sbjct: 102 AALDGSDVGGREMLVKFSV---------ETLNSPPMRRRTIYYEGPHKVYVGNL 146
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + + + VEV + TG SRG ++TM ++ + I
Sbjct: 117 KLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELVIKN 176
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDGS GGR M+V F A PK+ E+ HKL+VGNLSW V E L
Sbjct: 177 LDGSLYGGRTMKVNF------------ADRPKPKQALYPETEHKLFVGNLSWTVTSEMLT 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
FGR GTVV ARVL+D + +R +GF+ +S+ E D AL SLNG + GR + V
Sbjct: 225 EAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNGMEMEGREMRV 280
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L E F GTV+ V + ETG SRG G++ + A+ +
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 161 LDGSDVGGREMRVRFSI 177
L+G ++ GREMRV ++
Sbjct: 268 LNGMEMEGREMRVNLAL 284
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/176 (40%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + + + VEV + TG SRG ++TM ++ + I
Sbjct: 117 KLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELVIKN 176
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDGS GGR M+V F A PK+ E+ HKL+VGNLSW V E L
Sbjct: 177 LDGSLYGGRTMKVNF------------ADRPKPKQALYPETEHKLFVGNLSWTVTSEMLT 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
FGR GTVV ARVL+D + +R +GF+ +S+ E D AL SLNG + GR + V
Sbjct: 225 EAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNGMEMEGREMRV 280
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L E F GTV+ V + ETG SRG G++ + A+ +
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 161 LDGSDVGGREMRVRFSI 177
L+G ++ GREMRV ++
Sbjct: 268 LNGMEMEGREMRVNLAL 284
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI
Sbjct: 105 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 164
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR
Sbjct: 165 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLR 223
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
+ F +SA+V++DR +R FGFI+FSS +AL
Sbjct: 224 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSAL 264
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
+LYVGNL +++ L F GTV + +++DR +R F F++ S E A+ L
Sbjct: 104 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 163
Query: 264 -NGTDFRGRTIIV 275
+G+ GRT+ V
Sbjct: 164 FDGSQVGGRTVKV 176
>gi|356570013|ref|XP_003553187.1| PREDICTED: LOW QUALITY PROTEIN: 28 kDa ribonucleoprotein,
chloroplastic-like [Glycine max]
Length = 167
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 81/130 (62%), Gaps = 19/130 (14%)
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK 195
E G SRG Y+TM SINSA+ AI+ALD SDVGGR+++VRF ++MN + RN E + S P+
Sbjct: 35 EIGESRGGAYVTMESINSARKAIVALDASDVGGRQVQVRFFVEMNPKRRNLETMNSSPR- 93
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
SW P+DLR F FG V S RVL D + + RV+ F+S+ S+
Sbjct: 94 ---------------SW---PQDLRQLFVSFGNVTSVRVLQDLRKRNCRVYAFVSYHSET 135
Query: 256 ERDAALSLNG 265
+ DAA+SLNG
Sbjct: 136 KHDAAMSLNG 145
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 116 bits (291), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 102/178 (57%), Gaps = 9/178 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY+ NLP + S+L E+F G V+SV+V + T SRG ++TM ++ AK AI
Sbjct: 116 KLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 175
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY----ESPHKLYVGNLSWAVKP 216
DGS +GGR +RV F R E + P+ Y +SPHK+Y GNL W +
Sbjct: 176 FDGSQIGGRTVRVNFP----EVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTS 231
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ LR+ F ++SA++++DR +R FGF+SF + + ++AL S+NG + GR +
Sbjct: 232 QSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNGVEVEGRPL 289
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L + F+ +LS ++ + +G SRG G+++ + A++A+
Sbjct: 217 PHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESAL 276
Query: 159 IALDGSDVGGREMRVRFS 176
+++G +V GR +R+ +
Sbjct: 277 ESMNGVEVEGRPLRLNIA 294
>gi|356537206|ref|XP_003537120.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 298
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 107/184 (58%), Gaps = 5/184 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S S+L + F G V+SVE+ + SRG ++TMGS+ A+ AI
Sbjct: 90 LFVGNLPYSLLSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIRMF 149
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DGS++GGR M+V F+ R ++ + FV +SPHK+Y GNL W + +DLR+
Sbjct: 150 DGSEIGGRIMKVNFTA---IPKRGKRLVMGSNYRGFV-DSPHKIYAGNLGWGLTSQDLRD 205
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +SA+V+++R +R +GF+SF + + +AAL S+NG + +GR + + D
Sbjct: 206 AFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAALNSMNGVEVQGRPLRLNLATD 265
Query: 281 RTES 284
+ S
Sbjct: 266 KNTS 269
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAAL 261
+L+VGNL +++ L FG G VVS +++D +R F F++ S DAER A
Sbjct: 89 RLFVGNLPYSLLSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSMEDAER-AIR 147
Query: 262 SLNGTDFRGRTIIV 275
+G++ GR + V
Sbjct: 148 MFDGSEIGGRIMKV 161
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL +L + F LS +V +G SRG G+++ + + A+
Sbjct: 186 PHKIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAAL 245
Query: 159 IALDGSDVGGREMRVRFSIDMNS 181
+++G +V GR +R+ + D N+
Sbjct: 246 NSMNGVEVQGRPLRLNLATDKNT 268
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 106/188 (56%), Gaps = 13/188 (6%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+V E S + +LY NLP S D ++L + + +G+ +EV + ++G SRG ++TM
Sbjct: 99 AVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTM 158
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
I I LDG + GR +RV FS S+ + PK+ E+ HKL+VG
Sbjct: 159 SCIEDCNAVIENLDGKEFLGRTLRVNFS----SKPK--------PKEPLYPETEHKLFVG 206
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD 267
NLSW+V E L F +GTVV ARVL+D + +R +GF+ +S+ AE +AA+ +LN +
Sbjct: 207 NLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVE 266
Query: 268 FRGRTIIV 275
GR + V
Sbjct: 267 LEGRAMRV 274
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 98/177 (55%), Gaps = 15/177 (8%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + + T VEV + TG SRG ++TM +I + I
Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 205
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
LDGS GR MRV F+ P K+ +Y E+ HKL+VGNLSW V E L
Sbjct: 206 LDGSLYSGRTMRVNFAD-------------KPKPKLPLYPETEHKLFVGNLSWTVTSEML 252
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F + G VV ARVL+D + +R +GF+ +S+ E D AL SLNGT+ GR I V
Sbjct: 253 TEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRV 309
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L EMF+ G V+ V + ETG SRG G++ + A+ +
Sbjct: 237 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 296
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 297 LNGTELEGREIRVNLAL 313
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 98/177 (55%), Gaps = 15/177 (8%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + + T VEV + TG SRG ++TM +I + I
Sbjct: 148 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 207
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
LDGS GR MRV F+ P K+ +Y E+ HKL+VGNLSW V E L
Sbjct: 208 LDGSLYSGRTMRVNFAD-------------KPKPKLPLYPETEHKLFVGNLSWTVTSEML 254
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F + G VV ARVL+D + +R +GF+ +S+ E D AL SLNGT+ GR I V
Sbjct: 255 TEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGTELEGREIRV 311
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L EMF+ G V+ V + ETG SRG G++ + A+ +
Sbjct: 239 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 298
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 299 LNGTELEGREIRVNLAL 315
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 104/182 (57%), Gaps = 9/182 (4%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A LYV NLP S S+L ++F G+V+SVE+ + T SRG ++TMGS+ AK
Sbjct: 100 AEASRLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKE 159
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY----ESPHKLYVGNLSW 212
AI DGS VGGR ++V F R E + PK Y +SP+K+Y GNLSW
Sbjct: 160 AIRMFDGSQVGGRTVKVNFP----EVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSW 215
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
+ E LR+ F ++ A+V+++R+ +R FGF+SF+S ++AL ++N + GR
Sbjct: 216 RLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGR 275
Query: 272 TI 273
+
Sbjct: 276 PL 277
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L + F +L +V E+G SRG G+L+ S +A++A+
Sbjct: 205 PYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESAL 264
Query: 159 IALDGSDVGGREMRVRFS 176
A++ +V GR +R+ +
Sbjct: 265 NAMNEVEVEGRPLRLNLA 282
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 108/208 (51%), Gaps = 15/208 (7%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+DE+ + DS S +LY NLP + D ++L + + + + V
Sbjct: 94 QDEVQDGEGGAVEGSSQDSRPSVAASTTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMV 153
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
EV + TG SRG ++TM ++ + I LDGS GGR M+V F+
Sbjct: 154 EVLYDRITGRSRGFAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFAD------------ 201
Query: 190 ISPPKKIFVY-ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
P K+ +Y E+ HKL+VGNLSW V E L FGR G VV ARVL+D + +R +GF
Sbjct: 202 -RPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGF 260
Query: 249 ISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ +S+ E D A+ SLNGT+ GR I V
Sbjct: 261 VCYSTKEEMDEAISSLNGTELEGREIRV 288
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L E F G V+ V + ETG SRG G++ + AI +
Sbjct: 216 KLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISS 275
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 276 LNGTELEGREIRVNLAL 292
>gi|388506424|gb|AFK41278.1| unknown [Lotus japonicus]
Length = 199
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 101/166 (60%), Gaps = 11/166 (6%)
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
S+L E+F GTV+SVEV + T SRG ++TMGS++ AK AI DGS VGGR +RV
Sbjct: 4 SQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRV 63
Query: 174 RFSIDMNSRTRNAEALISPPK-----KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT 228
F + E L+ PK + FV +S HK+Y GNL W V +DL++ F
Sbjct: 64 NFP----EVPKGGERLVMGPKIRNNNRDFV-DSSHKIYAGNLGWRVSSQDLKDVFAEQPG 118
Query: 229 VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+VSA+V+++R +R FGF++F + + +AAL ++NG + +GR +
Sbjct: 119 LVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 164
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL +L ++F ++S +V ++G SRG G++T + + A+
Sbjct: 94 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 153
Query: 161 LDGSDVGGREMRVRFS 176
++G +V GRE+R+ +
Sbjct: 154 MNGVEVQGRELRLNLA 169
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + SEL ++F GTV+ V++ + T SRG G++TMGSI AK A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ S +GGR ++V F + I + +V +SPHK+Y GNL W + + L+
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYV-DSPHKVYAGNLGWNLTSQGLK 236
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ FG V+ A+V+++R +R FGFISF S +AL ++NG + GR +
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL + L + F VL +V TG SRG G+++ S + ++A+
Sbjct: 218 PHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
++G +V GR +R+ + + T +SPP
Sbjct: 278 ATMNGVEVEGRALRLNLASEREKPT------VSPP 306
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + SEL ++F GTV+ V++ + T SRG G++TMGSI AK A+
Sbjct: 110 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 169
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ S +GGR ++V F + I + +V +SPHK+Y GNL W + + L+
Sbjct: 170 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYV-DSPHKVYAGNLGWNLTSQGLK 228
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ FG V+ A+V+++R +R FGFISF S +AL ++NG + GR +
Sbjct: 229 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 282
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL + L + F VL +V TG SRG G+++ S + ++A+
Sbjct: 210 PHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 269
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
++G +V GR +R+ + + T +SPP
Sbjct: 270 ATMNGVEVEGRALRLNLASEREKPT------VSPP 298
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 99/174 (56%), Gaps = 3/174 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + SEL ++F GTV+ V++ + T SRG G++TMGSI AK A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKGAMQMF 177
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ S +GGR ++V F + I + +V +SPHK+Y GNL W + + L+
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYV-DSPHKVYAGNLGWDLTSQGLK 236
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ FG V+ A+V+++R +R FGFISF S +AL ++NG + GR +
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L + F VL +V TG SRG G+++ S + ++A+
Sbjct: 218 PHKVYAGNLGWDLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
++G +V GR +R+ + + T +SPP
Sbjct: 278 ATMNGVEVEGRALRLNLASEREKPT------VSPP 306
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 98/177 (55%), Gaps = 15/177 (8%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP S D ++L + + +G+ +EV + +TG SRG ++TM I I
Sbjct: 114 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 173
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
LDG + GR +RV FS P K +Y E+ HKL+VGNLSW+V E L
Sbjct: 174 LDGKEYLGRTLRVNFSN-------------KPKAKEPLYPETEHKLFVGNLSWSVTNEIL 220
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +GTVV ARVL+D + +R +GF+ FS+ E +AAL +LN + GR + V
Sbjct: 221 TQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVELEGRAMRV 277
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 110/205 (53%), Gaps = 25/205 (12%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D + E +SR L+V NLP S S+L ++F G V+SVE+ + T SRG
Sbjct: 97 DLNQEAESTQSR----RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFA 152
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFS--------IDMNSRTRNAEALISPPKKI 196
++TMG++ A+ AI DG+ VGGR ++V F + M S R
Sbjct: 153 FVTMGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRG----------- 201
Query: 197 FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
+SPHK+Y GNL W + + LR F + ++SA+V+++R +R +GF+SF + +
Sbjct: 202 -YVDSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAED 260
Query: 257 RDAALS-LNGTDFRGRTIIVREGVD 280
+ ALS +NG + +GR + ++ VD
Sbjct: 261 VEVALSAMNGVEVQGRPLRLKLAVD 285
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 134/277 (48%), Gaps = 22/277 (7%)
Query: 10 TSSSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGF---RSVLAVVDEEA 66
T SLFT PP+ P F+ L + ++ L++ RS F S A +EE
Sbjct: 25 TKPSLFT---PPSKPLTLQFSCLNSSVSL---SLAAPTHRSPLVTFVAQTSDWAQQEEEQ 78
Query: 67 VVVEDEINGKD-NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGT 125
+ E E + G + D+S VE P +L+V NLP D +L +F+ GT
Sbjct: 79 SLAETEAGLESWEPNGEDAGDESFVEPPEE----AKLFVGNLPYDVDSQKLAMLFEQAGT 134
Query: 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN 185
V EV N ET SRG G++TM ++ A++A+ + D+ GR + V + +R
Sbjct: 135 VEIAEVIYNRETDQSRGFGFVTMSTVEEAESAVEKFNRYDIDGRLLTVNKASPRGTRPER 194
Query: 186 AEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
S +ES +YVGNL W V L+ F + G VV+ARV++DR+ +R
Sbjct: 195 PPPRRS-------FESSLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRG 247
Query: 246 FGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
FGF++ S + E DA +L+G GR I V DR
Sbjct: 248 FGFVTMSDETEMNDAVAALDGESLDGRAIKVSVAEDR 284
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 103/182 (56%), Gaps = 9/182 (4%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A LYV NLP S S+L +F G+V+SVE+ + T SRG ++TMGS+ AK
Sbjct: 243 AEASRLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKE 302
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY----ESPHKLYVGNLSW 212
AI DGS VGGR ++V F R E + PK Y +SP+K+Y GNLSW
Sbjct: 303 AIRMFDGSQVGGRTVKVNFP----EVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSW 358
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
+ E LR+ F ++ A+V+++R+ +R FGF+SF+S ++AL ++B + GR
Sbjct: 359 RLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMBEVEVEGR 418
Query: 272 TI 273
+
Sbjct: 419 PL 420
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L + F +L +V E+G SRG G+L+ S +A++A+
Sbjct: 348 PYKIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESAL 407
Query: 159 IALDGSDVGGREMRVRFS 176
A+B +V GR +R+ +
Sbjct: 408 NAMBEVEVEGRPLRLNLA 425
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + +GT VEV + +TG SRG ++TM ++ I
Sbjct: 114 KLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIEN 173
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDGS GR +RV FS PK+ E+ HKL+VGNLSW+V E L
Sbjct: 174 LDGSQFMGRILRVNFSDK------------PKPKEPLYPETEHKLFVGNLSWSVTSESLV 221
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +G +V ARVL+D + +R +GF+ +++ +E + AL SLNG + GR + V
Sbjct: 222 EAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVSLNGVELEGRAMRV 277
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 117/218 (53%), Gaps = 12/218 (5%)
Query: 62 VDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFK 121
+E ++D + D V+++ VE ++ +LYV NLP S SEL E+F+
Sbjct: 76 TEENTTALDDPQSETDEFDQEIVEEEGDVEAIKA-TEEGKLYVGNLPYSMTSSELTEVFE 134
Query: 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181
G V S EV + T SRG G++TMGS+ AK AI +G+ GGR +RV F
Sbjct: 135 EAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKAIQMFNGTQFGGRSVRVNFP----E 190
Query: 182 RTRNAEALISPPK-----KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
R E + P+ K F+ +S HK+Y GNL W + E LR+ F V+SA+V++
Sbjct: 191 VPRGGEREVMGPRIQSGYKGFI-DSEHKIYAGNLGWRLTSEGLRDAFANQPGVLSAKVIY 249
Query: 237 DRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+R + +R FGF+SF S++ A ++NG + GR +
Sbjct: 250 ERDSRRSRGFGFVSFESAENAEAALEAMNGEEVEGRPM 287
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 96/177 (54%), Gaps = 13/177 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+LY NLP S D S+L + + +G +EV + TG SRG ++TM SI I
Sbjct: 102 TKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIE 161
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
LDGS GR +RV FS PK+ E+ +KL+VGNLSW+V E L
Sbjct: 162 NLDGSAYMGRILRVNFSDK------------PKPKEPLYPETEYKLFVGNLSWSVTSEIL 209
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +G VV ARV++D + +R +GF+S+S+ +E + AL ++N + GR I V
Sbjct: 210 TQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRV 266
>gi|226498114|ref|NP_001145579.1| uncharacterized protein LOC100279049 [Zea mays]
gi|195658417|gb|ACG48676.1| hypothetical protein [Zea mays]
Length = 120
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 76/111 (68%)
Query: 168 GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG 227
GRE+ V+ + D+ S +N P K ++E+PHK+YVGNL+W+V+P+DLR F + G
Sbjct: 3 GREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDLRELFTQCG 62
Query: 228 TVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
TVVS R+L DRKG RV+GF+SFSS E + AL L+ T F GR I+V+E
Sbjct: 63 TVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEALKLDRTVFFGRDIVVKEA 113
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 107/222 (48%), Gaps = 17/222 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
++D E E+E G+D GG+ EP A+ L+V NLP D +L +F
Sbjct: 80 LIDWEPEAAENETGGEDYAGGD-------FAEPSEDAK---LFVGNLPYDVDSEKLAMLF 129
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+P GTV EV N ET SRG G++TM ++ A+ + D GR + V N
Sbjct: 130 EPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAKFNRYDYNGRPLTV------N 183
Query: 181 SRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG 240
+ +E ++YVGNLSW + L F G VVSARV++DR+
Sbjct: 184 KAAPRGSRPEREERPPRTFEPVLRVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRET 243
Query: 241 QTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
+R FGF++ S + E DA +L+G GRTI V DR
Sbjct: 244 GRSRGFGFVTMSDEKEMNDAIAALDGQILEGRTIKVSVAEDR 285
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 96/176 (54%), Gaps = 13/176 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + +G+ VEV + ETG SRG ++TM SI I
Sbjct: 108 KLYFGNLPYNVDSAQLAGIIQEYGSPEMVEVLYHRETGRSRGFAFVTMSSIEDCNAVIEN 167
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LD S GR +RV FS + PK+ E+ +KL+VGNLSW+ E L
Sbjct: 168 LDESQYMGRILRVNFSDN------------PKPKEPLYPETEYKLFVGNLSWSATSESLT 215
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +G VV ARVL+D + +R +GF+ +S+ AE AL SL+G + GR + V
Sbjct: 216 QAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDGVELEGRALRV 271
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVE-DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
RS F ++ ++ D AV+ DE + D+ +EP +L+V NL
Sbjct: 146 RSRGFAFVTMSSIEDCNAVIENLDESQYMGRILRVNFSDNPKPKEPLYPETEYKLFVGNL 205
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
S L + F+ +G V+ V + ETG SRG G++ + + A+++LDG ++
Sbjct: 206 SWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDGVELE 265
Query: 168 GREMRVRFS 176
GR +RV +
Sbjct: 266 GRALRVSLA 274
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 125/266 (46%), Gaps = 26/266 (9%)
Query: 26 RFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVD 85
RF F+ +N S S P V+ V + + E+E ++GG V
Sbjct: 39 RFNFSLSSRPVNLTLSLKSKTLRNSSP-----VVTFVSQTSNWAEEEEGEDGSIGGTSVT 93
Query: 86 DDSSVE--------EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
D S E EP A+ L+V NLP D L +F+ GTV EV N +T
Sbjct: 94 VDESFESEDGVGFPEPPEEAK---LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDT 150
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
SRG G++TM ++ A+ A+ + +V GR + V + SR P ++
Sbjct: 151 DQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSR---------PERQPR 201
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
VY++ ++YVGNL W V L F G VV ARV+ DR+ +R FGF+ S++ E
Sbjct: 202 VYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEV 261
Query: 258 DAAL-SLNGTDFRGRTIIVREGVDRT 282
+ A+ +L+G + GR I V +RT
Sbjct: 262 NVAIAALDGQNLEGRAIKVNVAEERT 287
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 98/176 (55%), Gaps = 13/176 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D + L + + T VEV + TG SRG ++TM ++ + I
Sbjct: 134 KLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 193
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+ GR MRV +M + + PK+ E+ HKL+VGNLSW V PE L
Sbjct: 194 LDGTLYSGRTMRV----NMADKPK--------PKEPLYPETEHKLFVGNLSWTVTPEMLT 241
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ F + G VV ARVL+D + +R +GF+ +S+ E D A+ +LNGT+ GR I V
Sbjct: 242 DAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRV 297
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L + F+ G V+ V + ETG SRG G++ + AI
Sbjct: 225 KLFVGNLSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 284
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 285 LNGTEIEGREIRVNLAL 301
>gi|388500434|gb|AFK38283.1| unknown [Lotus japonicus]
Length = 273
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 94/176 (53%), Gaps = 13/176 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP S D ++L + + +G+ +EV + ++G SRG ++TM + I
Sbjct: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG + GR +RV S PK+ E+ HKL+VGNLSW V E L
Sbjct: 162 LDGKEFLGRTLRVNLSDK------------PKPKEPLYPETEHKLFVGNLSWTVTSESLI 209
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +GTVV ARVL+D + +R +GF+ +S +E + AL SLN + GR I V
Sbjct: 210 QVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRAIRV 265
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 96/176 (54%), Gaps = 13/176 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D + L + + VEV + TG SRG ++TM ++ + I
Sbjct: 135 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 194
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+ GR MRV +M R + PK E+ HKL+VGNLSW V PE L
Sbjct: 195 LDGTLYSGRTMRV----NMADRPK--------PKAPLYPETEHKLFVGNLSWTVTPEMLT 242
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ F R G VV ARVL+D + +R +GF+ +S+ E D A+ +LNGT+ GR I V
Sbjct: 243 DAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRV 298
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L + F+ G V+ V + ETG SRG G++ + AI
Sbjct: 226 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 285
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 286 LNGTEIEGREIRVNLAL 302
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 127/269 (47%), Gaps = 26/269 (9%)
Query: 22 ATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGG 81
+ P F+ P IN S S P ++ V + + E+E ++GG
Sbjct: 35 SKPHHSNFSLPPRPINLPLSLKSKTLRNSSP-----IVTFVSQTSDWPEEEEGEDGSIGG 89
Query: 82 NEVDDDSSVE--------EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
V D S + EP A+ L+V NLP D L +F+ GTV EV
Sbjct: 90 TSVTVDESFDTEDGGKFPEPPEEAK---LFVGNLPYDVDSQALAMLFEQAGTVEISEVIY 146
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
N +T SRG G++TM ++ AK A+ + +V GR + V + SR P
Sbjct: 147 NRDTDQSRGFGFVTMSTVEEAKKAVEKFNRYEVNGRLLTVNIAAPRGSR---------PE 197
Query: 194 KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
++ Y++ ++YVGNL W V + L+ F G VV ARV++DR+ +R FGF++ S+
Sbjct: 198 RQPRQYDAAFRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSN 257
Query: 254 DAE-RDAALSLNGTDFRGRTIIVREGVDR 281
+ E DA +L+G + GR I V +R
Sbjct: 258 ENEVNDAIAALDGQNLEGRAIKVNVAEER 286
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 102/182 (56%), Gaps = 11/182 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y+ NLP S D +EL + + G+V VEV + TG SRG + TM S+ A +
Sbjct: 112 KVYLGNLPFSCDSAELAGIIQEHGSVEMVEVIYDQNTGRSRGFAFATMSSVEDANALVEN 171
Query: 161 LDGSDVGGREMRVRF------SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
LDGS GGR +RV S+ +N R ++ S + + H++Y+GNLSW V
Sbjct: 172 LDGSQYGGRTLRVNLREEASRSLRVNLRDKSR----SEQRNQTNNDGQHRVYIGNLSWDV 227
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
E L F G ++ A+++ DR+ +R FGFI+FS+ +E +AA+ SLNG + GR +
Sbjct: 228 NEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNGKELEGRAM 287
Query: 274 IV 275
V
Sbjct: 288 RV 289
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+Y+ NL S+D++E L E+F G +L ++ + ETG SRG G++T + + A+ A+
Sbjct: 218 VYIGNL--SWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVA 275
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAE 187
+L+G ++ GR MRV D+ +RN E
Sbjct: 276 SLNGKELEGRAMRV----DLALSSRNIE 299
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 96/176 (54%), Gaps = 13/176 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D + L + + VEV + TG SRG ++TM ++ + I
Sbjct: 251 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 310
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+ GR MRV +M R + PK E+ HKL+VGNLSW V PE L
Sbjct: 311 LDGTLYSGRTMRV----NMADRPK--------PKAPLYPETEHKLFVGNLSWTVTPEMLT 358
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ F R G VV ARVL+D + +R +GF+ +S+ E D A+ +LNGT+ GR I V
Sbjct: 359 DAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGTEIEGREIRV 414
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L + F+ G V+ V + ETG SRG G++ + AI
Sbjct: 342 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 401
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 402 LNGTEIEGREIRVNLAL 418
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 3/174 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + SEL ++F G V+ V++ + T SRG G++TMG+I AK AI
Sbjct: 119 LYVGNLPYTITSSELSQLFGEAGNVVDVQIVYDKVTDRSRGFGFVTMGTIEEAKEAIQMF 178
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ S +GGR ++V + I + +V +SPHK+Y GNL W + + L+
Sbjct: 179 NSSQIGGRTVKVNLPEVPRGGEREVMRTKIRDNNRSYV-DSPHKIYAGNLGWNLTSQGLK 237
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ FG V+ A+V+++R +R FGFISF S + +AL ++NG + GR +
Sbjct: 238 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQSALATMNGVEVEGRAL 291
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL + L + F VL +V TG SRG G+++ S ++A+
Sbjct: 219 PHKIYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQSAL 278
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
++G +V GR +R+ + + T +SPP
Sbjct: 279 ATMNGVEVEGRALRLNLASERERPT------VSPP 307
>gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein [Vicia faba var. minor]
Length = 289
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 27/231 (11%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVG---------GNEVDDDSSVEEPRSRARPCELYVCN 106
R +AV EEAVV D+ G + + + V E +R + LY N
Sbjct: 67 RFYVAVAQEEAVVAVDDEEKVVVEEEEKENEEGQGEKENGEEIVAEEDTRTK---LYFGN 123
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
LP S D ++L + + +G+ VEV + +TG SRG + TM + K I LDG +
Sbjct: 124 LPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKSRGFAFATMTCVEDCKAVIENLDGKEF 183
Query: 167 GGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDLRNHFGR 225
GR +RV FS P K +Y E+ +KL++GNLSW V E L F
Sbjct: 184 MGRTLRVNFSDK-------------PKAKESLYPETEYKLFIGNLSWKVTSEILTEAFQE 230
Query: 226 FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
GTVV ARV++D + +R +GF+S+++ +E +AAL+ +N + GR + V
Sbjct: 231 HGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTIMNDVELEGRALRV 281
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 101/177 (57%), Gaps = 2/177 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NLP + D ++L E+ GTV VEV + +G SRG ++TM S + A+ I A
Sbjct: 24 KVYVGNLPWTCDSAQLAEICSQHGTVDVVEVIYDKLSGRSRGFAFVTMASHDDAQALINA 83
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPP-KKIFVYESPHKLYVGNLSWAVKPEDL 219
LDGSD+GGR ++V F + R ++ PP + P+KL+VGN+ W +
Sbjct: 84 LDGSDMGGRALKVNFPQSQKDKPRFEKSEARPPTADRRPRDDPNKLFVGNIPWGCDEAAM 143
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ F +G+VV A++++DR +R FGF++ + A+ +L+GT+ GR + V
Sbjct: 144 TSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTMEKVGDAQTAMENLDGTELDGRELRV 200
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 54/83 (65%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R R P +L+V N+P D + + +F P+G+V+ ++ + ++G SRG G++TM +
Sbjct: 121 RPRDDPNKLFVGNIPWGCDEAAMTSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTMEKVGD 180
Query: 154 AKNAIIALDGSDVGGREMRVRFS 176
A+ A+ LDG+++ GRE+RV F+
Sbjct: 181 AQTAMENLDGTELDGRELRVNFA 203
>gi|217073820|gb|ACJ85270.1| unknown [Medicago truncatula]
Length = 285
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 22/199 (11%)
Query: 78 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
N+GG +V E +R + LY NLP S D + L + + +G+ +EV + +T
Sbjct: 100 NIGGE------TVAEVDTRTK---LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDT 150
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G SRG ++TM + I LDG + GR +RV FS PK+
Sbjct: 151 GKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDK------------PKPKEPL 198
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
E+ +KL+VGNL+W V E L F GTVV ARVL D + +R +GF+S+++ +E
Sbjct: 199 YPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEM 258
Query: 258 DAALS-LNGTDFRGRTIIV 275
D AL+ ++ + GRT+ V
Sbjct: 259 DTALAIMDNVELEGRTLRV 277
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 10/184 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP D L +F+ G V EV N +T SRG G++TM ++ A+ A+
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ DV GR + V N R E PP+ +E +++YVGN+ W + L
Sbjct: 196 MYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARL 246
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREG 278
F G VVSARV++DR+ +R FGF++ +S+AE DA +L+G GRTI V
Sbjct: 247 EQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
Query: 279 VDRT 282
DR+
Sbjct: 307 EDRS 310
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+ + +YV N+P D + L ++F G V+S V + ETG SRG G++TM S
Sbjct: 223 PRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 282
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI LDG + GR +RV + D + R
Sbjct: 283 EMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312
>gi|357439793|ref|XP_003590174.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355479222|gb|AES60425.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 387
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 104/199 (52%), Gaps = 22/199 (11%)
Query: 78 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
N+GG +V E +R + LY NLP S D + L + + +G+ +EV + +T
Sbjct: 202 NIGGE------TVAEVDTRTK---LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDT 252
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G SRG ++TM + I LDG + GR +RV FS PK+
Sbjct: 253 GKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDK------------PKPKEPL 300
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
E+ +KL+VGNL+W V E L F GTVV ARVL D + +R +GF+S+++ +E
Sbjct: 301 YPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEM 360
Query: 258 DAALS-LNGTDFRGRTIIV 275
D AL+ ++ + GRT+ V
Sbjct: 361 DTALAIMDNVELEGRTLRV 379
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 134/285 (47%), Gaps = 29/285 (10%)
Query: 10 TSSSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVV 69
T SLF+ PP+ P F+ + + ++ S +R+H + + +A + A
Sbjct: 31 TKPSLFS---PPSKPLTLQFSCINSSVSL------SLAARAHRSPLVTRVAQTSDWAQQE 81
Query: 70 EDEIN--GKDNVGGNEVDDDSSVEEP-------RSRARPCE---LYVCNLPRSFDISELL 117
ED+ + G +E S EP S A P E L+V NLP D +L
Sbjct: 82 EDDTATFQDEEQGLSETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLA 141
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177
+F+ GTV EV N ET SRG G++TM ++ A+NA+ D GR + V +
Sbjct: 142 MLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFSRYDFDGRLLTVNKAS 201
Query: 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+R PP+ F E +YVGNL W V L F G VV+ARV++D
Sbjct: 202 PRGTRPERP-----PPRHSF--EPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYD 254
Query: 238 RKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
R+ + +R FGF++ S + E +DA +L+G GR I V DR
Sbjct: 255 RETRRSRGFGFVTMSDETEMKDAVAALDGQSLDGRPIRVSVAEDR 299
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 93 PRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
PR P +YV NLP D + L ++F G V++ V + ET SRG G++TM
Sbjct: 212 PRHSFEPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDE 271
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
K+A+ ALDG + GR +RV + D R
Sbjct: 272 TEMKDAVAALDGQSLDGRPIRVSVAEDRPRR 302
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 19/231 (8%)
Query: 55 FRSVLAVVDEEAVVVEDEINGKDN---VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSF 111
F SVL+ D+ +V++D+ G D VG E + +EP A+ L+V NLP
Sbjct: 55 FVSVLSE-DDNTLVLDDQEQGGDFPSFVG--EAGETEEYQEPSEDAK---LFVGNLPYDI 108
Query: 112 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171
D L ++F+ G V EV N ET SRG G++TM ++ A A+ D+ GR +
Sbjct: 109 DSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLL 168
Query: 172 RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS 231
V + SR P + ++ +++YVGN+ W + L F G VVS
Sbjct: 169 TVNKAAPRGSR---------PERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVS 219
Query: 232 ARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 281
ARV+ DR+ +R FGF++ SS+AE A++ L+G GRTI V +R
Sbjct: 220 ARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 132/280 (47%), Gaps = 27/280 (9%)
Query: 5 TGFLTTSSSLFTKITPPATPKRFGF-TSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVD 63
T F T+ S F IT + P + F TS P+ ++ + S+ F ++ V
Sbjct: 15 TVFDTSIKSPFISIT--SKPIKVVFSTSFPSWVSLKTSNFST---------FNTIPLVAQ 63
Query: 64 EEAVVVEDEINGKDNVG-GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKP 122
+DE +D V G E D S E +LYV NLP + L ++F
Sbjct: 64 TSDWAQQDE---EDTVTLGEESFGDGSEETFPEPPEEAKLYVGNLPYDVNSENLAQLFDQ 120
Query: 123 FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
GTV E+ N ET SRG G++TM +++ A+ AI D+ GR + V + SR
Sbjct: 121 AGTVEVAEIIYNRETDQSRGFGFVTMSTVDEAEKAIEKFHRYDLNGRFLTVNKAAPRGSR 180
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
P++ V++ +++YVGNL W V L F G VV+ARV+ DR+
Sbjct: 181 ----------PERPSVFKIAYRIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGR 230
Query: 243 TRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
+R FGF++ SS+ E DA +L+G GR I V +R
Sbjct: 231 SRGFGFVTMSSETELNDAIAALDGQSLDGRAITVNIAQER 270
>gi|168054234|ref|XP_001779537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669018|gb|EDQ55613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 110/193 (56%), Gaps = 12/193 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + D ++L E+ +V +V+V + ++G SRG ++TM + A++ I
Sbjct: 1 KLYVGNLPWTCDSAQLAEICGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSVIDR 60
Query: 161 LDGSDVGGREMRVRFSIDMNSR---------TRNAEALISPPKK--IFVYESPHKLYVGN 209
LDGSD GGR ++V F +R R PP++ V ++ +K+++GN
Sbjct: 61 LDGSDFGGRPLKVSFPQPRENRDNKPRFGNNERGDRRSDRPPRQGSDRVLDNTNKMFIGN 120
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDF 268
LSW+ + L F +G+VV A+V++DR +R FGF++ S+ +E +A +L+G +F
Sbjct: 121 LSWSCDADALVQVFSEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQNLDGAEF 180
Query: 269 RGRTIIVREGVDR 281
GR + V E +R
Sbjct: 181 EGREMRVSEAGER 193
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRA-----RPCELYVCNLPRSFDISELLEMFKPFGTVLS 128
+ K G NE D S PR + ++++ NL S D L+++F +G+V+
Sbjct: 83 DNKPRFGNNERGDRRSDRPPRQGSDRVLDNTNKMFIGNLSWSCDADALVQVFSEYGSVVD 142
Query: 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
+V + +TG SRG G++TM + + NA+ LDG++ GREMRV
Sbjct: 143 AKVVYDRDTGKSRGFGFVTMSAASEVSNAVQNLDGAEFEGREMRV 187
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 10/183 (5%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A +++V NLP S D ++L +F+ G+V VEV + +TG SRG G++TM + A
Sbjct: 18 AEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGA 77
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWA 213
AI +G GR +RV NS R+ A SP ++S +KLYVGNL+W
Sbjct: 78 AIEQFNGYTFQGRPLRV------NSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWG 131
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRT 272
V L N F GTV+ A+V++DR+ +R FGF+++ S E + A+S L+G D GR
Sbjct: 132 VDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQ 191
Query: 273 IIV 275
I V
Sbjct: 192 IRV 194
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP D L E+F GTV EV N ET SRG G++TM ++ A+ A+
Sbjct: 121 AKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVE 180
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + +R PP+ +E ++YVGNL W V L
Sbjct: 181 MFNRYDINGRLLTVNKAAPRGARVDR------PPR---AFEPAFRMYVGNLPWQVDDARL 231
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
F G VV ARV++DR+ +R FGF++ S+ E D A+ +L+G GR I V
Sbjct: 232 EQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVA 291
Query: 279 VDR 281
DR
Sbjct: 292 EDR 294
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+ +YV NLP D + L ++F G V+ V + ETG SRG G++TM +
Sbjct: 208 PRAFEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQT 267
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG + GR +RV + D R
Sbjct: 268 ELDDAIAALDGQSLDGRAIRVNVAEDRPRR 297
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 138/284 (48%), Gaps = 47/284 (16%)
Query: 13 SLFTKITPPATPKRFGFTSLPTL--------INFQYPKLSSCWSRSHPAGFRSVLAV--- 61
SLFTK +P F+SLP+L +F L S SH F S +AV
Sbjct: 12 SLFTKNSPQC------FSSLPSLSLNPNFKPFSFSSVSLRPSLSISH--RFISRVAVSSE 63
Query: 62 VDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFK 121
D+E +D DD+ P R L+V NLP S D ++L E+F+
Sbjct: 64 FDQEEDTFDD-------------GDDTPSYSPNQR-----LFVGNLPFSVDSAQLAEIFE 105
Query: 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181
G V VEV + TG SRG G++TM S + A L+G V GRE+RV
Sbjct: 106 NAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPP 165
Query: 182 RTRNAEALISP---------PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
R+ N+ +P P + + ++++VGNL+W V L + FG G V+ A
Sbjct: 166 RSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEA 225
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+V++DR+ +R FGF++FSS E D+A+ +L+G D GR I V
Sbjct: 226 KVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRV 269
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 99/196 (50%), Gaps = 13/196 (6%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ + EP A+ L+V NLP D +L ++F G V EV N ET SRG G++
Sbjct: 83 EDTYSEPPEEAK---LFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFI 139
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
TM ++ A+ A+ + D+ GR + V + SR PP+ +E ++Y
Sbjct: 140 TMSTVEEAEKAVEMFNRYDLNGRFLTVNKAAPRGSRPER------PPQ---AFEPSFRIY 190
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
VGNL W V L F G VV ARV++DR Q +R FGF++ SS+ E DA +L+G
Sbjct: 191 VGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDG 250
Query: 266 TDFRGRTIIVREGVDR 281
GR I V +R
Sbjct: 251 QSLDGRAIRVNVAEER 266
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 94/183 (51%), Gaps = 10/183 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP D +L ++F G V EV N ET SRG G++TM ++ A+ A+
Sbjct: 133 AKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVE 192
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP+ +E ++YVGNL W V L
Sbjct: 193 MFNRYDLNGRFLTVNKAAPRGSRPER------PPQ---AFEPSFRIYVGNLPWQVDDARL 243
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREG 278
F G VV ARV++DR Q +R FGF++ SS+ E DA +L+G GR I V
Sbjct: 244 EQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVA 303
Query: 279 VDR 281
+R
Sbjct: 304 EER 306
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 126/256 (49%), Gaps = 12/256 (4%)
Query: 29 FTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS 88
F S P L + KL+S S S P + A D V ++ I +D+ + D
Sbjct: 36 FLSKPFLKPLKPLKLNSQNSNSLPHSHGTFAATFDNFEVETDENIAAQDDPQSETDEFDQ 95
Query: 89 SVEEPRS--------RARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
+ E +AR +LYV NLP S SEL E+F+ G V EV + T
Sbjct: 96 EIVEEEEEEEDVVAIKAREEGKLYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDR 155
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFV 198
SRG G++TM S+ AK AI +GS VGGR +RV F + E I K F+
Sbjct: 156 SRGFGFVTMESVEEAKEAIRMFNGSQVGGRTLRVNFPEVPRGGEREVMEPRIRSGYKGFI 215
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAER 257
+S HK+Y GNL W + E L + F ++SA+V+++R +R FGF+SF S++
Sbjct: 216 -DSEHKIYAGNLGWRLTSEGLGDAFANQPGLLSAKVIYERDTGRSRGFGFVSFDSAENAE 274
Query: 258 DAALSLNGTDFRGRTI 273
A ++NG + GR +
Sbjct: 275 AALEAMNGEEVDGRPL 290
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 107/204 (52%), Gaps = 15/204 (7%)
Query: 81 GNEVDDDSS--VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
GNE +++S EP A+ L+V NLP D L ++F G V EV N ET
Sbjct: 110 GNEDEEESEQGFSEPPEEAK---LFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETD 166
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
SRG G++TM ++ A+ A+ L+G D+ GR + V + SR PP++
Sbjct: 167 RSRGFGFVTMSTVEEAEKAVEMLNGFDMNGRLLTVNKAAPRGSRPER------PPRE--- 217
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-R 257
+E ++YVGNL W V L F G V+SARV+ DR+ +R FGF+S +S++E
Sbjct: 218 FEPSCRVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMN 277
Query: 258 DAALSLNGTDFRGRTIIVREGVDR 281
DA +L+G GR I V +R
Sbjct: 278 DAIAALDGQTLDGRAIRVNVAEER 301
>gi|15218972|ref|NP_176208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana]
gi|4249379|gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein
(RNP1) from Phaseolus vulgaris [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
gi|222423361|dbj|BAH19654.1| AT1G60000 [Arabidopsis thaliana]
gi|332195527|gb|AEE33648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 258
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 99/194 (51%), Gaps = 12/194 (6%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E DD +S A +LY NLP + D + L ++ + F VEV N +TG SRG
Sbjct: 68 EKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRG 127
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
++TM ++ I LDG++ GR ++V F+ P K+ E+
Sbjct: 128 FAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKP-----------KPNKEPLYPETE 176
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
HKL+VGNLSW V E L F G VV ARV+ D +R +GF+ +SS AE + AL
Sbjct: 177 HKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALE 236
Query: 262 SLNGTDFRGRTIIV 275
SL+G + GR I V
Sbjct: 237 SLDGFELEGRAIRV 250
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 8/182 (4%)
Query: 3 AATGFLTTSSSLFTKITPPATPKRFGFTSLPTLI-NFQYPKLSSC-WSRS--HPAGFRSV 58
A+ L +++ TK+ P +L +I +F P+L ++R GF V
Sbjct: 72 GASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFV 131
Query: 59 LAVVDEEAVVVEDEINGKDNVGG----NEVDDDSSVEEPRSRARPCELYVCNLPRSFDIS 114
E+ ++ D ++G + +G N D +EP +L+V NL +
Sbjct: 132 TMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSE 191
Query: 115 ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174
L F+ G V+ V + +TG SRG G++ S + A+ +LDG ++ GR +RV
Sbjct: 192 SLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVN 251
Query: 175 FS 176
+
Sbjct: 252 LA 253
>gi|297837519|ref|XP_002886641.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
gi|297332482|gb|EFH62900.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 94/176 (53%), Gaps = 12/176 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D + L ++ + F VEV N +TG SRG ++TM ++ I
Sbjct: 80 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 139
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG++ GR ++V F+ P K+ E+ HKL+VGNLSW V E L
Sbjct: 140 LDGTEYLGRALKVNFADKP-----------KPNKEPLYPETEHKLFVGNLSWTVTSESLA 188
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F G VV ARV++D +R +GF+ +SS AE + AL SL+G + GR I V
Sbjct: 189 EAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 244
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG----NEVDDDSSVEEPRSRARPCELYVCNLPR 109
GF V E+ ++ D ++G + +G N D +EP +L+V NL
Sbjct: 121 GFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSW 180
Query: 110 SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR 169
+ L E F+ G V+ V + +TG SRG G++ S + A+ +LDG ++ GR
Sbjct: 181 TVTSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGR 240
Query: 170 EMRVRFS 176
+RV +
Sbjct: 241 AIRVNLA 247
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 111/225 (49%), Gaps = 15/225 (6%)
Query: 62 VDEEAVVVEDEINGKDNVGGNEVDDDSS----VEEPRSRARPCELYVCNLPRSFDISELL 117
+DEEA + D D DDS+ VE P +L+V N P D +L
Sbjct: 71 LDEEAGLSLDWEPTADAAETETGADDSAEGYFVEPPED----AKLFVGNFPFDVDSEKLA 126
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177
+F GTV EV N +T +SRG G++TM ++ A++A+ +G D GR + V +
Sbjct: 127 MLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAVEKFNGYDYNGRSLVVNKAS 186
Query: 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
SR E P+ +E ++YV NL+W V L F G +VSARV++D
Sbjct: 187 PKGSRPERTE---RAPR---TFEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYD 240
Query: 238 RKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
R+ +R FGF++ S + E DA +L+G GRTI V DR
Sbjct: 241 RETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDR 285
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE---------EPRSRARPCELYV 104
GF V EEA ++ NG D G + V + +S + PR+ +YV
Sbjct: 151 GFGFVTMNTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYV 210
Query: 105 CNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164
NL D S L ++F G ++S V + ETG SRG G++TM +AI ALDG
Sbjct: 211 ANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQ 270
Query: 165 DVGGREMRVRFSID 178
+ GR +RV + D
Sbjct: 271 SLEGRTIRVSVAED 284
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 4/180 (2%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A +++V NLP S D ++L +F+ G+V VEV + +TG SRG G++TM + A
Sbjct: 72 AEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGA 131
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
A+ +G GR +RV R+ A SP ++S +KLYVGNL+W V
Sbjct: 132 AVEQFNGYTFQGRPLRVN---SGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDN 188
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
L N F GTV+ A+V++DR+ +R FGF+++ S E + A+S L+G D GR I V
Sbjct: 189 STLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRV 248
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/180 (37%), Positives = 101/180 (56%), Gaps = 4/180 (2%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A +++V NLP S D ++L +F+ G+V VEV + +TG SRG G++TM + A
Sbjct: 77 AEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGA 136
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
A+ +G GR +RV R+ A SP ++S +KLYVGNL+W V
Sbjct: 137 AVEQFNGYTFQGRPLRVN---SGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDN 193
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
L N F GTV+ A+V++DR+ +R FGF+++ S E + A+S L+G D GR I V
Sbjct: 194 STLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQIRV 253
>gi|388493590|gb|AFK34861.1| unknown [Medicago truncatula]
Length = 285
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 22/199 (11%)
Query: 78 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
N+GG +V E +R + LY NLP S D + L + + +G+ +EV + +T
Sbjct: 100 NIGGE------TVAEVDTRTK---LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDT 150
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G SRG ++TM + I LDG + GR +RV FS PK+
Sbjct: 151 GKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDK------------PKPKEPL 198
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
E+ +KL+VGNL+W V E F GTVV ARVL D + R +GF+S+++ +E
Sbjct: 199 YPETEYKLFVGNLAWTVTFESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSEM 258
Query: 258 DAALS-LNGTDFRGRTIIV 275
D AL+ ++ + GRT+ V
Sbjct: 259 DTALAIMDNVELEGRTLRV 277
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 83 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
+V D+ VE + + P E L+V NLP D +L +F G V EV N ET
Sbjct: 35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDR 94
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P+ F
Sbjct: 95 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF-- 145
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
E ++YVGNL W V L F G VVSARV+ DR+ +R FGF++ SS++E D
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205
Query: 259 AALSLNGTDFRGRTIIV 275
A +L+G GR + V
Sbjct: 206 AIAALDGQTLDGRAVRV 222
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 96/184 (52%), Gaps = 10/184 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NLP D L ++F+ G V EV N ETG SRG G++TM +I A AI
Sbjct: 128 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 187
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ D+ GR + V + SR PP++ + + YVGNL W V L
Sbjct: 188 LNRYDINGRLLNVNRAAPRGSRVER------PPRQ---FAPAFRAYVGNLPWQVDDSRLL 238
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F G VV+A V++DR+ +R FGF+S +S E D A+S L+G + GR + V
Sbjct: 239 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAA 298
Query: 280 DRTE 283
+R +
Sbjct: 299 ERPQ 302
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S LL++F G V++ V + E+G SRG G+++M S
Sbjct: 214 PRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKE 273
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 274 ELDDAISALDGQELDGRPLRVNVAAERPQR 303
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 96/184 (52%), Gaps = 10/184 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NLP D L ++F+ G V EV N ETG SRG G++TM +I A AI
Sbjct: 129 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 188
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ D+ GR + V + SR PP++ + + YVGNL W V L
Sbjct: 189 LNRYDINGRLLNVNRAAPRGSRVER------PPRQ---FAPAFRAYVGNLPWQVDDSRLL 239
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F G VV+A V++DR+ +R FGF+S +S E D A+S L+G + GR + V
Sbjct: 240 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVAA 299
Query: 280 DRTE 283
+R +
Sbjct: 300 ERPQ 303
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S LL++F G V++ V + E+G SRG G+++M S
Sbjct: 215 PRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKE 274
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 275 ELDDAISALDGQELDGRPLRVNVAAERPQR 304
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 96/185 (51%), Gaps = 10/185 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ETG SRG G++TM +I A AI
Sbjct: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ D+ GR + V + SR PP++ + + YVGNL W V L
Sbjct: 76 MLNRYDINGRLLNVNRAAPRGSRVER------PPRQ---FAPAFRAYVGNLPWQVDDSRL 126
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREG 278
F G VV+A V++DR+ +R FGF+S +S E D A+S L+G + GR + V
Sbjct: 127 LQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 186
Query: 279 VDRTE 283
+R +
Sbjct: 187 AERPQ 191
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S LL++F G V++ V + E+G SRG G+++M S
Sbjct: 103 PRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKE 162
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 163 ELDDAISALDGQELDGRPLRVNVAAERPQR 192
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 83 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
+V D+ VE + + P E L+V NLP D +L +F G V EV N ET
Sbjct: 28 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDR 87
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P+ F
Sbjct: 88 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF-- 138
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
E ++YVGNL W V L F G VVSARV+ DR+ +R FGF++ SS++E D
Sbjct: 139 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 198
Query: 259 AALSLNGTDFRGRTIIV 275
A +L+G GR + V
Sbjct: 199 AIAALDGQTLDGRAVRV 215
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 138/284 (48%), Gaps = 47/284 (16%)
Query: 13 SLFTKITPPATPKRFGFTSLPTL--------INFQYPKLSSCWSRSHPAGFRSVLAV--- 61
SLFTK +P F+SLP+L +F L S SH F S +AV
Sbjct: 12 SLFTKNSPQC------FSSLPSLSLNPNFKPFSFSSVSLRPSLSISH--RFISRVAVSSE 63
Query: 62 VDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFK 121
D+E +D DD+ P R L+V +LP S D ++L E+F+
Sbjct: 64 FDQEEDTFDD-------------GDDTPSYSPNQR-----LFVGSLPFSVDSAQLAEIFE 105
Query: 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181
G V VEV + TG SRG G++TM S + A L+G V GRE+RV
Sbjct: 106 NAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPP 165
Query: 182 RTRNAEALISP---------PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
R+ N+ +P P + + ++++VGNL+W V L + FG G V+ A
Sbjct: 166 RSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEA 225
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+V++DR+ +R FGF++FSS E D+A+ +L+G D GR I V
Sbjct: 226 KVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRV 269
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 106/213 (49%), Gaps = 15/213 (7%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
ED +D G +V + + EP A+ L+V NL D L +F+ GTV
Sbjct: 102 EDSFESQDAEG--DVSEGAEFPEPSEEAK---LFVGNLAYDVDSQALAMLFEQAGTVEIA 156
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
EV N ET SRG G++TM ++ A+ A+ + D+ GR + V + SR
Sbjct: 157 EVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPRGSR------- 209
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
P + VYE ++YVGNL W V L F G VV ARV++DR+ +R FGF+
Sbjct: 210 --PERAPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFV 267
Query: 250 SFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
+ S++ E DA +L+G + GR I V +R
Sbjct: 268 TMSNENELNDAIAALDGQNMEGRAIRVNVAEER 300
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 113/230 (49%), Gaps = 34/230 (14%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDI 113
GFR + V V +E+ + GG+E +D ++V NLP S D
Sbjct: 47 GFRPLEPVRAAATAAVTEELEAEGRSGGDEFSED------------LRVFVGNLPFSVDS 94
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
++L +F+ G+V VEV + TG SRG G++TM S+ + A+ +G + GR +RV
Sbjct: 95 AQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQFNGYVLDGRSLRV 154
Query: 174 RFSIDMNSRTRNAEALISPPKKIFVYESPHK-------LYVGNLSWAVKPEDLRNHFGRF 226
NS PP + SP + +YVGNLSW V L N F
Sbjct: 155 ------NSGP--------PPPRDRSSRSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQ 200
Query: 227 GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
G V+ AR+++DR+ +R FGF+++ S E + A+S L+G D GR I V
Sbjct: 201 GEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRV 250
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V EE V D+ NG + N G D
Sbjct: 109 MVEVIYDKLTG---RSRGFGFVTMSSV--EEVEVAVDQFNGYVLDGRSLRVNSGPPPPRD 163
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS R R +YV NL D S L +F G VL + + E+G SRG G++
Sbjct: 164 RSSRSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFV 223
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NAI LDG+D+ GR++RV
Sbjct: 224 TYGSAEEVENAISNLDGADLDGRQIRV 250
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 110/223 (49%), Gaps = 13/223 (5%)
Query: 63 DEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEM 119
D E V E E G+D + + + P E ++V NLP D +L +
Sbjct: 109 DFEGKVPEWEAEGEDAAATEAIRGEGESGDEEGFVEPPEEAKIFVGNLPYDVDSEKLAML 168
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F+ GTV EV N ET SRG G++TM ++ ++ A+ L D+ GR + V +
Sbjct: 169 FEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAVEMLHRYDLDGRFLTVNKAAPR 228
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
SR PP+ V E +++YVGNL W V L F G VVSARV+ DR+
Sbjct: 229 GSRPER------PPR---VSEPGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRE 279
Query: 240 GQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
+R FGF++ S+++E DA +L+G + GR I V +R
Sbjct: 280 TNRSRGFGFVTMSTESELNDAIAALDGQNLDGRPIRVNVAEER 322
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+S V + ET SRG G++TM + +
Sbjct: 236 PRVSEPGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTES 295
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
+AI ALDG ++ GR +RV + + RT
Sbjct: 296 ELNDAIAALDGQNLDGRPIRVNVAEERPRRT 326
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 3/192 (1%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D D VEE R+ + +++V NLP S D + L E+F+ G V VEV + TG SRG G
Sbjct: 72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFG 131
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
++TM S + A +G ++ GR +RV R ++ S + ++S ++
Sbjct: 132 FVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGS--RGGGSFDSSNR 189
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A+ SL
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249
Query: 264 NGTDFRGRTIIV 275
+G D GR I V
Sbjct: 250 DGVDLNGRAIRV 261
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 30/224 (13%)
Query: 68 VVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVL 127
+ E E D G D+ +S EE R+ +++V NLP S D + L E+F+ G V
Sbjct: 68 IEEVEAGDDDEEEGGLSDEGASYEE-RNANPDLKIFVGNLPFSVDSAALAELFERAGDVE 126
Query: 128 SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
VEV + TG SRG G++TM S + + A +G ++ GR +RV
Sbjct: 127 MVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVN------------- 173
Query: 188 ALISPPKKIFVY---------------ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
+ +PPK+ + +S +++YVGNL+W+V + L F G VV A
Sbjct: 174 SGPAPPKRENSFGDNSSYQGGRGGGSMDSSNRVYVGNLAWSVDQQQLETLFSEQGKVVDA 233
Query: 233 RVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIV 275
+V++DR +R FGF+++SS E DA SL+G D GR I V
Sbjct: 234 KVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRAIRV 277
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 100/183 (54%), Gaps = 10/183 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP + D +L E+F+ G VL V + + ETG SRG G++TMG++ A+ +
Sbjct: 113 TKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVE 172
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ + GR + V + ++ + P + S +K+YVGNL W L
Sbjct: 173 LFNRHSLEGRLLTVNKAAPRGTK-------VERPSQ--AGSSTNKIYVGNLPWQADDNSL 223
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREG 278
F G V+ ARV++DR+ +R FGF+++SS++E DA +L+GTD GR + V
Sbjct: 224 LQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIA 283
Query: 279 VDR 281
DR
Sbjct: 284 EDR 286
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 88 SSVEEP-RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ VE P ++ + ++YV NLP D + LL++F G VL V + ETG SRG G++
Sbjct: 194 TKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFV 253
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
T S + +AI ALDG+D+ GR +RV + D
Sbjct: 254 TYSSESEVNDAIAALDGTDMDGRPLRVNIAED 285
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 103 bits (258), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 100/183 (54%), Gaps = 10/183 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP + D +L E+F+ G VL V + + ETG SRG G++TMG++ A+ +
Sbjct: 113 TKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVE 172
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ + GR + V + ++ + P + S +K+YVGNL W L
Sbjct: 173 LFNRHSLEGRLLTVNKAAPRGTK-------VERPSQ--AGSSTNKIYVGNLPWQADDNSL 223
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREG 278
F G V+ ARV++DR+ +R FGF+++SS++E DA +L+GTD GR + V
Sbjct: 224 LQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGTDMDGRPLRVNIA 283
Query: 279 VDR 281
DR
Sbjct: 284 EDR 286
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 88 SSVEEP-RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ VE P ++ + ++YV NLP D + LL++F G VL V + ETG SRG G++
Sbjct: 194 TKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFV 253
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
T S + +AI ALDG+D+ GR +RV + D
Sbjct: 254 TYSSESEVNDAIAALDGTDMDGRPLRVNIAED 285
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 30/240 (12%)
Query: 41 PKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPC 100
P+L + + GFR + V V +E+ + GG+E DD
Sbjct: 36 PQLHAL--SAAAVGFRPLEPVRAAATAAVTEELEAEGRSGGDEFSDD------------L 81
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S+ + A+
Sbjct: 82 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 141
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVKP 216
+G + GR +RV N+ + + P +++YVGNLSW V
Sbjct: 142 FNGYVLDGRSLRV-----------NSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGVDN 190
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
L N F G V+ AR+++DR+ +R FGF+++ S E + A+S L+G D GR I V
Sbjct: 191 SALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRV 250
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V EE V D+ NG + N G D
Sbjct: 109 MVEVIYDKLTG---RSRGFGFVTMSSV--EEVEVAVDQFNGYVLDGRSLRVNSGPPPPRD 163
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS R R +YV NL D S L +F G VL + + E+G SRG G++
Sbjct: 164 RSSPSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFV 223
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NAI LDG+D+ GR++RV
Sbjct: 224 TYGSAEEVENAISNLDGADLDGRQIRV 250
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 117/240 (48%), Gaps = 30/240 (12%)
Query: 41 PKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPC 100
P+L + + GFR + V V +E+ + GG+E DD
Sbjct: 38 PQLHAL--SAAAVGFRPLEPVRAAATAAVTEELEAEGRSGGDEFSDD------------L 83
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S+ + A+
Sbjct: 84 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQ 143
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVKP 216
+G + GR +RV N+ + + P +++YVGNLSW V
Sbjct: 144 FNGYVLDGRSLRV-----------NSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGVDN 192
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
L N F G V+ AR+++DR+ +R FGF+++ S E + A+S L+G D GR I V
Sbjct: 193 SALANLFSEQGEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGADLDGRQIRV 252
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V EE V D+ NG + N G D
Sbjct: 111 MVEVIYDKLTG---RSRGFGFVTMSSV--EEVEVAVDQFNGYVLDGRSLRVNSGPPPPRD 165
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS R R +YV NL D S L +F G VL + + E+G SRG G++
Sbjct: 166 RSSPSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFV 225
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NAI LDG+D+ GR++RV
Sbjct: 226 TYGSAEEVENAISNLDGADLDGRQIRV 252
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 113/228 (49%), Gaps = 29/228 (12%)
Query: 53 AGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFD 112
AGFR + V V +E+ + GG E + ++V NLP S D
Sbjct: 47 AGFRPLEPVRAAATAAVTEELEAEGQPGGEE-----------EFSEDLRVFVGNLPFSVD 95
Query: 113 ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172
++L +F+ G+V VEV + TG SRG G++TM S+ + A+ +G + GR +R
Sbjct: 96 SAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVQEVEAAVEQFNGYVLDGRSLR 155
Query: 173 VRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVKPEDLRNHFGRFGT 228
V NS PP+ P +++YVGNLSW V L N F G
Sbjct: 156 V------NSGP-------PPPRDPSSQRGPRGDANRVYVGNLSWGVDNSALANLFSEQGE 202
Query: 229 VVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
V+ AR+++DR+ +R FGF+++ S E + A+S L+G+D GR I V
Sbjct: 203 VLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGSDLDGRQIRV 250
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 15/147 (10%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V + EA V ++ NG + N G D
Sbjct: 111 MVEVIYDKLTG---RSRGFGFVTMSSVQEVEAAV--EQFNGYVLDGRSLRVNSGPPPPRD 165
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS PR A +YV NL D S L +F G VL + + E+G SRG G++
Sbjct: 166 PSSQRGPRGDAN--RVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFV 223
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NAI LDGSD+ GR++RV
Sbjct: 224 TYGSAEEVENAISNLDGSDLDGRQIRV 250
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 10/185 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F G V EV N E+G SRG G++TM +I A AI
Sbjct: 105 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 164
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP++ + S + YVGNL W + L
Sbjct: 165 TFNRYDISGRLLNVNRAAQRGSRVER------PPRQ---FASSFRAYVGNLPWQAEDSRL 215
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREG 278
F G VV+A +++DR+ +R FGF++ +S + D+A+S L+G + GR + V
Sbjct: 216 VQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 275
Query: 279 VDRTE 283
+R +
Sbjct: 276 AERPQ 280
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP + S L++MF G V++ + + ETG SRG G++TM S
Sbjct: 192 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 251
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 252 DLDSAISALDGQEMDGRPLRVNVAAERPQR 281
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 10/185 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F G V EV N E+G SRG G++TM +I A AI
Sbjct: 105 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 164
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP++ + S + YVGNL W + L
Sbjct: 165 TFNRYDISGRLLNVNRAAQRGSRVER------PPRR---FASSFRAYVGNLPWQAEDSRL 215
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREG 278
F G VV+A +++DR+ +R FGF++ +S + D+A+S L+G + GR + V
Sbjct: 216 VQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 275
Query: 279 VDRTE 283
+R +
Sbjct: 276 AERPQ 280
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP + S L++MF G V++ + + ETG SRG G++TM S
Sbjct: 192 PRRFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 251
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 252 DLDSAISALDGQEMDGRPLRVNVAAERPQR 281
>gi|359806610|ref|NP_001241528.1| uncharacterized protein LOC100820203 [Glycine max]
gi|255645445|gb|ACU23218.1| unknown [Glycine max]
gi|255645775|gb|ACU23380.1| unknown [Glycine max]
Length = 289
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 12/153 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP S D ++L + + FG+ +EV + +TG SRG ++TM I I
Sbjct: 118 KLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 177
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG + GR +RV FS S+ + PK+ E+ HKL+VGNLSW+V E L
Sbjct: 178 LDGKEFLGRTLRVNFS----SKPK--------PKEPLYPETEHKLFVGNLSWSVTNEILT 225
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F +GTVV ARVL+D + +R +GF+ +S+
Sbjct: 226 QAFQEYGTVVGARVLYDGETGRSRGYGFVCYST 258
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 131/276 (47%), Gaps = 38/276 (13%)
Query: 1 MAAATGFLTTSSSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLA 60
MA A L T +L + PA+ S P I+F+ S W R + A
Sbjct: 1 MATAISSLVTPPALHRRCLSPASVS----VSAPIRISFRAAAASQAWRRGLALRVSASSA 56
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
V++ VV AR +LYV N+PR+ EL +MF
Sbjct: 57 VLEAPEVVA---------------------------AR--KLYVGNVPRTVTNDELRDMF 87
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
GTV EV + T SR G++TM ++ A A+ AL+G++VGGR+++V +
Sbjct: 88 AAHGTVERAEVMYDKYTNRSRRFGFVTMSTVEEANAAVEALNGTEVGGRKIKVNVT---E 144
Query: 181 SRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG 240
S N + + +FV +S +K+YVGNL+ V E L+N F G ++SA V H
Sbjct: 145 SFLPNIDRSAPESEPVFV-DSQYKVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGT 203
Query: 241 QTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
++ +GF++FSS+ E +AA+ + N + G+ I V
Sbjct: 204 SKSKGYGFVTFSSEEEVEAAVATFNNAELEGQPIRV 239
>gi|296089370|emb|CBI39142.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 96/165 (58%), Gaps = 9/165 (5%)
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
S+L ++F G+V+SVE+ + T SRG ++TMGS+ AK AI DGS VGGR ++V
Sbjct: 4 SQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRTVKV 63
Query: 174 RFSIDMNSRTRNAEALISPPKKIFVY----ESPHKLYVGNLSWAVKPEDLRNHFGRFGTV 229
F R E + PK Y +SP+K+Y GNLSW + E LR+ F +
Sbjct: 64 NFP----EVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGL 119
Query: 230 VSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ A+V+++R+ +R FGF+SF+S ++AL ++N + GR +
Sbjct: 120 LGAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVEVEGRPL 164
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L + F +L +V E+G SRG G+L+ S +A++A+
Sbjct: 92 PYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESAL 151
Query: 159 IALDGSDVGGREMRVRFS 176
A++ +V GR +R+ +
Sbjct: 152 NAMNEVEVEGRPLRLNLA 169
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 6/180 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP + D ++L E+F+ G V VEV + TG SRG G++TM S+ A+ A
Sbjct: 87 KLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQ 146
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVKP 216
+G ++ GR +RV S +R +A P ++++V NL+W V
Sbjct: 147 FNGYELDGRALRVN-SGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAWGVDN 205
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
L++ F G V+ ARV++DR+ +R FGF++FSS E ++A+ SLNG D GR I V
Sbjct: 206 VALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNGVDLNGRAIRV 265
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/176 (38%), Positives = 102/176 (57%), Gaps = 5/176 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+PR+ EL MF GTVL +V + +G SR G++TM S+ A AI +
Sbjct: 70 KLYVGNIPRTVTNDELRAMFADHGTVLRADVMYDKYSGRSRRFGFVTMSSVEEANAAIES 129
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ ++VGGR+++V + S N + P+ FV +S +K+YVGNL+ V E L+
Sbjct: 130 LNETEVGGRKIKVNVT---ESFLPNIDPSAPEPEPAFV-DSQYKVYVGNLAKTVTTEVLK 185
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
N F G V+SA V ++ +GF++FSS+ E +AA+S N T+ G+ I V
Sbjct: 186 NFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNNTELEGQPIRV 241
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 49 RSHPAGFRSVLAVVDEEAVVV---EDEING---KDNVGGN---EVDDDSSVEEPRSRARP 99
RS GF ++ +V + A + E E+ G K NV + +D + EP
Sbjct: 108 RSRRFGFVTMSSVEEANAAIESLNETEVGGRKIKVNVTESFLPNIDPSAPEPEPAFVDSQ 167
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NL ++ L F G VLS VSR P T S+G G++T S + A+
Sbjct: 168 YKVYVGNLAKTVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVS 227
Query: 160 ALDGSDVGGREMRV 173
+ +++ G+ +RV
Sbjct: 228 TFNNTELEGQPIRV 241
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NLP + D ++L +F+ G+V VEV + TG SRG G++TMGS+ A+
Sbjct: 87 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 146
Query: 160 ALDGSDVGGREMRVRFS-----IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+G GR +RV + RT A + ++S +KLYVGNLSW V
Sbjct: 147 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRA---MGGGGGGGSFDSANKLYVGNLSWGV 203
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 273
L N F G V+ A+V++DR +R FGF+++ S E + A+S L+G D GR I
Sbjct: 204 DNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDGVDLDGRQI 263
Query: 274 IV 275
V
Sbjct: 264 RV 265
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 12/194 (6%)
Query: 91 EEPRSRARPCE--LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
EE A P E ++V NLP + ++L ++F G V S EV N ET SRG G+++M
Sbjct: 125 EEDSYSAPPEEVKIFVGNLPFDLESADLADLFNKAGVVESAEVIYNRETDQSRGFGFVSM 184
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
++ AI D D+ GR + V + SR PP+ +E ++YVG
Sbjct: 185 STVEEVVKAIEMFDRYDINGRTLTVNKAAPRGSRAER------PPRD---FEPAFRVYVG 235
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTD 267
N+ W V L F +G V AR++ DR+ +R FGF++ SS E DA +L+G+D
Sbjct: 236 NIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSSQIEMEDAIAALDGSD 295
Query: 268 FRGRTIIVREGVDR 281
GR I V +R
Sbjct: 296 LDGRAIKVSMAQER 309
>gi|242079661|ref|XP_002444599.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
gi|241940949|gb|EES14094.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
Length = 292
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 102/204 (50%), Gaps = 13/204 (6%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G+E + + + EP A+ +YV NLP D L ++F G V EV N ETG S
Sbjct: 98 GDEGEGEYAAVEPPEEAK---VYVGNLPYDIDSEGLAQLFDQAGVVEVAEVIYNRETGQS 154
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM +I A AI + D+ GR + V + +R PP++ +
Sbjct: 155 RGFGFVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMER------PPRQ---FA 205
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ YVGNL W V L F G VV+A V++DR+ +R FGF++ S E D A
Sbjct: 206 PAFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDA 265
Query: 261 LS-LNGTDFRGRTIIVREGVDRTE 283
+S L+G + GR + V +R +
Sbjct: 266 ISALDGQELDGRPLRVNVAAERPQ 289
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S L+++F G V++ V + E+G SRG G++TM S
Sbjct: 201 PRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKE 260
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 261 ELDDAISALDGQELDGRPLRVNVAAERPQR 290
>gi|357148860|ref|XP_003574918.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 95/185 (51%), Gaps = 10/185 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F G V EV N E+G SRG G++TM +I A AI
Sbjct: 108 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 167
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP++ + S + YVGNL W + L
Sbjct: 168 MFNRYDISGRLLNVNRAAQRGSRVER------PPRQ---FASAFRAYVGNLPWQAEDSRL 218
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREG 278
F G V++A V++DR+ +R FGF++ +S E D A+S L+G + GR + V
Sbjct: 219 VQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKEELDDAISALDGQELDGRPLRVNVA 278
Query: 279 VDRTE 283
+R +
Sbjct: 279 AERPQ 283
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP + S L+++F G VL+ V + ETG SRG G++TM S
Sbjct: 195 PRQFASAFRAYVGNLPWQAEDSRLVQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKE 254
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 255 ELDDAISALDGQELDGRPLRVNVAAERPQR 284
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 96/185 (51%), Gaps = 10/185 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F G V EV N E+G SRG G++TM +I A AI
Sbjct: 105 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEADKAIE 164
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ ++ GR + V + SR PP++ + S + YVGNL W + L
Sbjct: 165 TFNRYNISGRLLNVNRAAQRGSRVER------PPRQ---FASSFRAYVGNLPWQAEDSRL 215
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREG 278
F G VV+A +++DR+ +R FGF++ +S + D+A+S L+G + GR + V
Sbjct: 216 VQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 275
Query: 279 VDRTE 283
+R +
Sbjct: 276 AERPQ 280
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP + S L++MF G V++ + + ETG SRG G++TM S
Sbjct: 192 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 251
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 252 DLDSAISALDGQEMDGRPLRVNVAAERPQR 281
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 93/177 (52%), Gaps = 10/177 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NLP D +L +F+ GTV EV N ET SRG G+++M ++ A+ A+
Sbjct: 141 AKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVE 200
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
D+ GR + V + SR PP+ V+E +++YVGNL W V L
Sbjct: 201 MFHRHDLDGRLLTVNKAAPRGSRPER------PPR---VFEPGYRIYVGNLPWDVDNARL 251
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIV 275
F G VV ARV++DR +R FGF++ S++ E DA +L+G GR I V
Sbjct: 252 EQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRV 308
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 107/196 (54%), Gaps = 6/196 (3%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G E D S +E +S ++ +L+V NLP + D + L +F+ G V VEV + TG S
Sbjct: 72 GQEEDFLSDGDE-QSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTGRS 130
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM +I + A +G ++ GR +RV F + + P+ ++
Sbjct: 131 RGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNF----GPPPQKESSFSRGPRGGETFD 186
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
S +++YVGNLSW V L F G V+ A+V++DR +R FGF+++SS E D A
Sbjct: 187 SGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNA 246
Query: 261 L-SLNGTDFRGRTIIV 275
+ SLNG + GR I V
Sbjct: 247 IDSLNGAELDGRAIRV 262
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 13/204 (6%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G+E + + + EP A+ +YV NLP + L ++F G V EV N ETG S
Sbjct: 95 GDEGEGEYAAVEPPEEAK---VYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQS 151
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM +I A AI + D+ GR + V + +R PP++ +
Sbjct: 152 RGFGFVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMER------PPRQ---FA 202
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ YVGNL W L F +G VV+A V++DR+ +R FGF++ S E D A
Sbjct: 203 PAFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDA 262
Query: 261 LS-LNGTDFRGRTIIVREGVDRTE 283
+S L+G + GR + V +R +
Sbjct: 263 ISALDGQELDGRPLRVNVAAERPQ 286
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S L+++F +G V++ V + ETG SRG G++TM S
Sbjct: 198 PRQFAPAFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKE 257
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 258 ELDDAISALDGQELDGRPLRVNVAAERPQR 287
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 18/220 (8%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
G ++++DD V E + +L+V NLP S D + L +F+ G V VEV + TG
Sbjct: 67 GFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGR 126
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-----------------RFSIDMNSR 182
SRG G++TM + + A +G ++ GR +RV R
Sbjct: 127 SRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGG 186
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
R+ + + +S +++YVGNLSW V L+ F G VV A+V++DR
Sbjct: 187 GRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR 246
Query: 243 TRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
+R FGF+++SS E DA SLNG D GR+I V +R
Sbjct: 247 SRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + D ++L E+ GTV VEV + +G SRG ++TM + A+ I A
Sbjct: 45 KLYVGNLPWTCDSAQLAEICSDHGTVDVVEVIYDKISGRSRGFAFVTMATPEDAQAVINA 104
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+D+GGR ++V + + R + P+ + +KL+VGNLSW L
Sbjct: 105 LDGTDMGGRPLKVNYPQSQKDKPRVERS--ERPR-----DDANKLFVGNLSWGCDEAALY 157
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ F +GTVV A+V+ DR +R FGF++ S A +AA+ +L+G + GR + V
Sbjct: 158 SFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMESAAAANAAIENLDGAELDGRRLRV 213
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E PR A +L+V NL D + L F +GTV+ +V + ++G SRG G++TM S
Sbjct: 133 ERPRDDAN--KLFVGNLSWGCDEAALYSFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMES 190
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
+A AI LDG+++ GR +RV +
Sbjct: 191 AAAANAAIENLDGAELDGRRLRVNLA 216
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 108/219 (49%), Gaps = 16/219 (7%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRAR---PCE---LYVCNLPRSFDISELLEMFKPF 123
E+ + +D G+E + D S RA P E L+V NL + L +F+
Sbjct: 99 ENSLESQDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQA 158
Query: 124 GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
GTV EV N ET SRG G++TM S++ A+ A+ + D+ GR + V + SR
Sbjct: 159 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR- 217
Query: 184 RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
P + VYE ++YVGNL W V L F G VV ARV++DR+ +
Sbjct: 218 --------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 269
Query: 244 RVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 281
R FGF++ S E + A+S L+G + GR I V +R
Sbjct: 270 RGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 308
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 10/177 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F G V EV N E+G SRG G++TM +I A AI
Sbjct: 3 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 62
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP++ + S + YVGNL W + L
Sbjct: 63 TFNRYDISGRLLNVNRAAQRGSRVER------PPRQ---FASSFRAYVGNLPWQAEDSRL 113
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F G VV+A V++DR+ +R FGF++ +S + D+A+S L+G + GR + V
Sbjct: 114 VQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRV 170
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP + S L+++F G V++ V + ETG SRG G++TM S
Sbjct: 90 PRQFASSFRAYVGNLPWQAEDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKE 149
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG ++ GR +RV
Sbjct: 150 DLDSAISALDGQEMDGRPLRV 170
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 13/204 (6%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G+E + + + EP A+ +YV NLP + L ++F G V EV N ETG S
Sbjct: 95 GDEGEGEYAAVEPPEEAK---VYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQS 151
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM +I A AI + D+ GR + V + +R PP++ +
Sbjct: 152 RGFGFVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMER------PPRQ---FA 202
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ YVGNL W L F +G VV+A V++DR+ +R FGF++ S E D A
Sbjct: 203 PAFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDA 262
Query: 261 LS-LNGTDFRGRTIIVREGVDRTE 283
+S L+G + GR + V +R +
Sbjct: 263 ISALDGQELDGRPLRVNVAAERPQ 286
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S L+++F +G V++ V + ETG SRG G++TM S
Sbjct: 198 PRQFAPAFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKE 257
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 258 ELDDAISALDGQELDGRPLRVNVAAERPQR 287
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 108/219 (49%), Gaps = 16/219 (7%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRAR---PCE---LYVCNLPRSFDISELLEMFKPF 123
E+ + +D G+E + D S RA P E L+V NL + L +F+
Sbjct: 89 ENSLESQDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQA 148
Query: 124 GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
GTV EV N ET SRG G++TM S++ A+ A+ + D+ GR + V + SR
Sbjct: 149 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR- 207
Query: 184 RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
P + VYE ++YVGNL W V L F G VV ARV++DR+ +
Sbjct: 208 --------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 259
Query: 244 RVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 281
R FGF++ S E + A+S L+G + GR I V +R
Sbjct: 260 RGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 298
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM +I A+ A+
Sbjct: 117 AKVYVGNLPYDIDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 176
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DVGGR + V + +R + P + F S ++YVGNL W V L
Sbjct: 177 MFHRYDVGGRLLTVNKAAPRGAR-------VERPARDFGGSS-FRIYVGNLPWQVDDSRL 228
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
F G VV ARV++DR+ +R FGF++ +S E D A+ +L+G GR + V
Sbjct: 229 VQLFSEHGKVVDARVVYDRETGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 288
Query: 279 VDR 281
+R
Sbjct: 289 EER 291
>gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein, partial [Spinacia oleracea]
Length = 220
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 62/180 (34%), Positives = 102/180 (56%), Gaps = 13/180 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NLP + D +EL +F GTV VEV + TG SRG G++TM S+ + A
Sbjct: 38 LKIFVGNLPFNVDSAELAGLFGAAGTVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAAQ 97
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK---KIFVYESPHKLYVGNLSWAVKP 216
+ ++ GR +RV T ++ ++ P+ + + S ++++VGNLSW V
Sbjct: 98 QFNNYELDGRTLRV---------TEDSHKDMTLPRVESECDSFGSSNRVHVGNLSWKVDD 148
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ L+ F G VV A+V++DR +R FGF++++S E + A+ SL+G D GR+I V
Sbjct: 149 DALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIESLDGVDLNGRSIRV 208
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S+
Sbjct: 145 EPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLP 252
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRG 270
W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G + G
Sbjct: 253 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG 312
Query: 271 RTIIVREGVDR 281
R I V +R
Sbjct: 313 RAIRVNVAEER 323
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 20/209 (9%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G E D +EP S + +L+V NLP + + ++L ++FK G V VEV + TG S
Sbjct: 73 GQEEDVFGDGDEP-SFSPDLQLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRS 131
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-------------RFSIDMNSRTRNAE 187
RG G++TM +I + A +G ++ GR +RV R NS +R
Sbjct: 132 RGFGFVTMSTIEEVEAASQQFNGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGPG 191
Query: 188 ALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
A + ++S +++YVGNLSW V L + F G V+ A+V++DR ++ FG
Sbjct: 192 A-----RGGETFDSSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFG 246
Query: 248 FISFSSDAE-RDAALSLNGTDFRGRTIIV 275
F+++SS E DA SLNG + GR I V
Sbjct: 247 FVTYSSAEEVEDAVDSLNGAELDGRAIRV 275
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S+
Sbjct: 145 EPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLP 252
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRG 270
W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G + G
Sbjct: 253 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG 312
Query: 271 RTIIVREGVDR 281
R I V +R
Sbjct: 313 RAIRVNVAEER 323
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 111/207 (53%), Gaps = 30/207 (14%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
+D SS + S ++ +L+V NLP + D ++L +F+ G V VEV + TG SRG G
Sbjct: 77 EDVSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFG 136
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SP- 202
++TM SI+ + A +G ++ GR +RV NS PP++ + SP
Sbjct: 137 FVTMSSIDEVEAAAQQFNGYELEGRALRV------NSGP--------PPQRESSFSRSPR 182
Query: 203 -------------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
++LYVGNLSW+V L + F G VV A+V++DR+ +R FGF+
Sbjct: 183 FGGGGGGGESLEGNRLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFV 242
Query: 250 SFSSDAERDAAL-SLNGTDFRGRTIIV 275
++SS E + A+ SLNG + GR I V
Sbjct: 243 TYSSAEEVENAIDSLNGAELDGRAIRV 269
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VGNL + V L F G V V++D+ +R FGF++ SS D AA
Sbjct: 93 KLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQ 152
Query: 263 LNGTDFRGRTIIVREG 278
NG + GR + V G
Sbjct: 153 FNGYELEGRALRVNSG 168
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S+
Sbjct: 131 EPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 187
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL
Sbjct: 188 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLP 238
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRG 270
W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G + G
Sbjct: 239 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG 298
Query: 271 RTIIV 275
R I V
Sbjct: 299 RAIRV 303
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 96/189 (50%), Gaps = 27/189 (14%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+++V NLP S D +EL E+FK G V VEV + +TG SRG ++TM + A A+
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV-------------YESPHKLYV 207
+G + GR +RV + PPK F Y S ++++V
Sbjct: 174 FNGYEYQGRTLRV-------------NSGPPPPKDSFAPRGGFRNEKPSGNYNSANRVFV 220
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNL W L F G V+ A+V++DR+ +R FGF++ SS E + A+ SL+G+
Sbjct: 221 GNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGS 280
Query: 267 DFRGRTIIV 275
D GR I V
Sbjct: 281 DMDGRQIKV 289
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
K++VGNL W+V +L F G V V++DR+ +R F F++ ++ A+ D A+
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 263 LNGTDFRGRTIIVREG 278
NG +++GRT+ V G
Sbjct: 174 FNGYEYQGRTLRVNSG 189
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 95/180 (52%), Gaps = 4/180 (2%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S A A+
Sbjct: 78 LKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVE 137
Query: 160 ALDGSDVGGREMRVRFSIDM---NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G GR +RV S R +S +K+YVGNL+W V
Sbjct: 138 QFNGYTFQGRPLRVNCGPPPPRDESAPRAPRGGGGGGGGGSFVDSANKVYVGNLAWGVDN 197
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
L N F G V+ A+V++DR+ +R FGF+++ + AE + A+S L+G D GR I V
Sbjct: 198 STLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISNLDGIDLDGRQIRV 257
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 101/176 (57%), Gaps = 5/176 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+PR+ EL MF GTV+ EV + +G SR G++TM + AI +
Sbjct: 70 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 129
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ ++VGGR+++V + S N +A + FV +S +K+YVGNL+ V E L+
Sbjct: 130 LNDTEVGGRKIKVNVT---ESFLPNIDASAPESEPSFV-DSQYKVYVGNLAKKVTTEVLK 185
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
N F G V+SA V ++ +GF++FSS+ E +AA+S N T+ G+TI V
Sbjct: 186 NFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNNTELEGQTIRV 241
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
+D + EP ++YV NL + L F G VLS VSR P T S+G
Sbjct: 152 IDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 211
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRV 173
G++T S + A+ + +++ G+ +RV
Sbjct: 212 GFVTFSSEEEVEAAVSTFNNTELEGQTIRV 241
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 98/201 (48%), Gaps = 12/201 (5%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE 136
D V + +D V E ++YV NLP D L ++F+ G V EV N E
Sbjct: 93 DAVEASAAVEDEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYNRE 152
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI 196
T SRG G++TM ++ A A+ L DV GR + V + SR PP++
Sbjct: 153 TDRSRGFGFVTMSTVEEADKAVEMLHRYDVNGRLLTVNKAAPRGSRVDR------PPRQ- 205
Query: 197 FVYESPH-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
P ++YVGNL W V L F G VV ARV++DR+ +R FGF++ ++
Sbjct: 206 ---SGPSLRIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQD 262
Query: 256 ERDAAL-SLNGTDFRGRTIIV 275
E D A+ +L+G GR + V
Sbjct: 263 ELDDAIAALDGQSLDGRALRV 283
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 14/210 (6%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
V G +D+S ++P +LYVCNL S + L+ +F PFG V + +V+++ TG
Sbjct: 371 VAGFPSSEDNS-QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTG 429
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS----------IDMNSRTRNAEA 188
+S+G G++ S + A A+I L+G V GR++ VR S ++ S TRN+ A
Sbjct: 430 LSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNS-A 488
Query: 189 LISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
+ SP V E LYV N+ ++ + L F FG + ARV+ D + + +G
Sbjct: 489 VESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYG 548
Query: 248 FISFS-SDAERDAALSLNGTDFRGRTIIVR 276
FI F+ S++ A ++NG G IIVR
Sbjct: 549 FIKFTDSESATKAIAAMNGALVGGEMIIVR 578
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 17/180 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ V + TG+S+G G++ A AI +
Sbjct: 298 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 357
Query: 162 DGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V GR + VR S + NS+ + E ++ KLYV NLS ++ +
Sbjct: 358 NGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMA------------KLYVCNLSLSMNTD 405
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVR 276
L + F FG V +A+V D ++ +GF+ +SS +A + LNG GR I VR
Sbjct: 406 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 465
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYVCN+P S D +L+E+F PFG + V +P+T ++G G++ SA AI A+
Sbjct: 506 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 565
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-----KLYVGNLSWAVKP 216
+G+ VGG + VR A +SP I ++ +LY+ NL ++
Sbjct: 566 NGALVGGEMIIVRV------------AGLSPSASISAVQTTQDINKSRLYITNLPRSMTA 613
Query: 217 EDLRNHFGRFGTV 229
+ + N F FG +
Sbjct: 614 DKMVNLFAPFGQI 626
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NLPRS +++ +F PFG + +V N E + + SA A+ +
Sbjct: 602 LYITNLPRSMTADKMVNLFAPFGQI--TKVLMNLEYSL------VWYADAPSATKAVQHM 653
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG V G+ + V+ S T ++A P K+I + LYVG + ++ + +
Sbjct: 654 DGYMVEGKRLVVKRS--ELCTTNASQAGGKPIKEIDMA----NLYVGRVPSSLTEDQFID 707
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276
F FG VV AR+ ++ +G + F + + AA+ L+G G + VR
Sbjct: 708 LFRPFGRVVQARMFRFQR------YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVR 757
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP + L+++F P G + +V TG+S+G G++ SA A+ +
Sbjct: 789 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 848
Query: 162 DGSDVGGREMRVRFS 176
+G + G + VR +
Sbjct: 849 NGYPLDGHVLEVRIA 863
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 103/197 (52%), Gaps = 31/197 (15%)
Query: 93 PRSRA----RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PRSR P L+V NLP ++ EL ++F G V ++ + T SRG ++TM
Sbjct: 101 PRSRPPRGDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTM 160
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRF----------SIDMNSRTRNAEALISPPKKIFV 198
+ A AI DG+ +GGR RV + ++ M+ R R+
Sbjct: 161 ATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRD------------- 207
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHF-GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
+ +K+Y GNL W V+ + LRN F GR G ++ ARV+ +R+ +R FGF+SFS+ +
Sbjct: 208 -DGTYKIYAGNLGWGVRADTLRNVFEGRAG-LLDARVIFERETGRSRGFGFVSFSTAEDA 265
Query: 258 DAAL-SLNGTDFRGRTI 273
AAL SL+G + GR++
Sbjct: 266 QAALESLDGVELEGRSL 282
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L +F+ +L V ETG SRG G+++ + A+ A+ +
Sbjct: 212 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 271
Query: 161 LDGSDVGGREMRV 173
LDG ++ GR +R+
Sbjct: 272 LDGVELEGRSLRL 284
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 106/212 (50%), Gaps = 21/212 (9%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
++ S A +LYV NL S D L + F FG V + EV + E+G SRG ++TM S
Sbjct: 81 DQATSTAASTKLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAFVTMAS 140
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS-----------PPKKIFVY 199
++A+ A LDG+++ GR +RV F R AE P+
Sbjct: 141 PDAAEKARRGLDGTELAGRAIRVNFPQPKGERAPRAERGERSERSERSERTYTPRGDGEA 200
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
++LYVGNL W++ L + F FGTV ARV+ DR +R F F++ S+ E +
Sbjct: 201 GDANRLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANE 260
Query: 260 ALS-LNGTDFRGRTIIV---------REGVDR 281
A++ L+G + GRTI V REG +R
Sbjct: 261 AMANLDGEEIGGRTIRVNLATKSSGNREGRER 292
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 95/185 (51%), Gaps = 13/185 (7%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S+
Sbjct: 126 EPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 182
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL
Sbjct: 183 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLP 233
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRG 270
W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G + G
Sbjct: 234 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG 293
Query: 271 RTIIV 275
R I V
Sbjct: 294 RAIRV 298
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 18/218 (8%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
++++DD V E + +L+V NLP S D + L +F+ G V VEV + +G SR
Sbjct: 70 DQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSR 129
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRV-----------------RFSIDMNSRTR 184
G G++TM + + A +G ++ GR +RV R R
Sbjct: 130 GFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGR 189
Query: 185 NAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + + +S +++YVGNLSW V L+ F G VV A+V++DR +R
Sbjct: 190 DGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSR 249
Query: 245 VFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
FGF+++SS E DA SLNG D GR+I V +R
Sbjct: 250 GFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 14/213 (6%)
Query: 76 KDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
K V G +D+S ++P +LYVCNL S + L+ +F PFG V + +V+++
Sbjct: 281 KVRVTGFPSSEDNS-QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDH 339
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS----------IDMNSRTRN 185
TG+S+G G++ S + A A+I L+G V GR++ VR S ++ S TRN
Sbjct: 340 TTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRN 399
Query: 186 AEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ A+ SP V E LYV N+ ++ + L F FG + ARV+ D + +
Sbjct: 400 S-AVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 458
Query: 245 VFGFISFS-SDAERDAALSLNGTDFRGRTIIVR 276
+GFI F+ S++ A ++NG G IIVR
Sbjct: 459 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVR 491
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 17/180 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ V + TG+S+G G++ A AI +
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 162 DGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V G ++VR S + NS+ + E ++ KLYV NLS ++ +
Sbjct: 271 NGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMA------------KLYVCNLSLSMNTD 318
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVR 276
L + F FG V +A+V D ++ +GF+ +SS +A + LNG GR I VR
Sbjct: 319 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 378
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 22/153 (14%)
Query: 87 DSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
+S+VE P + E LYVCN+P S D +L+E+F PFG + V +P+T ++
Sbjct: 399 NSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 458
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G G++ SA AI A++G+ VGG + VR A +SP I ++
Sbjct: 459 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVRV------------AGLSPSASISAVQT 506
Query: 202 PH-----KLYVGNLSWAVKPEDLRNHFGRFGTV 229
+LY+ NL ++ + + N F FG +
Sbjct: 507 TQDINKSRLYITNLPRSMTADKMVNLFAPFGQI 539
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NLPRS +++ +F PFG + +V N E + + SA A+ +
Sbjct: 515 LYITNLPRSMTADKMVNLFAPFGQI--TKVLMNLEYSL------VWYADAPSATKAVQHM 566
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG V G+ + V+ S T ++A P K+I + LYVG + ++ + +
Sbjct: 567 DGYMVEGKRLVVKRS--ELCTTNASQAGGKPIKEIDMA----NLYVGRVPSSLTEDQFID 620
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276
F FG VV AR+ ++ +G + F + + AA+ L+G G + VR
Sbjct: 621 LFRPFGRVVQARMFRFQR------YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVR 670
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP + L+++F P G + +V TG+S+G G++ SA A+ +
Sbjct: 702 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 761
Query: 162 DGSDVGGREMRVRFS 176
+G + G + VR +
Sbjct: 762 NGYPLDGHVLEVRIA 776
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 107/206 (51%), Gaps = 13/206 (6%)
Query: 83 EVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
E D+D +E P +L+V NLP + D + L +F+ G V VEV + TG SR
Sbjct: 72 EQDEDVLSDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSR 131
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRV--------RFSIDM---NSRTRNAEALI 190
G G++TM ++ + A +G ++ GR++RV R + + NS R
Sbjct: 132 GFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENSNFRGENTNF 191
Query: 191 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
P+ S +++YVGNLSW V L F G V ARV++DR+ +R FGF++
Sbjct: 192 RGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVT 251
Query: 251 FSSDAERDAAL-SLNGTDFRGRTIIV 275
++S E + A+ SL+G D GR+I V
Sbjct: 252 YNSAEEVNRAIESLDGVDLNGRSIRV 277
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 14/213 (6%)
Query: 76 KDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
K V G +D+S ++P +LYVCNL S + L+ +F PFG V + +V+++
Sbjct: 365 KVRVTGFPSSEDNS-QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDH 423
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS----------IDMNSRTRN 185
TG+S+G G++ S + A A+I L+G V GR++ VR S ++ S TRN
Sbjct: 424 TTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRN 483
Query: 186 AEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ A+ SP V E LYV N+ ++ + L F FG + ARV+ D + +
Sbjct: 484 S-AVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 542
Query: 245 VFGFISFS-SDAERDAALSLNGTDFRGRTIIVR 276
+GFI F+ S++ A ++NG G IIVR
Sbjct: 543 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVR 575
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 17/180 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ V + TG+S+G G++ A AI +
Sbjct: 295 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 354
Query: 162 DGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V G ++VR S + NS+ + E ++ KLYV NLS ++ +
Sbjct: 355 NGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMA------------KLYVCNLSLSMNTD 402
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVR 276
L + F FG V +A+V D ++ +GF+ +SS +A + LNG GR I VR
Sbjct: 403 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 462
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYVCN+P S D +L+E+F PFG + V +P+T ++G G++ SA AI A+
Sbjct: 503 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 562
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-----KLYVGNLSWAVKP 216
+G+ VGG + VR A +SP I ++ +LY+ NL ++
Sbjct: 563 NGALVGGEMIIVRV------------AGLSPSASISAVQTTQDINKSRLYITNLPRSMTA 610
Query: 217 EDLRNHFGRFGTV 229
+ + N F FG +
Sbjct: 611 DKMVNLFAPFGQI 623
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NLPRS +++ +F PFG + +V N E + + SA A+ +
Sbjct: 599 LYITNLPRSMTADKMVNLFAPFGQI--TKVLMNLEYSL------VWYADAPSATKAVQHM 650
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG V G+ + V+ S T ++A P K+I + LYVG + ++ + +
Sbjct: 651 DGYMVEGKRLVVKRS--ELCTTNASQAGGKPIKEIDMA----NLYVGRVPSSLTEDQFID 704
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276
F FG VV AR+ ++ +G + F + + AA+ L+G G + VR
Sbjct: 705 LFRPFGRVVQARMFRFQR------YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVR 754
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP + L+++F P G + +V TG+S+G G++ SA A+ +
Sbjct: 786 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 845
Query: 162 DGSDVGGREMRVRFS 176
+G + G + VR +
Sbjct: 846 NGYPLDGHVLEVRIA 860
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 101/179 (56%), Gaps = 5/179 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+PR+ EL MF GTV EV + TG SR G++TM + A AI +
Sbjct: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ ++VGGR+++V + S N + P+ +FV +S +K+YVGNL+ +V E L+
Sbjct: 131 LNETEVGGRKIKVNVT---ESFLPNIDRSAPEPEPVFV-DSQYKVYVGNLAKSVTTEMLK 186
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREG 278
N F G V+SA V ++ +GF++FSS+ E AA+S N + G+ I V +
Sbjct: 187 NFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVSTFNNAELEGQPIRVNKA 245
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
gi|297327336|gb|EFH57756.1| hypothetical protein ARALYDRAFT_482714 [Arabidopsis lyrata subsp.
lyrata]
Length = 289
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 107/219 (48%), Gaps = 37/219 (16%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
D + + +S + +L+V NLP + D ++L ++F+ G V VEV + TG SRG G++
Sbjct: 78 DDAAPQQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFV 137
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK----------- 195
TM S++ + A +G ++ GR +RV A PPK+
Sbjct: 138 TMSSVSEVEAAANQFNGYELDGRPLRV-------------NAGPPPPKREDGFSRGPRSS 184
Query: 196 ------------IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
S +++YVGNLSW V L + F G VV ARV++DR +
Sbjct: 185 FGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRS 244
Query: 244 RVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
+ FGF++++S E ++A SLNG D GR I V E R
Sbjct: 245 KGFGFVTYNSSQEVQNAINSLNGADLDGRQIRVSEAEAR 283
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L +F G V+ V + ++G S+G G++T S +NAI +L
Sbjct: 206 VYVGNLSWGVDDMALESLFAEQGKVVEARVIYDRDSGRSKGFGFVTYNSSQEVQNAINSL 265
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
+G+D+ GR++RV +EA PP++ F
Sbjct: 266 NGADLDGRQIRV------------SEAEARPPRRQF 289
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 14/205 (6%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GG ++VE P ++YV NLP D L ++F G V EV N ETG
Sbjct: 92 GGEGEGQYAAVEPPEE----AKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQ 147
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM ++ A AI + D+ GR + V + +R + +P
Sbjct: 148 SRGFGFVTMSTVEEADKAIEMFNRYDISGRLLNVNRASSRGTRMERPQRQFAP------- 200
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ YVGNL W V L F G VV A+V++DR+ +R FGF+S S E +
Sbjct: 201 --AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELND 258
Query: 260 ALS-LNGTDFRGRTIIVREGVDRTE 283
A+S L+G + GR + V +R +
Sbjct: 259 AISALDGQELDGRPLRVNVAAERPQ 283
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 90 VEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+E P+ + P YV NLP D S L+++F G V+ +V + ETG SRG G+++M
Sbjct: 191 MERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSM 250
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
S +AI ALDG ++ GR +RV + + R
Sbjct: 251 VSKEELNDAISALDGQELDGRPLRVNVAAERPQR 284
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 102/198 (51%), Gaps = 13/198 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D+ +EP A+ L+V NLP D +L ++F+ G V EV N ET SRG G
Sbjct: 99 DEGEGFQEPPEDAK---LFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFG 155
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
++TM ++ A+ A+ +V GR + V + SR A P++ YE +
Sbjct: 156 FVTMSTVEEAEKAVELYHKFEVNGRFLTVNKAAPRGSRPERA------PRE---YEPSFR 206
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+YVGNL W V L F G V+SARV+ DR+ +R F F++ +S++E + A+ +L
Sbjct: 207 VYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGAL 266
Query: 264 NGTDFRGRTIIVREGVDR 281
+G GR I V +R
Sbjct: 267 DGQTLEGRAIRVNVAEER 284
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 31/197 (15%)
Query: 93 PRSRA----RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PRSR P L+V NLP ++ EL ++F G V ++ + T SRG ++TM
Sbjct: 101 PRSRPPRGDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTM 160
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRF----------SIDMNSRTRNAEALISPPKKIFV 198
+ A AI DG+ +GGR RV + ++ M+ R R+
Sbjct: 161 ATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRD------------- 207
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHF-GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
+ +K+Y GNL W V+ + LRN F GR G ++ ARV+ +R+ +R FGF+SFS+ +
Sbjct: 208 -DGTYKIYAGNLGWGVRADTLRNVFEGRAG-LLDARVIFERETGRSRGFGFVSFSTAEDA 265
Query: 258 DAAL-SLNGTDFRGRTI 273
AAL SL+G + GR +
Sbjct: 266 QAALESLDGVELEGRPL 282
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L +F+ +L V ETG SRG G+++ + A+ A+ +
Sbjct: 212 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 271
Query: 161 LDGSDVGGREMRVRFS 176
LDG ++ GR +R+ +
Sbjct: 272 LDGVELEGRPLRLSLA 287
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ +YV NLP +L +F GTV EV N ET SRG G++TM ++
Sbjct: 111 EPPEEAK---IYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTV 167
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ AI + ++ GR + V + SR PP+ V E +++YVGNL
Sbjct: 168 EESDKAIEMFNRYNLDGRLLTVNKAAPRGSRPER------PPR---VSEPSYRIYVGNLP 218
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRG 270
W V L F G VVSA+V+ D + +R FGF++ SS++E DA +L+G + G
Sbjct: 219 WGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAALDGQELDG 278
Query: 271 RTIIVREGVDR 281
R I V +R
Sbjct: 279 RAIRVNVAAER 289
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L E+F G V+S +V + ETG SRG G++TM S +
Sbjct: 203 PRVSEPSYRIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSES 262
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
+AI ALDG ++ GR +RV + + R+
Sbjct: 263 ELNDAIAALDGQELDGRAIRVNVAAERPRRS 293
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM +I A+ A+
Sbjct: 116 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 175
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DV GR + V + +R PP+ S ++YVGNL W V L
Sbjct: 176 MFHRYDVNGRLLTVNKAAPRGARVER------PPRD---SGSSFRIYVGNLPWQVDDSRL 226
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
F G VV ARV++DR +R FGF++ +S E D A+ +L+G GR + V
Sbjct: 227 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 286
Query: 279 VDR 281
+R
Sbjct: 287 EER 289
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+E+F G V+ V + +TG SRG G++TM S
Sbjct: 203 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 262
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 263 ELDDAIAALDGQSLEGRALRV 283
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 93/180 (51%), Gaps = 4/180 (2%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S A A+
Sbjct: 77 LKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVE 136
Query: 160 ALDGSDVGGREMRVRFSIDM---NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G GR +RV S R +S +K+YVGNL+W V
Sbjct: 137 QFNGYTFQGRPLRVNCGPPPPRDGSAPRAPRGGGGGGGGGSFVDSGNKVYVGNLAWGVDN 196
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
L N F G V+ A+V++DR +R FGF+++ S E + A+S L+G D GR I V
Sbjct: 197 STLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISNLDGIDLDGRQIRV 256
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 97/204 (47%), Gaps = 13/204 (6%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G E + + EP A+ +YV NLP D L ++F G V EV N ETG S
Sbjct: 92 GGEGEGQYAAVEPPEEAK---VYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQS 148
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM ++ A AI D+ GR + V + +R + +P
Sbjct: 149 RGFGFVTMSTVEEADKAIEMFSRYDISGRLLNVNRASSRGTRMERPQRQFAP-------- 200
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ YVGNL W V L F G VV A+V++DR+ +R FGF+S S E + A
Sbjct: 201 -AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDA 259
Query: 261 LS-LNGTDFRGRTIIVREGVDRTE 283
+S L+G + GR + V +R +
Sbjct: 260 ISALDGQELDGRPLRVNVAAERPQ 283
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 90 VEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+E P+ + P YV NLP D S L+++F G V+ +V + ETG SRG G+++M
Sbjct: 191 MERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSM 250
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
S +AI ALDG ++ GR +RV + + R
Sbjct: 251 VSKEELNDAISALDGQELDGRPLRVNVAAERPQR 284
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 4/179 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYVCNLP +L ++F P+G V SV+V R+ TG+S+G G++ A +AI
Sbjct: 320 KLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQ 379
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDL 219
L+G + G++M VR + +S + + IS E +YV NL + + L
Sbjct: 380 LNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKL 439
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVR 276
N F +G V SA+V D ++ +GF+ FS DA A + LNG GR I+VR
Sbjct: 440 LNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAH-AVIELNGCLVEGRKILVR 497
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S +L+E+F PFG ++ V + TG S+G G++ A AI +
Sbjct: 231 LFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHM 290
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G V GR + VR + S E +S KLYV NL + + L +
Sbjct: 291 NGRMVEGRMLEVRLA-GAPSSGSTKEMDMS------------KLYVCNLPLLLHEDKLHD 337
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276
F +G V S +V+ D ++ +GF+ +S A+ LNG G+ + VR
Sbjct: 338 LFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNGHLIEGKKMEVR 393
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 27/183 (14%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFG----TVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
C LYV NLP++ +L+ +F PFG V+ E S ++ INSA
Sbjct: 623 CRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAEYS------------FVLYADINSAA 670
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAV 214
A+ +DG + G+ + V+ S + + A++ S V E LYVG + AV
Sbjct: 671 KALKHMDGYLIEGKRLVVKGSEPLPANA--AQSACSQSGSKLVKEIDMANLYVGRVPSAV 728
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
E L F +G +V A+ + +G I +++ + AA+ L+G G T+
Sbjct: 729 TCEQLVQIFCLYGEIVQAK-------KFDAGYGMIRYANASSAAAAIDHLDGYQIGGSTL 781
Query: 274 IVR 276
+VR
Sbjct: 782 VVR 784
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTV---LSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
LYVCN+P S + ++L+E+F PFG + + VE S N S+G G++ + A A+
Sbjct: 522 LYVCNIPSSMNKAKLVELFLPFGRITHAMVVEQSNNS----SKGYGFVKFADSHCAAEAV 577
Query: 159 IALDGSDVGGREMRVRFS 176
++G+ + G + VR +
Sbjct: 578 AMMNGALIEGETISVRVA 595
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV LP +L+E+F P G + +V + TG+S+G G++ SA AI +
Sbjct: 816 LYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHM 875
Query: 162 DGSDVGGREMRVR 174
+G + G + VR
Sbjct: 876 NGYPLDGHMLAVR 888
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 18/181 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S+ + A+
Sbjct: 86 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVE 145
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVK 215
+G + GR +RV NS PP++ +P +++YVGNLSW V
Sbjct: 146 QFNGYILDGRSLRV------NSGP-------PPPREQSSQRAPRGEANRVYVGNLSWGVD 192
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTII 274
L N F G V+ A+V++DR+ +R FGF+++ S E + A+S L+G D GR I
Sbjct: 193 NAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIR 252
Query: 275 V 275
V
Sbjct: 253 V 253
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 15/147 (10%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V + EA V ++ NG + N G +
Sbjct: 114 MVEVIYDKLTG---RSRGFGFVTMSSVEEVEAAV--EQFNGYILDGRSLRVNSGPPPPRE 168
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS PR A +YV NL D + L +F G VL +V + E+G SRG G++
Sbjct: 169 QSSQRAPRGEAN--RVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFV 226
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NA+ LDG+D+ GR++RV
Sbjct: 227 TYGSAEEVENAVSNLDGADMDGRQIRV 253
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 101/215 (46%), Gaps = 26/215 (12%)
Query: 77 DNVGGNEVDDDSSVEEPRSRA--------------RPCELYVCNLPRSFDISELLEMFKP 122
D+ G E+ DD SVE + ++YV NLP D L ++F
Sbjct: 88 DDEGAGELVDDHSVEVSAAVEDEVEEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFDQ 147
Query: 123 FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
G V EV N ET SRG G++TM ++ A+ A+ DV GR + V + SR
Sbjct: 148 AGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEMFHRYDVNGRLLTVNKAAPRGSR 207
Query: 183 TRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
PP++ P ++YVGNL W V L F G VV ARV++DR+
Sbjct: 208 VDR------PPRQ----SGPSLRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETG 257
Query: 242 TTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+R FGF++ +S E D A+ +L+G GR + V
Sbjct: 258 RSRGFGFVTMASQDELDDAIAALDGQSLDGRALRV 292
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 99/181 (54%), Gaps = 18/181 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S+ + A+
Sbjct: 86 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVE 145
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVK 215
+G + GR +RV NS PP++ +P +++YVGNLSW V
Sbjct: 146 QFNGYILDGRSLRV------NSGP-------PPPREQSSRRAPRGEANRVYVGNLSWGVD 192
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTII 274
L N F G V+ A+V++DR+ +R FGF+++ S E + A+S L+G D GR I
Sbjct: 193 NAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIR 252
Query: 275 V 275
V
Sbjct: 253 V 253
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 15/147 (10%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V + EA V ++ NG + N G +
Sbjct: 114 MVEVIYDKLTG---RSRGFGFVTMSSVEEVEAAV--EQFNGYILDGRSLRVNSGPPPPRE 168
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS PR A +YV NL D + L +F G VL +V + E+G SRG G++
Sbjct: 169 QSSRRAPRGEAN--RVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFV 226
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NA+ LDG+D+ GR++RV
Sbjct: 227 TYGSAEEVENAVSNLDGADMDGRQIRV 253
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EEP A+ L+V NLP D +L +F+ GTV EV N ET SRG G++TM +
Sbjct: 146 EEPNEDAK---LFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMST 202
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ A+ A+ + D+ GR + V + SR P +I YVGNL
Sbjct: 203 VEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRI---------YVGNL 253
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFR 269
W V L F G VV ARVL+DR +R FGF++ + + DA +L+G
Sbjct: 254 PWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLD 313
Query: 270 GRTIIVREGVDR 281
GR I V +R
Sbjct: 314 GRAIRVNVAEER 325
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 97/191 (50%), Gaps = 29/191 (15%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP + D ++L +F+ G+V VEV + TG SRG G++TM + A+
Sbjct: 85 KLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVEQ 144
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV---------------YESPHKL 205
+G GR +RV NS PP+ F ++S +KL
Sbjct: 145 FNGYTFQGRPLRV------NSGP-------PPPRDEFAPRTPRGMGGGGGGGSFDSGNKL 191
Query: 206 YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LN 264
YVGNLSW V L N F G V+ A+V++DR +R FGF+++ S E + A+S L+
Sbjct: 192 YVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLD 251
Query: 265 GTDFRGRTIIV 275
G D GR I V
Sbjct: 252 GVDLDGRQIRV 262
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM +I A+ A+
Sbjct: 115 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 174
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DV GR + V + +R PP+ S ++YVGNL W V L
Sbjct: 175 MFHRYDVNGRLLTVNKAAPRGARVER------PPRD---SGSSFRIYVGNLPWQVDDSRL 225
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
F G VV ARV++DR +R FGF++ +S E D A+ +L+G GR + V
Sbjct: 226 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQPELDDAIAALDGQSLEGRALRVNVA 285
Query: 279 VDR 281
+R
Sbjct: 286 EER 288
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+E+F G V+ V + +TG SRG G++TM S
Sbjct: 202 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQP 261
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 262 ELDDAIAALDGQSLEGRALRV 282
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 109/210 (51%), Gaps = 23/210 (10%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
G EVD D S S A +L+V NLP + D ++L +F+ G V VEV + TG
Sbjct: 78 GTLEVDGDDS-----SYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGR 132
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR-------TRNAEALISP 192
SRG G++TM ++ + A +G ++ GR +RV + R +RNA
Sbjct: 133 SRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSFRGSRNASR---- 188
Query: 193 PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
+++ ++++V NL+W V L N F G V+ A+V++DR +R FGF++++
Sbjct: 189 ------FDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYN 242
Query: 253 SDAERDAAL-SLNGTDFRGRTIIVREGVDR 281
S E + A+ SL+G D GR I V + R
Sbjct: 243 SAEEVNEAIQSLDGVDLDGRPIRVTQAEAR 272
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 110/196 (56%), Gaps = 22/196 (11%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTV-LSVEVSRNPETGISRGC 143
DDD +E+ + A C +YV NL S +L + + G V L+ + N G S+GC
Sbjct: 76 DDDVDMEQ--AAAVGCRVYVGNLSWSIKWQDLKDHMQAAGPVELATVLESN---GRSKGC 130
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS-PPKKIFVYESP 202
G +T + +A+NAI L+ +++GGR++ VR R A+ + + PK+ F
Sbjct: 131 GIVTYETEEAAQNAIATLNDTELGGRKIFVR-------EDREAQPVSAVKPKRGF----- 178
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
++YVGNLSW VK ++L++H + GTVV A VL + G+ ++ G + +++ E A++
Sbjct: 179 -RVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEEPNGR-SKGCGLVEYATQEEAAKAIA 236
Query: 263 -LNGTDFRGRTIIVRE 277
LN T+ GR I VRE
Sbjct: 237 ELNNTELEGRLIFVRE 252
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 9/178 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + EL + K GTV+ +V P G S+GCG + + A AI L
Sbjct: 180 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLEEP-NGRSKGCGLVEYATQEEAAKAIAEL 238
Query: 162 DGSDVGGREMRVRFSID--MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ +++ GR + VR + S ++ A+ +P +LYVGNL W + L
Sbjct: 239 NNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGS----GEGRQLYVGNLPWETNWQQL 294
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
++ F G V A + G+ +R FG I +++ A+ A+ LNG + GR I VR
Sbjct: 295 KDLFRTVGDVERADIAEYPDGR-SRGFGIIRYTNAADAWQAIERLNGLEIEGRLIEVR 351
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +LYV NLP + +L ++F+ G V +++ P+ G SRG G + +
Sbjct: 271 PRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPD-GRSRGFGIIRYTNAA 329
Query: 153 SAKNAIIALDGSDVGGREMRVRF 175
A AI L+G ++ GR + VR
Sbjct: 330 DAWQAIERLNGLEIEGRLIEVRL 352
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 92/192 (47%), Gaps = 13/192 (6%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EEP A+ L+V NLP D +L +F+ GTV EV N ET SRG G++TM +
Sbjct: 140 EEPNEDAK---LFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMST 196
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ A+ A+ + D+ GR + V + SR P +I YVGNL
Sbjct: 197 VEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRI---------YVGNL 247
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFR 269
W V L F G VV ARVL+DR +R FGF++ + + DA +L+G
Sbjct: 248 PWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLD 307
Query: 270 GRTIIVREGVDR 281
GR I V +R
Sbjct: 308 GRAIRVNVAEER 319
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 7/187 (3%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S +R +L+V NLP S D + L E+F+ G V VEV + TG SRG G++TM S+ A
Sbjct: 84 SFSRDLKLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEA 143
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNL 210
+ A +G ++ GR +RV S +R +A P ++++VGNL
Sbjct: 144 EAAAKQFNGYELDGRSLRVN-SGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVGNL 202
Query: 211 SWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF 268
+W V L + F G V+ ARV++DR+ +R FGF++F S D + A SL+G D
Sbjct: 203 AWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDGVDL 262
Query: 269 RGRTIIV 275
GR I V
Sbjct: 263 NGRAIRV 269
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 91/183 (49%), Gaps = 10/183 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM +I A+ A+
Sbjct: 116 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 175
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DV GR + V + +R PP+ S ++YVGNL W V L
Sbjct: 176 MFHRYDVNGRLLTVNKAAPRGARVER------PPRD---SGSSFRIYVGNLPWQVDDSRL 226
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
F G VV A+V++DR +R FGF++ +S E D A+ +L+G GR + V
Sbjct: 227 VELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVA 286
Query: 279 VDR 281
+R
Sbjct: 287 EER 289
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+E+F G V+ +V + +TG SRG G++TM S
Sbjct: 203 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQE 262
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 263 ELDDAIAALDGQSLEGRALRV 283
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 93/183 (50%), Gaps = 10/183 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM ++ A+ A+
Sbjct: 143 AKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 202
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DV GR + V + +R PP++ + ++YVGNL W V L
Sbjct: 203 MFHRYDVDGRLLTVNKAAPRGARVER------PPRQ---FGPSFRIYVGNLPWQVDDSRL 253
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
F G VV ARV++DR+ +R FGF++ ++ E D A+ +L+G GR + V
Sbjct: 254 VQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRVNVA 313
Query: 279 VDR 281
+R
Sbjct: 314 EER 316
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+++F G V+ V + ETG SRG G++TM +
Sbjct: 230 PRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQE 289
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 290 ELDDAIAALDGQSLDGRALRV 310
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
gi|195649373|gb|ACG44154.1| ribonucleoprotein A [Zea mays]
gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A [Zea mays]
Length = 268
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 97/180 (53%), Gaps = 5/180 (2%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S A+ A+
Sbjct: 79 LKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAEAAVE 138
Query: 160 ALDGSDVGGREMRVRFSIDM---NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G GR++RV S R FV +S +K+YVGNL+W V
Sbjct: 139 QFNGYAFQGRQLRVNCGPPPPRDESTPRAPRGGGGGGGGGFV-DSANKVYVGNLAWGVDN 197
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
L N F G V+ A+V++DR +R FGF+++ S E + A+S L+G D GR I V
Sbjct: 198 STLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNAISNLDGIDLDGRQIRV 257
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM ++ A+ A+
Sbjct: 7 AKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 66
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DV GR + V + +R PP++ + ++YVGNL W V L
Sbjct: 67 MFHRYDVDGRLLTVNKAAPRGARVER------PPRQ---FGPSFRIYVGNLPWQVDDSRL 117
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F G VV ARV++DR+ +R FGF++ ++ E D A+ +L+G GR + V
Sbjct: 118 VQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDGQSLDGRALRV 174
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+++F G V+ V + ETG SRG G++TM +
Sbjct: 94 PRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQE 153
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 154 ELDDAIAALDGQSLDGRALRV 174
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 22/183 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+YV NL + D EL ++ + G + VE V + ETG SRG GY+T+ SI+ A+ A+
Sbjct: 3 IYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQK 62
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK------IFVYESPHKLYVGNLSWAV 214
LDG V GR ++ FS P KK + V S K+++GNL W V
Sbjct: 63 LDGHIVQGRALKASFS--------------QPYKKAGKEGPVEVAASHTKVFIGNLPWGV 108
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
L F G VV A++++DR +R FGF++ SS E D A+ SL+G D GR +
Sbjct: 109 DDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRL 168
Query: 274 IVR 276
V+
Sbjct: 169 RVK 171
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A ++++ NLP D L E F+ G V+ ++ + +TG SRG G++T+ S A
Sbjct: 94 ASHTKVFIGNLPWGVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADE 153
Query: 157 AIIALDGSDVGGREMRVRFS 176
A+ +LDG+D GR +RV+ +
Sbjct: 154 AVKSLDGADCDGRRLRVKLA 173
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSA-RVLHDRKGQTTRVFGFISFSS-DAERDAAL 261
++YVGNLSW E+L + G + V+ DR+ +R FG+++ +S D + A
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 262 SLNGTDFRGRTI 273
L+G +GR +
Sbjct: 62 KLDGHIVQGRAL 73
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 138/289 (47%), Gaps = 28/289 (9%)
Query: 2 AAATGFLTTSSSLFTK--ITPPATPKRFGF-TSLPTLI---NFQYPKLSSCWSRSHPAGF 55
AA F +T +++ ++P + P S PT + NF P L+ RS F
Sbjct: 8 AATLSFFSTHHPSYSRFFLSPKSPPLSLNLHISNPTPLISHNFPQPSLTQNHPRSKSLCF 67
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
+ + + V E V + E + ++E + + L+V NLP SF + +
Sbjct: 68 Q-LCSTVQEVTVEITPE--------------EEEIQEANLKRK---LFVVNLPWSFSVVD 109
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
+ ++F GTV VE+ + + G SRG ++TM + A+ AI + +V GR +RV F
Sbjct: 110 IKDLFGQCGTVSDVEIIKQ-KNGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEF 168
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
+ + R + L P I E+ HKLY+ NL+W V+ LR F VS+RV+
Sbjct: 169 AKRL--RRPPSPRLPGTPADIPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVV 226
Query: 236 HDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDRTE 283
D + +GF+SF++ E AA+S +G + GR I ++ D+ +
Sbjct: 227 FDGPAGRSSGYGFVSFATREEAVAAISAFSGKELMGRPIRLKFSEDKAD 275
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 107/200 (53%), Gaps = 5/200 (2%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
V G +D+S ++P +LYVCNL S + L+ +F PFG V + +V+++ TG
Sbjct: 284 VAGFPSSEDNS-QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTG 342
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+S+G G++ S + A A+I L+G V GR++ VR S + S N+ A+ SP V
Sbjct: 343 LSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS-GIPSTLPNS-AVESPSTTRTV 400
Query: 199 YE-SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAE 256
E LYV N+ ++ + L F FG + ARV+ D + + +GFI F+ S++
Sbjct: 401 KEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESA 460
Query: 257 RDAALSLNGTDFRGRTIIVR 276
A ++NG G IIVR
Sbjct: 461 TKAIAAMNGALVGGEMIIVR 480
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 17/180 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ V + TG+S+G G++ A AI +
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 162 DGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V GR + VR S + NS+ + E ++ KLYV NLS ++ +
Sbjct: 271 NGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMA------------KLYVCNLSLSMNTD 318
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVR 276
L + F FG V +A+V D ++ +GF+ +SS +A + LNG GR I VR
Sbjct: 319 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 378
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 22/153 (14%)
Query: 87 DSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
+S+VE P + E LYVCN+P S D +L+E+F PFG + V +P+T ++
Sbjct: 388 NSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 447
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G G++ SA AI A++G+ VGG + VR A +SP I ++
Sbjct: 448 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVRV------------AGLSPSASISAVQT 495
Query: 202 PH-----KLYVGNLSWAVKPEDLRNHFGRFGTV 229
+LY+ NL ++ + + N F FG +
Sbjct: 496 TQDINKSRLYITNLPRSMTADKMVNLFAPFGQI 528
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NLPRS +++ +F PFG + +V N E + + SA A+ +
Sbjct: 504 LYITNLPRSMTADKMVNLFAPFGQI--TKVLMNLEYSL------VWYADAPSAIKAVQHM 555
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG V G+ + V+ S T ++A P K+I + LYVG + ++ + +
Sbjct: 556 DGYMVEGKRLVVKRS--ELCTTNASQAGGKPIKEIDMA----NLYVGRVPSSLTEDQFID 609
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276
F FG VV AR+ ++ +G + F + + AA+ L+G G + VR
Sbjct: 610 LFRPFGRVVQARMFRFQR------YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVR 659
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP + L+++F P G + +V TG+S+G G++ SA A+ +
Sbjct: 691 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 750
Query: 162 DGSDVGGREMRVRFS 176
+G + G + VR +
Sbjct: 751 NGYPLDGHVLEVRIA 765
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 99/195 (50%), Gaps = 13/195 (6%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
+S EEP + +++V NLP D +L ++F+ GTV EV N +T SRG G++T
Sbjct: 113 ASFEEP---SEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVT 169
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
M + + A+ G ++ GR + V N+ R L P + S + YV
Sbjct: 170 MSTSEEVERAVNKFSGFELDGRLLTVN-----NAAPRGTPRLRQPR----TFNSGLRAYV 220
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGT 266
GNL W V L F G V SA+V++DR+ R FGF++ S++AE DA +L+G
Sbjct: 221 GNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDGQ 280
Query: 267 DFRGRTIIVREGVDR 281
F GR I V +R
Sbjct: 281 SFNGRAIRVNVAEER 295
>gi|255573485|ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 278
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 98/182 (53%), Gaps = 8/182 (4%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE + + +LYV NLP S + ++ +F GTV VE+ + + G SRG ++T+ S
Sbjct: 74 EETQETTQKRKLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIKQ-KNGRSRGFAFVTLAS 132
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
A+ AI LD +V GR +RV F+ + + + S E+ HK+YV NL
Sbjct: 133 GEEAQAAIDKLDSHEVSGRIIRVEFAKRLKPPSPPSPTGTSAR------ETRHKIYVSNL 186
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFR 269
+W V+ LR F + VS+RV+ D + +GF+SF++ E +AA+S L+G +
Sbjct: 187 AWKVRSTHLREFFSTNFSPVSSRVVFDSPTGRSSGYGFVSFATREEAEAAISALDGKELM 246
Query: 270 GR 271
GR
Sbjct: 247 GR 248
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 107/200 (53%), Gaps = 5/200 (2%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
V G +D+S ++P +LYVCNL S + L+ +F PFG V + +V+++ TG
Sbjct: 372 VAGFPSSEDNS-QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTG 430
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+S+G G++ S + A A+I L+G V GR++ VR S + S N+ A+ SP V
Sbjct: 431 LSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS-GIPSTLPNS-AVESPSTTRTV 488
Query: 199 YE-SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAE 256
E LYV N+ ++ + L F FG + ARV+ D + + +GFI F+ S++
Sbjct: 489 KEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESA 548
Query: 257 RDAALSLNGTDFRGRTIIVR 276
A ++NG G IIVR
Sbjct: 549 TKAIAAMNGALVGGEMIIVR 568
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 17/180 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ V + TG+S+G G++ A AI +
Sbjct: 299 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 358
Query: 162 DGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V GR + VR S + NS+ + E ++ KLYV NLS ++ +
Sbjct: 359 NGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMA------------KLYVCNLSLSMNTD 406
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVR 276
L + F FG V +A+V D ++ +GF+ +SS +A + LNG GR I VR
Sbjct: 407 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVR 466
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYVCN+P S D +L+E+F PFG + V +P+T ++G G++ SA AI A+
Sbjct: 496 LYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATKAIAAM 555
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-----KLYVGNLSWAVKP 216
+G+ VGG + VR A +SP I ++ +LY+ NL ++
Sbjct: 556 NGALVGGEMIIVRV------------AGLSPSASISAVQTTQDINKSRLYITNLPRSMTA 603
Query: 217 EDLRNHFGRFGTV 229
+ + N F FG +
Sbjct: 604 DKMVNLFAPFGQI 616
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 21/176 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NLPRS +++ +F PFG + +V N E + + SA A+ +
Sbjct: 592 LYITNLPRSMTADKMVNLFAPFGQI--TKVLMNLEYSL------VWYADAPSAIKAVQHM 643
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG V G+ + V+ S T ++A P K+I + LYVG + ++ + +
Sbjct: 644 DGYMVEGKRLVVKRS--ELCTTNASQAGGKPIKEIDMA----NLYVGRVPSSLTEDQFID 697
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276
F FG VV AR+ ++ +G + F + + AA+ L+G G + VR
Sbjct: 698 LFRPFGRVVQARMFRFQR------YGMVRFDNPSCAAAAIDHLDGYQIGGSILAVR 747
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP + L+++F P G + +V TG+S+G G++ SA A+ +
Sbjct: 779 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 838
Query: 162 DGSDVGGREMRVRFS 176
+G + G + VR +
Sbjct: 839 NGYPLDGHVLEVRIA 853
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 13/194 (6%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
S EP A+ ++V NLP D L +F+ G V EV N ET SRG G+++M
Sbjct: 140 SYSEPPEEAK---VFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSM 196
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
++ A+ A+ ++ GR + V + S+ PP+ V+E ++YVG
Sbjct: 197 STVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPER------PPR---VFEPAFRMYVG 247
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTD 267
NL W V L F G VV ARV+ DR+ +R FGF++ SS E DA + +G
Sbjct: 248 NLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQT 307
Query: 268 FRGRTIIVREGVDR 281
GRTI V +R
Sbjct: 308 LDGRTIRVNVAEER 321
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 100/197 (50%), Gaps = 31/197 (15%)
Query: 93 PRSRAR----PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PRSR P L+V NLP ++ EL ++F G V ++ + T SRG ++TM
Sbjct: 99 PRSRPTRGDDPGRLFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTM 158
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRF----------SIDMNSRTRNAEALISPPKKIFV 198
+ A AI DG+ +GGR RV + ++ M R R+
Sbjct: 159 ATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMAGRRRD------------- 205
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHF-GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
+ +K+Y GNL W V+ + LRN F GR G ++ ARV+ +R+ +R FGF+SF + +
Sbjct: 206 -DGTYKIYAGNLGWGVRADTLRNVFEGRAG-LLDARVIFERETGRSRGFGFVSFRTAEDA 263
Query: 258 DAAL-SLNGTDFRGRTI 273
AAL +L+G + GR +
Sbjct: 264 QAALEALDGVELEGRPL 280
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L +F+ +L V ETG SRG G+++ + A+ A+ A
Sbjct: 210 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQAALEA 269
Query: 161 LDGSDVGGREMRVRFS 176
LDG ++ GR +R+ +
Sbjct: 270 LDGVELEGRPLRLSLA 285
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 13/194 (6%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
S EP A+ ++V NLP D L +F+ G V EV N ET SRG G+++M
Sbjct: 119 SYSEPPEEAK---VFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSM 175
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
++ A+ A+ ++ GR + V + S+ PP+ V+E ++YVG
Sbjct: 176 STVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPER------PPR---VFEPAFRMYVG 226
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTD 267
NL W V L F G VV ARV+ DR+ +R FGF++ SS E DA + +G
Sbjct: 227 NLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQT 286
Query: 268 FRGRTIIVREGVDR 281
GRTI V +R
Sbjct: 287 LDGRTIRVNVAEER 300
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 111/231 (48%), Gaps = 16/231 (6%)
Query: 55 FRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSVEEPRSRARPCELYVCN 106
F S L ++ + N N GG EV + + EE + + +LY+ N
Sbjct: 41 FSSPLLSLNPTTPISPTSFNSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFN 100
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
LP S + ++ E+F GTV VE+ + + G SRG ++TM S + A+ AI D ++
Sbjct: 101 LPWSLSVVDIKELFGQCGTVSDVEIIKQ-KNGRSRGFAFVTMASPDEAQAAIQKFDSQEI 159
Query: 167 GGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRF 226
GR ++V F+ + E+ +KLYV NL+W V+ +LR+ F
Sbjct: 160 SGRVIKVEFAKRLKKPPPPKPPGPP------PGETVNKLYVSNLAWKVRSNNLRDFFSEN 213
Query: 227 GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276
++ARV+ D + +GF+SF++ E AL SL G + GR + ++
Sbjct: 214 FNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPLRLK 264
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL + L + F ++ V + G S G G+++ + A+ A+ +
Sbjct: 191 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 250
Query: 161 LDGSDVGGREMRVRFS 176
L+G ++ GR +R++FS
Sbjct: 251 LEGKELMGRPLRLKFS 266
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 100/184 (54%), Gaps = 4/184 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP SF + ++ ++F GTV VE+ + + G SRG ++TM + A+ AI
Sbjct: 95 KLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQ-KNGRSRGFAFVTMTTGEEAQAAIDK 153
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ +V GR +RV F+ + R + L P I E+ HKLY+ NL+W V+ LR
Sbjct: 154 FNSLEVSGRIIRVEFAKRL--RRPPSPRLPGTPADIPAGETRHKLYISNLAWKVRGSHLR 211
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F VS+RV+ D + +GF+SF++ E AA+S +G + GR I ++
Sbjct: 212 EFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISAFSGKELMGRPIRLKFSE 271
Query: 280 DRTE 283
D+ +
Sbjct: 272 DKAD 275
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 106/193 (54%), Gaps = 5/193 (2%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
V S+V E +LYV N+PR+ EL +MF GTV EV + T SR
Sbjct: 53 VSASSAVLEAPEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRF 112
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH 203
G++TM + A A+ AL+G++VG R+++V + S N + P+ +FV +S +
Sbjct: 113 GFVTMSTAEEANAAVEALNGTEVGDRKIKVNVT---ESFLPNIDRSAPEPEALFV-DSQY 168
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
K+YVGNL+ V E L+N F G ++SA V H ++ +GF++FSS+ E +AA+ +
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 228
Query: 263 LNGTDFRGRTIIV 275
N + G+ I V
Sbjct: 229 FNNAELEGQLIRV 241
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 103/196 (52%), Gaps = 8/196 (4%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
EV + + EE + + +LY+ NLP S + ++ E+F GTV VE+ + + G SR
Sbjct: 70 QEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQ-KNGRSR 128
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G ++TM S + A+ AI D ++ GR ++V F+ R + P E+
Sbjct: 129 GFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA------KRLKKPPPPKPPGPPPGET 182
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
+KLYV NL+W V+ +LR+ F ++ARV+ D + +GF+SF++ E AL
Sbjct: 183 VNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTAL 242
Query: 262 -SLNGTDFRGRTIIVR 276
SL G + GR + ++
Sbjct: 243 SSLEGKELMGRPLRLK 258
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL + L + F ++ V + G S G G+++ + A+ A+ +
Sbjct: 185 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 244
Query: 161 LDGSDVGGREMRVRFS 176
L+G ++ GR +R++FS
Sbjct: 245 LEGKELMGRPLRLKFS 260
>gi|299470875|emb|CBN78824.1| Protein for assembly of pre-ribosomal particles containing 18S rRNA
[Ectocarpus siliculosus]
Length = 517
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 9/193 (4%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
+ DD + ++++ ++Y+ LP ++ + FK G +++VE +NP+ G S G
Sbjct: 265 KADDAEEGDAKKAKSENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPD-GRSSG 323
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
Y+T S +A I LDG ++GGR +++ S + RN E + P V+
Sbjct: 324 TAYVTFDSAAAA-AKAIELDGQELGGRWLKIMMSFEKPDHARNGEPKVKPAGCTTVF--- 379
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+GNLSW++ + +R FG G + S R DR+ R FG + F DAA+
Sbjct: 380 ----IGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMK 435
Query: 263 LNGTDFRGRTIIV 275
L +D GR I V
Sbjct: 436 LANSDVMGRPIRV 448
>gi|303286031|ref|XP_003062305.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455822|gb|EEH53124.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 227
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 96/179 (53%), Gaps = 3/179 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +LYV NL D S L ++F + + V + TG SRG G++ + S A+ AI
Sbjct: 42 PVKLYVGNLSWGVDDSMLTDVFAEY-DASGIAVISDMNTGRSRGFGFVEVPSQEIAEKAI 100
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
LDG+DV GR +RV S +SR + E P++ K+Y GNLSW +
Sbjct: 101 AELDGADVDGRPIRVNISEARSSRREYDGERGERAPRERNYDFDARKVYFGNLSWGMDHL 160
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
DL++ G +G V +R++ DR+ +R FGF++ SS + + ++ LNG D GR + V
Sbjct: 161 DLQDLCGEYGEVADSRLITDRETGRSRGFGFVTMSSAEQAEKVVNGLNGQDVDGRVLRV 219
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 83 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
E D + PR R + +Y NL D +L ++ +G V + + ETG
Sbjct: 126 EYDGERGERAPRERNYDFDARKVYFGNLSWGMDHLDLQDLCGEYGEVADSRLITDRETGR 185
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
SRG G++TM S A+ + L+G DV GR +RV +
Sbjct: 186 SRGFGFVTMSSAEQAEKVVNGLNGQDVDGRVLRVNIA 222
>gi|255075095|ref|XP_002501222.1| predicted protein [Micromonas sp. RCC299]
gi|226516486|gb|ACO62480.1| predicted protein [Micromonas sp. RCC299]
Length = 199
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL L ++F +G V V + TG SRG G++T+ A I A
Sbjct: 18 KLYVGNLSWGVTNDSLADVFNQYGAS-DVTVVTDMNTGRSRGFGFVTVPDQAVADACIAA 76
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+DV GR +RV S+ R + ++ K+Y GNLSW + DL+
Sbjct: 77 LDGADVDGRAIRVNVSVAREDRPPRPDRPPRDGQRRGYDFDGRKVYFGNLSWGMDHLDLQ 136
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
+ G FGTV AR++ DR+ +R FGF++ S+ AE + ++ LNG D GR + V
Sbjct: 137 DLCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEVVNQLNGQDVDGRVLRV 192
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL D +L ++ FGTV + + ET SRG G++TM ++ A+ +
Sbjct: 120 KVYFGNLSWGMDHLDLQDLCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEVVNQ 179
Query: 161 LDGSDVGGREMRVRFS 176
L+G DV GR +RV +
Sbjct: 180 LNGQDVDGRVLRVNIA 195
>gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
Length = 292
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 109/229 (47%), Gaps = 18/229 (7%)
Query: 60 AVVDEEAVVVEDE--INGKDNVGGNEVDDDSSVEEPRSRARPCE---LYVCNLPRSFDIS 114
AV+DEE V + E +N +D +E S + P E LYV NLP D
Sbjct: 70 AVIDEEENVEKTEAAVNWED---ASEPQPSSGFGSEDGFSEPSEDVKLYVGNLPFDVDSE 126
Query: 115 ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174
+L MF G V EV N ET SRG G++TM ++ A A+ ++ GR + V
Sbjct: 127 KLANMFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEMFHSYELNGRLLTVN 186
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+ SR A P + ES YVGNL W V + L G V+SARV
Sbjct: 187 KAAPRGSRPEKAPREFCP----LLSES----YVGNLPWDVDNDRLEQLSSEHGKVLSARV 238
Query: 235 LHDRKGQTTRVFGFISFSSDAE-RDAAL-SLNGTDFRGRTIIVREGVDR 281
+ DR+ + +R FGF++ +S+ E DA L +L+G GR I V +R
Sbjct: 239 VSDRETERSRGFGFVTMASETEMNDATLGALDGESLEGRPIRVNVAEER 287
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 95/194 (48%), Gaps = 13/194 (6%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
S EP A+ ++V NLP D L +F+ G V EV N ET SRG G+++M
Sbjct: 935 SYSEPPEEAK---VFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSM 991
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
++ A+ A+ ++ GR + V + S+ PP+ V+E ++YVG
Sbjct: 992 STVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPER------PPR---VFEPAFRMYVG 1042
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTD 267
NL W V L F G VV ARV+ DR+ +R FGF++ SS E DA + +G
Sbjct: 1043 NLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQT 1102
Query: 268 FRGRTIIVREGVDR 281
GRTI V +R
Sbjct: 1103 LDGRTIRVNVAEER 1116
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 49 RSHPAGFRSVLAVVDEEAVV---VEDEINGKDNVGGNEVDDDSSVEEPRSRARPC-ELYV 104
RS GF S+ V + E V E++G+ S E P P +YV
Sbjct: 982 RSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYV 1041
Query: 105 CNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164
NLP D + L ++F G V+ V + ETG SRG G++TM S ++AI A DG
Sbjct: 1042 GNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQ 1101
Query: 165 DVGGREMRV 173
+ GR +RV
Sbjct: 1102 TLDGRTIRV 1110
>gi|412986787|emb|CCO15213.1| predicted protein [Bathycoccus prasinos]
Length = 260
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 98/192 (51%), Gaps = 7/192 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S E S +LY+ NL D L ++F + V V+ + TG SRG G
Sbjct: 59 DAESPAAESESSGGEVKLYIGNLSWDMDDQALNDLFSQYQASDCVIVT-DRNTGRSRGFG 117
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
+ T+ S A +AI AL+ SD GR+MRV S+ R A PK+ + + K
Sbjct: 118 FATVPSQEMADSAIAALNDSDQFGRQMRVVISLPPEERP----AREQRPKRNWDADG-RK 172
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSL 263
+Y GNLSW + DL++ FG V +R++ DR+ +R FGF++ SS+ E D L
Sbjct: 173 VYFGNLSWGMDHLDLQDLCAEFGNVDESRLITDRETGRSRGFGFVTMSSEKEAEDVVAQL 232
Query: 264 NGTDFRGRTIIV 275
NG D GR + V
Sbjct: 233 NGQDVDGRVLRV 244
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL D +L ++ FG V + + ETG SRG G++TM S A++ +
Sbjct: 172 KVYFGNLSWGMDHLDLQDLCAEFGNVDESRLITDRETGRSRGFGFVTMSSEKEAEDVVAQ 231
Query: 161 LDGSDVGGREMRVRFS 176
L+G DV GR +RV +
Sbjct: 232 LNGQDVDGRVLRVNIA 247
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 95/168 (56%), Gaps = 16/168 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ D +EL + + G V EV + +G SR ++TM ++ A AI L
Sbjct: 72 LYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKL 131
Query: 162 DGSDVGGREMRVR------FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G+++GGRE++V ++DM +L+ + F+ +SPHK+YVGNL+ V
Sbjct: 132 NGTEIGGREIKVNITEKPLLTLDM--------SLLQAEESQFI-DSPHKVYVGNLARTVT 182
Query: 216 PEDLRNHFG-RFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L F + G V+SA+V + FGF+SFSS+ + +AA+S
Sbjct: 183 TDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAIS 230
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSS-------------VEEPRS 95
RS F ++ V D A + +++NG + +GG E+ + + EE +
Sbjct: 109 RSRRFAFVTMKTVEDANAAI--EKLNGTE-IGGREIKVNITEKPLLTLDMSLLQAEESQF 165
Query: 96 RARPCELYVCNLPRSFDISELLEMF-KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
P ++YV NL R+ L + F + G VLS +VSR P T S G G+++ S
Sbjct: 166 IDSPHKVYVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDV 225
Query: 155 KNAIIALDGSDVGGREMRV 173
+ AI + + + + G+ +RV
Sbjct: 226 EAAISSCNNAFLDGQRIRV 244
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
+LYVGN+ + +L G V A V++D+ +R F F++ + + +AA+
Sbjct: 71 RLYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 130
Query: 263 LNGTDFRGRTIIV 275
LNGT+ GR I V
Sbjct: 131 LNGTEIGGREIKV 143
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 100/178 (56%), Gaps = 4/178 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ EL ++ + G V EV + +G SR ++TM ++ A I L
Sbjct: 72 LYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEKL 131
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G+++GGRE++V ++ + L+ + F+ +SPHK+YVGNL+ V + L+N
Sbjct: 132 NGTEIGGREVKV--NVTEKPLSTPDLPLLQAEESEFI-DSPHKVYVGNLAKTVTTDTLKN 188
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
F G V+SA+V + +GF++FSS+ + +AA+ S N + G+TI V +
Sbjct: 189 FFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQTIRVNKA 246
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 64 EEAVVVEDEINGKDNVGGNEVDDDSS-------------VEEPRSRARPCELYVCNLPRS 110
E+A V +++NG + +GG EV + + EE P ++YV NL ++
Sbjct: 122 EDATAVIEKLNGTE-IGGREVKVNVTEKPLSTPDLPLLQAEESEFIDSPHKVYVGNLAKT 180
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L F G VLS +VSR P T S G G++T S + AI + + S + G+
Sbjct: 181 VTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQT 240
Query: 171 MRV 173
+RV
Sbjct: 241 IRV 243
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
S +LYVGN+ V E+L G V A V++D+ +R F F++ + + A
Sbjct: 68 SARRLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAV 127
Query: 261 L-SLNGTDFRGRTIIV 275
+ LNGT+ GR + V
Sbjct: 128 IEKLNGTEIGGREVKV 143
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ EL ++ + G V EV + +G SR ++TM + A AI L
Sbjct: 81 LYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTAEDANAAIEKL 140
Query: 162 DGSDVGGREMRVRF------SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G+++GGRE++V S+D+ S + + +SP+K+YVGNL+ V
Sbjct: 141 NGTEIGGREIKVNITEKPLQSLDLPSLQSDESQFV---------DSPYKVYVGNLAKTVA 191
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274
+ L+N F + G V+SA+V + FGF++FSS+ + + A+ S N + G+ I
Sbjct: 192 TDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNNSLLEGQPIR 251
Query: 275 VREG 278
V +
Sbjct: 252 VNKA 255
>gi|255544262|ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547691|gb|EEF49184.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 256
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 97/178 (54%), Gaps = 4/178 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ N+PR+ D EL ++ + G V EV + +G SR ++TM ++ A I L
Sbjct: 82 LYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDANAVIEKL 141
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G+ +GGRE++V +I + + + FV +SPHK+YVGNL+ V E L+N
Sbjct: 142 NGTQIGGREIKV--NITEKPLASGDLSFLQLEESQFV-DSPHKVYVGNLAKTVTSEILKN 198
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
F G V+SA+V + +GF+SFS + + +AA+ S N + G+ I V +
Sbjct: 199 FFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAISSFNNSLLEGQKIRVNKA 256
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 98/184 (53%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ EL ++ + G V EV + +G SR ++TM + A AI L
Sbjct: 81 LYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTAEDANAAIEKL 140
Query: 162 DGSDVGGREMRVRF------SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G+++GGRE++V S+D+ S + + +SP+K+YVGNL+ V
Sbjct: 141 NGTEIGGREIKVNITEKPLQSLDLPSLQSDETQFV---------DSPYKVYVGNLAKTVA 191
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274
+ L+N F + G V+SA+V + FGF++FSS+ + + A+ S N + G+ I
Sbjct: 192 TDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNNSLLEGQPIR 251
Query: 275 VREG 278
V +
Sbjct: 252 VNKA 255
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 106/202 (52%), Gaps = 8/202 (3%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
++V+ D + E + ++V NLP S D ++L +F+ G+V VEV + TG SR
Sbjct: 59 SDVETDDAEESAGEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSR 118
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G G++TM ++ + A+ L+G + GR ++V + F +S
Sbjct: 119 GFGFVTMSTVEEVEEAVEQLNGYVLDGRTIKVNSGPPPPRDQSSPRGFREQSSGGFRQQS 178
Query: 202 P-------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
+++YVGNLSW V L N F G+V+ ARV++DR+ +R FGF+++ S
Sbjct: 179 SRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSS 238
Query: 255 AERDAALS-LNGTDFRGRTIIV 275
E + A+S L+GTD GR I V
Sbjct: 239 EEVEKAVSNLDGTDLDGRQIRV 260
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 95/183 (51%), Gaps = 22/183 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+YV NL + D EL ++ + G + VE V + ETG SRG GY+T+ SI+ A+ A+
Sbjct: 3 IYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQK 62
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK------IFVYESPHKLYVGNLSWAV 214
LDG V GR ++ +S P KK + V S K+++GNL W V
Sbjct: 63 LDGHIVQGRALKASYS--------------QPYKKAGKEGPVEVAASHTKVFIGNLPWGV 108
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
L F G VV ++++DR +R FGF++ SS E D A+ SL+G D GR +
Sbjct: 109 DDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGADCDGRRL 168
Query: 274 IVR 276
V+
Sbjct: 169 RVK 171
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A ++++ NLP D L E F+ G V+ V++ + +TG SRG G++T+ S A
Sbjct: 94 ASHTKVFIGNLPWGVDDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADE 153
Query: 157 AIIALDGSDVGGREMRVRFS 176
A+ +LDG+D GR +RV+ +
Sbjct: 154 AVKSLDGADCDGRRLRVKLA 173
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSA-RVLHDRKGQTTRVFGFISFSS-DAERDAAL 261
++YVGNLSW E+L + G + V+ DR+ +R FG+++ +S D + A
Sbjct: 2 RIYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQ 61
Query: 262 SLNGTDFRGRTI 273
L+G +GR +
Sbjct: 62 KLDGHIVQGRAL 73
>gi|449436259|ref|XP_004135910.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
gi|449489082|ref|XP_004158209.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
Length = 251
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 17/186 (9%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY+ N+PR+ + EL + + G V EV + +G SR ++TM ++ A AI
Sbjct: 75 KLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 134
Query: 161 LDGSDVGGREMRVRFS-------IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
L+ ++VGGR+++V + +DM + + + F+ +SP+K+YVGN+S
Sbjct: 135 LNETEVGGRKIKVNITEKPVVNTVDM--------SFLQAEESQFI-DSPYKVYVGNISST 185
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRT 272
V E L+N F G V+SA+V + +GF++FSS+ E DAA+ S N G+
Sbjct: 186 VSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAISSFNNALLEGQP 245
Query: 273 IIVREG 278
I V +
Sbjct: 246 IRVNKA 251
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YV N+ + L F G VLS +VSR P T S G G++T S AI
Sbjct: 174 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAI 233
Query: 159 IALDGSDVGGREMRV 173
+ + + + G+ +RV
Sbjct: 234 SSFNNALLEGQPIRV 248
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 97/181 (53%), Gaps = 5/181 (2%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NL S D + L E+F+ G V VEV + TG SRG G++TM S + A
Sbjct: 87 LKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 ALDGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G ++ GR +RV NS R + + ++S +++YVGNL+W V
Sbjct: 147 QFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVD 206
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274
+ L F G VV A+V++DR +R FGF+++SS E + A+ SL+G D GR I
Sbjct: 207 QDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266
Query: 275 V 275
V
Sbjct: 267 V 267
>gi|147859670|emb|CAN83111.1| hypothetical protein VITISV_026573 [Vitis vinifera]
Length = 355
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 90/170 (52%), Gaps = 17/170 (10%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP S D + L + + +G+ VEV + +TG SRG ++TM S+ I
Sbjct: 67 KLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVEDCNAVIEN 126
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
LDGS+ GGR +RV FS P K+ +Y E+ +KL+VGNLSW+V E L
Sbjct: 127 LDGSEYGGRTLRVNFS-------------DKPKPKLPLYPETEYKLFVGNLSWSVTSESL 173
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFR 269
F +G V+ ARVL+D G+T V + + R +L + G DF
Sbjct: 174 NQVFQEYGNVIGARVLYD--GETGSVIWLLIGIKQSGRAPSLVI-GFDFH 220
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 99/181 (54%), Gaps = 17/181 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ EL ++F G V EV + T SR ++TM ++ A+ AI +
Sbjct: 75 LYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRRFAFVTMSTVEDAQAAIEKM 134
Query: 162 DGSDVGGREMRVRFS---ID---MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G+++GGR ++V + +D +N T AE + +SP+K+YVGNL+ AV
Sbjct: 135 NGTEIGGRVIKVNITEKPLDVSGLNRLTEEAEFI----------DSPYKVYVGNLAKAVT 184
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTII 274
E L+ F G V+ A+V + + +GF+SFSS+A+ +AA+S N G+ +
Sbjct: 185 TETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAISAFNNVVLEGKPMR 244
Query: 275 V 275
V
Sbjct: 245 V 245
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YV NL ++ L + F G VL +V+R PETG S G G+++ S + AI
Sbjct: 171 PYKVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAI 230
Query: 159 IALDGSDVGGREMRV 173
A + + G+ MRV
Sbjct: 231 SAFNNVVLEGKPMRV 245
>gi|224035665|gb|ACN36908.1| unknown [Zea mays]
Length = 251
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 103/190 (54%), Gaps = 6/190 (3%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
V S+V E +LYV N+PR+ EL +MF GTV EV + T SR
Sbjct: 53 VSASSAVLEAPEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRF 112
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH 203
G++TM + A A+ AL+G++VG R+++V + S N + P+ +FV +S +
Sbjct: 113 GFVTMSTAEEANAAVEALNGTEVGDRKIKVNVT---ESFLPNIDRSAPEPEALFV-DSQY 168
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
K+YVGNL+ V E L+N F G ++SA V H ++ +GF++FSS+ E +AA++
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 228
Query: 264 --NGTDFRGR 271
N F R
Sbjct: 229 FNNAVSFSCR 238
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 11/195 (5%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ ++V+ P R +LYV N+PR+ EL ++ + G V EV + + SR +
Sbjct: 50 EQATVDSPALR----KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAF 105
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL-ISPPKKIFVYESPHK 204
+TM ++ A A L+G+++GGRE++V ++ + E L + + FV +SP+K
Sbjct: 106 VTMKTVEDANAAAEKLNGTEIGGREIKV----NITEKPLTTEGLPVQAGESTFV-DSPYK 160
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+YVGNL+ V + L+ F G +SA+V + FGF++FSSD + +AA+ S
Sbjct: 161 VYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSF 220
Query: 264 NGTDFRGRTIIVREG 278
N G+ I V +G
Sbjct: 221 NNALLEGQKIRVNKG 235
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 14/178 (7%)
Query: 100 CELYVCNLPRSFDISE-LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V N+P +D SE L +F G V EV N ET SRG G++TM ++ A+ A+
Sbjct: 30 AKLFVGNIP--YDDSEKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAV 87
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L D+ GR + V + SR P++ + ++YVGNL W V
Sbjct: 88 EMLHRYDINGRNLTVNKAAPRGSR----------PERPRESDPSLRVYVGNLPWQVDDSR 137
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
L F G V+ ARV++DR+ +R FGF++ ++ E D A+ +L+G GR + V
Sbjct: 138 LEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDGQSLEGRALRV 195
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 72 EINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+ING++ S E PR +YV NLP D S L ++F G V+ V
Sbjct: 94 DINGRNLTVNKAAPRGSRPERPRESDPSLRVYVGNLPWQVDDSRLEQLFSEHGKVIDARV 153
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
+ ++G SRG G++T+ + +AI ALDG + GR +RV
Sbjct: 154 VYDRQSGRSRGFGFVTLATREEVDDAIAALDGQSLEGRALRV 195
>gi|226533248|ref|NP_001149356.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195626620|gb|ACG35140.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414884785|tpg|DAA60799.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 251
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 4/179 (2%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
V S+V E +LYV N+PR+ EL +MF GTV EV + T SR
Sbjct: 53 VSASSAVLEAPEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRF 112
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH 203
G++TM + A A+ AL+G++VG R+++V + S N + P+ +FV +S +
Sbjct: 113 GFVTMSTAEEANAAVEALNGTEVGDRKIKVNVT---ESFLPNIDRSAPEPEALFV-DSQY 168
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
K+YVGNL+ V E L+N F G ++SA V H ++ +GF++FSS+ E +AA++
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVA 227
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 10/158 (6%)
Query: 119 MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
+F+ GTV EV N ET SRG G++TM S++ A+ A+ + D+ GR + V +
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 61
Query: 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR 238
SR P + VYE ++YVGNL W V L F G VV ARV++DR
Sbjct: 62 RGSR---------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 112
Query: 239 KGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
+ +R FGF++ S E + A+S L+G + GR I V
Sbjct: 113 ETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 150
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+ V + ETG SRG G++TM ++
Sbjct: 70 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 129
Query: 153 SAKNAIIALDGSDVGGREMRV 173
AI ALDG ++ GR +RV
Sbjct: 130 ELNEAISALDGQNLEGRAIRV 150
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ EL ++ + G V EV + +G SR ++TM ++ A I L
Sbjct: 72 LYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEKL 131
Query: 162 DGSDVGGREMRVRFS------IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G+++GGRE++V + +D+ L+ + F+ +SPHK+YVGNL+ V
Sbjct: 132 NGTELGGREIKVNVTEKPLSTLDL--------PLLQAEESEFI-DSPHKVYVGNLAKTVT 182
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274
+ L+N F G V+SA+V + +GF++F S+ + +AA+ S N + G+TI
Sbjct: 183 TDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNNSLLEGQTIR 242
Query: 275 VREG 278
V +
Sbjct: 243 VNKA 246
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 89/186 (47%), Gaps = 13/186 (6%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G E + + EP A+ +YV NLP D L ++F G V EV N ETG S
Sbjct: 92 GGEGEGQYAAVEPPEEAK---VYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQS 148
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM ++ A AI D+ GR + V + +R + +P
Sbjct: 149 RGFGFVTMSTVEEADKAIEMFSRYDISGRLLNVNRASSRGTRMERPQRQFAP-------- 200
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ YVGNL W V L F G VV A+V++DR+ +R FGF+S S E + A
Sbjct: 201 -AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDA 259
Query: 261 LS-LNG 265
+S L+G
Sbjct: 260 ISALDG 265
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 188 ALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
A + PP++ K+YVGNL + V E L F + G V A V+++R+ +R FG
Sbjct: 100 AAVEPPEE-------AKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQSRGFG 152
Query: 248 FISFSSDAERDAALSL-NGTDFRGRTIIVREGVDR 281
F++ S+ E D A+ + + D GR + V R
Sbjct: 153 FVTMSTVEEADKAIEMFSRYDISGRLLNVNRASSR 187
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 7/187 (3%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +++V NLP D L +F GTV EV N T SRG G++TM ++ K
Sbjct: 113 KAEEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELK 172
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A+ G ++ GR + V N PP+ + S ++YVGNL W V
Sbjct: 173 KAVEMFSGYELNGRVLTV------NKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVD 226
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTII 274
L F G V ARV++DR+ +R FGF++ SS+ + DA +L+G GR I
Sbjct: 227 DARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIR 286
Query: 275 VREGVDR 281
V DR
Sbjct: 287 VNVAQDR 293
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D + L ++F G V V + ETG SRG G++TM S +AI AL
Sbjct: 216 VYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAAL 275
Query: 162 DGSDVGGREMRVRFSIDMNSRT 183
DG + GR +RV + D SR+
Sbjct: 276 DGQSLDGRAIRVNVAQDRPSRS 297
>gi|118487510|gb|ABK95582.1| unknown [Populus trichocarpa]
Length = 198
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
SEL E+F+ G V EV + T SRG G++TM S+ AK AI +GS VGGR +RV
Sbjct: 4 SELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGSQVGGRTLRV 63
Query: 174 RF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
F + E I K F+ +S HK+Y GNL W + E L + F ++SA
Sbjct: 64 NFPEVPRGGEREVMEPRIRSGYKGFI-DSEHKIYAGNLGWRLTSEGLGDAFANQPGLLSA 122
Query: 233 RVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+V+++R +R FGF+SF S + A ++NG + GR +
Sbjct: 123 KVIYERDTGRSRGFGFVSFDSAENAEAALEAMNGEEVDGRPL 164
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 6/187 (3%)
Query: 93 PRSR----ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PR+R P +YV NLP +F +EL F G+V V++ + T SRG ++TM
Sbjct: 97 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 156
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A A+ +G+ +GGR +RV F + A A ++ V + +K+Y
Sbjct: 157 ATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVDDGTYKVYA 216
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNL W V+ + L+ F +V ARV+ +R +R FGF+SF + + AAL +++G
Sbjct: 217 GNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGV 276
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 277 ELDGRPL 283
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L F+ ++ V +TG SRG G+++ +I AK A+ A
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 161 LDGSDVGGREMRVRFS 176
+DG ++ GR +R+ +
Sbjct: 273 MDGVELDGRPLRLSLA 288
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 6/187 (3%)
Query: 93 PRSR----ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PR+R P +YV NLP +F +EL F G+V V++ + T SRG ++TM
Sbjct: 97 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 156
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A A+ +G+ +GGR +RV F + A A ++ V + +K+Y
Sbjct: 157 ATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVDDGTYKVYA 216
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNL W V+ + L+ F +V ARV+ +R +R FGF+SF + + AAL +++G
Sbjct: 217 GNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGV 276
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 277 ELDGRPL 283
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L F+ ++ V +TG SRG G+++ +I AK A+ A
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 161 LDGSDVGGREMRVRFS 176
+DG ++ GR +R+ +
Sbjct: 273 MDGVELDGRPLRLSLA 288
>gi|326496905|dbj|BAJ98479.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 13/177 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V N+P +F +E ++F G V VEV + + G RG ++TM + A +
Sbjct: 61 KLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMKD-GRKRGFAFVTMATAEEAAAVVEK 119
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DG D+ GR ++V FS +PP + +KLYV NL+W + DL+
Sbjct: 120 FDGHDINGRVIKVEFSKSFRKP--------APPSSPDTIVAKYKLYVSNLAWKARSADLK 171
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F +F V + V DRK +GF+SF + E +AALS LNG + R +I+R
Sbjct: 172 EFFSQFNPVSANIVFDDRKSAG---YGFVSFGTKEEAEAALSELNGKELMERPVILR 225
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ ++V+ P R +LYV N+PR+ EL ++ + G V EV + + SR +
Sbjct: 50 EQATVDSPALR----KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAF 105
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL-ISPPKKIFVYESPHK 204
+TM ++ A A L+G+++GGRE++V ++ + E L + + FV +SP+K
Sbjct: 106 VTMKTVEDANAAAEKLNGTEIGGREIKV----NITEKPLTTEGLPVQAGESTFV-DSPYK 160
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+YVGNL+ V + L+ F G +SA+V + FGF++FSSD + +AA+ S
Sbjct: 161 VYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSF 220
Query: 264 NGTDFRGRTIIVREG 278
N G+ I V +
Sbjct: 221 NNALLEGQKIRVNKA 235
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 4/197 (2%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E ++ + +P S A +Y+ N+PR+ +L ++ + G V V+V + +G SR
Sbjct: 60 ETEEKPAALDPSSEA-ARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G+ TM S+ A + L+G+ V GRE++V + + + + L S FV +SP
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSE-DSAFV-DSP 176
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
+K+YVGNL+ V E L N F G VVSA+V + FGF++FSS+ + +AA+
Sbjct: 177 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIV 236
Query: 262 SLNGTDFRGRTIIVREG 278
+LN + G+ I V +
Sbjct: 237 ALNNSLLEGQKIRVNKA 253
>gi|222423445|dbj|BAH19693.1| AT3G52150 [Arabidopsis thaliana]
Length = 253
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 4/197 (2%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E ++ + +P S A +Y+ N+PR+ +L ++ + G V V+V + +G SR
Sbjct: 60 ETEEKPAALDPSSEA-ARRVYIGNIPRTVSNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G+ TM S+ A + L+G+ V GRE++V + + + + L S FV +SP
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSE-DSAFV-DSP 176
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA-L 261
+K+YVGNL+ V E L N F G VVSA+V + FGF++FSS+ + +AA +
Sbjct: 177 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAVV 236
Query: 262 SLNGTDFRGRTIIVREG 278
+LN + G+ I V +
Sbjct: 237 ALNNSLLEGQKIRVNKA 253
>gi|326503644|dbj|BAJ86328.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 285
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 90/177 (50%), Gaps = 13/177 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V N+P +F +E ++F G V VEV + + G RG ++TM + A +
Sbjct: 80 KLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMKD-GRKRGFAFVTMATAEEAAAVVEK 138
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DG D+ GR ++V FS +PP + +KLYV NL+W + DL+
Sbjct: 139 FDGHDINGRVIKVEFSKSFRKP--------APPSSPDTIVAKYKLYVSNLAWKARSADLK 190
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F +F V + V DRK +GF+SF + E +AALS LNG + R +I+R
Sbjct: 191 EFFSQFNPVSANIVFDDRKSAG---YGFVSFGTKEEAEAALSELNGKELMERPVILR 244
>gi|75275079|sp|P82277.1|RRP2_SPIOL RecName: Full=30S ribosomal protein 2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 2;
Short=PSRP-2; Flags: Precursor
gi|7578881|gb|AAF64167.1|AF240462_1 plastid-specific ribosomal protein 2 precursor [Spinacia oleracea]
Length = 260
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 12/179 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ + EL + + G + EV + +G SR G++TM ++ A I L
Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145
Query: 162 DGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+ +++GGR+++V + M+ T AE FV ESP+K+Y+GNL+ V E
Sbjct: 146 NDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNE 198
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
L++ F G V+ A+V + FGF+SFSS+ E +AA+ +LN + G+ I V
Sbjct: 199 LLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 25 KRFGFTSLPTL--INFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN 82
+RFGF ++ T+ N KL+ G R + + + E + G D +
Sbjct: 125 RRFGFVTMKTVEDANAVIEKLNDT-----EIGGRKI------KVNITEKPLEGMD-IATT 172
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
+ +D VE P ++Y+ NL ++ L + F G VL +V R P T S G
Sbjct: 173 QAEDSQFVESP------YKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNG 226
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
G+++ S + AI AL+ S + G+++RV
Sbjct: 227 FGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E +LYVGN+ + ++LR G + A V++D+ +R FGF++ + + +A
Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140
Query: 260 AL-SLNGTDFRGRTIIVR------EGVD 280
+ LN T+ GR I V EG+D
Sbjct: 141 VIEKLNDTEIGGRKIKVNITEKPLEGMD 168
>gi|50409715|ref|XP_456900.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
gi|49652564|emb|CAG84877.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
Length = 447
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 97/185 (52%), Gaps = 8/185 (4%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
++P++ P L+V L S D L F+P G V+S V TG SRG GY+ S
Sbjct: 189 KKPKTNEEPATLFVGRLSWSIDDEWLRREFEPVGGVISARVIMERSTGKSRGYGYVDFDS 248
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPHK-LYV 207
++A+ A+ G ++ GR + ++DM++ +A + K F V +P L+V
Sbjct: 249 KSAAEKALQEYQGKELDGRPI----NLDMSTGKPHASNPNTDRAKQFGDVPSAPSDTLFV 304
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNLS+ + + L N FG +GTVVS R+ Q + FG++ FSS E AAL +LNG
Sbjct: 305 GNLSFNAERDSLFNTFGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGE 364
Query: 267 DFRGR 271
GR
Sbjct: 365 YLDGR 369
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 194 KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
KK E P L+VG LSW++ E LR F G V+SARV+ +R +R +G++ F S
Sbjct: 189 KKPKTNEEPATLFVGRLSWSIDDEWLRREFEPVGGVISARVIMERSTGKSRGYGYVDFDS 248
Query: 254 DAERDAALS-LNGTDFRGRTI 273
+ + AL G + GR I
Sbjct: 249 KSAAEKALQEYQGKELDGRPI 269
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL + + L F +GTV+S + +P+T +G GY+ S++ AK A+ AL
Sbjct: 302 LFVGNLSFNAERDSLFNTFGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 361
Query: 162 DGSDVGGREMRVRFSI 177
+G + GR R+ FS
Sbjct: 362 NGEYLDGRACRLDFST 377
>gi|297816490|ref|XP_002876128.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
gi|297321966|gb|EFH52387.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 101/185 (54%), Gaps = 3/185 (1%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E ++ + +P S A +Y+ N+PR+ +L ++ + G V V+V + +G SR
Sbjct: 60 ETEEKPAALDPSSEA-ARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G+ TM S+ A + L+G+ V GRE++V + + + +L+ FV +SP
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSSPDLSLLQSEDSAFV-DSP 177
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA-L 261
+K+YVGNL+ V E L N F G VVSA+V + FGF++FSS+ + +AA L
Sbjct: 178 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIL 237
Query: 262 SLNGT 266
+LN +
Sbjct: 238 ALNNS 242
>gi|297742089|emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 100/199 (50%), Gaps = 14/199 (7%)
Query: 88 SSVEEPRSRARPCE---------LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
SSV+E A+P + L+V NLP S + ++ +F GTV VE+ + + G
Sbjct: 38 SSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKD-G 96
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
SRG ++TM S A+ + D ++ GR +RV F+ + + PP
Sbjct: 97 RSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFK---KPSPPPPPPPAGPPA 153
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
E+ HKLYV NL+W V+ LR F VS RV+ D + +GF SF++ E +
Sbjct: 154 GETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAE 213
Query: 259 AALS-LNGTDFRGRTIIVR 276
AA+S L+G + GR + ++
Sbjct: 214 AAISALDGKELMGRPVHLK 232
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 101/196 (51%), Gaps = 5/196 (2%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
E++ ++ E+ + + +L+V NLP S + ++ +F GTV VE+ + + G SR
Sbjct: 71 QEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKD-GRSR 129
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G ++TM S A+ + D ++ GR +RV F+ + + PP E+
Sbjct: 130 GYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFK---KPSPPPPPPPAGPPAGET 186
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
HKLYV NL+W V+ LR F VS RV+ D + +GF SF++ E +AA+
Sbjct: 187 RHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAI 246
Query: 262 S-LNGTDFRGRTIIVR 276
S L+G + GR + ++
Sbjct: 247 SALDGKELMGRPVHLK 262
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 6/187 (3%)
Query: 93 PRSR----ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PR+R P +YV NLP +F +EL +F G+V V++ + T SRG ++TM
Sbjct: 110 PRTRPALGQEPGRIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTM 169
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI-FVYESPHKLYV 207
+ A A+ +G+ +GGR +RV F R + + + V + +K+Y
Sbjct: 170 ATAEEAAKAVQMFNGALLGGRTIRVNFPEVPRGGERAVASAAAAKTSLRVVDDGTYKVYA 229
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNL W V+ + L+ F ++ +RV+ +R +R FGF+SF + + +AA+ +++G
Sbjct: 230 GNLGWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQAMDGV 289
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 290 ELDGRPL 296
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 11/203 (5%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GG++++D A +++V NLP FD +L +F+ GTV EV N T
Sbjct: 102 GGDDIEDGGEGGFAEEEAEEVKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDR 161
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM +I + A+ G ++ GR + V A + P++
Sbjct: 162 SRGFGFVTMSTIEELEKAVKMFSGYELNGRVLTV----------NKAAPKGAQPERPPRP 211
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
++YVGNL W V L F G V ARV++DR+ +R FGF++ SS+ + D
Sbjct: 212 PQSFRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMND 271
Query: 259 AALSLNGTDFRGRTIIVREGVDR 281
A +L+G GR I V R
Sbjct: 272 AIAALDGQSLDGRAIRVNVAAQR 294
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 11/203 (5%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GG++++D A +++V NLP FD +L +F+ GTV EV N T
Sbjct: 104 GGDDIEDGGEGGFAEEEAEEVKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDR 163
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM +I + A+ G ++ GR + V A + P++
Sbjct: 164 SRGFGFVTMSTIEELEKAVKMFSGYELNGRVLTV----------NKAAPKGAQPERPPRP 213
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
++YVGNL W V L F G V ARV++DR+ +R FGF++ SS+ + D
Sbjct: 214 PQSFRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMND 273
Query: 259 AALSLNGTDFRGRTIIVREGVDR 281
A +L+G GR I V R
Sbjct: 274 AIAALDGQSLDGRAIRVNVAAQR 296
>gi|326503656|dbj|BAJ86334.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 268
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 9/200 (4%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
V D E + ++V NLP S D ++L +F+ G+V VEV + TG SRG
Sbjct: 58 VSSDVETEVAEEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGF 117
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP- 202
G++TM ++ + A+ L+G + GR ++V S + +++ F +S
Sbjct: 118 GFVTMSTVEEVEEAVERLNGYVLDGRALKVN-SGPPPPKDQSSPRGFREQSGGFRQQSSR 176
Query: 203 ------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDA 255
+++YVGNLSW V L N F G+V+ ARV++DR+ +R FGF+++ +SD
Sbjct: 177 GPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGTSDE 236
Query: 256 ERDAALSLNGTDFRGRTIIV 275
+ A +L+GTD GR I V
Sbjct: 237 VQKAVSNLDGTDMDGRQIRV 256
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
+++VGNL ++V L F + G+V V++D+ +R FGF++ S+ E + A+
Sbjct: 75 RVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSTVEEVEEAVER 134
Query: 263 LNGTDFRGRTIIVREG 278
LNG GR + V G
Sbjct: 135 LNGYVLDGRALKVNSG 150
>gi|301115672|ref|XP_002905565.1| RNA binding protein, putative [Phytophthora infestans T30-4]
gi|262110354|gb|EEY68406.1| RNA binding protein, putative [Phytophthora infestans T30-4]
Length = 322
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 104/196 (53%), Gaps = 18/196 (9%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTV-LSVEVSRNPETGISRG 142
V ++ VE ++ + +YV NL S +L + + G V L+ + N G S+G
Sbjct: 58 VRNEEDVEMEQTSSVGSRVYVGNLSWSIKGQDLKDHMQAAGPVDLATVLEWN---GRSKG 114
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
CG +T + +A+NAI L+ +++GGR++ VR R A P +
Sbjct: 115 CGIVTYATEEAAQNAIATLNDTELGGRKIFVR-----EDREAQPTATTKPKR-------G 162
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+++YVGNLSW VK ++L++H GTVV A VL G+ ++ G + ++++ E A++
Sbjct: 163 YRVYVGNLSWNVKWQELKDHMKTAGTVVHADVLELANGR-SKGCGLVEYATEDEAAKAIA 221
Query: 263 -LNGTDFRGRTIIVRE 277
LN T+ GR I VRE
Sbjct: 222 ELNNTELEGRLIFVRE 237
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +YV NL + EL + K GTV+ +V G S+GCG + + + A A
Sbjct: 161 RGYRVYVGNLSWNVKWQELKDHMKTAGTVVHADVL-ELANGRSKGCGLVEYATEDEAAKA 219
Query: 158 IIALDGSDVGGREMRVRFSID--MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
I L+ +++ GR + VR + S ++ A+ +P +LYVGNL W
Sbjct: 220 IAELNNTELEGRLIFVREDREPEGGSISKFAKRASAPRGN----GEGRQLYVGNLPWDTN 275
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
+ L++ F G V A + G+ +R FG I +++
Sbjct: 276 WQQLKDLFRTVGDVERADIAEYPDGR-SRGFGIIRYTN 312
>gi|357165665|ref|XP_003580455.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 1
[Brachypodium distachyon]
gi|357165668|ref|XP_003580456.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 2
[Brachypodium distachyon]
Length = 286
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + E+ ++F G V V+V + + G RG ++TMGS A A+
Sbjct: 82 LYVANLPWTLPAVEIEKLFAECGVVKDVQVIKM-KDGRKRGFAFVTMGSAEEAAAAVEKF 140
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ DV GR ++V FS +T A P IF + HKLYV NL+W + D++
Sbjct: 141 NSYDVMGRIIKVEFS-----KTFRKPAPPRIPSTIF---ARHKLYVSNLAWKARSSDIKA 192
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F +F + + V D+K +GF+SF + + +AALS LNG + R +++R
Sbjct: 193 FFSQFNPISANVVFDDKKSAG---YGFVSFQTKEDAEAALSELNGKELLERPVLLR 245
>gi|297823333|ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
gi|297325388|gb|EFH55808.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 124/249 (49%), Gaps = 18/249 (7%)
Query: 33 PTLINFQYP-KLSSCWS-RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSV 90
PT ++ + P LS +S RS R +++V+ V E E + ++ E +
Sbjct: 34 PTALSLRLPSNLSPVFSLRSGGDNSRRLVSVL---CSVAEKETSAEE-----ETSQEEKT 85
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE + +L+V NLP S ++++ E+F GTV +VE+ R + G +RG ++TM S
Sbjct: 86 EETQKSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMAS 144
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
A+ AI D S V GR + V F+ T + P ++ HKLYV NL
Sbjct: 145 GEEAQAAIDKFDTSQVSGRIISVNFARRFKKPTPKPPNDLPSPP---PGDTRHKLYVSNL 201
Query: 211 SWAVKPEDLRNHF--GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTD 267
+W + LR F F V + V D +G+++ +GF+SF++ E DA L+G +
Sbjct: 202 AWKARSTHLRELFTASDFNPVSARVVFADPEGRSSG-YGFVSFATREEAEDAIAKLDGKE 260
Query: 268 FRGRTIIVR 276
GR II++
Sbjct: 261 IMGRPIILK 269
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKP--FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+LYV NL + L E+F F V + V +PE G S G G+++ + A++AI
Sbjct: 195 KLYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPE-GRSSGYGFVSFATREEAEDAI 253
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
LDG ++ GR + ++FS+ S + + + +
Sbjct: 254 AKLDGKEIMGRPIILKFSLRSASESEDGDTV 284
>gi|15226983|ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|3608147|gb|AAC36180.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 308
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 10/205 (4%)
Query: 76 KDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
K+ E + EE ++ +L+V NLP S ++++ E+F GTV +VE+ R
Sbjct: 71 KETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK 130
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-RNAEALISPPK 194
+ G +RG ++TM S A+ AI D V GR + V F+ T ++ L SP
Sbjct: 131 D-GKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAP 189
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHF--GRFGTVVSARVLHDRKGQTTRVFGFISFS 252
++ HKLYV NL+W + LR F F V + V D +G+++ +GF+SF+
Sbjct: 190 G----DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSG-YGFVSFA 244
Query: 253 SDAERDAALS-LNGTDFRGRTIIVR 276
+ E + A++ LNG + GR I ++
Sbjct: 245 TREEAENAITKLNGKEIMGRPITLK 269
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKP--FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+LYV NL + L E+F F V + V +PE G S G G+++ + A+NAI
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFATREEAENAI 253
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
L+G ++ GR + ++FS+ S + + +++
Sbjct: 254 TKLNGKEIMGRPITLKFSLRSASESEDGDSV 284
>gi|388521331|gb|AFK48727.1| unknown [Lotus japonicus]
Length = 285
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 9/178 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +++ ++F GTV VE+ R + G +G ++TM S A+ A+
Sbjct: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
D ++ GR +RV + R + P E+ H +Y NL+W V+ LR
Sbjct: 146 FDTLELSGRILRVELA------KRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRSTHLR 199
Query: 221 NHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F F +SAR++ D T +GFIS+ + E +AA+S L+G + GR++ ++
Sbjct: 200 EFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTKEEAEAAISALDGKELMGRSLFLK 257
>gi|302754352|ref|XP_002960600.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
gi|302771648|ref|XP_002969242.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300162718|gb|EFJ29330.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300171539|gb|EFJ38139.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
Length = 197
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 5/184 (2%)
Query: 94 RSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
RS P +LYV N+ + D L + F G EV + G SRG ++T+ + +
Sbjct: 11 RSEPAPNTKLYVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTED 70
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+AK AI LDG ++ GR +RV + + P + +P K +V N+ W
Sbjct: 71 AAKTAIEKLDGHELEGRPLRVNYPQVPRGGGGFGGGFGTRPS---IPANPAKCFVANIPW 127
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGR 271
+V + L+ F GTVV R+L D + +R GF++F++ E + A+S L+G + GR
Sbjct: 128 SVDDQGLQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAISALDGAELGGR 187
Query: 272 TIIV 275
+I V
Sbjct: 188 SIRV 191
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A P + +V N+P S D L E F GTV+ + + E+G SRG G++T + +
Sbjct: 111 PSIPANPAKCFVANIPWSVDDQGLQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPD 170
Query: 153 SAKNAIIALDGSDVGGREMRVRFS 176
A NAI ALDG+++GGR +RV +
Sbjct: 171 EANNAISALDGAELGGRSIRVALA 194
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 14/212 (6%)
Query: 72 EINGKDNVGGNEVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLS 128
E G+ + D+ EE + A P E ++V NLP + L +F+ G+V
Sbjct: 89 ENEGEPTWANEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEF 148
Query: 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
EV N T SRG G++ M + + A+ G ++ GR + V + +R
Sbjct: 149 AEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPER--- 205
Query: 189 LISPPKKIFVYESPHK----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
PP+ +YVGNL W+V L F G V +AR++ DR+ +R
Sbjct: 206 ---PPRTFGSGSGSRDSGLSVYVGNLPWSVDAARLEEIFREHGNVENARIVMDRETGRSR 262
Query: 245 VFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
FGF++ SS+A+ + A+ +L+G GRTI V
Sbjct: 263 GFGFVTMSSEADINGAIAALDGQSLDGRTIRV 294
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 97/180 (53%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+P S + EL +F GT+ V++ + G SRG G + ++N A+ AI L
Sbjct: 9 LYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQ-GRSRGYGIVEYSNVNEAQVAIQTL 67
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH----KLYVGNLSWAVKPE 217
DG +G R + VR + + T++A + S + + ++P + YVGNL+W E
Sbjct: 68 DGHTLGDRNITVR---EDKAPTKSAPSK-SGGNRSTIGDTPAADGCRCYVGNLAWETNEE 123
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVR 276
L H + GTVV A V G+ ++ +G + F + DA A +L+ +D +GR+IIVR
Sbjct: 124 SLIAHCSQVGTVVQAEVAKQPGGR-SKGWGLVDFETPDAANSAINTLHNSDLQGRSIIVR 182
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 9/182 (4%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A C YV NL + L+ GTV+ EV++ P G S+G G + + ++A +
Sbjct: 106 ADGCRCYVGNLAWETNEESLIAHCSQVGTVVQAEVAKQP-GGRSKGWGLVDFETPDAANS 164
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
AI L SD+ GR + VR R A P S ++ V NL W+
Sbjct: 165 AINTLHNSDLQGRSIIVRLE-----RAGGANKSGGPNAGRPEASSGLQIVVRNLPWSTTS 219
Query: 217 EDLRNHFGRFGTVVSAR-VLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTII 274
EDLR F + GTV+ A V H G+ ++ +G + F + + AA+ NG + R +
Sbjct: 220 EDLRQVFQQVGTVIKAEAVCHADTGR-SKGWGTVLFETREQAQAAIQGFNGVELEHRPMQ 278
Query: 275 VR 276
++
Sbjct: 279 IK 280
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 200 ESP-HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
E P ++LYVGN+ W+ ++LR F GT+ + R+G+ +R +G + +S+ E
Sbjct: 3 EGPTNRLYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQGR-SRGYGIVEYSNVNEAQ 61
Query: 259 AAL-SLNGTDFRGRTIIVRE 277
A+ +L+G R I VRE
Sbjct: 62 VAIQTLDGHTLGDRNITVRE 81
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 8/180 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ +V+ TG+S+G G++ +SA AI +
Sbjct: 206 LYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINRM 265
Query: 162 DGSDVGGREMRVRFS----IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V G+ + VR + N ++ S P + S LYV NLS ++ E
Sbjct: 266 NGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSS---LYVRNLSLSMTKE 322
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVR 276
+L HF FG ++ A+V D + +GF+ +S+ E +A + LNG G+ + VR
Sbjct: 323 ELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNGHLVEGKKMEVR 382
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 3/187 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+P LYV NL S ELL+ F PFG ++ +V R+ TG+++G G++ +
Sbjct: 300 QPSEEIDMSSLYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNS 359
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A NAII L+G V G++M VR S ++ N+ ++ LYV N+
Sbjct: 360 HEAANAIIHLNGHLVEGKKMEVRVS-GVSPALSNSAVESHTDARLIKEIDMANLYVCNIP 418
Query: 212 WAVKPEDLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFR 269
++ + L F FG + ARV H +GF+ F+ S +A ++G
Sbjct: 419 TSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAITLMDGALVE 478
Query: 270 GRTIIVR 276
G T++VR
Sbjct: 479 GETLVVR 485
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V +P + + +L+E+F+PFG ++ V V ++ +G G SA AI +
Sbjct: 607 VFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQH------QGYGMFRFNDPFSAAAAIDHM 660
Query: 162 DGSDVGGREMRVRFSI-----DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +GG + VR + D ++ T + + + P LYV +L +
Sbjct: 661 NGYQIGGSALVVRVAGLPNPGDFSAATDDLK--LQMPGNEGRQIDMANLYVCHLPLYITT 718
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
E L F G + ARV+ DR ++ FGF+ F+ AL+ +NG G + V
Sbjct: 719 EKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFADTYSAAVALTHMNGYPLEGHILEV 778
Query: 276 R 276
R
Sbjct: 779 R 779
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 86 DDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
DD ++ P + R + LYVC+LP +L+E+F P G + V + TGIS+G
Sbjct: 688 DDLKLQMPGNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKG 747
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G++ SA A+ ++G + G + VR + + + ++ F Y P
Sbjct: 748 FGFVRFADTYSAAVALTHMNGYPLEGHILEVRIA---GVHPSDMGSYMTQLYSQFTYPDP 804
Query: 203 HKLYVG 208
+ VG
Sbjct: 805 STMVVG 810
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NLPRS + ++++F PFG + +V N E + + + SA AI +
Sbjct: 513 IYITNLPRSTNADMMVKLFVPFGQI--SKVVMNLEYSL------VYYADVASAVKAIKHM 564
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG +GG+ + VR S + + S K++ + + ++VG + V + L
Sbjct: 565 DGYMIGGKRLVVRRSDSCPTDAAGHTSTQSLGKEVKEIDMAN-VFVGRIPSTVNGDQLVE 623
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276
F FG +V RV + +G F+ AA+ +NG G ++VR
Sbjct: 624 LFRPFGQIVQVRVFQHQG------YGMFRFNDPFSAAAAIDHMNGYQIGGSALVVR 673
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 96/193 (49%), Gaps = 11/193 (5%)
Query: 87 DSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
D + EEP + + E ++V NL + D L F GTV S + + ETG ++
Sbjct: 165 DEAAEEPTKKPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAK 224
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G GY+T S + A A +AL G+++ GRE+RV S R N + P+
Sbjct: 225 GFGYVTFESAD-ALTAAMALTGTELDGREIRVDVSTPKPPRDGNRQGRKEAPQSA----P 279
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAA 260
L++GNLS+ V +++R F ++G +VS R DR + FG++ + + + A
Sbjct: 280 TTTLFLGNLSFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAV 339
Query: 261 LSLNGTDFRGRTI 273
LNG + GR++
Sbjct: 340 EGLNGVEIAGRSL 352
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 180 NSRTRNAEALISPPKKIFVYESP--HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
S+ R+A+ P K E P ++VGNLSW V E L F GTV SAR++ D
Sbjct: 158 KSKKRSADEAAEEPTKKPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITD 217
Query: 238 RKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
++ + FG+++F S AA++L GT+ GR I V
Sbjct: 218 KETGRAKGFGYVTFESADALTAAMALTGTELDGREIRV 255
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E P+S A L++ NL SF+++E + E F +G ++SV + +TG +G GY+
Sbjct: 273 EAPQS-APTTTLFLGNL--SFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEY 329
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFS 176
G + +A+ A+ L+G ++ GR +R+ ++
Sbjct: 330 GDVETAQKAVEGLNGVEIAGRSLRLDYA 357
>gi|308807591|ref|XP_003081106.1| Ps16 protein (ISS) [Ostreococcus tauri]
gi|116059568|emb|CAL55275.1| Ps16 protein (ISS) [Ostreococcus tauri]
Length = 1094
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 88/175 (50%), Gaps = 3/175 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL L E+F F V V ++ ETG SRG +++M + + A AL
Sbjct: 916 VYVGNLSWGVTDESLAELFSEF-DVRDASVMKDRETGRSRGFAFVSMNNEEDVERASAAL 974
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G +V GRE+RV + R + + E ++Y GNLSW + DL++
Sbjct: 975 NGREVDGRELRVSKAQAQAERGERPMRMPRQRRDFDQAEG-RRVYFGNLSWGMDQYDLQD 1033
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
FG+V +R++ DR +R FGF++ S+ E D ++ LNG D GR + V
Sbjct: 1034 LCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVVAQLNGQDVDGRVLRV 1088
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAA 260
H++YVGNLSW V E L F F V A V+ DR+ +R F F+S ++ D ER A+
Sbjct: 914 HRVYVGNLSWGVTDESLAELFSEF-DVRDASVMKDRETGRSRGFAFVSMNNEEDVER-AS 971
Query: 261 LSLNGTDFRGRTIIVREGVDRTE 283
+LNG + GR + V + + E
Sbjct: 972 AALNGREVDGRELRVSKAQAQAE 994
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y NL D +L ++ FG+V + + +TG SRG G++TM + A + L
Sbjct: 1017 VYFGNLSWGMDQYDLQDLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVVAQL 1076
Query: 162 DGSDVGGREMRVRFS 176
+G DV GR +RV +
Sbjct: 1077 NGQDVDGRVLRVNIA 1091
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 103/188 (54%), Gaps = 10/188 (5%)
Query: 93 PRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
P AR LY+ NL D+SE L E F FG ++S+ ++++ G+S+G G++ +
Sbjct: 184 PGPDARYTNLYMKNL--DLDVSEATLQEKFSSFGKIVSLVIAKD-NNGMSKGFGFVNYDN 240
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVG 208
+ AK A+ A++GS +G + + V + R + +K I Y+ + +YV
Sbjct: 241 PDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSN-IYVK 299
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD 267
N+ V E+LR+HF GT+ SA+++ D KG ++ FGF+ FS+ E + A+ + +G
Sbjct: 300 NIDDHVSDEELRDHFSACGTITSAKIMRDDKG-ISKGFGFVCFSTPEEANKAVNTFHGFM 358
Query: 268 FRGRTIIV 275
+ G+ + V
Sbjct: 359 YHGKPLYV 366
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 17/193 (8%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
P A P LYV +L S L++ F F ++ SV V ++ TG S GYL S
Sbjct: 4 HPSVAAAPASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSP 63
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A AI + S + G+ MRV +S R+ +A S +F V NL
Sbjct: 64 QDAIRAIELKNNSTLNGKAMRVMWS------RRDPDARKSAIGNLF---------VKNLP 108
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270
++ L++ F ++G ++S++V+ G+ ++ +GF+ F S+ A+ LNG
Sbjct: 109 ESIDNAGLQDIFKKYGNILSSKVVTSEDGK-SKGYGFVQFESEESSKVAIEKLNGYTVAD 167
Query: 271 RTIIVREGVDRTE 283
+ + V + V +++
Sbjct: 168 KELYVGKFVKKSD 180
>gi|301119623|ref|XP_002907539.1| nucleolin, putative [Phytophthora infestans T30-4]
gi|262106051|gb|EEY64103.1| nucleolin, putative [Phytophthora infestans T30-4]
Length = 496
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
E D ++V P+ + E+++ LP S E+ E F G V + + G S
Sbjct: 234 QENGDAAAVANPQ---KTLEIFIAGLPWSATEDEVKEHFAGCGEVTGARIPL--QNGRSS 288
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G ++T + +A+ A +A+DG D GGR M++R + N E S
Sbjct: 289 GTAFVTFATSEAAE-AALAMDGQDFGGRWMKIRTAEKKNMFDEKPEGCTS---------- 337
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
+++GNLSW V +R FG G ++S R+ DR+ R FG + F+S D A+
Sbjct: 338 ---VFIGNLSWDVDENTVRETFGECGEILSCRLATDRETGEFRGFGHVDFASTEAVDEAV 394
Query: 262 SLNGTDFRGRTIIV 275
L G+ GR I V
Sbjct: 395 KLAGSYVNGRAIRV 408
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S+D LLE F+ FG V+S +V + TG+S+ G+++ + A+ A+ +
Sbjct: 184 LFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIM 243
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
++ G+++ + R+ +A K +I Y+ + LYV NL ++ E L
Sbjct: 244 HEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVN-LYVKNLDDSIDDEGL 302
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
R F +FG + SA+V+ D G+ ++ FGF+ FSS E A++ +NG F G+ + V
Sbjct: 303 REAFKQFGNITSAKVITDLNGR-SKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYV 358
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F+ G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ + +++ NL ++ + L +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQG---------------NVFIKNLDRSIDNKALYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ FGF+ + SD A+ +NG + + V
Sbjct: 109 TFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFV 161
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R + LYV NL S D L E FK FG + S +V + G S+G G++ S
Sbjct: 277 QERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDL-NGRSKGFGFVCFSS 335
Query: 151 INSAKNAIIALDGSDVGGREMRV 173
A A+ ++G GG+ + V
Sbjct: 336 PEEATKAVTEMNGRIFGGKPLYV 358
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 8/194 (4%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV NL D ++ E+FKPFG V SV + + E G SRG G
Sbjct: 226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFG 282
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA NA+ ++ ++ G+++ V + R + L + K+ Y+
Sbjct: 283 FVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGV 342
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 343 N-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFVCFSSPEEATKAIT 400
Query: 263 -LNGTDFRGRTIIV 275
+N +G+ + V
Sbjct: 401 EMNQRMIQGKPLYV 414
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V GR R+ +S S RN + I ++ NL A+ + L +
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNI---------------FIKNLHPAIDNKALHD 164
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ + +++A A ++NG R + V + V
Sbjct: 165 TFSAFGRILSCKVATDELGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 223
Query: 281 R 281
+
Sbjct: 224 K 224
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 11/207 (5%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+NGK G + +E +A+ +YV NL + D +L EMF+ FG ++S ++
Sbjct: 164 LNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEVFGKIISAKM 223
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
N E G RG G+++ +A A+ L+ +V G+E+ V + R +
Sbjct: 224 M-NTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFE 282
Query: 192 PPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
K +I Y+ + LYV NL + E LR F +FGT+ SARV+ + G T+ FGF+
Sbjct: 283 RMKMERINRYQGVN-LYVKNLDEQIDDERLRKEFSQFGTITSARVMTE--GGRTKGFGFV 339
Query: 250 SFSSDAERDAALSLNGTDFRGRTIIVR 276
FSS E A+ T+ GR ++ +
Sbjct: 340 CFSSPEEATKAV----TEMNGRIVVAK 362
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 19/196 (9%)
Query: 90 VEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+++P+ + P LYV +L + L E F G VLS+ V R+ T S G Y+
Sbjct: 1 MQQPQGPSYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNF 60
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
A+ A+ ++ + GR +R+ +S R+ S IF+
Sbjct: 61 QQPADAERALDTMNFDAIKGRPIRIMWS------QRDPSLRKSGVGNIFIK--------- 105
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTD 267
NL + + L + F FG ++S ++ D+ G +GF+ F + +A R++ +NG
Sbjct: 106 NLDKNIDNKALYDTFSAFGNILSCKIAMDQNGSLG--YGFVHFETEEAARNSIEKVNGML 163
Query: 268 FRGRTIIVREGVDRTE 283
G+ + V + R E
Sbjct: 164 LNGKKVFVGRFMSRKE 179
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 11/204 (5%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132
INGK G V VE + ++V NLP + L +MF FG + SV +
Sbjct: 197 INGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIM 256
Query: 133 RNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISP 192
++ + S+G G++ + A+ A+ AL+G+++ G+ + V + R EA +
Sbjct: 257 KSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVARAQKKAER----EAELKQ 312
Query: 193 PKKIFVYESPHK-----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
E +K LYV NL A+ + +R F FGT+ S +++ D KG+ +R FG
Sbjct: 313 RYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGK-SRGFG 371
Query: 248 FISFSSDAERDAALS-LNGTDFRG 270
FI FSS E A++ +NG +G
Sbjct: 372 FICFSSAEEATKAVTEMNGQTIQG 395
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 87/183 (47%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D LL+ F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 135 VFIKNLDKTIDNKALLDTFSAFGNILSCKVVTD-ENG-SKGYGFVHYETQEAAETAIAKV 192
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V + R E + F ++V NL L +
Sbjct: 193 NGMVINGKQVFVGIFVPRKERVELGEGVTK-----FT-----NVFVKNLPEDTTDAALND 242
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + S ++ ++ FGF+ + + AA+ +LNGT+ G+T+ V
Sbjct: 243 MFSKFGKITSVVIMKSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVARAQK 302
Query: 281 RTE 283
+ E
Sbjct: 303 KAE 305
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L ++L E+F G V+S+ V R+ T S G Y+ + A+ A+ L
Sbjct: 47 LYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDTL 106
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S R+ S +F+ NL + + L +
Sbjct: 107 NYSLIRGKPCRIMWS------QRDPAVRKSGLGNVFIK---------NLDKTIDNKALLD 151
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ + + +A A +NG G+ + V V
Sbjct: 152 TFSAFGNILSCKVVTDENG--SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVP 209
Query: 281 RTE 283
R E
Sbjct: 210 RKE 212
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D ++ F PFGT+ SV++ R+ E G SRG G++ S A A+ +
Sbjct: 330 LYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRD-EKGKSRGFGFICFSSAEEATKAVTEM 388
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAE 187
+G + G + ++ + R A+
Sbjct: 389 NGQTIQGFPKPLYVALAQRAEDRRAQ 414
>gi|255646669|gb|ACU23808.1| unknown [Glycine max]
Length = 125
Score = 83.6 bits (205), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 13/129 (10%)
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
M I I L+G + GR +RV FS S+ + PK+ E+ HKL+V
Sbjct: 1 MSCIEDCNAVIENLNGKEFLGRTLRVNFS----SKPK--------PKEPLYPETEHKLFV 48
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNLSW+V E L F +GTVV ARVL+D + +R +GF+ +S+ AE +AA+ +LN
Sbjct: 49 GNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDV 108
Query: 267 DFRGRTIIV 275
+ GR + V
Sbjct: 109 ELEGRAMRV 117
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 59 LAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP---CELYVCNLPRSFDISE 115
++ +++ V+E+ +NGK+ +G + SS +P+ P +L+V NL S
Sbjct: 1 MSCIEDCNAVIEN-LNGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEI 59
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L + F+ +GTV+ V + ETG SRG G++ + + A+ AL+ ++ GR MRV
Sbjct: 60 LTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVELEGRAMRVSL 119
Query: 176 S 176
+
Sbjct: 120 A 120
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 92/186 (49%), Gaps = 19/186 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ NL S D L E F FG VLS +V+ + G S+G G++ + SAKNAI
Sbjct: 113 ANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIE 171
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
LDG + +++ V + + R S PK VY V NLS + EDL
Sbjct: 172 KLDGRLMNDKKVYVGYFVRCQER--------SSPKFTNVY-------VKNLSESYTNEDL 216
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG-TDFRGRTIIVRE 277
+ F FG + S +++ D G + R FGF++F SSD+ A LNG T G+ + V
Sbjct: 217 KQLFNTFGVITSVKIMKDENGNSKR-FGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGR 275
Query: 278 GVDRTE 283
++E
Sbjct: 276 AQKKSE 281
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 7/178 (3%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+ RS + +YV NL S+ +L ++F FG + SV++ ++ E G S+ G++ S
Sbjct: 192 QERSSPKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKD-ENGNSKRFGFVNFQSS 250
Query: 152 NSAKNAIIALDGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVG 208
+SA A+ L+GS G+ + V + + R +A +K+ YE LY+
Sbjct: 251 DSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQ-EKLKRYEKFQGANLYLK 309
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
N+ ++ E L+ F FGT+ S +V+ D +G++ V GF++F++ E A+ +NG
Sbjct: 310 NIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGV-GFVAFTTPEEASKAIDEMNG 366
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + ++L ++F V+SV V R+ T S G GY+ + A NA+ L
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ FS + + LI K F L++ NL ++ + L
Sbjct: 87 NYVPLNGKPIRIMFS--------HRDPLIR--KTGFA-----NLFIKNLETSIDNKALHE 131
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
F FG V+S +V D G ++ GF+ F +D + ++A L+G + + V
Sbjct: 132 TFSVFGNVLSCKVAMDSNGH-SKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYV 185
>gi|145348372|ref|XP_001418624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578854|gb|ABO96917.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 151
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 80/148 (54%), Gaps = 16/148 (10%)
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI 196
TG SRG ++T+ S + A+ A +G DV GRE+RV S+ + A P ++
Sbjct: 5 TGRSRGFAFVTLASAEDMERAMAATNGVDVDGRELRV-------SQAQTAGERRDRPMRM 57
Query: 197 FVYESPHK--------LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
P + +Y GNLSW + DL++ G FG+V +R++ DR+ +R FGF
Sbjct: 58 DGERRPQRNRDADNRRVYFGNLSWGMDHLDLQDLCGEFGSVEDSRLITDRETGRSRGFGF 117
Query: 249 ISFSSDAERDAALS-LNGTDFRGRTIIV 275
++ SS+AE D ++ LNG D GR + V
Sbjct: 118 VTMSSEAEADEVVAQLNGQDVDGRVLRV 145
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y NL D +L ++ FG+V + + ETG SRG G++TM S A + L
Sbjct: 74 VYFGNLSWGMDHLDLQDLCGEFGSVEDSRLITDRETGRSRGFGFVTMSSEAEADEVVAQL 133
Query: 162 DGSDVGGREMRV 173
+G DV GR +RV
Sbjct: 134 NGQDVDGRVLRV 145
>gi|348680071|gb|EGZ19887.1| hypothetical protein PHYSODRAFT_489640 [Phytophthora sojae]
Length = 536
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 2/181 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+++V LP D L E FK FG + +V + +TG S+G G++T ++A +A+
Sbjct: 12 KVFVAGLPSHVDDDALYEKFKSFGEMHQSKVVYDQKTGRSKGFGFVTFCEYSNALDAVDQ 71
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPHKLYVGNLSWAVKPED 218
L+ S R + VRF N NA + + P K+ E +YVGNL++ + E
Sbjct: 72 LNQSKWDKRTLNVRFLQPKNGSGANAATVSNRPAKVIGPRPEGCTTIYVGNLAYDITEEV 131
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
LR F + G++ + R + + R FG++ F + +AA+ L+G GR + + G
Sbjct: 132 LRKVFDKCGSIRAVRFAEHIQTKEFRGFGYVQFHEEGPCEAAVKLDGMVVMGRPMNIDYG 191
Query: 279 V 279
Sbjct: 192 A 192
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
++ +K++V L V + L F FG + ++V++D+K ++ FGF++F +
Sbjct: 6 LWRDRNKVFVAGLPSHVDDDALYEKFKSFGEMHQSKVVYDQKTGRSKGFGFVTFCEYSNA 65
Query: 258 -DAALSLNGTDFRGRTIIVR 276
DA LN + + RT+ VR
Sbjct: 66 LDAVDQLNQSKWDKRTLNVR 85
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 102/188 (54%), Gaps = 10/188 (5%)
Query: 93 PRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
P AR LY+ NL D+SE L E F FG ++S+ ++++ G+S+G G++ +
Sbjct: 184 PGPDARYTNLYMKNL--DLDVSEATLQEKFSSFGKIVSLVIAKD-NIGMSKGFGFVNYDN 240
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVG 208
+ AK A+ A++GS +G + + V + R + +K I Y+ + +YV
Sbjct: 241 PDDAKRAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSN-IYVK 299
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD 267
N+ V E+LR+HF G + SA+++ D KG ++ FGF+ FS+ E + A+ + +G
Sbjct: 300 NIDDHVSDEELRDHFSACGIITSAKIMRDDKG-ISKGFGFVCFSTPEEANKAVNTFHGFM 358
Query: 268 FRGRTIIV 275
F G+ + V
Sbjct: 359 FHGKPLYV 366
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 17/192 (8%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A P LYV +L + + L++ F F ++ SV V ++ TG S GY+ S
Sbjct: 5 PSVAAAPASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQ 64
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A AI + S + G+ MRV +S +NA L+V NL
Sbjct: 65 DAIRAIELKNNSTLNGKAMRVMWSRRDPDARKNAIG---------------NLFVKNLPE 109
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
++ L++ F ++G ++S++V+ G+ ++ +GF+ F S+ + A+ LNG+ +
Sbjct: 110 SIDNAGLQDMFKKYGNILSSKVVMSEDGK-SKGYGFVQFESEESSNVAIEKLNGSTVGDK 168
Query: 272 TIIVREGVDRTE 283
+ V + V +++
Sbjct: 169 QLYVGKFVKKSD 180
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 89/168 (52%), Gaps = 14/168 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D LL+ F FGTVLS +++ + G S+G G++ +A+NAI L
Sbjct: 563 VFIKNLDPSIDNKALLDTFAAFGTVLSCKIALD-NNGQSKGYGFVQFEQEEAAQNAIKRL 621
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R R + PK VY V NLS +DL+N
Sbjct: 622 NGMLINDKQVYVGLFVRHQERNRGNGS----PKFTNVY-------VKNLSETTTDDDLKN 670
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDF 268
FG++G++ SA V+ D G ++ FGF++F SSD+ A LNG F
Sbjct: 671 IFGKYGSITSAVVMRDASG-MSKCFGFVNFQSSDSAAAAVEHLNGATF 717
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + +L ++F+ VLS+ V R+ S G Y+ S A NA+ L
Sbjct: 475 LYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHL 534
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ +R+ FS S ++ A +++ NL ++ + L +
Sbjct: 535 NFTPLNGKPIRIMFSHRDPSIRKSGFA---------------NVFIKNLDPSIDNKALLD 579
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FGTV+S ++ D GQ ++ +GF+ F +A ++A LNG + + V
Sbjct: 580 TFAAFGTVLSCKIALDNNGQ-SKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYV 633
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L +F +G++ S V R+ +G+S+ G++ S +SA A+ L
Sbjct: 654 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRD-ASGMSKCFGFVNFQSSDSAAAAVEHL 712
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--------LYVGNLSWA 213
+G+ ++ + + R EA + + F E +K LY+ NL +
Sbjct: 713 NGATFNDDKV---WYVGKAQRKSEREAEL---RAKFEQERKNKFEKFKGTNLYLKNLDDS 766
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
V E L+ F FGT+ S +V+ D +G ++ GF++F + E AL++ GR
Sbjct: 767 VNDEKLKELFSEFGTITSCKVMLDPQG-LSKGSGFVAFLTPEEATRALNVMNGKMIGRKP 825
Query: 274 IVREGVDRTE 283
+ R E
Sbjct: 826 LYVAVAQRKE 835
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 89/170 (52%), Gaps = 14/170 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D LL+ F FGTVLS +++ + G S+G G++ +A+NAI
Sbjct: 101 ANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALD-NNGQSKGYGFVQFEQEEAAQNAIK 159
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R R + PK VY V NLS +DL
Sbjct: 160 RLNGMLINDKQVYVGLFVRHQERNRGNGS----PKFTNVY-------VKNLSETTTDDDL 208
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDF 268
+N FG++G++ SA V+ D G ++ FGF++F SSD+ A LNG F
Sbjct: 209 KNIFGKYGSITSAVVMRDASG-MSKCFGFVNFQSSDSAAAAVEHLNGATF 257
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + +L ++F+ VLS+ V R+ S G Y+ S A NA+
Sbjct: 13 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 72
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ + + G+ +R+ FS S ++ A +++ NL ++ + L
Sbjct: 73 HLNFTPLNGKPIRIMFSHRDPSIRKSGFA---------------NVFIKNLDPSIDNKAL 117
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
+ F FGTV+S ++ D GQ ++ +GF+ F +A ++A LNG + + V
Sbjct: 118 LDTFAAFGTVLSCKIALDNNGQ-SKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYV 173
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 16/190 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L +F +G++ S V R+ +G+S+ G++ S +SA A+ L
Sbjct: 194 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRD-ASGMSKCFGFVNFQSSDSAAAAVEHL 252
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--------LYVGNLSWA 213
+G+ ++ + + R EA + + F E +K LY+ NL +
Sbjct: 253 NGATFNDDKV---WYVGKAQRKSEREAEL---RAKFEQERKNKFEKFKGTNLYLKNLDDS 306
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
V E L+ F FGT+ S +V+ D +G ++ GF++F + E AL++ GR
Sbjct: 307 VNDEKLKELFSEFGTITSCKVMLDPQG-LSKGSGFVAFLTPEEATRALNVMNGKMIGRKP 365
Query: 274 IVREGVDRTE 283
+ R E
Sbjct: 366 LYVAVAQRKE 375
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 8/194 (4%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV NL D ++ E+FKPFG V SV + + E G SRG G
Sbjct: 226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFG 282
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA NA+ ++ ++ G+++ V + R + L + K+ Y+
Sbjct: 283 FVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGV 342
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 343 N-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFVCFSSPEEATKAIT 400
Query: 263 -LNGTDFRGRTIIV 275
+N +G+ + V
Sbjct: 401 EMNQRMIQGKPLYV 414
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V GR R+ +S S RN + I ++ NL A+ + L +
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNI---------------FIKNLHPAIDNKALHD 164
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ + +++A A ++NG R + V + V
Sbjct: 165 TFSAFGRILSCKVATDELGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 223
Query: 281 R 281
+
Sbjct: 224 K 224
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+S+ E S+ + L+V NL S D +L E FKPFGT+ S V + + G S+G G++
Sbjct: 329 ESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFV 387
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A AI ++ + G+ + V + + R E I
Sbjct: 388 CFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQ 432
>gi|328768982|gb|EGF79027.1| hypothetical protein BATDEDRAFT_12759 [Batrachochytrium
dendrobatidis JAM81]
Length = 820
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 7/198 (3%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
VD DS E+ S L+V LP + +L E F G V S +++ TG+S GC
Sbjct: 51 VDVDSDGEDTSSVYSKSTLFVSTLPFTAKADDLEEFFSQIGPVRSCFIAKQKLTGLSSGC 110
Query: 144 GYLTMGSINSAKNAIIALDGSD-VGGREMR----VRFSIDMNSRTRNAEALISPPKKIFV 198
GY+ A+ A++ L +GGR ++ +R SI + ++ A I +
Sbjct: 111 GYVHFALAEDAQRALVELKKQKFMGGRTLKMKIALRKSIVVQRKSGKPRATIKSVIEPTK 170
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAER 257
+ +L + NLS+ KPE+L+N F FG V V H G+ R FGF+ F + D +
Sbjct: 171 AKQRARLIIRNLSFNCKPENLQNVFSAFGIVKDCSVPHLDDGK-ARGFGFVEFETMDCAQ 229
Query: 258 DAALSLNGTDFRGRTIIV 275
A ++NGT R + V
Sbjct: 230 RALQAVNGTKILNRPVAV 247
>gi|300120130|emb|CBK19684.2| unnamed protein product [Blastocystis hominis]
Length = 309
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 104 VCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG 163
V +P SFD L E FK G + V RN +T +SRG G++ + +A +A+DG
Sbjct: 8 VFGIPWSFDNDALYEFFKGCGAISDCYVIRNKKTNLSRGFGFVHFED-KAGMDACLAMDG 66
Query: 164 SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHF 223
++ GR +++ S + T +E Y +K+ V LSW E L +
Sbjct: 67 TECEGRTLKITISDKERAPTPRSE-----------YNDKNKVIVNCLSWNTTSESLAEYL 115
Query: 224 GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281
++G + +VL+D K Q +R F ++A+ A+ ++N DF GR I + + + R
Sbjct: 116 SQYGELEDCKVLYDNKTQHSRGLAVARFKNEADMLRAIDAVNEKDFEGRVITIHQFLPR 174
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 12/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL L E F FG + S+ +SR+ E G+SRG G++ + + AK A+ L
Sbjct: 195 LYVKNLDPEIGEEHLQEKFSEFGKISSMIISRD-ENGVSRGFGFINFENSDDAKRALETL 253
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEAL-----ISPPKKIFVYESPHKLYVGNLSWAVKP 216
+GS +G + V + +T E L +++ Y+ + +YV N+ V
Sbjct: 254 NGSQLGSK---VIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSN-VYVKNIDDDVTD 309
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
E+LR F +FGT+ S++++ D KG + FGF+ FS+ D + A +L G F G+ + +
Sbjct: 310 EELRERFSQFGTITSSKLMRDDKG-INKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYL 368
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 100/197 (50%), Gaps = 17/197 (8%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
++V +P + A P LYV +L +L + F F ++ SV + R+ TG S GY+
Sbjct: 2 AAVSQPTAHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVN 61
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S A NAI ++ S + GR +RV +S R+A+A S +F V
Sbjct: 62 FISPQDATNAIEVMNHSMLNGRAIRVMWS------RRDADARKSGIGNVF---------V 106
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
NLS ++ L+ F +FG V+S++V G+ ++ +GF+ F S+ +AA+ SLNG
Sbjct: 107 KNLSDSINSLGLQELFKKFGNVLSSKVATSDDGK-SKGYGFVQFESEESANAAIESLNGF 165
Query: 267 DFRGRTIIVREGVDRTE 283
+ I V + V +++
Sbjct: 166 TVGDKQIYVGKFVRKSD 182
>gi|255636284|gb|ACU18482.1| unknown [Glycine max]
Length = 280
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 6/167 (3%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +++V NLP D L +F GTV EV N T SRG G++TM ++ K
Sbjct: 113 KAEEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELK 172
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A+ G ++ GR + V N PP+ + S ++YVGNL W V
Sbjct: 173 KAVEMFSGYELNGRVLTV------NKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVD 226
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L F G V ARV++DR+ +R FGF++ SS+ + + A++
Sbjct: 227 DARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIA 273
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
K++VGNL + + E+L + FG+ GTV A V+++R +R FGF++ S+ E A+ +
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
Query: 264 -NGTDFRGRTIIVREGVDR 281
+G + GR + V + +
Sbjct: 178 FSGYELNGRVLTVNKAAPK 196
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D + L ++F G V V + ETG SRG G++TM S +AI AL
Sbjct: 216 VYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAAL 275
Query: 162 D 162
D
Sbjct: 276 D 276
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 98/177 (55%), Gaps = 5/177 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S+D LL+ F+ FG V+S +V + TG+S+ G+++ + A+ A+ +
Sbjct: 184 LFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIM 243
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
++ G+++ + R+ +A K +I Y+ + LYV NL ++ E L
Sbjct: 244 HEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVN-LYVKNLDDSIDDEGL 302
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
R F +FG + SA+V+ D G+ ++ FGF+ FSS E A++ +NG F G+ + V
Sbjct: 303 REAFKQFGNITSAKVITDLNGR-SKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYV 358
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F+ G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ + +++ NL ++ + L +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQG---------------NVFIKNLDRSIDNKALYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ FGF+ + SD A+ +NG + + V
Sbjct: 109 TFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFV 161
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R + LYV NL S D L E FK FG + S +V + G S+G G++ S
Sbjct: 277 QERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDL-NGRSKGFGFVCFSS 335
Query: 151 INSAKNAIIALDGSDVGGREMRV 173
A A+ ++G GG+ + V
Sbjct: 336 PEEATKAVTEMNGRIFGGKPLYV 358
>gi|326512286|dbj|BAJ96124.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 27/221 (12%)
Query: 58 VLAVVDEEAV--VVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
+ A DE AV V E E + V EV + + E Y C E
Sbjct: 32 IAAAADERAVEQVQEQETPEEPAVAAAEVGEGA------------ESYECE-------EE 72
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-R 174
+ E+F FG + S+++SR P++G RG ++T S A + + LDG +G R MRV R
Sbjct: 73 IRELFDRFGPIRSLQLSRFPDSGNFRGLAFVTFESDEVALKS-LELDGYKIGNRFMRVER 131
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
I +S+ + S P+K + YVGNLSW + +DLR+ F + + S R
Sbjct: 132 CRITASSKRQKKTEFQSDPEKP---DGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRF 187
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
D++ +R F + F D + A+ +N ++ RGR + +
Sbjct: 188 AIDKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPVKI 228
>gi|242076980|ref|XP_002448426.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
gi|241939609|gb|EES12754.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
Length = 278
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 16/174 (9%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP SF E+ ++F GTV VEV + + G +RG ++TM + A A
Sbjct: 76 KLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKG-KDGRNRGFAFVTMSTTEEAAAAAEK 134
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ DV GR ++V F SR+ A + P + E HKLYV NL W + +++
Sbjct: 135 LNSHDVMGRTIKVEF-----SRSFRKPAPLPP-----IIER-HKLYVSNLPWKARAPNVK 183
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 273
F +F +SA V+ D + F+SF + E +AAL+ L+G + GR +
Sbjct: 184 EFFAKFNP-LSANVIFDNGKAAG--YCFVSFGTKEEAEAALTELDGKELMGRPV 234
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERD 258
E KLYV NL W+ ++ F + GTV V+ + G+ R F F++ S ++
Sbjct: 72 EKRRKLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKDGR-NRGFAFVTMSTTEEAAA 130
Query: 259 AALSLNGTDFRGRTIIV 275
AA LN D GRTI V
Sbjct: 131 AAEKLNSHDVMGRTIKV 147
>gi|226532724|ref|NP_001151236.1| RNA binding protein [Zea mays]
gi|195645238|gb|ACG42087.1| RNA binding protein [Zea mays]
Length = 257
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 6/178 (3%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++ LP + +++ ++F+ +G + S+++SR P++G RG +L S A ++
Sbjct: 77 PGKVVASGLPYTTTEADIRKLFEFYGPIQSMQLSRFPDSGNFRGLAFLCFESEEDAIKSL 136
Query: 159 IALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
LDG +G R MRV R + S + + PKK E YVGNLSW V
Sbjct: 137 -ELDGFKIGSRYMRVERCRVTATSNKKRKAEFETDPKK---SEGCLSAYVGNLSWNVDEN 192
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
DLR FG + S R D++ +R F + F D + A+++N + +GR + V
Sbjct: 193 DLRGFFGP-SKIASVRFAVDKRTGGSRGFCHVEFQDDESLEKAIAMNQSKLQGRPVKV 249
>gi|194697124|gb|ACF82646.1| unknown [Zea mays]
gi|414864467|tpg|DAA43024.1| TPA: RNA binding protein [Zea mays]
Length = 257
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 6/178 (3%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++ LP + +++ ++F+ +G + S+++SR P++G RG +L S A ++
Sbjct: 77 PGKVVASGLPYTTTEADIRKLFEFYGPIQSMQLSRFPDSGNFRGLAFLCFESEEDAIKSL 136
Query: 159 IALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
LDG +G R MRV R + S + + PKK E YVGNLSW V
Sbjct: 137 -ELDGFKIGSRYMRVERCRVTATSNKKRKAEFETDPKK---SEGCLSAYVGNLSWNVDEN 192
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
DLR FG + S R D++ +R F + F D + A+++N + +GR + V
Sbjct: 193 DLRGFFGP-SKIASVRFAVDKRTGGSRGFCHVEFQDDESLEKAIAMNQSKLQGRPVKV 249
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + L +F +GTV SV V R+ G SRG G++ +AK A+ +L
Sbjct: 202 VYVKNLIENITEDILHRLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCHPENAKKAVDSL 260
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK---LYVGNLSWAVKPED 218
G VG + + V ++ + R E L + F+ +S + LYV NLS ++
Sbjct: 261 HGRQVGSKTLFVGKALKRDERR---EMLKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTT 317
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVR 276
LR FGR+G +VSA+V+ G+ ++ FGF+ FS+ E + A LNG G+ ++VR
Sbjct: 318 LREIFGRYGQIVSAKVMRHENGR-SKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVR 375
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 92/191 (48%), Gaps = 15/191 (7%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R R LYV NL S S L MF PFG +LS +V E G S+G G++ + S
Sbjct: 104 RRRTGFGNLYVKNLDISITSSGLERMFNPFGVILSCKVVE--ENGQSKGFGFVQFETEQS 161
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A A AL GS V G+++ V I+ N R A K F +YV NL
Sbjct: 162 AVTARSALHGSMVDGKKLFVAKFINKNERVAMA------GNKGFT-----NVYVKNLIEN 210
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRT 272
+ + L F ++GTV S V+ D G+ +R FGF++F + + A SL+G +T
Sbjct: 211 ITEDILHRLFSQYGTVSSVVVMRDGMGR-SRGFGFVNFCHPENAKKAVDSLHGRQVGSKT 269
Query: 273 IIVREGVDRTE 283
+ V + + R E
Sbjct: 270 LFVGKALKRDE 280
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 19/200 (9%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ ++E + + LYV +L +L+ F VLSV + RN TG S Y
Sbjct: 7 ETQALENHQHSSMFASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAY 66
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHK 204
+ S SA NA+ L+ +D+ G+ MR+ +S D++ R R
Sbjct: 67 INFDSPFSASNAMARLNHTDLKGKAMRIMWSQRDLSYRRRTGFG---------------N 111
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYV NL ++ L F FG ++S +V+ + GQ ++ FGF+ F ++ A S L
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVV-EENGQ-SKGFGFVQFETEQSAVTARSAL 169
Query: 264 NGTDFRGRTIIVREGVDRTE 283
+G+ G+ + V + +++ E
Sbjct: 170 HGSMVDGKKLFVAKFINKNE 189
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+S R LYV NL S + + L E+F +G ++S +V R+ E G S+G G++ +
Sbjct: 296 KSNMRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVMRH-ENGRSKGFGFVCFSNREE 354
Query: 154 AKNAIIALDGSDVGGREMRVR 174
+K A L+G V G+ + VR
Sbjct: 355 SKQAKRYLNGFSVDGKLLVVR 375
>gi|388504962|gb|AFK40547.1| unknown [Lotus japonicus]
Length = 285
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 9/178 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV LP S +++ ++F GTV VE+ R + G +G ++TM S A+ A+
Sbjct: 87 KLYVFTLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
D ++ GR +RV + R + P E+ H +Y NL+W V+ LR
Sbjct: 146 FDTLELSGRILRVELA------KRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRSTHLR 199
Query: 221 NHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F F +SAR++ D +GFIS+ + E +AA+S L+G + GR++ ++
Sbjct: 200 EFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLK 257
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 14/166 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L E F FGTVLS +V+ + G S+G G++ + SA+ AI L
Sbjct: 135 VFIKNLDSTLDNKLLHETFAAFGTVLSCKVAVD-SNGQSKGYGFVQFENEESAERAISFL 193
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +++ V F + RTR + PK VY V NLS + EDL
Sbjct: 194 DGMCLNDKQVYVGFFVRQQERTRTNGS----PKFTNVY-------VKNLSETITNEDLEK 242
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
FG +GT+ SA V+ D+ G+ +R FGF++F D+ A LNGT
Sbjct: 243 VFGVYGTITSALVMKDQTGK-SRGFGFVNFQDPDSAAAAVEKLNGT 287
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L ++ + +L ++F V+SV V R+ S G GY+ + A NA+ AL
Sbjct: 47 LYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKAL 106
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ +R+ FS S ++ +++ NL + + L
Sbjct: 107 NFTPLNGKPIRIMFSHRDPSIRKSGYG---------------NVFIKNLDSTLDNKLLHE 151
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F FGTV+S +V D GQ ++ +GF+ F ++ + A+S L+G + + V
Sbjct: 152 TFAAFGTVLSCKVAVDSNGQ-SKGYGFVQFENEESAERAISFLDGMCLNDKQVYV 205
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 89/194 (45%), Gaps = 35/194 (18%)
Query: 91 EEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E R+ P +YV NL + +L ++F +GT+ S V ++ +TG SRG G++
Sbjct: 213 ERTRTNGSPKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKD-QTGKSRGFGFVNF 271
Query: 149 GSINSAKNAIIALDGSDVG-------GR---------EMRVRFSIDMNSRTRNAEALISP 192
+SA A+ L+G+ GR E++ +F + NSR +A
Sbjct: 272 QDPDSAAAAVEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAA--- 328
Query: 193 PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
LY+ NL + L+ F FG++ S +V+ D +G ++ GF++FS
Sbjct: 329 -----------NLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQG-VSKGSGFVAFS 376
Query: 253 SDAERDAALS-LNG 265
+ E AL +NG
Sbjct: 377 TPEEASRALKEMNG 390
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LY+ NL + + +L E+F FG++ S +V + + G+S+G G++ + A
Sbjct: 324 RLKAANLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQ-GVSKGSGFVAFSTPEEAS 382
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR----------TRNAEALISPPKKIFVYE----- 200
A+ ++G +G + + V + R R AL P I Y
Sbjct: 383 RALKEMNGKMIGRKPLYVAIAQRKEERKARLQAHFALVRAPGALAPLPSGIPGYNAGAPR 442
Query: 201 -SPHKLYVGNLSWAVKP 216
+P +LY G + + P
Sbjct: 443 LAPQQLYFGQGTPGMMP 459
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 13/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +LL +F+ +G + S +V + ++G +RG G+++ +SA+ A+ L
Sbjct: 194 VYIKNFGDELDDDKLLVIFEKYGKITSAKVMTD-DSGKNRGFGFVSFEEPDSAERAVEEL 252
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+GGR + V + R R+ E L +++ Y+ + LYV NL A+ E
Sbjct: 253 NGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQ--ERLNRYQGVN-LYVKNLDDALDDE 309
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR FG FG + SA+V+ D G+ ++ FGF+ FSS E A+ T+ GR ++ +
Sbjct: 310 RLRKEFGPFGNITSAKVMTDANGR-SKGFGFVCFSSPEEATKAV----TEMNGRIVVSK 363
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDAIKNKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKTIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S RV D + ++ +GF+ F ++ + A+S +NG + + V + +
Sbjct: 118 TFSAFGNILSCRVATDEEA-ASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 71 DEINGKDNVGG---------NEVDDDSSV--------EEPRSRARPCELYVCNLPRSFDI 113
+E+NGKD +GG + + S + +E +R + LYV NL + D
Sbjct: 250 EELNGKD-MGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDD 308
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
L + F PFG + S +V + G S+G G++ S A A+ ++G V + + V
Sbjct: 309 ERLRKEFGPFGNITSAKVMTD-ANGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYV 367
Query: 174 RFS 176
+
Sbjct: 368 ALA 370
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 207
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + I R E + K F +YV N++ V ED R
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEM----KANFT-----NVYVKNIAPDVTDEDFRQ 258
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG V S+ + D++G+ TR FGF++F++ +A A LNG DFRG+ + V
Sbjct: 259 LFEKFGDVTSSSLARDQEGK-TRGFGFVNFTTHEAAFKAVEELNGKDFRGQDLYVGRAQK 317
Query: 281 RTE 283
+ E
Sbjct: 318 KHE 320
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 28/228 (12%)
Query: 60 AVVDEEAVVVED-EINGKDNVGGNEVD-------DDSSVEEPRSRARP---CELYVCNLP 108
A VD+ A + + +NG +V +D +D+S P + P LYV L
Sbjct: 8 AAVDQLASDLNNTSLNGSGDVKAPAIDTSVSAGAEDASAPTPTAAPHPQNSASLYVGELD 67
Query: 109 RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168
S + L E+F G V S+ V R+ T S G Y+ S + A+ L+ + + G
Sbjct: 68 PSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNYTLIKG 127
Query: 169 REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT 228
R R+ +S + + + +++ NL A+ + L + F FG
Sbjct: 128 RPCRIMWSQRDPALRKTGQG---------------NVFIKNLDVAIDNKALHDTFAAFGN 172
Query: 229 VVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
++S +V D G ++ +GF+ + +D A A +NG + + V
Sbjct: 173 ILSCKVAQDENG-NSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 219
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + ++F+ FG V S ++R+ E G +RG G
Sbjct: 227 DRQSKFEE--MKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQE-GKTRGFG 283
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +A A+ L+G D G+++ V + + R + K Y+
Sbjct: 284 FVNFTTHEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 343
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NL V E LR F FG + SA+V+ D
Sbjct: 344 N-LYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRD 377
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAYETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + KK +ES LYV NL ++ E
Sbjct: 244 NGKDMGDGKTLYVARAQKKAERQQELKRKFEELKKK-RHESVFGVNLYVKNLDDSIDDER 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ SA+V+ D +G+ ++ FGF+ F S E A+ T+ GR I
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGR-SKGFGFVCFISPNEATCAV----TELNGRVI 352
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLIRDKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG T++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVATDEKG-TSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTD-EEGRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G +G + + V +
Sbjct: 348 NGRVIGSKPLYVALA 362
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 99/183 (54%), Gaps = 14/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +++ +P +G SRG G++ SA++AI L
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESAQSAIDKL 183
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R ++ E + S K +YV NLS V ++L+
Sbjct: 184 NGMLINDKKVFVGPFV----RKQDRENVSSNIKF-------SNVYVKNLSDTVTDDELKE 232
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
FG++GT+ SA V+ D G+ +R FGF++F ++DA A LNG F + + V
Sbjct: 233 MFGKYGTITSAVVMRDSDGK-SRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQK 291
Query: 281 RTE 283
++E
Sbjct: 292 KSE 294
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +V+E + + LY+ NL + D +L E+F +G + S +V R+ G+SRG G++
Sbjct: 304 EKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRD-SNGVSRGSGFV 362
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++G VG + + V + R +A S
Sbjct: 363 AFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFS 407
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L +V+ L + F + G VVS RV D + + + ++++++ + AL L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 264 NGTDFRGRTIIV 275
N T G+ I +
Sbjct: 97 NFTPINGKPIRI 108
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 99/183 (54%), Gaps = 14/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +++ +P +G SRG G++ SA++AI L
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESAQSAIDKL 183
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R ++ E + S K +YV NLS V ++L+
Sbjct: 184 NGMLINDKKVFVGPFV----RKQDRENVSSNIKF-------SNVYVKNLSDTVTDDELKE 232
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
FG++GT+ SA V+ D G+ +R FGF++F ++DA A LNG F + + V
Sbjct: 233 MFGKYGTITSAVVMRDSDGK-SRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQK 291
Query: 281 RTE 283
++E
Sbjct: 292 KSE 294
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +V+E + + LY+ NL + D +L E+F +G + S +V R+ G+SRG G++
Sbjct: 304 EKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRD-SNGVSRGSGFV 362
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++G VG + + V + R +A S
Sbjct: 363 AFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFS 407
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L +V+ L + F + G VVS RV D + + + ++++++ + AL L
Sbjct: 37 LYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALELL 96
Query: 264 NGTDFRGRTIIV 275
N T G+ I +
Sbjct: 97 NFTPINGKPIRI 108
>gi|294933049|ref|XP_002780572.1| Heterogeneous nuclear ribonucleoprotein D0, putative [Perkinsus
marinus ATCC 50983]
gi|239890506|gb|EER12367.1| Heterogeneous nuclear ribonucleoprotein D0, putative [Perkinsus
marinus ATCC 50983]
Length = 540
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 12/216 (5%)
Query: 65 EAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFG 124
EA EDE + N+ SVE +S ++V NLP S L ++F G
Sbjct: 265 EATTEEDEAPAQKKAKLNDGSAQESVERSKS------VFVGNLPFSMTKEWLEQIFSWCG 318
Query: 125 TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTR 184
+ V + + E+G +G +L +SA+ A+ +G D GR++RV +S N
Sbjct: 319 DIERVSLPTDWESGKIKGFAFLDFADEDSAEKAV-GKNGEDCEGRDLRVNYSFPKNDNAH 377
Query: 185 NAEALISPPKKIF-----VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
+ + K + E ++VGNL W++ E L FG G++ + DR+
Sbjct: 378 SGKGKGGKGKGKGKGHHELGEKSASVFVGNLPWSMTQEWLSEVFGDCGSITRCFMPTDRE 437
Query: 240 GQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
R F +I F ++ + A L+GTD GR I V
Sbjct: 438 TGNPRGFAYIDFDTEDSAEKATKLSGTDLEGRQIRV 473
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 14/170 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D LL+ F FGTVLS +++ + G S+G G++ +A+NAI
Sbjct: 127 ANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALD-NNGQSKGYGFVQFEQEEAAQNAIK 185
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R + PK VY V NLS +DL
Sbjct: 186 RLNGMLINDKQVYVGLFVRHQERNXGNGS----PKFTNVY-------VKNLSETTTDDDL 234
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDF 268
+N FG++G++ SA V+ D G ++ FGF++F SSD+ A LNG F
Sbjct: 235 KNIFGKYGSITSAVVMRDASG-MSKCFGFVNFQSSDSAAAAVEHLNGATF 283
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + +L ++F+ VLS+ V R+ S G Y+ S A NA+
Sbjct: 39 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 98
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ + + G+ +R+ FS S ++ A +++ NL ++ + L
Sbjct: 99 HLNFTPLNGKPIRIMFSHRDPSIRKSGFA---------------NVFIKNLDPSIDNKAL 143
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
+ F FGTV+S ++ D GQ ++ +GF+ F +A ++A LNG + + V
Sbjct: 144 LDTFAAFGTVLSCKIALDNNGQ-SKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYV 199
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 88/190 (46%), Gaps = 16/190 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L +F +G++ S V R+ +G+S+ G++ S +SA A+ L
Sbjct: 220 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRD-ASGMSKCFGFVNFQSSDSAAAAVEHL 278
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--------LYVGNLSWA 213
+G+ ++ + + R EA + + F E +K LY+ NL +
Sbjct: 279 NGATFNDDKV---WYVGKAQRKSEREAEL---RAKFEQERKNKFEKFKGXNLYLKNLDDS 332
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
V E L F FGT+ S +V+ D +G ++ GF++F + E AL++ GR
Sbjct: 333 VNDEKLXELFSEFGTITSCKVMLDPQG-LSKGSGFVAFLTPEEATRALNVMNGKMIGRKP 391
Query: 274 IVREGVDRTE 283
+ R E
Sbjct: 392 LYVAVAQRKE 401
>gi|325179817|emb|CCA14220.1| RNA binding protein putative [Albugo laibachii Nc14]
Length = 360
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/180 (33%), Positives = 93/180 (51%), Gaps = 23/180 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTV---LSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+YV NL +L + + G V + +EV G S+GCG +T + + A+NAI
Sbjct: 72 VYVGNLSWKVKWQDLKDHMRSAGDVEHAVIMEVG-----GRSKGCGIVTYATESEAQNAI 126
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L+ +++ GR++ VR R NA A P K ++YVGNL W VK +
Sbjct: 127 ETLNDTELDGRKIFVR-----EDREENASA--QPRAKGC------RVYVGNLPWTVKWQA 173
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVRE 277
L++H + GTV+ A VL + G ++ G + FS+ D ++A LN T+ GR I VRE
Sbjct: 174 LKDHMKQAGTVIHADVL-EEAGGWSKGCGLVEFSTPDEAQNAIDMLNDTELEGRNIFVRE 232
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 91/204 (44%), Gaps = 25/204 (12%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ C +YV NLP + L + K GTV+ +V G S+GCG + + + A+
Sbjct: 154 RAKGCRVYVGNLPWTVKWQALKDHMKQAGTVIHADVLEEA-GGWSKGCGLVEFSTPDEAQ 212
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI---------FVYESPH--- 203
NAI L+ +++ GR + VR + + + + A F P
Sbjct: 213 NAIDMLNDTELEGRNIFVREDREPDGGSITSIARRGGRGGRSSGGRGNSRFAGRGPREGN 272
Query: 204 ----------KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
++YVGNL W +L N F G V A V+ G+ +R FG + F S
Sbjct: 273 SGHSHSSDVKQVYVGNLPWDTTSRNLENLFQSAGDVERAEVVEFPDGR-SRGFGIVKFKS 331
Query: 254 DAERDAAL-SLNGTDFRGRTIIVR 276
+E A+ LNGT+ GR + VR
Sbjct: 332 SSEAQCAIDELNGTEHNGRRLEVR 355
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 52/82 (63%), Gaps = 5/82 (6%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALS 262
++YVGNLSW VK +DL++H G V A ++ G ++ G +++++++E ++A +
Sbjct: 71 RVYVGNLSWKVKWQDLKDHMRSAGDVEHAVIM--EVGGRSKGCGIVTYATESEAQNAIET 128
Query: 263 LNGTDFRGRTIIVREGVDRTES 284
LN T+ GR I VRE DR E+
Sbjct: 129 LNDTELDGRKIFVRE--DREEN 148
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL + D L E F FG +LS +V+ + E G+SRG G++ + + A++AI A+
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +E+ V + R E + K F +YV N+ E+
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEV----KAKFT-----NVYVKNIDQETSQEEFEE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
FG++G + SA + D +G+ R FGF++F A A+ LN +F+G+ + V
Sbjct: 238 LFGKYGKITSAVLEKDSEGK-LRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYV 291
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE +A+ +YV N+ + E E+F +G + S + ++ E G RG G
Sbjct: 206 DRQSKLEE--VKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE-GKLRGFG 262
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ + G+++ V + R + + + K+ Y+
Sbjct: 263 FVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L+ F FGT+ SA+V+ D G +R FGF+ FS+ E A++
Sbjct: 323 N-LFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETG-NSRGFGFVCFSTPEEATKAIT 380
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 17/186 (9%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E P+ LYV L + + L ++F P G+V S+ V R+ T S G Y+
Sbjct: 29 ETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHD 88
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ AI L+ + + G+ R+ +S S + I Y+ NL
Sbjct: 89 HEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI---------------YIKNL 133
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFR 269
A+ + L F FG ++S +V D G +R FGF+ F ++++ RDA +++G
Sbjct: 134 HPAIDNKSLHETFSTFGNILSCKVATDENG-VSRGFGFVHFENESDARDAIEAVDGMLMN 192
Query: 270 GRTIIV 275
+ + V
Sbjct: 193 DQEVYV 198
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F PFGT+ S +V R+ ETG SRG G++ +
Sbjct: 314 EKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 97/183 (53%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ + +G SRG G++ + +A+NAI L
Sbjct: 127 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATD-SSGQSRGYGFVQFDNEEAAQNAIDKL 185
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + + R S K F + +YV NLS + EDL+N
Sbjct: 186 NGMLLNDKQVYVGHFLRKHERD-------SASNKKF-----NNVYVKNLSESTTEEDLKN 233
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
FG +G + SA ++ D G+ ++ FGF++F ++DA A SLNG + V +
Sbjct: 234 IFGEYGEITSAVIMRDADGK-SKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQK 292
Query: 281 RTE 283
++E
Sbjct: 293 KSE 295
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F +G + S + R+ + G S+ G++ + ++A A+ +L
Sbjct: 217 VYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDAD-GKSKCFGFVNFENTDAAAKAVESL 275
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVGNLSWAVKPEDL 219
+G + +E V + + R ++ K V Y+ + LY+ NL ++ E+L
Sbjct: 276 NGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVN-LYIKNLDDSISDENL 334
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ F FG + S +V+ D G +R GF++FS+ E AL+ +NG
Sbjct: 335 KELFSDFGMITSCKVMRDPSG-ISRGSGFVAFSTPEEASRALAEMNG 380
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S L E+F FG + S +V R+P +GISRG G++
Sbjct: 305 EQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDP-SGISRGSGFV 363
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G V + + V + R +A S
Sbjct: 364 AFSTPEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 408
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P LYVG+L V L + F + G VVS RV D + + +G+++++S + AL
Sbjct: 36 PTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARAL 95
Query: 262 S-LNGTDFRGRTI 273
LN T F + I
Sbjct: 96 DILNFTPFNNKPI 108
>gi|224009309|ref|XP_002293613.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971013|gb|EED89349.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 189
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 89/190 (46%), Gaps = 22/190 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L + K G VL ++ + + G S+GCG + S A A+ L
Sbjct: 2 VYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHD-GRSKGCGIVEYSSPEEAARAVEEL 60
Query: 162 DGSDVGGREMRVRFSIDM--------------NSRTRNAEALISPPKKIFVYESPHKLYV 207
+ S++ GR++ VR + N R+ N + P E +L+V
Sbjct: 61 NNSELSGRQIFVREDREQTTGSNNRHGGGGFNNQRSHNTSYMQGSPA-----EEGCQLFV 115
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNLSW +L++HF + G V A V G+ R FG + F S + AA+ LNG
Sbjct: 116 GNLSWETGWRELKDHFRQCGEVDRAEVAEGNDGR-KRGFGLVRFHSAKDAQAAIRKLNGV 174
Query: 267 DFRGRTIIVR 276
DF GR + VR
Sbjct: 175 DFMGRPLDVR 184
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
++YVGNLSW+ DL++H G V+ A ++ G+ ++ G + +SS E A+
Sbjct: 1 RVYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHDGR-SKGCGIVEYSSPEEAARAVEE 59
Query: 263 LNGTDFRGRTIIVREGVDRT 282
LN ++ GR I VRE ++T
Sbjct: 60 LNNSELSGRQIFVREDREQT 79
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 100/183 (54%), Gaps = 14/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S DI L E F FGT++S +++ + +G S+G G++ S +A+ AI L
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATD-ASGQSKGYGFVQYDSEEAAQTAIDKL 188
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + + + R++E K F + +YV NLS + +DLR
Sbjct: 189 NGMLMNDKQVYV--GVFLRKQDRDSEM----SKTKF-----NNIYVKNLSDSTSEDDLRK 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
FG +GT+ S V+ D G+ ++ FGF++F + + A+ +LNG F + V +
Sbjct: 238 TFGEYGTITSVVVMRDADGK-SKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQK 296
Query: 281 RTE 283
++E
Sbjct: 297 KSE 299
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L +S S+L ++F G V+SV V R+ TG S G GY+ + A AI L
Sbjct: 42 LYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVL 101
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + + + +RV S D R A +++ NL ++ + L
Sbjct: 102 NFTPLNNKTIRVSVSRRDPTDRKSGA----------------GNIFIKNLDKSIDIKALH 145
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FGT++S ++ D GQ ++ +GF+ + S +A + A LNG + + V
Sbjct: 146 ETFSSFGTIISCKIATDASGQ-SKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYV 200
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 121/263 (46%), Gaps = 35/263 (13%)
Query: 29 FTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING-----KDNVGG-- 81
F+S T+I+ + +S S+ G+ V +E A D++NG K G
Sbjct: 148 FSSFGTIISCKIATDASGQSK----GYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVF 203
Query: 82 -NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
+ D DS + S+ + +YV NL S +L + F +GT+ SV V R+ + G S
Sbjct: 204 LRKQDRDSEM----SKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDAD-GKS 258
Query: 141 RGCGYLTMGSINSAKNAIIALDGSD-------VGGREMRVRFSIDMNSRTRNAEALISPP 193
+ G++ + A A+ AL+G VG + + +++ SR +
Sbjct: 259 KCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQ-----TVK 313
Query: 194 KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
+++ Y+ + LYV NL + E L+ F +GT+ S +V+ D G +R GF++FS+
Sbjct: 314 EQVDKYQGVN-LYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSG-ISRGSGFVAFST 371
Query: 254 DAERDAALSLNGTDFRGRTIIVR 276
E AL + G+ I+ +
Sbjct: 372 PEEASRALG----EMNGKMIVSK 390
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +V+E + + LYV NL + D +L E+F +GT+ S +V R+P +GISRG G++
Sbjct: 309 EQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDP-SGISRGSGFV 367
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G + + + V + R +A S
Sbjct: 368 AFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFS 412
>gi|414883566|tpg|DAA59580.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 277
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 80/149 (53%), Gaps = 27/149 (18%)
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF----------SIDMNSRTRNA 186
T SRG ++TM + A AI DG+ +GGR RV + ++ M+ R R+
Sbjct: 85 TNRSRGFAFVTMATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRD- 143
Query: 187 EALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHF-GRFGTVVSARVLHDRKGQTTRV 245
+ +K+Y GNL W V+ + LRN F GR G ++ ARV+ +R+ +R
Sbjct: 144 -------------DGTYKIYAGNLGWGVRADTLRNVFEGRAG-LLDARVIFERETGRSRG 189
Query: 246 FGFISFSSDAERDAAL-SLNGTDFRGRTI 273
FGF+SFS+ + AAL SL+G + GR++
Sbjct: 190 FGFVSFSTAEDAQAALESLDGVELEGRSL 218
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L +F+ +L V ETG SRG G+++ + A+ A+ +
Sbjct: 148 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 207
Query: 161 LDGSDVGGREMRVRFS 176
LDG ++ GR +R+ +
Sbjct: 208 LDGVELEGRSLRLSLA 223
>gi|242042437|ref|XP_002468613.1| hypothetical protein SORBIDRAFT_01g048990 [Sorghum bicolor]
gi|241922467|gb|EER95611.1| hypothetical protein SORBIDRAFT_01g048990 [Sorghum bicolor]
Length = 253
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 89/170 (52%), Gaps = 6/170 (3%)
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
+P + +++ ++F+ +G + SV++SR P++G RG ++ + A ++ LDG +
Sbjct: 81 MPYTTTEADIRKLFEFYGPLQSVQLSRFPDSGNFRGLAFICFETNEDAIKSL-ELDGFKI 139
Query: 167 GGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGR 225
G R MRV R + S + + PKK E YVGNLSW V +DLR+ F R
Sbjct: 140 GSRYMRVERCRVTATSNKKRKAEFQTDPKK---SEGCLSAYVGNLSWNVTEKDLRDFF-R 195
Query: 226 FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
+ S R D++ +R F + F D + A+++N ++ +GR + V
Sbjct: 196 SSKIASVRFAIDKRTGGSRGFCHVDFQDDESLEKAVAMNQSELQGRPVKV 245
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 8/198 (4%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+NGK G + +E +A+ +YV N FD +L E F+P+G + S +V
Sbjct: 155 LNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFDDEKLKEFFEPYGKITSYKV 214
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREMRVRFSIDMNSRTRNAEALI 190
+ E G S+G G++ + +A+ A+ AL+G D+G G+ + V + R + +
Sbjct: 215 M-SKEDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Query: 191 SPPKKIFVYESPH--KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
KK +ES LYV NL ++ E LR F +GT+ SA+V+ D +G+ ++ FGF
Sbjct: 274 EELKKK-RHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDDEGR-SKGFGF 331
Query: 249 ISFSSDAERDAALS-LNG 265
+ F S E A++ LNG
Sbjct: 332 VCFISPNEATCAVTELNG 349
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 84/183 (45%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDDE-GRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRV 173
+G VG + + V
Sbjct: 348 NGRVVGSKPLYV 359
>gi|238879474|gb|EEQ43112.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 399
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 16/185 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S P L+V L + D + L F+ G V+ V TG SRG GY+ S ++A
Sbjct: 163 STEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 155 KNAIIALDGSDVGGREMRVRFSIDM-------NSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A+ + G ++ GR + + S N R + SPP L++
Sbjct: 223 EKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT--------LFI 274
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNLS+ ++L N FG +G V+S RV Q + FG++ FSS E AAL ++NG
Sbjct: 275 GNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGE 334
Query: 267 DFRGR 271
GR
Sbjct: 335 YIEGR 339
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E P L+VG LSW + L+ F G V+ ARV+ +R +R +G++ F S + +
Sbjct: 165 EEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEK 224
Query: 260 AL-SLNGTDFRGRTI 273
AL + G + GR I
Sbjct: 225 ALEEMQGKEIDGRPI 239
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + L +F +G V+S V +P+T +G GY+ S++ AK A+ A+
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 332 NGEYIEGRPCRLDFS 346
>gi|68473894|ref|XP_719050.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|68474099|ref|XP_718946.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440741|gb|EAL00044.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440849|gb|EAL00151.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
Length = 400
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 86/185 (46%), Gaps = 16/185 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S P L+V L + D + L F+ G V+ V TG SRG GY+ S ++A
Sbjct: 163 STEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 155 KNAIIALDGSDVGGREMRVRFSIDM-------NSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A+ + G ++ GR + + S N R + SPP L++
Sbjct: 223 EKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT--------LFI 274
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNLS+ ++L N FG +G V+S RV Q + FG++ FSS E AAL ++NG
Sbjct: 275 GNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGE 334
Query: 267 DFRGR 271
GR
Sbjct: 335 YIEGR 339
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E P L+VG LSW + L+ F G V+ ARV+ +R +R +G++ F S + +
Sbjct: 165 EEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEK 224
Query: 260 AL-SLNGTDFRGRTI 273
AL + G + GR I
Sbjct: 225 ALEEMQGKEIDGRPI 239
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + L +F +G V+S V +P+T +G GY+ S++ AK A+ A+
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 332 NGEYIEGRPCRLDFS 346
>gi|222837999|gb|EEE76364.1| predicted protein [Populus trichocarpa]
Length = 121
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 11/130 (8%)
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F FG V S +V +TG S+G G++ MGS A+ AI L G + GGR++ V + M
Sbjct: 1 FSEFGAVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQGLHGQNRGGRDLVVNEARPM 60
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
R E L+ +KLYVGNL + V+ DL F +FG V SARV+ +R
Sbjct: 61 EPRAPLEEFLMG-----------NKLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERD 109
Query: 240 GQTTRVFGFI 249
++ FGF+
Sbjct: 110 TGRSKGFGFV 119
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 223 FGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVRE 277
F FG V SA+V+ +R ++ FGF+ SDAE AA+ L+G + GR ++V E
Sbjct: 1 FSEFGAVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQGLHGQNRGGRDLVVNE 56
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCE-------LYVCN 106
GF V D EA ++G++ G + V +++ EPR+ P E LYV N
Sbjct: 23 GFGFVEMGSDAEAQAAIQGLHGQNRGGRDLVVNEARPMEPRA---PLEEFLMGNKLYVGN 79
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
LP ++L + F FG V S V +TG S+G G++ M
Sbjct: 80 LPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEM 121
>gi|294951822|ref|XP_002787139.1| nucleolar protein, putative [Perkinsus marinus ATCC 50983]
gi|239901796|gb|EER18935.1| nucleolar protein, putative [Perkinsus marinus ATCC 50983]
Length = 756
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 10/214 (4%)
Query: 65 EAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFG 124
EA EDE N+ SVE +S +++ NLP S L ++F G
Sbjct: 483 EATTEEDEAPAPKRAKMNDGSAQESVERSKS------VFIGNLPFSMTKEWLEQIFSWCG 536
Query: 125 TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTR 184
+ V + + E+G +G +L +SA+ A+ +G D GR++R+ +S N
Sbjct: 537 DIERVSIPTDWESGKIKGFAFLDFADEDSAEKAV-GKNGEDCEGRDLRINYSFPKNDNAH 595
Query: 185 NAEALISPPKKIFVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
+ K +E K ++VGNL W++ + L FG G++ + DR+
Sbjct: 596 GGKGKGGKGKGKGHHELGEKSASVFVGNLPWSMTQDWLYEVFGDCGSITRCFMPTDRETG 655
Query: 242 TTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
R F +I F ++ + A L+GTD GR I V
Sbjct: 656 NPRGFAYIDFDTEDSAENATKLSGTDLEGRQIRV 689
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL + D L EMF FGT+LS +V+ + G S+G G++ S +SAK+AI
Sbjct: 149 ANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATD-FNGKSKGYGFIQFESESSAKDAIN 207
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G G+++ V I R +A + +YV NL DL
Sbjct: 208 GLNGMLANGQKIFVGLFIRRQEREHTGDA-----------NNFTNVYVKNLPKHFSDNDL 256
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
N F FG + SA V+ D G +R FGF++F S+ R+A +LNG + V
Sbjct: 257 LNEFSSFGAITSAIVMRDANG-LSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARA 315
Query: 279 VDRTE 283
++E
Sbjct: 316 QKKSE 320
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP+ F ++LL F FG + S V R+ G+SR G++ A+NA+ L
Sbjct: 242 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDA-NGLSRCFGFVNFEKSECARNAVKNL 300
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +G + V + + R +A K + F LY+ NL + E LR
Sbjct: 301 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 360
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F FG V S +V+ D G+ ++ GF+SF++ + +A L +NG
Sbjct: 361 KLFECFGEVASCKVMLDSHGR-SKGCGFVSFATVEDANNAILKMNG 405
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LY+ NL + L ++F+ FG V S +V + G S+GCG+++ ++ A
Sbjct: 339 KLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSH-GRSKGCGFVSFATVEDAN 397
Query: 156 NAIIALDGSDVGGREMRV 173
NAI+ ++G VG + + V
Sbjct: 398 NAILKMNGKMVGKKPLYV 415
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL + D L EMF FGT+LS +V+ + G S+G G++ S +SAK+AI
Sbjct: 150 ANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATD-FNGKSKGYGFIQFESESSAKDAIN 208
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G G+++ V I R +A + +YV NL DL
Sbjct: 209 GLNGMLANGQKIFVGLFIRRQEREHTGDA-----------NNFTNVYVKNLPKHFSDNDL 257
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
N F FG + SA V+ D G +R FGF++F S+ R+A +LNG + V
Sbjct: 258 LNEFSSFGAITSAIVMRDANG-LSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARA 316
Query: 279 VDRTE 283
++E
Sbjct: 317 QKKSE 321
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 4/166 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP+ F ++LL F FG + S V R+ G+SR G++ A+NA+ L
Sbjct: 243 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDA-NGLSRCFGFVNFEKSECARNAVKNL 301
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +G + V + + R +A K + F LY+ NL + E LR
Sbjct: 302 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 361
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F FG V S +V+ D G+ ++ GF+SF++ + +A L +NG
Sbjct: 362 KLFECFGEVASCKVMLDSHGR-SKGCGFVSFATVEDANNAILKMNG 406
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LY+ NL + L ++F+ FG V S +V + G S+GCG+++ ++ A
Sbjct: 340 KLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSH-GRSKGCGFVSFATVEDAN 398
Query: 156 NAIIALDGSDVGGREMRV 173
NAI+ ++G VG + + V
Sbjct: 399 NAILKMNGKMVGKKPLYV 416
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL + D L E F FG +LS +V+ + + G+SRG G++ + + A++AI A+
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-DNGVSRGFGFVHFENESDARDAIEAV 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +E+ V + + R E + K F +YV N+ E+
Sbjct: 187 NGMLMNDQEVYVAWHVSKKDRQSKLEEV----KAKFT-----NIYVKNIDLETSQEEFEQ 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIV 275
F ++G + SA + D +G+ R FGFI+F S A R A LN +DFRG+T+ V
Sbjct: 238 LFSKYGKITSAVLEKDSEGK-LRGFGFINFEDHSTAAR-AVDELNESDFRGQTLYV 291
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 91/180 (50%), Gaps = 7/180 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE +A+ +YV N+ E ++F +G + S + ++ E G RG G
Sbjct: 206 DRQSKLEE--VKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSE-GKLRGFG 262
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ ++A A+ L+ SD G+ + V + + R + + + K+ Y+
Sbjct: 263 FINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL ++ E L++ F FGT+ S +V+ D G ++R FGF+ FS+ E A++
Sbjct: 323 N-LFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAG-SSRGFGFVCFSTPEEATKAIT 380
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E P+ LYV L S + L ++F P G+V S+ V R+ T S G Y+
Sbjct: 29 ETPKVETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHD 88
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ + AI L+ + + G+ R+ +S S + I Y+ NL
Sbjct: 89 HEAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI---------------YIKNL 133
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFR 269
A+ + L F FG ++S +V D G +R FGF+ F ++++ RDA ++NG
Sbjct: 134 HPAIDNKSLHETFSTFGNILSCKVATDDNG-VSRGFGFVHFENESDARDAIEAVNGMLMN 192
Query: 270 GRTIIV 275
+ + V
Sbjct: 193 DQEVYV 198
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L++ NL S D +L + F PFGT+ SV+V ++ E G SRG G++ +
Sbjct: 314 EKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKD-EAGSSRGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQLVAGKPLYV 394
>gi|330928516|ref|XP_003302299.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
gi|311322459|gb|EFQ89618.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
Length = 403
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 20/205 (9%)
Query: 83 EVDD----DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
EVD+ S VEEP + L+V N+ + D L F+ FG ++ V + ETG
Sbjct: 196 EVDEPIVKKSKVEEPAAEEGIKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRVITDRETG 255
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI-----DMN--SRTRNAEALIS 191
++G GY+ + A A + ++ GR++ V FS D N +R S
Sbjct: 256 RAKGFGYVEFSNAADAAKAQKEMHEYELDGRQLNVDFSTPRAKPDANGGARANKYGDKRS 315
Query: 192 PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
PP + L++GN+S+ E ++ F +G++ + DR + FG++ F
Sbjct: 316 PPS--------NTLFLGNVSFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDF 367
Query: 252 SSDAERDAAL-SLNGTDFRGRTIIV 275
SS E AAL +LNG D GR I +
Sbjct: 368 SSQQEATAALEALNGQDIGGRAIRI 392
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 7/102 (6%)
Query: 181 SRTRNAEALISPPKKIFVYESP------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
S+ R AE + P K E P L+VGN+SW + + LR F FG +V RV
Sbjct: 189 SKKRKAEEVDEPIVKKSKVEEPAAEEGIKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRV 248
Query: 235 LHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIV 275
+ DR+ + FG++ FS+ A+ A ++ + GR + V
Sbjct: 249 ITDRETGRAKGFGYVEFSNAADAAKAQKEMHEYELDGRQLNV 290
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ N+ SF+ S + E+F +G++ V + + +TG +G GY+ S A A+
Sbjct: 321 LFLGNV--SFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALE 378
Query: 160 ALDGSDVGGREMRVRFS 176
AL+G D+GGR +R+ ++
Sbjct: 379 ALNGQDIGGRAIRIDYA 395
>gi|357440095|ref|XP_003590325.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479373|gb|AES60576.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 156
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 21/142 (14%)
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRF--------SIDMNSRTRNAEALISPPKKIFVY 199
MG++ A+ AI DG+ VGGR ++V F + M S R
Sbjct: 1 MGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRG------------YV 48
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+SPHK+Y GNL W + + LR F + ++SA+V+++R +R +GF+SF + + +
Sbjct: 49 DSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEV 108
Query: 260 ALS-LNGTDFRGRTIIVREGVD 280
ALS +NG + +GR + ++ VD
Sbjct: 109 ALSAMNGVEVQGRPLRLKLAVD 130
>gi|115470657|ref|NP_001058927.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|34394882|dbj|BAC84331.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113610463|dbj|BAF20841.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|125557292|gb|EAZ02828.1| hypothetical protein OsI_24955 [Oryza sativa Indica Group]
gi|215695203|dbj|BAG90394.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740788|dbj|BAG96944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 348
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 6/186 (3%)
Query: 93 PRSR----ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PRSR P L+V NLP + E+ + F G V +V++ + T SRG ++TM
Sbjct: 107 PRSRPALGQEPGRLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTM 166
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ A AI +G+ +GGR RV + ++ A + ++ + K+Y G
Sbjct: 167 ATAEEAATAIQMFNGALLGGRTARVNYP-EVPRGGERAVGSAAATRENRRDDGTFKIYAG 225
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD 267
NL W V+ + LR F ++ ARV+ +R +R FGF+SF + + AAL +L+G +
Sbjct: 226 NLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVE 285
Query: 268 FRGRTI 273
GR +
Sbjct: 286 LEGRPL 291
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 98 RPCELYVCNLPRSFDISELL--EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R LY+ NL DISE L E F FG ++S+ V+++ G+S+G G++ + AK
Sbjct: 187 RYTNLYMKNL--DLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAK 243
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVGNLSWA 213
A+ ++G +G + + V + R + +K + Y+ + +YV N+
Sbjct: 244 RAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSN-IYVKNIDDN 302
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRT 272
V E LR+HF GT+ SA+++ D KG ++ FGF+ FS+ E + A+ S +G F G+
Sbjct: 303 VSDEGLRDHFSVCGTITSAKIMRDDKG-ISKGFGFVCFSTPEEANKAVNSFHGFMFHGKP 361
Query: 273 IIV 275
+ V
Sbjct: 362 LYV 364
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 21/217 (9%)
Query: 72 EINGKDNVGGNEVDDDSSVEEPRSRARPC--ELYVCNLPRSFDISELLEMFKPFGTVLSV 129
E+ + G + S +P +R + C ++V NL S D S L +MFK FG +LS
Sbjct: 69 EVKNHSTLNGKAIRVMWSRRDPDAR-KSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSS 127
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEA 188
+V + E G S+G G++ + SA AI L+G VG +++ V +F + ++
Sbjct: 128 KVVMS-EDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKF-------VKKSDR 179
Query: 189 LISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
+ S P + LY+ NL + LR F FG ++S V D G ++ FGF
Sbjct: 180 ISSGPDTRYT-----NLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNG-MSKGFGF 233
Query: 249 ISFSS--DAERDAALSLNGTDFRGRTIIVREGVDRTE 283
++F + DA+R A ++NG + + V + E
Sbjct: 234 VNFDNPEDAKR-AMETMNGLQLGSKILYVARAQKKAE 269
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL + D L EMF FGT+LS +V+ + G S+G G++ S +SAK+AI
Sbjct: 173 ANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATD-FNGKSKGYGFIQFESESSAKDAIN 231
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G G+++ V I R +A + +YV NL DL
Sbjct: 232 GLNGMLANGQKIFVGLFIRRQEREHTGDA-----------NNFTNVYVKNLPKHFSDNDL 280
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
N F FG + SA V+ D G +R FGF++F S+ R+A +LNG + V
Sbjct: 281 LNEFSSFGAITSAIVMRDANG-LSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARA 339
Query: 279 VDRTE 283
++E
Sbjct: 340 QKKSE 344
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 4/166 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP+ F ++LL F FG + S V R+ G+SR G++ A+NA+ L
Sbjct: 266 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDA-NGLSRCFGFVNFEKSECARNAVKNL 324
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +G + V + + R +A K + F LY+ NL + E LR
Sbjct: 325 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 384
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F FG V S +V+ D G++ GF+SF++ + +A L +NG
Sbjct: 385 KLFECFGEVASCKVMLDSHGRSKGC-GFVSFATVEDANNAILKMNG 429
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LY+ NL + L ++F+ FG V S +V + G S+GCG+++ ++ A
Sbjct: 363 KLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSH-GRSKGCGFVSFATVEDAN 421
Query: 156 NAIIALDGSDVGGREMRV 173
NAI+ ++G VG + + V
Sbjct: 422 NAILKMNGKMVGKKPLYV 439
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +S D L E F GT++S +V+ + G SRG G++ + +SAKNAI L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F +YV NLS A ++L+
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAAD------KMKFT-----NVYVKNLSEATTDDELKT 243
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIVREGV 279
FG++G++ SA V+ D G+ +R FGF++F + DA R A +LNG F + V +
Sbjct: 244 TFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAAR-AVEALNGKKFDDKEWYVGKAQ 301
Query: 280 DRTE 283
++E
Sbjct: 302 KKSE 305
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C LYV +L + S+L + F V+SV V R+ T S G GY+ + + A+ A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ S + G+ +R+ +S +S R+ L+V NL +V + L
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTL 150
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F GT+VS +V D GQ +R +GF+ F + D+ ++A LNG + I V
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQ-SRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + EL F +G++ S V R+ + G SR G++ + A A+ AL
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 162 DGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +E V + + R +R E S F LYV NL V E
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKF---DGLNLYVKNLDDTVTDE 342
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
LR F FGT+ S +V+ D G T++ GF++FS+ +E L+ +NG G+ + V
Sbjct: 343 KLRELFAEFGTITSCKVMRDPSG-TSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYV 400
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + +L E+F FGT+ S +V R+P +G S+G G++ + + A + +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+G VGG+ + V + R +A S + F+
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFI 425
>gi|325185008|emb|CCA19499.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 430
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+++V LPR D L F+ FG + +V + TG S+G G+LT + A +AI
Sbjct: 12 KVFVAGLPRDVDDDALYNKFRAFGDMFQAKVVFDAATGRSKGFGFLTYRQYDHAMDAIDK 71
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISP-------PKKIFVYESPHKLYVGNLSWA 213
+G + GR + VRF + +T + + +IS PK ++ LYVGNLS+
Sbjct: 72 TNGKNWNGRVLNVRF---LKPKTGSEKDMISTSAPEVPVPKISTSAKNCTTLYVGNLSYE 128
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
+ + +R F FG + + R+ + + R FG++ F AL+ NG GR +
Sbjct: 129 ITEDIIRRVFSPFGDIKAVRLAQHIQTKKFRGFGYVQFYDTESCTKALATNGKIVIGRPM 188
Query: 274 IV 275
V
Sbjct: 189 HV 190
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAE 256
++ +K++V L V + L N F FG + A+V+ D ++ FGF+++ D
Sbjct: 6 LWRDRNKVFVAGLPRDVDDDALYNKFRAFGDMFQAKVVFDAATGRSKGFGFLTYRQYDHA 65
Query: 257 RDAALSLNGTDFRGRTIIVR 276
DA NG ++ GR + VR
Sbjct: 66 MDAIDKTNGKNWNGRVLNVR 85
>gi|357114300|ref|XP_003558938.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 255
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
+P + +E+ E+F+ FG + S+++S P++G G ++T S A ++ LDG +
Sbjct: 83 MPYTTTEAEIRELFERFGPIRSLQLSHFPDSGNFSGLAFVTFESDEVAMKSL-ELDGHKL 141
Query: 167 GGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHK------LYVGNLSWAVKPEDL 219
G R MRV R I +S+ PKK P K YVGNLSW V +DL
Sbjct: 142 GYRFMRVERCRITASSKR---------PKKSEFQTDPEKPDGCLSAYVGNLSWNVTEKDL 192
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
R+ F + + S R D++ +R FG I F D + A+ +N ++ RGR + +
Sbjct: 193 RDFF-KSSRIASVRFAIDKRTGDSRGFGHIDFEDDESLEKAVGMNQSELRGRPVKI 247
>gi|452823093|gb|EME30106.1| RNA-binding protein [Galdieria sulphuraria]
Length = 477
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 25/170 (14%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
PC++++ LP + +L + +P+GTVL + RN T SRGCG+ + A NAI
Sbjct: 39 PCKIFIGQLPSNVVEEDLRRICEPYGTVLETTIVRNRMTNQSRGCGFCVFHNREEADNAI 98
Query: 159 IALDGSD---VGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AL G+ G + ++VR + +N++ S KLY+G+L V+
Sbjct: 99 QALHGTKPFPSGSKPLQVRLA------EKNSDF------------SETKLYIGHLEPIVE 140
Query: 216 PEDLRNHFGRFGTVVSARVLH----DRKGQTTRVFGFISFSSDAERDAAL 261
+ LRN F +FG +V ++ D + + +GF+ FS + D A+
Sbjct: 141 EQQLRNAFTKFGEIVDVNIVRPRNVDNQHNSPYNYGFVEFSGNEAADNAI 190
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 89 SVEEPRSRAR---PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
S E ++R R C L+V +P +D + L +F PFG +LS V + T S+G G+
Sbjct: 377 SFETQQNRVRGPSECNLFVYGIPPDWDDAMLANLFLPFGKLLSSNVFIDKRTQRSKGFGF 436
Query: 146 LTMGSINSAKNAIIALDGSDV-GGREMRVRFSIDMN 180
++ +SA AI L+G + GR ++V + N
Sbjct: 437 VSYAYPDSAHMAIAMLNGMTLPNGRTLKVSLKKEKN 472
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
+ N A+ P +SP K+++G L V EDLR +GTV+ ++ +R
Sbjct: 20 SSNYHAMTQSPSTRLFKDSPCKIFIGQLPSNVVEEDLRRICEPYGTVLETTIVRNRMTNQ 79
Query: 243 TRVFGFISFSSDAERDAAL-SLNGT 266
+R GF F + E D A+ +L+GT
Sbjct: 80 SRGCGFCVFHNREEADNAIQALHGT 104
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 109/210 (51%), Gaps = 20/210 (9%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ F E+ ++F+P+G + S+ + ++ E G S+G G
Sbjct: 218 DRESKFEE--MKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAE-GKSKGFG 274
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRV------RFSIDMNSRTRNAEALISPPKKIFV 198
++ S +A A+ L+ D+ G+++ V R I+ R A L +K+
Sbjct: 275 FVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEELKRQYEAARL----EKLSK 330
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
Y+ + L+V NL ++ L F FGT+ SARV+ D G+ ++ FGF+ FSS E
Sbjct: 331 YQGVN-LFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGK-SKGFGFVCFSSPEEAT 388
Query: 259 AALS-LNGTDFRGRTIIV----REGVDRTE 283
A++ +N F G+ + V R+ V R++
Sbjct: 389 KAITEMNQRMFHGKPLYVALAQRKDVRRSQ 418
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 21/205 (10%)
Query: 81 GNEVDDDS-SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GNE +D + S + P + A LYV L S + + L E+F P G V S+ V R+ T
Sbjct: 33 GNEGEDAADSSQLPDTSA---SLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKK 89
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
S G Y+ + + AI L+ S + GR R+ +S S RN E I
Sbjct: 90 SLGYAYVNFHKLEDGEKAIEELNYSLIDGRPCRIMWSQRDPSLRRNGEGNI--------- 140
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERD 258
++ NL A+ + L + F FG ++S +V D +G ++ FGF+ + +++A +
Sbjct: 141 ------FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQG-NSKCFGFVHYETAEAAKA 193
Query: 259 AALSLNGTDFRGRTIIVREGVDRTE 283
A ++NG R + V + V + +
Sbjct: 194 AIENVNGMLLNDREVYVGKHVSKKD 218
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 35/191 (18%)
Query: 12 SSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVED 71
+SL + K FGF +NF+ SH A ++V + D++
Sbjct: 258 TSLHLEKDAEGKSKGFGF------VNFE----------SHEAAVKAVEELNDKD------ 295
Query: 72 EINGKDNVGGNEVDDDSSVEEPR-----------SRARPCELYVCNLPRSFDISELLEMF 120
ING+ G +EE + S+ + L+V NL S D +L E F
Sbjct: 296 -INGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEF 354
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
KPFGT+ S V + E G S+G G++ S A AI ++ G+ + V + +
Sbjct: 355 KPFGTITSARVMVD-EHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKD 413
Query: 181 SRTRNAEALIS 191
R E I
Sbjct: 414 VRRSQLEQQIQ 424
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 98/184 (53%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +S D L E F GT++S +V+ + G SRG G++ + +SAKNAI L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F +YV NLS A ++L+
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAAD------KMKFT-----NVYVKNLSEATTDDELKT 243
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIVREGV 279
FG++G++ SA V+ D G+ +R FGF++F + DA R A +LNG F + V +
Sbjct: 244 TFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAAR-AVEALNGKKFDDKEWYVGKAQ 301
Query: 280 DRTE 283
++E
Sbjct: 302 KKSE 305
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 17/177 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C LYV +L + S+L + F V+SV V R+ T S G GY+ + + A+ A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ S + G+ +R+ +S +S R+ L+V NL +V + L
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTL 150
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F GT+VS +V D GQ +R +GF+ F + D+ ++A LNG + I V
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQ-SRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + EL F +G++ S V R+ + G SR G++ + A A+ AL
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 162 DGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +E V + + R +R E S F LYV NL V E
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKF---DGLNLYVKNLDDTVTDE 342
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
LR F FGT+ S +V+ D G T++ GF++FS+ +E L+ +NG G+ + V
Sbjct: 343 KLRELFAEFGTITSCKVMRDPSG-TSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYV 400
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + +L E+F FGT+ S +V R+P +G S+G G++ + + A + +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+G VGG+ + V + R +A S + F+
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFI 425
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 15/180 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D ++ E+F PFG ++S +V + E G SRG G+++ +A+ A+ L
Sbjct: 193 VYIKNFGDELDDDKIRELFDPFGKIISAKVMTD-EIGKSRGFGFVSYEEPEAAEKAVDNL 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV-----YESPHKLYVGNLSWAVKP 216
+G ++GG +V ++ + L +KI + Y+ + LYV NL V
Sbjct: 252 NGMELGGG--KVLYAGRAQKKAERQAELKDKFEKIKMERINRYQGVN-LYVKNLDDVVDD 308
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
E LR F +FGT+ SARV+ + G ++ FGF+ FSS E A+ T+ GR I+ +
Sbjct: 309 ERLRKEFSQFGTITSARVMSE--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIIVSK 362
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +++ + E G S+G G++ + +A+ AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKIASD-ENG-SKGYGFVHFETEEAARQAIEKV 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R AL+ K F + +Y+ N + + +R
Sbjct: 159 NGMLLNGKKVYVGKFIPRKERI----ALLGDKMKRF-----NNVYIKNFGDELDDDKIRE 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTII 274
F FG ++SA+V+ D G+ +R FGF+S+ +A A +LNG + G ++
Sbjct: 210 LFDPFGKIISAKVMTDEIGK-SRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVL 262
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR +R+ +S S ++ +++ NL ++ + L
Sbjct: 71 TMNFDTIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
+ F FG ++S ++ D G ++ +GF+ F + +A R A +NG G+ + V +
Sbjct: 116 YDTFSAFGNILSCKIASDENG--SKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKF 173
Query: 279 VDRTE 283
+ R E
Sbjct: 174 IPRKE 178
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 104/205 (50%), Gaps = 11/205 (5%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+NGK G + +E +A+ +YV N FD +L + F+P+G + S +V
Sbjct: 155 LNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEEFDDEKLKDFFEPYGKITSYKV 214
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREMRVRFSIDMNSRTRNAEALI 190
+ E G S+G G++ + +A+ A+ AL+G D+G G+ + V + R + +
Sbjct: 215 M-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Query: 191 SPPKKIFVYESPH--KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
KK +ES LYV NL ++ E LR F +GT+ SA+V+ D +G+ ++ FGF
Sbjct: 274 EELKKK-RHESVFGVNLYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEEGR-SKGFGF 331
Query: 249 ISFSSDAERDAALSLNGTDFRGRTI 273
+ F S E A+ T+ GR +
Sbjct: 332 VCFISPNEATCAV----TELNGRVV 352
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL + + + +
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRQIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVALDEKG-NSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTD-EEGRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 15/180 (8%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D L F+ G V+ V TG SRG GY+ + +SA+ A+
Sbjct: 174 PATLFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEKAL 233
Query: 159 IALDGSDVGGREMRVRFSI------DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ + G ++ GR + + S N R + S P L++GNLS+
Sbjct: 234 VEMQGKEIDGRPINLDMSTGKPHASKSNDRAKQFGDTPSAPSDT--------LFIGNLSF 285
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
+ ++L FG+ GTV+S R+ Q + FG++ FSS E AAL +LNG GR
Sbjct: 286 NAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYIEGR 345
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + L E+F GTV+S + +P+T +G GY+ S++ AK A+ AL
Sbjct: 278 LFIGNLSFNAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 337
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 338 NGEYIEGRACRLDFS 352
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERD 258
+ P L+VG LSW + E L+ F G V+ ARV+ +R +R +G++ F + D+
Sbjct: 172 DEPATLFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEK 231
Query: 259 AALSLNGTDFRGRTI 273
A + + G + GR I
Sbjct: 232 ALVEMQGKEIDGRPI 246
>gi|326512018|dbj|BAJ95990.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 830
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 11/185 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L F+ G VL +V + E G SRG GY+TM ++ A+ A+
Sbjct: 571 VYVRNLPYHLDNEGLKLNFQHAGVVLFSKVIYDREIGRSRGFGYVTMNTVQEAEKAVRIY 630
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GS+V GR + V + A S SP +++V NL V L
Sbjct: 631 HGSEVHGRRLTVSIAAPRGGTWVGATRSQS--------GSPLRIFVCNLPSQVDNSRLEE 682
Query: 222 HFGRFGTVVSARVLHDRK--GQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
F + G VV ARV+++R+ +R FGF++ ++D E A+ +LN T++VR
Sbjct: 683 LFNKHGQVVDARVIYERREGASCSRGFGFVTMATDEESYKAIRALNKQVLEEHTLVVRVA 742
Query: 279 VDRTE 283
+R +
Sbjct: 743 RERPD 747
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEV--SRNPETGISRGCGYLTMGSINSAKN 156
P ++VCNLP D S L E+F G V+ V R SRG G++TM + +
Sbjct: 663 PLRIFVCNLPSQVDNSRLEELFNKHGQVVDARVIYERREGASCSRGFGFVTMATDEESYK 722
Query: 157 AIIALD 162
AI AL+
Sbjct: 723 AIRALN 728
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 89/184 (48%), Gaps = 7/184 (3%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E P + P L+V L + D L F+ G V+S V TG SRG GY+ S
Sbjct: 172 ETPEASEEPATLFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYVDFSS 231
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF-VYESPHK-LYVG 208
+A+ A+ L G ++ GR + ++DM++ A KK V +P L++G
Sbjct: 232 KAAAEKALNELQGKEIDGRPV----NLDMSTGKPKTPASNDRAKKFGDVPSAPSDTLFIG 287
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD 267
NLS+ + L FG +GTVVS R+ Q + FG++ FSS E AL SLNG
Sbjct: 288 NLSFNTERNKLFEIFGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNGEY 347
Query: 268 FRGR 271
GR
Sbjct: 348 LDGR 351
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E P L+VG LSW V E L+ F G V+SARV+ +R +R +G++ FSS A +
Sbjct: 178 EEPATLFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYVDFSSKAAAEK 237
Query: 260 ALS-LNGTDFRGRTI 273
AL+ L G + GR +
Sbjct: 238 ALNELQGKEIDGRPV 252
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 17/128 (13%)
Query: 71 DEINGKDNVGGNEVDDDSSVEEPRS-----RAR--------PCE-LYVCNLPRSFDISEL 116
+E+ GK+ + G V+ D S +P++ RA+ P + L++ NL + + ++L
Sbjct: 240 NELQGKE-IDGRPVNLDMSTGKPKTPASNDRAKKFGDVPSAPSDTLFIGNLSFNTERNKL 298
Query: 117 LEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
E+F +GTV+S + +P+T +G GY+ S+ A+NA+ +L+G + GR R+ FS
Sbjct: 299 FEIFGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNGEYLDGRPCRLDFS 358
Query: 177 I--DMNSR 182
D N+R
Sbjct: 359 TPRDNNAR 366
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHV 208
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ V E+ R
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNINNEVTDEEFRE 259
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG V S+ + D++G+ TR FGF++F++ +A A LNG DFRG+ + V
Sbjct: 260 LFAKFGEVTSSSLARDQEGK-TRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQK 318
Query: 281 RTE 283
+ E
Sbjct: 319 KHE 321
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ E E+F
Sbjct: 212 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNVYVKNINNEVTDEEFRELF 261
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
FG V S ++R+ E G +RG G++ + +A A+ L+G D G+++ V + +
Sbjct: 262 AKFGEVTSSSLARDQE-GKTRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKH 320
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NL V + LR F +G + SA+V+ D
Sbjct: 321 EREEELRKSYEAARLEKANKYQGVN-LYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRD 378
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 19/178 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV L S + L E+F G+V S+ V R+ T S G Y+ + + A+
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 160 ALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L+ + + GR R+ +S D R A +++ NL A+ +
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGA----------------GNIFIKNLDAAIDNKA 163
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
L + F FG ++S +V D G ++ +GF+ + +D A A +NG + + V
Sbjct: 164 LHDTFAAFGNILSCKVAQDEHG-NSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 220
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 18/186 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L E F FG +LS +++ N ETG S+G G++ + +A+ AI A+
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKIA-NDETGKSKGFGFVHFENEEAAREAIDAI 191
Query: 162 DGSDVGGREMRVRFSI---DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G + G+E+ V + D S+ A A + +YV NL ED
Sbjct: 192 NGMLLNGQEVYVAPHVSKKDRQSKLDEARANFT------------NVYVKNLDLEATEED 239
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277
N F +GT+ S + D +G+ +R FGF+ F + + A+ +LN T+++G+T+ V
Sbjct: 240 FENLFKPYGTITSVALEKDAEGK-SRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVGR 298
Query: 278 GVDRTE 283
+ E
Sbjct: 299 AQKKYE 304
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEV---------DDDSSVEEPRSRARPCELYV 104
GF V +E A D ING + G EV D S ++E +RA +YV
Sbjct: 172 GFGFVHFENEEAAREAIDAINGM-LLNGQEVYVAPHVSKKDRQSKLDE--ARANFTNVYV 228
Query: 105 CNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164
NL + +FKP+GT+ SV + ++ E G SRG G++ + A A+ AL+ +
Sbjct: 229 KNLDLEATEEDFENLFKPYGTITSVALEKDAE-GKSRGFGFVDFENHEDAVKAVEALNDT 287
Query: 165 DVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNH 222
+ G+ + V + R + + K K+ Y+ + L++ NL ++ E L+
Sbjct: 288 EYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGIN-LFIKNLDDSIDDEKLKEE 346
Query: 223 FGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
F FGT+ SARV+ G+ ++ FGF+ FS+ E A++
Sbjct: 347 FAPFGTITSARVMRTENGK-SKGFGFVCFSTPEEATRAIT 385
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 90 VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
E P LYV L S + L ++F P G+V S+ V R+ T S G Y+
Sbjct: 33 AESPNVENVTASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFN 92
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ K AI L+ + + GR R+ +S D + R + + +++
Sbjct: 93 DHEAGKTAIEKLNYTAIKGRPCRIMWSQRDPSMRKKGS----------------GNIFIK 136
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTD 267
NL + + L F FG ++S ++ +D G+ ++ FGF+ F + +A R+A ++NG
Sbjct: 137 NLHPDIDNKTLYETFSVFGNILSCKIANDETGK-SKGFGFVHFENEEAAREAIDAINGML 195
Query: 268 FRGRTIIVREGVDRTE 283
G+ + V V + +
Sbjct: 196 LNGQEVYVAPHVSKKD 211
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L++ NL S D +L E F PFGT+ S V R E G S+G G++ +
Sbjct: 319 EKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRT-ENGKSKGFGFVCFSTP 377
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 378 EEATRAITEKNQQIVAGKPLYV 399
>gi|449540824|gb|EMD31812.1| hypothetical protein CERSUDRAFT_88684 [Ceriporiopsis subvermispora
B]
Length = 292
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 87/181 (48%), Gaps = 16/181 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L + F G V+S V + TG SRG GY+T ++ A +A IA
Sbjct: 46 IFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTFATVE-AVDAAIAQ 104
Query: 162 DGSDVGGREMRVRFSIDMNS---RTRNAEAL---ISPPKKIFVYESPHKLYVGNLSWAVK 215
+G ++ GR + + SI+ + R + AEA S P + L+VGNLSW
Sbjct: 105 NGKEIDGRAVNIDKSIEKDKGAVRQKRAEAYGDKASEPSSV--------LFVGNLSWDAT 156
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTII 274
+ L F +G + S RV DR+ + F ++ FS +A + A G + GR I
Sbjct: 157 EDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFSDIEASKKAFEGAAGAEVAGRNIR 216
Query: 275 V 275
V
Sbjct: 217 V 217
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
++VG LSW V + L F G VVSARV DR +R FG+++F++ DAA++ N
Sbjct: 46 IFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTFATVEAVDAAIAQN 105
Query: 265 GTDFRGRTIIVREGVDR 281
G + GR + + + +++
Sbjct: 106 GKEIDGRAVNIDKSIEK 122
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 19/128 (14%)
Query: 65 EAVVVEDEINGKDNVGGNEVDDDSSVEEPRS--RARPCE------------LYVCNLPRS 110
EAV NGK+ + G V+ D S+E+ + R + E L+V NL S
Sbjct: 96 EAVDAAIAQNGKE-IDGRAVNIDKSIEKDKGAVRQKRAEAYGDKASEPSSVLFVGNL--S 152
Query: 111 FDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168
+D +E L E F +G + SV V + ETG +G Y+ I ++K A G++V G
Sbjct: 153 WDATEDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFSDIEASKKAFEGAAGAEVAG 212
Query: 169 REMRVRFS 176
R +RV FS
Sbjct: 213 RNIRVDFS 220
>gi|350417503|ref|XP_003491454.1| PREDICTED: hypothetical protein LOC100748299 [Bombus impatiens]
Length = 622
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 97/214 (45%), Gaps = 36/214 (16%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-------------- 130
D DSS+E+ + R ++V NLP+ +L ++FK FG + ++
Sbjct: 329 DKDSSLEDFKENERT--IFVGNLPKDVTKKQLQKLFKQFGKIDAIRLRGKISKSLNIPKR 386
Query: 131 ---VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
++ + Y+ S S K A+ +++G G +RV S+ N R
Sbjct: 387 VAAITNELHPKMKSVYAYIRFESEESTKKAL-SVNGRKFEGNYIRVDMSMKSNDR----- 440
Query: 188 ALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
YE+ +++GNL + V + +RNHF R G + S R++ D + + FG
Sbjct: 441 -----------YETKKSVFIGNLHFNVDDDSVRNHFKRCGEIQSVRIIRDNQTGVGKGFG 489
Query: 248 FISFSSDAERDAALSLNGTDFRGRTIIVREGVDR 281
+++F S+ AL L+GT R I V+ +D+
Sbjct: 490 YVNFKSEDAVALALELDGTTILNREIRVKPNIDQ 523
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 6/146 (4%)
Query: 42 KLSSCWSRSHPAGFRSVLAVV---DEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRAR 98
++++ + HP +SV A + EE+ +NG+ GN + D S++
Sbjct: 386 RVAAITNELHPK-MKSVYAYIRFESEESTKKALSVNGR-KFEGNYIRVDMSMKSNDRYET 443
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+++ NL + D + FK G + SV + R+ +TG+ +G GY+ S ++ A+
Sbjct: 444 KKSVFIGNLHFNVDDDSVRNHFKRCGEIQSVRIIRDNQTGVGKGFGYVNFKSEDAVALAL 503
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTR 184
LDG+ + RE+RV+ +ID + RT+
Sbjct: 504 -ELDGTTILNREIRVKPNIDQDKRTK 528
>gi|448520030|ref|XP_003868205.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis Co 90-125]
gi|380352544|emb|CCG22770.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis]
Length = 498
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 82/181 (45%), Gaps = 16/181 (8%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++ L + D L F+ V+S V TG SRG GY+ S ++A+NAI
Sbjct: 254 PATIFAGRLSWNIDDDWLKREFEHLEGVISARVIMERATGKSRGYGYVDFSSKSAAENAI 313
Query: 159 IALDGSDVGGREMRVRFSIDM-------NSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ G ++ GR + + S N R R SPP L++GNLS
Sbjct: 314 AEMQGKEIDGRPINLDLSTGKPHATKSNNDRARQFGDQQSPPSDT--------LFIGNLS 365
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270
+ + L FG +G V+S R+ Q + FG++ FSS E AAL +LNG G
Sbjct: 366 FNANRDKLFEVFGEYGNVISCRLPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYLEG 425
Query: 271 R 271
R
Sbjct: 426 R 426
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + +L E+F +G V+S + +P+T +G GY+ S++ AK A+ AL
Sbjct: 359 LFIGNLSFNANRDKLFEVFGEYGNVISCRLPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 418
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 419 NGEYLEGRPCRLDFS 433
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERD 258
E P ++ G LSW + + L+ F V+SARV+ +R +R +G++ FSS A +
Sbjct: 252 EEPATIFAGRLSWNIDDDWLKREFEHLEGVISARVIMERATGKSRGYGYVDFSSKSAAEN 311
Query: 259 AALSLNGTDFRGRTI 273
A + G + GR I
Sbjct: 312 AIAEMQGKEIDGRPI 326
>gi|255730137|ref|XP_002549993.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131950|gb|EER31508.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 442
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 7/176 (3%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D L F+ G V+ V TG SRG GY+ + A+ A+
Sbjct: 214 PATLFVGRLSWNIDDDWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFEGKSFAEKAL 273
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP--HKLYVGNLSWAVKP 216
+ G ++ GR + ++DM++ +A K+ +SP L++GNLS+
Sbjct: 274 AEMQGKEIDGRPI----NLDMSTGKPHASKSNDRAKQFGDSQSPPSDTLFIGNLSFNANR 329
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
+ L N FG +G V+S R+ Q + FG++ FSS E AAL +LNG GR
Sbjct: 330 DGLFNTFGEYGNVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGQYIEGR 385
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + L F +G V+S + +P+T +G GY+ S++ AK A+ AL
Sbjct: 318 LFIGNLSFNANRDGLFNTFGEYGNVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 377
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 378 NGQYIEGRPCRLDFS 392
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E P L+VG LSW + + L+ F G V+ ARV+ +R +R +G++ F + +
Sbjct: 212 EEPATLFVGRLSWNIDDDWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFEGKSFAEK 271
Query: 260 ALS-LNGTDFRGRTI 273
AL+ + G + GR I
Sbjct: 272 ALAEMQGKEIDGRPI 286
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ ETG S+G G++ + +A AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ETGASKGYGFVHYETDEAAAQAIKHV 207
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + I R E + K F +YV N+S V + R
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEM----KANFT-----NVYVKNISPDVTDNEFRE 258
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V S+ + D++G+ +R FGF++F++ +A A LNG DFRG+ + V
Sbjct: 259 LFEKYGDVTSSSLARDQEGK-SRGFGFVNFTTHEAAYKAVDELNGNDFRGQELYVGRAQK 317
Query: 281 RTE 283
+ E
Sbjct: 318 KHE 320
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 27/214 (12%)
Query: 73 INGKDNVGGNEVD-------DDSSVEEPRSRARP---CELYVCNLPRSFDISELLEMFKP 122
+NG D+V VD +D+S P + P LYV L S + L E+F
Sbjct: 22 LNGSDDVKAPAVDTGVSAGAEDASAPTPTAAPHPQNSASLYVGELDPSVTEAMLFELFSQ 81
Query: 123 FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
G V S+ V R+ T S G Y+ S + A+ L+ + + GR R+ +S +
Sbjct: 82 IGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNYTPIKGRPCRIMWSQRDPAL 141
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
+ + +++ NL A+ + L + F FG ++S +V D G
Sbjct: 142 RKTGQG---------------NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETG-A 185
Query: 243 TRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
++ +GF+ + +D A A +NG + + V
Sbjct: 186 SKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 219
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 10/192 (5%)
Query: 54 GFRSVLAVVDEEAVVVEDEING------KDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
G+ V DE A +NG K VG + D + +A +YV N+
Sbjct: 188 GYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNI 247
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+E E+F+ +G V S ++R+ E G SRG G++ + +A A+ L+G+D
Sbjct: 248 SPDVTDNEFRELFEKYGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAYKAVDELNGNDFR 306
Query: 168 GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGR 225
G+E+ V + + R + K Y+ + LY+ NL V + LR F
Sbjct: 307 GQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGVN-LYIKNLDDDVDDDKLRQMFSE 365
Query: 226 FGTVVSARVLHD 237
FG + SA+V+ D
Sbjct: 366 FGPITSAKVMRD 377
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 14/166 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FGTVLS +V+ + +G S+G G++ + +A+NAI L
Sbjct: 125 VFIKNLDTSIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFDNEEAAQNAIKRL 183
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R + E PK VY V NLS EDL+
Sbjct: 184 NGMLINDKQVYVGLFI----RRQEREQTNGSPKFTNVY-------VKNLSETYTDEDLKK 232
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
FG +GT+ SA V+ D G+ +R FGF++F + D+ A LNGT
Sbjct: 233 LFGPYGTITSATVMKDVNGK-SRCFGFVNFQNPDSAAAAVERLNGT 277
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL ++ +L ++F P+GT+ S V ++ G SR G++ + +SA A+ L
Sbjct: 216 VYVKNLSETYTDEDLKKLFGPYGTITSATVMKD-VNGKSRCFGFVNFQNPDSAAAAVERL 274
Query: 162 DGSDVGG-REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G+ + R + V + R +A I ++I YE LY+ NL + E
Sbjct: 275 NGTTINNDRVLYVGRAQRKAEREAELKAKIEQ-ERISRYEKLQGANLYLKNLDDSFSDEK 333
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L++ F FGT+ S +V+ D G+ ++ GF+SFS+ E AL+ +NG
Sbjct: 334 LKDLFSEFGTITSCKVMIDSNGR-SKGSGFVSFSTPEEASKALNEMNG 380
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 14/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL ++ D L + F FG++LS +V+ + G S G G++ + SAKNAI L
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGSILSCKVATD-SLGQSLGYGFVQFDNEESAKNAIDKL 177
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R + E+ I K F + +YV NLS EDL+
Sbjct: 178 NGMLLNDKQVYVGPFL----RKQERESAID--KATF-----NNVYVKNLSETTTEEDLKK 226
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG +GT+ SA V+ D G+ +R FGF++F + D + +LNG F + V +
Sbjct: 227 IFGEYGTITSAVVMRDGNGK-SRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGKAQK 285
Query: 281 RTE 283
++E
Sbjct: 286 KSE 288
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 7/176 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L ++F +GT+ S V R+ G SR G++ + + A ++ AL
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGTITSAVVMRD-GNGKSRCFGFVNFENPDDAAQSVEAL 268
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLR 220
+G +E V + + R + K V + LYV NL ++ + L+
Sbjct: 269 NGKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLK 328
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
F FGT+ S +V+ D G +R GF++FS+ E AL T+ G+ ++ +
Sbjct: 329 ELFSEFGTITSCKVMRDPNG-VSRGSGFVAFSTAEEASRAL----TEMNGKMVVSK 379
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 15/144 (10%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F FGT+ S +V R+P G+SRG G++
Sbjct: 298 EQTLKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDP-NGVSRGSGFV 356
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL-----------ISPPKK 195
+ A A+ ++G V + + V + R +A I P
Sbjct: 357 AFSTAEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQIRPAMAPPIGPRMP 416
Query: 196 IFVYESP---HKLYVGNLSWAVKP 216
I+ +P H+L+ G A+ P
Sbjct: 417 IYPPGTPGIGHQLFYGQGPPAIVP 440
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P LYVG+L V L + F + G VVS RV D + + +G++++++ + A+
Sbjct: 28 PTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQAI 87
Query: 262 S-LNGTDFRGRTI 273
LN T G+ I
Sbjct: 88 EVLNFTPVNGKPI 100
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
+KLYVGNL+++V+ +DL+ FG FG V SA+V+ DR ++ FGF+ SDAE AA+
Sbjct: 3 NKLYVGNLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIE 62
Query: 262 SLNGTDFRGRTIIVREGVDRTE 283
+NG GR I+V E R E
Sbjct: 63 GMNGQSLSGRAIVVNEARPREE 84
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S +L + F FG V S +V + +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEG 63
Query: 161 LDGSDVGGREMRV 173
++G + GR + V
Sbjct: 64 MNGQSLSGRAIVV 76
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 14/166 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FGTVLS +V+ + +G S+G G++ + +A+NAI L
Sbjct: 125 VFIKNLDTSIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFDNEEAAQNAIKRL 183
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R + E PK VY V NLS EDL+
Sbjct: 184 NGMLINDKQVYVGLFI----RRQEREQTNGSPKFTNVY-------VKNLSETYTDEDLKK 232
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
FG +GT+ SA V+ D G+ +R FGF++F + D+ A LNGT
Sbjct: 233 LFGPYGTITSATVMKDVNGK-SRCFGFVNFQNPDSAAAAVERLNGT 277
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 7/168 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL ++ +L ++F P+GT+ S V ++ G SR G++ + +SA A+ L
Sbjct: 216 VYVKNLSETYTDEDLKKLFGPYGTITSATVMKD-VNGKSRCFGFVNFQNPDSAAAAVERL 274
Query: 162 DGSDVGG-REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G+ + R + V + R +A I ++I YE LY+ NL + E
Sbjct: 275 NGTTINNDRVLYVGRAQRKAEREAELKAKIEQ-ERISRYEKLQGANLYLKNLDDSFSDEK 333
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L++ F FGT+ S +V+ D G+ ++ GF+SFS+ E AL+ +NG
Sbjct: 334 LKDLFSEFGTITSCKVMIDSNGR-SKGSGFVSFSTPEEASKALNEMNG 380
>gi|225459201|ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
gi|302142004|emb|CBI19207.3| unnamed protein product [Vitis vinifera]
Length = 294
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 14/187 (7%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE SR R L N+P + ++ +F+ +GTVL VE+S + +T +RG +++MGS
Sbjct: 83 EEEFSRTR---LIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNKTR-NRGLAFISMGS 138
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
A A+ L+ ++ GR ++V ++ N + + + I K + +P+ L++ NL
Sbjct: 139 PEEALAALSNLESYELEGRAIKVNYA---NPQKKKPSSPIQH-KPV----TPYNLFIANL 190
Query: 211 SWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF 268
+ + +DLR F VVSA V+ + + +GF+SF S E D AL S G F
Sbjct: 191 PYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALSSFQGQMF 250
Query: 269 RGRTIIV 275
GR + V
Sbjct: 251 MGRPLRV 257
>gi|147769276|emb|CAN61580.1| hypothetical protein VITISV_008033 [Vitis vinifera]
Length = 294
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 14/187 (7%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE SR R L N+P + ++ +F+ +GTVL VE+S + +T +RG +++MGS
Sbjct: 83 EEEFSRTR---LIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNKTR-NRGLAFISMGS 138
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
A A+ L+ ++ GR ++V ++ N + + + I K + +P+ L++ NL
Sbjct: 139 PEEALAALSNLESYELEGRAIKVNYA---NPQKKKPSSPIQH-KPV----TPYNLFIANL 190
Query: 211 SWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF 268
+ + +DLR F VVSA V+ + + +GF+SF S E D AL S G F
Sbjct: 191 PYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALSSFQGQMF 250
Query: 269 RGRTIIV 275
GR + V
Sbjct: 251 MGRPLRV 257
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 95/173 (54%), Gaps = 20/173 (11%)
Query: 98 RPCEL---YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+P E+ YV +L + + +L+E+FKPFGT+L+V V R+ T S G GY+ + +SA
Sbjct: 20 KPIEIASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSA 79
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ AI +++ VG + +R+ + + R+ Y ++V NL V
Sbjct: 80 EKAIESMNFKRVGDKCVRLMW------QQRDP---------ALRYSGNGNVFVKNLEKDV 124
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
+ L + F +FG+++S +V+ D +G+ +R +GF+ F + + +DA + +NG
Sbjct: 125 DSKSLHDIFTKFGSILSCKVMQDEEGK-SRGYGFVHFKDETSAKDAIVKMNGA 176
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D L ++F FG++LS +V ++ E G SRG G++ SAK+AI+ +
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 162 DG-SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +D + + + + R AL++ + +Y+ + V + +
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVA---------NFTNVYIKQVLPTVNKDVIE 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS------LNGTDFRGRTII 274
F +FG + SA D+ G RVF F +F + A+ ++G G +
Sbjct: 225 KFFAKFGGITSAAACKDKSG---RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLY 281
Query: 275 VREGVDRTE 283
V+ R+E
Sbjct: 282 VQRAQPRSE 290
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII--ALDGSDVGGREMRVRF 175
+ F FG + S ++ + C + A A+ +DG G ++ V+
Sbjct: 225 KFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQ- 283
Query: 176 SIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
++ R +E LI+ +K +++ + LYV N DL F +G V S RV
Sbjct: 284 ----RAQPR-SERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRV 338
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ G +R FGF+SFS+ E +AAL +NG G+ +IV
Sbjct: 339 MVSESG-VSRGFGFVSFSNADEANAALREMNGRMLNGKPLIV 379
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F ++LLE+FK +G V S V + E+G+SRG G+++ + + A A+ +
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVS-ESGVSRGFGFVSFSNADEANAALREM 367
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 368 NGRMLNGKPLIVNIAQRRDQR 388
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D L E+F FG +LS +V+RN + G SRG G++ + SA AI L
Sbjct: 192 VFVKNLNDHIDNVILQELFSKFGDILSCKVARN-DDGTSRGYGFVQFAAQESADIAIENL 250
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S GR++ V I + R+ N + + LY+ NL + E ++
Sbjct: 251 NNSHFEGRQLHVAHFIKKSERSANNDDKYT------------NLYMKNLDDDMTEELIKL 298
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +++ R T++ FGF+SF S D+ + A ++NG +++ V
Sbjct: 299 KFSQFGPLISVKIM-KRDDGTSKGFGFVSFKSPDSAKKAKEAMNGIPLGSKSLYVARAQK 357
Query: 281 RTE 283
+ E
Sbjct: 358 KAE 360
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 6/177 (3%)
Query: 102 LYVCNLPRSFDISELLEM-FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
LY+ NL EL+++ F FG ++SV++ + + G S+G G+++ S +SAK A A
Sbjct: 282 LYMKNLDDDM-TEELIKLKFSQFGPLISVKIMKR-DDGTSKGFGFVSFKSPDSAKKAKEA 339
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDL 219
++G +G + + V + R + + L + +I + +Y+ N+S V E L
Sbjct: 340 MNGIPLGSKSLYVARAQKKAERKQYLQLLHEEKRNEILTKSNGSNVYIKNISDRVDDETL 399
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
R F FG + S +++ D KG ++ FGF+ +++ D + A S+ G F + + V
Sbjct: 400 RERFDEFGNITSVKIMRDDKG-ISKGFGFVCYNTPDEAKCAVSSMRGVMFYDKPLYV 455
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
YV NLP + ++L F+PFG V S V ++P + +RG G++ + A A+ L
Sbjct: 255 YVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLS 314
Query: 163 GSDVGG-----REMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVK 215
G G E+ V + R R K +I Y+ + LYV NL ++
Sbjct: 315 GKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLKLERINKYQGVN-LYVKNLDDLLQ 373
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTII 274
E+LR F +GT+ SARV+ D G +R FGF+ FS+ E A++ +NG G+ +
Sbjct: 374 DEELREAFTNYGTITSARVMRDSTG-NSRGFGFVCFSTPEEAATAVAEMNGKLITGKPVY 432
Query: 275 V 275
V
Sbjct: 433 V 433
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 17/197 (8%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
+SV P + LYV ++ + L E+F G V S+ V R+ T S G Y+
Sbjct: 64 ASVSGPVQPFQTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVN 123
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
++ A+ A+ ++ + + G R+ +S R+ S IFV
Sbjct: 124 FHNLVDAERALDTMNFTCIKGVPCRIMWS------QRDPSLRKSGVGNIFVK-------- 169
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL ++ + L + F FG ++S +V +D GQ ++ +G++ + +++A +A +NG
Sbjct: 170 -NLDPSIDNKALYDTFSLFGNILSCKVANDPTGQ-SKGYGYVHYETAEAATEAINKINGM 227
Query: 267 DFRGRTIIVREGVDRTE 283
G + V R E
Sbjct: 228 LIAGTEVFVGHFQKRQE 244
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL EL E F +GT+ S V R+ TG SRG G++ + A A+ +
Sbjct: 363 LYVKNLDDLLQDEELREAFTNYGTITSARVMRD-STGNSRGFGFVCFSTPEEAATAVAEM 421
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEA 188
+G + G+ + V F+ R EA
Sbjct: 422 NGKLITGKPVYVAFAQRKEVRRAQLEA 448
>gi|440802763|gb|ELR23692.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 425
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 113/214 (52%), Gaps = 15/214 (7%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFG--T 125
++E NG D+ G+ ++S+ ++ ++ P ++ NLP S + + + F+ G
Sbjct: 150 DEEENGDDSSTGDA--EESNTKKAKTDETPSNANFFIGNLPWSAEEDTVKQFFESQGVSA 207
Query: 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN 185
V +V + + +TG +G GY+ + S +A++AL+G+D GRE++V + N R N
Sbjct: 208 VYAVRLITDRDTGRKKGFGYIETSA--SDVDAVLALNGADFEGRELKVDKA---NERPAN 262
Query: 186 AEALISP---PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
A+ P P++ + +++GNLS+ + + +FGTV + R+++DR+ Q
Sbjct: 263 ADRDTKPRDAPRQSGEAATDGNVFLGNLSFNSTEDSIWAALEQFGTVKAVRIVYDRETQR 322
Query: 243 TRVFGFISFSSDAERDAALSLNGT-DFRGRTIIV 275
R FG+ F + A++ +GT D GR I +
Sbjct: 323 PRGFGYCEFEDADTANKAIAASGTVDVDGRQIRI 356
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 154 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + I R E + K + +YV N++ V E+ R
Sbjct: 213 NGMLLNEKKVYVGYHIPKKDRQSKFEEM----KANYT-----NVYVKNINLEVTEEEFRE 263
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V S+ + D++G+ +R FGF++FS+ D+ A LNG +FRG+ + V
Sbjct: 264 LFSKYGEVTSSTLARDQEGK-SRGFGFVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQK 322
Query: 281 RTE 283
+ E
Sbjct: 323 KHE 325
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 20/189 (10%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SS P+S A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 55 SSAPHPQSSA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 111
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S + A+ L+ + + GR R+ +S + + + +++
Sbjct: 112 YNSTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 156
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A +NG
Sbjct: 157 KNLDTAIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETDEAAAQAIKHVNGM 215
Query: 267 DFRGRTIIV 275
+ + V
Sbjct: 216 LLNEKKVYV 224
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 14/194 (7%)
Query: 54 GFRSVLAVVDEEAVVVEDEING------KDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
G+ V DE A +NG K VG + D + +A +YV N+
Sbjct: 193 GYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYTNVYVKNI 252
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
E E+F +G V S ++R+ E G SRG G++ + +SA A+ L+G +
Sbjct: 253 NLEVTEEEFRELFSKYGEVTSSTLARDQE-GKSRGFGFVNFSTHDSAAKAVEELNGKEFR 311
Query: 168 GREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHF 223
G+E+ V + + R ++ EA + +K Y+ + LY+ NL+ + + LR F
Sbjct: 312 GQELYVGRAQKKHEREEELRKSYEAARA--EKANKYQGVN-LYIKNLADDIDDDKLRQMF 368
Query: 224 GRFGTVVSARVLHD 237
FG + SA+V+ D
Sbjct: 369 SEFGPITSAKVMRD 382
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 92/166 (55%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +L + + +L+E+FKPFGT+L+V V R+ T S G GY+ + +SA+ AI ++
Sbjct: 27 IYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIESM 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V + L +
Sbjct: 87 NFKRVGDKCVRLMW------QQRDP---------ALRYSGNGNVFVKNLEKDVDSKSLHD 131
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
F +FG+++S +V+ D +G+ +R +GF+ F + + +DA + +NG
Sbjct: 132 IFTKFGSILSCKVMQDEEGK-SRGYGFVHFKDETSAKDAIVKMNGA 176
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D L ++F FG++LS +V ++ E G SRG G++ SAK+AI+ +
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 162 DG-SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +D + + + + R AL++ + Y+ + V E +
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFTNV---------YIKQVLPTVNKEVIE 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS------LNGTDFRGRTII 274
F +FG + SA D+ G RVF F +F + A+ ++G G +
Sbjct: 225 KFFAKFGGITSAAACKDKSG---RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLY 281
Query: 275 VREGVDRTE 283
V+ R+E
Sbjct: 282 VQRAQPRSE 290
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 12/167 (7%)
Query: 114 SELLE-MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII--ALDGSDVGGRE 170
E++E F FG + S ++ + C + A A+ +DG G +
Sbjct: 220 KEVIEKFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEK 279
Query: 171 MRVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRNHFGRFGTV 229
+ V+ ++ R +E LI+ +K ++S + LYV N DL F +G V
Sbjct: 280 LYVQ-----RAQPR-SERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGEV 333
Query: 230 VSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
S RV+ G +R FGF+SFS+ E +AAL +NG G+ +IV
Sbjct: 334 KSCRVMVSESG-ASRGFGFVSFSNADEANAALREMNGRMLNGKPLIV 379
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F ++LLE+FK +G V S V + E+G SRG G+++ + + A A+ +
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVS-ESGASRGFGFVSFSNADEANAALREM 367
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 368 NGRMLNGKPLIVNIAQRRDQR 388
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 92/166 (55%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +L + + +L+E+FKPFGT+L+V V R+ T S G GY+ + +SA+ AI ++
Sbjct: 27 IYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIESM 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V + L +
Sbjct: 87 NFKRVGDKCVRLMW------QQRDP---------ALRYSGNGNVFVKNLEKDVDSKSLHD 131
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
F +FG+++S +V+ D +G+ +R +GF+ F + + +DA + +NG
Sbjct: 132 IFTKFGSILSCKVMQDEEGK-SRGYGFVHFKDETSAKDAIVKMNGA 176
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D L ++F FG++LS +V ++ E G SRG G++ SAK+AI+ +
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 162 DG-SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +D + + + + R AL++ + Y+ + V + +
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFTNV---------YIKQVLPTVNKDVIE 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS------LNGTDFRGRTII 274
F +FG + SA D+ G RVF F +F + A+ ++G G +
Sbjct: 225 KFFAKFGGITSAAACKDKSG---RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLY 281
Query: 275 VREGVDRTE 283
V+ R+E
Sbjct: 282 VQRAQPRSE 290
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 11/162 (6%)
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII--ALDGSDVGGREMRVRF 175
+ F FG + S ++ + C + A A+ +DG G ++ V+
Sbjct: 225 KFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQ- 283
Query: 176 SIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
++ R +E LI+ +K +++ + LYV N DL F +G V S RV
Sbjct: 284 ----RAQPR-SERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRV 338
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ G +R FGF+SFS+ E +AAL +NG G+ +IV
Sbjct: 339 MVSESG-VSRGFGFVSFSNADEANAALREMNGRMLNGKPLIV 379
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F ++LLE+FK +G V S V + E+G+SRG G+++ + + A A+ +
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVS-ESGVSRGFGFVSFSNADEANAALREM 367
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 368 NGRMLNGKPLIVNIAQRRDQR 388
>gi|126273923|ref|XP_001387749.1| nuclear localization sequence binding protein [Scheffersomyces
stipitis CBS 6054]
gi|126213619|gb|EAZ63726.1| nuclear localization sequence binding protein, partial
[Scheffersomyces stipitis CBS 6054]
Length = 245
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D L F+P G V+S V TG SRG GY+ S ++A+ A+
Sbjct: 2 PATLFVGRLSWNIDDEWLRREFEPLGGVISARVIMERATGKSRGYGYVDFDSKSAAEKAL 61
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
G ++ GR + + S T++ E S L++GNLS+ ++
Sbjct: 62 NEYQGRELDGRPINLDMSTGKPHVTKSTENRAKQYGDTPSAPS-DTLFIGNLSFNADRDN 120
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
L N FG GTV+S R+ Q + FG++ FSS E AA+ +LNG GR
Sbjct: 121 LFNIFGVHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAAMEALNGEYIEGR 174
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + D L +F GTV+S + +P+T +G GY+ S++ AK A+ AL
Sbjct: 107 LFIGNLSFNADRDNLFNIFGVHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAAMEAL 166
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 167 NGEYIEGRACRLDFS 181
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P L+VG LSW + E LR F G V+SARV+ +R +R +G++ F S + + AL
Sbjct: 2 PATLFVGRLSWNIDDEWLRREFEPLGGVISARVIMERATGKSRGYGYVDFDSKSAAEKAL 61
Query: 262 S-LNGTDFRGRTI 273
+ G + GR I
Sbjct: 62 NEYQGRELDGRPI 74
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL S D L EMF FGT+LS +V+ + G S+G G++ + SA++AI
Sbjct: 125 ANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVATD-SAGQSKGYGFVQYETEESAQDAIN 183
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G REM V ++ R RN E + +Y+ NL +DL
Sbjct: 184 RLNGMLANDREMFV----GLHMRRRNREVKFT------------NVYIKNLPTEFSDDDL 227
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
R F FG + SA V+ D G ++ FGF++F + +A NG +T+ V
Sbjct: 228 RQEFAPFGEITSAVVMRDVNG-VSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRA 286
Query: 279 VDRTE 283
+ E
Sbjct: 287 QKKAE 291
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S D ++L +F ++SV V R+ +G+S G GY+ S A A+ AL
Sbjct: 39 LYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALEAL 98
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ +RV FS S ++ A L+V NL ++ ++L
Sbjct: 99 NFAPLSGKHIRVMFSNRDPSLRKSGRA---------------NLFVKNLEPSIDSKNLYE 143
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FGT++S +V D GQ ++ +GF+ + + ++ +DA LNG R + V
Sbjct: 144 MFSSFGTILSCKVATDSAGQ-SKGYGFVQYETEESAQDAINRLNGMLANDREMFV 197
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 5/167 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NLP F +L + F PFG + S V R+ G+S+ G++ A A+
Sbjct: 213 VYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRD-VNGVSKCFGFVNFEKPEFALEAVKKA 271
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPEDL 219
+G + + + V + R + + + P+ LY+ N+ ++ E L
Sbjct: 272 NGKVINDKTLYVGRAQKKAERQAELKTKFKQEDRDKKVDKPNGINLYLKNIDDSINDEGL 331
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNG 265
+ F FG V S +V+ D +G+ ++ GF+ F+ ++A A +NG
Sbjct: 332 KILFEEFGQVTSCKVMVDAQGR-SKGSGFVLFATAEAGHSAINGMNG 377
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 17/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L+E+FKPFGT+L+V V R+ T S G GY+ S +SA A+ AL
Sbjct: 31 LYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAKAMEAL 90
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + MR+ + + R+ Y ++V NL V +L
Sbjct: 91 NFKRVGDKCMRIMW------QQRDP---------TLRYSGNGNIFVKNLKNEVDSRELSV 135
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNG 265
F +FG ++S +V+ D +G+ +R +GF+ F +D A ++A ++NG
Sbjct: 136 IFKKFGDILSCKVMEDEEGK-SRGYGFVHFKNDNAAKEAIENMNG 179
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D EL +FK FG +LS +V + E G SRG G++ + N+AK AI +
Sbjct: 119 IFVKNLKNEVDSRELSVIFKKFGDILSCKVMED-EEGKSRGYGFVHFKNDNAAKEAIENM 177
Query: 162 DG-SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G D E ++ + N RNA + + +Y+ + V E +
Sbjct: 178 NGEKDHADEEKKMGLYV-ANFIRRNARLAT-------LVANFTNVYIKQVLPTVDKEVIE 229
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDF 268
F +FG + S+ D+ G RVF F +F + A+ + F
Sbjct: 230 KFFSKFGGITSSATCKDKNG---RVFAFCNFEKHEDAVKAIEASHEQF 274
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LYV N E+L F +G + S RV+ D G +R FGF+SF + + +AAL +
Sbjct: 314 LYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANG-NSRGFGFVSFENADQANAALREM 372
Query: 264 NGTDFRGRTIIV 275
NG G+ +IV
Sbjct: 373 NGRMLNGKPLIV 384
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F L E+FK +G + S V + G SRG G+++ + + A A+ +
Sbjct: 314 LYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDA-NGNSRGFGFVSFENADQANAALREM 372
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 373 NGRMLNGKPLIVNIAQRRDQR 393
>gi|301106378|ref|XP_002902272.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098892|gb|EEY56944.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 528
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 5/184 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+++V LP D + L E FKPFG + +V + +TG SRG G++T +A +A+
Sbjct: 12 KVFVAGLPVHVDDNALYEKFKPFGEMHQSKVVYDQKTGRSRGFGFVTFCEYTNALDAVDQ 71
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-----KLYVGNLSWAVK 215
L+ S R + VRF N + K+ P +YVGNL++ +
Sbjct: 72 LNQSKWEKRTLNVRFLQPKNGSDAGGNGAAAIAKRPTKVIGPRPEGCTTIYVGNLAYDIT 131
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
E LR F + G++ + R + + R FG++ F + +AA+ L+G GR + +
Sbjct: 132 EEVLRKVFDKCGSIRAVRFAEHIQTKEFRGFGYVQFHEEGPCEAAVKLDGMVVMGRPMSI 191
Query: 276 REGV 279
G
Sbjct: 192 DYGA 195
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
++ +K++V L V L F FG + ++V++D+K +R FGF++F
Sbjct: 6 LWRDRNKVFVAGLPVHVDDNALYEKFKPFGEMHQSKVVYDQKTGRSRGFGFVTFCEYTNA 65
Query: 258 -DAALSLNGTDFRGRTIIVR 276
DA LN + + RT+ VR
Sbjct: 66 LDAVDQLNQSKWEKRTLNVR 85
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 9/180 (5%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ +YV NL S + + EMF FG + S V + E G S+G G++ + A
Sbjct: 216 RAKFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTD-EEGKSKGFGFINFENYEDAH 274
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ L+ ++ G+ + V + R K K+ Y+ + LY+ NL
Sbjct: 275 KAVDTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVN-LYIKNLDDD 333
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
+ E LR F +G + SA+V+ D KG T++ FGF+ FSS E A+ T+ GR I
Sbjct: 334 IDDEKLRQEFSVYGVITSAKVMCDEKG-TSKGFGFVCFSSPDEATKAV----TEMNGRMI 388
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 14/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +++ + E+G S+G G++ + +A NAI +
Sbjct: 129 VFIKNLDTSIDNKALHDTFSAFGNILSCKIALD-ESGNSKGYGFVHYETEEAADNAIKHV 187
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +++ V I R +A I + F +YV NL ++ E +
Sbjct: 188 DGMLLNDKKVYVGRHIPRKER----QAKIEQIRAKFT-----NVYVKNLDESINDEQFKE 238
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIVREGV 279
F +FG + SA V D +G+ ++ FGFI+F + DA + A +LN T+ G+T+ V
Sbjct: 239 MFSKFGPITSALVQTDEEGK-SKGFGFINFENYEDAHK-AVDTLNETEHNGKTLYVARAQ 296
Query: 280 DRTE 283
+TE
Sbjct: 297 KKTE 300
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L EMF G V S+ V R+ T S G Y+ +I + A+ +L
Sbjct: 41 LYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALESL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S S + +++ NL ++ + L +
Sbjct: 101 NYTLIKGKPCRIMWSQRDPSLRKTGSG---------------NVFIKNLDTSIDNKALHD 145
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S ++ D G ++ +GF+ + ++ D A+ ++G + + V +
Sbjct: 146 TFSAFGNILSCKIALDESG-NSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIP 204
Query: 281 RTE 283
R E
Sbjct: 205 RKE 207
>gi|226532108|ref|NP_001142375.1| uncharacterized protein LOC100274547 [Zea mays]
gi|194708524|gb|ACF88346.1| unknown [Zea mays]
Length = 163
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM---NSRTRN 185
VEV + TG SRG G++TM S A A+ +G GR +RV S R
Sbjct: 2 VEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPPPRDGSAPRA 61
Query: 186 AEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
+S +K+YVGNL+W V L N F G V+ A+V++DR +R
Sbjct: 62 PRGGGGGGGGGSFVDSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRG 121
Query: 246 FGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
FGF+++ S E + A+S L+G D GR I V
Sbjct: 122 FGFVTYGSAEEVNNAISNLDGIDLDGRQIRV 152
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NL D S L +F G VL +V + ++G SRG G++T GS NAI
Sbjct: 80 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISN 139
Query: 161 LDGSDVGGREMRV 173
LDG D+ GR++RV
Sbjct: 140 LDGIDLDGRQIRV 152
>gi|340714141|ref|XP_003395590.1| PREDICTED: hypothetical protein LOC100644519 [Bombus terrestris]
Length = 628
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-------------- 130
D DSS+E+ + R ++V NLP+ +L ++FK FG + ++
Sbjct: 329 DKDSSLEDFKENERT--IFVGNLPKDVTKKQLQKLFKQFGKIDAIRLRGKISKSLNIPKR 386
Query: 131 ---VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
++ + + Y+ S S K A+ +++G+ G +RV S N +
Sbjct: 387 VAAITNDLHPKMKSVYAYIRFESEESTKKAL-SINGTKFEGNYVRVDMSTKSNDK----- 440
Query: 188 ALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
YE+ +++GNL + V + +RNHF R G + S R++ D + + FG
Sbjct: 441 -----------YETKKSVFIGNLHFNVDDDSVRNHFKRCGEIQSVRIIRDNQTGVGKGFG 489
Query: 248 FISFSSDAERDAALSLNGTDFRGRTIIVREGVDR 281
+++F S+ AL L+GT R + V+ +D+
Sbjct: 490 YVNFKSEDAVALALELDGTTILNREVRVKPNIDQ 523
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 51 HPAGFRSVLAVV---DEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
HP +SV A + EE+ ING GN V D S + +++ NL
Sbjct: 395 HPK-MKSVYAYIRFESEESTKKALSING-TKFEGNYVRVDMSTKSNDKYETKKSVFIGNL 452
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D + FK G + SV + R+ +TG+ +G GY+ S ++ A+ LDG+ +
Sbjct: 453 HFNVDDDSVRNHFKRCGEIQSVRIIRDNQTGVGKGFGYVNFKSEDAVALAL-ELDGTTIL 511
Query: 168 GREMRVRFSIDMNSRTR 184
RE+RV+ +ID + RT+
Sbjct: 512 NREVRVKPNIDQDKRTK 528
>gi|226499642|ref|NP_001147738.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195613392|gb|ACG28526.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414585685|tpg|DAA36256.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 272
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 13/174 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP SF E+ ++F GTV VEV + + G +RG ++TM + A A
Sbjct: 67 KLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKD-GRNRGFAFVTMSTAEEAAAAADK 125
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ DV GR ++V FS + E HKLYV NL W + +++
Sbjct: 126 LNSHDVMGRTIKVEFSKSFRRPAPPPPPGT-------IIER-HKLYVSNLPWKARAPNVK 177
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 273
F F +SA V+ D +GF+SF + E +AAL+ L+G + GR +
Sbjct: 178 EFFANFNP-LSANVIFDNGKAAG--YGFVSFGTKEEAEAALTELDGKELLGRPV 228
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 187 EALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
EA +P + E KLYV NL W+ ++ F + GTV V+ + G+ R F
Sbjct: 50 EAQAAPVAEDEQGEKRRKLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKDGR-NRGF 108
Query: 247 GFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F++ S+ E AA LN D GRTI V
Sbjct: 109 AFVTMSTAEEAAAAADKLNSHDVMGRTIKV 138
>gi|390594976|gb|EIN04384.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 611
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 15/179 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D +L F G V+S V+ + TG SRG G++ +S + AI +
Sbjct: 345 IFVGRLSWNVDDDQLASEFAECGEVVSARVNIDRNTGKSRGFGHVEFADASSVQKAIDTM 404
Query: 162 DGSDVGGREMRVRFSIDMN---SRTRNAEAL---ISPPKKIFVYESPHKLYVGNLSWAVK 215
+G ++ GR + V + +N R A+A S P + L+VGNLSW
Sbjct: 405 NGKEIDGRPVNVDRAPGLNKNQQRENRAKAFGDSTSAPSSV--------LFVGNLSWDAT 456
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ + FG G V S R+ DR+ + FG++ F DA + A +L+GT+ GR+I
Sbjct: 457 EDAVWEAFGEHGEVKSVRLPTDRESGRPKGFGYVEFVDVDAAKAAFEALSGTEIGGRSI 515
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 167 GGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRF 226
GG+ + + +T+ A+ +P ++ E ++VG LSW V + L + F
Sbjct: 310 GGKRKAEDDAPSASKKTKLADGSAAPAEQ---EEESKTIFVGRLSWNVDDDQLASEFAEC 366
Query: 227 GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
G VVSARV DR +R FG + F+ + A+ ++NG + GR + V
Sbjct: 367 GEVVSARVNIDRNTGKSRGFGHVEFADASSVQKAIDTMNGKEIDGRPVNV 416
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL S+D +E + E F G V SV + + E+G +G GY+ +++AK A
Sbjct: 446 LFVGNL--SWDATEDAVWEAFGEHGEVKSVRLPTDRESGRPKGFGYVEFVDVDAAKAAFE 503
Query: 160 ALDGSDVGGREMRVRFS 176
AL G+++GGR +R+ +S
Sbjct: 504 ALSGTEIGGRSIRLDYS 520
>gi|429242947|ref|NP_594207.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe 972h-]
gi|391358175|sp|Q9P3U1.3|YKX5_SCHPO RecName: Full=Uncharacterized RNA-binding protein C328.05
gi|347834162|emb|CAB96000.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe]
Length = 464
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP + +L ++F+ G+V+ ++ N E G SRG G + M S+ A +AI
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQM 238
Query: 161 LDGSDVGGREMRVR-----------FSIDMNSRTRNAEALISPPKKIF------------ 197
L +D GR + VR +S N T AE ++
Sbjct: 239 LHNTDFMGRTLEVRLDRFAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANTQVEDL 298
Query: 198 VYES-PHK-----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
VY + PH +YVGNL WA +L + F G+V+ AR+ ++ G+ ++ FG + F
Sbjct: 299 VYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGR-SKGFGVVQF 357
Query: 252 SSDAERDAALS---LNGTDFRGRTI 273
+ E DAA S LNG + GR +
Sbjct: 358 EN--ENDAASSIEKLNGYRYGGRPL 380
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL EL E G VL+ E+ P G+S+GC + + A+ AI L
Sbjct: 79 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GR + +R + N+R ++ S E +L+VGNL + V+ +DL++
Sbjct: 138 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLKD 197
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F + G+V+ A + +++G++ R G + SS E A+ L+ TDF GRT+ VR
Sbjct: 198 LFRQAGSVIRADIQMNQEGRS-RGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVR 252
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 99 PCE--LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
PC +YV NLP + LL++F G+V+ ++ P TG S+G G + + N A +
Sbjct: 307 PCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAAS 365
Query: 157 AIIALDGSDVGGREMRVRFS 176
+I L+G GGR +++ ++
Sbjct: 366 SIEKLNGYRYGGRPLQLSYA 385
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALS 262
++YVGNLS+ V+ +L+ G+ G V++ +L+ G ++ I +S+ E R A +
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNG-LSKGCAIIEYSTAEEARTAIKT 136
Query: 263 LNGTDFRGRTIIVREGVDRTES 284
L+ F GR + +RE DR ++
Sbjct: 137 LSNQKFMGRLVYIRE--DREQN 156
>gi|241947949|ref|XP_002416697.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
gi|223640035|emb|CAX44279.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
Length = 423
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 6/176 (3%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D S L F+ G V+S V TG SRG GY+ + ++A+ A+
Sbjct: 195 PATLFVGRLSWNIDDSWLKREFEHIGGVISARVIMERATGKSRGYGYVDFETKSAAEKAL 254
Query: 159 IALDGSDVGGREMRVRFSIDM--NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+ G ++ GR + + S SR+ N A + + ++ L+VGNLS+
Sbjct: 255 EEMQGKEIDGRPINLDMSTGKPHASRSTNDRAKQYGDSQSALSDT---LFVGNLSFNANR 311
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
++L FG +G V+S RV Q + FG++ FSS E AAL +LNG GR
Sbjct: 312 DNLFTVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEALNGEYIEGR 367
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 187 EALISPPKK---IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
E + +P KK V E P L+VG LSW + L+ F G V+SARV+ +R +
Sbjct: 177 EEVSTPVKKSKPAAVNEEPATLFVGRLSWNIDDSWLKREFEHIGGVISARVIMERATGKS 236
Query: 244 RVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
R +G++ F + + + AL + G + GR I
Sbjct: 237 RGYGYVDFETKSAAEKALEEMQGKEIDGRPI 267
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL + + L +F +G V+S V +P+T +G GY+ S++ AK A+ AL
Sbjct: 300 LFVGNLSFNANRDNLFTVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 359
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 360 NGEYIEGRPCRLDFS 374
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 91/166 (54%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +L + + +L+E+FKPFGT+L+V V R+ T S G GY+ + SA+ AI ++
Sbjct: 27 IYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKAIESM 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V + L +
Sbjct: 87 NFKRVGDKCVRLMW------QQRDP---------ALRYSGNGNVFVKNLEKDVDSKSLHD 131
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
F +FG+++S +V+ D +G+ +R +GF+ F + + +DA + +NG
Sbjct: 132 IFTKFGSILSCKVMQDEEGK-SRGYGFVHFKDETSAKDAIVKMNGA 176
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D L ++F FG++LS +V ++ E G SRG G++ SAK+AI+ +
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 162 DG-SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +D + + + + R AL++ + Y+ + V E +
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFTNV---------YIKQVLPTVSKEVIE 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS------LNGTDFRGRTII 274
F +FG + SA D+ G RVF F +F + A+ ++G G +
Sbjct: 225 KFFAKFGGITSAAACKDKSG---RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLY 281
Query: 275 VREGVDRTE 283
V+ R+E
Sbjct: 282 VQRAQPRSE 290
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
Query: 115 ELLE-MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII--ALDGSDVGGREM 171
E++E F FG + S ++ + C + A A+ +DG G ++
Sbjct: 221 EVIEKFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKL 280
Query: 172 RVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRNHFGRFGTVV 230
V+ ++ R +E LI+ +K ++S + LYV N DL F +G V
Sbjct: 281 YVQ-----RAQPR-SERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGDVK 334
Query: 231 SARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
S RV+ G +R FGF+SFS+ E +AAL +NG G+ +IV
Sbjct: 335 SCRVMVSESG-ASRGFGFVSFSNADEANAALREMNGRMLNGKPLIV 379
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F ++LLE+FK +G V S V + E+G SRG G+++ + + A A+ +
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGDVKSCRVMVS-ESGASRGFGFVSFSNADEANAALREM 367
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 368 NGRMLNGKPLIVNIAQRRDQR 388
>gi|313230477|emb|CBY18692.1| unnamed protein product [Oikopleura dioica]
Length = 227
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP+SF E +F G V + R+ +TG S G G++ M S + A+ AI L
Sbjct: 73 LIVNYLPQSFTDQEFFNLFSTVGRVNKARIIRHRQTGYSFGYGFIDMASADDAERAIRKL 132
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +G + ++V +S+ RTRN LY+ L +L +
Sbjct: 133 NQYQIGHKRLKVAYSLPSGDRTRNIN-----------------LYIKGLPKHWTRRELED 175
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
HF RFG + +AR+L D QT GF+ ++ A + A +NG
Sbjct: 176 HFTRFGAIRNARILFDPATQTGSGVGFLLYAEKAMAERACEEMNG 220
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 17/189 (8%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E RAR E +YV NL D L ++F FG +LSV+V ++ G SRG G++
Sbjct: 180 EAELRARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKD-NNGHSRGFGFVNF 238
Query: 149 GSINSAKNAIIALDGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHK 204
A+ A++ ++G +V GR++ R + ++ N R E + ++ Y+ +
Sbjct: 239 EKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQ--DRLNRYQGVN- 295
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYV NL ++ E LR F +G + SA+V+ + G ++ FGF+ FSS E A+
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV--- 350
Query: 265 GTDFRGRTI 273
T+ GR I
Sbjct: 351 -TEMNGRII 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHV 208
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ V E+ R
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNINNEVTDEEFRE 259
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG V S+ + D++G+ +R FGF++F++ +A A LNG DFRG+ + V
Sbjct: 260 LFAKFGEVTSSSLARDQEGK-SRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQK 318
Query: 281 RTE 283
+ E
Sbjct: 319 KHE 321
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ E E+F
Sbjct: 212 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNVYVKNINNEVTDEEFRELF 261
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
FG V S ++R+ E G SRG G++ + +A A+ L+G D G+++ V + +
Sbjct: 262 AKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKH 320
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NL V + LR F +G + SA+V+ D
Sbjct: 321 EREEELRKSYEAARLEKANKYQGVN-LYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRD 378
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 19/178 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV L S + L E+F G+V S+ V R+ T S G Y+ + + A+
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 160 ALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L+ + + GR R+ +S D R A +++ NL A+ +
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGA----------------GNIFIKNLDAAIDNKA 163
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
L + F FG ++S +V D G ++ +GF+ + +D A A +NG + + V
Sbjct: 164 LHDTFAAFGNILSCKVAQDEHG-NSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 220
>gi|300121123|emb|CBK21504.2| unnamed protein product [Blastocystis hominis]
Length = 302
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 10/183 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++ V LP S D S L + F+ G + V N E SRG G++T S +A N +
Sbjct: 5 KVIVLGLPFSCDDSALYDYFQECGEITDSRVMVNRENKKSRGFGFVTFAS-EAAFNNALE 63
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNA-----EALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G++ GR ++V + + R + + + PK+ +K+ + +L+W+V
Sbjct: 64 KNGAEFDGRTIKVEKATERPKRDQKENKDRPQHEQAAPKEFI---DTNKIIITSLAWSVN 120
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTII 274
+ LR F ++G + VL DR+ +R G + F++ +A + A +NGT+ GR I
Sbjct: 121 DDSLRQAFSKYGNLEECTVLKDRQSGKSRGRGIVRFATEEAMKKAIEEMNGTELEGRAIA 180
Query: 275 VRE 277
VR+
Sbjct: 181 VRQ 183
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
S +K+ V L ++ L ++F G + +RV+ +R+ + +R FGF++F+S+A + A
Sbjct: 2 SENKVIVLGLPFSCDDSALYDYFQECGEITDSRVMVNRENKKSRGFGFVTFASEAAFNNA 61
Query: 261 LSLNGTDFRGRTIIVREGVDR 281
L NG +F GRTI V + +R
Sbjct: 62 LEKNGAEFDGRTIKVEKATER 82
>gi|344231201|gb|EGV63083.1| hypothetical protein CANTEDRAFT_106956 [Candida tenuis ATCC 10573]
Length = 231
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 15/180 (8%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D L F+P G V+S V TG SRG GY+ S A+ A+
Sbjct: 2 PATLFVGRLSWNIDDDWLKREFEPSGGVISARVIMERATGKSRGYGYVDFESKADAEKAL 61
Query: 159 IALDGSDVGGREMRVRFSID------MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
G ++ GR + + S N R + ++S P L++GNLS+
Sbjct: 62 QDFQGKEIDGRPINLDLSTSKPQTPAKNDRAKKFGDVVSAPSDT--------LFIGNLSF 113
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
+ L FG++G V+S R+ Q + FG++ + S E AAL +LNG GR
Sbjct: 114 NATRDKLFEAFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEALNGEYIEGR 173
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + +L E F +G V+S + +P+T +G GY+ GSI AK A+ AL
Sbjct: 106 LFIGNLSFNATRDKLFEAFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEAL 165
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ +S
Sbjct: 166 NGEYIEGRPCRLDYS 180
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P L+VG LSW + + L+ F G V+SARV+ +R +R +G++ F S A+ + AL
Sbjct: 2 PATLFVGRLSWNIDDDWLKREFEPSGGVISARVIMERATGKSRGYGYVDFESKADAEKAL 61
Query: 262 SLNGTDFRGRTIIVR 276
DF+G+ I R
Sbjct: 62 Q----DFQGKEIDGR 72
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + E+ MF GTV S + R+ E G S+G G++ A +A+ AL
Sbjct: 221 VFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDE-GKSKGFGFINFEEPEQAASAVQAL 279
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISP--PKKIFVYESPHKLYVGNLSWAVKPEDL 219
+G DV +E+ V + R A ++I Y+ LYV NL + E L
Sbjct: 280 NGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQG-MNLYVKNLHDDIDDETL 338
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
R F +FGT+ SA+V+ D G+ +R FGF+ ++S E A++ +NG +G+ I V
Sbjct: 339 RTEFSQFGTITSAKVMVDSAGK-SRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYV 394
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI---NSAKNAI 158
LYV +L R ++L E+F G V S+ V R+ T S G Y+ S+ +A+ A+
Sbjct: 40 LYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERAL 99
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L+ + + GR MR+ +S R+ F +++ NL +V +
Sbjct: 100 DQLNYTPLVGRPMRIMWS------HRDP---------AFRKSGVGNIFIKNLDRSVDNKA 144
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVRE 277
L + F FG ++S +V D KG+ ++ +GF+ F D + R A +NG G+ + V
Sbjct: 145 LHDTFSAFGNILSCKVAQDLKGE-SKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGP 203
Query: 278 GVDRTE 283
+ R+E
Sbjct: 204 FLRRSE 209
>gi|27527723|emb|CAC86462.1| glycin-rich RNA binding protein [Polytomella sp. Pringsheim 198.80]
Length = 177
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 47/74 (63%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
+LYVGNLSW K EDLR +FG+FG V A + DR+ +R FGF++ +D +DA
Sbjct: 4 RLYVGNLSWNAKEEDLRTYFGKFGEVEEASIALDRESGRSRGFGFVTLPADVAKDAIEKT 63
Query: 264 NGTDFRGRTIIVRE 277
NG +F GR I V E
Sbjct: 64 NGAEFMGRNIKVNE 77
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + +L F FG V ++ + E+G SRG G++T+ + AK+AI
Sbjct: 5 LYVGNLSWNAKEEDLRTYFGKFGEVEEASIALDRESGRSRGFGFVTL-PADVAKDAIEKT 63
Query: 162 DGSDVGGREMRV 173
+G++ GR ++V
Sbjct: 64 NGAEFMGRNIKV 75
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV NL V E+ R
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNLDTKVTNEEFRE 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
FG++G + SA + HD + +R FGF++F AA+ LN +F+G+ + V
Sbjct: 255 LFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQK 314
Query: 281 RTE 283
+ E
Sbjct: 315 KHE 317
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 19/182 (10%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV NL E E+F
Sbjct: 207 LLNEKKVFVGHHIAKKDR--------QSKFEE--MKANFTNVYVKNLDTKVTNEEFRELF 256
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-----RF 175
+G + S ++ + ETG SRG G++ SA A+ L+ + G+++ V +
Sbjct: 257 GKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKH 316
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
+ R ++ A + +K Y+ + LYV NL+ + E LR+ F FG + SARV+
Sbjct: 317 EREEELRKQHEAARV---EKASKYQGVN-LYVKNLTDDIDDEKLRDLFIGFGNITSARVM 372
Query: 236 HD 237
D
Sbjct: 373 RD 374
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 28/217 (12%)
Query: 69 VEDEING---KDNVGGNEVDDDSSVEEPRSRA------RPCELYVCNLPRSFDISELLEM 119
VE NG NV + D S E P S A LYV L S + L E+
Sbjct: 17 VESSTNGTTVNTNVANDAAGDGS--ETPNSAAPSTTQPHSASLYVGELDSSVTEAMLFEL 74
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F G V S+ V R+ T S G Y+ + + A+ L+ + + G+ R+ +S
Sbjct: 75 FSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRD 134
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
+ + + +++ NL A+ + L + F FG ++S +V D
Sbjct: 135 PALRKTGQG---------------NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF 179
Query: 240 GQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
G ++ +GF+ + +++A +A +NG + + V
Sbjct: 180 G-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 215
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V ED R+
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEM----KANFT-----NIYVKNIDLDVSDEDFRD 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F + G + SA + D +G+ +R FGF+++ AA+ +LN TDFRG+ + V
Sbjct: 248 LFEKHGDITSASIARDDQGK-SRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQK 306
Query: 281 RTE 283
+ E
Sbjct: 307 KHE 309
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 17/192 (8%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P LYV L S + L E+F G V S+ V R+ T S G Y+ S
Sbjct: 41 PAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSE 100
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ A+ L+ + + G+ R+ +S + + + +++ NL
Sbjct: 101 DGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDH 145
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGR 271
A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 146 AIDNKALHDTFAAFGNILSCKVAQDELG-NSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Query: 272 TIIVREGVDRTE 283
+ V + + E
Sbjct: 205 KVFVGHHIPKKE 216
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +YV N+ + ++F+ G + S ++R+ + G SRG G++ +A
Sbjct: 225 KANFTNIYVKNIDLDVSDEDFRDLFEKHGDITSASIARD-DQGKSRGFGFVNYIKHEAAS 283
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ AL+ +D G+++ V + + R + K Y+ + LY+ NL+
Sbjct: 284 AAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVN-LYIKNLNDD 342
Query: 214 VKPEDLRNHFGRFGTVVSARVLHD 237
V E LR+ F FGT+ SA+V+ D
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVMRD 366
>gi|313246014|emb|CBY34981.1| unnamed protein product [Oikopleura dioica]
Length = 225
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP+SF E +F G V + R+ +TG S G G++ M S + A+ AI L
Sbjct: 73 LIVNYLPQSFTDQEFFNLFSTVGRVNKARIIRHRQTGYSFGYGFIDMASADDAERAIRKL 132
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +G + ++V +S+ RTRN LY+ L +L +
Sbjct: 133 NQYQIGHKRLKVAYSLPSGDRTRNIN-----------------LYIKGLPKHWTRRELED 175
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
HF RFG + +AR+L D QT GF+ ++ A + A +NG
Sbjct: 176 HFTRFGAIRNARILFDPATQTGTGVGFLLYAEKAMAERACEEMNG 220
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 99/185 (53%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL ++ D L + F FG +LS +++ + +G+S+G G++ + +A+NAI
Sbjct: 123 ANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATD-ASGLSKGYGFVQFDNEEAAQNAID 181
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R ++ E +S K F + +YV NLS + E+L
Sbjct: 182 KLNGMLINDKQVYVGHFL----RKQDRENALS--KTKF-----NNVYVKNLSESTTDEEL 230
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+FG +GT+ SA ++ D G+ +R FGF++F + D A LNG F + V +
Sbjct: 231 MINFGEYGTITSALIMRDADGK-SRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKA 289
Query: 279 VDRTE 283
++E
Sbjct: 290 QKKSE 294
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 4/187 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E S+ + +YV NL S EL+ F +GT+ S + R+ + G SR G++ +
Sbjct: 205 ENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALIMRDAD-GKSRCFGFVNFEN 263
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+ A A+ L+G +E V + + R + + K + P LY+ N
Sbjct: 264 PDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKN 323
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF 268
L + E L+ F +GT+ S +V+ D G +R GF++FS+ E AL +NG F
Sbjct: 324 LDDTISDEKLKEMFADYGTITSCKVMRDPTG-ISRGSGFVAFSTPEEATRALGEMNGKMF 382
Query: 269 RGRTIIV 275
G+ + V
Sbjct: 383 AGKPLYV 389
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + LY+ NL + +L EMF +GT+ S +V R+P TGISRG G++
Sbjct: 304 EQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDP-TGISRGSGFV 362
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G G+ + V + R +A S
Sbjct: 363 AFSTPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFS 407
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L V L + F + G VVS RV D + + +G+++FS+ + AL L
Sbjct: 37 LYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARALDVL 96
Query: 264 NGTDFRGRTI 273
N T R+I
Sbjct: 97 NFTPLNNRSI 106
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 99/184 (53%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL R+ D L + F FG +LS +V+ + +G S+G G++ + SA+ AI L
Sbjct: 121 IFIKNLDRAIDHKALHDTFSTFGNILSCKVATD-SSGQSKGYGFVQFDNEESAQKAIEKL 179
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F + ++V NLS + ++L+N
Sbjct: 180 NGMLLNDKQVYVGPFLRKQERESAAD------KAKF-----NNVFVKNLSESTTDDELKN 228
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTIIVREGV 279
FG FGT+ SA V+ D G+ ++ FGF++F + DA R A +LNG +F + V +
Sbjct: 229 TFGEFGTITSAVVMRDGDGK-SKCFGFVNFENADDAAR-AVEALNGKNFDDKEWYVGKAQ 286
Query: 280 DRTE 283
++E
Sbjct: 287 KKSE 290
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 6/178 (3%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E +A+ ++V NL S EL F FGT+ S V R+ + G S+ G++ +
Sbjct: 201 ESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGD-GKSKCFGFVNFEN 259
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVG 208
+ A A+ AL+G + +E V + + R + K Y+ + LYV
Sbjct: 260 ADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGAN-LYVK 318
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD-AALSLNG 265
NL ++ E L+ F FGT+ S +V+ D G +R GF++FS+ E A L +NG
Sbjct: 319 NLDDSIGDEKLKELFSPFGTITSCKVMRDPNG-LSRGSGFVAFSTPEEASRALLEMNG 375
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LYV NL S +L E+F PFGT+ S +V R+P G+SRG G++
Sbjct: 300 EQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDP-NGLSRGSGFV 358
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFS 176
+ A A++ ++G V + + V +
Sbjct: 359 AFSTPEEASRALLEMNGKMVVSKPLYVTLA 388
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G+++FS+ +DAA +L+
Sbjct: 33 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSN--PQDAARALD 90
Query: 265 GTDF 268
+F
Sbjct: 91 VLNF 94
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L E+F FG +LSV+V R+ +G SRG G++ + A+ A++ +
Sbjct: 193 IYVKNLQADVDEQGLQELFSQFGKMLSVKVMRD-SSGHSRGFGFVNFETHEEAQKAVVHM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRMNRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEASIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R FGF+ F + +A + A ++NG + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 18/145 (12%)
Query: 48 SRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVG--------------GNEVDD--DSSVE 91
S H GF V EEA +NGK+ G NE+ + +
Sbjct: 226 SSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ 285
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+ +R + LYV NL S D +L + F P+G + S +V E G S+G G++ S
Sbjct: 286 DRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMT--EGGHSKGFGFVCFSSP 343
Query: 152 NSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 344 EEATKAVTEMNGRIVGTKPLYVALA 368
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV NL V E+ R
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNLDTEVTNEEFRE 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
FG++G + SA + HD + +R FGF++F AA+ LN +F+G+ + V
Sbjct: 255 LFGKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQK 314
Query: 281 RTE 283
+ E
Sbjct: 315 KHE 317
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 19/182 (10%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV NL E E+F
Sbjct: 207 LLNEKKVFVGHHIAKKDR--------QSKFEE--MKANFTNVYVKNLDTEVTNEEFRELF 256
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-----RF 175
+G + S ++ + ETG SRG G++ SA A+ L+ + G+++ V +
Sbjct: 257 GKYGDITSASITHDSETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKH 316
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
+ R ++ A + +K Y+ + LYV NL+ + E LR+ F FG + SARV+
Sbjct: 317 EREEELRKQHEAARV---EKASKYQGVN-LYVKNLTDDIDDEKLRDLFIGFGNITSARVM 372
Query: 236 HD 237
D
Sbjct: 373 RD 374
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 28/217 (12%)
Query: 69 VEDEING---KDNVGGNEVDDDSSVEEPRSRA------RPCELYVCNLPRSFDISELLEM 119
VE NG NV + D S E P S A LYV L S + L E+
Sbjct: 17 VESSTNGTTVNTNVANDAAGDGS--ETPNSAAPSTTQPHSASLYVGELDSSVTEAMLFEL 74
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F G V S+ V R+ T S G Y+ + + A+ L+ + + G+ R+ +S
Sbjct: 75 FSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRD 134
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
+ + + +++ NL A+ + L + F FG ++S +V D
Sbjct: 135 PALRKTGQG---------------NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF 179
Query: 240 GQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
G ++ +GF+ + +++A +A +NG + + V
Sbjct: 180 G-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 215
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 97/184 (52%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +S D L E F GT++S +V+ + G SRG G++ + +SAKNAI L
Sbjct: 131 LFVKNLDKSVDNKTLHETFSGCGTIVSCKVAAD-HMGQSRGYGFVQFDTEDSAKNAIEKL 189
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F +YV NLS ++L+
Sbjct: 190 NGKVLNDKQIFVGPFLRKEERESAAD------KMKFT-----NVYVKNLSEVTTDDELKT 238
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIVREGV 279
FG++G++ SA V+ D G+ +R FGF++F + DA R A +LNG F + V +
Sbjct: 239 TFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAAR-AVEALNGKKFDDKEWYVGKAQ 296
Query: 280 DRTE 283
++E
Sbjct: 297 KKSE 300
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 17/177 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C LYV +L + S+L + F V+SV V R+ T S G GY+ + A+ A+
Sbjct: 41 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQ 100
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ S + G+ +R+ +S +S R+ L+V NL +V + L
Sbjct: 101 KLNYSTLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTL 145
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F GT+VS +V D GQ +R +GF+ F + D+ ++A LNG + I V
Sbjct: 146 HETFSGCGTIVSCKVAADHMGQ-SRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 201
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL EL F +G++ S V R+ + G SR G++ + A A+ AL
Sbjct: 222 VYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 280
Query: 162 DGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +E V + + R +R E S F LYV NL V E
Sbjct: 281 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKF---DGLNLYVKNLDDTVTDE 337
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
LR F FGT+ S +V+ D G T++ GF++FS+ +E L+ +NG G+ + V
Sbjct: 338 KLRELFAEFGTITSCKVMRDPSG-TSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYV 395
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + +L E+F FGT+ S +V R+P +G S+G G++ + + A + +
Sbjct: 325 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 383
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+G VGG+ + V + R +A S + F+
Sbjct: 384 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFI 420
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 93/189 (49%), Gaps = 19/189 (10%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D++ + P ++A+ L V LP++ L ++F FG VLS ++ ++ +GIS G G
Sbjct: 10 DENPGPQNPETKAK-TNLIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYG 68
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
++ GS A++AI ++G+ + + ++V ++ + +NA
Sbjct: 69 FVNYGSAEEAEHAIQKMNGTTLESKTLKVSYARPSSVAIKNAN----------------- 111
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+YV NL + +L F +GT+++++VL D R GF+ F + + A+ +L
Sbjct: 112 VYVANLPPQLSLTELDALFQPYGTIITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAAL 171
Query: 264 NGTDFRGRT 272
NG G T
Sbjct: 172 NGKQLVGGT 180
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 95 SRARP-------CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S ARP +YV NLP ++EL +F+P+GT+++ +V + +TG RG G++
Sbjct: 98 SYARPSSVAIKNANVYVANLPPQLSLTELDALFQPYGTIITSKVLTDEDTGAGRGVGFVR 157
Query: 148 MGSINSAKNAIIALDGSD-VGGRE-MRVRFS 176
A+ AI AL+G VGG + + V+F+
Sbjct: 158 FDKYTQAEVAIAALNGKQLVGGTQPLLVKFA 188
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 32 LPTLINFQYPKLSSCWSRSHP--AGF--RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDD 87
+PT+ N +Y +SS + P AG + +A + V + N GGN
Sbjct: 246 IPTVSNMRYNPVSSLPTAGLPTAAGMVNPAAMAALTGMTTGVPNLANLAPVAGGN----G 301
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S++ P + C ++V NLP + L ++F PFG + SV V R+ ++G+ + G++
Sbjct: 302 STMTSPGDPSY-C-VFVYNLPETCQDFLLYQLFSPFGAITSVNVIRDLKSGLCKRYGFVN 359
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRF 175
M S A +AI+ L+G G+ ++V F
Sbjct: 360 MKSYEDACSAIMTLNGYVHDGKTLQVSF 387
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 97/185 (52%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL ++ D L + F FG +LS +++ + +G+S+G G++ S SA+NAI
Sbjct: 121 ANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATD-ASGLSKGYGFVQFDSEESAQNAID 179
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R ++ E +S K F + +YV NLS + E+L
Sbjct: 180 KLNGMLINDKQVYVGHFL----RKQDRENALS--KTKF-----NNVYVKNLSESTTDEEL 228
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
FG +GT+ SA ++ D G+ +R FGF++F + D A LNG + V +
Sbjct: 229 MKFFGEYGTITSAVIMRDADGK-SRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKA 287
Query: 279 VDRTE 283
++E
Sbjct: 288 QKKSE 292
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E S+ + +YV NL S EL++ F +GT+ S + R+ + G SR G++ +
Sbjct: 203 ENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDAD-GKSRCFGFVNFEN 261
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----L 205
+ A A+ L+G V +E V + + R + + + + ES K L
Sbjct: 262 PDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRF----EQSIKESADKYQGVNL 317
Query: 206 YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN 264
Y+ NL + E L+ F +GT+ S +V+ D G R GF++FS+ E AL +N
Sbjct: 318 YLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTG-IGRGSGFVAFSTPEEASRALGEMN 376
Query: 265 GTDFRGRTIIV 275
G G+ + V
Sbjct: 377 GKMIAGKPLYV 387
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL + +L EMF +GT+ S +V R+P TGI RG G++
Sbjct: 302 EQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDP-TGIGRGSGFV 360
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G + G+ + V + R +A S
Sbjct: 361 AFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFS 405
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 93/177 (52%), Gaps = 9/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D ++ E+ G ++S++V +PE G S+G G+++ + A+ A+ L
Sbjct: 196 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAVNVL 254
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++GGR + + R +A I + +I ++ + LY+ NL + E L
Sbjct: 255 NGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVN-LYIKNLDDPIDDERL 313
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R F +GT+ SA+V+ D KG ++ FGF+ FSS E A+ T+ GR +I +
Sbjct: 314 REEFSPYGTISSAKVMKDDKG-NSKGFGFVCFSSPEEATKAV----TEMNGRILISK 365
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G+VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDTM 74
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR R+ + + R+ S IF+ NL ++ + L +
Sbjct: 75 NFDPIKGRPCRIMW------QQRDPSLRKSGVGNIFIK---------NLDKSIDNKSLYD 119
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S ++ D G + +GF+ F + DA +A ++G + + V +
Sbjct: 120 TFSAFGNILSCKIAQDELG-NPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMS 178
Query: 281 RTE 283
+ E
Sbjct: 179 KKE 181
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 19/127 (14%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEV-------------DDDSSVEEPR----SR 96
GF V EEA + +NGK+ +GG + + + +E+ R +R
Sbjct: 235 GFGFVSFETPEEAEEAVNVLNGKE-IGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINR 293
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
+ LY+ NL D L E F P+GT+ S +V ++ + G S+G G++ S A
Sbjct: 294 FQGVNLYIKNLDDPIDDERLREEFSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATK 352
Query: 157 AIIALDG 163
A+ ++G
Sbjct: 353 AVTEMNG 359
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 13/227 (5%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEING-----KDNVGGNEVDDDSSVEEPRSRARP-CEL 102
+ H G+ V +E A D++NG K G + +E +A+ +
Sbjct: 126 KGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNV 185
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
Y+ N FD +L E F+P+G + S +V + + G S+G G++ + +A+ A+ AL+
Sbjct: 186 YIKNFTDEFDDEKLKENFEPYGKITSYKVM-SKDDGKSKGFGFVAYETTEAAEAAVQALN 244
Query: 163 GSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPEDL 219
G D+G G+ + V + R + + KK +ES LYV NL ++ E L
Sbjct: 245 GKDMGEGKTLYVARAQKKAERQQELKRKFEELKKK-RHESVFGVNLYVKNLDDSIDDERL 303
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
R F +GT+ SA+V+ D +G+ ++ FGF+ F S E A++ LNG
Sbjct: 304 RKEFSLYGTITSAKVMTDEEGR-SKGFGFVCFISPNEATCAVTELNG 349
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVATDEKGH-SKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTD-EEGRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 92/166 (55%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +L + + +L+E+FKPFGT+L+V V R+ T S G GY+ + +SA+ AI ++
Sbjct: 27 IYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERAIESM 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V + L +
Sbjct: 87 NFRRVGDKCVRLMW------QQRDPS---------LRYSGNGNVFVKNLEKDVDSKSLHD 131
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
F +FG+++S +V+ D +G+ +R +GF+ F + + +DA + +NG
Sbjct: 132 IFTKFGSILSCKVMEDEEGK-SRGYGFVHFKDEISAKDAIVKMNGA 176
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D L ++F FG++LS +V + E G SRG G++ SAK+AI+ +
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMED-EEGKSRGYGFVHFKDEISAKDAIVKM 173
Query: 162 DGS-DVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G+ D + + + + R AL++ + +Y+ + V E +
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVA---------NFTNVYIKQVLPTVNKEVIE 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS------LNGTDFRGRTII 274
N F +FG + SA D+ G RVF F +F + A+ ++G G +
Sbjct: 225 NFFAKFGGITSAAACKDKSG---RVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLY 281
Query: 275 VREGVDRTE 283
V+ R+E
Sbjct: 282 VQRAQPRSE 290
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 98/235 (41%), Gaps = 39/235 (16%)
Query: 67 VVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPR-------------SFDI 113
V +DEI+ KD + D + E+ ++ LYV N R + I
Sbjct: 158 VHFKDEISAKDAIVKMNGAADHASEDKKA------LYVANFIRRNARLAALVANFTNVYI 211
Query: 114 SELL---------EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII--ALD 162
++L F FG + S ++ + C + A A+ +D
Sbjct: 212 KQVLPTVNKEVIENFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHID 271
Query: 163 GSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRN 221
G G ++ V+ ++ R +E LI+ +K ++S + LYV N DL
Sbjct: 272 GITAPGEKLYVQ-----RAQPR-SERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLE 325
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +G V S RV+ G +R FGF+SFS+ E +AAL +NG G+ +IV
Sbjct: 326 LFKEYGDVKSCRVMMSESG-ASRGFGFVSFSNADEANAALREMNGRMLNGKPLIV 379
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F ++LLE+FK +G V S V + E+G SRG G+++ + + A A+ +
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGDVKSCRVMMS-ESGASRGFGFVSFSNADEANAALREM 367
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 368 NGRMLNGKPLIVNIAQRRDQR 388
>gi|72387127|ref|XP_843988.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175978|gb|AAX70101.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|70800520|gb|AAZ10429.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 377
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++CNL + D + L ++F P+G +LS V RN TG S G ++ + A+ A++
Sbjct: 27 LFMCNLSAAVDEAVLKQIFSPYGEILSAAVMRNIHTGDSLGTAFVRFATTEQARAALVGC 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G V GR + V+++ + T EA KKI KL++ N+ V PED++
Sbjct: 87 HGRVVCGRVLSVQWAKRQHDGTPVGEAR----KKIV------KLFIRNIPLDVGPEDVQR 136
Query: 222 HFGRFGTVVSARVLHDRKGQT--------TRVFGFISFSSDAERDAA 260
F RFGTV S + D T R F++F+ D A
Sbjct: 137 LFERFGTVESVSLHKDTAAATPTTDNSRPQRRIAFVTFTESGVADRA 183
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L E F PFG +LS +V + E SRG G++ ++A AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEG--SRGYGFVHYQDQSAADRAIEEM 157
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R+ V +D ++ EA + F +Y+ NL + E L+N
Sbjct: 158 NGKLL--RDCTV--FVDRFKSRKDREAELRSKTSEFT-----NVYIKNLGDNMDDEGLKN 208
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G +S +V+ D G++ + FGF+SF + +A R+A +NG D G+TI V
Sbjct: 209 IFSKYGQTLSVKVMKDDNGKS-KGFGFVSFYNHEAARNAVEEMNGQDINGQTIFVGRAQK 267
Query: 281 RTE 283
+ E
Sbjct: 268 KVE 270
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E R++ E +Y+ NL + D L +F +G LSV+V ++ + G S+G G+++
Sbjct: 179 EAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKD-DNGKSKGFGFVSF 237
Query: 149 GSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ +A+NA+ ++G D+ G+ + V R + + E K+ KLY+
Sbjct: 238 YNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAKLYI 297
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
NL + E LR F FG++ +V+ + GQ ++ FG I F S
Sbjct: 298 KNLDETIDDETLRREFSSFGSICRVKVMQE-AGQ-SKGFGLICFFS 341
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ + S G Y+ ++ A
Sbjct: 5 AKYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALDTMNFDLIQGKSIRLMWS------QRDAYLRKSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G +R +GF+ + + D A+ +NG R T+
Sbjct: 110 DNKTLYEHFSPFGKILSSKVMSDEEG--SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTV 167
Query: 274 IV 275
V
Sbjct: 168 FV 169
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R R+ P F +YV NL + ++LR
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRK 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGVD 280
FG+FG + SA V+ D+ G +R FGF++F ++A A +NG + V
Sbjct: 248 TFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 281 RTE 283
++E
Sbjct: 307 KSE 309
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP+ EL + F FG + S V R+ ++G SR G++ +A +A+ +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPEDL 219
+G +G + V + + R ++I +E LY+ NL +V E L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFE-QERINRFEKSQGANLYLKNLDDSVDDEKL 348
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ F +G V S++V+ + +G +R FGF+++S+ E ALS +NG
Sbjct: 349 KEMFSEYGNVTSSKVMLNPQG-LSRGFGFVAYSNPEEALRALSEMNG 394
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY +L + L ++FK V+SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R +R+ S R+ +S IF + NL ++ + L
Sbjct: 110 NYTPLFERPIRIMLS------NRDPSTRLSGKGNIF---------IKNLDASIDNKALFE 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FGT++S +V D G+ ++ +GF+ F + AA+ LNG + + V +
Sbjct: 155 TFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 281 RTE 283
R E
Sbjct: 214 RQE 216
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GLSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++G +G + + + + R + +AL S
Sbjct: 387 RALSEMNGKMIGKKPLYIALAQRKEDRRAHLQALFS 422
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R R+ P F +YV NL + ++LR
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRK 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGVD 280
FG+FG + SA V+ D+ G +R FGF++F ++A A +NG + V
Sbjct: 248 TFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 281 RTE 283
++E
Sbjct: 307 KSE 309
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +YV NLP+ EL + F FG + S V R+ ++G SR G++ +A +A
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASA 285
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVK 215
+ ++G +G + V + + R ++I +E LY+ NL +V
Sbjct: 286 VEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE-QERINRFEKSQGANLYLKNLDDSVD 344
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
E L+ F +G V S++V+ + +G +R FGF+++S+ E ALS +NG
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEMNG 394
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY +L + L ++FK V+SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R +R+ S R+ +S IF + NL ++ + L
Sbjct: 110 NYTPLFDRPIRIMLS------NRDPSTRLSGKGNIF---------IKNLDASIDNKALFE 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FGT++S +V D G+ ++ +GF+ F + AA+ LNG + + V +
Sbjct: 155 TFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 281 RTE 283
R E
Sbjct: 214 RQE 216
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++G +G + + + + R + +AL S
Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 15/175 (8%)
Query: 92 EPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+P SR +++ NL +S D L + F FG +LS +++ +P +G SRG G++
Sbjct: 114 DPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEK 172
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
SA++AI L+G + +++ V + R ++ E + S K +YV NL
Sbjct: 173 DESAQSAIDKLNGMLINDKKVFVGPFV----RKQDRENVSSNIK-------FSNVYVKNL 221
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLN 264
S V ++L+ FG++GT+ SA V+ D G+ +R FGF++F ++DA A LN
Sbjct: 222 SDTVTDDELKEMFGKYGTITSAVVMRDSDGK-SRCFGFVNFENADAAAQAVQELN 275
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D + ++E RS+ LY+ NLP EL E+F FG + S V + E G RG G
Sbjct: 252 DRQAKIDEVRSQF--TNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSD-EHGKHRGFG 308
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-RNAEALISPPKKIFVYESPH 203
++ + SA A+ AL D G V + RT R+AE + + YE+
Sbjct: 309 FVNYENHESASKAVDALHDKDYKGN---VLYVARAQKRTERDAE--LKKAHEQQKYETTL 363
Query: 204 K-----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
K LYV NL E L+N F FGT+ S +V+ D KG T++ FGF+ FSS E
Sbjct: 364 KYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKG-TSKGFGFVCFSSPDEAT 422
Query: 259 AALS-LNGTDFRGRTIIV 275
A++ +NG + + V
Sbjct: 423 KAVAEMNGKMLGSKPLYV 440
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 17/181 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + A+ A+ L
Sbjct: 86 LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 145
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + + R+ +S S + + I ++ NL + + L +
Sbjct: 146 NYSLIKNKACRIMWSQRDPSLRKTGQGNI---------------FIKNLDETIDNKALHD 190
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ + + +AA+ +NG + + V V
Sbjct: 191 TFAAFGDILSCKVATDEHG-ASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVP 249
Query: 281 R 281
R
Sbjct: 250 R 250
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 6/174 (3%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A+ LYV NL L E F FG ++S+ + ++ E G S+G G++ S +
Sbjct: 187 PDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPD 245
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ A+ A+DGS G + + V + R + L + +YV N+
Sbjct: 246 DARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKG---LKHMGSNIYVKNIDT 302
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+V E+LR+HF G V+SA+V+ D KG T++ FGF+ FS+ E ++S NG
Sbjct: 303 SVGDEELRDHFSACGEVLSAKVMRDDKG-TSKGFGFVCFSTVVEAFKSMSCFNG 355
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 14/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D L ++F+ +G +LS +++R+ E G S+G GY+ S SA AI +
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+GS V +++ V I R +E + F LYV NL V + L
Sbjct: 164 NGSTVRDKQIYVGKFI------RKSERSLPDLDAKFT-----NLYVKNLDPVVTEKHLGE 212
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG +VS + D GQ ++ FGF+++ S D R A +++G+ F + + V
Sbjct: 213 KFSSFGKIVSLAIKKDENGQ-SKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQK 271
Query: 281 RTE 283
+ E
Sbjct: 272 KVE 274
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L ++L + F F T++S V ++ TG S GY+ + S A AI
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ +RV + +R+A+A S +F V NL+ ++ L +
Sbjct: 77 NHSSLNGKVIRVMW------LSRDADARKSGKGNVF---------VKNLAASIDNVGLHD 121
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F ++G ++S+++ G+ ++ FG+I F S+ + A+ +NG+ R + I V + +
Sbjct: 122 LFQKYGNILSSKIARSEDGK-SKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIR 180
Query: 281 RTE 283
++E
Sbjct: 181 KSE 183
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 151 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHV 209
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ V ++ R
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNINHEVTDDEFRE 260
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG V S+ + D++G+ TR FGF++F++ +A A LNG DFRG+ + V
Sbjct: 261 LFEKFGEVTSSSLARDQEGK-TRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQK 319
Query: 281 RTE 283
+ E
Sbjct: 320 KHE 322
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ E E+F
Sbjct: 213 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNVYVKNINHEVTDDEFRELF 262
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ FG V S ++R+ E G +RG G++ + +A A+ L+G D G+++ V + +
Sbjct: 263 EKFGEVTSSSLARDQE-GKTRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKH 321
Query: 181 SRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
R R+ EA + +K Y+ + LY+ NL V E LR F +G + SA+V+
Sbjct: 322 EREEELRRSYEA--ARLEKANKYQGVN-LYIKNLGDDVDDEKLRAMFSEYGPITSAKVMR 378
Query: 237 D 237
D
Sbjct: 379 D 379
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G+V S+ V R+ T S G Y+ + + A+ L
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + + GR R+ +S D R A +++ NL A+ + L
Sbjct: 123 NYTLIKGRPCRIMWSQRDPALRKTGA----------------GNIFIKNLDAAIDNKALH 166
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
+ F FG ++S +V D G ++ +GF+ + +D A A +NG + + V
Sbjct: 167 DTFAAFGNILSCKVAQDEHG-NSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 221
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R R+ P F +YV NL + ++LR
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRK 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGVD 280
FG+FG + SA V+ D+ G +R FGF++F ++A A +NG + V
Sbjct: 248 TFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 281 RTE 283
++E
Sbjct: 307 KSE 309
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +YV NLP+ EL + F FG + S V R+ ++G SR G++ +A +A
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASA 285
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVK 215
+ ++G +G + V + + R ++I +E LY+ NL +V
Sbjct: 286 VEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE-QERINRFEKSQGANLYLKNLDDSVD 344
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
E L+ F +G V S++V+ + +G +R FGF+++S+ E ALS +NG
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEMNG 394
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY +L + L ++FK V+SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R +R+ S R+ +S IF + NL ++ + L
Sbjct: 110 NYTPLFDRPIRIMLS------NRDPSTRLSGKGNIF---------IKNLDASIDNKALFE 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FGT++S +V D G+ ++ +GF+ F + AA+ LNG + + V +
Sbjct: 155 TFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 281 RTE 283
R E
Sbjct: 214 RQE 216
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFS 176
A+ ++G +G + + + +
Sbjct: 387 RALSEMNGKMIGRKPLYIALA 407
>gi|223942613|gb|ACN25390.1| unknown [Zea mays]
Length = 164
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 119 MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
MF GTV EV + T SR G++TM + A A+ AL+G++VG R+++V +
Sbjct: 1 MFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEALNGTEVGDRKIKVNVT-- 58
Query: 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR 238
S N + P+ +FV +S +K+YVGNL+ V E L+N F G ++SA V H
Sbjct: 59 -ESFLPNIDRSAPEPEALFV-DSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIP 116
Query: 239 KGQTTRVFGFISFSSDAERDAALS 262
++ +GF++FSS+ E +AA++
Sbjct: 117 GTSKSKGYGFVTFSSEEEVEAAVA 140
>gi|125549538|gb|EAY95360.1| hypothetical protein OsI_17193 [Oryza sativa Indica Group]
Length = 290
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+P SF E+ ++F G V VEV + + G +G ++TM + A A+
Sbjct: 81 KLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKG-KDGKKKGFAFVTMATAEEAAAAVEK 139
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ DV GR +RV FS +PP + E HKLYV NL W + +++
Sbjct: 140 LNSLDVMGRTIRVEFSKSFRK--------PAPPPPGTILER-HKLYVSNLPWKARAPNMK 190
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
+F +SA+V+ D + +GF+SF + E +AAL+ L+G + GR + +R
Sbjct: 191 EFCSKFNP-LSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLR 246
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 101 ELYVCNLP---RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+LYV NLP R+ ++ E F P LS +V + +G S G G+++ G+ A+ A
Sbjct: 174 KLYVSNLPWKARAPNMKEFCSKFNP----LSAKVVFDSPSGKSAGYGFVSFGTKEEAEAA 229
Query: 158 IIALDGSDVGGREMRVRF--SIDMNSRTRNAEALI 190
+ LDG ++ GR +R+R+ S+D + + A+ I
Sbjct: 230 LTELDGKELMGRPVRLRWRQSVDDSDDSVKADGEI 264
>gi|261327115|emb|CBH10091.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 377
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++CNL + D + L ++F P+G +LS V RN TG S G ++ + A+ A++
Sbjct: 27 LFMCNLSAAVDEAVLKQIFSPYGEILSAAVMRNIHTGDSLGTAFVRFATTEQARAALVGC 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G V GR + V+++ + T EA KKI KL++ N+ V PED++
Sbjct: 87 HGRVVCGRVLSVQWAKRQHDGTPVGEAR----KKIV------KLFIRNIPLDVGPEDVQR 136
Query: 222 HFGRFGTVVSARVLHDRKGQT--------TRVFGFISFSSDAERDAA 260
F RFGTV S + D T R F++F+ D A
Sbjct: 137 LFERFGTVESVSLHKDTAAATPTTDNSRPQRRIAFVTFTESGVADRA 183
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 94/178 (52%), Gaps = 9/178 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D +L EMF+ +G + S V + +TG SRG G+++ + ++A+ A+ L
Sbjct: 194 VYVKNFGEELDDGKLKEMFEVYGKITSARVMTD-QTGKSRGFGFVSFENPDNAEQAVKEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+ ++G G+++ V + R + + K ++ Y+ + LYV NL + E
Sbjct: 253 NDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVN-LYVKNLDDVIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F +GT+ SA+V+ D G ++ FGF+ FSS E A+ T+ GR I+ +
Sbjct: 312 LRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAV----TEMNGRIIVQK 365
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S L E F G VLS+ V R+ + S G Y+ A+ A+ +
Sbjct: 13 LYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + R MR+ +S R+ S +F+ NL + + + +
Sbjct: 73 NFEPLKNRPMRIMWS------QRDPSLRKSGVGNVFIK---------NLHKDIDNKAIFD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S RV D +G +R +GF+ F + +A +A +NG + + V + V
Sbjct: 118 TFSAFGNILSCRVATDEQG-NSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVP 176
Query: 281 RTE 283
R+E
Sbjct: 177 RSE 179
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E +R + LYV NL D L F P+GT+ S +V + S+G G++ S
Sbjct: 288 ERMTRYQGVNLYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSP 347
Query: 152 NSAKNAIIALDG 163
A A+ ++G
Sbjct: 348 EEATKAVTEMNG 359
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R R+ P F +YV NL + ++LR
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRK 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGVD 280
FG+FG + SA V+ D+ G +R FGF++F ++A A +NG + V
Sbjct: 248 TFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 281 RTE 283
++E
Sbjct: 307 KSE 309
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +YV NLP+ EL + F FG + S V R+ ++G SR G++ +A +A
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASA 285
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVK 215
+ ++G +G + V + + R ++I +E LY+ NL +V
Sbjct: 286 VEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE-QERINRFEKSQGANLYLKNLDDSVD 344
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
E L+ F +G V S++V+ + +G +R FGF+++S+ E ALS +NG
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEMNG 394
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY +L + L ++FK V+SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R +R+ S R+ +S IF + NL ++ + L
Sbjct: 110 NYTPLFDRPIRIMLS------NRDPSTRLSGKGNIF---------IKNLDASIDNKALFE 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FGT++S +V D G+ ++ +GF+ F + AA+ LNG + + V +
Sbjct: 155 TFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 281 RTE 283
R E
Sbjct: 214 RQE 216
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++G +G + + + + R + +AL S
Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G V GR E++ RF R + + LY
Sbjct: 252 NGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ E LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR I
Sbjct: 352 EMNGRII 358
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNVF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 NRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G +G + + V +
Sbjct: 347 TKAVTEMNGRIIGTKPLYVALA 368
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 10/179 (5%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVG 208
+AK A+ ++G D+ G+ + V + R + + K+ I Y+ KLYV
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGV-KLYVK 298
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
NL + E LRN F FG+++ +V+ ++GQ ++ FGFI FSS DA + A + +NG
Sbjct: 299 NLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQ-SKGFGFICFSSLEDATK-AMIEMNG 354
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 22/184 (11%)
Query: 95 SRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
++ R LYV +L D++E L F G VLS+ + R+ T S G Y+ +
Sbjct: 5 AKYRMASLYVGDLHA--DVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLT 62
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ A+ ++ + G+ +R+ +S R+A S +F + NL
Sbjct: 63 DAQKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDK 107
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
++ + L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 108 SIDNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKSC 165
Query: 272 TIIV 275
+ V
Sbjct: 166 KVFV 169
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 93 PRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
R R R + LYV NL + D +L F FG+++ V+V + + G S+G G++
Sbjct: 283 KRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFS 340
Query: 150 SINSAKNAIIALDGSDVGGR 169
S+ A A+I ++G +G +
Sbjct: 341 SLEDATKAMIEMNGCFLGSK 360
>gi|213515090|ref|NP_001135023.1| cytotoxic granule-associated RNA binding protein 1 [Salmo salar]
gi|209738084|gb|ACI69911.1| Nucleolysin TIA-1 [Salmo salar]
Length = 409
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 24/183 (13%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +LP D + L + F+PFG VLS V R+PE+G+S+G G++ A+ AI +
Sbjct: 117 IYVGDLPHECDDNMLAQAFRPFGEVLSSRVVRDPESGLSKGFGFIVYRHQYEAEEAIQKM 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK----KIFVYESPHK--LYVGNLSWAVK 215
G + + ++V ++ TR ++A S P+ ++ H LYVGNL ++K
Sbjct: 177 HGGTISSKSVKVSWA------TR-SKATTSVPQLNYNDVYQQSGAHNTTLYVGNLPESMK 229
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL---NGTDFRGRT 272
+ L + F +G V+ ++ HD+ F FI D AA S+ NG G
Sbjct: 230 EQFLISFFEPYGAVLDTKIFHDKH------FAFIKM--DTHEAAATSIVKCNGQPVDGCV 281
Query: 273 IIV 275
+ V
Sbjct: 282 MKV 284
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 86/177 (48%), Gaps = 14/177 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPF--GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ N+ + D + L+ + + F G ++ +P C ++T +N+A +A+
Sbjct: 23 LHIGNIHSAVDENVLVSILQQFFPGQGFQCKLFPDPNNSPDLYC-FMTFADVNTATSALS 81
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G +V G++++V ++ + + ++ + + H +YVG+L L
Sbjct: 82 ILNGREVMGKKLKVSWASGGAGQFKQSQ----------ISGTTHSIYVGDLPHECDDNML 131
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F FG V+S+RV+ D + ++ FGFI + E + A+ ++G +++ V
Sbjct: 132 AQAFRPFGEVLSSRVVRDPESGLSKGFGFIVYRHQYEAEEAIQKMHGGTISSKSVKV 188
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+S A LYV NLP S L+ F+P+G VL ++ + + ++ M + +
Sbjct: 211 QSGAHNTTLYVGNLPESMKEQFLISFFEPYGAVLDTKIFHD------KHFAFIKMDTHEA 264
Query: 154 AKNAIIALDGSDVGGREMRVRFSID 178
A +I+ +G V G M+V +S D
Sbjct: 265 AATSIVKCNGQPVDGCVMKVWWSRD 289
>gi|125542191|gb|EAY88330.1| hypothetical protein OsI_09789 [Oryza sativa Indica Group]
Length = 252
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 6/174 (3%)
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
LP + +E+ E+F+ FG + S+++SR P++G RG +++ S N + LDG +
Sbjct: 80 LPYTTTEAEIRELFERFGPLRSLQLSRFPDSGNFRGLAFVSFES-NEVAMKSLELDGFKI 138
Query: 167 GGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGR 225
G R MRV R + S+ + + PKK + YVGNL W V DLR+ F
Sbjct: 139 GNRFMRVERCRLAAGSKRKRTVEFQTDPKKA---DGCLSAYVGNLKWDVTETDLRDFFKS 195
Query: 226 FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279
+ S R +++ +R F + F D + A+ +N ++ RGR I + V
Sbjct: 196 L-KISSIRFAINKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPIKISYAV 248
>gi|58258845|ref|XP_566835.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57222972|gb|AAW41016.1| single-stranded DNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 441
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L F+ G V+S V + ++ SRG GY+ + S+ AI
Sbjct: 195 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLESSAKAI-EK 253
Query: 162 DGSDVGGREMRVRFSID------MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
DGS++ GR +RV ++ R R SPP + L++G+LS++V
Sbjct: 254 DGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDKQSPPAET--------LWIGSLSFSVT 305
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274
+ + FG+ G V S R+ DR + FG++ FSS + AAL ++NG + GR I
Sbjct: 306 EDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAALKAMNGAEIAGRAIR 365
Query: 275 V 275
V
Sbjct: 366 V 366
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 180 NSRTRNAEAL-ISPPKKIFV----YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
N R AE I+P KK E+ ++VG LSW V + L++ F G VVSARV
Sbjct: 165 NGNKRKAEEESIAPAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARV 224
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDR 281
+ DR Q +R FG++ F+ A+ +G++ GR I V R
Sbjct: 225 VFDRDSQKSRGFGYVEFADLESSAKAIEKDGSEIDGRAIRVNYATQR 271
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 99 PCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
P E L++ +L S ++ E F G V SV + + +TG +G GY+ S++ A A
Sbjct: 291 PAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAA 350
Query: 158 IIALDGSDVGGREMRVRFS 176
+ A++G+++ GR +RV F+
Sbjct: 351 LKAMNGAEIAGRAIRVDFA 369
>gi|116180414|ref|XP_001220056.1| hypothetical protein CHGG_00835 [Chaetomium globosum CBS 148.51]
gi|88185132|gb|EAQ92600.1| hypothetical protein CHGG_00835 [Chaetomium globosum CBS 148.51]
Length = 475
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 19/187 (10%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ L+V NL D + L E F+ ++S V + ETG SRG GY+ S +A+ A
Sbjct: 219 KSATLWVGNLGWGVDDNALYEEFQSIEGIVSARVVSDKETGRSRGFGYVDFDSAEAAQKA 278
Query: 158 IIALDGSDVGGREMRVRF----SIDMNSRTRNAE------ALISPPKKIFVYESPHKLYV 207
G+ + GR++R+ F S D R A+ +ISPP L+V
Sbjct: 279 YDEKSGAFLQGRDLRLDFASKPSADSAPNARAADRAKKHGDVISPPSDT--------LFV 330
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
GNL ++ + N+F V S R+ D++ + F +++FSS D + +LNG
Sbjct: 331 GNLPFSADESSVSNYFNEVAQVQSLRIPTDQESGRPKGFAYVTFSSIDDAKKVFEALNGG 390
Query: 267 DFRGRTI 273
D GR +
Sbjct: 391 DLDGRPV 397
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S D S + F V S+ + + E+G +G Y+T SI+ AK AL
Sbjct: 328 LFVGNLPFSADESSVSNYFNEVAQVQSLRIPTDQESGRPKGFAYVTFSSIDDAKKVFEAL 387
Query: 162 DGSDVGGREMRVRFS 176
+G D+ GR +R+ ++
Sbjct: 388 NGGDLDGRPVRLDYA 402
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 12/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N ++ +L E+F FG LSV V ++ E G SRG G++ A+ A+ +
Sbjct: 193 IYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+ + R + ++ + LI +I Y+ + LYV NL ++ E
Sbjct: 252 NGKELNGKVIYVGRAQKRLERQGELKRKFELIKQ-DRIQRYQGVN-LYVKNLDDSIDDER 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F +GT+ SA+V+ D G +R FGF+ FSS E A+ T+ GR + +
Sbjct: 310 LRKEFAPYGTITSAKVMTD--GPQSRGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + N+ ++ + L +
Sbjct: 73 NYDVIKGRPIRIMWS------QRDPGLRKSGVGNIF---------IKNMDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D +G ++ +GF+ F ++ + A+ ++NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDERG--SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR-------- 94
R GF V E+A DE+NGK+ VG + + E R
Sbjct: 227 RGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQD 286
Query: 95 --SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV-SRNPETGISRGCGYLTMGSI 151
R + LYV NL S D L + F P+GT+ S +V + P+ SRG G++ S
Sbjct: 287 RIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGPQ---SRGFGFVCFSSP 343
Query: 152 NSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALA 368
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 96/185 (51%), Gaps = 4/185 (2%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A+ LYV NL L E F FG ++SV ++R+ E G SRG G++ + +
Sbjct: 185 PSPDAKYTNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARD-ECGSSRGFGFVNFENPD 243
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLS 211
A+ A+ ++G+++G + + V + R + +K + + +YV N+
Sbjct: 244 DARWAMERMNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNID 303
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270
V E+LR HF + GT+ SA+++ D KG+ ++ FGF+ FSS E A+ + +G F
Sbjct: 304 DDVTDEELREHFSQCGTITSAKLMKDDKGR-SKGFGFVCFSSSEEASKAVNTFHGYMFHR 362
Query: 271 RTIIV 275
+ + V
Sbjct: 363 KPLYV 367
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L +L++ F F T+ SV V R+ TG S GY+ S A AI
Sbjct: 15 LYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIRAIETK 74
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ MRV +S RN +YV NLS ++ L+
Sbjct: 75 NHTPLNGKLMRVMWSHRDPDARRNGIG---------------NVYVKNLSESIDNVGLQE 119
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
FG FGTV+S +V G+ ++ GF+ F S+ ++A+ LNG+ + I V + V
Sbjct: 120 LFGEFGTVLSCKVATFEDGK-SKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVK 178
Query: 281 RTE 283
+++
Sbjct: 179 KSD 181
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D + ++E RS+ LY+ NLP EL E+F FG + S V + E G RG G
Sbjct: 341 DRQAKIDEVRSQF--TNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSD-EHGKHRGFG 397
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-RNAEALISPPKKIFVYESPH 203
++ + SA A+ AL D G V + RT R+AE + + YE+
Sbjct: 398 FVNYENHESASKAVDALHDKDYKGN---VLYVARAQKRTERDAE--LKKAHEQQKYETTL 452
Query: 204 K-----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
K LYV NL E L+N F FGT+ S +V+ D KG T++ FGF+ FSS E
Sbjct: 453 KYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKG-TSKGFGFVCFSSPDEAT 511
Query: 259 AALS-LNGTDFRGRTIIV 275
A++ +NG + + V
Sbjct: 512 KAVAEMNGKMLGSKPLYV 529
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 17/181 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + A+ A+ L
Sbjct: 175 LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 234
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + + R+ +S S + + +++ NL + + L +
Sbjct: 235 NYSLIKNKACRIMWSQRDPSLRKTGQG---------------NIFIKNLDETIDNKALHD 279
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ + + +AA+ +NG + + V V
Sbjct: 280 TFAAFGDILSCKVATDEHG-ASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVP 338
Query: 281 R 281
R
Sbjct: 339 R 339
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 98/184 (53%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL R+ D L + F FG +LS +V+ + +G S+G G++ + SA+ AI L
Sbjct: 118 IFIKNLDRAIDHKALHDTFSTFGNILSCKVATD-SSGQSKGYGFVQFDNEESAQKAIEKL 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F + ++V NLS + ++L+N
Sbjct: 177 NGMLLNDKQVYVGPFLRKQERESTAD------KAKF-----NNVFVKNLSESTTDDELKN 225
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTIIVREGV 279
FG FGT+ SA V+ D G+ ++ FGF++F + DA R A +LNG F + V +
Sbjct: 226 VFGEFGTITSAVVMRDGDGK-SKCFGFVNFENADDAAR-AVEALNGKKFDDKEWYVGKAQ 283
Query: 280 DRTE 283
++E
Sbjct: 284 KKSE 287
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 6/173 (3%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A+ ++V NL S EL +F FGT+ S V R+ + G S+ G++ + + A
Sbjct: 203 KAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGD-GKSKCFGFVNFENADDAA 261
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVGNLSWA 213
A+ AL+G +E V + + R + K Y+ + LYV NL +
Sbjct: 262 RAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGAN-LYVKNLDDS 320
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
+ + L+ F FGT+ S +V+ D G +R GF++FS+ D A L +NG
Sbjct: 321 LGDDKLKELFSPFGTITSCKVMRDPNG-ISRGSGFVAFSTPDEASRALLEMNG 372
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LYV NL S +L E+F PFGT+ S +V R+P GISRG G++
Sbjct: 297 EQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDP-NGISRGSGFV 355
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFS 176
+ + A A++ ++G V + + V +
Sbjct: 356 AFSTPDEASRALLEMNGKMVVSKPLYVTLA 385
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G+++FS+ +DAA +L+
Sbjct: 30 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSN--PQDAARALD 87
Query: 265 GTDF 268
+F
Sbjct: 88 VLNF 91
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 204 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAANAIKHV 262
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + I R E + K F +YV N+ V E+ R
Sbjct: 263 NGMLLNEKKVYVGYHIPKKDRQSKFEEM----KANFT-----NVYVKNIPAEVTDEEFRE 313
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V S+ + +G+ +R FGF++F++ +A A LNG DFRG+ + V
Sbjct: 314 LFAKYGDVTSSSLARSDEGK-SRGFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQK 372
Query: 281 RTE 283
+ E
Sbjct: 373 KHE 375
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 10/157 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+P E E+F +G V S ++R+ E G SRG G
Sbjct: 282 DRQSKFEE--MKANFTNVYVKNIPAEVTDEEFRELFAKYGDVTSSSLARSDE-GKSRGFG 338
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYE 200
++ + +A A+ L+G D G+E+ V + + R R+ EA +K Y+
Sbjct: 339 FVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSYEAARQ--EKANKYQ 396
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NL V + LR F +G + SA+V+ D
Sbjct: 397 GVN-LYIKNLGDDVDDDKLRQMFSEYGPITSAKVMRD 432
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 20/190 (10%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+S+ P+S A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 104 NSAAPHPQSSA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYV 160
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+ + A+ L+ + + GR R+ +S + + + ++
Sbjct: 161 NYNATADGEKALEDLNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVF 205
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNG 265
+ NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A +A +NG
Sbjct: 206 IKNLDVAIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETDEAAANAIKHVNG 264
Query: 266 TDFRGRTIIV 275
+ + V
Sbjct: 265 MLLNEKKVYV 274
>gi|134106861|ref|XP_777972.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260672|gb|EAL23325.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 444
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L F+ G V+S V + ++ SRG GY+ + S+ AI
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLESSAKAI-EK 256
Query: 162 DGSDVGGREMRVRFSID------MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
DGS++ GR +RV ++ R R SPP + L++G+LS++V
Sbjct: 257 DGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDKQSPPAET--------LWIGSLSFSVT 308
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274
+ + FG+ G V S R+ DR + FG++ FSS + AAL ++NG + GR I
Sbjct: 309 EDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAALKAMNGAEIAGRAIR 368
Query: 275 V 275
V
Sbjct: 369 V 369
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 180 NSRTRNAEAL-ISPPKKIFV----YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
N R AE I+P KK E+ ++VG LSW V + L++ F G VVSARV
Sbjct: 168 NGNKRKAEEESIAPAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARV 227
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDR 281
+ DR Q +R FG++ F+ A+ +G++ GR I V R
Sbjct: 228 VFDRDSQKSRGFGYVEFADLESSAKAIEKDGSEIDGRAIRVNYATQR 274
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 99 PCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
P E L++ +L S ++ E F G V SV + + +TG +G GY+ S++ A A
Sbjct: 294 PAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAA 353
Query: 158 IIALDGSDVGGREMRVRFS 176
+ A++G+++ GR +RV F+
Sbjct: 354 LKAMNGAEIAGRAIRVDFA 372
>gi|121606987|ref|YP_984316.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120595956|gb|ABM39395.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 152
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ EDL+ FG+FG V SA+V+ +R ++ FGF+ +SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMASDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSVVVNE 78
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ M S A+ AI
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMASDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSVVVNEARPMEAR 85
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 6/186 (3%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A+ LY+ NL + L E F FG ++S+ +S++ + G+S+G ++ + +
Sbjct: 184 PGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKD-DNGLSKGFAFVNYENPD 242
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVGNL 210
AK A+ A++G G + + V + R + +K I Y++ + LYV N+
Sbjct: 243 DAKKAMEAMNGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASN-LYVKNI 301
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD-AALSLNGTDFR 269
V ++LR+ F GT+ S +V+ D KG ++ FGF+ FS+ E + A +S NG F
Sbjct: 302 DDDVTDKELRDLFSSCGTITSVKVMRDDKG-ISKGFGFVCFSNPEEANKAVMSFNGCTFH 360
Query: 270 GRTIIV 275
+ + +
Sbjct: 361 RKPLYI 366
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A P +YV +L L F FG++ SV V R+ T S GY+ S A
Sbjct: 9 AVPASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIR 68
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
AI + S + G+ +RV + R+ A S +F V NL+ ++
Sbjct: 69 AIKLRNNSYLNGKVIRVMW------LHRDPNARKSGRGNVF---------VKNLAGSIDN 113
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
L + F ++G ++S++V+ G+ ++ +GF+ F + + A+ LNG+ + I V
Sbjct: 114 AGLHDLFKKYGNILSSKVVMSEDGK-SKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYV 172
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V +D R+
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEM----KANFT-----NIYVKNIDLDVSDDDFRD 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F + G + SA + D +G+ +R FGF+++ AA+ +LN TDFRG+ + V
Sbjct: 248 LFEKHGDITSASIARDDQGK-SRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQK 306
Query: 281 RTE 283
+ E
Sbjct: 307 KHE 309
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 17/192 (8%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P LYV L S + L E+F G V S+ V R+ T S G Y+ S
Sbjct: 41 PAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSE 100
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ A+ L+ + + G+ R+ +S + + + +++ NL
Sbjct: 101 DGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDH 145
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGR 271
A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 146 AIDNKALHDTFAAFGNILSCKVAQDELG-NSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Query: 272 TIIVREGVDRTE 283
+ V + + E
Sbjct: 205 KVFVGHHIPKKE 216
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +YV N+ + ++F+ G + S ++R+ + G SRG G++ +A
Sbjct: 225 KANFTNIYVKNIDLDVSDDDFRDLFEKHGDITSASIARD-DQGKSRGFGFVNYIKHEAAS 283
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ AL+ +D G+++ V + + R + K Y+ + LY+ NL+
Sbjct: 284 AAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVN-LYIKNLNDD 342
Query: 214 VKPEDLRNHFGRFGTVVSARVLHD 237
V E LR+ F FGT+ SA+V+ D
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVMRD 366
>gi|255085602|ref|XP_002505232.1| predicted protein [Micromonas sp. RCC299]
gi|226520501|gb|ACO66490.1| predicted protein [Micromonas sp. RCC299]
Length = 211
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 9/179 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS-RGCGYLTMGSINSAKNAI 158
+LYV +LP + + +LEMFKPFG VL ++V + E +S +G ++ + A A
Sbjct: 33 AKLYVGHLPSTMNAERMLEMFKPFGRVLQIDVIPDRERQLSCKGFAFVLFSTPEEAI-AA 91
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
AL+G V G+ + VR + + A ++P KLYV + + E+
Sbjct: 92 KALNGHVVEGKSIDVRLKAEPRAPREPVNAPVAP------VNDDAKLYVAYMPDHYRAEE 145
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
L+ +G RV+ DR+ +R FGF + + AA+ LNG G+T++VR
Sbjct: 146 LKMLLQPYGLPSDVRVITDRETGRSRGFGFAQMMDEQQAMAAIQGLNGQMLDGKTLVVR 204
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP-----------CEL 102
GF VL EEA+ + +NG V G +D E PR+ P +L
Sbjct: 76 GFAFVLFSTPEEAIAAK-ALNGH-VVEGKSIDVRLKAE-PRAPREPVNAPVAPVNDDAKL 132
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
YV +P + EL + +P+G V V + ETG SRG G+ M A AI L+
Sbjct: 133 YVAYMPDHYRAEELKMLLQPYGLPSDVRVITDRETGRSRGFGFAQMMDEQQAMAAIQGLN 192
Query: 163 GSDVGGREMRVRFS 176
G + G+ + VR +
Sbjct: 193 GQMLDGKTLVVRIA 206
>gi|449443534|ref|XP_004139532.1| PREDICTED: uncharacterized protein LOC101217028 [Cucumis sativus]
gi|449505564|ref|XP_004162509.1| PREDICTED: uncharacterized LOC101217028 [Cucumis sativus]
Length = 477
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 9/189 (4%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +L++ + D L E F+ FG V+ V + R+ TG +RG G++ +A A
Sbjct: 3 PGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAA--AR 60
Query: 159 IALDGSDVGGREMRVRFSI---DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+ L+ + GR + + ++ D N +RN ++ P K++VG L+ V
Sbjct: 61 VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPT----RTKKIFVGGLASTVT 116
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
D + +F +FGT+V V++D Q R FGFI++ S+ + L + G+ + V
Sbjct: 117 ESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEV 176
Query: 276 REGVDRTES 284
+ V + S
Sbjct: 177 KRAVPKESS 185
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 20/180 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAYETTEAAEAAVQAL 243
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPH------KLYVGNLSWA 213
+G D+G E + + + + L K+ F + + H LYV NL
Sbjct: 244 NGKDMG--ESKSLYVARAQKKAERQQEL----KRKFEELKKKRHDSVFGVNLYVKNLDDT 297
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
+ E LR F +GT+ SA+V+ D +G+ ++ FGF+ F S E A+ T+ GR I
Sbjct: 298 IDDERLRKDFSMYGTITSAKVMTDEEGR-SKGFGFVCFISPNEATCAV----TELNGRVI 352
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL + + + +
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKGIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVAIDEKG-NSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDTIDDERLRKDFSMYGTITSAKVMTD-EEGRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRV 173
+G +G + + V
Sbjct: 348 NGRVIGSKPLYV 359
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S +++ ++F GTV VE+ ++ + G S+G ++TM S A+ A+
Sbjct: 74 KLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSKD-GRSKGYAFVTMASGEEAQAAVDK 132
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
D ++ GR +RV + + P E+ H +Y NL+W + LR
Sbjct: 133 FDSYELSGRIIRVELAKRLKKPPSLPPPPGPRPG-----ETRHVIYASNLAWKARSTHLR 187
Query: 221 NHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F F T SARV+ D + +GF+SF + + +AA+S ++G + GR + ++
Sbjct: 188 QVFTENFKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAISTVDGKELMGRPLRLK 245
>gi|405117835|gb|AFR92610.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
grubii H99]
Length = 444
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 16/181 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L F+ G V+S V + ++ SRG GY+ + S+ AI
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLGSSAKAI-EK 256
Query: 162 DGSDVGGREMRVRFSID------MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
DGS++ GR +RV ++ R R SPP + L++G+LS++V
Sbjct: 257 DGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDKQSPPAET--------LWIGSLSFSVT 308
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274
+ + FG+ G V S R+ DR + FG++ FSS + AAL ++NG + GR I
Sbjct: 309 EDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDATAALKAMNGAEIAGRAIR 368
Query: 275 V 275
V
Sbjct: 369 V 369
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E+ ++VG LSW V + L++ F G VVSARV+ DR Q +R FG++ F+
Sbjct: 193 EATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLGSSAK 252
Query: 260 ALSLNGTDFRGRTIIVREGVDR 281
A+ +G++ GR I V R
Sbjct: 253 AIEKDGSEIDGRAIRVNYATQR 274
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 99 PCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
P E L++ +L S ++ E F G V SV + + +TG +G GY+ S++ A A
Sbjct: 294 PAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDATAA 353
Query: 158 IIALDGSDVGGREMRVRFS 176
+ A++G+++ GR +RV F+
Sbjct: 354 LKAMNGAEIAGRAIRVDFA 372
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 8/169 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L E+F FG LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 VYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 162 DGSDVGGREMRV----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V G+ + V +++ N R + + + + LYV NL ++ E
Sbjct: 252 NGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDDSIDNE 311
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 312 RLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 358
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADAELALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RQE 178
>gi|167516158|ref|XP_001742420.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779044|gb|EDQ92658.1| predicted protein [Monosiga brevicollis MX1]
Length = 204
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 90/179 (50%), Gaps = 4/179 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ L LL+ F+ FG V+ V +P TG +RG G++T ++++A
Sbjct: 1 KLFIGGLSPETTHDRLLDYFQVFGDVVDCVVMTDPATGRTRGFGFVTYRD-GRCCDSVLA 59
Query: 161 LDGSDVGGREMRVRFSI---DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
V GRE+ + ++ +M S R++ A + P+ K++VG L E
Sbjct: 60 HRPHVVDGREVDPKRAVPRQEMESSPRSSSATRAKPRSASFTHHVRKVFVGGLPPTATNE 119
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
L +F FG V A ++HD++ +T R FGF++F D +S++ +F G+ + V+
Sbjct: 120 MLHRYFSHFGGVEEAVIIHDKQTRTPRGFGFVTFEDPIIADKVVSVHYHEFYGKMVEVK 178
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 16/178 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAYETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKK-----IFVYESPHKLYVGNLSWAVK 215
+G D+G + + V + R + + KK +F LYV NL +
Sbjct: 244 NGKDMGESKSLYVARAQKKAERQQELKRKFEELKKKRHDSVFGV----NLYVKNLDDTID 299
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
E LR F +GT+ SA+V+ D +G+ ++ FGF+ F S E A+ T+ GR I
Sbjct: 300 DERLRKDFSMYGTITSAKVMTDEEGR-SKGFGFVCFISPNEATCAV----TELNGRVI 352
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL + + + +
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKGIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVAIDEKG-NSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDTIDDERLRKDFSMYGTITSAKVMTD-EEGRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G +G + + V +
Sbjct: 348 NGRVIGSKPLYVALA 362
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ EDL+ FG+FG+V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSVVVNE 78
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG+V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSVVVNEARPMEAR 85
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 12/206 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ F E+ +F+P+G + S+ + ++ E G S+G G
Sbjct: 218 DRESKFEE--MKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAE-GKSKGFG 274
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S +A A+ L+ D+ G+ + V + R + + K+ Y+
Sbjct: 275 FVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGV 334
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 335 N-LFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGK-SKGFGFVCFSSPEEATKAIT 392
Query: 263 -LNGTDFRGRTIIV----REGVDRTE 283
+N F G+ + V R+ V R++
Sbjct: 393 EMNQRMFHGKPLYVALAQRKDVRRSQ 418
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 21/205 (10%)
Query: 81 GNEVDDDS-SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GNE +D + S + P + A LYV L S + + L E+F P G V S+ V R+ T
Sbjct: 33 GNEGEDAADSTQLPDTSA---SLYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKK 89
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
S G Y+ + + AI L+ S + GR R+ +S S RN E I
Sbjct: 90 SLGYAYVNFHKLEDGEKAIDDLNYSLIDGRPCRIMWSQRDPSLRRNGEGNI--------- 140
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERD 258
++ NL A+ + L + F FG ++S +V D +G ++ FGF+ + +++A R
Sbjct: 141 ------FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQG-NSKCFGFVHYETAEAARA 193
Query: 259 AALSLNGTDFRGRTIIVREGVDRTE 283
A ++NG R + V + V + +
Sbjct: 194 AIENVNGMLLNDREVYVGKHVSKKD 218
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 35/191 (18%)
Query: 12 SSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVED 71
+SL + K FGF +NF+ SH A ++V + D++
Sbjct: 258 TSLHLEKDAEGKSKGFGF------VNFE----------SHEAAVKAVEELNDKD------ 295
Query: 72 EINGKDNVGGNEVDDDSSVEEPR-----------SRARPCELYVCNLPRSFDISELLEMF 120
ING++ G +EE + S+ + L+V NL S D +L E F
Sbjct: 296 -INGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEF 354
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
KPFGT+ S V + E G S+G G++ S A AI ++ G+ + V + +
Sbjct: 355 KPFGTITSARVMVD-EHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKD 413
Query: 181 SRTRNAEALIS 191
R E I
Sbjct: 414 VRRSQLEQQIQ 424
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D + L +F FGT+LS +V E G S+G G++ S +SA A AL
Sbjct: 109 LYVKNLDASIDSAGLQSLFSKFGTILSCKVVE--EHGKSKGYGFVQFDSEDSALAARTAL 166
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + +++ V + + RT S + F LYV NLS + + N
Sbjct: 167 HDTMLKEKKLYVSRFVKKSERT----TATSYDELKFT-----NLYVKNLSKDMTQDAFHN 217
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++SA ++ D G+ +R FGF+ F S + A+ +LNG RT+ V
Sbjct: 218 MFSAFGEIISAVIMQDHNGK-SRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVGRAQA 276
Query: 281 RTE 283
+ E
Sbjct: 277 KAE 279
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 86/179 (48%), Gaps = 10/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + MF FG ++S + ++ G SRG G++ S AK A+ AL
Sbjct: 201 LYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQD-HNGKSRGFGFVDFESPEDAKKAVDAL 259
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE----SPHKLYVGNLSWAVKPE 217
+G + E R F ++ + L K IF LYV NL+ + +
Sbjct: 260 NGYQL---ESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDND 316
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
L+ F G +VSA+V+ G +R FGF+ FSS E AL +LNG F+G+++ V
Sbjct: 317 KLQELFSCSGKIVSAKVMRYDNG-ASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYV 374
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 21/193 (10%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+PR R LYV +L L +F G + +V + R TG S GY+
Sbjct: 14 DPRPR---LSLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRP 70
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A A+ L+ + + G+ MR+ + RN A S LYV NL
Sbjct: 71 YDAYKALSNLNHTYLKGKLMRIMWC------QRNPCARKS---------GIGNLYVKNLD 115
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRG 270
++ L++ F +FGT++S +V+ + ++ +GF+ F S D+ A +L+ T +
Sbjct: 116 ASIDSAGLQSLFSKFGTILSCKVVEEHG--KSKGYGFVQFDSEDSALAARTALHDTMLKE 173
Query: 271 RTIIVREGVDRTE 283
+ + V V ++E
Sbjct: 174 KKLYVSRFVKKSE 186
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL D +L E+F G ++S +V R + G SRG G++ S AK A+ AL
Sbjct: 304 LYVKNLALCIDNDKLQELFSCSGKIVSAKVMRY-DNGASRGFGFVCFSSPEEAKKALNAL 362
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
+G+ G+ + V + R + S P+
Sbjct: 363 NGAVFQGKSLYVAMAQCKRDRQLALQTYFSVPQ 395
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 8/178 (4%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S +++ ++F GTV VE+ ++ + G S+G ++TM S A+ A+
Sbjct: 81 KLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSKD-GRSKGYAFVTMASGEEAQAAVDK 139
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
D ++ GR +RV + E+ H +Y NL+W + LR
Sbjct: 140 FDSYELSGRIIRVELAKRFKKPPSPPPPPGPR-----PGETRHVIYASNLAWKARSTHLR 194
Query: 221 NHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F F T SARV+ D + +GF+SF + + +AA+S ++G + GR + ++
Sbjct: 195 QLFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAISTVDGKELMGRPLRLK 252
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V E+ R
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEM----KANFT-----NIYVKNIDLDVSDEEFRE 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F + G + SA + D +G+ +R FGF+++ AA+ +LN TDFRG+ + V
Sbjct: 248 LFEKHGDITSASIARDEQGK-SRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQK 306
Query: 281 RTE 283
+ E
Sbjct: 307 KHE 309
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +YV N+ E E+F+ G + S ++R+ E G SRG G++ +A
Sbjct: 225 KANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARD-EQGKSRGFGFVNYIKHEAAS 283
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ AL+ +D G+++ V + + R + K Y+ + LY+ NL+
Sbjct: 284 AAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVN-LYIKNLNDD 342
Query: 214 VKPEDLRNHFGRFGTVVSARVLHD 237
V E LR+ F FGT+ SA+V+ D
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVMRD 366
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 17/192 (8%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P LYV L S + L E+F G V S+ V R+ T S G Y+ S
Sbjct: 41 PAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSE 100
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ A+ L+ + + G+ R+ +S + + + +++ NL
Sbjct: 101 DGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDH 145
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGR 271
A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 146 AIDNKALHDTFAAFGNILSCKVAQDELG-NSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Query: 272 TIIVREGVDRTE 283
+ V + + E
Sbjct: 205 KVFVGHHIPKKE 216
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 17/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L+E+FKPFGT+L+V V R+ T S G GY+ + +SA A+ AL
Sbjct: 24 LYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAKAMEAL 83
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + MR+ + + AL Y ++V NL V +L
Sbjct: 84 NFKRVGDKCMRIMWQ-------QRDPAL--------RYSGNGNVFVKNLKNEVDSRELGA 128
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNG 265
F +FG ++S +V+ D +G+ +R +GF+ F +D A ++A ++NG
Sbjct: 129 IFKKFGDILSCKVMEDEEGK-SRGYGFVHFKNDNAAKEAIENMNG 172
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 13/168 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D EL +FK FG +LS +V + E G SRG G++ + N+AK AI +
Sbjct: 112 VFVKNLKNEVDSRELGAIFKKFGDILSCKVMED-EEGKSRGYGFVHFKNDNAAKEAIENM 170
Query: 162 DG-SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G D E ++ + N RNA + + +Y+ + V E +
Sbjct: 171 NGDKDHADEEKKMGLYV-ANFIRRNARLAT-------LVANFTNVYIKQVLPTVDKEVIE 222
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDF 268
F RFG + S+ D+ G RVF F +F + A+ + F
Sbjct: 223 KFFSRFGGITSSATCKDKNG---RVFAFCNFEKHEDAVKAIEASHEQF 267
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LYV N E+L F +G + S RV+ D G +R FGF+SF + + +AAL +
Sbjct: 307 LYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANG-NSRGFGFVSFGNADQANAALREM 365
Query: 264 NGTDFRGRTIIV 275
NG G+ +IV
Sbjct: 366 NGRMLNGKPLIV 377
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 94 RSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
R + C+ LYV N F L E+FK +G + S V + G SRG G+++
Sbjct: 294 RQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDA-NGNSRGFGFVSF 352
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
G+ + A A+ ++G + G+ + V + + R
Sbjct: 353 GNADQANAALREMNGRMLNGKPLIVNIAQRRDQR 386
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C ++V L + D L F+ G V+ V + +TG S+G GY++ + +A+ AI
Sbjct: 391 CNIFVGKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAIA 450
Query: 160 ALDGSDVGGREMRVRFSI----DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
++G ++ GR + V + + R + +S K+ L+VGN+S+
Sbjct: 451 EMNGKEIDGRAVNVNAATPKTPNPAGRAKQFGDTVSAESKV--------LFVGNVSFNAN 502
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ L FG G +VS R+ DR+ + FG++ F+S + + A +LNG D GR I
Sbjct: 503 EDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNALNGKDIAGRNI 561
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V N+ SF+ +E L E F G ++SV + + ETG +G GY+ S+ +AK+A
Sbjct: 492 LFVGNV--SFNANEDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFN 549
Query: 160 ALDGSDVGGREMRVRFS 176
AL+G D+ GR +R+ FS
Sbjct: 550 ALNGKDIAGRNIRLDFS 566
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + I R E + K F +YV N++ V E+ R
Sbjct: 213 NGMLLNEKKVYVGYHIPKKDRQSKFEEM----KANFT-----NVYVKNINHEVTEEEFRE 263
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F ++G V S+ + D +G+ +R FGF++F++ A A+ LNG +FRG+ + V
Sbjct: 264 LFAKYGEVTSSSLARDNEGK-SRGFGFVNFTTHASAAKAVEELNGKEFRGQELYVGRAQK 322
Query: 281 RTE 283
+ E
Sbjct: 323 KHE 325
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 83/189 (43%), Gaps = 20/189 (10%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ P+S A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 55 STAPHPQSSA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 111
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S + A+ L+ + + GR R+ +S + + + +++
Sbjct: 112 YNSTQDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 156
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A +NG
Sbjct: 157 KNLDVAIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETDEAAAQAIKHVNGM 215
Query: 267 DFRGRTIIV 275
+ + V
Sbjct: 216 LLNEKKVYV 224
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 10/192 (5%)
Query: 54 GFRSVLAVVDEEAVVVEDEING------KDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
G+ V DE A +NG K VG + D + +A +YV N+
Sbjct: 193 GYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNVYVKNI 252
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
E E+F +G V S ++R+ E G SRG G++ + SA A+ L+G +
Sbjct: 253 NHEVTEEEFRELFAKYGEVTSSSLARDNE-GKSRGFGFVNFTTHASAAKAVEELNGKEFR 311
Query: 168 GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGR 225
G+E+ V + + R + K Y+ + LY+ NL+ V + LR F
Sbjct: 312 GQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN-LYIKNLADDVDDDKLRQMFSE 370
Query: 226 FGTVVSARVLHD 237
FG + SA+V+ D
Sbjct: 371 FGPITSAKVMRD 382
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L E+F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 348 KAVTEMNGRIVGTKPLYVALA 368
>gi|115450405|ref|NP_001048803.1| Os03g0123200 [Oryza sativa Japonica Group]
gi|25446691|gb|AAN74838.1| Unknown protein [Oryza sativa Japonica Group]
gi|108705923|gb|ABF93718.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113547274|dbj|BAF10717.1| Os03g0123200 [Oryza sativa Japonica Group]
gi|125584746|gb|EAZ25410.1| hypothetical protein OsJ_09226 [Oryza sativa Japonica Group]
gi|215694916|dbj|BAG90107.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 6/174 (3%)
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
LP + +E+ E+F+ FG + S+++SR P++G RG +++ S N + LDG +
Sbjct: 80 LPYTTTEAEIRELFERFGPLRSLQLSRFPDSGNFRGLAFVSFES-NEVVMKSLELDGFKI 138
Query: 167 GGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGR 225
G R MRV R + S+ + + PKK + YVGNL W V DLR+ F
Sbjct: 139 GNRFMRVERCRLAAGSKRKRTVEFQTDPKKA---DGCLSAYVGNLKWDVTETDLRDFFKS 195
Query: 226 FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279
+ S R +++ +R F + F D + A+ +N ++ RGR I + V
Sbjct: 196 L-KISSIRFAINKRTGDSRGFCHVDFEDDESLEKAVGMNQSELRGRPIKISYAV 248
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R+
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTEEEFRD 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +FG + SA + D + +R FGF++F+S AA+ +LN DF+G+ + V
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYV 309
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + E ++F+ FG + S ++R+ E+G SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S ++A A+ AL+ D G+++ V + + R + K Y+
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV 340
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ LY+ NLS + E LR F +GT+ SA+V+ D ++T SD+E++A
Sbjct: 341 N-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST---------SDSEKEA 387
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKALHD 161
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G ++ +GF+ + +++A ++A +NG + + V
Sbjct: 162 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 215
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R+
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTEEEFRD 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +FG + SA + D + +R FGF++F+S AA+ +LN DF+G+ + V
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYV 309
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + E ++F+ FG + S ++R+ E+G SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S ++A A+ AL+ D G+++ V + + R + K Y+
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV 340
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ LY+ NLS + E LR F +GT+ SA+V+ D ++T SD+E++A
Sbjct: 341 N-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST---------SDSEKEA 387
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ + + GR R+ +S + + + +++ NL A+ + L
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKAL 159
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
+ F FG ++S +V D G ++ +GF+ + +++A ++A +NG + + V
Sbjct: 160 HDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 215
>gi|398802241|ref|ZP_10561457.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398100710|gb|EJL90943.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 148
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ EDL+ FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSVVVNE 78
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSVVVNEARPMEAR 85
>gi|169773975|ref|XP_001821456.1| ribosome biogenesis (Nop4) [Aspergillus oryzae RIB40]
gi|83769317|dbj|BAE59454.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391869076|gb|EIT78281.1| nucleolar protein fibrillarin NOP77 [Aspergillus oryzae 3.042]
Length = 726
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 19/217 (8%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE 136
D + V ++S ++PR L+V +LP S +L+E F + V + E
Sbjct: 27 DTAKNDTVQEESVSDKPRR-----TLFVRSLPASVTTEKLVEYFSQSYVIKHALVVNDSE 81
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF------SIDMNSRTRNAEALI 190
T S+G G++T ++ AK A+ +GS G++++V + ++D N+ +
Sbjct: 82 TKQSKGYGFVTFADVDDAKAALDEFNGSVFDGKKIKVDYAQPRHRTVDENAGKSVPSSAA 141
Query: 191 SPPKKIFVYE----SPHKLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
KK E P KL V NL W++K P+DL HF FG + + +KG
Sbjct: 142 LEAKKQREQERAATQPPKLIVRNLPWSIKEPDDLAVHFRSFGKIKYVNL--PKKGNKLAG 199
Query: 246 FGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281
FGF+ + AL ++NG + GRT+ V VD+
Sbjct: 200 FGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWAVDK 236
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 71 DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSF-DISELLEMFKPFGTVLSV 129
DE GK ++ E+ R+ +P +L V NLP S + +L F+ FG + V
Sbjct: 129 DENAGKSVPSSAALEAKKQREQERAATQPPKLIVRNLPWSIKEPDDLAVHFRSFGKIKYV 188
Query: 130 EVSRNPETGIS-RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
+ P+ G G G++ + +A+ A+ A++G +V GR + V +++D
Sbjct: 189 NL---PKKGNKLAGFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWAVD 235
>gi|238492008|ref|XP_002377241.1| ribosome biogenesis (Nop4), putative [Aspergillus flavus NRRL3357]
gi|220697654|gb|EED53995.1| ribosome biogenesis (Nop4), putative [Aspergillus flavus NRRL3357]
Length = 729
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 19/217 (8%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE 136
D + V ++S ++PR L+V +LP S +L+E F + V + E
Sbjct: 27 DTAKNDTVQEESVSDKPRR-----TLFVRSLPASVTTEKLVEYFSQSYVIKHALVVNDSE 81
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF------SIDMNSRTRNAEALI 190
T S+G G++T ++ AK A+ +GS G++++V + ++D N+ +
Sbjct: 82 TKQSKGYGFVTFADVDDAKAALDEFNGSVFDGKKIKVDYAQPRHRTVDENAGKSVPSSAA 141
Query: 191 SPPKKIFVYE----SPHKLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
KK E P KL V NL W++K P+DL HF FG + + +KG
Sbjct: 142 LEAKKQREQERAATQPPKLIVRNLPWSIKEPDDLAVHFRSFGKIKYVNL--PKKGNKLAG 199
Query: 246 FGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281
FGF+ + AL ++NG + GRT+ V VD+
Sbjct: 200 FGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWAVDK 236
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 71 DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSF-DISELLEMFKPFGTVLSV 129
DE GK ++ E+ R+ +P +L V NLP S + +L F+ FG + V
Sbjct: 129 DENAGKSVPSSAALEAKKQREQERAATQPPKLIVRNLPWSIKEPDDLAVHFRSFGKIKYV 188
Query: 130 EVSRNPETGIS-RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
+ P+ G G G++ + +A+ A+ A++G +V GR + V +++D
Sbjct: 189 NL---PKKGNKLAGFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWAVD 235
>gi|67528248|ref|XP_661934.1| hypothetical protein AN4330.2 [Aspergillus nidulans FGSC A4]
gi|40741301|gb|EAA60491.1| hypothetical protein AN4330.2 [Aspergillus nidulans FGSC A4]
gi|259482863|tpe|CBF77747.1| TPA: ribosome biogenesis (Nop4), putative (AFU_orthologue;
AFUA_4G06250) [Aspergillus nidulans FGSC A4]
Length = 724
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 20/212 (9%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
N V +D + + PR EL++ +LP S L E F + V +P+T S+
Sbjct: 25 NNVQEDGATQ-PRR-----ELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSK 78
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS------ID--MNSRTRNAEALISPP 193
G G++T + AK A+ L+GS G++++V ++ +D + +AEAL
Sbjct: 79 GYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRHRVVDETVGKSVPSAEALERKK 138
Query: 194 KK--IFVYESPHKLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
++ P KL V NL W++K PEDL HF FG V V +KG FGF+
Sbjct: 139 QREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKV--KYVTLPKKGSQLAGFGFVV 196
Query: 251 FSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281
+ AL ++NG + GRT+ V V++
Sbjct: 197 LRGKKNAEKALEAVNGKEVDGRTLAVDWAVEK 228
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 69 VEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE-LLEMFKPFGTVL 127
V DE GK ++ E+ ++ +P +L V NLP S E L F+ FG V
Sbjct: 119 VVDETVGKSVPSAEALERKKQREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVK 178
Query: 128 SVEVSRNPETGIS-RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
V + P+ G G G++ + +A+ A+ A++G +V GR + V ++++
Sbjct: 179 YVTL---PKKGSQLAGFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWAVE 227
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R+
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTEEEFRD 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +FG + SA + D + +R FGF++F+S AA+ +LN DF+G+ + V
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYV 309
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + E ++F+ FG + S ++R+ E+G SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S ++A A+ AL+ D G+++ V + + R + K Y+
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV 340
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ LY+ NLS + E LR F +GT+ SA+V+ D ++T SD+E++A
Sbjct: 341 N-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST---------SDSEKEA 387
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKALHD 161
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G ++ +GF+ + +++A ++A +NG + + V
Sbjct: 162 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 215
>gi|259482511|tpe|CBF77063.1| TPA: pre-mRNA splicing factor (Prp24), putative (AFU_orthologue;
AFUA_2G01820) [Aspergillus nidulans FGSC A4]
Length = 1290
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V N P + D + + ++F +G ++ + R C YL + +A +A+ AL
Sbjct: 907 LFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFC-YLQFKTSVAAHSAL-AL 964
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VG G + V+ S + RN +YE +++V N++W+ +DL+
Sbjct: 965 DGSAVGNGLHLVVKISDPSRKQDRNGP----------IYEG-REIHVSNVNWSASEDDLK 1013
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
F RFGTV R+ G ++ FG++ FSS E AAL+++ +FRGR + V+
Sbjct: 1014 ELFSRFGTVELVRLPRKVDG-GSKGFGYVVFSSKEEATAALAMHEQEFRGRPLHVK 1068
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V E+ R
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEM----KANFT-----NIYVKNIDLDVSDEEFRE 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F + G + SA + D +G+ +R FGF+++ AA+ +LN TDFRG+ + V
Sbjct: 248 LFEKHGDITSASIARDEQGK-SRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQK 306
Query: 281 RTE 283
+ E
Sbjct: 307 KHE 309
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +YV N+ E E+F+ G + S ++R+ E G SRG G++ +A
Sbjct: 225 KANFTNIYVKNIDLDVSDEEFRELFEKHGDITSASIARD-EQGKSRGFGFVNYIKHEAAS 283
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ AL+ +D G+++ V + + R + K Y+ + LY+ NL+
Sbjct: 284 AAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVN-LYIKNLNDD 342
Query: 214 VKPEDLRNHFGRFGTVVSARVLHD 237
V E LR+ F FGT+ SA+V+ D
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVMRD 366
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 17/192 (8%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P LYV L S + L E+F G V S+ V R+ T S G Y+ S
Sbjct: 41 PAHNQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSE 100
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ A+ L+ + + G+ R+ +S + + + +++ NL
Sbjct: 101 DGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDH 145
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGR 271
A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 146 AIDNKALHDTFAAFGNILSCKVAQDELG-NSKGYGFVHYETAEAANNAIKHVNGMLLNEK 204
Query: 272 TIIVREGVDRTE 283
+ V + + E
Sbjct: 205 KVFVGHHIPKKE 216
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 14/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + +G S+G G++ + SA+ AI L
Sbjct: 114 IFIKNLDKGIDHKALHDTFSAFGNILSCKVATD-SSGQSKGYGFVQFDNEESAQKAIEKL 172
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R + E+ I K F + +YV NLS EDL+
Sbjct: 173 NGMLLNDKQVYVGPFL----RKQERESAID--KTRF-----NNVYVKNLSETTTEEDLKK 221
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
FG +GT+ SA V+ D G+ T+ FGF++F ++D A +LNG F + V +
Sbjct: 222 AFGEYGTITSAVVMRDGDGK-TKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQK 280
Query: 281 RTE 283
+ E
Sbjct: 281 KNE 283
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 12/176 (6%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ R +YV NL + +L + F +GT+ S V R+ + G ++ G++ + + A
Sbjct: 199 KTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGD-GKTKCFGFVNFENADDAA 257
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----LYVGNL 210
A+ AL+G +E V + N R + K E+ K LY+ NL
Sbjct: 258 TAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMK----EAADKFQGANLYIKNL 313
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
++ + L+ F FGT+ S +V+ D G +R GF++FS+ E AL +NG
Sbjct: 314 DDSIGDDRLKQLFSPFGTITSCKVMRDPNG-ISRGSGFVAFSTPEEASKALMEMNG 368
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S L ++F PFGT+ S +V R+P GISRG G++
Sbjct: 293 EQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDP-NGISRGSGFV 351
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A++ ++G V + + V + R +A S
Sbjct: 352 AFSTPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFS 396
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G++++SS +DAA +L+
Sbjct: 26 LYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSS--PQDAARALD 83
Query: 265 GTDF 268
+F
Sbjct: 84 MLNF 87
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + +TG SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 310 LRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R +GF+ F + +A A ++NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|121706512|ref|XP_001271518.1| ribosome biogenesis (Nop4), putative [Aspergillus clavatus NRRL 1]
gi|119399666|gb|EAW10092.1| ribosome biogenesis (Nop4), putative [Aspergillus clavatus NRRL 1]
Length = 735
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 15/206 (7%)
Query: 89 SVEEPRSRARPCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
+V+E ++ +P L+V +LP S L E F + +PET +G G++T
Sbjct: 31 TVQEEKASTQPKRTLFVRSLPASATTESLTEYFSQSYVIKHAIAVNDPETKQCKGYGFVT 90
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFS------IDMNSRTRNAEALISPPKKIFVYE- 200
+ A+ A+ L+GS G+++RV ++ ID N A KK +
Sbjct: 91 FADLEDAQAAVKELNGSTFEGKKIRVDYAQPRHREIDENLGKSVPSAAAVELKKQREQQR 150
Query: 201 ---SPHKLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
P KL V NL W++K PEDL HF FG V V +KG FGF+
Sbjct: 151 ADTQPPKLIVRNLPWSIKTPEDLAVHFRSFGKVKF--VTLPKKGDQLAGFGFVVLRGKKN 208
Query: 257 RDAAL-SLNGTDFRGRTIIVREGVDR 281
+ AL ++NG + GRT+ V VD+
Sbjct: 209 AEKALQAVNGKEVDGRTLAVDWAVDK 234
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 71 DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEM-FKPFGTVLSV 129
DE GK V+ E+ R+ +P +L V NLP S E L + F+ FG V V
Sbjct: 127 DENLGKSVPSAAAVELKKQREQQRADTQPPKLIVRNLPWSIKTPEDLAVHFRSFGKVKFV 186
Query: 130 EVSRNPETGIS-RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181
+ P+ G G G++ + +A+ A+ A++G +V GR + V +++D +
Sbjct: 187 TL---PKKGDQLAGFGFVVLRGKKNAEKALQAVNGKEVDGRTLAVDWAVDKET 236
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +++ +P +G S+G G++ + SA+NAI
Sbjct: 106 ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAID 164
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V R E + K F + +YV NLS + EDL
Sbjct: 165 KLNGMLINDKQVYV------GQFLRKQERETALNKTKF-----NNVYVKNLSESTTEEDL 213
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+N FG FG + S V+ D G+ ++ FGF++F + D +A +LNG F + V +
Sbjct: 214 KNIFGEFGIITSVVVMRDGDGK-SKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKA 272
Query: 279 VDRTE 283
+ E
Sbjct: 273 QKKYE 277
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 17/197 (8%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
++V P A LYV +L + S+L ++F G VLSV V R+ T S G GY+
Sbjct: 6 AAVAGPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVN 65
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A A+ L+ + + G+ +R+ +S S ++ A +++
Sbjct: 66 YSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTA---------------NIFI 110
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL ++ + L + F FG ++S ++ D GQ ++ +GF+ F + ++ ++A LNG
Sbjct: 111 KNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQ-SKGYGFVQFDNEESAQNAIDKLNGM 169
Query: 267 DFRGRTIIVREGVDRTE 283
+ + V + + + E
Sbjct: 170 LINDKQVYVGQFLRKQE 186
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 15/180 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F FG + SV V R+ + G S+ G++ + + A A+ AL
Sbjct: 199 VYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGD-GKSKCFGFVNFENADDAAEAVEAL 257
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V ++ ++ + R +++ K++ LY+ NL ++
Sbjct: 258 NGKKFDEKEWYVGKAQKKYERELELKGRFEQSM----KEVVDKFQGVNLYIKNLDDSIGD 313
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+ L+ F FGT+ S +V+ D G +R GF++FS+ E AL T+ G+ ++ +
Sbjct: 314 DKLKELFSEFGTITSCKVMRDPSG-ISRGSGFVAFSTSEEASRAL----TEMNGKMVVSK 368
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S +L E+F FGT+ S +V R+P +GISRG G++
Sbjct: 287 EQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDP-SGISRGSGFV 345
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G V + + V + R +A S
Sbjct: 346 AFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 390
>gi|320583460|gb|EFW97673.1| nuclear localization sequence binding protein [Ogataea
parapolymorpha DL-1]
Length = 500
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 7/177 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V L + D LLE F+ VLS V ETG SRG GY+ S A+ A+
Sbjct: 262 LFVGRLAWAVDDQRLLEEFQSLDGVLSARVMTERETGRSRGYGYVDFESKEQAQKALEQF 321
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK----LYVGNLSWAVKPE 217
G ++ GR + + S + KK ++P + L+VGNLS+ +
Sbjct: 322 QGREIEGRPINLDMSTSKPQTPSQNQKFQDRAKKY--GDTPSQPSDTLFVGNLSFQADRD 379
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
L+ F + GTV+ R+ + + + FG++ F S E AAL +LNG GR +
Sbjct: 380 TLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEALNGEYIAGRPV 436
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL D L E F+ GTVL + + +PE+ +G GY+ GS++ AK A+ AL
Sbjct: 367 LFVGNLSFQADRDTLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEAL 426
Query: 162 DGSDVGGREMRVRFSI--DMNSRTRNA 186
+G + GR +R+ FS D N +RN
Sbjct: 427 NGEYIAGRPVRLDFSAPRDPNGGSRNG 453
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG VLS +V+ + E G SRG G++ + +A AI A+
Sbjct: 146 IFIKNLDEQIDHKALHDTFAAFGNVLSCKVATD-ENGRSRGFGFVHYDTAEAADTAIKAV 204
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R +A I K F LYV NL V ++ +
Sbjct: 205 NGMLLNDKKVFVGHYISKKER----QAHIDEQKSQFT-----NLYVKNLDTEVTDDEFND 255
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG V SA V D +G+ ++ FGF++F AA+ +L+ T+ G+ + V
Sbjct: 256 MFAKFGEVTSAVVQKDEEGK-SKGFGFVNFKDHESAQAAVDALHDTELNGKKLFVTRAQK 314
Query: 281 RTE 283
+ E
Sbjct: 315 KAE 317
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL E +MF FG V S V ++ E G S+G G++ SA+ A+ AL
Sbjct: 239 LYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKD-EEGKSKGFGFVNFKDHESAQAAVDAL 297
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+++ G+++ V + R K K+ Y+ + LY+ NL + + L
Sbjct: 298 HDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGAN-LYIKNLEDDMDDDKL 356
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
R F FGT+ S +++ D KG T++ FGF+ +SS E A++
Sbjct: 357 RAEFEPFGTITSCKIMRDEKG-TSKGFGFVCYSSPEEATKAVA 398
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 58 LYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 117
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 118 NYSLIKNRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEQIDHKALHD 162
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG V+S +V D G+ +R FGF+ + + D A+ ++NG + + V +
Sbjct: 163 TFAAFGNVLSCKVATDENGR-SRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYIS 221
Query: 281 RTE 283
+ E
Sbjct: 222 KKE 224
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LY+ NL D +L F+PFGT+ S ++ R+ E G S+G G++ S
Sbjct: 332 EKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRD-EKGTSKGFGFVCYSSP 390
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A A+ ++ +G + + V + R + E+ I+
Sbjct: 391 EEATKAVAEMNNKMLGSKPLYVSPAQRREVRRQQLESQIA 430
>gi|321249350|ref|XP_003191429.1| single-stranded DNA binding protein [Cryptococcus gattii WM276]
gi|317457896|gb|ADV19642.1| single-stranded DNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 442
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 8/177 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L F+ G V+S V + ++ SRG GY+ + ++ AI
Sbjct: 196 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLEASAKAI-EK 254
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP--HKLYVGNLSWAVKPEDL 219
DGS++ GR +RV ++ ++ + EA K +SP L++G+LS++V + +
Sbjct: 255 DGSEIDGRAIRVNYA----TQRKPNEAAEKRAKVFNDKQSPPAETLWIGSLSFSVTEDQV 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
FG+ G V S R+ DR + FG++ FSS + AAL ++NG + GR I V
Sbjct: 311 YEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVEDASAALKAMNGAEIAGRAIRV 367
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 180 NSRTRNAEAL-ISPPKKIFV----YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
N R AE ++P KK E+ ++VG LSW V + L++ F G VVSARV
Sbjct: 166 NGNKRKAEGESVAPAKKARADDGEEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARV 225
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDR 281
+ DR Q +R FG++ F+ A+ +G++ GR I V R
Sbjct: 226 VFDRDSQKSRGFGYVEFADLEASAKAIEKDGSEIDGRAIRVNYATQR 272
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 99 PCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
P E L++ +L S ++ E F G V SV + + +TG +G GY+ S+ A A
Sbjct: 292 PAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVEDASAA 351
Query: 158 IIALDGSDVGGREMRVRFS 176
+ A++G+++ GR +RV F+
Sbjct: 352 LKAMNGAEIAGRAIRVDFA 370
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 10/192 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY+ NL S D +L +F FG V V + T RG G++T+ + +A++AI
Sbjct: 20 KLYIGNLDYSTDEPQLRSVFGAFGAVTDVFLPMERGTSRPRGFGFVTLSTRQAAEDAIAK 79
Query: 161 LDGSDVGGREMRV---RFSIDMNSRTRNAEALISPPKKIFVYESPH-----KLYVGNLSW 212
+D S + GR +RV R + R+ E P + +P KLYVGNLS+
Sbjct: 80 MDQSQLDGRTIRVNESRPRGEGPGARRSNEPGTGPGG--YGAFNPQGREDVKLYVGNLSF 137
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT 272
E +R+ F ++GTV + DR R F F++ + A +NG + GRT
Sbjct: 138 DTNEEAVRSMFEQYGTVSDCFLPSDRDTGRPRGFAFVTMPAKEAETACNKVNGMELDGRT 197
Query: 273 IIVREGVDRTES 284
+ V E + S
Sbjct: 198 VRVNEAQPKVSS 209
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 89 SVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SV EP +R ++V NLP S + L +MFK FG ++S +V+ E G SRG G++
Sbjct: 100 SVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCKVA-TFEDGKSRGYGFVQ 158
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
++A AI L+ + V G+E+ V + R + E + +Y+
Sbjct: 159 FEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAKAEEKYTN-------------VYM 205
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
NL V + LR F FG +VS + D G + + F++F + R AA ++NGT
Sbjct: 206 KNLDADVNEDLLREKFSEFGKIVSLAIAKDENG-LCKGYAFVNFDKPEDARWAAETMNGT 264
Query: 267 DFRGRTIIVREGVDRTE 283
F + + V + E
Sbjct: 265 RFGSKCLYVGRAQKKAE 281
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 92/184 (50%), Gaps = 4/184 (2%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
++ + +Y+ NL + L E F FG ++S+ ++++ E G+ +G ++
Sbjct: 195 KAEEKYTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKD-ENGLCKGYAFVNFDKPED 253
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA-EALISPPKKIFVYESPHKLYVGNLSW 212
A+ A ++G+ G + + V + R + E ++ + +YV N++
Sbjct: 254 ARWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINV 313
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSLNGTDFRGR 271
V E+LR HF + GT+ S +++ D KG+ ++ FGF+ FS+ E DA + +G F G+
Sbjct: 314 GVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVKTFHGKMFHGK 372
Query: 272 TIIV 275
+ V
Sbjct: 373 PLYV 376
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S L + F F ++ SV + ++ TG S GY S A AI
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAIEKK 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ +RV +S+ RN ++V NL ++ L++
Sbjct: 86 NHSLLNGKMIRVMWSVREPDARRNGVG---------------NVFVKNLPESITNAVLQD 130
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG +VS +V G+ +R +GF+ F DA A LN T G+ I V + +
Sbjct: 131 MFKKFGNIVSCKVATFEDGK-SRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMK 189
Query: 281 RTE 283
+T+
Sbjct: 190 KTD 192
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A+NAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHEAAQNAISTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREVELGARAMEFT-----NIYVKNLHVDVDEQRLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F E + A +++NG + GR + V
Sbjct: 210 LFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A ++A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALA 368
>gi|189203851|ref|XP_001938261.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985360|gb|EDU50848.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 475
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 16/196 (8%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEEP + L+V N+ + D L F+ FG ++ V + ETG ++G GY+
Sbjct: 209 SKVEEPAAEEGVKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRVITDRETGRAKGFGYVE 268
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSI-----DMN--SRTRNAEALISPPKKIFVYE 200
+ A A + ++ GR++ V FS D N +R SPP
Sbjct: 269 FANAADAAKAQKEMHEYELDGRQLNVDFSTPRAKPDANGGARANKYGDKRSPPS------ 322
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ L++GN+S+ E ++ F +G++ + DR + FG++ FSS E AA
Sbjct: 323 --NTLFLGNVSFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAA 380
Query: 261 L-SLNGTDFRGRTIIV 275
L +LNG D GR I +
Sbjct: 381 LEALNGQDIGGRAIRI 396
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 181 SRTRNAEALISPPKKIFVYESP------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
S+ R AE + P K E P L+VGN+SW + + LR F FG +V RV
Sbjct: 193 SKKRKAEEVAEPIVKKSKVEEPAAEEGVKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRV 252
Query: 235 LHDRKGQTTRVFGFISF 251
+ DR+ + FG++ F
Sbjct: 253 ITDRETGRAKGFGYVEF 269
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ N+ SF+ S + E+F +G++ V + + +TG +G GY+ S A A+
Sbjct: 325 LFLGNV--SFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALE 382
Query: 160 ALDGSDVGGREMRVRFS 176
AL+G D+GGR +R+ ++
Sbjct: 383 ALNGQDIGGRAIRIDYA 399
>gi|171687819|ref|XP_001908850.1| hypothetical protein [Podospora anserina S mat+]
gi|170943871|emb|CAP69523.1| unnamed protein product [Podospora anserina S mat+]
Length = 459
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 1/180 (0%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S + L+ NL D + L E FK F + V + E+G SRG GY+ + +A
Sbjct: 209 SEEKSATLWCGNLGWGIDDNILYEEFKDFEGLTGARVVSDKESGRSRGFGYIDFDTHENA 268
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A A +G D+ GREMR+ F+ + ++ A + V L+VGNL ++
Sbjct: 269 EKAFNAKNGGDLQGREMRLDFAAKPAAAPQDRAAARASKHGDVVSPPSDTLFVGNLPFSA 328
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ + F V S R+ D + + F ++SF S D ++A LNG D GR +
Sbjct: 329 DEDGVSAFFNEVAKVQSLRIPTDMESGRPKGFAYVSFYSIDDAKNAFEQLNGADIDGRPV 388
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S D + F V S+ + + E+G +G Y++ SI+ AKNA L
Sbjct: 319 LFVGNLPFSADEDGVSAFFNEVAKVQSLRIPTDMESGRPKGFAYVSFYSIDDAKNAFEQL 378
Query: 162 DGSDVGGREMRVRFS 176
+G+D+ GR +R+ F+
Sbjct: 379 NGADIDGRPVRLDFA 393
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + KK ++S LYV NL ++ E
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKK-RHDSAFGVNLYVKNLDDSIDDER 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
L F +GT+ SA+V+ D +G+ ++ FGF+ F S E A+ T+ GR +
Sbjct: 303 LCKEFSPYGTITSAKVMTDEEGR-SKGFGFVCFISANEATCAV----TELNGRVV 352
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + S L + F G VLS+ V R+ + S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL + + + +
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKTIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D K ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVATDEKA-NSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L + F P+GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDSIDDERLCKEFSPYGTITSAKVMTD-EEGRSKGFGFVCFISANEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>gi|67536962|ref|XP_662255.1| hypothetical protein AN4651.2 [Aspergillus nidulans FGSC A4]
gi|40741263|gb|EAA60453.1| hypothetical protein AN4651.2 [Aspergillus nidulans FGSC A4]
Length = 1639
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V N P + D + + ++F +G ++ + R C YL + +A +A+ AL
Sbjct: 906 LFVTNFPPTADENYIRDLFSKYGEIIDIRFPSLKYNTHRRFC-YLQFKTSVAAHSAL-AL 963
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VG G + V+ S + RN +YE +++V N++W+ +DL+
Sbjct: 964 DGSAVGNGLHLVVKISDPSRKQDRNGP----------IYEG-REIHVSNVNWSASEDDLK 1012
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
F RFGTV R+ G ++ FG++ FSS E AAL+++ +FRGR + V+
Sbjct: 1013 ELFSRFGTVELVRLPRKVDG-GSKGFGYVVFSSKEEATAALAMHEQEFRGRPLHVK 1067
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A+NAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHEAAQNAISTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREVELGARAMEFT-----NIYVKNLHVDVDEQRLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F E + A +++NG + GR + V
Sbjct: 210 LFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A ++A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALA 368
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 12/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + +L E+F FG LSV V ++ E G SRG G++ A+ A+ +
Sbjct: 191 VYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHGDAQKAVDEM 249
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G+++ G+ + R + ++ + LI +I Y+ + LYV NL + E
Sbjct: 250 NGTELNGKVIYVGRAQKRLERQGELKRKFELIKQ-DRIQRYQGVN-LYVKNLDDGIDDER 307
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F +GT+ SA+V+ D G +R FGF+ FSS E A+ T+ GR + +
Sbjct: 308 LRKEFAPYGTITSAKVMTD--GPQSRGFGFVCFSSPEEATKAV----TEMNGRIVATK 359
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL ++ D L + F FG +LS +++ + +G S+G G++ + SAK
Sbjct: 116 RSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATD-ASGQSKGYGFVQFDNEESAK 174
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
NA L+G + +++ V R E + K F + +YV NL +
Sbjct: 175 NATDKLNGMLLNDKQVYV------GPFVRKQERESATNKTKF-----NNVYVKNLLESTT 223
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTI 273
EDL+N FG +G + SA V+ D G+ ++ FGF++F + DA R +LNG F +
Sbjct: 224 DEDLKNIFGEYGPITSAVVMQDGDGK-SKCFGFVNFENADDAARSVE-ALNGKKFDDKEW 281
Query: 274 IVREGVDRTE 283
V + +TE
Sbjct: 282 YVGKAQKKTE 291
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F +G + S V ++ + G S+ G++ + + A ++ AL
Sbjct: 213 VYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGD-GKSKCFGFVNFENADDAARSVEAL 271
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLR 220
+G +E V + R + K V + LYV NL ++ + LR
Sbjct: 272 NGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLR 331
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F FGT+ S +V+ D G +R GF++FS+ E AL+ +NG + + V
Sbjct: 332 ELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASRALADMNGKMVASKPLYV 386
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LYV NL S +L E+F FGT+ S +V R+P GISRG G++
Sbjct: 301 EQSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDP-NGISRGSGFV 359
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G V + + V + R +A S
Sbjct: 360 AFSTAEEASRALADMNGKMVASKPLYVALAQRKEDRRARLQAQFS 404
Score = 40.4 bits (93), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L V L + FG+ G VVS RV D + + +G++++ + + AL L
Sbjct: 34 LYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARALDML 93
Query: 264 NGTDFRGRTIIV 275
N T G+ I +
Sbjct: 94 NFTPLNGKPIRI 105
>gi|402218951|gb|EJT99026.1| hypothetical protein DACRYDRAFT_24111 [Dacryopinax sp. DJM-731 SS1]
Length = 1056
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 13/179 (7%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A C L+V N P +D + ++F PFGT++ V R C Y+ S +SA +
Sbjct: 712 AWKCTLFVTNFPEKYDDPTIRQLFSPFGTIIDVRWPSKRINTTRRFC-YVQYTSPSSAND 770
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
A ++L+ ++ E R S++++ TR + + K ++YV L+ VK
Sbjct: 771 A-LSLNDQEL---ENDRRISVNISDPTRKKQRTDAGADK-------REVYVAGLARGVKK 819
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
E+L FG G+V R+ G + FGF+ F + +AALSLN T+FR R + V
Sbjct: 820 EELEKLFGEKGSVKEVRLALGPDG-LCKGFGFVEFQDEVGAEAALSLNNTEFRKRRLAV 877
>gi|121604834|ref|YP_982163.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120593803|gb|ABM37242.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 132
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ EDL+ FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIA 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I V E
Sbjct: 63 GMNGQSLGGRSITVNE 78
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQSLGGRSITVNEARPMEAR 85
>gi|448123237|ref|XP_004204643.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|448125519|ref|XP_004205201.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358249834|emb|CCE72900.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358350182|emb|CCE73461.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
Length = 505
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 8/177 (4%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D L F+P G V V +G SRG GY+ + + A++A+
Sbjct: 290 PATLFVGRLSWNIDDEWLQREFEPLGGVTGARVIYEKASGKSRGYGYVDFETKSQAQHAL 349
Query: 159 IALDGSDVGGREMRVRFSIDMN-SRTRNAEALISPPKKIF-VYESPHK-LYVGNLSWAVK 215
G ++ GR + ++DM+ S+ R + K+ V +P L++GNLS+ +
Sbjct: 350 KEYQGREIDGRPI----NLDMSESKPRPSNPRFDRAKQFGDVPSAPSSTLFIGNLSFNAQ 405
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
++L + FG +G VVS R+ Q + FG+I FS+ E AAL +LNG GR
Sbjct: 406 RDNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAKAALEALNGEYVEGR 462
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E P L+VG LSW + E L+ F G V ARV++++ +R +G++ F + ++
Sbjct: 288 EEPATLFVGRLSWNIDDEWLQREFEPLGGVTGARVIYEKASGKSRGYGYVDFETKSQAQH 347
Query: 260 ALSLNGTDFRGRTIIVRE-GVDRTES 284
AL +++GR I R +D +ES
Sbjct: 348 ALK----EYQGREIDGRPINLDMSES 369
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + L ++F +G V+S + +P+T +G GY+ +++ AK A+ AL
Sbjct: 395 LFIGNLSFNAQRDNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAKAALEAL 454
Query: 162 DGSDVGGREMRVRFSIDMNSRTR 184
+G V GR R+ FS + R
Sbjct: 455 NGEYVEGRPCRLDFSTPRENSNR 477
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 12/196 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ F E E+F P+G + S+ + ++ + G S+G G
Sbjct: 231 DRESKFEE--MKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKD-QDGKSKGFG 287
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYE 200
++ SA +A+ AL+ ++ G+++ V + RT + EA+ +K+ Y+
Sbjct: 288 FVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRL--EKLSKYQ 345
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ L++ NL + E L F FGT+ SA+V+ D G+ ++ FGF+ FS+ E A
Sbjct: 346 GVN-LFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGK-SKGFGFVCFSTPEEATKA 403
Query: 261 LS-LNGTDFRGRTIIV 275
++ +N G+ + V
Sbjct: 404 ITEMNQRMINGKPLYV 419
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ + AI L
Sbjct: 65 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAIDEL 124
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 125 NYSLVEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 169
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ + + +AA+ ++NG R + V + V
Sbjct: 170 TFSAFGRILSCKVATDDMGQ-SKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVS 228
Query: 281 RTE 283
+ +
Sbjct: 229 KKD 231
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 12/143 (8%)
Query: 60 AVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-----------SRARPCELYVCNLP 108
+ VD + + EING+ G EE + S+ + L++ NL
Sbjct: 296 SAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLD 355
Query: 109 RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168
D +L E FKPFGT+ S +V + + G S+G G++ + A AI ++ + G
Sbjct: 356 DQIDSEKLEEEFKPFGTITSAKVMVD-DAGKSKGFGFVCFSTPEEATKAITEMNQRMING 414
Query: 169 REMRVRFSIDMNSRTRNAEALIS 191
+ + V + + R E I
Sbjct: 415 KPLYVALAQRKDVRRSQLEQQIQ 437
>gi|383760540|ref|YP_005439526.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
gi|381381210|dbj|BAL98027.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
Length = 161
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL+++V+ + L+ F +FGTV SA+V+ DR+ ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLAYSVRDDSLQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR I+V E
Sbjct: 63 GMNGQPLEGRAIVVNE 78
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S L + F FGTV S +V + ETG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLAYSVRDDSLQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRV 173
++G + GR + V
Sbjct: 64 MNGQPLEGRAIVV 76
>gi|380494250|emb|CCF33289.1| Poly(A) RNA binding protein [Colletotrichum higginsianum]
Length = 677
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHV 212
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+S V ++ R+
Sbjct: 213 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NIYIKNISGEVTDDEFRD 263
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V S+ + D++G+ +R FGF++F++ +A A LNG DFRG+ + V
Sbjct: 264 LFTPFGDVTSSSLARDQEGK-SRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQK 322
Query: 281 RTE 283
+ E
Sbjct: 323 KHE 325
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 14/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +Y+ N+ E ++F
Sbjct: 216 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNIYIKNISGEVTDDEFRDLF 265
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
PFG V S ++R+ E G SRG G++ + +A A+ L+G D G+++ V + +
Sbjct: 266 TPFGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKH 324
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NL V E LR F FG + SA+V+ D
Sbjct: 325 EREEELRKSYEAARMEKANKYQGVN-LYIKNLDDDVDDEKLRQLFADFGPITSAKVMRD 382
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 87/197 (44%), Gaps = 20/197 (10%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ P++ A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 55 SAAPHPQASA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 111
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ + + A+ L+ + + GR R+ +S + + + +++
Sbjct: 112 YNTTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 156
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A +NG
Sbjct: 157 KNLDVAIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETDEAASQAIKHVNGM 215
Query: 267 DFRGRTIIVREGVDRTE 283
+ + V + + +
Sbjct: 216 LLNEKKVYVGHHIPKKD 232
>gi|4678944|emb|CAB41335.1| putative protein [Arabidopsis thaliana]
Length = 546
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 103/199 (51%), Gaps = 13/199 (6%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E ++ + +P S A +Y+ N+PR+ +L ++ + G V +V + +G SR
Sbjct: 60 ETEEKPAALDPSSEAAR-RVYIGNIPRTVTNEQLTKLVEEHGAV--EKVMYDKYSGRSRR 116
Query: 143 CGYLTMGSINSAKNAIIALDGSD-------VGGREMRVRFSIDMNSRTRNAEALISPPKK 195
G+ TM S+ A + L+G+ V GRE++V + + + + L S
Sbjct: 117 FGFATMKSVEDANAVVEKLNGNSLFLVSQTVEGREIKVNITEKPIASSPDLSVLQSE-DS 175
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
FV +SP+K+YVGNL+ V E L N F G VVSA+V + FGF++FSS+
Sbjct: 176 AFV-DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEE 234
Query: 256 ERDAAL-SLNGTDFRGRTI 273
+ +AA+ +LN + G+ I
Sbjct: 235 DVEAAIVALNNSLLEGQKI 253
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 22/144 (15%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGK------DNVGGNEV-----------DDDSSVE 91
RS GF ++ +V D AVV +++NG V G E+ D SV
Sbjct: 113 RSRRFGFATMKSVEDANAVV--EKLNGNSLFLVSQTVEGREIKVNITEKPIASSPDLSVL 170
Query: 92 EPRSRA---RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+ A P ++YV NL ++ L +F G V+S +VSR P T S G G++T
Sbjct: 171 QSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTF 230
Query: 149 GSINSAKNAIIALDGSDVGGREMR 172
S + AI+AL+ S + G+++R
Sbjct: 231 SSEEDVEAAIVALNNSLLEGQKIR 254
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA LY+ NLP EL EMF +G V S V + E+G RG G++ + SA
Sbjct: 234 RAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQAD-ESGKHRGFGFVNYENHESAS 292
Query: 156 NAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----LYV 207
A+ AL D G + R + ++ ++ R A YE+ K LY+
Sbjct: 293 KAVEALHDKDYKGNILYVARAQKRVERDAELRRAHEQQK-------YETTLKYQGVNLYI 345
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGT 266
NL E L+ F FGT+ S +V+ D KG +R FGF+ FS+ E A++ +NG
Sbjct: 346 KNLDDEYDDEKLQAEFLPFGTITSCKVMKDDKG-VSRGFGFVCFSAPDEATKAVAEMNGK 404
Query: 267 DFRGRTIIV 275
+ + V
Sbjct: 405 MLGSKPLYV 413
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + TG S+G G++ + SA+ AI +
Sbjct: 147 IFIKNLDETIDNKALHDTFAAFGDILSCKVAMD-STGASKGYGFVHYVTAESAEAAIKGV 205
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + + + V + R +A I + F LY+ NL V E+L
Sbjct: 206 NGMQLNDKVVFVGIHVPRRER----QAKIDEVRAHFT-----NLYIKNLPTEVTTEELNE 256
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V SA V D G+ R FGF+++ + ++ A +L+ D++G + V
Sbjct: 257 MFSKYGPVTSAAVQADESGK-HRGFGFVNYENHESASKAVEALHDKDYKGNILYVARAQK 315
Query: 281 RTE 283
R E
Sbjct: 316 RVE 318
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + A+ A+ L
Sbjct: 59 LYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 118
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + + R+ +S S + + I ++ NL + + L +
Sbjct: 119 NYSLIKNKACRIMWSQRDPSLRKTGQGNI---------------FIKNLDETIDNKALHD 163
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ + + +AA+ +NG + + V V
Sbjct: 164 TFAAFGDILSCKVAMDSTG-ASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVP 222
Query: 281 RTE 283
R E
Sbjct: 223 RRE 225
>gi|154322639|ref|XP_001560634.1| hypothetical protein BC1G_00662 [Botryotinia fuckeliana B05.10]
gi|347837181|emb|CCD51753.1| hypothetical protein [Botryotinia fuckeliana]
Length = 570
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL+ F+ G V ++ ++ +G S+G GY+ + S A I L
Sbjct: 179 VFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVP-AAIQL 237
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + + + + N + RN EA S P +I H+LYVGN+ +++ DL+
Sbjct: 238 TGQRLLGIPIIAQLTEAEKNRQVRNPEATTSNPNQIPF----HRLYVGNIHFSITESDLQ 293
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ + +G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 294 NVFEPFGELEFVQLQKEEQGR-SRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVGLGN 352
Query: 280 DR 281
D+
Sbjct: 353 DK 354
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +G + SA+V+ D +G+ ++ FGF+ F++ +E A++ LNG
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNG 349
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L + F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + + A A+ L
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347
Query: 162 DGSDVGGREMRV 173
+G VG + + V
Sbjct: 348 NGRVVGSKPLYV 359
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +++ +P +G S+G G++ + SA+NAI
Sbjct: 106 ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAID 164
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V R E + K F + +YV NLS + EDL
Sbjct: 165 KLNGMLINDKQVYV------GQFLRKQERETALNKTKF-----NNVYVKNLSESTTEEDL 213
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+N FG FG + S V+ D G+ ++ FGF++F + D +A +LNG F + V +
Sbjct: 214 KNIFGEFGIITSVVVMRDGDGK-SKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKA 272
Query: 279 VDRTE 283
+ E
Sbjct: 273 QKKYE 277
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 94/197 (47%), Gaps = 17/197 (8%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
++V P A LYV +L + S+L ++F G VLSV V R+ T S G GY+
Sbjct: 6 AAVAGPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVN 65
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A A+ L+ + + G+ +R+ +S S ++ A +++
Sbjct: 66 YSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTA---------------NIFI 110
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL ++ + L + F FG ++S ++ D GQ ++ +GF+ F + ++ ++A LNG
Sbjct: 111 KNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQ-SKGYGFVQFDNEESAQNAIDKLNGM 169
Query: 267 DFRGRTIIVREGVDRTE 283
+ + V + + + E
Sbjct: 170 LINDKQVYVGQFLRKQE 186
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 89/180 (49%), Gaps = 15/180 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F FG + SV V R+ + G S+ G++ + + A A+ AL
Sbjct: 199 VYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGD-GKSKCFGFVNFENADDAAEAVEAL 257
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V ++ ++ + R +++ K++ LY+ NL ++
Sbjct: 258 NGKKFDEKEWYVGKAQKKYERELELKGRFEQSM----KEVVDKFQGVNLYIKNLDDSIGD 313
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+ L+ F FGT+ S +V+ D G +R GF++FS+ E AL T+ G+ ++ +
Sbjct: 314 DKLKELFSEFGTITSCKVMRDPSG-ISRGSGFVAFSTSEEASRAL----TEMNGKMVVSK 368
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S +L E+F FGT+ S +V R+P +GISRG G++
Sbjct: 287 EQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDP-SGISRGSGFV 345
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G V + + V + R +A S
Sbjct: 346 AFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 390
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E + +YV NL + + F FG V +V + ++ G SRG G++ S
Sbjct: 198 KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG-NGKSRGFGFVNFES 256
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI----FVYESPHKLY 206
+ AK A+ AL+G+ +G +++ V + R + L+ K++ E LY
Sbjct: 257 PDEAKKAVEALNGAMLGSKKLFVGRAQKKAER----QELLKHEKEMVNCNIGKEKASNLY 312
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
V NL +V + L+ HF G + SA+V+ G ++ FGF+ FS+ E AL +LNG
Sbjct: 313 VKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNG 371
Query: 266 TDFRGRTIIV 275
T GR++ +
Sbjct: 372 TLLHGRSLYI 381
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL S + + L ++F FG +LS +V+ E G S+ G++ S +SA A+ AL
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAE--ENGKSKCFGFVQFDSDDSATAALNAL 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+++ V + R +E + F +YV NL + + +R+
Sbjct: 177 NDTMLDGKKLFVSKFVKKCERKEASE------ETKFT-----NVYVKNLGEDLTEDIIRD 225
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V + ++ D G+ +R FGF++F S D + A +LNG + + V
Sbjct: 226 KFSEFGKVGTVVIMKDGNGK-SRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQK 284
Query: 281 RTE 283
+ E
Sbjct: 285 KAE 287
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LYV NL S D +L E F G + S +V R+ ++G+S+G G++ + A+
Sbjct: 305 KEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRH-DSGLSKGFGFVCFSTSEEAQ 363
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTR 184
A+ L+G+ + GR + + + R R
Sbjct: 364 KALTTLNGTLLHGRSLYIAMAQRKEDRQR 392
>gi|347756146|ref|YP_004863709.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
gi|347588663|gb|AEP13192.1| RNA-binding proteins (RRM domain) [Candidatus Chloracidobacterium
thermophilum B]
Length = 112
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KLYVGNLS+ EDLR+HF + GTV SA+V+ DR +R FGF+ F+S + + A+ +
Sbjct: 2 KLYVGNLSFQTTSEDLRDHFSKAGTVESAQVVEDRDTNRSRGFGFVEFTSTEDGNRAIEM 61
Query: 264 -NGTDFRGRTIIVREGVDRTE 283
+GT+F GRT+ V E R E
Sbjct: 62 FHGTEFNGRTLTVNEARPREE 82
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+LYV NL +L + F GTV S +V + +T SRG G++ S AI
Sbjct: 1 MKLYVGNLSFQTTSEDLRDHFSKAGTVESAQVVEDRDTNRSRGFGFVEFTSTEDGNRAIE 60
Query: 160 ALDGSDVGGREMRV 173
G++ GR + V
Sbjct: 61 MFHGTEFNGRTLTV 74
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-NSGRSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ +
Sbjct: 252 NGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQ--DRLSRYQGVN-LYVKNLDDSIDDD 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GSHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G++LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D+ G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDKHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
SR + LYV NL S D +L + F P+G + S +V E S+G G++ S A
Sbjct: 289 SRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGSHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALA 368
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 101/196 (51%), Gaps = 12/196 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ F E ++F P+G + S+ + ++ + G S+G G
Sbjct: 229 DRESKFEE--MKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKD-QDGKSKGFG 285
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYE 200
++ SA A+ AL+ ++ G+++ V + RT + EA+ +K+ Y+
Sbjct: 286 FVNYEEHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRL--EKLSKYQ 343
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ L+V NL + E L F FGT+ SA+V+ D G+ +R FGF+ FS+ E A
Sbjct: 344 GVN-LFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGK-SRGFGFVCFSTPEEATKA 401
Query: 261 LS-LNGTDFRGRTIIV 275
++ +N G+ + V
Sbjct: 402 ITEMNQRMVNGKPLYV 417
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + AI L
Sbjct: 63 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIDEL 122
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 123 NYSLIENRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 167
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ + +++A A ++NG R + V + V
Sbjct: 168 TFSAFGRILSCKVATDDLGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHVS 226
Query: 281 RTE 283
+ +
Sbjct: 227 KKD 229
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + L+V NL D +L E FKPFGT+ S +V + + G SRG G++ +
Sbjct: 337 EKLSKYQGVNLFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVD-DAGKSRGFGFVCFSTP 395
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ V G+ + V + + R E I
Sbjct: 396 EEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQ 435
>gi|156064869|ref|XP_001598356.1| hypothetical protein SS1G_00444 [Sclerotinia sclerotiorum 1980]
gi|154691304|gb|EDN91042.1| hypothetical protein SS1G_00444 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 570
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 8/182 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL+ F+ G V ++ ++ +G S+G GY+ + S A I L
Sbjct: 179 VFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVP-AAIQL 237
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + + + + N + RN EA S P +I H+LYVGN+ +++ DL+
Sbjct: 238 TGQRLLGIPIIAQLTEAEKNRQVRNPEATTSNPNQIPF----HRLYVGNIHFSITEADLQ 293
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ + +G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 294 NVFEPFGELEFVQLQKEEQGR-SRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVGLGN 352
Query: 280 DR 281
D+
Sbjct: 353 DK 354
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL ++ D L + F FG +LS +V+ + G S G G++ + SAKNAI L
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGNILSCKVATD-SAGQSLGYGFVQFDNEESAKNAIDKL 177
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R + K F + +YV NLS EDL+
Sbjct: 178 NGMLLNDKQVYVGPFLRRQERESGTD------KTKF-----NNVYVKNLSETTTEEDLKK 226
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIVREGV 279
FG +G + SA V+ D G+ +R FGF++F + DA R +LNG F + V +
Sbjct: 227 IFGEYGAITSAVVMRDGDGK-SRCFGFVNFENPDDAARSVE-ALNGKTFDEKEWYVGKAQ 284
Query: 280 DRTE 283
++E
Sbjct: 285 KKSE 288
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L ++F +G + S V R+ + G SR G++ + + A ++ AL
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGD-GKSRCFGFVNFENPDDAARSVEAL 268
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVGNLSWAVKPEDL 219
+G +E V + + R + K V +E LYV NL ++ + L
Sbjct: 269 NGKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEG-LNLYVKNLDDSITDDKL 327
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+ F FGT+ S +V+ D G ++ GF+++S+ E AL T+ G+ I+ +
Sbjct: 328 KELFSEFGTITSCKVMRDPNG-VSKGSGFVAYSTAEEASKAL----TEMNGKMIVSK 379
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + LYV NL S +L E+F FGT+ S +V R+P G+S+G G++
Sbjct: 298 EQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDP-NGVSKGSGFV 356
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G + + + V + R +A S
Sbjct: 357 AYSTAEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFS 401
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L E F PFGT++S +V + E S+G G++ +A AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGTIMSSKVMTDGEG--SKGYGFVHYQDRRAADRAIEEM 157
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE + + + + R AE P + VY + N V E LR
Sbjct: 158 NGKLL--RESTLFVARFKSRKDREAELRDKPTEFTNVY-------IKNFGDDVDDEKLRE 208
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G +S +V+ D G++ + FGF+SF S +A ++A +NG D G+TI V
Sbjct: 209 VFSKYGQTLSVKVMKDATGKS-KGFGFVSFDSHEAAKNAVEDMNGQDINGQTIFVGRAQK 267
Query: 281 RTE 283
+ E
Sbjct: 268 KVE 270
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E R +P E +Y+ N D +L E+F +G LSV+V ++ TG S+G G+++
Sbjct: 179 EAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDA-TGKSKGFGFVSF 237
Query: 149 GSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S +AKNA+ ++G D+ G+ + V R + + E K+ KLY+
Sbjct: 238 DSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYI 297
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
NL + E LR F FG++ +V+ + GQ ++ FG I F S
Sbjct: 298 KNLDDTIDDETLRKEFSVFGSICRVKVMQE-AGQ-SKGFGLICFFS 341
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ + S G Y+ +N A
Sbjct: 5 AKYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A++ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALVTMNFDVIKGKSIRLMWS------QRDACLRRSGVGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FGT++S++V+ D G+ ++ +GF+ + D A+ +NG R T+
Sbjct: 110 DNKTLYEHFSPFGTIMSSKVMTD--GEGSKGYGFVHYQDRRAADRAIEEMNGKLLRESTL 167
Query: 274 IV 275
V
Sbjct: 168 FV 169
>gi|333977917|ref|YP_004515862.1| RNP-1 like RNA-binding protein [Desulfotomaculum kuznetsovii DSM
6115]
gi|333821398|gb|AEG14061.1| RNP-1 like RNA-binding protein [Desulfotomaculum kuznetsovii DSM
6115]
Length = 85
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LYVGNL WA + EDL F R+G ++SARV+ DR+ +R FGF+ +D + DA + +L
Sbjct: 5 LYVGNLPWATRAEDLEEAFSRYGEIISARVITDRQTGRSRGFGFVEV-ADKDADAIIAAL 63
Query: 264 NGTDFRGRTIIVREGVDRTE 283
NGT+F GR I V E R E
Sbjct: 64 NGTEFNGRVITVNEARPREE 83
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + +L E F +G ++S V + +TG SRG G++ + A I AL
Sbjct: 5 LYVGNLPWATRAEDLEEAFSRYGEIISARVITDRQTGRSRGFGFVEVAD-KDADAIIAAL 63
Query: 162 DGSDVGGREMRV 173
+G++ GR + V
Sbjct: 64 NGTEFNGRVITV 75
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FGTVLS +V+ + ETG S+G G++ + +A+NAI A+
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGTVLSCKVATD-ETGRSKGYGFVHYETAEAAENAIKAV 197
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + + F LYV NL V ++
Sbjct: 198 NGMLLNDKKVYVGHHISRKERQSKLEEM----RAQFT-----NLYVKNLDPEVTQDEFIE 248
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F ++G V SA + D +G+ ++ FGF++F + E A+ LN + +G+ + V
Sbjct: 249 LFKKYGNVTSAVISVDEEGK-SKGFGFVNFETHDEAQKAVDELNDFELKGKKLFVSRAQK 307
Query: 281 RTE 283
+ E
Sbjct: 308 KAE 310
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 7/178 (3%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
S +EE RA+ LYV NL E +E+FK +G V S +S + E G S+G G++
Sbjct: 219 QSKLEE--MRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVD-EEGKSKGFGFV 275
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
+ + A+ A+ L+ ++ G+++ V + R K K+ Y+ +
Sbjct: 276 NFETHDEAQKAVDELNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVN- 334
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LY+ NL V + LR F FGT+ S +V+ D KGQ ++ FGF+ FSS E A++
Sbjct: 335 LYIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEKGQ-SKGFGFVCFSSPDEATKAVA 391
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 51 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL A+ + L +
Sbjct: 111 NYSLIKNRPCRIMWSQRDPALRKTGQGNI---------------FIKNLDEAIDNKALHD 155
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FGTV+S +V D G+ ++ +GF+ + +++A +A ++NG + + V +
Sbjct: 156 TFAAFGTVLSCKVATDETGR-SKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHIS 214
Query: 281 RTE 283
R E
Sbjct: 215 RKE 217
>gi|398409740|ref|XP_003856335.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
gi|339476220|gb|EGP91311.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
Length = 505
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 4/185 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V N+ + D L F+ FG + V + + ++G S+G GY+ +AK A+ A
Sbjct: 244 LFVGNISWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEFSDPQNAKKALEAK 303
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPHK-LYVGNLSWAVKPED 218
+G+++ GRE+R+ FS + A + F +P L+VGN+S+
Sbjct: 304 NGAELDGRELRLDFSTPRTNDGPGAGNKSNDRAARFGDTTNAPAATLFVGNISFDADENA 363
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277
+ +F GT+ + R+ DR+ + FG++ SS E AA +L G D GR I +
Sbjct: 364 ITEYFQEHGTIKAVRLPTDRETGAPKGFGYVEMSSIEEAQAAFTALQGADIAGRPIRLDY 423
Query: 278 GVDRT 282
+R+
Sbjct: 424 AAERS 428
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETG 138
GN+ +D ++ + A L+V N+ SFD E + E F+ GT+ +V + + ETG
Sbjct: 329 GNKSNDRAARFGDTTNAPAATLFVGNI--SFDADENAITEYFQEHGTIKAVRLPTDRETG 386
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
+G GY+ M SI A+ A AL G+D+ GR +R+ ++ +
Sbjct: 387 APKGFGYVEMSSIEEAQAAFTALQGADIAGRPIRLDYAAE 426
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 207
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + I R E + K F +YV N+ V ++ R
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEM----KANFT-----NVYVKNIGPDVTDDEFRE 258
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG V S+ + D++G+ R FGF++F++ +A A LNG DFRG+ + V
Sbjct: 259 LFEKFGDVTSSSLARDQEGK-PRGFGFVNFTTHEAAFKAVEDLNGKDFRGQELYVGRAQK 317
Query: 281 RTE 283
+ E
Sbjct: 318 KHE 320
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 27/214 (12%)
Query: 73 INGKDNVGGNEVD-------DDSSVEEPRSRARP---CELYVCNLPRSFDISELLEMFKP 122
+NG +V VD +D+S P + P LYV L S + L E+F
Sbjct: 22 LNGSGDVKAPAVDTAVSAGAEDASAPTPTTAPHPQNSASLYVGELDPSVTEAMLFELFSQ 81
Query: 123 FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
G V S+ V R+ T S G Y+ S + A+ L+ + + GR R+ +S +
Sbjct: 82 IGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNYTLIKGRPCRIMWSQRDPAL 141
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
+ + +++ NL A+ + L + F FG ++S +V D G
Sbjct: 142 RKTGQG---------------NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENG-N 185
Query: 243 TRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
++ +GF+ + +D A A +NG + + V
Sbjct: 186 SKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYV 219
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ E E+F+ FG V S ++R+ E G RG G
Sbjct: 227 DRQSKFEE--MKANFTNVYVKNIGPDVTDDEFRELFEKFGDVTSSSLARDQE-GKPRGFG 283
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +A A+ L+G D G+E+ V + + R + K Y+
Sbjct: 284 FVNFTTHEAAFKAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 343
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NL V E LR F FG + SA+V+ D
Sbjct: 344 N-LYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRD 377
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 348 KAVTEMNGRIVGTKPLYVALA 368
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 108/198 (54%), Gaps = 17/198 (8%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P SR + +++ NL ++ D L + F FG ++S +++ + +G S+G G++
Sbjct: 108 SHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQ 166
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ +SA+NAI L+G + +++ V + R ++ + ++S K + +YV
Sbjct: 167 FEAEDSAQNAIDKLNGMLINDKQVFVGHFL----RKQDRDNVLSKTKF-------NNVYV 215
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
NLS + +DL+N FG +GT+ SA ++ D G+ ++ FGF++F + DA + A +LNG
Sbjct: 216 KNLSESFTEDDLKNEFGAYGTITSAVLMRDADGR-SKCFGFVNFENAEDAAK-AVEALNG 273
Query: 266 TDFRGRTIIVREGVDRTE 283
+ V + ++E
Sbjct: 274 KKVDDKEWYVGKAQKKSE 291
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ + +YV NL SF +L F +GT+ S + R+ + G S+ G++ + A
Sbjct: 206 SKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDA 264
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSW 212
A+ AL+G V +E V + + R + + K V + LY+ NL
Sbjct: 265 AKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDD 324
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT 272
++ E L+ F FGT+ S +++ D G +R GF++FS+ E AL + G+
Sbjct: 325 SITDEKLKEMFSEFGTITSYKIMRDPNG-VSRGSGFVAFSTPEEASRALG----EMNGKM 379
Query: 273 IIVR 276
I+ +
Sbjct: 380 IVSK 383
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S +L EMF FGT+ S ++ R+P G+SRG G++ + A A+ +
Sbjct: 317 LYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDP-NGVSRGSGFVAFSTPEEASRALGEM 375
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G + + + V + R +A S
Sbjct: 376 NGKMIVSKPLYVAVAQRKEDRRARLQAQFS 405
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G+++F++ +DAA +L+
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTN--PQDAARALD 91
Query: 265 GTDF 268
+F
Sbjct: 92 VLNF 95
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL R+ D L + F FG +LS +++ + +G+S+G G++ + SA++AI
Sbjct: 112 ANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAID 170
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + + + V R ++ + +S K + +YV NLS +V +DL
Sbjct: 171 KLNGMLLNDKPVYVGHF----QRKQDRDNALSNAKF-------NNVYVKNLSESVTDDDL 219
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
+N FG +GT+ SA V+ D G+ ++ FGF++F ++DA +A +LNG F + V +
Sbjct: 220 KNTFGEYGTITSAVVMRDVDGK-SKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKA 278
Query: 279 VDRTE 283
+ + E
Sbjct: 279 LKKYE 283
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 12/195 (6%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S A+ +YV NL S +L F +GT+ S V R+ + G S+ G++ + ++A
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAA 256
Query: 155 KNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
A+ AL+G +E V ++ ++ + R+ +++ K + LY+ N
Sbjct: 257 AEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFY----GANLYLKN 312
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDF 268
L +V E L F FGTV S ++L D +G +R GF++FS+ E AL+ +NG
Sbjct: 313 LDDSVTDEKLSELFSEFGTVTSCKILRDPQG-ISRGSGFVAFSTPEEATRALAEMNGKMV 371
Query: 269 RGRTIIVREGVDRTE 283
G+ + V + E
Sbjct: 372 AGKPLYVAPAQKKEE 386
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + LY+ NL S +L E+F FGTV S ++ R+P+ GISRG G++
Sbjct: 293 EQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQ-GISRGSGFV 351
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
+ A A+ ++G V G+ + V
Sbjct: 352 AFSTPEEATRALAEMNGKMVAGKPLYV 378
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS R+ D Q + +G+++FS+ DAA +++
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSN--PHDAAKAMD 83
Query: 265 GTDF 268
+F
Sbjct: 84 VLNF 87
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++
Sbjct: 219 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EQGVSKGFGFVN 275
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---K 204
+ SAK A+ L+ ++ G+++ + R AE S +K E+
Sbjct: 276 YENHESAKQAVDELNEKEINGKKLYAGRA--QTKSEREAELKKSHEEKRIENEAKSAGVN 333
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LY+ NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +
Sbjct: 334 LYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEM 392
Query: 264 NG 265
NG
Sbjct: 393 NG 394
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + + I ++ NL ++ + L +
Sbjct: 110 NYSLIKGQSCRIMWSQRDPALRKTGQGNI---------------FIKNLDQSIDNKALHD 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G+ +R F F+ +S+ DAA+ ++NG + + V V
Sbjct: 155 TFAAFGDILSCKVGTDENGK-SRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVG 213
Query: 281 RTE 283
+ E
Sbjct: 214 KKE 216
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G SRG ++ + +A AI A+
Sbjct: 138 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R E L + F +Y+ N+ V + +
Sbjct: 197 NGMLLNDKKVYVGHHVGKKERLSKVEEL----RAQFT-----NVYIKNVDLEVTDAEFED 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG +S + D +G ++ FGF+++ + ++ + A LN + G+ +
Sbjct: 248 LVKPFGPTISVALSRDEQG-VSKGFGFVNYENHESAKQAVDELNEKEINGKKLYAGRAQT 306
Query: 281 RTE 283
++E
Sbjct: 307 KSE 309
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 14/182 (7%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R ++YV NL +L F+ FG V+ + + + G +RG G++ M +S K
Sbjct: 192 RDEGAKIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYD-GNARGFGFIQMSDEDSLK 250
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI ++G + GR + V S+ R A PK+ KLYVGNLSW +
Sbjct: 251 -AIEGMNGVEFDGRTLNVNKSLPKGQRPAAA-----APKET-------KLYVGNLSWGTE 297
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
LR FG +G+V+ + DR+ R F F++ D AA +G + GR + V
Sbjct: 298 EGALRELFGEYGSVIDCYIPTDRETGQHRGFAFVTMGPDDALRAADETDGYELDGRILRV 357
Query: 276 RE 277
E
Sbjct: 358 NE 359
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F P SV+V + ETG RG ++ M + + + AI L+ S++ GR + V S+
Sbjct: 117 FSPKRGGGSVDVPLSRETGKCRGFAFVAMTNSDDHEAAIEQLNMSEIAGRTIYVSESL-- 174
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
+ + AE + E K+YVGNL++ EDL+ F FG V+ + D
Sbjct: 175 -PKDQVAEKKKKFQGRKKRDEGA-KIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYD 232
Query: 240 GQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
G R FGFI S + A +NG +F GRT+ V
Sbjct: 233 G-NARGFGFIQMSDEDSLKAIEGMNGVEFDGRTLNV 267
>gi|325183203|emb|CCA17661.1| nucleolin putative [Albugo laibachii Nc14]
Length = 701
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG- 149
++P+S + E+Y+ LP +++ E F+ GTV +++ G R G +
Sbjct: 428 KQPKSTEK-VEIYILGLPWEATEAQVRERFESCGTVEHIDMQTQ---GDGRPSGKARIRF 483
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
S S A + LDGSD GGR ++++ + ++ + N +VGN
Sbjct: 484 SCASEAEAALELDGSDFGGRWLKIQLANEILEKPENCTTA----------------FVGN 527
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFR 269
L W + F + G + R+L DR+ R G++ F+S D A+ LNG DF
Sbjct: 528 LPWDADDNSVCEFFSQCGEIGECRLLSDRETGEFRGIGYVEFTSTEAADEAIKLNGADFN 587
Query: 270 GRTIIVREGVDRTE 283
GR++ + R +
Sbjct: 588 GRSLRINYAKQRQQ 601
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 348 KAVTEMNGRIVGTKPLYVALA 368
>gi|334339635|ref|YP_004544615.1| RNP-1 like RNA-binding protein [Desulfotomaculum ruminis DSM 2154]
gi|334090989|gb|AEG59329.1| RNP-1 like RNA-binding protein [Desulfotomaculum ruminis DSM 2154]
Length = 85
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVGNL WA K EDL+ F ++G V+S+RV+ DR+ +R FGF+ + + +LN
Sbjct: 4 LYVGNLPWATKAEDLQEAFSQYGEVISSRVITDRETGRSRGFGFVEVNDEDAEKMVAALN 63
Query: 265 GTDFRGRTIIVREGVDR 281
GTD GR I V E R
Sbjct: 64 GTDLNGRVITVNEAKSR 80
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + +L E F +G V+S V + ETG SRG G++ + A+ + AL
Sbjct: 4 LYVGNLPWATKAEDLQEAFSQYGEVISSRVITDRETGRSRGFGFVEVND-EDAEKMVAAL 62
Query: 162 DGSDVGGREMRV 173
+G+D+ GR + V
Sbjct: 63 NGTDLNGRVITV 74
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 348 KAVTEMNGRIVGTKPLYVALA 368
>gi|121583148|ref|YP_973589.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120596410|gb|ABM39847.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 148
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ EDL+ FG+FGTV SA+V+ +R ++ FGF+ ++DA+ AA++
Sbjct: 3 NKLYVGNLPYTVRDEDLQQSFGQFGTVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I V E
Sbjct: 63 GMNGQPLGGRSITVNE 78
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + +L + F FGTV S +V +TG S+G G++ M + A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGTVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSITVNEARPMEAR 85
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + ++G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ S + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 310 LRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F P G ++S+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R +GF+ F + +A A ++NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDNVG--------GNEVDDDSSV--------EEPRSRARPCELYVCNL 107
EEA E+NGK+ G ++ S + +E +R + LYV NL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F P+GT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|365091634|ref|ZP_09328989.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415945|gb|EHL23069.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 192
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA+S
Sbjct: 3 NKLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIS 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQPLGGRSIVVNE 78
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAISG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSIVVNEARPMEPR 85
>gi|406866575|gb|EKD19615.1| RNA splicing factor [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 587
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 93/182 (51%), Gaps = 8/182 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL+ F+ G V ++ ++ +G S+G GY+ + S A I L
Sbjct: 194 VFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVP-AAIQL 252
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + + + + N + RN EA S P +I H+LYVGN+ +++ DL+
Sbjct: 253 TGQKLLGIPIIAQLTEAEKNRQVRNPEATSSNPNQIPF----HRLYVGNIHFSITESDLQ 308
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ + +G+ +R +GF+ F ++ R+A +NG D GR I V G
Sbjct: 309 NVFEPFGELEFVQLQKEEQGR-SRGYGFVQFRDPSQAREALEKMNGFDLAGRPIRVGLGN 367
Query: 280 DR 281
D+
Sbjct: 368 DK 369
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 348 KAVTEMNGRIVGTKPLYVALA 368
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 17/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + +L+++FKP+GT+L+V V R+ T S G GY+ +NSA A+ L
Sbjct: 23 LYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDDVNSASKAMEEL 82
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V +L
Sbjct: 83 NFKRVGEKCIRIMW------QQRDPA---------LRYSGSGNIFVKNLKEEVDSRELSL 127
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F +FG ++S +V+ D G+ +R +GF+ F D AA+ +NG
Sbjct: 128 IFKKFGEILSCKVMDDESGK-SRGYGFVHFKDDDAAKAAIEKMNG 171
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 7/176 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ L + D + + F FG + S + ++ R + + A AI A
Sbjct: 205 VYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKN---GRAFAFCNFEKHDDAVKAIEAS 261
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLR 220
+V G ++ R +E LI+ +K +S + LYV N +DL
Sbjct: 262 HDQEVEGVTQPGEKLYVQRAQPR-SERLIALRQKYMQCQSLGNNLYVRNFDAEFTEKDLN 320
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +G + S RV+ D G +R FGF+SF + + +AAL +NG G+ ++V
Sbjct: 321 ELFKEYGVIRSCRVMTDANG-ISRGFGFVSFENADQANAALREMNGRMLNGKPLVV 375
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + G S+G G+++ S
Sbjct: 307 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSR-GKSKGFGFVSFDS 365
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVG 208
+AK A+ ++G D+ G+ + V + R + + K+ I Y+ KLYV
Sbjct: 366 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGV-KLYVK 424
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
NL + E LRN F FG+++ +V+ ++GQ ++ FGFI FSS DA + A + +NG
Sbjct: 425 NLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQ-SKGFGFICFSSLEDATK-AMIEMNG 480
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 18/172 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 131 AKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDA 190
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 191 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDKSI 235
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG
Sbjct: 236 DNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNG 285
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 48 SRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSVEE-----PR 94
SR GF V E A +E+NG+D G +V+ + +++ R
Sbjct: 351 SRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKR 410
Query: 95 SRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
R R + LYV NL + D +L F FG+++ V+V + + G S+G G++ S+
Sbjct: 411 ERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFSSL 468
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A A+I ++G +G + + +
Sbjct: 469 EDATKAMIEMNGRFLGSKPISI 490
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 5/169 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ +YV NL + E ++F+ FG V S V + E G S+G G++ A+
Sbjct: 226 RAQFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSA-VIQTDEEGNSKGFGFVNFEFHEEAQ 284
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
NA+ L ++ GR++ V + R K K+ Y+ + LY+ NL
Sbjct: 285 NAVDGLHDTEYNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVN-LYIKNLDDE 343
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ E LR F FGT+ SA+V+ D KG +++ FGF+ FSS E A++
Sbjct: 344 IDDERLRAEFEPFGTITSAKVMRDEKG-SSKGFGFVCFSSPDEATKAVA 391
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 51 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 111 NYSLIKGRACRIMWSQRDPALRKTGQG---------------NIFIKNLDEAIDNKALHD 155
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V+S +V D +G+ ++ +GF+ + +++A A ++NG + + V +
Sbjct: 156 TFAAFGNVLSCKVATDEQGR-SKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHIS 214
Query: 281 RTE 283
+ E
Sbjct: 215 KKE 217
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LY+ NL D L F+PFGT+ S +V R+ E G S+G G++ S
Sbjct: 325 EKMSKYQGVNLYIKNLDDEIDDERLRAEFEPFGTITSAKVMRD-EKGSSKGFGFVCFSSP 383
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 384 DEATKAVAEMNNKMIGAKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 433
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 348 KAVTEMNGRIVGTKPLYVALA 368
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 89/174 (51%), Gaps = 10/174 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ +G SRG G++ A+ A++ +
Sbjct: 168 IYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRD-SSGHSRGFGFVNFEKHEEAQKAVVHM 226
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G +V GR + V + R + K ++ Y+ + LYV NL ++ E L
Sbjct: 227 NGKEVSGRLLYVGRAQKRLERQNELKRRFEQMKQDRLNRYQGVN-LYVKNLDDSINDEKL 285
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
R F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 286 RKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 333
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + ++A+ AI +
Sbjct: 76 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHDAAQRAISTM 133
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V L++
Sbjct: 134 NGMLLNDRKV---FVGHFKSR-REREAELGARVMEFT-----NIYVKNLQVDVDERGLQD 184
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F E + A + +NG + GR + V
Sbjct: 185 LFSQFGKMLSVKVMRDSSGH-SRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGRAQK 243
Query: 281 RTE 283
R E
Sbjct: 244 RLE 246
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L E F P G +LS+ V R+ T S Y+ A+ A+ ++ + G+ +R+ +
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 61
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
S R+ S IF + NL ++ + L + F FG ++S +V+
Sbjct: 62 S------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYDTFSTFGNILSCKVV 106
Query: 236 HDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
D G +R FGF+ F + DA + A ++NG R + V
Sbjct: 107 CDEHG--SRGFGFVHFETHDAAQRAISTMNGMLLNDRKVFV 145
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S + +L + F P+G + S +V E G S+G G++ S A
Sbjct: 264 NRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEA 321
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 322 TKAVTEMNGRIVGTKPLYVALA 343
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + ++G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ S + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 310 LRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F P G ++S+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R +GF+ F + +A A ++NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDNVG--------GNEVDDDSSV--------EEPRSRARPCELYVCNL 107
EEA E+NGK+ G ++ S + +E +R + LYV NL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F P+GT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 348 KAVTEMNGRIVGTKPLYVALA 368
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 96/183 (52%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +S D L ++F P+G +LS +++ + + +S+G G++ + ++A AI +
Sbjct: 105 LFVKNLDKSIDNKALHDLFSPYGKILSCKIALD-VSNVSKGHGFVQFDTEDAAHTAIEKI 163
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G+ + +++ V + R PP F + ++V NLS EDL+
Sbjct: 164 NGTTLHDKQLFVGPFVRRQER--------DPPASKF-----NNVFVKNLSEITTDEDLQK 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
FG FG + SA V+ + G+ ++ FGF++F + + A+ L+GT F+ + + V
Sbjct: 211 LFGVFGPISSAVVMKEVDGK-SKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQK 269
Query: 281 RTE 283
+ E
Sbjct: 270 KNE 272
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 17/192 (8%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PRS LYV +L S + +++ ++FK G V+SV + R+ T S G Y+ +
Sbjct: 8 PRSPFASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQ 67
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A AI L+ V G+ +R+ FS S ++ L+V NL
Sbjct: 68 DASRAIEELNFMPVNGKPVRIMFSYRDPSIRKSGSG---------------NLFVKNLDK 112
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGR 271
++ + L + F +G ++S ++ D ++ GF+ F + DA A +NGT +
Sbjct: 113 SIDNKALHDLFSPYGKILSCKIALDV-SNVSKGHGFVQFDTEDAAHTAIEKINGTTLHDK 171
Query: 272 TIIVREGVDRTE 283
+ V V R E
Sbjct: 172 QLFVGPFVRRQE 183
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 3/183 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +L ++F FG + S V + + G S+ G++ + A A+ L
Sbjct: 194 VFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVD-GKSKCFGFVNFENPEDAVKAVEDL 252
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G+ +E+ V + N R +A +K +SP LY+ NL + E L++
Sbjct: 253 HGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDKSPTNLYLKNLDDGIDDEKLKD 312
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V S +V+ D G ++ GF++FS SDA A +NG + + V
Sbjct: 313 MFSAFGNVTSCKVMRDPLGH-SKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAMAQK 371
Query: 281 RTE 283
+ E
Sbjct: 372 KEE 374
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LY+ NL D +L +MF FG V S +V R+P G S+G G++ + ++A A+
Sbjct: 293 PTNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDP-LGHSKGSGFVAFSTSDAALRAV 351
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
++G +G + + V + R EA
Sbjct: 352 AQMNGKMIGSKPLYVAMAQKKEERKAKLEA 381
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 102/185 (55%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL R+ D L + F FG +LS +++ + +G+S+G G++ + SA++AI
Sbjct: 112 ANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAID 170
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + + + V R ++ + +S K + +YV NLS +V +DL
Sbjct: 171 KLNGMLLNDKPVYVGHF----QRKQDRDNALSNAKF-------NNVYVKNLSESVTDDDL 219
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
+N FG +GT+ SA V+ D G+ ++ FGF++F ++DA +A +LNG F + V +
Sbjct: 220 KNTFGEYGTITSAVVMRDVDGK-SKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKA 278
Query: 279 VDRTE 283
+ + E
Sbjct: 279 LKKYE 283
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 12/195 (6%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S A+ +YV NL S +L F +GT+ S V R+ + G S+ G++ + ++A
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAA 256
Query: 155 KNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
A+ AL+G +E V ++ ++ + R+ +++ K + LY+ N
Sbjct: 257 AEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYG----ANLYLKN 312
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDF 268
L +V E L F FGTV S ++L D +G +R GF++FS+ E AL+ +NG
Sbjct: 313 LDDSVTDEKLSELFSEFGTVTSCKILRDPQG-ISRGSGFVAFSTPEEATRALAEMNGKMV 371
Query: 269 RGRTIIVREGVDRTE 283
G+ + V + E
Sbjct: 372 AGKPLYVAPAQKKEE 386
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + LY+ NL S +L E+F FGTV S ++ R+P+ GISRG G++
Sbjct: 293 EQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQ-GISRGSGFV 351
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
+ A A+ ++G V G+ + V
Sbjct: 352 AFSTPEEATRALAEMNGKMVAGKPLYV 378
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS R+ D Q + +G+++FS+ DAA +++
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSN--PHDAAKAMD 83
Query: 265 GTDF 268
+F
Sbjct: 84 VLNF 87
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 91/165 (55%), Gaps = 9/165 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N+ ++D +L E F PFGT+ S+ +S++ E+G SRG G++ A A+ L
Sbjct: 230 VYVKNINLNWDEDKLRETFSPFGTISSIFLSKD-ESGKSRGFGFVNFEKHEDAVKAVEEL 288
Query: 162 DGSDVGGREMRV----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+ D+ G+++ V + S M S EA + +++ Y+ + L+V NL ++
Sbjct: 289 NNKDIDGQKLYVGRAQKKSERMESLKHQYEA--ARQEQLNKYQG-YNLFVKNLDDSIDDA 345
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L F +GT+ SA+V+ D G+ ++ FGF+ +SS E A++
Sbjct: 346 KLEEEFKPYGTITSAKVMLDDAGK-SKGFGFVCYSSPEEATKAIT 389
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +++ + E G S+G G++ SAK AI +
Sbjct: 137 IFIKNLHPAIDNKTLHDTFSAFGKILSCKIATD-ENGNSKGFGFVHYEESESAKAAIENV 195
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + E+ V + R LI+ ++V NL+W + LR
Sbjct: 196 NGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNI-------NLNW--DEDKLRE 246
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FGT+ S + D G+ +R FGF++F + A+ LN D G+ + V
Sbjct: 247 TFSPFGTISSIFLSKDESGK-SRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQK 305
Query: 281 RTE 283
++E
Sbjct: 306 KSE 308
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 84/189 (44%), Gaps = 17/189 (8%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ E ++ LYV L S S+L E+F P G V ++ V R+ + S G Y+
Sbjct: 35 STAESTQNSETLASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVN 94
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S + A+ L+ + + G+ R+ +S S RN I ++
Sbjct: 95 FQSHADGEKALEELNYTPIKGKACRIMWSQRDPSLRRNGSGNI---------------FI 139
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL A+ + L + F FG ++S ++ D G ++ FGF+ + S++ + A ++NG
Sbjct: 140 KNLHPAIDNKTLHDTFSAFGKILSCKIATDENG-NSKGFGFVHYEESESAKAAIENVNGM 198
Query: 267 DFRGRTIIV 275
+ V
Sbjct: 199 LLNDHEVYV 207
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEV-----------------DDDSSVEEPRSR 96
GF V E+AV +E+N KD + G ++ +++ +E ++
Sbjct: 269 GFGFVNFEKHEDAVKAVEELNNKD-IDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNK 327
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
+ L+V NL S D ++L E FKP+GT+ S +V + + G S+G G++ S A
Sbjct: 328 YQGYNLFVKNLDDSIDDAKLEEEFKPYGTITSAKVMLD-DAGKSKGFGFVCYSSPEEATK 386
Query: 157 AIIALDGSDVGGREMRVRFS 176
AI + V G+ + V +
Sbjct: 387 AITEMHQRMVAGKPLYVALA 406
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 348 KAVTEMNGRIVGTKPLYVALA 368
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 244
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 245 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 297
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 95/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 95 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 144
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 145 ELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 202
Query: 279 VDRTE 283
+ E
Sbjct: 203 QKKVE 207
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 178 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 237
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 238 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 295
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 296 TKPLYVALA 304
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 183 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 241
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 242 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 300
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ D +G+ ++ FGF+ F+ ++E A+ T+ GR +
Sbjct: 301 LRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNPESEATCAV----TELNGRVV 350
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 17/184 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L + F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTES 284
R E
Sbjct: 168 RKEQ 171
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + A A+ L
Sbjct: 287 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNPESEATCAVTEL 345
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 346 NGRVVGSKPLYVALA 360
>gi|406602740|emb|CCH45698.1| Nuclear localization sequence-binding protein [Wickerhamomyces
ciferrii]
Length = 467
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 9/180 (5%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L S D L F+P G V+S V TG SRG GY+ S ++A+ A+
Sbjct: 234 PATLFVGRLSWSIDDEWLKREFEPLGGVISARVIFERATGKSRGYGYVDFDSKSAAEKAL 293
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAV 214
G ++ GR + ++DM++ +A S + ++P L++GNLS+
Sbjct: 294 KEYQGREIDGRPI----NLDMSTGKPHASNNRSNDRASKFGDTPSAPSDTLFLGNLSFNA 349
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
++L F +G++VS R+ + + FG++ + S E AAL +LNG GR +
Sbjct: 350 NRDNLSEVFSEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEAKAALEALNGEYIEGRPV 409
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 184 RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
R E +P KK V E P L+VG LSW++ E L+ F G V+SARV+ +R +
Sbjct: 216 RKVEEEAAPAKKQKVDEEPATLFVGRLSWSIDDEWLKREFEPLGGVISARVIFERATGKS 275
Query: 244 RVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R +G++ F S + + AL +++GR I R
Sbjct: 276 RGYGYVDFDSKSAAEKALK----EYQGREIDGR 304
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 52/84 (61%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + L E+F +G+++SV + +P+T +G GY+ GS++ AK A+ AL
Sbjct: 340 LFLGNLSFNANRDNLSEVFSEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEAKAALEAL 399
Query: 162 DGSDVGGREMRVRFSIDMNSRTRN 185
+G + GR +R+ FS ++ R+
Sbjct: 400 NGEYIEGRPVRLDFSAPRDNSNRS 423
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 99/194 (51%), Gaps = 8/194 (4%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S +EE +A +YV N+ ++ E E+F PFG + S+ + ++ E G S+G G
Sbjct: 235 DRESKLEE--MKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFG 291
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ ++ G+++ V + RT + + K+ Y+
Sbjct: 292 FVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGV 351
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL + E L F FGT+ S++V+ D G+ ++ FGF+ FS+ E A++
Sbjct: 352 N-LFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGK-SKGFGFVCFSTPEEATKAIT 409
Query: 263 -LNGTDFRGRTIIV 275
+N G+ + V
Sbjct: 410 EMNQRMVNGKPLYV 423
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + + AI L
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 129 NYTPVEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 173
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ + ++ AA+ S+NG R + V + V
Sbjct: 174 TFSAFGKILSVKVATDDLGQ-SKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVS 232
Query: 281 RTE 283
+ +
Sbjct: 233 KKD 235
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 15/186 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LSV+V+ + + G S+ G++ + +A+ AI ++
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V + R E + + + +YV N+ A ++
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKA---------NYTNIYVKNIDLAYTEKEFEE 266
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV---RE 277
F FG + S + D +G+ ++ FGF++F +A A LN + G+ I V ++
Sbjct: 267 LFAPFGKITSIYLEKDAEGK-SKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQK 325
Query: 278 GVDRTE 283
+RTE
Sbjct: 326 KRERTE 331
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + L+V NL D +L E FKPFGT+ S +V + + G S+G G++ +
Sbjct: 343 EKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTP 401
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ V G+ + V + + R E I
Sbjct: 402 EEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQ 441
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++
Sbjct: 217 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVN 273
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---K 204
+ SA+ A+ L+ +V G+++ + R AE S +K E+
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVN 331
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYV NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEM 390
Query: 264 NG 265
NG
Sbjct: 391 NG 392
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G SRG ++ + +A AI A+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R E L + F +Y+ N+ V + +
Sbjct: 195 NGMLLNDKKVYVGHHVGKKERLSKVEEL----RAQFT-----NVYIKNVDLEVTDAEFED 245
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG +S + D KG ++ FGF+++ + ++ R A LN + G+ +
Sbjct: 246 LVKPFGPTISVALSRDEKG-VSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQT 304
Query: 281 RTE 283
++E
Sbjct: 305 KSE 307
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + + I ++ NL ++ + L +
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNI---------------FIKNLDQSIDNKALHD 152
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G+ +R F F+ +S+ DAA+ ++NG + + V V
Sbjct: 153 TFAAFGDILSCKVGTDENGK-SRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVG 211
Query: 281 RTE 283
+ E
Sbjct: 212 KKE 214
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 84 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 142
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 143 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 199
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 200 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 252
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 133 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 192
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 193 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 250
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 251 TKPLYVALA 259
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ S R E L ++ Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIL 358
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAITTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREVELGARAMEFT-----NIYVKNLHVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F RFG ++S +V+ D G +R FGF++F E + A + +NG + GR + V
Sbjct: 210 LFSRFGKMLSVKVMRDDSGH-SRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S R+ S IF + NL ++ + L
Sbjct: 71 TMNFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+ F FG ++S +V+ D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRRE 178
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G +G + + V +
Sbjct: 347 TKAVTEMNGRILGTKPLYVALA 368
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ D +G+ ++ FGF+ F++ +E A+ T+ GR +
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAV----TELNGRVV 352
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 40.8 bits (94), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + + A A+ L
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>gi|91786529|ref|YP_547481.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91695754|gb|ABE42583.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 134
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ EDL+ FG FG++ SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIA 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I V E
Sbjct: 63 GMNGQSLGGRSITVNE 78
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + +L + F FG++ S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQSLGGRSITVNEARPMEAR 85
>gi|398803602|ref|ZP_10562623.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398096229|gb|EJL86556.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 133
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ EDL+ FG FG++ SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIA 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I V E
Sbjct: 63 GMNGQSLGGRSITVNE 78
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + +L + F FG++ S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQSLGGRSITVNEARPMEAR 85
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ D +G+ ++ FGF+ F++ +E A+ T+ GR +
Sbjct: 303 LRVAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAPSEATCAV----TELNGRVV 352
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L + F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + + A A+ L
Sbjct: 289 LYVKNLDDTIDDDRLRVAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAPSEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 11/179 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + + F FG V +V + ++ G SRG G++ S + AK A+ AL
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG-NGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI----FVYESPHKLYVGNLSWAVKPE 217
+G+ +G +++ V + R + L+ K++ E LYV NL +V +
Sbjct: 268 NGAMLGSKKLFVGRAQKKAER----QELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDD 323
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
L+ HF G + SA+V+ G ++ FGF+ FS+ E AL +LNGT GR++ +
Sbjct: 324 KLQEHFSSCGQITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYI 381
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL S + + L ++F FG +LS +V+ E G S+ G++ S +SA A+ AL
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAE--ENGKSKCFGFVQFDSDDSATAALNAL 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+++ V + R +E + F +YV NL + + +R+
Sbjct: 177 NDTMLDGKKLFVSKFVKKCERKEASE------ETKFT-----NVYVKNLGEDLTEDIIRD 225
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V + ++ D G+ +R FGF++F S D + A +LNG + + V
Sbjct: 226 KFSEFGKVGTVVIMKDGNGK-SRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQK 284
Query: 281 RTE 283
+ E
Sbjct: 285 KAE 287
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LYV NL S D +L E F G + S +V R+ ++G+S+G G++ + A+
Sbjct: 305 KEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRH-DSGLSKGFGFVCFSTSEEAQ 363
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTR 184
A+ L+G+ + GR + + + R R
Sbjct: 364 KALTTLNGTLLHGRSLYIAMAQRKEDRQR 392
>gi|121710854|ref|XP_001273043.1| pre-mRNA splicing factor (Prp24), putative [Aspergillus clavatus NRRL
1]
gi|119401193|gb|EAW11617.1| pre-mRNA splicing factor (Prp24), putative [Aspergillus clavatus NRRL
1]
Length = 1310
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 13/175 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V N P + D S + +F +G ++ V R C Y+ S A NA+ L
Sbjct: 917 LFVTNFPSTADESYIRNLFHEYGEIIDVRFPSLKYNTHRRFC-YVQFKSAEDAHNAV-QL 974
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DGS VG ++ + I SR ++ I YE +++V N+ W +DL++
Sbjct: 975 DGSKVGS-DLNLVVKISDPSRKQDRHGPI--------YEG-REIHVSNIDWKASEDDLKD 1024
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
F ++G V + R+ G ++ FG+I FS+ E +AAL+++ +FR R + VR
Sbjct: 1025 LFSKYGRVETVRIPRKVDG-GSKGFGYIVFSTKEEANAALAMHEQEFRSRPLQVR 1078
>gi|145256511|ref|XP_001401421.1| ribosome biogenesis (Nop4) [Aspergillus niger CBS 513.88]
gi|134058324|emb|CAK38513.1| unnamed protein product [Aspergillus niger]
Length = 722
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 98/213 (46%), Gaps = 15/213 (7%)
Query: 83 EVDDDSSVEE-PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
EV D +E P S EL++ +LP S L E F + +PET S+
Sbjct: 20 EVQTDKPAQETPASNQPRRELFIRSLPASTTTESLTEYFSQSYVIKHAVAVTDPETKQSK 79
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS------IDMN--SRTRNAEALISPP 193
G G++T I AK A+ +GS G++++V ++ +D N +AEAL
Sbjct: 80 GYGFVTFADIEDAKAALEEFNGSVFEGKKIKVEYAQPRHRVVDENLGKSKPSAEALEQKK 139
Query: 194 KK--IFVYESPHKLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
K+ P KL V NL W++K P+DL F FG V V +KG FGF+
Sbjct: 140 KREEQRAAAQPPKLIVRNLPWSIKEPDDLAVLFRSFGKV--KYVTLPKKGSQLAGFGFVV 197
Query: 251 FSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282
+ AL ++NG + GRT+ V V++
Sbjct: 198 LRGKKNAEKALQAVNGKEVDGRTLAVDWAVEKN 230
>gi|115476954|ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|125561943|gb|EAZ07391.1| hypothetical protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 95/187 (50%), Gaps = 22/187 (11%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+R L N+P ++ +F G+V+ VE+S T +RG ++TMGS
Sbjct: 71 PRTR-----LIAQNIPWDCTADDMRALFGKHGSVVDVELSMYNSTR-NRGLAFVTMGSEE 124
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI--SPPKKIFVYESPHKLYVGNL 210
A +A+ L+ + + R ++V F+ R+R + ++ +P K H ++VGNL
Sbjct: 125 EALSALNHLNSTTLNDRTIKVDFT-----RSRKKQYVVPSAPMPK-------HSVFVGNL 172
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVL-HDRKGQTTRVFGFISFSSDAERDAALS-LNGTDF 268
+W V+ LR F V S V+ H + + +GF+SFSS +AA+S NGT
Sbjct: 173 TWRVRSRHLRELFASTPGVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGTKL 232
Query: 269 RGRTIIV 275
GR+I V
Sbjct: 233 MGRSINV 239
>gi|403347285|gb|EJY73063.1| RNA-binding protein 34 [Oxytricha trifallax]
Length = 412
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 112/229 (48%), Gaps = 15/229 (6%)
Query: 60 AVVDEEAVVVEDEINGKDNVGGNEVDDD-SSVEEPRSRARPCELYVCNLPRSFDISELLE 118
AVVD A V+D+ N KD ++V +EE S + +V N+P + +L++
Sbjct: 86 AVVDNSAEDVKDKSNTKDQQKTDKVKKSPEQIEEENSERKQRTTFVGNVPLETESKDLMK 145
Query: 119 MFKPFGTVLSV---EVSRNPETGISRGCGYLTM--GSINSAKNAIIALDGSDVGGREMRV 173
+FKP+G V+ + ++ + E+ I+ + G +KNA + +E +
Sbjct: 146 LFKPYGNVVKIWFRSIACDHESKITHKGKIIKKEYGLQKDSKNAYVLF-----KTKESAI 200
Query: 174 RFSIDMNS-RTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
+ + ++N + N + + Y++ +++GNL W + EDLR HF G +++
Sbjct: 201 KAAENLNQIQLGNKHLRVDTENQENDYDTT--IFIGNLPWVLNDEDLRAHFEDCGKILNV 258
Query: 233 RVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
RV+ D+ + ++ F + E R + + N + FRGR + +++ V+
Sbjct: 259 RVVRDKDNFIGKGIAYVQFKTKEEMRKSIETKNRSLFRGRELRIKKAVE 307
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L + F+ GTV++ V + +G SRG Y+ S A+ A+ +
Sbjct: 112 VFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVEEM 171
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-----ESPHKLYVGNLSWAVKP 216
+G + GRE+ V S R N E K+ V+ + L+VGNLSW
Sbjct: 172 NGKQIDGREVNVDIS---QPRQPNPE------KRAQVFGDSESQPSTTLFVGNLSWNTTE 222
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L FG FG V R+ D++ + FG++ F + A ++ G D GRT+
Sbjct: 223 DGLWTAFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKAYEAMKGKDLDGRTL 280
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++VG LSW V + L F GTVV+ARV DR +R F ++ FSS AE A+ +
Sbjct: 112 VFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVEEM 171
Query: 264 NGTDFRGRTIIV 275
NG GR + V
Sbjct: 172 NGKQIDGREVNV 183
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 21/139 (15%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-------------SRARP- 99
GF V EA +E+NGK + G EV+ D + +PR S ++P
Sbjct: 152 GFAYVEFSSPAEAQKAVEEMNGK-QIDGREVNVD--ISQPRQPNPEKRAQVFGDSESQPS 208
Query: 100 CELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
L+V NL S++ +E L F FG V V + + E+G +G GY+ G A A
Sbjct: 209 TTLFVGNL--SWNTTEDGLWTAFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKA 266
Query: 158 IIALDGSDVGGREMRVRFS 176
A+ G D+ GR +R+ +S
Sbjct: 267 YEAMKGKDLDGRTLRLDYS 285
>gi|350631988|gb|EHA20356.1| hypothetical protein ASPNIDRAFT_44327 [Aspergillus niger ATCC 1015]
Length = 722
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 98/213 (46%), Gaps = 15/213 (7%)
Query: 83 EVDDDSSVEE-PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
EV D +E P S EL++ +LP S L E F + +PET S+
Sbjct: 20 EVQTDKPAQETPASNQPRRELFIRSLPASTTTESLTEYFSQSYVIKHAVAVTDPETKQSK 79
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS------IDMN--SRTRNAEALISPP 193
G G++T I AK A+ +GS G++++V ++ +D N +AEAL
Sbjct: 80 GYGFVTFADIEDAKAALEEFNGSVFEGKKIKVEYAQPRHRVVDENLGKSKPSAEALEQKK 139
Query: 194 KK--IFVYESPHKLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
K+ P KL V NL W++K P+DL F FG V V +KG FGF+
Sbjct: 140 KREEQRAAAQPPKLIVRNLPWSIKEPDDLAVLFRSFGKV--KYVTLPKKGSQLAGFGFVV 197
Query: 251 FSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282
+ AL ++NG + GRT+ V V++
Sbjct: 198 LRGKKNAEKALQAVNGKEVDGRTLAVDWAVEKN 230
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N F +L E+F FG LSV V ++ E G SRG G++ A+ A+ +
Sbjct: 193 VYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKD-EKGRSRGFGFVNYAHHEDAQKAVNEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+ + V + R + K +I Y+ + LYV NL ++ E L
Sbjct: 252 NGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVN-LYVKNLDDSIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R F +GT+ SA+V+ D G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 311 RKEFAPYGTITSAKVMTD--GSQSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + N+ ++ + L +
Sbjct: 73 NYDVIKGRPIRIMWS------QRDPGLRKSGVGNIF---------IKNMDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D KG ++ +GF+ F + +A A ++NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDEKG--SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
R + LYV NL S D L + F P+GT+ S +V + S+G G++ S A
Sbjct: 289 QRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGSQ--SKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G V + + V +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L E F FG +LS +++ + ETG S+G G++ +SAK AI AL
Sbjct: 125 IFIKNLHPDIDNKALFETFSVFGNILSSKIATD-ETGKSKGFGFVHFEHESSAKEAIDAL 183
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R E K F +YV N++ E+
Sbjct: 184 NGMLLNGQEIYVAPHLTRKERDSQLEET----KAHFT-----NVYVKNINLETTDEEFNE 234
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F ++G V+S+ + G+ + FGF+ F + A+ LNGT+F+ +T+ V
Sbjct: 235 LFAKYGNVLSSSLEKTEDGK-LKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQK 293
Query: 281 RTE 283
+ E
Sbjct: 294 KYE 296
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 19/187 (10%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV L + + L ++F P G+V S+ V R+ T S G Y+ + K AI
Sbjct: 34 PASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAVTKTSLGYAYVNFNDHEAGKKAI 93
Query: 159 IALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
L+ + + GR R+ +S D R + + +++ NL + +
Sbjct: 94 EQLNYTPIKGRLCRIMWSQRDPALRKKGS----------------GNIFIKNLHPDIDNK 137
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVR 276
L F FG ++S+++ D G+ ++ FGF+ F ++ ++A +LNG G+ I V
Sbjct: 138 ALFETFSVFGNILSSKIATDETGK-SKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVA 196
Query: 277 EGVDRTE 283
+ R E
Sbjct: 197 PHLTRKE 203
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 7/178 (3%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A +YV N+ E E+F +G VLS + + E G +G G++
Sbjct: 205 DSQLEE--TKAHFTNVYVKNINLETTDEEFNELFAKYGNVLSSSLEKT-EDGKLKGFGFV 261
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
A A+ L+G++ + + V + R + + + K+ Y+ +
Sbjct: 262 DFEKHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVN- 320
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L+V NL ++ E L+ F +GT+ S RV+ G+ ++ FGF+ FS+ E A++
Sbjct: 321 LFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRTDNGK-SKGFGFVCFSTPEEATKAIT 377
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
++S E ++ + L+V NL S D +L E F P+GT+ SV V R + G S+G G++
Sbjct: 306 EASRLEKMAKYQGVNLFVKNLDDSIDDEKLKEEFAPYGTITSVRVMRT-DNGKSKGFGFV 364
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
+ A AI + V G+ + V
Sbjct: 365 CFSTPEEATKAITEKNQQIVAGKPLYV 391
>gi|242082447|ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
gi|241942342|gb|EES15487.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
Length = 266
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 94/188 (50%), Gaps = 21/188 (11%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+R L N+P E+ +F+ G+V+ VE+S + +RG ++TMGS
Sbjct: 70 PRTR-----LVAQNIPWDSTADEMRALFQTHGSVVGVELSMYSASK-NRGLAFVTMGSEE 123
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY---VGN 209
A A+ L+ + + R+++V F +R R + PK+ V +P + Y VGN
Sbjct: 124 DALAALTHLNSTILNDRKIKVDF-----ARPRKKQ-----PKQPVVVSNPMEKYIVFVGN 173
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVL-HDRKGQTTRVFGFISFSSDAERDAALS-LNGTD 267
L+W V+ LR F V+SA V+ H + + + F+SFSS +AA+S NG
Sbjct: 174 LTWRVRNRHLRELFASAPGVISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISAFNGKI 233
Query: 268 FRGRTIIV 275
GR I V
Sbjct: 234 LMGRPINV 241
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F+ FG LSV+V R+ + G S+G G++ A+NAI +
Sbjct: 292 VYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRD-DCGRSKGFGFVNFQKHEDAQNAIDNM 350
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ GR++ R + ++ ++ R+ E L +I Y+ + LY+ NL + E
Sbjct: 351 NGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQ--NRIVRYQGVN-LYIKNLDDDIDDE 407
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
+LR F FGT+ SA+V+ + ++ FGF+ FS+ E A+ T+ GR +
Sbjct: 408 NLRKEFSSFGTITSAKVMMN--NGRSKGFGFVCFSAPEEATTAV----TEMNGRLV 457
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 20/176 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ + A+ + +
Sbjct: 112 LYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTDM 171
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ ++V NL ++ + L +
Sbjct: 172 NLYIIKGKPVRLMWSQRDPSLRKSGIG---------------NVFVKNLEKSINNKSLYD 216
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F AER A +NG I V
Sbjct: 217 AFSSFGNILSCKVITDDNG--SKGYGFVHFEHRESAER-AIQKMNGILLNDLKIFV 269
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LY+ NL D L + F FGT+ S +V N G S+G G++ + A
Sbjct: 389 RYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVMMN--NGRSKGFGFVCFSAPEEAT 446
Query: 156 NAIIALDGSDVGGREMRV 173
A+ ++G V + + V
Sbjct: 447 TAVTEMNGRLVASKPLYV 464
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 14/177 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D L E F FG+VLS +V+ + G S+G G++ + +A++AI
Sbjct: 121 ANVFIKNLDTSIDNKALQETFASFGSVLSCKVAVD-NNGQSKGYGFVQFENEEAAQSAIN 179
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +E+ V + R EA SP F +YV NLS EDL
Sbjct: 180 RLNGMLINDKEVFVGRFVRHQERI---EATGSPK---FT-----NVYVKNLSETTSDEDL 228
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
+ F +G + SA V+ D+ G+ ++ FGF++F S D+ A LNGT F + V
Sbjct: 229 KKFFSNYGAITSAIVMKDQSGK-SKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYV 284
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 32/198 (16%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L + F +G + S V ++ ++G S+G G++ S +SA A+ L
Sbjct: 214 VYVKNLSETTSDEDLKKFFSNYGAITSAIVMKD-QSGKSKGFGFVNFQSPDSAAAAVEKL 272
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G+ + E++ RF + NSR +A LY
Sbjct: 273 NGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAA--------------NLY 318
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ NL + E L+ F FG++ S +V+ D++G ++ GF++FS+ E AL+ +NG
Sbjct: 319 LKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQG-LSKGSGFVAFSTPEEASRALNGMNG 377
Query: 266 TDFRGRTIIVREGVDRTE 283
+ + V R E
Sbjct: 378 KMIGKKPLYVAVAQRREE 395
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 80 GGNEVDDDSSVEEPRS----RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
G E + + E+ R+ + + LY+ NL D +L E+F FG++ S +V +
Sbjct: 291 GEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLD- 349
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
+ G+S+G G++ + A A+ ++G +G + + V
Sbjct: 350 QQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYV 387
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 213 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 271
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 272 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 328
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 329 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 381
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 178
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 179 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 228
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279
FG+FG +S +V+ D G+ ++ FGF+SF + A+ +NG + G+ I V
Sbjct: 229 ELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 287
Query: 280 DRTE 283
+ E
Sbjct: 288 KKVE 291
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R +R
Sbjct: 252 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 311
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL D L + F PFGT+ S +V E G S+G G++ S A A
Sbjct: 312 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 369
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G V + + V +
Sbjct: 370 VTEMNGRIVATKPLYVALA 388
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG VLS +V+ + E G S+G G++ + +A+NAI ++
Sbjct: 137 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGNSKGYGFVHYETAEAAENAIKSV 195
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R ++ I K + +YV NL + E
Sbjct: 196 NGMLLNDKKVFVGHHIPRKER----QSKIDEMKAQYT-----NIYVKNLDPELGQEGFEE 246
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
FG+FG + SA + D +G+ +R FGF++F S + AA+ +L+ T+ GR + V
Sbjct: 247 LFGKFGNITSAALSKDEEGK-SRGFGFVNFESHEQAAAAVETLHDTEINGRKLYVARAQK 305
Query: 281 RTE 283
++E
Sbjct: 306 KSE 308
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 83/169 (49%), Gaps = 5/169 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A+ +YV NL E+F FG + S +S++ E G SRG G++ S A
Sbjct: 224 KAQYTNIYVKNLDPELGQEGFEELFGKFGNITSAALSKD-EEGKSRGFGFVNFESHEQAA 282
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ L +++ GR++ V + + R K K+ Y+ + LY+ NL
Sbjct: 283 AAVETLHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVN-LYIKNLEDD 341
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ E LR F FGT+ S +V+ D K T++ FGF+ FSS E A+S
Sbjct: 342 IDDEKLRAEFEPFGTITSCKVMRDEKN-TSKGFGFVCFSSPDEATKAVS 389
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 49 LYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQL 108
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + +++ NL + + L +
Sbjct: 109 NYSLIKNRACRIMWSQRDPALRKTGQG---------------NIFIKNLDEQIDNKALHD 153
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V+S +V D G ++ +GF+ + +++A +A S+NG + + V +
Sbjct: 154 TFAAFGNVLSCKVATDEHG-NSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIP 212
Query: 281 RTE 283
R E
Sbjct: 213 RKE 215
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+++ +E S+ + LY+ NL D +L F+PFGT+ S +V R+ E S+G G++
Sbjct: 318 ENAKQEKLSKYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVMRD-EKNTSKGFGFV 376
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
S + A A+ ++ +G + + V + R + E I+ +I + ++
Sbjct: 377 CFSSPDEATKAVSEMNNKMIGSKPLYVSLAQRREVRRQQLETQIAQRNQIRMQQA 431
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ D +G+ ++ FGF+ F++ +E A+ T+ GR +
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAV----TELNGRVV 352
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L + F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + + A A+ L
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D +L + F P+G + S +V E G S+G G++ S A A+ +
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 354 NGRIVGTKPLYVALA 368
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +++ NL F +L +MFKPFG ++S +S E G+S+G ++
Sbjct: 228 SKVEE--QRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLSKGFAFVN 284
Query: 148 MGSINSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESP 202
+ ++AK A+ L+ ++ G+++ V R D R + E + K +
Sbjct: 285 YTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKT----AG 340
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAAL 261
LYV N+ + LR+ F GT+ SA+V+ D KG +R FGF+ FS D A
Sbjct: 341 VNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKG-ASRGFGFVCFSQPDEATRAVQ 399
Query: 262 SLNG 265
+NG
Sbjct: 400 EMNG 403
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +V+ + E G SRG ++ + +A AI ++
Sbjct: 147 IFIKNLDDKIDNKALHDTFAAFGNILSCKVATD-ENGNSRGFAFVHYETGEAADAAIKSV 205
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + IF+ NL +DL +
Sbjct: 206 NGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIK---------NLEPEFTQKDLED 256
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG +VSA + G ++ F F+++++ DA + A LN + G+ + V
Sbjct: 257 MFKPFGEIVSAALSVGEDG-LSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQK 315
Query: 281 RTE 283
R E
Sbjct: 316 RAE 318
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 59 LYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 118
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 119 NYSLIKNRPCRIMWSQRDPALRKTGQGNI---------------FIKNLDDKIDNKALHD 163
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R F F+ + + DAA+ S+NG + + V +
Sbjct: 164 TFAAFGNILSCKVATDENG-NSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHIS 222
Query: 281 RTE 283
+ E
Sbjct: 223 KKE 225
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI A+
Sbjct: 147 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETAEAANNAIKAV 205
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V ++ R
Sbjct: 206 NGMLLNEKKVFVGHHIPKKDRMSKFEEM----KANFT-----NVYVKNIDLEVTDDEFRE 256
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G + SA + HD + +R FGF++F ++ A LN D++G+ + V
Sbjct: 257 LFEKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQK 316
Query: 281 RTE 283
+ E
Sbjct: 317 KHE 319
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD + S EE +A +YV N+ E E+F
Sbjct: 209 LLNEKKVFVGHHIPKKDRM--------SKFEE--MKANFTNVYVKNIDLEVTDDEFRELF 258
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S ++ + ETG SRG G++ SA A+ L+ D G+++ V + +
Sbjct: 259 EKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKH 318
Query: 181 SRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
R + EA + +K Y+ + LYV NL V E LR+ F FGT+ SA+V+
Sbjct: 319 EREEELRKQYEAARA--EKQSKYQGVN-LYVKNLHDDVDDEKLRDMFAPFGTITSAKVMR 375
Query: 237 D 237
D
Sbjct: 376 D 376
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 17/184 (9%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P + LYV L S + L E+F G V S+ V R+ T S G Y+ S +
Sbjct: 50 PSAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSD 109
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ A+ L+ + + G+ R+ +S + + + +++ NL
Sbjct: 110 DGEKALEELNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDG 154
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGR 271
A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A ++NG +
Sbjct: 155 AIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETAEAANNAIKAVNGMLLNEK 213
Query: 272 TIIV 275
+ V
Sbjct: 214 KVFV 217
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG----------NEVDDD------SSVEEPRSRA 97
GF V V E A DE+N KD G +E +++ ++ E +S+
Sbjct: 280 GFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKY 339
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
+ LYV NL D +L +MF PFGT+ S +V R+
Sbjct: 340 QGVNLYVKNLHDDVDDEKLRDMFAPFGTITSAKVMRD 376
>gi|345491945|ref|XP_001599982.2| PREDICTED: nucleolar protein 12-like [Nasonia vitripennis]
Length = 613
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 90/192 (46%), Gaps = 35/192 (18%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEV-----------------SRNPETGISRGCG 144
+YV N+P+ + + ++F+PFG + S+ V ++ +S
Sbjct: 334 IYVGNVPKEMTVKTIKKLFRPFGEIDSIRVRGVVAEDSRMSAKVATITKKMHPKVSTVYV 393
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
Y+ SAK+A+ L+G +G +RV S T+N + ++
Sbjct: 394 YVAFKEEQSAKDAL-KLNGHKLGENTLRVDLS------TKNKD-----------HDQKRA 435
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
+++GN+ + + +++R HF G + S R++ DRK +R G+++F + AL LN
Sbjct: 436 VFLGNIPFDITEDEVRKHFDSCGKIESVRIVKDRKSGLSRGIGYVNFENQDSVTLALELN 495
Query: 265 GTDFRGRTIIVR 276
GT+ + R I V+
Sbjct: 496 GTNLKNREIRVQ 507
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSR-NPETGISRGCGYLTMGSINSAKNAIIAL 161
YV N+P + ++LL+ F+PFG VLS V + N +RG G++ ++A A+ AL
Sbjct: 225 YVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDAL 284
Query: 162 DGSDVGG-----REMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAV 214
+G EM V + + R R K +I Y+ + LYV NL +
Sbjct: 285 NGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVN-LYVKNLDDQL 343
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 273
++LR F GT+ S+RV+ D G +R FGF+ FS+ E + A++ +NG G+ +
Sbjct: 344 SDDELREAFAECGTITSSRVMRDPNG-NSRGFGFVCFSTPEEANKAVAEMNGKLISGKPV 402
Query: 274 IV 275
V
Sbjct: 403 YV 404
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D L + F FG +LS +V+ TG S+G GY+ + +A AI +
Sbjct: 135 IFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKI 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G E+ F R +A + YV N+ DL
Sbjct: 195 NGMLIAGTEV---FVGQFQKRQDRPDA-----------DDWTNCYVKNIPTQWTDADLLK 240
Query: 222 HFGRFGTVVSARVLHDRKG-QTTRVFGFISF-SSDAERDAALSLNGTDF 268
F FG V+SA V+ D R FGF+++ SDA A +LNG +
Sbjct: 241 EFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSY 289
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 22/159 (13%)
Query: 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRA------------- 97
H GF V + A D +NGK G +D + V + + R+
Sbjct: 262 HNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQL 321
Query: 98 --------RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
+ LYV NL EL E F GT+ S V R+P G SRG G++
Sbjct: 322 KMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDP-NGNSRGFGFVCFS 380
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
+ A A+ ++G + G+ + V + R EA
Sbjct: 381 TPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEA 419
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV ++ + L E+F G V S+ V R+ T S G Y+ ++ A+ A+ +
Sbjct: 47 LYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTM 106
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G R+ +S S ++ ++V NL ++ + L +
Sbjct: 107 NFTSIKGVPCRIMWSQRDPSLRKSGVG---------------NIFVKNLDTSIDNKALYD 151
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V + ++ +G++ +
Sbjct: 152 TFSLFGNILSCKVAIEHTTGNSKGYGYVHY 181
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L E F PFG ++S +V + E S+G G++ +A AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG--SKGYGFVHYQDQRAADRAIEEM 157
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + + V RF + + R AE P + VY + N + E LR
Sbjct: 158 NGKLLRDSTLFVARFK---SRKDREAELREKPAEFTNVY-------IKNFGDDMDDESLR 207
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
+ F ++G +S +V+ D G++ R FGF+SF S A ++A +NG D G+TI V
Sbjct: 208 SVFSKYGQTLSVKVMKDASGKSKR-FGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQ 266
Query: 280 DRTE 283
+ E
Sbjct: 267 KKVE 270
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 7/166 (4%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E R +P E +Y+ N D L +F +G LSV+V ++ +G S+ G+++
Sbjct: 179 EAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSF 237
Query: 149 GSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S +AKNA+ ++G D+ G+ + V R + + E K+ KLY+
Sbjct: 238 DSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYI 297
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
NL + E LR F FG++ +V+ + GQ ++ FG I F S
Sbjct: 298 KNLDDTIDDETLRKEFSVFGSICRVKVMQE-AGQ-SKGFGLICFFS 341
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ + S G GY+ + A
Sbjct: 5 TKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALETMNFDLIKGKSIRLMWS------QRDACLRKSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G ++ +GF+ + D A+ +NG R T+
Sbjct: 110 DNKTLYEHFSPFGKIMSSKVMTDEEG--SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTL 167
Query: 274 IV 275
V
Sbjct: 168 FV 169
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|241766569|ref|ZP_04764426.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
gi|241363173|gb|EER58764.1| RNP-1 like RNA-binding protein [Acidovorax delafieldii 2AN]
Length = 116
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQPLGGRSIVVNE 78
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S S+L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSIVVNEARPMEPR 85
>gi|326319545|ref|YP_004237217.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376381|gb|ADX48650.1| RNP-1 like RNA-binding protein [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 172
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQALGGRSIVVNE 78
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S ++L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQALGGRSIVVNEARPMEPR 85
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSR-NPETGISRGCGYLTMGSINSAKNAIIAL 161
YV N+P + ++LL+ F+PFG VLS V + N +RG G++ ++A A+ AL
Sbjct: 171 YVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDAL 230
Query: 162 DGSDVGG-----REMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAV 214
+G EM V + + R R K +I Y+ + LYV NL +
Sbjct: 231 NGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVN-LYVKNLDDQL 289
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTI 273
++LR F GT+ S+RV+ D G +R FGF+ FS+ E + A++ +NG G+ +
Sbjct: 290 SDDELREAFAECGTITSSRVMRDPNG-NSRGFGFVCFSTPEEANKAVAEMNGKLISGKPV 348
Query: 274 IV 275
V
Sbjct: 349 YV 350
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D L + F FG +LS +V+ TG S+G GY+ + +A AI +
Sbjct: 81 IFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKI 140
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G E+ F R +A + YV N+ DL
Sbjct: 141 NGMLIAGTEV---FVGHFQKRQDRPDA-----------DDWTNCYVKNIPTQWTDADLLK 186
Query: 222 HFGRFGTVVSARVLHDRKG-QTTRVFGFISF-SSDAERDAALSLNGTDF 268
F FG V+SA V+ D R FGF+++ SDA A +LNG +
Sbjct: 187 EFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNGKSY 235
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 22/159 (13%)
Query: 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRA------------- 97
H GF V + A D +NGK G +D + V + + R+
Sbjct: 208 HNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQL 267
Query: 98 --------RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
+ LYV NL EL E F GT+ S V R+P G SRG G++
Sbjct: 268 KMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDP-NGNSRGFGFVCFS 326
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
+ A A+ ++G + G+ + V + R EA
Sbjct: 327 TPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEA 365
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ ETG S+G G++ + +A AI +
Sbjct: 152 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-ETGASKGYGFVHYETDEAASQAIKHV 210
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R
Sbjct: 211 NGMLLNEKKVFVGHHIPKKDRQSKFEEM----KANFT-----NIYVKNIPVEATDEEFRE 261
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG V SA + D +R FGF++F + A+ LNG DF+G+ + V
Sbjct: 262 LFEKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQDLYVGRAQK 321
Query: 281 RTE 283
+ E
Sbjct: 322 KHE 324
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 13/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+P E E+F
Sbjct: 214 LLNEKKVFVGHHIPKKDR--------QSKFEE--MKANFTNIYVKNIPVEATDEEFRELF 263
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ FG V S ++R+ ++ SRG G++ + A A+ L+G D G+++ V + +
Sbjct: 264 EKFGDVTSASLARDTDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQDLYVGRAQKKH 323
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LYV NL V + LR F FG++ SA+V+ D
Sbjct: 324 EREEELRKSYEAARIEKASKYQGVN-LYVKNLDDDVDDDKLRELFTPFGSITSAKVMRD 381
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 20/189 (10%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ P++ A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 53 SAAPHPQASA---SLYVGELDSSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 109
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ + A+ L+ + + GR R+ +S + + + +++
Sbjct: 110 YNTTIDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 154
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A +NG
Sbjct: 155 KNLDTAIDNKALHDTFAAFGNILSCKVAQDETG-ASKGYGFVHYETDEAASQAIKHVNGM 213
Query: 267 DFRGRTIIV 275
+ + V
Sbjct: 214 LLNEKKVFV 222
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL D L +F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNLGEDMDDERLQGLFSKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT----------RNAEALISPPKKIFVYESPHKLYVGNL 210
+G D+ G+++ V R + +T ++ + P+ I V LYV NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNL 311
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRG 270
+ E LR F FGT+ SA+V + G ++ FGF+ FSS E A+ T+ G
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAV----TEMNG 365
Query: 271 RTIIVR 276
R + +
Sbjct: 366 RIVATK 371
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S G + + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIF---------VKNLDRSIDSKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F + E + A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFV 170
>gi|258578315|ref|XP_002543339.1| hypothetical protein UREG_02855 [Uncinocarpus reesii 1704]
gi|237903605|gb|EEP78006.1| hypothetical protein UREG_02855 [Uncinocarpus reesii 1704]
Length = 582
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 7/182 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL+ F+ G V ++ ++ +G S+G GY+ + S AI L
Sbjct: 197 VFVQQLAARLRTKELIAFFEKAGPVKDAQIVKDRVSGRSKGVGYVEFKNEESVPVAI-QL 255
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + +F+ + N RNAE +S + + H+LYVGN+ +++ DL+
Sbjct: 256 TGQKLLGIPIIAQFTEAEKNKAARNAEGHVSGNQNSIPF---HRLYVGNIHFSITESDLQ 312
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ D G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 313 NVFEPFGELDFVQLQKDENGR-SRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVGLGN 371
Query: 280 DR 281
D+
Sbjct: 372 DK 373
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 14/184 (7%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +++ NL F +L +MFKPFG ++S +S E G+S+G ++
Sbjct: 228 SKVEE--QRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLSKGFAFVN 284
Query: 148 MGSINSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESP 202
+ ++AK A+ L+ ++ G+++ V R D R + E + K +
Sbjct: 285 YTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKT----AG 340
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAAL 261
LYV N+ + LR+ F GT+ SA+V+ D KG +R FGF+ FS D A
Sbjct: 341 VNLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKG-ASRGFGFVCFSQPDEATRAVQ 399
Query: 262 SLNG 265
+NG
Sbjct: 400 EMNG 403
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +V+ + E G SRG ++ + +A AI ++
Sbjct: 147 IFIKNLDDKIDNKALHDTFAAFGNILSCKVATD-ENGNSRGFAFVHYETGEAADAAIKSV 205
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + IF+ NL +DL +
Sbjct: 206 NGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIK---------NLEPEFTQKDLED 256
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG +VSA + G ++ F F+++++ DA + A LN + G+ + V
Sbjct: 257 MFKPFGEIVSAALSVGEDG-LSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQK 315
Query: 281 RTE 283
R E
Sbjct: 316 RAE 318
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 59 LYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 118
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 119 NYSLIKNRPCRIMWSQRDPALRKTGQGNI---------------FIKNLDDKIDNKALHD 163
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R F F+ + + DAA+ S+NG + + V +
Sbjct: 164 TFAAFGNILSCKVATDENG-NSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHIS 222
Query: 281 RTE 283
+ E
Sbjct: 223 KKE 225
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 14/177 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D L E F FG VLS +V+ + G S+G G++ + +A++AI
Sbjct: 111 ANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVD-NNGQSKGYGFVQFENEEAAQSAIN 169
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +E+ V + R EA SP F +YV NLS EDL
Sbjct: 170 RLNGMLINDKEVFVGRFVRHQERI---EATGSPK---FT-----NVYVKNLSETTSDEDL 218
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
+ F +G++ SA V+ D+ G+ ++ FGF++F S D+ A LNGT F + V
Sbjct: 219 KKFFSNYGSITSAIVMKDQSGK-SKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYV 274
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 92/198 (46%), Gaps = 32/198 (16%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L + F +G++ S V ++ ++G S+G G++ S +SA A+ L
Sbjct: 204 VYVKNLSETTSDEDLKKFFSNYGSITSAIVMKD-QSGKSKGFGFVNFQSPDSAAAAVEKL 262
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G+ + E++ RF + NSR +A LY
Sbjct: 263 NGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAA--------------NLY 308
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ NL + E L+ F FG++ S +V+ D++G ++ GF++FS+ E AL+ +NG
Sbjct: 309 LKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQG-LSKGSGFVAFSTPEEASRALNGMNG 367
Query: 266 TDFRGRTIIVREGVDRTE 283
+ + V R E
Sbjct: 368 KMIGKKPLYVAVAQRREE 385
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 80 GGNEVDDDSSVEEPRS----RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
G E + + E+ R+ + + LY+ NL D +L E+F FG++ S +V +
Sbjct: 281 GEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLD- 339
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
+ G+S+G G++ + A A+ ++G +G + + V
Sbjct: 340 QQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYV 377
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 154 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHV 212
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ V ++ R+
Sbjct: 213 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NIYVKNIANEVTDDEFRD 263
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V S+ + D++G+ +R FGF++F++ +A A LNG DFRG+ + V
Sbjct: 264 LFTAFGDVTSSSLARDQEGK-SRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQK 322
Query: 281 RTE 283
+ E
Sbjct: 323 KHE 325
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ E ++F
Sbjct: 216 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNIYVKNIANEVTDDEFRDLF 265
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
FG V S ++R+ E G SRG G++ + +A A+ L+G D G+++ V + +
Sbjct: 266 TAFGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKH 324
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NL V E LR F FG + SA+V+ D
Sbjct: 325 EREEELRKSYEAARMEKASKYQGVN-LYIKNLDDEVDDEKLRQLFADFGPITSAKVMRD 382
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ P++ A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 55 SAAPHPQASA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 111
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ + + A+ L+ + + GR R+ +S + + + +++
Sbjct: 112 YNTTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 156
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A +NG
Sbjct: 157 KNLDVAIDNKALHDTFAAFGNILSCKVAQDEHG-NSKGYGFVHYETDEAASQAIKHVNGM 215
Query: 267 DFRGRTIIV 275
+ + V
Sbjct: 216 LLNEKKVYV 224
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL RS D L + F FG +LS +V + E G S+G G++ + A+ AI +
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEEAERAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + ++ V RF + R R AE + K F +Y+ NL + E L+
Sbjct: 159 NGMFLNDHKVFVGRFK---SRRDRQAE--LGARAKEFT-----NVYIKNLGEDMDDERLQ 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGV 279
+ FGRFG +S +V+ D G+ ++ FGF+SF + R A +NG D G+ I V
Sbjct: 209 DLFGRFGPALSVKVMTDESGK-SKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISP--------PKKIFVYESPHKLYVGNL 210
+G D+ G+++ R + ++ + ++ + P+ V LYV NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNL 311
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V + G ++ FGF+ FSS E A++ +NG
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEMNG 365
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G + + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDRSIDSKTLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F + E + A+ +NG + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFV 170
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 93/184 (50%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL RS D L + F FG +LS +V + E G S+G G++ + A+ AI +
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEEAERAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + ++ V RF + R R AE + K F +Y+ NL + E L+
Sbjct: 159 NGMFLNDHKVFVGRFK---SRRDRQAE--LGARAKEFT-----NVYIKNLGEDMDDERLQ 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGV 279
+ FGRFG +S +V+ D G+ ++ FGF+SF + R A +NG D G+ I V
Sbjct: 209 DLFGRFGPALSVKVMTDESGK-SKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISP--------PKKIFVYESPHKLYVGNL 210
+G D+ G+++ R + ++ + ++ + P+ V LYV NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNL 311
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ E LR F FGT+ SA+V + G ++ FGF+ FSS E A++ +NG
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEMNG 365
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G + + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDRSIDSKTLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F + E + A+ +NG + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFV 170
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N+ + E E+F PFG V S + R+ E G SRG G++ + A+ A+ L
Sbjct: 235 VYVKNIDPEANDDEFRELFTPFGNVTSAVLQRD-EEGRSRGFGFVNFETHEEAQKAVDTL 293
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
SD GR++ V + + R K K+ Y+ + LY+ NL V E L
Sbjct: 294 HDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVN-LYIKNLEDDVDDEKL 352
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
R+ F FG + SA+V+ +G T++ FGF+ FSS E A++
Sbjct: 353 RDAFEPFGAITSAKVMRT-EGGTSKGFGFVCFSSPDEATKAVA 394
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 54 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQL 113
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S + + + I ++ NL A+ + L +
Sbjct: 114 NYSLIKGRACRIMWSQRDPALRKTGQGNI---------------FIKNLDDAIDNKALHD 158
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG V+S +V D G+ ++ +GF+ + ++ ++A+ ++NG + + V V
Sbjct: 159 TFAAFGNVLSCKVATDEMGR-SKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVS 217
Query: 281 RTE 283
+ +
Sbjct: 218 KKD 220
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LY+ NL D +L + F+PFG + S +V R E G S+G G++ S
Sbjct: 328 EKMSKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSAKVMRT-EGGTSKGFGFVCFSSP 386
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 387 DEATKAVAEMNNKMMGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 436
>gi|343475725|emb|CCD12959.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 369
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++CNL D S L +F +G ++S V RN TG S G ++ + A+ A+ AL
Sbjct: 26 LFICNLSPGVDESALKRIFSAYGEIVSAAVMRNIHTGESLGTAFVRFATTEQAQRAMEAL 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GS GR M V+++ + T EA KKI KL+V N+ V E++R
Sbjct: 86 TGSMQEGRAMIVQWAKRQHDDTPVGEAR----KKIV------KLFVRNIPLDVGAEEVRR 135
Query: 222 HFGRFGTVVS-------ARVLHDRKGQTTRVFGFISFSSDAERDAA 260
F RFG V S A H GQ R F++F ++ D A
Sbjct: 136 LFERFGAVESVTLHKDTAAASHADVGQPLRRIAFVTFVAEGVADRA 181
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 208 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 266
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 267 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 323
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 324 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 376
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 93/184 (50%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 116 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 173
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 174 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 223
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279
FG+FG +S +V+ D G+ ++ FGF+SF + A+ +NG + G+ I V
Sbjct: 224 ELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 282
Query: 280 DRTE 283
+ E
Sbjct: 283 KKVE 286
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 257 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 316
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 317 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 374
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 375 TKPLYVALA 383
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A+ LYV N E ++F+ G ++S V R+ ++G SRG G+++ + +A+
Sbjct: 197 AKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRD-DSGKSRGFGFVSYETHEAAQK 255
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ L+ + R M V + + R+ R E K F LYV NL
Sbjct: 256 AVETLNEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRF---QGVNLYVKNLDD 312
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT 272
+ LR F FGT+ SA+V+ D KG +R FGF+ FSS E A+ T+ GR
Sbjct: 313 VIDDAKLRQEFANFGTITSAKVMSDEKG-ISRGFGFVCFSSPEEATKAV----TEMNGRI 367
Query: 273 IIVR 276
II +
Sbjct: 368 IISK 371
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D + + F FG +LS +++ + E G S+G ++ + +A AI +
Sbjct: 109 IFIKNLEKDIDNKAIYDTFSAFGNILSCKIALD-ENGNSKGYAFVHFETQEAANRAIEKV 167
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ F SR E + + K LYV N + ++ R+
Sbjct: 168 NGMLLSGKKV---FVGHFMSRKERMEKIGNLAAKY------TNLYVKNFRDDISDDEFRD 218
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F + G +VS V+ D G+ +R FGF+S+ + +A + A +LN +F R + V
Sbjct: 219 LFEQCGKIVSCVVMRDDSGK-SRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQK 277
Query: 281 RTE 283
++E
Sbjct: 278 KSE 280
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R + LYV NL D ++L + F FGT+ S +V + E GISRG G++ S
Sbjct: 294 QEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSD-EKGISRGFGFVCFSS 352
Query: 151 INSAKNAIIALDG 163
A A+ ++G
Sbjct: 353 PEEATKAVTEMNG 365
>gi|406700097|gb|EKD03282.1| hypothetical protein A1Q2_02392 [Trichosporon asahii var. asahii
CBS 8904]
Length = 387
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L F G V+S + + +T SRG GY+ ++SA AI
Sbjct: 206 VFVGGLSWNIDNDWLASEFASCGEVVSARIVLDRDTQRSRGFGYVEFADVDSAIKAI-EF 264
Query: 162 DGSDVGGREMRVRFS----IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ GR +RV F+ D + R + SPP L++G+L + +
Sbjct: 265 EGKELDGRAVRVNFANARKPDADKRAKVFNDKRSPPADT--------LWIGSLPFDTTED 316
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ FG +G V S R+ DR+ + FG+++F A+ AAL +LNG++F R I +
Sbjct: 317 HIYETFGEYGDVQSVRLPTDRETGAAKGFGYVTFGDVAQATAALEALNGSEFGSRRIRI 375
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 96 RARPCE-LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
R+ P + L++ +LP FD +E + E F +G V SV + + ETG ++G GY+T G +
Sbjct: 297 RSPPADTLWIGSLP--FDTTEDHIYETFGEYGDVQSVRLPTDRETGAAKGFGYVTFGDVA 354
Query: 153 SAKNAIIALDGSDVGGREMRVRFS 176
A A+ AL+GS+ G R +R+ F+
Sbjct: 355 QATAALEALNGSEFGSRRIRIDFA 378
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E+ + ++VG LSW + + L + F G VVSAR++ DR Q +R FG++ F+
Sbjct: 201 EATNTVFVGGLSWNIDNDWLASEFASCGEVVSARIVLDRDTQRSRGFGYVEFADVDSAIK 260
Query: 260 ALSLNGTDFRGRTIIV 275
A+ G + GR + V
Sbjct: 261 AIEFEGKELDGRAVRV 276
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAAAQAIKHV 209
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ ++ R+
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNINSEASDDEFRD 260
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V S+ + D++G+ +R FGF++F++ +A A LNG DFRG+ + V
Sbjct: 261 LFTKYGEVTSSSLARDQEGK-SRGFGFVNFTTHEAASQAVEELNGKDFRGQDLYVGRAQK 319
Query: 281 RTE 283
+ E
Sbjct: 320 KHE 322
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 27/206 (13%)
Query: 78 NVGGNEVDDD-------SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130
NV G + D D S+V +P++ A LYV L + L E+F G V S+
Sbjct: 35 NVEGAQGDADTAGPTPNSAVPQPQASA---SLYVGELEPQVTEAMLFELFSHIGPVASIR 91
Query: 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 190
V R+ T S G Y+ + + + A+ L+ + + GR R+ +S + +N +
Sbjct: 92 VCRDAVTRRSLGYAYVNYNTTSDGEKALEELNYTVINGRPCRIMWSQRDPALRKNGQG-- 149
Query: 191 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
+++ NL A+ + L + F FG ++S +V D G ++ +GF+
Sbjct: 150 -------------NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHG-NSKGYGFVH 195
Query: 251 FSSD-AERDAALSLNGTDFRGRTIIV 275
+ +D A A +NG + + V
Sbjct: 196 YETDEAAAQAIKHVNGMLLNEKKVYV 221
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 88/194 (45%), Gaps = 14/194 (7%)
Query: 54 GFRSVLAVVDEEAVVVEDEING------KDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
G+ V DE A +NG K VG + D + +A +YV N+
Sbjct: 190 GYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNI 249
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
E ++F +G V S ++R+ E G SRG G++ + +A A+ L+G D
Sbjct: 250 NSEASDDEFRDLFTKYGEVTSSSLARDQE-GKSRGFGFVNFTTHEAASQAVEELNGKDFR 308
Query: 168 GREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHF 223
G+++ V + + R ++ EA +K Y+ + LY+ NLS V E LR F
Sbjct: 309 GQDLYVGRAQKKHEREEELRKSYEAARQ--EKANKYQGVN-LYIKNLSDDVDDEKLRAMF 365
Query: 224 GRFGTVVSARVLHD 237
FG + SA+V+ D
Sbjct: 366 SEFGPITSAKVMRD 379
>gi|171690010|ref|XP_001909937.1| hypothetical protein [Podospora anserina S mat+]
gi|170944960|emb|CAP71071.1| unnamed protein product [Podospora anserina S mat+]
Length = 565
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 93/182 (51%), Gaps = 8/182 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL E F+ G V ++ ++ + S+G GY+ + +S + A + L
Sbjct: 181 VFVQQLAARLRTKELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNEDSVQ-AALQL 239
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + V+ + + N + RN +A + P I H+LYVGN+ +++ +DL+
Sbjct: 240 TGQKLLGIPVIVQLTEAEKNRQVRNPDATGNHPNSIPF----HRLYVGNIHFSITEQDLQ 295
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ D G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 296 NVFEPFGELEFVQLQKDDTGR-SRGYGFVQFRDATQAREALEKMNGFDLAGRPIRVGLGN 354
Query: 280 DR 281
D+
Sbjct: 355 DK 356
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 191 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
SPP ++V L+ ++ ++L+ F + G V A+++ DR ++ G++
Sbjct: 167 SPPPLTEDERDRRTVFVQQLAARLRTKELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVE 226
Query: 251 FSSDAERDAALSLNGTDFRGRTIIVR 276
F ++ AAL L G G +IV+
Sbjct: 227 FKNEDSVQAALQLTGQKLLGIPVIVQ 252
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 7/178 (3%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
S +EE +++ +YV N+ E +++F+PFG + S + + E G SRG G++
Sbjct: 177 QSKIEEMKNQF--TNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDE-GKSRGFGFV 233
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
+ A A+ AL SDV GR++ V + R K K+ Y+ +
Sbjct: 234 NFDTHEEAHAAVEALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVN- 292
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LY+ NL + E LR F FG + SA+V+ D KG ++ FGF+ FSS E A++
Sbjct: 293 LYIKNLEDDIDDERLRGEFEPFGNITSAKVMRDEKG-ISKGFGFVCFSSPDEATKAVA 349
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S A LYV L + + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 2 SAAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 61
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ S + GR R+ +S + + + +++ NL +
Sbjct: 62 ERALEQLNYSLIKGRACRIMWSQRDPALRKTGQG---------------NIFIKNLDEQI 106
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG V+S +V D G+ ++ +GF+ + +++A A ++NG + +
Sbjct: 107 DNKALHDTFAAFGNVLSCKVATDEHGR-SKGYGFVHYETAEAAETAIKAVNGMLLNDKKV 165
Query: 274 IVREGVDRTE 283
V + R E
Sbjct: 166 YVGHHISRKE 175
>gi|342180347|emb|CCC89824.1| putative RNA-binding protein [Trypanosoma congolense IL3000]
Length = 534
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 93/197 (47%), Gaps = 17/197 (8%)
Query: 79 VGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
G D + V + R+ R L+V N+PR+ S L +F+P+G ++S V RN T
Sbjct: 89 AGAGRGDVSAPVADSRAETRSRTNLFVSNIPRTMGKSGLTTLFEPYGEIVSAAVMRNIHT 148
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G S G ++ + A+ A+ AL GS GR M V+++ + T EA +KI
Sbjct: 149 GESLGTAFVRFATTEQAQRAMEALTGSMQEGRAMIVQWAKRQHDDTPVGEAR----RKIV 204
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD---RKGQTT-RVFGFISFSS 253
KL+V N+ V DL FGRFG V + D +G+ R FI+F +
Sbjct: 205 ------KLFVRNIPLDVSDGDLSELFGRFGAVKGVSIHKDTTPSEGRNAERRIAFITFQT 258
Query: 254 D--AERDAALSLNGTDF 268
+ AE+ A + N F
Sbjct: 259 ESVAEKAAEVIHNTRPF 275
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 19/186 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS ++ + E G SRG G++ + +A+NAI +
Sbjct: 17 VFIKNLDKSIDNKALYDTFSAFGNILSCKIV-SDEHG-SRGYGFVHFETEEAARNAIEKV 74
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + G+++ V RF MN R R E + KK + +Y+ N S + E L+
Sbjct: 75 NGMLLNGKKVFVGRF---MNRRER-LEQMGDKMKKF------NNVYIKNFSEEIDDEKLK 124
Query: 221 NHFGRFGTVVSARVL--HDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVRE 277
F FG ++SA+V+ +D KG R FGF+S+ +A A +N F +T+ V
Sbjct: 125 IWFETFGKIISAKVMTGYDGKG---RGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGR 181
Query: 278 GVDRTE 283
R E
Sbjct: 182 AQKRAE 187
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 11/207 (5%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARPCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+NGK G ++ +E+ + + +Y+ N D +L F+ FG ++S +V
Sbjct: 79 LNGKKVFVGRFMNRRERLEQMGDKMKKFNNVYIKNFSEEIDDEKLKIWFETFGKIISAKV 138
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ G RG G+++ +A+ A+ ++ + + V + R +
Sbjct: 139 MTGYD-GKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKRAERQAELKDKFD 197
Query: 192 PPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
K ++ Y+ + LYV NL ++ E LR F FGT+ SA+V+ + G ++ FGF+
Sbjct: 198 RLKQERMNRYQGVN-LYVKNLDDSIDDEKLRKEFSAFGTITSAKVMTE--GGRSKGFGFV 254
Query: 250 SFSSDAERDAALSLNGTDFRGRTIIVR 276
FSS E A+ T+ GR I+ +
Sbjct: 255 CFSSPEEATKAV----TEMNGRIIVAK 277
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A+ +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFAPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + SRG G++ + +A+NAI +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQNAIRTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARALEFT-----NIYVKNLHVDVDERCLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F + A++ +NG + GR + V
Sbjct: 210 LFSQFGKILSVKVMRDDSGH-SRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNVF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A ++A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALA 368
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++
Sbjct: 219 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVN 275
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---K 204
SA+ A+ L+ +V G+++ + R AE S +K E+
Sbjct: 276 YEHHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVN 333
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LY+ NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +
Sbjct: 334 LYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEM 392
Query: 264 NG 265
NG
Sbjct: 393 NG 394
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G SRG ++ + +A AI A+
Sbjct: 138 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R E L + F +Y+ N+ V + +
Sbjct: 197 NGMLLNDKKVYVGHHVGKKERLSKVEEL----RAQFT-----NVYIKNVDLEVTDAEFED 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGVD 280
FG +S + D KG ++ FGF+++ ++ R A LN + G+ +
Sbjct: 248 LVKPFGPTISVALSRDEKG-VSKGFGFVNYEHHESARKAVDELNEKEVNGKKLYAGRAQT 306
Query: 281 RTE 283
++E
Sbjct: 307 KSE 309
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + + I ++ NL ++ + L +
Sbjct: 110 NYSLIKGQSCRIMWSQRDPALRKTGQGNI---------------FIKNLDQSIDNKALHD 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G+ +R F F+ +S+ DAA+ ++NG + + V V
Sbjct: 155 TFAAFGDILSCKVGTDENGK-SRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVG 213
Query: 281 RTE 283
+ E
Sbjct: 214 KKE 216
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 10/197 (5%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSR-----ARPCELYVCNLPRSFDISELLEMFKPFGTVL 127
+N K G+ + +S E +S+ A+ +YV NL + +++F+ FG V
Sbjct: 197 LNDKKVYVGHHISRKASSRERQSKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVT 256
Query: 128 SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
S V + E G SRG G++ + A+ A+ L S+ GR++ V + R
Sbjct: 257 SA-VIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRAQKKAEREEELR 315
Query: 188 ALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
K K+ Y+ + LY+ NL + E LR F FG++ SA+V+ D KG T++
Sbjct: 316 KSYEQAKVEKMSKYQGVN-LYIKNLEDDIDDERLRQEFEPFGSITSAKVMRDEKG-TSKG 373
Query: 246 FGFISFSSDAERDAALS 262
FGF+ FSS E A++
Sbjct: 374 FGFVCFSSPDEATKAVA 390
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 17/184 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 105
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S + + + I ++ NL + + L +
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEQIDNKALHD 150
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V+S +V D G+ ++ +GF+ + +++A A ++NG + + V +
Sbjct: 151 TFAAFGNVLSCKVATDEHGR-SKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHIS 209
Query: 281 RTES 284
R S
Sbjct: 210 RKAS 213
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ +G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-VSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A+NAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHEAAQNAISTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREVELGARAMEFT-----NIYVKNLHVDVDEQRLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F E + A +++NG + GR + V
Sbjct: 210 LFSQFGKMLSVKVMRDVSGH-SRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A ++A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALA 368
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D L E+F FG +LS +V++N E G SRG G++ SA +I L
Sbjct: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASIQNL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S GR++ V I + R+ N + + LY+ NL + E ++
Sbjct: 187 NNSHFCGRQLHVATFIKKSERSTNNDDKYT------------NLYMKNLDDDITEELIKL 234
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V+S +++ R T++ FGF+SF + ++ + A S+NG +T+ V
Sbjct: 235 KFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQK 293
Query: 281 RTE 283
+ E
Sbjct: 294 KAE 296
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 97/178 (54%), Gaps = 8/178 (4%)
Query: 102 LYVCNLPRSFDISE-LLEM-FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LY+ NL DI+E L+++ F +G V+SV++ + + G S+G G+++ + SAK A
Sbjct: 218 LYMKNLDD--DITEELIKLKFSQYGLVISVKIMKR-DDGTSKGFGFVSFQNPESAKRAKE 274
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPED 218
+++G +G + + V + R + + L + +I + +Y+ N++ V +
Sbjct: 275 SMNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEIITKSNGSNVYIKNINDEVGDDA 334
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
LR F FG + SA+++ D KG ++ FGF+ +++ E A+S + G F G+ + V
Sbjct: 335 LRERFNEFGNITSAKIMRDEKG-ISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYV 391
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S LLE+F GT+ SV V R+ T S GY+ S A A+ L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + + +RV +S R+ +A S +F V NL+ V L+
Sbjct: 100 NHSLILDKPIRVMWS------NRDPDARRSGVGNVF---------VKNLNDLVDNVSLQE 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG ++S +V + G T+R +GF+ F+ DA++ +LN + F GR + V +
Sbjct: 145 LFCKFGDILSCKVAKNEDG-TSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIK 203
Query: 281 RTE 283
++E
Sbjct: 204 KSE 206
>gi|70994844|ref|XP_752199.1| ribosome biogenesis (Nop4) [Aspergillus fumigatus Af293]
gi|66849833|gb|EAL90161.1| ribosome biogenesis (Nop4), putative [Aspergillus fumigatus Af293]
gi|159124888|gb|EDP50005.1| ribosome biogenesis (Nop4), putative [Aspergillus fumigatus A1163]
Length = 740
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 14/192 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V +LP S L E F + V +PET + +G G++T + A+ A+
Sbjct: 50 LFVRSLPTSATTESLTEYFSQSYVIKHAIVVNDPETKLCKGYGFVTFADLEDAQAALKEF 109
Query: 162 DGSDVGGREMRVRFS------IDMN-SRTRNAEALISPPKKIFVYES---PHKLYVGNLS 211
+GS G+ +RV ++ ID N ++ A A + K+ ++ P KL V NL
Sbjct: 110 NGSVFEGKTIRVDYAQPRHREIDENLGKSVPAPAALELKKQREQQKTSTQPPKLIVRNLP 169
Query: 212 WAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR 269
W++K PEDL HF FG V V +KG FGF+ + AL ++NG +
Sbjct: 170 WSIKEPEDLAVHFRSFGKV--KYVTLPKKGDKLAGFGFVVLRGKKNAEKALQAVNGKEVD 227
Query: 270 GRTIIVREGVDR 281
GRT+ V V++
Sbjct: 228 GRTLAVDWAVEK 239
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 9/195 (4%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A+ LY+ NL + L E F FG ++S+ +S++ + G+S+G ++ + +
Sbjct: 184 PGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKD-DNGLSKGFAFVNYENPD 242
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVGNL 210
A+ A+ A++G G + + V + R + +K I Y++ + LYV N+
Sbjct: 243 DARKAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASN-LYVKNI 301
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR 269
V ++LR+ F GT+ S +V+ D KG ++ FGF+ FS+ E + A+ S NG F
Sbjct: 302 DDDVTDKELRDLFSSCGTITSVKVMRDDKG-ISKGFGFVCFSNPEEANKAVRSFNGCMFH 360
Query: 270 GRTI---IVREGVDR 281
+ + I + +DR
Sbjct: 361 RKPLYIAIAQRKMDR 375
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D + L ++F+ +G +LS +V + + G S+G G++ S SA NAI L
Sbjct: 102 VFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGD-GKSKGYGFVQFESEESANNAIEKL 160
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPEDLR 220
+GS VG +++ V + R I P Y++ + LY+ NL + L+
Sbjct: 161 NGSTVGDKQIYVGKFVRKGDR-------ILPG-----YDAKYTNLYIKNLDSDITEALLQ 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
F FG ++S + D G ++ F F+++ + D R A ++NG F + + V
Sbjct: 209 EKFSSFGKIISLVISKDDNG-LSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYVARAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKAE 271
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P LYVG+L V L F F T+ S RV DR + +G+++F S + A+
Sbjct: 11 PASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAM 70
Query: 262 SL-NGTDFRGRTIIV 275
L N + G+ I V
Sbjct: 71 KLKNNSYLNGKVIRV 85
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 11/179 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + + F FG V +V + ++ G SRG G++ S + AK A+ AL
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG-NGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI----FVYESPHKLYVGNLSWAVKPE 217
+G+ +G +++ V + R + L+ K++ E LYV NL +V +
Sbjct: 268 NGAMLGSKKLFVGRAQKKAER----QELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDD 323
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
L+ HF G + SA+V+ G ++ FGF+ FS+ E AL +LNGT GR++ +
Sbjct: 324 KLQEHFSSCGQITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYI 381
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL S + + L ++F FG +LS +V+ E G S+ G++ S +SA A+ AL
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAE--ENGKSKCFGFVQFDSDDSATAALNAL 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+++ V + R +E + F +YV NL + + +R+
Sbjct: 177 NDTMLDGKKLFVSKFVKKCERKEASE------ETKFT-----NVYVKNLGEDLTEDIIRD 225
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V + ++ D G+ +R FGF++F S D + A +LNG + + V
Sbjct: 226 KFSEFGKVGTVVIMKDGNGK-SRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQK 284
Query: 281 RTE 283
+ E
Sbjct: 285 KAE 287
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LYV NL S D +L E F G + S +V R+ ++G+S+G G++ + A+
Sbjct: 305 KEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRH-DSGLSKGFGFVCFSTSEEAQ 363
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTR 184
A+ L+G+ + GR + + + R R
Sbjct: 364 KALTTLNGTLLHGRSLYIAMAQRKEDRQR 392
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRV 173
A+ ++G VG + + V
Sbjct: 348 KAVTEMNGRIVGTKPLYV 365
>gi|120613408|ref|YP_973086.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120591872|gb|ABM35312.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 176
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQALGGRSIVVNE 78
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S ++L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQALGGRSIVVNEARPMEPR 85
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-SSGRSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++
Sbjct: 252 NGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQ--DRLSRYQGVN-LYVKNLDDSIDDG 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GSHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G++LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
SR + LYV NL S D +L + F P+G + S +V E S+G G++ S A
Sbjct: 289 SRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMT--EGSHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALA 368
>gi|357129961|ref|XP_003566627.1| PREDICTED: uncharacterized protein LOC100837982 [Brachypodium
distachyon]
Length = 620
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 8/216 (3%)
Query: 71 DEINGKDNVGGNEVDDDSS-VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
DE K V G V D+ V E R ++ ++YV +P ++ F+ G++ ++
Sbjct: 163 DENKNKSEVTGQGVGSDNPIVSEDREQSIK-KVYVGGIPYYSSEDDIRSFFEGCGSITAL 221
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR-FSIDMNSRTRNAEA 188
+ PE+G RG LT + +A+ A +ALDG+D+GG ++V+ + + N E
Sbjct: 222 DCMTFPESGKFRGIAILTFKTDAAAQRA-LALDGADMGGFFLKVQPYKANREKVKSNHEK 280
Query: 189 LISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
PK I Y +++YVGNL+W + DLR F + S R D++ + F
Sbjct: 281 EDFAPKMIEGY---NRIYVGNLAWDITEVDLRKFFSDC-KISSIRFGTDKETGDFKGFAH 336
Query: 249 ISFSSDAERDAALSLNGTDFRGRTIIVREGVDRTES 284
+ FS A+ L+ +GR + +R V R ES
Sbjct: 337 VDFSDGTSLAVAMKLDQNVIKGRPVRIRCAVPRKES 372
>gi|443687463|gb|ELT90434.1| hypothetical protein CAPTEDRAFT_110688, partial [Capitella teleta]
Length = 353
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 94/189 (49%), Gaps = 11/189 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++V +L + +L E FKPFGT+ ++ R+P+T S+G G+++ A+NAI +
Sbjct: 87 HIFVGDLSPDIETPQLREAFKPFGTISDCKIIRDPQTLKSKGYGFVSYVERKEAENAINS 146
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPP--KKIFVYESPHK--LYVGNLSWAVKP 216
++G +G R +R ++I + E P ++F SP +Y G + +
Sbjct: 147 MNGQWIGSRAIRTNWAIRKPAAPATKETNAQPLTFDEVFKKSSPTNCTVYCGGILSGLTE 206
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
+ +R+ FG G + RV D+ + FI +++ +A +A + ++ T+ G T+
Sbjct: 207 DLVRSAFGEHGKIEEIRVFKDKG------YAFIRYNTKEAATEAIVKMHQTEVGGHTVKC 260
Query: 276 REGVDRTES 284
G + +S
Sbjct: 261 SWGKESKDS 269
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
YV NL + L+ +F G ++ ETG + ++ +SA A+ ++
Sbjct: 1 YVGNLDPTVTEDLLMALFGSIGPCKGCKIIH--ETG-NEPYAFVEFSEHSSAALALGTMN 57
Query: 163 GSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNH 222
GREM+V ++ ++T+ + H ++VG+LS ++ LR
Sbjct: 58 KRTCFGREMKVNWATSPGTQTKQDTS------------KHHHIFVGDLSPDIETPQLREA 105
Query: 223 FGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
F FGT+ +++ D + ++ +GF+S+ E + A+ S+NG R I
Sbjct: 106 FKPFGTISDCKIIRDPQTLKSKGYGFVSYVERKEAENAINSMNGQWIGSRAI 157
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D L E+F FG +LS +V++N E G SRG G++ SA +I L
Sbjct: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASIQNL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S GR++ V I + R+ N + + LY+ NL + E ++
Sbjct: 187 NNSHFCGRQLHVATFIKKSERSTNNDDKYT------------NLYMKNLDDDITEELIKL 234
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V+S +++ R T++ FGF+SF + ++ + A S+NG +T+ V
Sbjct: 235 KFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQK 293
Query: 281 RTE 283
+ E
Sbjct: 294 KAE 296
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 97/178 (54%), Gaps = 8/178 (4%)
Query: 102 LYVCNLPRSFDISE-LLEM-FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LY+ NL DI+E L+++ F +G V+SV++ + + G S+G G+++ + SAK A
Sbjct: 218 LYMKNLDD--DITEELIKLKFSQYGLVISVKIMKR-DDGTSKGFGFVSFQNPESAKRAKE 274
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPED 218
+++G +G + + V + R + + L + +I + +Y+ N++ V +
Sbjct: 275 SMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDA 334
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
LR F FG + SA+++ D KG ++ FGF+ +++ E A+S + G F G+ + V
Sbjct: 335 LRERFNEFGNITSAKIMRDEKG-ISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYV 391
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S LLE+F GT+ SV V R+ T S GY+ S A A+ L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + + +RV +S R+ +A S +F V NL+ V L+
Sbjct: 100 NHSLILDKPIRVMWS------NRDPDARRSGVGNVF---------VKNLNDLVDNVSLQE 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG ++S +V + G T+R +GF+ F+ DA++ +LN + F GR + V +
Sbjct: 145 LFCKFGDILSCKVAKNEDG-TSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIK 203
Query: 281 RTE 283
++E
Sbjct: 204 KSE 206
>gi|121607153|ref|YP_994960.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
gi|121551793|gb|ABM55942.1| RNP-1 like RNA-binding protein [Verminephrobacter eiseniae EF01-2]
Length = 175
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDGDLEQAFGQFGAVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQPLGGRSIVVNE 78
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVASAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSIVVNEARPMEPR 85
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|326428383|gb|EGD73953.1| hypothetical protein PTSG_05647 [Salpingoeca sp. ATCC 50818]
Length = 372
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 85/184 (46%), Gaps = 22/184 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV LP S L ++ + G V VEV + G+S+GCG + + A+NAI
Sbjct: 169 VYVGGLPYSMTWQHLKDLMRKAGPVEHVEVMYD-GNGMSKGCGLVRFATAEDAQNAIRMF 227
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR + VR + + R ++VGNL W V +L++
Sbjct: 228 NEQPLDGRNLLVRVDAEADKYRRGV-----------------SVHVGNLPWEVTWRELKD 270
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
G V+ A V+HD G +R +G + F S+D A N ++ GR+I VR +D
Sbjct: 271 LMRPAGEVIHAEVMHDNNG-LSRGWGIVRFVSADGANAAIEQFNEFEWLGRSITVR--LD 327
Query: 281 RTES 284
R E+
Sbjct: 328 RREA 331
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 10/183 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S L E G V +V R+ G S+GCG + G + +A AI +
Sbjct: 60 VYVGNLSWSTTWPRLKEFMSEIGHVAFADVLRD-MNGRSKGCGIVVFGDVETANRAIAEM 118
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK-------IFVYESPHKLYVGNLSWAV 214
G ++ GR++ VR + + R + +P + F E +YVG L +++
Sbjct: 119 SGRELDGRQIMVREDREAHRFPRRSARPPAPMHRPSTNYTATFSGEMGSTVYVGGLPYSM 178
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL-NGTDFRGRTI 273
+ L++ + G V V++D G ++ G + F++ + A+ + N GR +
Sbjct: 179 TWQHLKDLMRKAGPVEHVEVMYDGNG-MSKGCGLVRFATAEDAQNAIRMFNEQPLDGRNL 237
Query: 274 IVR 276
+VR
Sbjct: 238 LVR 240
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R ++V NLP EL ++ +P G V+ EV + G+SRG G + S + A A
Sbjct: 250 RGVSVHVGNLPWEVTWRELKDLMRPAGEVIHAEVMHD-NNGLSRGWGIVRFVSADGANAA 308
Query: 158 IIALDGSDVGGREMRVRF 175
I + + GR + VR
Sbjct: 309 IEQFNEFEWLGRSITVRL 326
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 193 PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
P+ + + +YVGNLSW+ L+ G V A VL D G+ ++ G + F
Sbjct: 48 PRPVRQNQPGTSVYVGNLSWSTTWPRLKEFMSEIGHVAFADVLRDMNGR-SKGCGIVVFG 106
Query: 253 SDAERDAALS-LNGTDFRGRTIIVRE 277
+ A++ ++G + GR I+VRE
Sbjct: 107 DVETANRAIAEMSGRELDGRQIMVRE 132
>gi|319765042|ref|YP_004128979.1| rnp-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|330827234|ref|YP_004390537.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
gi|317119603|gb|ADV02092.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans BC]
gi|329312606|gb|AEB87021.1| RNP-1 like RNA-binding protein [Alicycliphilus denitrificans K601]
Length = 144
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ +DL FG+FG V SA+V+ +R ++ FGF+ SDA+ AA++
Sbjct: 3 NKLYVGNLPYSVRDQDLEQAFGQFGVVTSAKVMMERDTGRSKGFGFVEMGSDADAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQSLGGRSIVVNE 78
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFGQFGVVTSAKVMMERDTGRSKGFGFVEMGSDADAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQSLGGRSIVVNEARPMEPR 85
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P TG S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|375108277|ref|ZP_09754538.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374669008|gb|EHR73793.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 167
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL+++V+ E L+ F +FGTV SA+V+ DR+ ++ FGF+ + AE AA++
Sbjct: 3 NKLYVGNLAYSVRDESLQAAFSQFGTVTSAKVMMDRETGRSKGFGFVEMGTGAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVREGVDRTE 283
+NG GR ++V E R E
Sbjct: 63 GMNGQPLEGRAVVVNEARPREE 84
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S L F FGTV S +V + ETG S+G G++ MG+ A+ AI
Sbjct: 4 KLYVGNLAYSVRDESLQAAFSQFGTVTSAKVMMDRETGRSKGFGFVEMGTGAEAQAAING 63
Query: 161 LDGSDVGGREMRV 173
++G + GR + V
Sbjct: 64 MNGQPLEGRAVVV 76
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGAALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGINDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGINDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ ETG S+G G++ + +A AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ETGASKGYGFVHYETDEAASQAIKHV 207
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ V +D R
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNIAADVTEDDFRQ 258
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F ++G V S+ + D++G+ +R FGF++F++ A+ LN DF G+ + V
Sbjct: 259 LFEKYGDVTSSSLARDQEGK-SRGFGFVNFTTHESASKAVDELNNKDFHGQDLYVGRAQK 317
Query: 281 RTE 283
+ E
Sbjct: 318 KHE 320
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEEL 120
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDVAIDNKALHD 165
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G ++ +GF+ + +D A A +NG + + V
Sbjct: 166 TFAAFGNILSCKVAQDETG-ASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 219
>gi|212528572|ref|XP_002144443.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
gi|210073841|gb|EEA27928.1| ribosome biogenesis (Nop4), putative [Talaromyces marneffei ATCC
18224]
Length = 728
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 20/230 (8%)
Query: 65 EAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFG 124
EA +VE+ ++GK G S E P EL+V +LP S +L E F
Sbjct: 18 EAKLVEEIVSGKTETNG------ESTETPAKPQMRRELFVRSLPASATTEKLTEFFSQSY 71
Query: 125 TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS------ID 178
+ V +PET S+G G++T I A+ A+ +G+D GR+++V + ID
Sbjct: 72 VLKHATVVIDPETKKSKGYGFVTFADIEDAQRALEEFNGADFEGRKIKVEVAQPRKREID 131
Query: 179 MNSR----TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED-LRNHFGRFGTVVSAR 233
T + L + K +P +L V NL W +K D L F FG V A
Sbjct: 132 EKGGKSVPTAESVRLKAERTKEREQTAPPRLIVRNLPWTIKESDQLAALFRSFGKVKHAV 191
Query: 234 VLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282
V +KG FGF+ + AL ++NG + GRT+ V V+++
Sbjct: 192 V--PKKGNVQAGFGFVVLRGRKNAEKALEAVNGKEVDGRTLAVDWAVEKS 239
>gi|154270523|ref|XP_001536116.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409920|gb|EDN05308.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 633
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 14/204 (6%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SS+++P+SR L+V +LP S L E F + V +P+T S+G G++T
Sbjct: 33 SSLQKPKSRR---TLFVRSLPASATTESLTEYFSQSYPLKHATVVLDPQTKQSKGYGFVT 89
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFS------IDMNSRTRNAEALISPPKKIFVYES 201
A A+ +GSD GR++++ + ID N + + + ++I ++
Sbjct: 90 FADHEDAAKALEEFNGSDFDGRKLKIEVAEPRHREIDENQGKSVSISHLKQVREIRKTQA 149
Query: 202 -PHKLYVGNLSWAV-KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
P KL + NL W++ +P+ L N F FG V A + ++G FGF+ +
Sbjct: 150 QPPKLIIRNLPWSIAEPDQLSNLFRSFGKVKHAVI--PKRGTKHSGFGFVVLRGRKNAEK 207
Query: 260 AL-SLNGTDFRGRTIIVREGVDRT 282
AL ++NG + GRT+ V V+++
Sbjct: 208 ALNAVNGKEVDGRTLAVDWAVEKS 231
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 18/173 (10%)
Query: 94 RSRARPCELYVCNLPRSF-DISELLEMFKPFGTVLSVEVSRNPETGISR-GCGYLTMGSI 151
+++A+P +L + NLP S + +L +F+ FG V + P+ G G G++ +
Sbjct: 146 KTQAQPPKLIIRNLPWSIAEPDQLSNLFRSFGKVKHAVI---PKRGTKHSGFGFVVLRGR 202
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSI-------------DMNSRTRNAEALISPPKKIFV 198
+A+ A+ A++G +V GR + V +++ D+ +A + +
Sbjct: 203 KNAEKALNAVNGKEVDGRTLAVDWAVEKSVWDEFQNHTDDVIDEGVEEDAGKKIDEDVED 262
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
+ +++ NL + + L HF +FG + ARV+ D + R F+ F
Sbjct: 263 ERNASTVFIRNLPFNATDDSLYEHFVQFGPLRYARVVVDAETDRPRGTAFVCF 315
>gi|407941455|ref|YP_006857096.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
gi|407899249|gb|AFU48458.1| RNP-1 like RNA-binding protein [Acidovorax sp. KKS102]
Length = 188
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQPLGGRSIVVNE 78
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSIVVNEARPMEPR 85
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 67 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 125
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 126 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 182
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 183 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 235
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 116 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 175
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 176 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 233
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 234 TKPLYVALA 242
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ + G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DIGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + + Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRATRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + SRG G++ + +A AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAHQAIATM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARAMEFT-----NIYVKNLHVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F E + A + +NG + GR + V
Sbjct: 210 LFSQFGKMLSVKVMRDDIGH-SRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPVRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALA 368
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L E+F +G LS+ V + E+G S+G G+++
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ GR++ V + R + K ++ Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGR 356
Query: 272 TIIVR 276
+ +
Sbjct: 357 IVATK 361
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|320591904|gb|EFX04343.1| nucleolin protein [Grosmannia clavigera kw1407]
Length = 413
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 85/175 (48%), Gaps = 4/175 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL + D S L + FK F + V + ET SRG GY+ S+ A+ A +
Sbjct: 168 LFVGNLSWNVDDSVLYDEFKGFDGLTGARVITDRETQRSRGFGYVEFDSVEHAQAAFDKM 227
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPEDL 219
G + GRE+++ FS +++ +A S KK SP L+VGNLS+ E +
Sbjct: 228 TGYFLDGRELKIDFST-GRAKSNDANPAASRAKKYGDVTSPESDTLFVGNLSFDADEETV 286
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 273
F V S R+ D + + FG++SF S + + A +LNG GR +
Sbjct: 287 SAFFSEVANVKSLRLPTDMESGRPKGFGYVSFYSLEDSKKAFDTLNGQSCAGRNV 341
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E+ L+VGNLSW V L + F F + ARV+ DR+ Q +R FG++ F S A
Sbjct: 163 ETSSTLFVGNLSWNVDDSVLYDEFKGFDGLTGARVITDRETQRSRGFGYVEFDSVEHAQA 222
Query: 260 AL-SLNGTDFRGRTIIV 275
A + G GR + +
Sbjct: 223 AFDKMTGYFLDGRELKI 239
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL SFD E + F V S+ + + E+G +G GY++ S+ +K A
Sbjct: 272 LFVGNL--SFDADEETVSAFFSEVANVKSLRLPTDMESGRPKGFGYVSFYSLEDSKKAFD 329
Query: 160 ALDGSDVGGREMRVRFSI 177
L+G GR +R+ +S
Sbjct: 330 TLNGQSCAGRNVRLDYST 347
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 150 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 208
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+S +D R
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNISPEATEDDFRQ 259
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V S+ + D++G+ +R FGF++F++ ++ A LNG DFRG+ + V
Sbjct: 260 LFEQYGDVTSSSLARDQEGK-SRGFGFVNFTTHESAAKAVDELNGKDFRGQDLYVGRAQK 318
Query: 281 RTE 283
+ E
Sbjct: 319 KHE 321
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 20/189 (10%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ P++ A LYV L + + L E+F G V S+ V R+ T S G Y+
Sbjct: 51 SAAPHPQNSA---SLYVGELDPAVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVN 107
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S + A+ L+ + + GR R+ +S + + + +++
Sbjct: 108 YNSTADGEKALEELNYTIIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 152
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A +NG
Sbjct: 153 KNLDVAIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETDEAAAQAIKHVNGM 211
Query: 267 DFRGRTIIV 275
+ + V
Sbjct: 212 LLNEKKVYV 220
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 10/192 (5%)
Query: 54 GFRSVLAVVDEEAVVVEDEING------KDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
G+ V DE A +NG K VG + D + +A +YV N+
Sbjct: 189 GYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNI 248
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ ++F+ +G V S ++R+ E G SRG G++ + SA A+ L+G D
Sbjct: 249 SPEATEDDFRQLFEQYGDVTSSSLARDQE-GKSRGFGFVNFTTHESAAKAVDELNGKDFR 307
Query: 168 GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGR 225
G+++ V + + R + K Y+ + LY+ NL V + LR F
Sbjct: 308 GQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN-LYIKNLDDDVDDDKLRQMFSE 366
Query: 226 FGTVVSARVLHD 237
FG + SA+V+ D
Sbjct: 367 FGPITSAKVMRD 378
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ + G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DIGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + + Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRATRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + SRG G++ + +A AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAHQAIATM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARAMEFT-----NIYVKNLHVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F E + A + +NG + GR + V
Sbjct: 210 LFSQFGKMLSVKVMRDDIGH-SRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPVRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF+ F + +A A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALA 368
>gi|425781065|gb|EKV19047.1| Nucleolin protein Nsr1, putative [Penicillium digitatum PHI26]
Length = 537
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 87/177 (49%), Gaps = 3/177 (1%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ NL + D L F FG + V + + ETG SRG GY+ S A A+
Sbjct: 281 ANLFIGNLSWNVDEEWLQREFSEFGELSGVRIVTDRETGRSRGFGYVEYNSAADAAKAME 340
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPE 217
A G+D+ GR + + ++ + T+ A+ + SP L+VGNL ++ +
Sbjct: 341 AKKGTDLDGRTINLDYAAPRQANTQGADRSQDRARSYGDQTSPESDTLFVGNLPFSATED 400
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 273
L FG G+V+ R+ +++ + FG++ FSS D + A +LNG + GR I
Sbjct: 401 ALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAALNGHELEGRAI 457
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S L E+F G+VL + + ETG +G GY+ SI+ AK A AL
Sbjct: 388 LFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAAL 447
Query: 162 DGSDVGGREMRVRFSI 177
+G ++ GR +R+ FS
Sbjct: 448 NGHELEGRAIRLDFST 463
>gi|115460220|ref|NP_001053710.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|38346724|emb|CAE04874.2| OSJNBa0086O06.22 [Oryza sativa Japonica Group]
gi|113565281|dbj|BAF15624.1| Os04g0591000 [Oryza sativa Japonica Group]
gi|215706340|dbj|BAG93196.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 291
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 11/177 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+P SF E+ ++F G V VEV + + G +G ++TM + A A+
Sbjct: 81 KLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKG-KDGKKKGFAFVTMATAEEAAAAVEK 139
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ DV GR +RV FS + E HKLYV NL W + +++
Sbjct: 140 LNSLDVMGRTIRVEFSKSFRKPAPPPPPGT-------ILER-HKLYVSNLPWKARAPNMK 191
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F +F +SA+V+ D + +GF+SF + E +AAL+ L+G + GR + +R
Sbjct: 192 EFFSKFNP-LSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLR 247
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 101 ELYVCNLP---RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+LYV NLP R+ ++ E F P LS +V + +G S G G+++ G+ A+ A
Sbjct: 175 KLYVSNLPWKARAPNMKEFFSKFNP----LSAKVVFDSPSGKSAGYGFVSFGTKEEAEAA 230
Query: 158 IIALDGSDVGGREMRVRF 175
+ LDG ++ GR +R+R+
Sbjct: 231 LTELDGKELMGRPVRLRW 248
>gi|347819854|ref|ZP_08873288.1| RNP-1 like RNA-binding protein [Verminephrobacter aporrectodeae
subsp. tuberculatae At4]
Length = 168
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIT 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQPLGGRSIVVNE 78
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAITG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSIVVNEARPMEPR 85
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 237
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 238 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 290
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 88 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 137
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 138 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 195
Query: 279 VDRTE 283
+ E
Sbjct: 196 QKKVE 200
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 171 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 230
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 231 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 288
Query: 168 GREMRVRFS 176
+ V +
Sbjct: 289 TKPFYVALA 297
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D + L E+F FG VLS +V++N E G SRG G++ S SA AI L
Sbjct: 211 IFVKNLSSSVDNASLQELFSKFGDVLSCKVAKN-EDGTSRGYGFVQFTSQESADEAIGNL 269
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+GS R++ V I + R+ N + + LY+ +L + E ++
Sbjct: 270 NGSLFNDRKLHVATFIKKSERSANNDDKFT------------NLYMKHLDDDITEELVKL 317
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG++VS +++ R ++ FGF+SF + ++ A ++NG + + V
Sbjct: 318 KFSQFGSIVSVKIM-KRPDGSSLGFGFVSFQNPESAIKAQSTMNGMLLGSKALYVARAQK 376
Query: 281 RTE 283
+ E
Sbjct: 377 KEE 379
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L E F GTV SV V R+ T S GY+ S A A+ L
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V + +RV +S R+ +A S IF V NLS +V L+
Sbjct: 183 NHSLVLDKPIRVMWS------NRDPDARRSGVGNIF---------VKNLSSSVDNASLQE 227
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG V+S +V + G T+R +GF+ F+S D A+ +LNG+ F R + V +
Sbjct: 228 LFSKFGDVLSCKVAKNEDG-TSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIK 286
Query: 281 RTE 283
++E
Sbjct: 287 KSE 289
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 115 ELLEM-FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
EL+++ F FG+++SV++ + P+ G S G G+++ + SA A ++G +G + + V
Sbjct: 313 ELVKLKFSQFGSIVSVKIMKRPD-GSSLGFGFVSFQNPESAIKAQSTMNGMLLGSKALYV 371
Query: 174 RFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
+ R + + L + +I + +Y+ N+ V + LR F FG + SA
Sbjct: 372 ARAQKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRARFVEFGNITSA 431
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+V+ D KG +R FGF+ +S+ E +A+ ++ G F G+ + V
Sbjct: 432 KVMRDDKG-ISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYV 474
>gi|342180349|emb|CCC89826.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 292
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++CNL D S L +F +G ++S V RN TG S G ++ + A+ A+ AL
Sbjct: 26 LFICNLSPGVDESALKRIFSAYGEIVSAAVMRNIHTGGSLGTAFVRFAATEQAQRAMEAL 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GS GR M V+++ + T EA KKI KL+V N+ V E++R
Sbjct: 86 TGSMQEGRAMIVQWAKRQHDDTPVGEAR----KKIV------KLFVRNIPLDVGAEEVRR 135
Query: 222 HFGRFGTVVS-------ARVLHDRKGQTTRVFGFISFSSDAERDAA 260
F RFG V S A H GQ R F++F ++ D A
Sbjct: 136 LFERFGAVESVTLHKDTAAASHADVGQPLRRIAFVTFVAEGVADRA 181
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 14/189 (7%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL ++ D L E F FGT+LS +V+ + E G S+G G++ +A+
Sbjct: 118 RSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVD-EAGQSKGFGFVQYDKEEAAQ 176
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
NAI +L+G + + + V R E S K F + ++V NLS +
Sbjct: 177 NAIKSLNGMLINDKPVFV------GPFVRKQERDHSFDKTKF-----NNVFVKNLSESTT 225
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTII 274
EDL FG +G + SA V+ G+ +R FGFI+F + DA A LNG +
Sbjct: 226 KEDLLKIFGEYGDITSAVVMIGMDGK-SRCFGFINFENPDAASHAVQELNGKKINDKEWY 284
Query: 275 VREGVDRTE 283
V ++E
Sbjct: 285 VGRAQKKSE 293
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L E+F G V+SV V R+ + S G Y+ + A A+ L
Sbjct: 36 LYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEVL 95
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + + +RV +S S R+ A +++ NL + + L
Sbjct: 96 NFAALNNKPIRVMYSNRDPSSRRSGSA---------------NIFIKNLDKTIDNKTLHE 140
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FGT++S +V D GQ ++ FGF+ + +A ++A SLNG + + V V
Sbjct: 141 TFSSFGTILSCKVAVDEAGQ-SKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGPFVR 199
Query: 281 RTE 283
+ E
Sbjct: 200 KQE 202
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S +LL++F +G + S V + G SR G++ + ++A +A+ L
Sbjct: 215 VFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMD-GKSRCFGFINFENPDAASHAVQEL 273
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + +E V + +M + R ++L K Y+ + LY+ NL ++
Sbjct: 274 NGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADK---YQGLN-LYLKNLDDSIGD 329
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
+ L F FG + S +V+ D+ G ++ GF++FS+ E AL+ +NG G+ + V
Sbjct: 330 DQLCELFSNFGKITSYKVMRDQNG-LSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 388
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S+++ + + LY+ NL S +L E+F FG + S +V R+ + G+S+G G++
Sbjct: 303 EQSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRD-QNGLSKGSGFV 361
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ A A+ ++G + G+ + V F+ R + + P
Sbjct: 362 AFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQVTVLKP 408
>gi|351731832|ref|ZP_08949523.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 177
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ +DAE AA++
Sbjct: 3 NKLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQPLGGRSIVVNE 78
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S S+L + F FG V S +V +TG S+G G++ MG+ A+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSIVVNEARPMEPR 85
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 94 RSRARPCEL-----YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+ R +P E+ + NL +L E+ P+GT+ +V + + +TG S+G +
Sbjct: 177 KERGQPTEIKFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANF 236
Query: 149 GSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHK- 204
S ++AKN + +G G+ + R + I+ + ++ +E+ ++
Sbjct: 237 ESADAAKNVVEIENGKVFHGKPLYAGRAQKKIEREAELKH------------TFETKYQG 284
Query: 205 --LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LY+ N+ ++ + LR F +FGT+ SA V+ D K T++ FGF+ ++S E A+
Sbjct: 285 VNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAV- 343
Query: 263 LNGTDFRGRTI 273
T+ GR I
Sbjct: 344 ---TEMNGRMI 351
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L E+F G V ++ V R+ T S Y+ + A+ A+ L
Sbjct: 12 LYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERALDTL 71
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S S ++ +++ NL + + L +
Sbjct: 72 NNTPIRGKPCRIMWSQRDPSLRKSGVG---------------NVFIKNLDKGIDHKALYD 116
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F FG ++S +V+ D +++ FGF+ + S D A++ +NG G+ + V
Sbjct: 117 TFSAFGNILSCKVVTD-DNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFV 170
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ + LY+ N+ S D +L E+F FGT+ S V ++ + S+G G++ S + A
Sbjct: 280 TKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEA 339
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G +G + + V +
Sbjct: 340 TRAVTEMNGRMIGTKPLYVALA 361
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 129 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 244
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 245 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 297
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 95 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 144
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 145 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 202
Query: 279 VDRTE 283
+ E
Sbjct: 203 QKKVE 207
Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 178 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 237
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 238 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 295
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 296 TKPLYVALA 304
>gi|393246659|gb|EJD54168.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 531
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 15/227 (6%)
Query: 67 VVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCE-------LYVCNLPRSFDISELLEM 119
V ++DE G + +DD++ + + E ++V L + D L
Sbjct: 232 VEMKDEPAAAPAKGKRKAEDDAAPPSKKVKTDGAEGGEEVKSIFVGRLSWNVDDEWLKTE 291
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F G V+S V + +TG S+G GY+ SAK A+ ++G ++ GR + + +
Sbjct: 292 FAEAGEVVSARVQMDRQTGKSKGFGYVEFADAASAKKAVETMNGREIDGRPVNLDLATPR 351
Query: 180 N--SRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ R A+A E L+VGNL+++ + + FG G VV+ R+ D
Sbjct: 352 GPPNPERRAKAFGD-----SRSEPSATLFVGNLAFSATQDAVYELFGAVGEVVNVRLPTD 406
Query: 238 RKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDRTE 283
R + FG++ F+ AL+ L GTDF GR I + RTE
Sbjct: 407 RDSGQPKGFGYVEFADVETASKALNELGGTDFEGRNIRLDFSAPRTE 453
>gi|116311029|emb|CAH67960.1| OSIGBa0142I02-OSIGBa0101B20.3 [Oryza sativa Indica Group]
Length = 291
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 11/177 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+P SF E+ ++F G V VEV + + G +G ++TM + A A+
Sbjct: 81 KLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKG-KDGKKKGFAFVTMATAEEAAAAVEK 139
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ DV GR +RV FS + E HKLYV NL W + +++
Sbjct: 140 LNSLDVMGRTIRVEFSKSFRKPAPPPPPGT-------ILER-HKLYVSNLPWKARAPNMK 191
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F +F +SA+V+ D + +GF+SF + E +AAL+ L+G + GR + +R
Sbjct: 192 EFFSKFNP-LSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDGKELMGRPVRLR 247
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 101 ELYVCNLP---RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+LYV NLP R+ ++ E F P LS +V + +G S G G+++ G+ A+ A
Sbjct: 175 KLYVSNLPWKARAPNMKEFFSKFNP----LSAKVVFDSPSGKSAGYGFVSFGTKEEAEAA 230
Query: 158 IIALDGSDVGGREMRVRF 175
+ LDG ++ GR +R+R+
Sbjct: 231 LTELDGKELMGRPVRLRW 248
>gi|339501141|ref|YP_004699176.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
gi|338835490|gb|AEJ20668.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
Length = 116
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
++ KLYVGNLS+ + LRN F FG+V SA+++ DR+ ++ FGF+ S+D E
Sbjct: 19 IFSMAKKLYVGNLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEA 78
Query: 258 DAALS-LNGTDFRGRTIIVREGVDR 281
AA++ NG +F GR + V E +D+
Sbjct: 79 SAAIAGTNGREFEGRQLRVNEAMDK 103
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL + L +F FG+V S ++ + ETG S+G G++ M + A AI
Sbjct: 25 KLYVGNLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEASAAIAG 84
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRN 185
+G + GR++RV ++D R R+
Sbjct: 85 TNGREFEGRQLRVNEAMDKPRRERD 109
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 91/179 (50%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|121583453|ref|YP_973884.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120596707|gb|ABM40142.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 150
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ EDL+ FG+FG V SA+V+ +R ++ FGF+ ++DA+ AA++
Sbjct: 3 NKLYVGNLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I V E
Sbjct: 63 GMNGQPLGGRSITVNE 78
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + +L + F FG V S +V +TG S+G G++ M + A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSITVNEARPMEAR 85
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 128 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 186
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 187 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 243
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 244 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 296
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 36 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 93
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 94 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 143
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 144 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 201
Query: 279 VDRTE 283
+ E
Sbjct: 202 QKKVE 206
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 177 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 236
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 237 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 294
Query: 168 GREMRVRFS 176
+ V +
Sbjct: 295 TKPFYVALA 303
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A+ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVTDM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRREFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + SRG G++ + +A+ AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDNHG--SRGFGFVHFETHEAAQQAIVTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARAMEFT-----NIYVKNLHVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F E A++ +NG + RGR + V
Sbjct: 210 LFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S R+ S IF + NL ++ + L
Sbjct: 71 TMNFEVIRGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+ F FG ++S +V+ D G +R FGF+ F + +A + A +++NG R + V
Sbjct: 116 YDTFSTFGNILSCKVVCDNHG--SRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRRE 178
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRREFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALA 368
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 13/184 (7%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
Y+ N+P +D + L + F FG VLS VSR +T + G G++ SA A+ AL+
Sbjct: 219 YIKNVPYEWDDARLNQEFAQFGEVLSATVSRE-DTNQTLGFGFINFAEHESAVAAVEALN 277
Query: 163 GSD----VGGREMRVRFSI----DMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSW 212
G + + G E+ + + + R R A K +I ++ + LYV NL
Sbjct: 278 GKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGVN-LYVKNLDD 336
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGR 271
+V + LR+ F GT+ SARV+ D K +R FGF+ +S+ E A++ +NG +
Sbjct: 337 SVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKLIANK 396
Query: 272 TIIV 275
I V
Sbjct: 397 PIFV 400
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D +L + F FG +LS +V + E G+S G GY+ + +A AI L
Sbjct: 129 IFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKL 188
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + G+E++V + N R +S Y+ N+ + L
Sbjct: 189 DGMLIDGQEVQVGHFMRRNDRPD--------------IDSWTNCYIKNVPYEWDDARLNQ 234
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF 268
F +FG V+SA V + QT FGFI+F+ AA+ +LNG ++
Sbjct: 235 EFAQFGEVLSATVSREDTNQTLG-FGFINFAEHESAVAAVEALNGKEY 281
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 16/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S L E+F G V S+ V R+ T S G Y+ + A+ A+ +
Sbjct: 41 LYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAERAMDTM 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S S R+ ++V NL+ A+ + L +
Sbjct: 101 NFSMIKGKPCRIMWSQRDPSLRRSGVG---------------NIFVKNLNEAIDNKQLYD 145
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F FG ++S +V+ DR+G + +G++ + + +AA+ L+G G+ + V
Sbjct: 146 TFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGMLIDGQEVQV 200
>gi|295672357|ref|XP_002796725.1| 28 kDa ribonucleoprotein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283705|gb|EEH39271.1| 28 kDa ribonucleoprotein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 474
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 11/197 (5%)
Query: 85 DDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
D++ V ++R P E L++ NL + D L F+ FG + V + + ++G S+
Sbjct: 213 DEEEVVAPKKTRVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSK 272
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA--EALISPPKKIFVY 199
G GY+ + A A A +++ GR++ V F+ N+R+ A + S +
Sbjct: 273 GFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVDFA---NARSNAAPRDRAQSRAQNFGDQ 329
Query: 200 ESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAE 256
+SP L++GN++++ + F +G+++ R+ D + + FG++ FSS D
Sbjct: 330 KSPESDTLFIGNIAFSADESMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEA 389
Query: 257 RDAALSLNGTDFRGRTI 273
R A SLNG++ GR +
Sbjct: 390 RSAFESLNGSELAGRAM 406
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ N+ S D S + E F +G++L V + +PE+G +G GY+ SI+ A++A +L
Sbjct: 337 LFIGNIAFSADESMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESL 396
Query: 162 DGSDVGGREMRVRFSI 177
+GS++ GR MR+ FS
Sbjct: 397 NGSELAGRAMRLDFST 412
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 182 RTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
+ + E +++P K L++GNLSW V E LR+ F FG + R++ DR
Sbjct: 210 KAEDEEEVVAPKKTRVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSG 269
Query: 242 TTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIV 275
++ FG++ F++ DA + A + T+ GR + V
Sbjct: 270 RSKGFGYVEFTNAEDAVK-AHAAKKDTELDGRKLNV 304
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++GG+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 20/140 (14%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGN---------EVDDDSSV--------EEPRSR 96
GF V E+A +E+NGK+ +GG +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKE-IGGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATK 348
Query: 157 AIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 349 AVTEMNGRIVGSKPLYVALA 368
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 237
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 238 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 290
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 88 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 137
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 138 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 195
Query: 279 VDRTE 283
+ E
Sbjct: 196 QKKVE 200
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 171 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 230
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 231 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 288
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 289 TKPLYVALA 297
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 237
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 238 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 290
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 88 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 137
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 138 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 195
Query: 279 VDRTE 283
+ E
Sbjct: 196 QKKVE 200
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 171 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 230
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 231 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 288
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 289 TKPLYVALA 297
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRVVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDIKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRVVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 161 VYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDVM 219
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 276
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 277 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 329
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL D L + F PFGT+ S +V E G S+G G++ S A
Sbjct: 257 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 314
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G V + + V +
Sbjct: 315 TKAVTEMNGRIVATKPLYVALA 336
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG SRG G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G+++ G+ + V + N R R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V+ + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + ++A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 159 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGDDMDDERLK 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F ++G +S +V+ D G++ R FGF+S+ + + A+ +NGT+ G+T+ V
Sbjct: 209 ELFDKYGKTLSVKVMMDPTGKS-RGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKNE 271
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 134 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 192
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 193 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 249
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 250 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 302
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 42 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 99
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 100 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 149
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 150 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 207
Query: 279 VDRTE 283
+ E
Sbjct: 208 QKKVE 212
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 183 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 242
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 243 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 300
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 301 TKPLYVALA 309
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 276
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 277 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 329
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 210 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 269
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 270 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 327
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 328 TKPLYVALA 336
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 156 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 214
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 215 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 271
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 272 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 324
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 64 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 121
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 122 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 171
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 172 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 229
Query: 279 VDRTE 283
+ E
Sbjct: 230 QKKVE 234
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 205 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 264
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 265 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 322
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 323 TKPLYVALA 331
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERVSEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 159 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279
+ FG+FG +S +V+ D G+ ++ FGF+SF + A+ +NG + G+ I V
Sbjct: 209 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKVE 271
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 239 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 297
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 298 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 354
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 355 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 407
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 23/200 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 162 DGSDVGGREMRVRFSIDMNS---------RTRNAEALISPPKKIFVYESPHKL------- 205
+G + +ID + T N + + P +I + L
Sbjct: 88 NGMLLNXXXXEAS-NIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 146
Query: 206 -YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSL 263
++ NL ++ + L + F FG ++S +V+ D G ++ +GF+ F + +A A +
Sbjct: 147 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 204
Query: 264 NGTDFRGRTIIVREGVDRTE 283
NG R + V R E
Sbjct: 205 NGMLLNDRKVFVGRFKSRKE 224
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 288 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 347
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 348 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 405
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 406 TKPLYVALA 414
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQEVTDEEFRK 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG + SA + D++G+ +R FGF++FS+ D+ + A +N + +G+ + V
Sbjct: 252 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Query: 281 RTE 283
+ E
Sbjct: 311 KHE 313
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 220 DRQSKFEE--MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ ++ G+++ V + + R + K Y+
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR F FGT+ SA+V+ D
Sbjct: 337 N-LYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
S +P S LYV L S + L E+F G V S+ V R+ T S G Y+
Sbjct: 45 SANQPHS----ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 100
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ + A+ L+ + + G+ R+ +S + + + +++
Sbjct: 101 NNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIK 145
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTD 267
NL A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG
Sbjct: 146 NLDAAIDNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 204
Query: 268 FRGRTIIVREGVDRTE 283
+ + V + + +
Sbjct: 205 LNDKKVFVGHHISKKD 220
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 18/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V+ + G SRG G++ + SAK+AI L
Sbjct: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKL 188
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F + +YV NLS +DL+
Sbjct: 189 NGMLLNDKQVFVGPFLRKQERESTAD------KTRF-----NNVYVKNLSETTTEDDLKK 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS---LNGTDFRGRTIIVREG 278
FG FG + S V+ D G+ ++ FGF++F D DAA S LNG F + V +
Sbjct: 238 IFGEFGIITSTAVMRDADGK-SKCFGFVNF--DDPDDAARSVEALNGKKFDDKEWYVGKA 294
Query: 279 VDRTE 283
+ E
Sbjct: 295 QKKYE 299
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 91/186 (48%), Gaps = 15/186 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ R +YV NL + +L ++F FG + S V R+ + G S+ G++ + A
Sbjct: 215 KTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDDPDDAA 273
Query: 156 NAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
++ AL+G +E V ++ +M + + ++L K +E + LYV NL
Sbjct: 274 RSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK---FEGLN-LYVKNL 329
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRG 270
++ + L+ F FGT+ S +V+ D G +R GF++FS+ E AL T+ G
Sbjct: 330 DDSISDDKLKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASKAL----TEMNG 384
Query: 271 RTIIVR 276
+ ++ +
Sbjct: 385 KMVVSK 390
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + LYV NL S +L E+F FGT+ S +V R+P GISRG G++
Sbjct: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFV 367
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS---PP 193
+ A A+ ++G V + + V + R +A S PP
Sbjct: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPP 417
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LYVG+L +V L + F + G VVS RV D + + +G++++++ E AL L
Sbjct: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALDEL 101
Query: 264 NGTDFRGRTI 273
N T G+ I
Sbjct: 102 NFTPLNGKPI 111
>gi|357462751|ref|XP_003601657.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355490705|gb|AES71908.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 146
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
T++ +A +S + S KL++G LS+ V + LR+ F +G VV ARV+ DR+
Sbjct: 16 TQSTQAPVSSMLNYLRHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGR 75
Query: 243 TRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDR 281
+R FGF++F+S+ +ALS++G D GR I V DR
Sbjct: 76 SRGFGFVNFTSEESATSALSMDGQDLNGRNIRVSYANDR 114
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ L + D L + F +G V+ V + ETG SRG G++ S SA +A ++
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA-LS 95
Query: 161 LDGSDVGGREMRVRFSID 178
+DG D+ GR +RV ++ D
Sbjct: 96 MDGQDLNGRNIRVSYAND 113
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQEVTDEEFRK 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG + SA + D++G+ +R FGF++FS+ D+ + A +N + +G+ + V
Sbjct: 252 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Query: 281 RTE 283
+ E
Sbjct: 311 KHE 313
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 220 DRQSKFEE--MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ ++ G+++ V + + R + K Y+
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR F FGT+ SA+V+ D
Sbjct: 337 N-LYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 47 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 106
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 107 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDAAI 151
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 152 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 210
Query: 274 IVREGVDRTE 283
V + + +
Sbjct: 211 FVGHHISKKD 220
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 124 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 182
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ V ++ R+
Sbjct: 183 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNIANEVTDDEFRD 233
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V S+ + D++G+ +R FGF++F++ +A A LN DFRG+ + V
Sbjct: 234 LFAAFGDVTSSSLARDQEGK-SRGFGFVNFTTHEAAAKAVEDLNNKDFRGQDLYVGRAQK 292
Query: 281 RTE 283
+ E
Sbjct: 293 KHE 295
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 10/192 (5%)
Query: 54 GFRSVLAVVDEEAVVVEDEING------KDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
G+ V DE A +NG K VG + D + +A +YV N+
Sbjct: 163 GYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNI 222
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
E ++F FG V S ++R+ E G SRG G++ + +A A+ L+ D
Sbjct: 223 ANEVTDDEFRDLFAAFGDVTSSSLARDQE-GKSRGFGFVNFTTHEAAAKAVEDLNNKDFR 281
Query: 168 GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGR 225
G+++ V + + R + K Y+ + LY+ NL V E LR F
Sbjct: 282 GQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVN-LYIKNLDDEVDDEKLRTLFAD 340
Query: 226 FGTVVSARVLHD 237
FG + SA+V+ D
Sbjct: 341 FGPITSAKVMRD 352
>gi|367043706|ref|XP_003652233.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
gi|346999495|gb|AEO65897.1| hypothetical protein THITE_2113488 [Thielavia terrestris NRRL 8126]
Length = 533
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ L+V NL D + L E F+ V V + ++G SRG GY+ + +A+ A
Sbjct: 286 KSATLFVGNLGWGVDDNALYEEFQNNEGVTGARVVTDKDSGRSRGFGYVDFETPEAAEKA 345
Query: 158 IIALDGSDVGGREMRVRF----SIDMNSRTRNAE------ALISPPKKIFVYESPHKLYV 207
+G+ + GREMR+ F S D R AE +ISP L+V
Sbjct: 346 YNDKNGAFLQGREMRLDFAAKPSADSTPNARAAERARKHGDVISP--------ESDTLFV 397
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNLS++ E + F + V S R+ D++ + F +++FSS + AA +LNG+
Sbjct: 398 GNLSFSANEESVSAFFNKVAKVQSLRIPTDQESGRPKGFAYVTFSSVDDAKAAFEALNGS 457
Query: 267 DFRGRTI 273
D GR +
Sbjct: 458 DLDGRPV 464
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL S + + F V S+ + + E+G +G Y+T S++ AK A AL
Sbjct: 395 LFVGNLSFSANEESVSAFFNKVAKVQSLRIPTDQESGRPKGFAYVTFSSVDDAKAAFEAL 454
Query: 162 DGSDVGGREMRVRFS 176
+GSD+ GR +R+ F+
Sbjct: 455 NGSDLDGRPVRLDFA 469
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERD 258
E L+VGNL W V L F V ARV+ D+ +R FG++ F + +A
Sbjct: 285 EKSATLFVGNLGWGVDDNALYEEFQNNEGVTGARVVTDKDSGRSRGFGYVDFETPEAAEK 344
Query: 259 AALSLNGTDFRGRTI 273
A NG +GR +
Sbjct: 345 AYNDKNGAFLQGREM 359
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + L +F +GTV SV V R+ G SRG G++ + +AK A+ +L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESL 262
Query: 162 DGSDVGGREMRVRFSIDMNSR-----TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
G +G +++ V ++ + R + ++ I+ P + LYV NLS ++
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRW-----SNLYVKNLSESMNE 317
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIV 275
LR FG +G +VSA+V+ G+ ++ FGF+ FS+ E + A LNG G+ I+V
Sbjct: 318 TRLREIFGCYGQIVSAKVMCHENGR-SKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVV 376
Query: 276 R 276
R
Sbjct: 377 R 377
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 15/191 (7%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R+R LYV NL S S L MF PFG++LS +V E G S+G G++ + S
Sbjct: 106 RTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVE--ENGQSKGFGFVQFDTEQS 163
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A +A AL GS V G+++ V I+ + R A + +YV NL
Sbjct: 164 AVSARSALHGSMVYGKKLFVAKFINKDERAAMAGN-----------QDSTNVYVKNLIET 212
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRT 272
V + L F ++GTV S V+ D G+ +R FGF++F + + + A SL G +
Sbjct: 213 VTDDCLHTLFSQYGTVSSVVVMRDGMGR-SRGFGFVNFCNPENAKKAMESLCGLQLGSKK 271
Query: 273 IIVREGVDRTE 283
+ V + + + E
Sbjct: 272 LFVGKALKKDE 282
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 91/184 (49%), Gaps = 17/184 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L +L++ F V+SV + RN TG S Y+ S SA NA+ L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ SD+ G+ MR+ +S D+ R R + LYV NL ++ L
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFAN-------------LYVKNLDSSITSSCLE 129
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F FG+++S +V+ + GQ ++ FGF+ F ++ +A S L+G+ G+ + V + +
Sbjct: 130 RMFCPFGSILSCKVVEE-NGQ-SKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFI 187
Query: 280 DRTE 283
++ E
Sbjct: 188 NKDE 191
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ + R+ T S G Y+ ++ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+NAI +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R
Sbjct: 203 NGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTDEEFRE 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +FG + SA + D + +R FGF++F+S AA+ +LN DF+ + + V
Sbjct: 254 LFEKFGEITSATLARDSESGKSRGFGFVNFTSHESAAAAVDNLNEKDFKSQKLYV 308
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + E E+F+ FG + S ++R+ E+G SRG G
Sbjct: 222 DRQSKFEE--MKANFTNVYVKNIDQDTTDEEFRELFEKFGEITSATLARDSESGKSRGFG 279
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S SA A+ L+ D +++ V + + R + K Y+
Sbjct: 280 FVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV 339
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ LY+ NLS + E LR+ F +GT+ SA+V+ D + SSD+E++A
Sbjct: 340 N-LYIKNLSDDIDDEKLRDLFSGYGTITSAKVMRDNLAAES--------SSDSEKEA 387
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 116 NYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKALHD 160
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G ++ +GF+ + +++A ++A +NG + + V
Sbjct: 161 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 214
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL S D L + F FG ++S +V+ + +G S+G G++ + SA+
Sbjct: 120 RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQ 178
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI L+G + +++ V + R A K F +YV NL+ +
Sbjct: 179 KAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN------KTKFT-----NVYVKNLAESTT 227
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTI 273
+DL+N FG +G + SA V+ D +G+ ++ FGF++F + DA R A SLNG F +
Sbjct: 228 DDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAAR-AVESLNGHKFDDKEW 285
Query: 274 IVREGVDRTE 283
V ++E
Sbjct: 286 YVGRAQKKSE 295
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L + F GTV++V V R+ T S G GY+ + A AI L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +RV +S S R+ +++ NL ++ + L +
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAG---------------NIFIKNLDESIDHKALHD 142
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG +VS +V D GQ ++ +GF+ ++++ A+ LNG + + V +
Sbjct: 143 TFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR 201
Query: 281 RTE 283
R E
Sbjct: 202 RQE 204
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 12/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L F +G + S V ++ E G S+G G++ + + A A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + + R R + L K LYV NL ++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF----QSSNLYVKNLDPSISD 331
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
E L+ F FGTV S++V+ D G T++ GF++F++ E A+S L+G + + V
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPNG-TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F PFGTV S +V R+P G S+G G++
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFV 363
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ L G + + + V + R +A S
Sbjct: 364 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFS 408
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 93/184 (50%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL RS D + + F FG +LS +V+++ E G S+G G++ + +A +I +
Sbjct: 101 VFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ENGTSKGYGFVHFETEEAANKSIEKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + E LRN
Sbjct: 160 NGMLLNGKKVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDLSEEQLRN 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F +FG + S +V+ G+ ++ FGF++F S +A A +LNG + G+ + V
Sbjct: 211 MFEKFGKITSYKVMSKDDGK-SKGFGFVAFESPEAAETAVDALNGKELVEGKPLYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 19/183 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L MF+ FG + S +V + + G S+G G++ S +A+ A+ AL
Sbjct: 194 VYVKNFGEDLSEEQLRNMFEKFGKITSYKVM-SKDDGKSKGFGFVAFESPEAAETAVDAL 252
Query: 162 DGSD-VGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + V G+ + V + R R EAL +++ Y+ + LYV NL +
Sbjct: 253 NGKELVEGKPLYVGRAQKKAERQQELKRRFEALKM--ERLNRYQGVN-LYVKNLDDTIDD 309
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQ----TTRV--FGFISFSSDAERDAALSLNGTDFRG 270
E LR F FGT+ SA+V+ + TTR FGF+ FSS E A+ T+ G
Sbjct: 310 ERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAV----TEMNG 365
Query: 271 RTI 273
R +
Sbjct: 366 RIV 368
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 17/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L + F G VLS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR +R+ +S S ++ +++ NL ++ + +
Sbjct: 71 TMNFDLIRGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDRSIDNKAM 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
+ F FG ++S +V D G T++ +GF+ F ++ + ++ +NG G+ + V
Sbjct: 116 YDTFSAFGNILSCKVAQDENG-TSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRF 174
Query: 279 VDRTE 283
+ R E
Sbjct: 175 IPRKE 179
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 17/195 (8%)
Query: 92 EPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+P SR + +++ NL +S D L + F FGT+LS +V+ +G S+G G++
Sbjct: 121 DPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILSCKVATEI-SGESKGYGFVQYEQ 179
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
SA+NAI L+G + +++ V + R + E + PK + +YV NL
Sbjct: 180 DESAQNAINELNGMLLNDKKVYVGPFV----RKQERENVFGSPKF-------NNVYVKNL 228
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDF 268
S + ++L+ FG+FG + S V+ G+ +R FGF++F + DA R A LNG
Sbjct: 229 SESTTEDNLKEMFGKFGPITSVIVVRADDGK-SRCFGFVNFENPDDAAR-AVEDLNGKKL 286
Query: 269 RGRTIIVREGVDRTE 283
+ + V ++E
Sbjct: 287 DDKELYVGRAQKKSE 301
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 19/184 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G+V+SV V R+ T +S G Y+ S A A+ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAMEML 103
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + V G+ +R+ +S D +SR A +++ NL ++ + L
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGA----------------ANIFIKNLDKSIDNKALF 147
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
+ F FGT++S +V + G+ ++ +GF+ + D A++ LNG + + V V
Sbjct: 148 DTFSAFGTILSCKVATEISGE-SKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFV 206
Query: 280 DRTE 283
+ E
Sbjct: 207 RKQE 210
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELL-EMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ S +E + + LY+ NL S D E L E+F FGT+ S +V R+ G+++G G+
Sbjct: 311 EKSNKETADKNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRD-SNGVNKGSGF 369
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ S A A++A++G VG + + V + R +A S
Sbjct: 370 VAFKSSEDASRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFS 415
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL S D L + F FG ++S +V+ + +G S+G G++ + SA+
Sbjct: 104 RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQ 162
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI L+G + +++ V + R A K F +YV NL+ +
Sbjct: 163 KAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN------KTKFT-----NVYVKNLAESTT 211
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTI 273
+DL+N FG +G + SA V+ D +G+ ++ FGF++F + DA R A SLNG F +
Sbjct: 212 DDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAAR-AVESLNGHKFDDKEW 269
Query: 274 IVREGVDRTE 283
V ++E
Sbjct: 270 YVGRAQKKSE 279
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L + F GTV++V V R+ T S G GY+ + A AI L
Sbjct: 22 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 81
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +RV +S S R+ +++ NL ++ + L +
Sbjct: 82 NYIPLYGKPIRVMYSHRDPSVRRSGAG---------------NIFIKNLDESIDHKALHD 126
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG +VS +V D GQ ++ +GF+ ++++ A+ LNG + + V +
Sbjct: 127 TFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR 185
Query: 281 RTE 283
R E
Sbjct: 186 RQE 188
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 12/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L F +G + S V ++ E G S+G G++ + + A A+ +L
Sbjct: 201 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 259
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + + R R + L K LYV NL ++
Sbjct: 260 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF----QSSNLYVKNLDPSISD 315
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
E L+ F FGTV S++V+ D G T++ GF++F++ E A+S L+G + + V
Sbjct: 316 EKLKEIFSPFGTVTSSKVMRDPNG-TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 374
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F PFGTV S +V R+P G S+G G++
Sbjct: 289 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFV 347
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ L G + + + V + R +A S
Sbjct: 348 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFS 392
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 213 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 271
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 272 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 328
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 329 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 381
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 178
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 179 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 228
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 229 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 286
Query: 279 VDRTE 283
+ E
Sbjct: 287 QKKVE 291
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 262 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 321
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 322 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 379
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 380 TKPLYVALA 388
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 4 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 119
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V+ + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 120 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 169
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 96 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSS 153
Query: 151 INSAKNAIIALDGSDVGGREMRV 173
A A+ ++G VG + + V
Sbjct: 154 PEEATKAVTEMNGRIVGSKPLYV 176
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 7/178 (3%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
S +EE RA LYV NL + +E+F FG V S V + E G S+G G++
Sbjct: 224 QSKLEE--MRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSA-VIQTDEEGKSKGFGFV 280
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
+ A A+ L +D G+++ V + R K K+ Y+ +
Sbjct: 281 NFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVN- 339
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LY+ NL V E LR F FGT+ S +V+ D KG T++ FGF+ FSS E A++
Sbjct: 340 LYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKG-TSKGFGFVCFSSPDEATKAVA 396
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 12/169 (7%)
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L + F FG VLS +V+ + E G SRG GY+ + +A++AI A++G + +++ V +
Sbjct: 158 LHDTFAAFGNVLSCKVATD-EQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGY 216
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
I R E + + F LYV NL V + F +FG V SA +
Sbjct: 217 HISRKERQSKLEEM----RAHFT-----NLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQ 267
Query: 236 HDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTE 283
D +G+ ++ FGF++F + + A+ +L+ TDF G+ + V + E
Sbjct: 268 TDEEGK-SKGFGFVNFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAE 315
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 87/185 (47%), Gaps = 11/185 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ ++ + A+ L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK--PEDL 219
+ S + GR R+ +S R+ + IF+ ++ +L + A K P L
Sbjct: 106 NYSLIKGRACRIMWS------QRDPALRKTGQGNIFI-KNLDELIDNKVRTAQKTPPHAL 158
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
+ F FG V+S +V D +G+ +R +G++ + +++A A ++NG + + V
Sbjct: 159 HDTFAAFGNVLSCKVATDEQGR-SRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYH 217
Query: 279 VDRTE 283
+ R E
Sbjct: 218 ISRKE 222
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+S+ E S+ + LY+ NL D +L F+PFGT+ S +V R+ + G S+G G++
Sbjct: 325 ESAKMEKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRD-DKGTSKGFGFV 383
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
S + A A+ ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 384 CFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 438
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 94/189 (49%), Gaps = 14/189 (7%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL ++ D L E F FGT+LS +V+ + E G S+G G++ +A+
Sbjct: 130 RSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAMD-EAGQSKGFGFVQYEKEEAAQ 188
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
NAI +L+G + + + V + R + + K F + ++V NLS +
Sbjct: 189 NAIKSLNGMLINDKPVFVGPFLRKQERDHSFD------KTKF-----NNVFVKNLSESTT 237
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTII 274
EDL FG +G++ SA V+ G+ +R FGFI+F + DA A LNG +
Sbjct: 238 KEDLLKVFGEYGSITSAVVMIGMDGK-SRCFGFINFENPDAASRAVQELNGKKINDKEWY 296
Query: 275 VREGVDRTE 283
V ++E
Sbjct: 297 VGRAQKKSE 305
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S S+L E+F G V+SV V R+ + S G Y+ + A A+ L
Sbjct: 48 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEVL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + + +RV +S S R+ A +++ NL + + L
Sbjct: 108 NFAVLNNKPIRVMYSNRDPSSRRSGSA---------------NIFIKNLDKTIDNKTLHE 152
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FGT++S +V D GQ ++ FGF+ + +A ++A SLNG + + V
Sbjct: 153 TFSSFGTILSCKVAMDEAGQ-SKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV 206
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S +LL++F +G++ S V + G SR G++ + ++A A+ L
Sbjct: 227 VFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMD-GKSRCFGFINFENPDAASRAVQEL 285
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + +E V + +M + R ++L K Y+ LY+ NL ++
Sbjct: 286 NGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADK---YQG-LNLYLKNLDDSIGD 341
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
+ LR F FG + S +V+ D+ G ++ GF++FS+ E AL+ +NG G+ + V
Sbjct: 342 DQLRELFSNFGKITSYKVMRDQNG-LSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 400
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S+++ + + LY+ NL S +L E+F FG + S +V R+ + G+S+G G++
Sbjct: 315 EQSLKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRD-QNGLSKGSGFV 373
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA-------------LISPP 193
+ A A+ ++G + G+ + V F+ R +A ++P
Sbjct: 374 AFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPR 433
Query: 194 KKIFVYESPHKLYVGNLSWAVKP 216
++ +P +L+ G A+ P
Sbjct: 434 LPMYPPMAPQQLFYGQAPPAMIP 456
>gi|358365933|dbj|GAA82554.1| ribosome biogenesis [Aspergillus kawachii IFO 4308]
Length = 721
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E P S EL+V +LP S L E F + +PET S+G G++T
Sbjct: 29 ETPASNQPRRELFVRSLPASTTTESLTEYFSQSYVIKHAVAVTDPETKQSKGYGFVTFAD 88
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS------IDMN-SRTR-NAEALISPPKKIFVYESP 202
+ AK A+ +GS G++++V ++ +D N R++ +AEAL K+ +
Sbjct: 89 LEDAKAALEEFNGSVFEGKKIKVEYAQPRHRVVDENLGRSKPSAEALEQKKKREDQRAAA 148
Query: 203 H-KLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
KL V NL W++K PEDL F FG V V +KG FGF+ + A
Sbjct: 149 QPKLIVRNLPWSIKEPEDLAVLFRSFGKV--KYVTLPKKGSQLAGFGFVVLRGKKNAEKA 206
Query: 261 L-SLNGTDFRGRTIIVREGVDRT 282
L ++NG + GRT+ V V++
Sbjct: 207 LQAVNGKEVDGRTLAVDWAVEKN 229
>gi|239818248|ref|YP_002947158.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239804825|gb|ACS21892.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 181
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSVVVNE 78
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 48/82 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S S+L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSVVVNEARPMEAR 85
>gi|374376206|ref|ZP_09633864.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
gi|373233046|gb|EHP52841.1| RNP-1 like RNA-binding protein [Niabella soli DSM 19437]
Length = 110
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+YVGNLSW +K +DL+N F +G V SA+++ D+ ++ FGF+ ++D E AA+ +L
Sbjct: 3 IYVGNLSWNLKDQDLQNLFAPYGEVTSAKIVSDKFTNRSKGFGFVEMATDEEAKAAIEAL 62
Query: 264 NGTDFRGRTIIVRE 277
NGT+ GR I+V E
Sbjct: 63 NGTEVDGRNIVVNE 76
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L +F P+G V S ++ + T S+G G++ M + AK AI AL
Sbjct: 3 IYVGNLSWNLKDQDLQNLFAPYGEVTSAKIVSDKFTNRSKGFGFVEMATDEEAKAAIEAL 62
Query: 162 DGSDVGGREMRVRFS 176
+G++V GR + V S
Sbjct: 63 NGTEVDGRNIVVNES 77
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 197 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 255
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 256 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 312
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 313 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 365
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ + R+ T S G Y+ AK A+ L
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 72
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + GR +R+ +S D + R + +++ NL ++ + L
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGGGVG------------NIFIKNLDKSIDNKALY 120
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGV 279
+ F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 121 DTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 178
Query: 280 DRTE 283
R E
Sbjct: 179 SRKE 182
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 246 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 305
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 306 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 363
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 364 TKPLYVALA 372
>gi|119501270|ref|XP_001267392.1| ribosome biogenesis (Nop4), putative [Neosartorya fischeri NRRL
181]
gi|119415557|gb|EAW25495.1| ribosome biogenesis (Nop4), putative [Neosartorya fischeri NRRL
181]
Length = 732
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 91/192 (47%), Gaps = 14/192 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V +LP S L E F + V +PET + +G G++T + A+ A+
Sbjct: 44 LFVRSLPTSATTESLTEYFSQSYVIKHAIVVNDPETKLCKGYGFVTFADLEDAQAALKEF 103
Query: 162 DGSDVGGREMRVRFS------IDMN-SRTRNAEA---LISPPKKIFVYESPHKLYVGNLS 211
+GS G+ +RV ++ ID N ++ A A L ++ P KL V NL
Sbjct: 104 NGSVFEGKTIRVDYAQPRHREIDENLGKSVPAPAALELKQQREQQKTSTQPPKLIVRNLP 163
Query: 212 WAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR 269
W++K PEDL HF FG V V +KG FGF+ + AL ++NG +
Sbjct: 164 WSIKEPEDLAVHFRSFGKV--KYVTLPKKGDQLAGFGFVVLRGKKNAEKALQAVNGKEVD 221
Query: 270 GRTIIVREGVDR 281
GRT+ V V++
Sbjct: 222 GRTLAVDWAVEK 233
>gi|452989554|gb|EME89309.1| hypothetical protein MYCFIDRAFT_149907 [Pseudocercospora fijiensis
CIRAD86]
Length = 500
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 87/176 (49%), Gaps = 4/176 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + D L F+ FG + V + + ++G S+G GY+ + A A+ A
Sbjct: 247 LFIGNLSWNVDEEWLTREFEEFGELKGVRIITDRDSGRSKGFGYVEFENAEDAAKALEAK 306
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF---VYESPHKLYVGNLSWAVKPED 218
+G+++ R +R+ FS+ + +N + ++ + E L+VGNLS+ +
Sbjct: 307 NGAELDNRAIRLDFSVPRQNNAQNPQQRGQERRQQYGDKASEPSQTLFVGNLSFDATEDM 366
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+R +F G++ R+ DR+ + FG++ S E AA +L G D GR +
Sbjct: 367 VREYFEEHGSINGIRLPTDRESGAPKGFGYVEMGSIDEAKAAYEALQGADLGGRPM 422
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 102 LYVCNLPRSFDISELL--EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL SFD +E + E F+ G++ + + + E+G +G GY+ MGSI+ AK A
Sbjct: 353 LFVGNL--SFDATEDMVREYFEEHGSINGIRLPTDRESGAPKGFGYVEMGSIDEAKAAYE 410
Query: 160 ALDGSDVGGREMRVRFSI 177
AL G+D+GGR MR+ +S
Sbjct: 411 ALQGADLGGRPMRLDYST 428
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLHKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|390608551|dbj|BAM21252.1| RRM-containing protein [Ephydatia fluviatilis]
Length = 431
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 24/207 (11%)
Query: 81 GNEVDDDSSVEEPRS-RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
G+ D +S P ++P +++V L +L E F FG VL + R+P T
Sbjct: 30 GSHSDGATSPTTPNGDTSKPTKIFVGGLSWQTSSEKLAEYFARFGEVLECNIMRDPSTRR 89
Query: 140 SRGCGYLTMGSINSAKNAI-------IALDGSDVGGREMRVRFSIDMNSRTRNAEALISP 192
SRG G++T S + I LD ++ + I + + R ++SP
Sbjct: 90 SRGFGFITFKDPASVSKVLETHAQEPIVLDDKNIDPK-------IAVPPK-RPGNKVMSP 141
Query: 193 PKKIFVYESP---HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
P + +P +++VG LS DL+ +F FGT+ ++++DR R FGF+
Sbjct: 142 P-----WTAPSQTKRIFVGGLSSDSTEMDLQEYFQEFGTIQDVQLMYDRNTSRHRGFGFV 196
Query: 250 SFSSDAERDAALSLNGTDFRGRTIIVR 276
+F S+ + S+ D RG+ + V+
Sbjct: 197 TFDSEKPAEKVCSIQYHDIRGKKVEVK 223
>gi|425783198|gb|EKV21057.1| Nucleolin protein Nsr1, putative [Penicillium digitatum Pd1]
Length = 467
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 3/177 (1%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ NL + D + F FG + V + + ETG SRG GY+ S A A+
Sbjct: 211 ANLFIGNLSWNVDEEWVQREFSEFGELSGVRIVTDRETGRSRGFGYVEYNSAADAAKAME 270
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPE 217
A G+D+ GR + + ++ + T+ A+ + SP L+VGNL ++ +
Sbjct: 271 AKKGTDLDGRTINLDYAAPRQANTQGADRSQDRARSYGDQTSPESDTLFVGNLPFSATED 330
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 273
L FG G+V+ R+ +++ + FG++ FSS D + A +LNG + GR I
Sbjct: 331 ALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAALNGHELEGRAI 387
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S L E+F G+VL + + ETG +G GY+ SI+ AK A AL
Sbjct: 318 LFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAAL 377
Query: 162 DGSDVGGREMRVRFS 176
+G ++ GR +R+ FS
Sbjct: 378 NGHELEGRAIRLDFS 392
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 229 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 287
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 288 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 344
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 345 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 397
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 137 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 194
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 195 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 244
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 245 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 302
Query: 279 VDRTE 283
+ E
Sbjct: 303 QKKVE 307
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 278 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 337
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 338 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 395
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 396 TKPLYVALA 404
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG SRG G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G+++ G+ + V + N R R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V+ + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + ++A AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 159 NGMLLNDRKVFVGRFK----SR-KEREAELGAKAKEFT-----NVYIKNFGDDMDDERLK 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F ++G +S +V+ D G++ R FGF+S+ + + A+ +NGT+ G+T+ V
Sbjct: 209 ELFDKYGKTLSVKVMMDPTGKS-RGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQ 267
Query: 280 DRTE 283
+ E
Sbjct: 268 KKNE 271
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ V G+ +R+ +S S ++ +++ NL ++ + L
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
+ F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRKE 178
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 68 VVED----EINGKDN-VGGNEVDDDSSVEEPR----------SRARPCELYVCNLPRSFD 112
VED E+NGK VG + ++ E R SR + LY+ NL + D
Sbjct: 247 AVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTID 306
Query: 113 ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172
+L + F PFG++ S +V E G S+G G++ S A A+ ++G VG + +
Sbjct: 307 DEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 173 VRFS 176
V +
Sbjct: 365 VALA 368
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLHKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 198
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V E+ R
Sbjct: 199 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYVKNIDPEVTDEEFRE 249
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
FG+FG + SA + D G+ +R FGF+++ A+ LN DF G+ + V
Sbjct: 250 LFGKFGDITSATISRDDSGK-SRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQK 308
Query: 281 RTE 283
+ E
Sbjct: 309 KHE 311
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ E E+F FG + S +SR+ ++G SRG G
Sbjct: 218 DRQSKFEE--MKANFTNVYVKNIDPEVTDEEFRELFGKFGDITSATISRD-DSGKSRGFG 274
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYE 200
++ +A+ A+ L+ D G+++ V + + R R EA + +K Y+
Sbjct: 275 FVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELRRQYEA--ARLEKASKYQ 332
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG 240
+ LYV NL+ V E LR F FGT+ SA+V+ D G
Sbjct: 333 GVN-LYVKNLTDDVDDEKLRELFSAFGTITSAKVMRDTVG 371
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+
Sbjct: 50 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 109
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ + + GR R+ +S + + + +++ NL A+ + L
Sbjct: 110 DLNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKAL 154
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
+ F FG ++S +V D G ++ +GF+ + +++A +A +NG + + V
Sbjct: 155 HDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHH 213
Query: 279 VDRTE 283
+ + +
Sbjct: 214 ISKKD 218
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G+S+G G++ + +A NAI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V+ E+ R
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + SA + D +G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 242 LFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
Query: 281 RTE 283
+ E
Sbjct: 301 KHE 303
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E ++F+ FG + S +SR+ E G SRG G
Sbjct: 210 DRQSKFEE--MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ +V +++ V + + R + K Y+
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV 326
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V + LR FG +GT+ SA+V+ D
Sbjct: 327 N-LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 22/210 (10%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
DN EV ++VE P + ++P LYV L S + L E+F G V S+ V R+
Sbjct: 20 DNAPAPEV---TAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD 76
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
T S G Y+ + A+ L+ + + G+ R+ +S + + +
Sbjct: 77 AVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQG------ 130
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SS 253
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + ++
Sbjct: 131 ---------NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVHYETA 180
Query: 254 DAERDAALSLNGTDFRGRTIIVREGVDRTE 283
+A +A +NG + + V + + +
Sbjct: 181 EAANNAIKHVNGMLLNDKKVFVGHHISKKD 210
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 168 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 226
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 227 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 283
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 284 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 336
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 76 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 133
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 134 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 183
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 184 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 241
Query: 279 VDRTE 283
+ E
Sbjct: 242 QKKVE 246
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L E F P G +LS+ V R+ T S G Y+ A+ A+ ++ + G+ +R+ +
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
S S ++ I ++ NL ++ + L + F FG ++S +V+
Sbjct: 62 SQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYDTFSAFGNILSCKVV 106
Query: 236 HDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
D G ++ +GF+ F + +A A +NG R + V
Sbjct: 107 CDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 145
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 217 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 276
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 277 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 334
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 335 TKPLYVALA 343
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 360 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 418
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 419 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 475
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 476 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 528
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 268 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 325
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + K F +Y+ N + E L++
Sbjct: 326 NGMLLNDRKV---FVGRFKSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLKD 376
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
FG+FG +S +V+ D G+ ++ FGF+SF + A+ +NG + G+ I V
Sbjct: 377 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 435
Query: 281 RTE 283
+ E
Sbjct: 436 KVE 438
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 60/145 (41%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R +R
Sbjct: 399 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 458
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL D L + F PFGT+ S +V E G S+G G++ S A A
Sbjct: 459 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 516
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G V + + V + R
Sbjct: 517 VTEMNGRIVATKPLYVALAQRKEER 541
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L EMF +G LSV+V + + G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A D++NGKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|374812572|ref|ZP_09716309.1| RNA-binding protein [Treponema primitia ZAS-1]
Length = 90
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
KLYVGNLS+ ++LR+ F FGTV S +++ DR ++ FGF+ S+DAE AA+S
Sbjct: 4 KLYVGNLSYNTHEDNLRSLFSAFGTVESVKIITDRDTGNSKGFGFVEMSTDAEAQAAISG 63
Query: 263 LNGTDFRGRTIIVREGVDR 281
N TD GR I V E +D+
Sbjct: 64 TNSTDLDGRAIKVNEAMDK 82
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL + L +F FGTV SV++ + +TG S+G G++ M + A+ AI
Sbjct: 4 KLYVGNLSYNTHEDNLRSLFSAFGTVESVKIITDRDTGNSKGFGFVEMSTDAEAQAAISG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRN 185
+ +D+ GR ++V ++D R N
Sbjct: 64 TNSTDLDGRAIKVNEAMDKPRRESN 88
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + +++ V + I R E + K F +YV N+S E+ R+
Sbjct: 214 NNMLLNEKKVYVGYHIPKKDRQSKFEEM----KANFT-----NIYVKNISLEATDEEFRD 264
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V S+ + D +G+ +R FGF++F++ + A LNG +FRG+ + V
Sbjct: 265 LFAKYGDVTSSSLARDSEGK-SRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQK 323
Query: 281 RTE 283
+ E
Sbjct: 324 KHE 326
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ P+S A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 56 SAAPHPQSSA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVN 112
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S + + A+ L+ + + GR R+ +S + + + +++
Sbjct: 113 YNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 157
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D
Sbjct: 158 KNLDVAIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETD 203
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ E ++F +G V S ++R+ E G SRG G
Sbjct: 233 DRQSKFEE--MKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFG 289
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + A A+ L+G + G+++ V + + R + K Y+
Sbjct: 290 FVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 349
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NL+ + + LR F +G + SA+V+ D
Sbjct: 350 N-LYIKNLADDIDDDKLRQMFSEYGPITSAKVMRD 383
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 5/169 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A+ LY+ NL S E EMF+ +G V S V + E G S+G G++ A+
Sbjct: 221 KAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVD-EEGNSKGFGFVNYEHHEEAQ 279
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
+A+ AL +D+ G+++ V + R K K+ Y+ + LY+ NL
Sbjct: 280 SAVDALHDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVN-LYIKNLEDD 338
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
V E LR F FGT+ S +V+ D K T++ FGF+ FSS E A++
Sbjct: 339 VDDEKLRAEFEPFGTITSCKVMRDDKS-TSKGFGFVCFSSPDEATKAVA 386
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + + A+ L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEQIDNKALHD 150
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V+S +V D G+ ++ +GF+ + + +A A ++NG + + V +
Sbjct: 151 TFAAFGNVLSCKVATDEHGR-SKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHIS 209
Query: 281 RTE 283
R E
Sbjct: 210 RKE 212
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LY+ NL D +L F+PFGT+ S +V R+ + S+G G++ S
Sbjct: 320 EKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRD-DKSTSKGFGFVCFSSP 378
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 379 DEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 428
>gi|171056877|ref|YP_001789226.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
gi|170774322|gb|ACB32461.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
Length = 157
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL+++V+ EDL F +FG V SA+V+ DR+ ++ FGF+ SD E AA++
Sbjct: 3 NKLYVGNLAYSVRDEDLNEAFSQFGAVNSAKVMMDRETGRSKGFGFVEMGSDPEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVREGVDRTE 283
LNG GR I+V E R +
Sbjct: 63 GLNGQAIGGRAIVVNEARPRED 84
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S +L E F FG V S +V + ETG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLAYSVRDEDLNEAFSQFGAVNSAKVMMDRETGRSKGFGFVEMGSDPEAQAAING 63
Query: 161 LDGSDVGGREMRV 173
L+G +GGR + V
Sbjct: 64 LNGQAIGGRAIVV 76
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 86/174 (49%), Gaps = 10/174 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D L E+F FG LSV+V + E G SRG G++ A+ A+ +
Sbjct: 193 IYVKNFEGDMDDECLQELFSQFGKTLSVKVMVD-ENGQSRGFGFVNFEKHEEAQKAVSNM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVGNLSWAVKPEDL 219
+G ++GGR + V + + R + K+ V Y+ + LYV NL + E L
Sbjct: 252 NGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVN-LYVKNLDDIIDDEKL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
R F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 311 RKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A AI +
Sbjct: 101 IFIKNLDDSIDNKALYDTFSTFGNILSCKVVCD-ENG-SRGFGFVHFETHEAANQAINTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + F +YV N + E L+
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-QEREAELGARALEFT-----NIYVKNFEGDMDDECLQE 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F +FG +S +V+ D GQ +R FGF++F E A+S +NG + GR + V
Sbjct: 210 LFSQFGKTLSVKVMVDENGQ-SRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQK 268
Query: 281 RTE 283
R+E
Sbjct: 269 RSE 271
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D +L + F P+G + S +V E G S+G G++ S
Sbjct: 285 QERVNRYQGVNLYVKNLDDIIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 92 EPRSRAR-----PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
EP S+A+ +++ +L D L + F PFG V +V R+ T S+G G++
Sbjct: 18 EPGSQAKVDTSKHFHVFIGDLSPEVDNKALKDAFAPFGEVSDAKVIRDSTTLKSKGYGFV 77
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK----KIFVYESP 202
+ A+ AI ++G +G R +R ++ + T + S P+ +F P
Sbjct: 78 SYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGTDGQQ---SKPELSYDDVFNQTGP 134
Query: 203 HK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDA 259
+Y+GN++ +V EDLR F +FG +V R+ T+ F F+ F D+ +A
Sbjct: 135 DNTSVYIGNVNQSVNDEDLRAAFDKFGRIVEVRIFK------TQGFAFVRFDKKDSACNA 188
Query: 260 ALSLNGTDFRGRTI 273
+ +NGT+ G+T+
Sbjct: 189 IVKMNGTEIGGQTV 202
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 13/106 (12%)
Query: 169 REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT 228
REM+V ++ + S +A + K V+ +G+LS V + L++ F FG
Sbjct: 9 REMKVNWATEPGS-----QAKVDTSKHFHVF-------IGDLSPEVDNKALKDAFAPFGE 56
Query: 229 VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
V A+V+ D ++ +GF+S+ E + A+ +NG RTI
Sbjct: 57 VSDAKVIRDSTTLKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTI 102
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N+ +S + +L F FG ++ V + + ++G ++ +SA NAI+ +
Sbjct: 139 VYIGNVNQSVNDEDLRAAFDKFGRIVEVRIFK------TQGFAFVRFDKKDSACNAIVKM 192
Query: 162 DGSDVGGREMRVRF--SIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+G+++GG+ ++ + + + ++ +NA A + + + P+ Y
Sbjct: 193 NGTEIGGQTVKCSWGRTPEGHNNQQNAAANYNQMQGAYGAYGPYGAYT 240
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + +G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ S +V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 310 LRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R +GF+ F + +A A ++NG R + V
Sbjct: 118 TFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHV 207
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ V +D R
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNIAPDVTEDDFRE 258
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG V S+ + D++G+ +R FGF++F++ A+ LNG DF G+ + V
Sbjct: 259 LFEKFGDVTSSSLARDQEGK-SRGFGFVNFTTHESASKAVDDLNGKDFHGQDLYVGRAQK 317
Query: 281 RTE 283
+ E
Sbjct: 318 KHE 320
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATADGEKALEEL 120
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + +N + +++ NL A+ + L +
Sbjct: 121 NYTLIKGRPCRIMWSQRDPALRKNGQG---------------NVFIKNLDVAIDNKALHD 165
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G ++ +GF+ + +D A A +NG + + V
Sbjct: 166 TFAAFGNILSCKVAQDENG-NSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 219
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 14/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ + E+F
Sbjct: 211 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNVYVKNIAPDVTEDDFRELF 260
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ FG V S ++R+ E G SRG G++ + SA A+ L+G D G+++ V + +
Sbjct: 261 EKFGDVTSSSLARDQE-GKSRGFGFVNFTTHESASKAVDDLNGKDFHGQDLYVGRAQKKH 319
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NL V + LR F FG + SA+V+ +
Sbjct: 320 EREEELRKSYEAARLEKANKYQGVN-LYIKNLDDDVDDDKLRQMFSEFGPITSAKVMRE 377
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRV 173
+ + V
Sbjct: 360 TKPLYV 365
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E+G S+G G++ + +A AI +
Sbjct: 152 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-ESGASKGYGFVHYETDEAASQAIKHV 210
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R
Sbjct: 211 NGMLLNEKKVFVGHHIPKKDRQSKFEEM----KANFT-----NIYVKNIPVEATDEEFRE 261
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG V SA + D+ +R FGF++F + A+ LNG DF+G+ + V
Sbjct: 262 LFEKFGDVTSASLARDQDTGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQK 321
Query: 281 RTE 283
+ E
Sbjct: 322 KHE 324
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+P E E+F+ FG V S ++R+ +TG SRG G
Sbjct: 230 DRQSKFEE--MKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFG 287
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + A A+ L+G D G+++ V + + R + K Y+
Sbjct: 288 FVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGV 347
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL V E LR F FG + SA+V+ D
Sbjct: 348 N-LYVKNLDDDVDDEKLRELFTPFGAITSAKVMRD 381
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+V P++ A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 53 SAVPHPQASA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 109
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ + A+ L+ + + GR R+ +S + + + +++
Sbjct: 110 YNTTTDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 154
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A +NG
Sbjct: 155 KNLDTAIDNKALHDTFAAFGNILSCKVAQDESG-ASKGYGFVHYETDEAASQAIKHVNGM 213
Query: 267 DFRGRTIIV 275
+ + V
Sbjct: 214 LLNEKKVFV 222
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 238 VYIKNFGEDMDDERLKDLFGKFGPALSVKVVTD-ESGKSKGFGFVSFERHEDARKAVDEM 296
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 297 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 355
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 356 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 406
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 146 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 203
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 204 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 253
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGV 279
+ FG+FG +S +V+ D G+ ++ FGF+SF + R A +NG + G+ I V
Sbjct: 254 DLFGKFGPALSVKVVTDESGK-SKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQ 312
Query: 280 DRTE 283
+ E
Sbjct: 313 KKVE 316
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R +R
Sbjct: 277 GFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 336
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL D L + F PFGT+ S +V E G S+G G++ S A A
Sbjct: 337 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 394
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G V + + V +
Sbjct: 395 VTEMNGRIVATKPLYVALA 413
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R +R
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL D L + F PFGT+ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRV 173
+ ++G V + + V
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|226288243|gb|EEH43755.1| 28 kDa ribonucleoprotein [Paracoccidioides brasiliensis Pb18]
Length = 492
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 98/197 (49%), Gaps = 11/197 (5%)
Query: 85 DDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
D++ V +++ P E L++ NL + D L F+ FG + V + + +TG S+
Sbjct: 229 DEEEVVAPKKTKVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDTGRSK 288
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA--EALISPPKKIFVY 199
G GY+ + A A A +++ GR++ V F+ N+R+ A + S +
Sbjct: 289 GFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVDFA---NARSNAAPRDRAQSRAQNFGDQ 345
Query: 200 ESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAE 256
SP L++GN++++ + F +G+++ R+ D + + FG++ FSS D
Sbjct: 346 RSPESDTLFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEA 405
Query: 257 RDAALSLNGTDFRGRTI 273
R A SLNG++ GR +
Sbjct: 406 RSAFESLNGSELAGRAM 422
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ N+ S D + + E F +G++L V + +PE+G +G GY+ SI+ A++A +L
Sbjct: 353 LFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESL 412
Query: 162 DGSDVGGREMRVRFS 176
+GS++ GR MR+ FS
Sbjct: 413 NGSELAGRAMRLDFS 427
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 182 RTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
+ + E +++P K L++GNLSW V E LR+ F FG + R++ DR
Sbjct: 226 KAEDEEEVVAPKKTKVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDTG 285
Query: 242 TTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIV 275
++ FG++ F++ DA + A + T+ GR + V
Sbjct: 286 RSKGFGYVEFTNAEDAVK-AHAAKKDTELDGRKLNV 320
>gi|398810631|ref|ZP_10569445.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398082488|gb|EJL73237.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 179
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSVVVNE 78
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSVVVNEARPMEAR 85
>gi|319796634|ref|YP_004158274.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315599097|gb|ADU40163.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 189
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSVVVNE 78
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDGDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSVVVNEARPMEAR 85
>gi|333993552|ref|YP_004526165.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
gi|333734416|gb|AEF80365.1| RNP-1 like RNA-binding protein [Treponema azotonutricium ZAS-9]
Length = 100
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
KLYVGNLS+ + LRN F +FG V S++++ DR+ +++ FGFI S+D E AA++
Sbjct: 4 KLYVGNLSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITG 63
Query: 263 LNGTDFRGRTIIVREGVDR 281
NG +F GR + V E +D+
Sbjct: 64 TNGHEFEGRQLRVNEAMDK 82
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL L +F FG V S ++ + E+G S+G G++ M + A AI
Sbjct: 4 KLYVGNLSYQTTEDGLRNLFSQFGNVTSSKIIFDRESGSSKGFGFIEMSTDEEAAAAITG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSRTR 184
+G + GR++RV ++D R R
Sbjct: 64 TNGHEFEGRQLRVNEAMDKPRRDR 87
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G+S+G G++ + +A NAI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V+ E+ R
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + SA + D +G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 242 LFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
Query: 281 RTE 283
+ E
Sbjct: 301 KHE 303
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E ++F+ FG + S +SR+ E G SRG G
Sbjct: 210 DRQSKFEE--MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ +V +++ V + + R + K Y+
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV 326
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V + LR FG +GT+ SA+V+ D
Sbjct: 327 N-LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 22/210 (10%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
DN EV ++VE P + ++P LYV L S + L E+F G V S+ V R+
Sbjct: 20 DNAPAPEV---TAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD 76
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
T S G Y+ + A+ L+ + + G+ R+ +S + + +
Sbjct: 77 AVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQG------ 130
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SS 253
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + ++
Sbjct: 131 ---------NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVHYETA 180
Query: 254 DAERDAALSLNGTDFRGRTIIVREGVDRTE 283
+A +A +NG + + V + + +
Sbjct: 181 EAANNAIKHVNGMLLNDKKVFVGHHISKKD 210
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ ETG S+G G++ + +A AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ETGASKGYGFVHYETDEAASQAIKHV 207
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ V +D R
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNIAADVTEDDFRQ 258
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V S+ + D++G+ +R FGF++F++ ++ A LN DF G+ + V
Sbjct: 259 LFEKYGDVTSSSLARDQEGK-SRGFGFVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQK 317
Query: 281 RTE 283
+ E
Sbjct: 318 KHE 320
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 61 LYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNATPDGEKALEEL 120
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 121 NYTIIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDVAIDNKALHD 165
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G ++ +GF+ + +D A A +NG + + V
Sbjct: 166 TFAAFGNILSCKVAQDETG-ASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 219
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 14/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ + ++F
Sbjct: 211 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNVYVKNIAADVTEDDFRQLF 260
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G V S ++R+ E G SRG G++ + SA A+ L+ D G+++ V + +
Sbjct: 261 EKYGDVTSSSLARDQE-GKSRGFGFVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQKKH 319
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NL V + LR F FG++ SA+V+ +
Sbjct: 320 EREEELRKSYEAARLEKANKYQGVN-LYIKNLDDDVDDDKLREMFKDFGSITSAKVMRE 377
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 11/169 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 207 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 263
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 264 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTGMNG 310
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 113
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 114 NGMLLNDRKVSVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 163
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG + G+ I V
Sbjct: 164 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNGKELNGKQIYVGRA 221
Query: 279 VDRTE 283
+ E
Sbjct: 222 QKKVE 226
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 197 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 256
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 257 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTGMNGRIVA 314
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 315 TKPLYVALA 323
>gi|116786211|gb|ABK24023.1| unknown [Picea sitchensis]
Length = 302
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 90/185 (48%), Gaps = 6/185 (3%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+ S C++YV +P + ++ F+ GTV V+ P++G RG ++ +
Sbjct: 67 QSQESNYDECKVYVGGIPYYSNEDDIRSFFEGCGTVTEVDCMTFPDSGKFRGIALISFKT 126
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+A A +ALDG+D+GGR ++++ S + A P K + ++ Y+GNL
Sbjct: 127 KAAATRA-LALDGADMGGRFLKIQQCRTHRSSKNDKPAGFVPTK----VDKSNRAYIGNL 181
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRG 270
+W + +DL+ FG + + R+ D+ + +G I F+ + AL L+ T G
Sbjct: 182 AWDIAEDDLKVVFGDC-KISAIRLGKDKTTGEFKGYGHIDFADEVSLAMALKLDQTVVCG 240
Query: 271 RTIIV 275
R I +
Sbjct: 241 RPIKI 245
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
K+YVG + + +D+R+ F GTV + R ISF + A AL+L
Sbjct: 77 KVYVGGIPYYSNEDDIRSFFEGCGTVTEVDCMTFPDSGKFRGIALISFKTKAAATRALAL 136
Query: 264 NGTDFRGRTIIVRE 277
+G D GR + +++
Sbjct: 137 DGADMGGRFLKIQQ 150
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R +R
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL D L + F PFGT+ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRV 173
+ ++G V + + V
Sbjct: 350 VTEMNGRIVATKPLYV 365
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + ++G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTD-QSGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL A+ E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVN-LYVKNLDDAIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 78/183 (42%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG V+S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TVSAFGNVLSCKVVCDENG--SKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGN------------EVDDDSSVEEPR----SRA 97
GF V E+A DE+NGK+ G + + E+ + +R
Sbjct: 232 GFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL + D L + F PFGT+ S +V E G S+G G++ S A A
Sbjct: 292 QVVNLYVKNLDDAIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G V + + V +
Sbjct: 350 VTEMNGRIVATKPLYVALA 368
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 20/187 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPH---------KLYVGN 209
+G D+ G+++ R + ++ + ++ + K + + P LYV N
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPK-IEQVPQDRSVRCQGVNLYVKN 310
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFR 269
L + E LR F FGT+ SA+V + G ++ FGF+ FSS E A+ T+
Sbjct: 311 LDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAV----TEMN 364
Query: 270 GRTIIVR 276
GR + +
Sbjct: 365 GRIVATK 371
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G + + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIF---------VKNLDRSIDSKTLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F + E + A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFV 170
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L E F FG VLS +V+ + E G SRG G++ + AK+AI A+
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G E+ V + R E K F +YV N+ E+
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEA----KANFT-----NIYVKNIDVETTDEEFEQ 249
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F ++G +VSA + D +G+ + FGF++F +A A LNG +F+ + + V
Sbjct: 250 LFSQYGEIVSAALEKDAEGK-PKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYV 303
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 19/176 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L ++F P G + S+ V R+ T S G Y+ + K AI L
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ +++ GR R+ +S D R + + +++ NL A+ + L
Sbjct: 112 NYAEINGRPCRIMWSERDPAIRKKGS----------------GNIFIKNLHPAIDNKALH 155
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIV 275
F FG V+S +V D G +R FGF+ F +++ +DA ++NG G + V
Sbjct: 156 ETFSTFGEVLSCKVALDENG-NSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYV 210
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 90/180 (50%), Gaps = 7/180 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE ++A +YV N+ E ++F +G ++S + ++ E G +G G
Sbjct: 218 DRISKLEE--AKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE-GKPKGFG 274
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ N+A A+ L+G + + + V + R + + K+ ++
Sbjct: 275 FVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGV 334
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL ++ E L+ F +GT+ SARV+ D++G ++ FGF+ FSS E A++
Sbjct: 335 N-LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEG-NSKGFGFVCFSSPEEATKAMT 392
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGASKGYGFVHFETEEAANKSIDKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG D G+ + V
Sbjct: 211 MFEKYGTITSHKVMSKDDGK-SRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-SKDDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G D+ G+ M V + R + + K ++ Y+ + LYV NL + E
Sbjct: 253 NGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN-LYVKNLDDTIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FGT+ SA+V+ + ++ FGF+ FS E A+ T+ GR +
Sbjct: 312 LRKEFTPFGTITSAKVMMEEG--RSKGFGFVCFSQPEEATKAV----TEMNGRIV 360
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 118 TFSAFGNILSCKVAQDESG-ASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 92/177 (51%), Gaps = 6/177 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E R++A +Y+ N D L E+F +G LSV+V +P +G S+G G+++ +
Sbjct: 181 ELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDP-SGKSKGFGFVSFDN 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+A+ A+ ++G D+ G+ + V + R + + K+ + + KLY+ N
Sbjct: 240 HEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + E LR F FG++ +V+ + +GQ ++ FG I FSS E A++ +NG
Sbjct: 300 LDDTIDDEKLRKEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEEATKAMTEMNG 354
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 24/175 (13%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTV---LSVEVSRNPETGISRGCGYLTMGSI 151
++ R LYV +L S D++E L +FK F TV LS+ + R+ T S G Y+ +
Sbjct: 5 AKYRMASLYVGDL--SADVTEDL-LFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A+ A+ ++ + G+ +R+ +S R+A S +F + NL
Sbjct: 62 ADAQKALDTMNFDMIKGKSIRLMWS------QRDACLRKSGIGNVF---------IKNLD 106
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
++ + L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG
Sbjct: 107 RSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNG 159
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L E+F +G LSV+V + +G S+G G+++ + +AK A+ +
Sbjct: 163 VYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDS-SGKSKGFGFVSFDNHEAAKKAVKEM 221
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPEDLR 220
+G D+ G+ + V + R + + KK ++ KLY+ NL + E LR
Sbjct: 222 NGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIKNLDDTIDDEKLR 281
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F FG++ +V+ + G ++ FG I FSS E A++ +NG
Sbjct: 282 KEFSSFGSISRVKVMQE--GGQSKGFGLICFSSLEEATKAMTEMNG 325
>gi|396471523|ref|XP_003838892.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
gi|312215461|emb|CBX95413.1| hypothetical protein LEMA_P025650.1 [Leptosphaeria maculans JN3]
Length = 490
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 17/196 (8%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+VEEP L+V NL + D L F+ FG ++ + + ETG +G GY+
Sbjct: 223 TVEEPAGAEGIKNLFVGNLSWNIDEDWLRREFEGFGEIVGCRIITDRETGRGKGFGYVEF 282
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSI--------DMNSRTRNAEALISPPKKIFVYE 200
+ A A + ++ GR + V FS N R S P
Sbjct: 283 ATSADAAKAQAEMHQYELDGRPLNVDFSTPRQKPDAGKTNDRANKYGDKRSAPS------ 336
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ L++GNLS+ + ++ F +G + + DR + + FG++ F S E AA
Sbjct: 337 --NTLFLGNLSFDCTNDSIQEIFAEYGNITRVSLPTDRDTGSIKGFGYVDFGSQEEATAA 394
Query: 261 L-SLNGTDFRGRTIIV 275
L +LNG D GR I +
Sbjct: 395 LDALNGQDIAGRNIRI 410
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 181 SRTRNAEALISPP-KKIFVYESP------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSAR 233
S+ R AE P KK E P L+VGNLSW + + LR F FG +V R
Sbjct: 205 SKKRKAEEAAEPAIKKTKTVEEPAGAEGIKNLFVGNLSWNIDEDWLRREFEGFGEIVGCR 264
Query: 234 VLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIV 275
++ DR+ + FG++ F++ A+ A ++ + GR + V
Sbjct: 265 IITDRETGRGKGFGYVEFATSADAAKAQAEMHQYELDGRPLNV 307
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ NL SFD + + E+F +G + V + + +TG +G GY+ GS A A+
Sbjct: 339 LFLGNL--SFDCTNDSIQEIFAEYGNITRVSLPTDRDTGSIKGFGYVDFGSQEEATAALD 396
Query: 160 ALDGSDVGGREMRVRFS 176
AL+G D+ GR +R+ ++
Sbjct: 397 ALNGQDIAGRNIRIDYA 413
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G+S+G G++ + +A NAI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V+ E+ R
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + SA + D +G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 242 LFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
Query: 281 RTE 283
+ E
Sbjct: 301 KHE 303
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E ++F+ FG + S +SR+ E G SRG G
Sbjct: 210 DRQSKFEE--MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ +V +++ V + + R + K Y+
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV 326
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V + LR FG +GT+ SA+V+ D
Sbjct: 327 N-LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 22/210 (10%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
DN EV ++VE P + ++P LYV L S + L E+F G V S+ V R+
Sbjct: 20 DNAPAPEV---TAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD 76
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
T S G Y+ + A+ L+ + + G+ R+ +S + + +
Sbjct: 77 AVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQG------ 130
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SS 253
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + ++
Sbjct: 131 ---------NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVHYETA 180
Query: 254 DAERDAALSLNGTDFRGRTIIVREGVDRTE 283
+A +A +NG + + V + + +
Sbjct: 181 EAANNAIKHVNGMLLNDKKVFVGHHISKKD 210
>gi|406864898|gb|EKD17941.1| RNA recognition domain-containing protein-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 810
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 20/208 (9%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P ++A+ L+V +LP +L E+F + V +PET S+G G++T+
Sbjct: 40 PNAQAKRT-LFVRSLPAIATSDKLTELFSQDYPLKHATVVLDPETKQSKGYGFVTLADAE 98
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES----------- 201
A+ A+ +G GR+M++ + + + + L K E+
Sbjct: 99 DAQRALEEFNGKTFMGRKMKIEIAQPRSREMADGKGLEGKRKSTISAEAARIKKERLEQM 158
Query: 202 -----PHKLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
P KL + NL W+V PE L F +FG V + VL +KG T FGFI+
Sbjct: 159 AEEKKPPKLIIRNLPWSVNTPEKLAEIFKKFGKVKFS-VLPKKKGDTQAGFGFITMRGKK 217
Query: 256 ERDAAL-SLNGTDFRGRTIIVREGVDRT 282
D AL ++NGT GR + V V+++
Sbjct: 218 NADKALAAINGTLVDGRILAVDWAVEKS 245
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
K+ V ++ L++ NL + V+ +L+ HF +FG V ARV+ DR R GF+ F
Sbjct: 346 KVLVTDNSTTLFIRNLPFTVRDAELKEHFEQFGPVRYARVVMDRATDRPRGTGFVCF 402
>gi|400602999|gb|EJP70597.1| cutinase negative acting protein [Beauveria bassiana ARSEF 2860]
Length = 448
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
D + ++ +S P L+ +L D + L E FK FG ++S V + TG SRG GY+
Sbjct: 190 DEAPKKAKSDDAPMTLFAGSLSWGVDDNALYEAFKSFGNIVSARVVTDKNTGRSRGFGYV 249
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK---IFVYESPH 203
G SA A A+ G ++ GR + + ++ + + + K+ ES
Sbjct: 250 DFGDSESATKAYEAMQGQEIDGRALNLDYANAKPTEGKPQDRAADRAKRHGDTLSAES-D 308
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
L+VGNL + + + +R F V S R+ D + FG+++F+S + +AL
Sbjct: 309 TLFVGNLPFDTEQDTVRQFFSEVAEVASVRLPTDPDSGNLKGFGYVTFNSIEDAKSAL 366
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 181 SRTRNAEALIS-PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
S+ R AE I PKK ++P L+ G+LSW V L F FG +VSARV+ D+
Sbjct: 180 SKKRKAEDEIDEAPKKAKSDDAPMTLFAGSLSWGVDDNALYEAFKSFGNIVSARVVTDKN 239
Query: 240 GQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+R FG++ F S++ A ++ G + GR +
Sbjct: 240 TGRSRGFGYVDFGDSESATKAYEAMQGQEIDGRAL 274
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP + + + F V SV + +P++G +G GY+T SI AK+A+ A
Sbjct: 310 LFVGNLPFDTEQDTVRQFFSEVAEVASVRLPTDPDSGNLKGFGYVTFNSIEDAKSALDAK 369
Query: 162 DGSDVG-GREMRV 173
+G+ +G GR R
Sbjct: 370 NGASIGNGRNSRA 382
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + +L+E+F+P+GT+L+V V R+ T S G GY+ + NSA A+ +
Sbjct: 23 LYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSATKAMEEM 82
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V +L
Sbjct: 83 NFKRVGEKCIRIMW------QQRDP---------ALRYSGNGNVFVKNLKGEVDSRELSL 127
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
F +FG ++S +V+ D G +R +GF+ F D A + A S+NG
Sbjct: 128 IFKKFGEILSCKVMDDESG-NSRGYGFVHFKDDNAAKSAIESMNGV 172
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 7/176 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ + + D + + + F FG + S + ++ R + + A AI
Sbjct: 205 VYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKN---GRAFAFCNFEKHDDAVKAIEEF 261
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLR 220
+V G ++ R +E LI+ +K +S + LYV N +DL
Sbjct: 262 HDHEVEGVTQPGEKLYVQRAQPR-SERLIALRQKYMQCQSLGNNLYVRNFDPEFTEKDLN 320
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +G + S RV+ D G +R FGF+SF + + +AAL ++G G+ ++V
Sbjct: 321 ELFKEYGVIRSCRVMTDANG-VSRGFGFVSFENADQANAALREMSGRMLNGKPLVV 375
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L E+F +G LSV V + +TG S+G G+++
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTD-DTGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ GR++ V + R + K ++ Y+ + LYV NL
Sbjct: 244 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGR 356
Query: 272 TIIVR 276
+ +
Sbjct: 357 IVATK 361
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL D L + F PFGT+ S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G V + + V +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368
>gi|357485175|ref|XP_003612875.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355514210|gb|AES95833.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 324
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V NLP S ++ ++F GTV+ VE+ ++ + G +G ++TM S A+ A+
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +++ GR +RV F+ + + PP E+ + +Y NL+W + LR+
Sbjct: 157 NATEISGRILRVEFA-------KGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRD 209
Query: 222 HFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F F T VSARV+ G + +GF+S+ ++ E +AA+S L G + GR ++V+
Sbjct: 210 IFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVK 266
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL S S L +F +GT+LS +V+ E G S+G G++ S +SA A AL
Sbjct: 107 LFVKNLDFSISSSCLESIFSKYGTILSCKVA--GENGRSKGFGFVQFESQDSALVAQTAL 164
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +GG+++ V + RT A P ++F LYV NL + + L++
Sbjct: 165 HDTMLGGKKLHVCKFVKKTERTAAA------PCEVFT-----NLYVKNLDETITEDGLKD 213
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F G V S ++ D +G++ FGF++F S D + A +NG+ +T+ V +
Sbjct: 214 MFSVVGDVSSVAIMMDHEGKSKH-FGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQR 272
Query: 281 RTE 283
++E
Sbjct: 273 KSE 275
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 94 RSRARPCE----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
R+ A PCE LYV NL + L +MF G V SV + + E G S+ G++
Sbjct: 185 RTAAAPCEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHE-GKSKHFGFVNFK 243
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL---- 205
S + AK A+ ++GS +G + + V + + RT ++ K S KL
Sbjct: 244 SPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERT----MILKQEYKDLHNRSTEKLRASN 299
Query: 206 -YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
YV NL+ + + L+ F +G ++S +V+ G T++ FGF+ F+S E + AL +L
Sbjct: 300 LYVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDG-TSKQFGFVCFASPEEANKALVAL 358
Query: 264 NG 265
NG
Sbjct: 359 NG 360
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 92/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + ++G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTD-QSGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL A+ E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDAIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG V+S +V+ D G ++ +GF+ F + +A A +NG + V
Sbjct: 118 TVSAFGNVLSCKVVCDENG--SKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R +R
Sbjct: 232 GFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL + D L + F PFGT+ S +V E G S+G G++ S A A
Sbjct: 292 QVVNLYVKNLDDAIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G V + V +
Sbjct: 350 VTEMNGRIVATEPLYVALA 368
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 18/184 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NLP S + L +MFK FG ++S +V+ E G SRG G++ ++A AI L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V +E+ V + R + E + LY+ NL V + LR
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTN-------------LYMKNLDADVSEDLLRE 219
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIVREGV 279
F FG +VS + D + + R + F++F + DA R AA ++NGT F + + V
Sbjct: 220 KFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR-AAETVNGTKFGSKCLYVGRAQ 277
Query: 280 DRTE 283
+ E
Sbjct: 278 KKAE 281
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 16/190 (8%)
Query: 96 RARPCE----LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
R +P E LY+ NL D+SE L E F FG ++S+ ++++ E + RG ++
Sbjct: 193 RVKPEEKYTNLYMKNL--DADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFD 249
Query: 150 SINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+ A+ A ++G+ G + + R + + R +K+ S +Y
Sbjct: 250 NPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVS--NIY 307
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSLNG 265
V N++ AV E+LR HF + GT+ S +++ D KG+ ++ FGF+ FS+ E DA + +G
Sbjct: 308 VKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVKTFHG 366
Query: 266 TDFRGRTIIV 275
F G+ + V
Sbjct: 367 QMFHGKPLYV 376
>gi|395005503|ref|ZP_10389380.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
gi|394316556|gb|EJE53277.1| RRM domain-containing RNA-binding protein, partial [Acidovorax sp.
CF316]
Length = 110
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL FG+FG V SA+V+ +R ++ FGF+ SD E AA++
Sbjct: 3 NKLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQPLGGRSIVVNE 78
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S S+L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDPEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSIVVNEARPMEPR 85
>gi|398810917|ref|ZP_10569726.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
gi|398081873|gb|EJL72641.1| RRM domain-containing RNA-binding protein [Variovorax sp. CF313]
Length = 134
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
KLYVGNL+++V+ DL FG FG +VSA+V+ +R ++ FGF+ SDAE AA+ +
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGAIVSAKVMMERDTGRSKGFGFVEMGSDAEALAAIEA 63
Query: 263 LNGTDFRGRTIIVRE 277
+NG +GR + V E
Sbjct: 64 MNGHSLQGRALTVNE 78
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S ++L + F FG ++S +V +TG S+G G++ MGS A AI A
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGAIVSAKVMMERDTGRSKGFGFVEMGSDAEALAAIEA 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G + GR + V + M +R
Sbjct: 64 MNGHSLQGRALTVNEARPMEAR 85
>gi|319791037|ref|YP_004152677.1| rnp-1 like RNA-binding protein [Variovorax paradoxus EPS]
gi|315593500|gb|ADU34566.1| RNP-1 like RNA-binding protein [Variovorax paradoxus EPS]
Length = 138
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
KLYVGNL+++V+ DL FG FG +VSA+V+ +R ++ FGF+ SDAE AA+ +
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGAIVSAKVMMERDTGRSKGFGFVEMGSDAEALAAIEA 63
Query: 263 LNGTDFRGRTIIVRE 277
+NG +GR + V E
Sbjct: 64 MNGHSLQGRALTVNE 78
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S ++L + F FG ++S +V +TG S+G G++ MGS A AI A
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGAIVSAKVMMERDTGRSKGFGFVEMGSDAEALAAIEA 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G + GR + V + M +R
Sbjct: 64 MNGHSLQGRALTVNEARPMEAR 85
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 96/184 (52%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL RS D + + F FG +LS +V+++ ETG S+G G++ + SA +I +
Sbjct: 92 VFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ETGNSKGYGFVHFETKQSATQSIEKV 150
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V + N R E + K++ +Y+ N+ V ++L
Sbjct: 151 NGMLLNGKKVFVGRFVGRNDR----EKELGQRAKLYT-----NVYIKNIDENVNEKELFE 201
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G ++R FGF++F E + A++ L+G G+T V
Sbjct: 202 MFKKYGTITSCKVMFKDDG-SSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQ 260
Query: 280 DRTE 283
+TE
Sbjct: 261 KKTE 264
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 12/205 (5%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRAR-PCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+NGK G V + +E RA+ +Y+ N+ + + EL EMFK +GT+ S +V
Sbjct: 155 LNGKKVFVGRFVGRNDREKELGQRAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKV 214
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV-GGREMRVRFSIDMNSRTRNAEALI 190
+ G SRG G++ A+ A+ L G G+ V + R + +
Sbjct: 215 MFK-DDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKF 273
Query: 191 SPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
K +I Y+ + LYV NL + E LR F FGT+ SA+V+ D ++ FGF
Sbjct: 274 EQYKIERINRYQGVN-LYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDDG--RSKGFGF 330
Query: 249 ISFSSDAERDAALSLNGTDFRGRTI 273
+ FSS E A+ TD GR +
Sbjct: 331 VYFSSPEEATKAV----TDMNGRIV 351
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 17/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F G +LS+ V R+ T S G Y+ +I A+ A+
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALD 61
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G MR+ +S R+ S +F + NL ++ + +
Sbjct: 62 TMNFDILKGHPMRIMWS------QRDPSLRKSGVGNVF---------IKNLDRSIDNKAM 106
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
+ F FG ++S +V D G ++ +GF+ F + ++ +NG G+ + V
Sbjct: 107 YDTFSAFGNILSCKVAQDETG-NSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRF 165
Query: 279 VDRTE 283
V R +
Sbjct: 166 VGRND 170
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 98/194 (50%), Gaps = 8/194 (4%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ + +L ++F P+G + S+ + ++ E G S+G G
Sbjct: 220 DRESKFEE--IKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 277 FVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL + E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 337 N-LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGK-SKGFGFVCFSSPEEATKAIT 394
Query: 263 -LNGTDFRGRTIIV 275
+N F G+ + V
Sbjct: 395 EMNQRMFFGKPLYV 408
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + + AI L
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 114 NYSPIEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 158
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ + +++A A ++NG R + V + +
Sbjct: 159 TFSTFGKILSCKVATDDMGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHIS 217
Query: 281 RTE 283
+ +
Sbjct: 218 KKD 220
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + L++ NL + D +L E FKPFGT+ S V + ETG S+G G++ S
Sbjct: 328 EKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSP 386
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ G+ + V + + R E I
Sbjct: 387 EEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQQIQ 426
>gi|221069836|ref|ZP_03545941.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
gi|220714859|gb|EED70227.1| RNP-1 like RNA-binding protein [Comamonas testosteroni KF-1]
Length = 158
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ DL FG+FG V SARV+ +R ++ FGF+ +S+AE AA+
Sbjct: 3 NKLYVGNLPYGVRDNDLEQAFGQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQ 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSLVVNE 78
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP ++L + F FG V S V +TG S+G G++ M S A+ AI
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFGQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSLVVNEARPMEPR 85
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L +F FG LSV V + E G SRG G++ + A+ A+ +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ GR + R + ++ + I ++I Y+ + LYV NL ++ E
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQ-ERIQRYQGVN-LYVKNLDDSIDDEK 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ SA+V+ D G +R FGF+ FSS E A+ T+ GR +
Sbjct: 310 LRKEFAPYGTITSAKVMTD--GGHSRGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ N+ S D L + F FG +LS +V + E G S+G G++ + +A AI +
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAANRAIETM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + F +Y+ N + E L+N
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-KEREAEMGAKAVEFT-----NVYIKNFGEDIDSEKLKN 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F FG +S V+ D +G++ R FGF++F + + R A +NG + GR + V
Sbjct: 210 IFTEFGKTLSVCVMTDERGRS-RGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RLE 271
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + N+ ++ + L +
Sbjct: 73 NYEVIKGRPIRIMWS------QRDPGLRKSGVGNIF---------IKNMDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A ++NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R + LYV NL S D +L + F P+GT+ S +V + G SRG G++ S
Sbjct: 285 QERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVM--TDGGHSRGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|332531199|ref|ZP_08407112.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
gi|332039306|gb|EGI75719.1| RNP-1 like RNA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 131
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL+++++ DL FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLAYSIRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
LNG GR ++V E
Sbjct: 63 GLNGQPLSGRNVVVNE 78
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S ++L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLAYSIRDNDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
L+G + GR + V + M R
Sbjct: 64 LNGQPLSGRNVVVNEARPMEPR 85
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+ RA +++ NL + D L + F FG +LS +V+ N E G S G G++ S ++
Sbjct: 162 QRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKVASN-EHG-SLGYGFVHYESNDA 219
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A+ AI ++G + +++ V I R +A I + + +YV NL A
Sbjct: 220 AEAAIKHVNGMLLNDKKVYVGHHISKKDR----QAKIEEARAHYT-----NVYVKNLDPA 270
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRT 272
V E+ F ++G + SA + D++G+ +R FGF++FS + A+ LN T+F G+
Sbjct: 271 VTQEEFEKLFEKYGKITSAAIATDQEGK-SRGFGFVNFSEHEQAAKAVEELNDTEFHGQK 329
Query: 273 IIVREGVDRTE 283
+ + ++E
Sbjct: 330 LFLGRAQKKSE 340
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D + +EE +RA +YV NL + E ++F+ +G + S ++ + E G SRG G
Sbjct: 247 DRQAKIEE--ARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQE-GKSRGFG 303
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNA-EALISPPKKIFVYE 200
++ A A+ L+ ++ G+++ R + + R A EA + +K+ Y+
Sbjct: 304 FVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKN--EKLSKYQ 361
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ LY+ NL E L+ F FGT SA+V+ G +R FGF+ +S+ E + A
Sbjct: 362 GVN-LYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTPTG-ASRGFGFVCYSAPEEANKA 419
Query: 261 LS-LNGTDFRGRTIIV 275
++ +NG R + V
Sbjct: 420 VAEMNGKMIENRPLYV 435
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + + L E+F G V S+ V R+ T S G Y+ + ++ A+ L
Sbjct: 82 LYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALEQL 141
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + R + +++ NL A+ + L +
Sbjct: 142 NYTPIRGRPCRIMWSQRDPGQRRAGQG---------------NIFIKNLDEAIDNKALHD 186
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V + G +GF+ + S+ +AA+ +NG + + V +
Sbjct: 187 TFAAFGKILSCKVASNEHGSLG--YGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHIS 244
Query: 281 RTE 283
+ +
Sbjct: 245 KKD 247
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|30179878|sp|O01671.3|SXL_MEGSC RecName: Full=Sex-lethal homolog
gi|9743624|emb|CAC01696.1| sex-lethal homologue [Megaselia scalaris]
Length = 321
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 40/240 (16%)
Query: 23 TPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN 82
+P+ F+S P+ I Q+ + S + +++ G SV + + + G +N G N
Sbjct: 24 SPQDTDFSSYPSTIGRQHSQQSQRYYQNNNCGLGSVGNMANSTNSLNS----GTNNSGTN 79
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
L V LP+ EL +F+ G + + + R+ +TG S G
Sbjct: 80 -------------------LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYG 120
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G++ GS A AI L+G V + ++V F+ + R+
Sbjct: 121 YGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTN--------------- 165
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LYV NLS ++ E L FG++G +V +L D+ T R FI F+ E A+S
Sbjct: 166 --LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 223
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R LYV NL RS +L +F +G ++ + R+ TG RG ++ A+ A
Sbjct: 162 RDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEA 221
Query: 158 IIALD 162
I AL+
Sbjct: 222 ISALN 226
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|453088735|gb|EMF16775.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 761
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 10/200 (5%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
++ ++ + C L+V +LP S +L E+F V +PET + +G G++T
Sbjct: 43 QQKQATQKRCSLFVRSLPASTTNDQLTELFSDAFPVKHATAVIDPETKLCKGYGFVTFAD 102
Query: 151 INSAKNAIIALDGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPH--- 203
A A +G ++GG+++R+ S D ++ E++ +K E H
Sbjct: 103 AEDAAQAKAQFNGHELGGKKLRIEVAEPRSRDSKAKDEGKESVGQLKRKEAEVERQHQPS 162
Query: 204 KLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
KL V NL W++K P+ L F +G + A V G FGF+ + A+
Sbjct: 163 KLIVRNLPWSIKGPKQLEKLFQSYGKIKKAYVPQKGPGLMA-GFGFVIMRGRKNAEKAIE 221
Query: 263 -LNGTDFRGRTIIVREGVDR 281
+NG + GRT+ V V++
Sbjct: 222 GVNGKEINGRTLAVDWAVEK 241
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 98 RPCELYVCNLPRSFDISELLE-MFKPFGTVLSVEV-SRNPETGISRGCGYLTMGSINSAK 155
+P +L V NLP S + LE +F+ +G + V + P G+ G G++ M +A+
Sbjct: 160 QPSKLIVRNLPWSIKGPKQLEKLFQSYGKIKKAYVPQKGP--GLMAGFGFVIMRGRKNAE 217
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
AI ++G ++ GR + V ++++ + NA+A
Sbjct: 218 KAIEGVNGKEINGRTLAVDWAVEKDVFEENADA 250
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHF-GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
+ P L++ NL + EDL +HF FG+ ARV+ D ++ GF+ F A+ D
Sbjct: 327 DKPTTLFIRNLPFTCTDEDLEDHFREHFGSTRYARVVMDHGTGRSKGTGFVCFYDKADAD 386
Query: 259 AAL 261
L
Sbjct: 387 GCL 389
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|168053751|ref|XP_001779298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669310|gb|EDQ55900.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 9/177 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++ V +P +++ E F+ GT+ ++ P+TG +G ++T + +AK A +A
Sbjct: 1 KVMVGGMPYYITENDIHEFFQECGTIAELDCMTFPDTGKFKGIAFITFRTEEAAKRA-MA 59
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL--YVGNLSWAVKPED 218
LD +D+GGR +++ N PPKK P L Y+GNLS+ + ++
Sbjct: 60 LDAADMGGRFLKIEMCKIKPLEVGNKPLFKEPPKK-----QPGCLAAYIGNLSYDITEKE 114
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
+R F + + S R +++ R FG I F+ D +AA+ L+ GR + +
Sbjct: 115 VRRFF-KGCKIESVRFAENKETGEFRGFGHIDFADDESLEAAMKLDQEPLLGRPLKI 170
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 11/185 (5%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L E+F +G LS+ V + ++G S+G G+++
Sbjct: 172 ARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-DSGKSKGFGFVSFERHED 230
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ GR++ V + R + K ++ Y+ + LYV NL
Sbjct: 231 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN-LYVKNLD 289
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR
Sbjct: 290 DGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGR 343
Query: 272 TIIVR 276
+ +
Sbjct: 344 IVATK 348
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 88 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEKM 145
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + + F +Y+ N + E L+
Sbjct: 146 NGMLLNDRKVFVGRF----KSR-KEREAELGARAREFT-----NVYIKNFGEDMDDEKLK 195
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIV 275
F ++G +S RV+ D G+ ++ FGF+SF DA++ A +NG + GR + V
Sbjct: 196 ELFSKYGPALSIRVMTDDSGK-SKGFGFVSFERHEDAQK-AVDDMNGKELNGRQVYV 250
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 115 ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174
E + F P G +LS+ V R+ T S G Y+ A+ A+ ++ + GR +R+
Sbjct: 13 EAQQDFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIM 72
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S R+ S IF + NL ++ + L + F FG ++S +V
Sbjct: 73 WS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYDTFSAFGNILSCKV 117
Query: 235 LHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 VCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 157
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL D L + F PFGT+ S +V E G S+G G++ S A
Sbjct: 276 TRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 333
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G V + + V +
Sbjct: 334 TKAVTEMNGRIVATKPLYVALA 355
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 95/189 (50%), Gaps = 14/189 (7%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL +S D L + F FG ++S +V+ + +G S+G G++ + SA+
Sbjct: 124 RSGAGNIFIKNLDKSIDHKALHDTFSVFGNIISCKVAVD-SSGQSKGYGFVQYETEESAQ 182
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A+ L+G + +++ V + R K IF +YV NL+ +
Sbjct: 183 KAMGQLNGMLLNDKQVYVGPFLRRQERDSTGN------KTIFT-----NVYVKNLAESTT 231
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTII 274
+DL+N FG FG + SA V+ D +G+ + FGF++F ++D A SLNG F +
Sbjct: 232 DDDLKNIFGEFGKITSAVVMKDGEGK-PKGFGFVNFENADDAAKAVESLNGKTFDDKEWF 290
Query: 275 VREGVDRTE 283
V ++E
Sbjct: 291 VGRAQKKSE 299
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F FG + S V ++ E G +G G++ + + A A+ +L
Sbjct: 221 VYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGE-GKPKGFGFVNFENADDAAKAVESL 279
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + +M + + ++L K ++S + LYV NL +V
Sbjct: 280 NGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADK---FQSSN-LYVKNLDDSVSD 335
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
E L+ F +GTV S +V+ D G +R GF++FS+ E A+S
Sbjct: 336 EKLKELFTPYGTVTSCKVMRDPNG-MSRGSGFVAFSTPEEATKAMS 380
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
+V + S++E + + LYV NL S +L E+F P+GTV S +V R+P G+SRG
Sbjct: 305 KVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDP-NGMSRG 363
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
G++ + A A+ + G + + + V + R +A S
Sbjct: 364 SGFVAFSTPEEATKAMSEMSGKMIENKPLYVAVAQRKEDRRARLQAQFS 412
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALS 262
LYVG+L V L + F + G VVS RV D + + +G+++F+S DA R A
Sbjct: 42 LYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAAR-AIQE 100
Query: 263 LNGTDFRGRTIIV 275
LN G+ + V
Sbjct: 101 LNYIPLNGKPVRV 113
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG++LS +V N E G SRG G++ + +A+ AI +
Sbjct: 164 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYN-EHG-SRGFGFVHFETHEAAQKAINTM 221
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + F +YV NL + + L++
Sbjct: 222 NGMLLNDRKV---FVGHFKSRQKR-EAELGARALGFT-----NVYVKNLHMDMDEQGLQD 272
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + S +V+ D GQ +R FGF++F E A+ +NG + RG+ + V
Sbjct: 273 LFSQFGKMQSVKVMRDSNGQ-SRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQK 331
Query: 281 RTE 283
R E
Sbjct: 332 RAE 334
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L EMF P GT+LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 76 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 135
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 136 NFEMIKGQPIRIMWS------HRDPGLRKSGMGNIF---------IKNLENSIDNKALYD 180
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
F FG+++S++V+++ G +R FGF+ F + +A + A ++NG R + V
Sbjct: 181 TFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFV 233
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E ++R + LYV NL S + L E+F +G + S +V E+ S+G G++ S
Sbjct: 348 QERQNRYQGVNLYVKNLDDSINDERLKEVFSAYGVITSAKVM--TESSHSKGFGFVCFSS 405
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 406 PEEATKAVTEMNGRIVGTKPLYVALA 431
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 96/177 (54%), Gaps = 9/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ N F + L ++F+ +G+++S V ++ E G+S+G G+++ S +A A+ A+
Sbjct: 197 VFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGE-GLSKGFGFVSFESHEAASAAVQAV 255
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
S V GR++ + N R+R + ++ Y+ + LY+ NL + E L
Sbjct: 256 HNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVN-LYIKNLEDTLGEEKL 314
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
++ F +FG++ SA+++ D G ++ FGF+ FSS E A+ T+ GR ++ +
Sbjct: 315 KSEFSKFGSITSAKIMTDEFGH-SKGFGFVCFSSPEEATKAV----TEMNGRIVVSK 366
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 17 LYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALDTM 76
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ R+ +S S R+ +++ NL ++ + L +
Sbjct: 77 NYEPIKGQPCRIMWSQRDPSLRRSGVG---------------NIFIKNLDKSIDHKALYD 121
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D + ++ FGF+ F D A+ +NG + V + +
Sbjct: 122 TFSAFGNILSCKVATD-GNRHSKGFGFVHFDEQEAADLAIEKVNGKLLNDMKVYVGKFIP 180
Query: 281 RTE 283
R +
Sbjct: 181 RKD 183
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + S+L E F P G+V S+ V R+ T S G GY+ S + + A+ L
Sbjct: 54 LYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEEL 113
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +++ G R+ +S S R+ I ++ NL A++ + L +
Sbjct: 114 NYAEIKGVRCRLMWSQRDPSLRRSGSGNI---------------FIKNLDPAIENKTLHD 158
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F FG V+S +V D G ++ FGF+ + SD AA+ ++NG GR I V
Sbjct: 159 TFSSFGKVLSCKVATDENG-NSKGFGFVHYESDEAAQAAIENINGMLLNGREIYV 212
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 18/186 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + + L + F FG VLS +V+ + E G S+G G++ S +A+ AI +
Sbjct: 142 IFIKNLDPAIENKTLHDTFSSFGKVLSCKVATD-ENGNSKGFGFVHYESDEAAQAAIENI 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GRE+ V + R + +I +F V N ++LR
Sbjct: 201 NGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVF---------VKNFDTESTEDELRE 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL----SLNGTDFRGRTIIVRE 277
F +G + S + D +G + FGF++F AE D A+ +LN +++G+ + V
Sbjct: 252 LFESYGPITSIHLQVDSEGH-NKGFGFVNF---AEHDDAVKAVEALNDKEYKGKPLYVGR 307
Query: 278 GVDRTE 283
+ E
Sbjct: 308 AQKKNE 313
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E + + L++ NL S D + L E FKPFGT+ S +V + E G SRG G++ + +
Sbjct: 328 EKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLD-ENGKSRGFGFVCLSTP 386
Query: 152 NSAKNAIIALDGSDVGGREMRVRFS 176
A AI ++ V + + V +
Sbjct: 387 EEATKAISEMNQRMVANKPLYVALA 411
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG VLS +V+ + E G S+G G++ + +A NAI ++
Sbjct: 132 VFIKNLDEAIDNKALHDTFVAFGNVLSCKVATD-EHGRSKGYGFVHYETAEAADNAIKSV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R + + K F LY+ NL V E+
Sbjct: 191 NGMLLNDKKVYVGHHISRKERQSKLDEM----KAQFT-----NLYIKNLDTEVTQEEFTE 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F R+G V S+ V D +G+ ++ FGF+++ E A+ L+ TD +G+ + V
Sbjct: 242 LFTRYGNVTSSLVATDEEGK-SKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARAQK 300
Query: 281 RTE 283
+ E
Sbjct: 301 KAE 303
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 11/172 (6%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A+ LY+ NL E E+F +G V S V+ + E G S+G G++ A+
Sbjct: 219 KAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATD-EEGKSKGFGFVNYERHEEAQ 277
Query: 156 NAIIALDGSDVGGREM---RVRFSIDMNSRTRNA--EALISPPKKIFVYESPHKLYVGNL 210
A+ L +D+ G+++ R + + R + +A + +K+ Y+ + LY+ NL
Sbjct: 278 RAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKL---EKLSKYQGVN-LYIKNL 333
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ LR F FG + S +V+ D KG T++ FGF+ FSS E A++
Sbjct: 334 EDDFDDDKLRAEFEPFGAITSCKVMRDEKG-TSKGFGFVCFSSPDEATKAVA 384
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 17/190 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S A LYV L + + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 37 STAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 96
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ S + R R+ +S + + + +++ NL A+
Sbjct: 97 ERALEQLNYSLIKNRACRIMWSQRDPALRKTGQG---------------NVFIKNLDEAI 141
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG V+S +V D G+ ++ +GF+ + +++A +A S+NG + +
Sbjct: 142 DNKALHDTFVAFGNVLSCKVATDEHGR-SKGYGFVHYETAEAADNAIKSVNGMLLNDKKV 200
Query: 274 IVREGVDRTE 283
V + R E
Sbjct: 201 YVGHHISRKE 210
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ + LY+ NL FD +L F+PFG + S +V R+ E G S+G G++ S + A
Sbjct: 321 SKYQGVNLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRD-EKGTSKGFGFVCFSSPDEA 379
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++ +G + + V + R + E+ I+
Sbjct: 380 TKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIA 416
>gi|320580860|gb|EFW95082.1| poly(A+) RNA-binding protein, putative [Ogataea parapolymorpha
DL-1]
Length = 405
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 95/188 (50%), Gaps = 11/188 (5%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+RA ++V NLP +L ++F+ G V+ +V + G SRG G + + +
Sbjct: 64 NRAYENSIFVGNLPYHTTWYDLKDLFREVGEVVRADVVTS--RGRSRGMGTVEFANKDLV 121
Query: 155 KNAIIALDGSDVGGREMRVRFSI---DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ AI D + GRE+ VR + + + R +PP YE +++GNL
Sbjct: 122 QEAISKFDRTMYEGREIFVREDLPPPEKENTGREERRRNAPPPSTEGYE----VFIGNLP 177
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRG 270
++V+ +DL++ F G ++ A V D +G+ ++ FG + F + + D A++ NG D G
Sbjct: 178 FSVRWQDLKDLFKSCGPIIRADVREDHRGR-SKGFGTVIFENSEDADRAIADFNGYDMDG 236
Query: 271 RTIIVREG 278
R I VR G
Sbjct: 237 RRIEVRLG 244
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 15/163 (9%)
Query: 86 DDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
+++ EE R A P E+++ NLP S +L ++FK G ++ +V R G S
Sbjct: 150 ENTGREERRRNAPPPSTEGYEVFIGNLPFSVRWQDLKDLFKSCGPIIRADV-REDHRGRS 208
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN------SRTRNAEALISPPK 194
+G G + + A AI +G D+ GR + VR N + +RN+E +
Sbjct: 209 KGFGTVIFENSEDADRAIADFNGYDMDGRRIEVRLGKQFNKEPQGPTESRNSEFVAG--- 265
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ E ++ NL W DL + FG +V A + D
Sbjct: 266 VVGQGEPNDTIFADNLPWETSETDLFDLFGSIASVKRAELQFD 308
>gi|303318024|ref|XP_003069014.1| splicing factor, CC1-like family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240108695|gb|EER26869.1| splicing factor, CC1-like family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320036831|gb|EFW18769.1| RNA splicing factor [Coccidioides posadasii str. Silveira]
Length = 593
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 7/182 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL+ F+ G V ++ ++ +G S+G GY+ + S AI L
Sbjct: 206 VFVQQLAARLRTKELIAFFEKAGPVKDAQIVKDRVSGRSKGVGYVEFKNEESVPLAI-QL 264
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + +F+ + N RN E +S + + H+LYVGN+ +++ DL+
Sbjct: 265 TGQKLLGIPIIAQFTEAEKNKAARNTEGHVSGNQNSIPF---HRLYVGNIHFSITESDLQ 321
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ D G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 322 NVFEPFGELDFVQLQKDENGR-SRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVGLGN 380
Query: 280 DR 281
D+
Sbjct: 381 DK 382
>gi|392569148|gb|EIW62322.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 556
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 20/195 (10%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
D ++VEE +++ ++V L + D L + F G V+S V + TG SRG GY
Sbjct: 287 DAAAVEEEGTKS----IFVGRLSWNVDNDWLAQEFAECGEVISARVQMDRNTGKSRGFGY 342
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN---SRTRNAEAL---ISPPKKIFVY 199
+ + + + A++ L+G ++ GR + + S + +R + AE S P +
Sbjct: 343 VEFATTEAVEAALL-LNGKEIDGRPVNIDKSEQKDKGAAREKRAEKFGDSASEPSAV--- 398
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERD 258
L+VGNLSW + + FG G V S R+ DR+ + FG++ F+ + +
Sbjct: 399 -----LFVGNLSWDCTEDQVWEVFGEHGDVKSVRLPTDRETGRPKGFGYVEFTDIETAKK 453
Query: 259 AALSLNGTDFRGRTI 273
A L+GT+ GR I
Sbjct: 454 AFEGLSGTEVAGRPI 468
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E ++VG LSW V + L F G V+SARV DR +R FG++ F++ +A
Sbjct: 294 EGTKSIFVGRLSWNVDNDWLAQEFAECGEVISARVQMDRNTGKSRGFGYVEFATTEAVEA 353
Query: 260 ALSLNGTDFRGRTIIVREGVDRTES 284
AL LNG + GR + +D++E
Sbjct: 354 ALLLNGKEIDGRPV----NIDKSEQ 374
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 64/127 (50%), Gaps = 17/127 (13%)
Query: 65 EAVVVEDEINGKD------NVGGNEVDDDSSVEEPR------SRARPCE-LYVCNLPRSF 111
EAV +NGK+ N+ +E D + E R S + P L+V NL S+
Sbjct: 349 EAVEAALLLNGKEIDGRPVNIDKSEQKDKGAAREKRAEKFGDSASEPSAVLFVGNL--SW 406
Query: 112 DISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR 169
D +E + E+F G V SV + + ETG +G GY+ I +AK A L G++V GR
Sbjct: 407 DCTEDQVWEVFGEHGDVKSVRLPTDRETGRPKGFGYVEFTDIETAKKAFEGLSGTEVAGR 466
Query: 170 EMRVRFS 176
+R+ +S
Sbjct: 467 PIRLDYS 473
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 99/194 (51%), Gaps = 8/194 (4%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ F E ++F PFGT+ S+ + ++ + G S+G G
Sbjct: 95 DRESKFEE--MKANYTNIYVKNIDLEFSDEEFEKLFVPFGTITSIYLEKD-QDGKSKGFG 151
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA A+ L+ ++ G+++ V + R + + ++ Y+
Sbjct: 152 FVNYETHESAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYESTRVERLSKYQGV 211
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L F FG++ SA+V+ D G+ ++ FGF+ FSS E A++
Sbjct: 212 N-LFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGK-SKGFGFVCFSSPEEATKAIT 269
Query: 263 -LNGTDFRGRTIIV 275
+N G+ + V
Sbjct: 270 EMNQRMILGKPLYV 283
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + + G S+ G++ + +A+ AI +
Sbjct: 17 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAAIENV 75
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V I R E + + + +YV N+ E+
Sbjct: 76 NGMLLNDREVYVGKHISKKDRESKFEEMKA---------NYTNIYVKNIDLEFSDEEFEK 126
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
F FGT+ S + D+ G+ ++ FGF+++ + ++ A LN + G+ I V
Sbjct: 127 LFVPFGTITSIYLEKDQDGK-SKGFGFVNYETHESAVKAVEELNDKEINGQKIYV 180
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ + L+V NL S D +L E FKPFG++ S +V + E G S+G G++ S A
Sbjct: 206 SKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVD-EAGKSKGFGFVCFSSPEEA 264
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
AI ++ + G+ + V + + R E I
Sbjct: 265 TKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQIQ 301
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG VLS +V+ + E G S+G G++ + +A NAI ++
Sbjct: 132 VFIKNLDEAIDNKALHDTFVAFGNVLSCKVATD-EHGRSKGYGFVHYETAEAADNAIKSV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R + + K F LY+ NL V E+
Sbjct: 191 NGMLLNDKKVYVGHHISRKERQSKLDEM----KAQFT-----NLYIKNLDTEVTQEEFTE 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F R+G V S+ V D +G+ ++ FGF+++ E A+ L+ TD +G+ + V
Sbjct: 242 LFTRYGNVTSSLVATDEEGK-SKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARAQK 300
Query: 281 RTE 283
+ E
Sbjct: 301 KAE 303
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 11/172 (6%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A+ LY+ NL E E+F +G V S V+ + E G S+G G++ A+
Sbjct: 219 KAQFTNLYIKNLDTEVTQEEFTELFTRYGNVTSSLVATD-EEGKSKGFGFVNYERHEEAQ 277
Query: 156 NAIIALDGSDVGGREM---RVRFSIDMNSRTRNA--EALISPPKKIFVYESPHKLYVGNL 210
A+ L +D+ G+++ R + + R + +A + +K+ Y+ LY+ NL
Sbjct: 278 RAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQAKL---EKLSKYQG-INLYIKNL 333
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ LR F FG + S +V+ D KG T++ FGF+ FSS E A++
Sbjct: 334 EDDFDDDKLRAEFEPFGAITSCKVMRDEKG-TSKGFGFVCFSSPDEATKAVA 384
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 17/190 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S A LYV L + + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 37 STAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 96
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ S + R R+ +S + + + +++ NL A+
Sbjct: 97 ERALEQLNYSLIKNRACRIMWSQRDPALRKTGQG---------------NVFIKNLDEAI 141
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG V+S +V D G+ ++ +GF+ + +++A +A S+NG + +
Sbjct: 142 DNKALHDTFVAFGNVLSCKVATDEHGR-SKGYGFVHYETAEAADNAIKSVNGMLLNDKKV 200
Query: 274 IVREGVDRTE 283
V + R E
Sbjct: 201 YVGHHISRKE 210
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ + LY+ NL FD +L F+PFG + S +V R+ E G S+G G++ S + A
Sbjct: 321 SKYQGINLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRD-EKGTSKGFGFVCFSSPDEA 379
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++ +G + + V + R + E+ I+
Sbjct: 380 TKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIA 416
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 206 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 264
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 265 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 321
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 322 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 371
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 298 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 355
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 356 PEEATKAVTEMNGRIVGSKPLYVALA 381
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 79/196 (40%), Gaps = 31/196 (15%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS----------- 150
LYV +L + L E F P G VLS+ V R+ T S G Y+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTSTSS 72
Query: 151 --INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ + A+ ++ + G+ +R+ +S S ++ +++
Sbjct: 73 SPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIK 117
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD 267
NL ++ + L + F FG ++S +V+ D G ++ + F+ F + D A+ +NG
Sbjct: 118 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 175
Query: 268 FRGRTIIVREGVDRTE 283
R + V R E
Sbjct: 176 LNDRKVFVGRFKSRKE 191
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L +F FG LSV V + E G SRG G++ + A+ A+ +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ GR + R + ++ + I ++I Y+ + LYV NL ++ E
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQ-ERIQRYQGVN-LYVKNLDDSIDDEK 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ SA+V+ D G +R FGF+ FSS E A+ T+ GR +
Sbjct: 310 LRKEFAPYGTITSAKVMTD--GGHSRGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ N+ S D L + F FG +LS +V + E G S+G G++ + +A AI +
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAANRAIETM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + F +Y+ N + E L+N
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-KEREAEMGAKAVEFT-----NVYIKNFGEDIDSEKLKN 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F FG +S V+ D +G++ R FGF++F + + R A +NG + GR + V
Sbjct: 210 IFTEFGKTLSVCVMTDERGRS-RGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RLE 271
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + N+ ++ + L +
Sbjct: 73 NYEVIKGRPIRIMWS------QRDPGLRKSGVGNIF---------IKNMDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A ++NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R + LYV NL S D +L + F P+GT+ S +V + G SRG G++ S
Sbjct: 285 QERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVM--TDGGHSRGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 11/187 (5%)
Query: 95 SRARPCELYVCNLPRSFDIS--ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
SR + +YV N+P FD++ EL ++F +GT+ S ++R+ + G S+G G++
Sbjct: 204 SRVQFTNIYVKNIP--FDVTDEELSQLFGKYGTITSCVITRD-DDGTSKGFGFVNFEKHQ 260
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNL 210
A+NA+ L D G+++ V + N R K K+ Y+ + LYV NL
Sbjct: 261 DAQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVN-LYVKNL 319
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDF 268
+ + LR+ F +G + SA+++ D K +R FGF+ F+S DA R A +NG
Sbjct: 320 DDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATR-AVTEMNGRII 378
Query: 269 RGRTIIV 275
+ I V
Sbjct: 379 GSKPIYV 385
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 19/184 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L EMF G V S+ V R+ T S G Y+ + A+ A+ L
Sbjct: 30 LYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAERALETL 89
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ S + GR R+ +S D + R N +++ NL ++ + L
Sbjct: 90 NYSMIKGRSCRIMWSQRDPSLRKGNN----------------GNIFIKNLDPSIDHKALH 133
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
+ F FG ++S ++ HD +G ++ +GF+ + + +A A S+NG R + V +
Sbjct: 134 DTFSAFGNILSCKIAHDEQG-NSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHI 192
Query: 280 DRTE 283
R E
Sbjct: 193 SRKE 196
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LYV NL D L + F +G + S ++ R+ +T ISRG G++ S
Sbjct: 304 EKMSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSP 363
Query: 152 NSAKNAIIALDGSDVGGREM-----------RVRFSIDMNSRTRNAEALISP 192
A A+ ++G +G + + R + I M R + +A++ P
Sbjct: 364 EDATRAVTEMNGRIIGSKPIYVAIAQRKEVRRSQLEIQMAQRNQLKQAMMPP 415
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D L E+F FG LSV+V + E G SRG G++ A+ A+ ++
Sbjct: 178 IYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVD-ENGHSRGFGFVNFEKHEEAQKAVNSM 236
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +GGR + V + R R E + +++ Y+ + LYV NL + E
Sbjct: 237 NGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQ--ERVNRYQGVN-LYVKNLDDVIDDE 293
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 294 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 343
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D +L + F P+G + S +V E G S+G G++ S
Sbjct: 270 QERVNRYQGVNLYVKNLDDVIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSS 327
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G V + + V + R
Sbjct: 328 PEEATKAVTEMNGRIVSTKPLYVALAQRKEER 359
>gi|432877083|ref|XP_004073098.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Oryzias
latipes]
Length = 347
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 4/196 (2%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+E +RA+ +++V L +L + F +G V + E+ TG RG G++
Sbjct: 86 QADESEARAKVKKIFVGGLKNDIQEDDLTDYFSQYGEVENSEIISEKTTGKKRGFGFVHF 145
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ + A + +A+ V G + V+ ++ PK ++ KL+VG
Sbjct: 146 -TDDYAADMAVAVPFHIVNGHRVEVKKAVPKQEMQIKPNTSYDLPK---MFNQACKLFVG 201
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDF 268
L + LR HF +FGT++ V+ + Q +R FGF+++ + E +AA++ +
Sbjct: 202 GLKVDTNDDGLRKHFEQFGTLIDCAVVPHKTAQRSRCFGFVTYLTPEEANAAMAASPHTV 261
Query: 269 RGRTIIVREGVDRTES 284
G + V+ V + ++
Sbjct: 262 EGNWVEVKRAVPKKQA 277
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 87/187 (46%), Gaps = 14/187 (7%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ C+L+V L + L + F+ FGT++ V + SR G++T + A NA
Sbjct: 4 QACKLFVGGLKVDTNDDGLRKHFEQFGTLIDCAVVPHKTAQRSRCFGFVTYLTPEEA-NA 62
Query: 158 IIALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+A V G + V+ ++ + A A + K++VG L ++
Sbjct: 63 AMAASPHTVEGNWVEVKRAVPKKQADESEARAKVK------------KIFVGGLKNDIQE 110
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+DL ++F ++G V ++ ++ ++ R FGF+ F+ D D A+++ G + V+
Sbjct: 111 DDLTDYFSQYGEVENSEIISEKTTGKKRGFGFVHFTDDYAADMAVAVPFHIVNGHRVEVK 170
Query: 277 EGVDRTE 283
+ V + E
Sbjct: 171 KAVPKQE 177
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL+VG L + LR HF +FGT++ V+ + Q +R FGF+++ + E +AA++
Sbjct: 7 KLFVGGLKVDTNDDGLRKHFEQFGTLIDCAVVPHKTAQRSRCFGFVTYLTPEEANAAMAA 66
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G + V+ V + ++
Sbjct: 67 SPHTVEGNWVEVKRAVPKKQA 87
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 215 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 273
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 274 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 330
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 331 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 380
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 94
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 95 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 139
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 140 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 197
Query: 281 RTE 283
R E
Sbjct: 198 RKE 200
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 254 GFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRY 313
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 314 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 371
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 372 VTEMNGRIVGSKPLYVALA 390
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + E+ R
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDQEISEEEFRQ 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
F +FG + SA + D++G+ +R FGF+++S+ D+ + A +N + +G+ + V
Sbjct: 248 MFEKFGEITSATLSRDQEGK-SRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYV 301
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 216 DRQSKFEE--MKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFG 272
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ +V G+++ V + + R + K Y+
Sbjct: 273 FVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 332
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR F +GT+ SA+V+ D
Sbjct: 333 N-LYVKNLTDDIDDEKLREMFAPYGTITSAKVMRD 366
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 43 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 102
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 103 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDAAI 147
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 206
Query: 274 IVREGVDRTE 283
V + + +
Sbjct: 207 FVGHHISKKD 216
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
E S+ + LYV NL D +L EMF P+GT+ S +V R+ T I R
Sbjct: 324 EKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRD--TNIER 371
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSGVGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R +R
Sbjct: 232 GFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL D L + F PFGT+ S +V E G S+G G++ S A A
Sbjct: 292 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G V + + V +
Sbjct: 350 VTEMNGRIVATKPLYVALA 368
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 168 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 226
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 227 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 283
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 284 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 333
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 76 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 133
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E L+
Sbjct: 134 NGMLLNDRKVFVGRF----KSR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDESLK 183
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G+ ++ FGF+S+ + + A+ +NG + G+ I V
Sbjct: 184 ELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 242
Query: 280 DRTE 283
+ E
Sbjct: 243 KKVE 246
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 73/169 (43%), Gaps = 18/169 (10%)
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L E F P G VLS+ V R+ T S G Y+ A+ A+ ++ + G+ +R+ +
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
S S ++ +++ NL ++ + L + F FG ++S +V+
Sbjct: 62 SQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 106
Query: 236 HDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTE 283
D G ++ + F+ F + D A+ +NG R + V R E
Sbjct: 107 CDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 153
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 260 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 317
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 318 PEEATKAVTEMNGRIVGSKPLYVALA 343
>gi|119186105|ref|XP_001243659.1| hypothetical protein CIMG_03100 [Coccidioides immitis RS]
gi|392870366|gb|EAS32162.2| CC1-like family splicing factor [Coccidioides immitis RS]
Length = 595
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 7/182 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL+ F+ G V ++ ++ +G S+G GY+ + S AI L
Sbjct: 208 VFVQQLAARLRTKELIAFFEKAGPVKDAQIVKDRVSGRSKGVGYVEFKNEESVPLAI-QL 266
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + +F+ + N RN E +S + + H+LYVGN+ +++ DL+
Sbjct: 267 TGQKLLGIPIIAQFTEAEKNKAARNTEGHVSGNQNSIPF---HRLYVGNIHFSITESDLQ 323
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ D G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 324 NVFEPFGELDFVQLQKDENGR-SRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVGLGN 382
Query: 280 DR 281
D+
Sbjct: 383 DK 384
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|159472653|ref|XP_001694459.1| glycine-rich RNA-binding protein [Chlamydomonas reinhardtii]
gi|158276683|gb|EDP02454.1| glycine-rich RNA-binding protein [Chlamydomonas reinhardtii]
Length = 165
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KLYVGNLSW + +DL N F +FG V A V DR+ +R FGF++ ++A + A
Sbjct: 4 KLYVGNLSWDTRADDLTNLFSKFGAVEDAFVATDRETGRSRGFGFVTLEANAAKSACSEC 63
Query: 264 NGTDFRGRTIIVRE 277
+GT+F GRTI V E
Sbjct: 64 DGTEFMGRTIRVNE 77
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL +L +F FG V V+ + ETG SRG G++T+ N+AK+A
Sbjct: 4 KLYVGNLSWDTRADDLTNLFSKFGAVEDAFVATDRETGRSRGFGFVTL-EANAAKSACSE 62
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
DG++ GR +RV + + R
Sbjct: 63 CDGTEFMGRTIRVNEATPLGER 84
>gi|145231104|ref|XP_001389816.1| RNA-binding protein rsd1 [Aspergillus niger CBS 513.88]
gi|134055944|emb|CAK37421.1| unnamed protein product [Aspergillus niger]
gi|350638781|gb|EHA27137.1| hypothetical protein ASPNIDRAFT_46267 [Aspergillus niger ATCC 1015]
Length = 570
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 20/202 (9%)
Query: 93 PRSRAR---PCE-------LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
PRSR R P E ++V L EL+ F+ G V ++ ++ +G S+G
Sbjct: 163 PRSRERTPEPTEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKG 222
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYES 201
GY+ S +S AI L G + G + + + + N + RN EA + +
Sbjct: 223 VGYVEFKSEDSVAPAI-QLTGQKLLGIPIIAQLTEAEKNRQARNPEASSGN-----NHAA 276
Query: 202 P-HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDA 259
P H+LYVGN+ +++ DL+N F FG + ++ D G+ +R +GF+ F + R+A
Sbjct: 277 PFHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQKDETGR-SRGYGFVQFRDPNQAREA 335
Query: 260 ALSLNGTDFRGRTIIVREGVDR 281
+NG D GR I V G D+
Sbjct: 336 LEKMNGFDLAGRAIRVGLGNDK 357
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+ S S+L +F+PFG + V++ ++ ETG SRG G++ N A+ A+ +
Sbjct: 281 LYVGNIHFSITESDLQNVFEPFGELEFVQLQKD-ETGRSRGYGFVQFRDPNQAREALEKM 339
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G D+ GR +RV D + NA+ + S
Sbjct: 340 NGFDLAGRAIRVGLGNDKFTPDSNAQRMQS 369
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 84 VDDDSSVEEPRS---RARPCEL-----------------YVCNLPRSFDISELLEMFKPF 123
VD + ++EE + RPC + ++ NL + D L + F F
Sbjct: 113 VDGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAF 172
Query: 124 GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
G +LS +V+++ E+G S+G G++ + +A AI ++G + +++ V I R
Sbjct: 173 GNILSCKVAQD-ESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQ 231
Query: 184 RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
E + K F +YV N+ E+ R F +FG V SA + D + +
Sbjct: 232 SKFEEM----KANFT-----NIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKS 282
Query: 244 RVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTE 283
R FGF++F + A+ LNG DF+G+ + V + E
Sbjct: 283 RGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHE 323
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+P E E+F
Sbjct: 213 LLNEKKVFVGHHIPKKDR--------QSKFEE--MKANFTNIYVKNIPVEATEEEFRELF 262
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ FG V S ++R+ E+G SRG G++ + A A+ L+G D G+++ V + +
Sbjct: 263 EKFGDVTSASLARDTESGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKH 322
Query: 181 SRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
R R+ EA +K Y+ + LYV NL + E LR F FG + SA+V+
Sbjct: 323 EREEELRRSYEAARM--EKASKYQGVN-LYVKNLDDEIDDEKLRELFAPFGAITSAKVMR 379
Query: 237 DRKGQTT 243
D +T
Sbjct: 380 DTPAETA 386
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 82 NEVDDDSSVEEPRSRARP---CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
N D D++ P + P LYV L S + L E+F G+V S+ V R+ T
Sbjct: 40 NSEDQDAAGPTPTNAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITR 99
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
S G Y+ + + A+ L+ + + GR R+ +S + +N +
Sbjct: 100 RSLGYAYVNYNTTVDGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQG---------- 149
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AER 257
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A
Sbjct: 150 -----NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESG-ASKGYGFVHYETDEAAA 203
Query: 258 DAALSLNGTDFRGRTIIV 275
A +NG + + V
Sbjct: 204 QAIKHVNGMLLNEKKVFV 221
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 9/180 (5%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ +YV NL S E EM FG + S V + E G S+G G++ + A+
Sbjct: 221 RAKFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDE-GKSKGFGFVNFENHEDAQ 279
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ AL+ ++ G+ + V + R K K+ Y+ + LY+ NL
Sbjct: 280 KAVDALNETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVN-LYIKNLDDD 338
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
+ E LR F +G + SA+V+ D K T++ FGF+ FSS E A+ T+ GR I
Sbjct: 339 IDDEKLRQEFSVYGVITSAKVMCDEK-DTSKGFGFVCFSSPDEATKAV----TEMNGRMI 393
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +++ + E+G S+G G++ + +A NAI +
Sbjct: 134 VFIKNLDPSIDNKALHDTFSAFGNILSCKIALD-ESGNSKGYGFVHYETEEAADNAIKHV 192
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R +A I + F +YV NL +VK E+
Sbjct: 193 NGMLLNDKKVYVGRHVPKKER----QAKIEQFRAKFT-----NVYVKNLDESVKDEEFNE 243
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
+FG + SA V D +G+ ++ FGF++F + + A+ +LN T+ +G+ + V
Sbjct: 244 MLAKFGPITSALVQTDDEGK-SKGFGFVNFENHEDAQKAVDALNETEHKGKILYVARAQK 302
Query: 281 RTE 283
+TE
Sbjct: 303 KTE 305
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L EMF G V S+ V R+ T S G Y+ +I + A+ +L
Sbjct: 46 LYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALESL 105
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S S + +++ NL ++ + L +
Sbjct: 106 NYTLIKGKPCRIMWSQRDPSLRKTGSG---------------NVFIKNLDPSIDNKALHD 150
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S ++ D G ++ +GF+ + ++ D A+ +NG + + V V
Sbjct: 151 TFSAFGNILSCKIALDESG-NSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHVP 209
Query: 281 RTE 283
+ E
Sbjct: 210 KKE 212
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 1/175 (0%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+P L+V NL + D + L E FK GTV S V + E+G S+G GY+ + A+ A
Sbjct: 237 KPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKA 296
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
G+ + GRE++V FS + + +A + V L+VGNL + +
Sbjct: 297 HGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADED 356
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271
+ F V S R+ +++ + FG+++F+S + +A LNG GR
Sbjct: 357 SVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGR 411
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP D + F V S+ + E+G +G GY+T S+ AK+A L
Sbjct: 344 LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQL 403
Query: 162 DGSDVGGREMRVRFSI 177
+G + GR R+ +S
Sbjct: 404 NGQSINGRNCRLDYST 419
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|326531612|dbj|BAJ97810.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 740
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 6/185 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV +P ++ F+ G++ +++ P+TG RG LT + +AK A +A
Sbjct: 275 KVYVGGIPYYSSEDDIRSFFEGCGSITALDCMTFPDTGKFRGIAILTFKTDAAAKRA-LA 333
Query: 161 LDGSDVGGREMRVR-FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
LDG+D+GG ++V+ + + N E PK I Y ++ YVGNL+W V +DL
Sbjct: 334 LDGADMGGFLLKVQPYKANREKVKSNHEKEDFAPKMIEGY---NRTYVGNLAWDVTEDDL 390
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279
R F + S R D++ + F + FS AL L+ +GR +R V
Sbjct: 391 RKFFSDC-KISSIRFGKDKETGEFKGFAHVDFSDSTSLAIALKLDQNVIKGRPARIRCAV 449
Query: 280 DRTES 284
+ E+
Sbjct: 450 PKKEN 454
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRV 173
A A+ ++G VG + + V
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYV 365
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +V+ + +G S+G G++ +A+ AI
Sbjct: 128 ANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATD-ASGESKGYGFVQYERDEAAQAAID 186
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V I R E SP + F + +YV NLS +DL
Sbjct: 187 KLNGMLMNDKKVYVGPFI------RKQERDNSPGQVKF-----NNVYVKNLSENTTEDDL 235
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+ FG+FGT+ SA V+ + G+ ++ FGF++F S D A LNG F + V
Sbjct: 236 KEIFGKFGTITSAVVMREGDGR-SKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGRA 294
Query: 279 VDRTE 283
++E
Sbjct: 295 QKKSE 299
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G V+SV V R+ T S G Y+ S A A+ L
Sbjct: 42 LYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEML 101
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ +R+ +S S ++ A +++ NL ++ + L +
Sbjct: 102 NFTPINGKPIRIMYSNRDPSLRKSGTA---------------NIFIKNLDKSIDNKALYD 146
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G+ ++ +GF+ + D AA+ LNG + + V +
Sbjct: 147 TFCVFGNILSCKVATDASGE-SKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIR 205
Query: 281 RTE 283
+ E
Sbjct: 206 KQE 208
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L E+F FGT+ S V R + G S+ G++ S + A A+ L
Sbjct: 221 VYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGD-GRSKCFGFVNFESPDDAAQAVQEL 279
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + +M + + + L K Y++ + LY+ NL +V
Sbjct: 280 NGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADK---YQNTN-LYLKNLDDSVDD 335
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ LR F +GT+ S +V+ D G +R GF++F S + AL+
Sbjct: 336 DKLRELFAEYGTITSCKVMRDSNG-VSRGSGFVAFKSAEDASRALA 380
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LY+ NL S D +L E+F +GT+ S +V R+ G+SRG G++
Sbjct: 309 EKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRD-SNGVSRGSGFV 367
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++ VG + + V + R +A S
Sbjct: 368 AFKSAEDASRALAEMNSKMVGSKPLYVALAQRKEDRKARLQAQFS 412
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ + +G S+G G++ S +A+ AI L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSDEAAQKAIEKL 175
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V R E ++ K F ++V NLS + E+LR
Sbjct: 176 NGMLLNDKQVYV------GPFVRKQERDMAVDKTRFT-----NVFVKNLSESTLEEELRK 224
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTIIVREGV 279
FG FGT+ S V+ D G+ +R FGF++F + DA R A +LNG + V
Sbjct: 225 IFGEFGTITSVAVMKDEDGK-SRCFGFVNFENAEDAAR-AVEALNGYKLDNKDWFVGRAQ 282
Query: 280 DRTE 283
++E
Sbjct: 283 KKSE 286
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ R ++V NL S EL ++F FGT+ SV V ++ E G SR G++ + A
Sbjct: 202 KTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKD-EDGKSRCFGFVNFENAEDAA 260
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAV 214
A+ AL+G + ++ V + + R + + V +S LY+ NL ++
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSI 320
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ L+ F +GT+ S +V+ D G ++ GF++FS+ E ALS +NG
Sbjct: 321 SDDKLKELFSPYGTITSCKVMRDPSG-VSKGSGFVAFSTPEEASRALSEMNG 371
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S +E +++ LY+ NL S +L E+F P+GT+ S +V R+P +G+S+G G++
Sbjct: 296 EQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDP-SGVSKGSGFV 354
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ ++G V + + V + R +A S + I + S
Sbjct: 355 AFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASS 409
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L V L + F + G VVS RV D Q + +G++++ + + AL L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 264 NGTDFRGRTI 273
N T G+ I
Sbjct: 89 NFTPLHGKPI 98
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 184 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 242
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 243 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 299
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 300 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 349
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 109 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 166
Query: 281 RTE 283
R E
Sbjct: 167 RKE 169
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 18/136 (13%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 223 GFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRY 282
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 283 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 340
Query: 158 IIALDGSDVGGREMRV 173
+ ++G VG + + V
Sbjct: 341 VTEMNGRIVGSKPLYV 356
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L +F FG LSV+V + E+G S+G G++ A+ A+ +
Sbjct: 262 VYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTD-ESGTSKGFGFVNFERHEDAQKAVEEM 320
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V + R R E L +I Y+ + LYV NL + E
Sbjct: 321 NGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQ--DRITRYQGVN-LYVKNLDDGIDDE 377
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 378 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 430
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 21/189 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + ++A+ AI +
Sbjct: 170 IFIKNLDKSIDNKALFDTFSAFGNILSCKVVCD-EHG-SKGYGFVHFETRDAAERAIDKM 227
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + L+
Sbjct: 228 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDLRLK 277
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIV--- 275
FG+FG +S +V+ D G T++ FGF++F DA++ A +NG + G+ I V
Sbjct: 278 RLFGKFGPALSVKVMTDESG-TSKGFGFVNFERHEDAQK-AVEEMNGKELNGKKIYVGRA 335
Query: 276 -REGVDRTE 283
++G +TE
Sbjct: 336 QKKGERQTE 344
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A +E+NGK+ VG + + E R +R + LYV NL
Sbjct: 311 EDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNL 370
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 371 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 428
Query: 168 GREMRVRFS 176
+ + + +
Sbjct: 429 TKPLYIALA 437
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 16/190 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL S D L + F FG ++S +V+ + +G S+G G++ + SA+
Sbjct: 120 RSGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQ 178
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI L+G + +++ V + R A K F +YV NL+ +
Sbjct: 179 KAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN------KTKFT-----NVYVKNLAESTT 227
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTI 273
+DL+N FG +G + SA V+ D G+ ++ FGF++F + DA R A SLNG F +
Sbjct: 228 DDDLKNAFGEYGKITSAVVMKDGDGK-SKGFGFVNFENADDAAR-AVESLNGHKFDDKEW 285
Query: 274 IVREGVDRTE 283
V ++E
Sbjct: 286 YVGRAQKKSE 295
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L F +G + S V ++ + G S+G G++ + + A A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGD-GKSKGFGFVNFENADDAARAVESL 275
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + + R R + L K LYV NL ++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF----QSSNLYVKNLDPSISD 331
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
E L+ F FGTV S +V+ D G T++ GF++FS+ E A+S L+G + + V
Sbjct: 332 EKLKEIFSPFGTVTSCKVMRDPNG-TSKGSGFVAFSTPEEATEAMSQLSGKMIESKPLYV 390
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F PFGTV S +V R+P G S+G G++
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDP-NGTSKGSGFV 363
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
+ A A+ L G + + + V
Sbjct: 364 AFSTPEEATEAMSQLSGKMIESKPLYV 390
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSVE+ + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVELMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+ FG ++S V+ D G ++ +GF+ F + +A A +NG GR + V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRKE 178
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 350 VTEMNGRIVGSKPLYVALA 368
>gi|406965367|gb|EKD91001.1| Glycine-rich RNA-binding protein [uncultured bacterium]
Length = 87
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
KL+VG+L W V LR F ++G ++ A VL DR+ +R FGF+ F++DA+ D A+
Sbjct: 6 KKLFVGSLPWGVDDSGLREAFSKYGEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQ 65
Query: 263 -LNGTDFRGRTIIVRE 277
+NG D GR I+V E
Sbjct: 66 EMNGADMDGRNIVVNE 81
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V +LP D S L E F +G ++ V ++ +TG SRG G++ + AI
Sbjct: 7 KLFVGSLPWGVDDSGLREAFSKYGEIIQATVLKDRQTGRSRGFGFVEFANDADGDKAIQE 66
Query: 161 LDGSDVGGREMRV 173
++G+D+ GR + V
Sbjct: 67 MNGADMDGRNIVV 79
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 3/168 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ +YV NL D E ++F+P+GT+ S ++ + + G S+G G++ + A+
Sbjct: 290 RAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDAD-GKSKGFGFVNYETHEMAQ 348
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAV 214
A+ AL+ D+ G+++ V + N R K + LY+ N+ +
Sbjct: 349 KAVDALNEKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDM 408
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
E LR F +GT+ S++++ D KG ++ FGF+ FS+ E A++
Sbjct: 409 DDEKLRAEFEPYGTITSSKIMRDDKG-VSKGFGFVCFSTPDEATRAIA 455
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG VLS +V+ + E G S+G G++ + +A AI A+
Sbjct: 203 IFIKNLDEGIDNKALHDTFVAFGNVLSCKVAVD-EQGNSKGYGFVHYETAEAADAAIKAV 261
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +++ V I R + + + F +YV NL + ++ R
Sbjct: 262 DGMLLNDKKVYVGRHIPRKERQSKLDEI----RAQFT-----NIYVKNLDTEIDEDEFRK 312
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +GT+ SA + D G+ ++ FGF+++ + + + A +LN D G+ + V
Sbjct: 313 LFEPYGTITSAVLNLDADGK-SKGFGFVNYETHEMAQKAVDALNEKDINGKKLFVGRAQK 371
Query: 281 RTE 283
R E
Sbjct: 372 RNE 374
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 70 EDEINGKDNVGG-----NEVDD------DSSVEEPRSRARPCELYVCNLPRSFDISELLE 118
E +INGK G NE D+ D++ E ++ + LY+ N+ D +L
Sbjct: 356 EKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEKLRA 415
Query: 119 MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
F+P+GT+ S ++ R+ + G+S+G G++ + + A AI ++ +G + + V +
Sbjct: 416 EFEPYGTITSSKIMRD-DKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSLAQR 474
Query: 179 MNSRTRNAEALISPPKKIFVYES 201
+ R + E+ IS +I + ++
Sbjct: 475 RDVRRQQLESQISQRNQIRMQQA 497
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + + A+ L
Sbjct: 112 LYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGERALEQL 171
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ V + + S +++ NL + + L +
Sbjct: 172 NYSLIKGKPWHV------------SRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHD 219
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F FG V+S +V D +G ++ +GF+ + +
Sbjct: 220 TFVAFGNVLSCKVAVDEQG-NSKGYGFVHYET 250
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V N S D +L EMF G + S V E+G S+G G++ + +A+ A+ L
Sbjct: 194 VFVKNFGDSLDEEKLKEMFGKHGEITSCVVM--AESGKSKGFGFVAFEAPEAAEAAVNEL 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ GR++ V + RT ++ K +I Y+ + LY+ NL + E L
Sbjct: 252 NGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVN-LYIKNLEDGLDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R+ F +GT+ SA+V+ D KG ++ FGF+ FSS E A+ T+ GR ++ +
Sbjct: 311 RSEFSTYGTITSAKVMKDEKG-ISKGFGFVCFSSPDEATKAV----TEMNGRILVTK 362
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +++ + + +SRG G++ + +A AI +
Sbjct: 101 IFIKNLDKNIDNKGLYDAFSAFGNILSCKIAVDSKN-VSRGYGFVHYETKEAAHEAIAKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ F + S+ E L KK ++V N ++ E L+
Sbjct: 160 NGMMLNDKKV---FVGEFMSKRERLEKLGDQAKKF------KNVFVKNFGDSLDEEKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
FG+ G + S V+ + ++ FGF++F + +AA++ LNG + GR ++V
Sbjct: 211 MFGKHGEITSCVVMAE--SGKSKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVVCRAQK 268
Query: 281 RTE 283
+ E
Sbjct: 269 KAE 271
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ AI +
Sbjct: 13 LYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAERAIDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR R+ +S + R+ +++ NL + + L +
Sbjct: 73 NYDPIKGRPCRIMWSQRDPTLRRSGVG---------------NIFIKNLDKNIDNKGLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S ++ D K +R +GF+ + + +A +A +NG + + V E +
Sbjct: 118 AFSAFGNILSCKIAVDSKN-VSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEFMS 176
Query: 281 RTE 283
+ E
Sbjct: 177 KRE 179
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LY+ NL D L F +GT+ S +V ++ E GIS+G G++ S + A
Sbjct: 289 NRYQGVNLYIKNLEDGLDDERLRSEFSTYGTITSAKVMKD-EKGISKGFGFVCFSSPDEA 347
Query: 155 KNAIIALDG 163
A+ ++G
Sbjct: 348 TKAVTEMNG 356
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L E+F +G +S+ V + E G SRG G+++ A+ A+ +
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G ++ G+ M V R + +T + LYV NL + E LR
Sbjct: 252 NGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGQPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 9/165 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D + ++ +P+G +LS V ++ E G SRG G++ + A A+ +L
Sbjct: 221 VFIKNLDVSVDDEKFKQILEPYGEILSAVVQKD-EQGNSRGFGFVNYKNHEEAAKAVESL 279
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+ +V G+++ + N R RN E + +K+ Y + LYV NL E
Sbjct: 280 NEVEVDGKKIFAARAQKKNEREEELRRNYEQ--AKLEKLAKYAGVN-LYVKNLDDDFDDE 336
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L F FGT+ SA+++ D KG T++ FGF+ FSS E A+S
Sbjct: 337 RLVGEFEPFGTITSAKIMRDEKG-TSKGFGFVCFSSPDEATKAVS 380
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG VLS +V+ + E G SRG G++ + SA AI +
Sbjct: 128 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATD-ENGNSRGYGFVHYENGESASAAIQHV 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R +A I K F +++ NL +V E +
Sbjct: 187 NGMLLNDKKVYVGHHVSKKER----QAKIDEQKSQFT-----NVFIKNLDVSVDDEKFKQ 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
+G ++SA V D +G +R FGF+++ + E A+ SLN + G+ I
Sbjct: 238 ILEPYGEILSAVVQKDEQG-NSRGFGFVNYKNHEEAAKAVESLNEVEVDGKKIFAARAQK 296
Query: 281 RTE 283
+ E
Sbjct: 297 KNE 299
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ ++ + A+ L
Sbjct: 40 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALEQL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL A+ + L +
Sbjct: 100 NYSLIKNRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEAIDNKALHD 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG V+S +V D G +R +GF+ + + AA+ +NG + + V V
Sbjct: 145 TFAAFGNVLSCKVATDENG-NSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVS 203
Query: 281 RTE 283
+ E
Sbjct: 204 KKE 206
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL FD L+ F+PFGT+ S ++ R+ E G S+G G++ S + A A+ L
Sbjct: 324 LYVKNLDDDFDDERLVGEFEPFGTITSAKIMRD-EKGTSKGFGFVCFSSPDEATKAVSEL 382
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
G +G + + V + + R + E+ I+
Sbjct: 383 SGKMIGSKPLYVSLAQRRDVRRQQLESQIA 412
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A ++V NL + EL E+F +G + S + ++ E G S+G G
Sbjct: 219 DRESKFEE--MKANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLE-GKSKGFG 275
Query: 145 YLTMGSINSAKNAIIALDGSDVGG------REMRVRFSIDMNSRTRNAEALISPPKKIFV 198
++ + N A A+ L+ ++ G R + R ++ R A L +K+
Sbjct: 276 FVNFDNHNDAVKAVDELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKL----EKLSK 331
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
Y+ + L++ NL + E L N F FG + SARV+ D +G+ ++ FGF+ FSS E
Sbjct: 332 YQGVN-LFIKNLDDTIDSEKLENEFKPFGNITSARVMVDEQGK-SKGFGFVCFSSPEEAT 389
Query: 259 AALS-LNGTDFRGRTIIV 275
A++ +N G+ + V
Sbjct: 390 KAITEMNQRMVEGKPLYV 407
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ + + AI L
Sbjct: 53 LYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDL 112
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S S RN E I ++ NL A+ + L +
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGEGNI---------------FIKNLHPAIDNKALHD 157
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ FGF+ + +++A A ++NG R + V + V
Sbjct: 158 TFSAFGRILSCKVATDELG-NSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 216
Query: 281 RTE 283
+ +
Sbjct: 217 KKD 219
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + E G S+ G++ + +A+ AI +
Sbjct: 141 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-ELGNSKCFGFVHYETAEAAEAAIENV 199
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V + R E + K F ++V NL+ ++L+
Sbjct: 200 NGMLLNDREVFVGKHVSKKDRESKFEEM----KANFT-----NVFVKNLAPEYTDQELKE 250
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +G + S+ + D +G+ ++ FGF++F + + A+ LN + G+ I V
Sbjct: 251 LFSAYGPITSSYLEKDLEGK-SKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIYV 304
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 6/163 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S D EL E+F FG + + V R E G S+ G++ SA AI +
Sbjct: 196 IYVKNLDASVDEKELSEVFSKFGEIQNAVVMRG-ENGASKEFGFINFADHASALIAIDEM 254
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+ D +++ V + N R + K K+ Y+ + LYV NL +V E L
Sbjct: 255 NEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLN-LYVKNLDDSVDDERL 313
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
R F +FG + SA+V+ D K +R FGF+ F + + AL+
Sbjct: 314 RQEFSKFGDITSAKVMSDNK--QSRGFGFVCFKTPEAANKALT 354
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 21/191 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI-------SRGCGYLTMGSINSA 154
+++ NL +S D L + F FG +LS +V + + G S G G++ + +A
Sbjct: 96 IFIKNLDKSIDNKALYDTFSAFGNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAA 155
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWA 213
+ AI ++G + G+++ V + R KI E S +YV NL +
Sbjct: 156 EKAIAKINGMLLNGKQVFVGPFVKKTERL-----------KILSNEDSFTNIYVKNLDAS 204
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRT 272
V ++L F +FG + +A V+ G ++ FGFI+F+ A A+ +N DF+ +
Sbjct: 205 VDEKELSEVFSKFGEIQNAVVMRGENG-ASKEFGFINFADHASALIAIDEMNEKDFKNKK 263
Query: 273 IIVREGVDRTE 283
+ V + E
Sbjct: 264 LFVGRAQKKNE 274
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 350 VTEMNGRIVGSKPLYVALA 368
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 350 VTEMNGRIVGSKPLYVALA 368
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 5/166 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V R+ +G S+G G+++ S +AK A+ +
Sbjct: 192 VYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDS-SGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK-IFVYESPHKLYVGNLSWAVKPEDLR 220
+G D+ G+ + V + R + + K+ F KLY+ NL + E LR
Sbjct: 251 NGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLR 310
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F FG++ +V+ + +G+ ++ FG I FSS E A++ +NG
Sbjct: 311 REFSSFGSISRVKVMQE-EGR-SKGFGLICFSSPEEATKAMTEMNG 354
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 85/176 (48%), Gaps = 24/176 (13%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTV---LSVEVSRNPETGISRGCGYLTMGSI 151
++ R LYV +L D++E L +FK F TV LS+ + R+ T S G Y+ +
Sbjct: 5 AKYRQASLYVGDLHA--DVTEDL-LFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A+ A+ ++ + G+ +R+ +S R+A S +F + NL
Sbjct: 62 ADAQKALDTMNFDLIKGKSIRLMWS------QRDAYLRKSGIGNVF---------IKNLD 106
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
++ + L HF FG ++S++V+ D +G +R + F+ F + D A+ +NG
Sbjct: 107 KSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEMNGA 160
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 93 PRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
R R R C+ LY+ NL + D +L F FG++ V+V + E G S+G G +
Sbjct: 283 KRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ--EEGRSKGFGLICFS 340
Query: 150 SINSAKNAIIALDGSDVGGREMRV 173
S A A+ ++G +G + + +
Sbjct: 341 SPEEATKAMTEMNGRILGSKPLNI 364
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 350 VTEMNGRIVGSKPLYVALA 368
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L E+F +G +S+ V + E G SRG G+++ A+ A+ +
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G ++ G+ M V R + +T + LYV NL + E LR
Sbjct: 252 NGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGQPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|402078039|gb|EJT73388.1| nuclear localization sequence binding protein [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 499
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 7/177 (3%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+P L+V +L + D L E FK G V+S V + ETG S+G GY+ S A+ A
Sbjct: 251 KPATLFVGSLSWNVDDDMLKEEFKFCGEVVSARVITDRETGRSKGFGYVDFASPADAEKA 310
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVK 215
G+ + GR+++V FS ++ +A+ KK SP L+VGNL +
Sbjct: 311 HAEKQGAFIDGRQIKVDFSTGKSNNNDSADRA----KKFGDVTSPESDTLFVGNLPFDAD 366
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGR 271
+ + FG + S R+ D++ + FG++SF+S + +A + L+G GR
Sbjct: 367 EDVVSEFFGSVAEIKSLRLPTDQESGRRKGFGYVSFNSVEDAKSAFTQLSGQSINGR 423
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAER 257
+ P L+VG+LSW V + L+ F G VVSARV+ DR+ ++ FG++ F+S DAE+
Sbjct: 250 DKPATLFVGSLSWNVDDDMLKEEFKFCGEVVSARVITDRETGRSKGFGYVDFASPADAEK 309
Query: 258 DAALSLNGTDFRGRTIIV 275
A G GR I V
Sbjct: 310 -AHAEKQGAFIDGRQIKV 326
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP D + E F + S+ + + E+G +G GY++ S+ AK+A L
Sbjct: 356 LFVGNLPFDADEDVVSEFFGSVAEIKSLRLPTDQESGRRKGFGYVSFNSVEDAKSAFTQL 415
Query: 162 DGSDVGGREMRVRFSI 177
G + GR R+ +S
Sbjct: 416 SGQSINGRPCRLDYST 431
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 16/186 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +++ + G S+G G++ + SA+ AI
Sbjct: 126 ANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATD-SNGQSKGYGFVQYDNEESAQGAID 184
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R + E+ K +YV NLS + ++L
Sbjct: 185 KLNGMLMNDKQVYVGHFL----RKQERESTTGMTKF-------QNVYVKNLSESTTDDEL 233
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIVRE 277
+ FG FG + SA V+ D G+ ++ FGFI+F + DA + A SLNG F + V +
Sbjct: 234 KKVFGEFGNITSAVVMRDADGK-SKCFGFINFETAEDAAK-AVESLNGKKFDDKEWYVGK 291
Query: 278 GVDRTE 283
++E
Sbjct: 292 AQKKSE 297
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 9/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S EL ++F FG + S V R+ + G S+ G++ + A A+ +L
Sbjct: 219 VYVKNLSESTTDDELKKVFGEFGNITSAVVMRDAD-GKSKCFGFINFETAEDAAKAVESL 277
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVGNLSWAVKPEDL 219
+G +E V + + R + ++ K V Y+ + LYV NL + E L
Sbjct: 278 NGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLN-LYVKNLDDTIDDEKL 336
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+ F FGT+ S +V+ D G +R GF++FS+ E ALS + G+ I+ +
Sbjct: 337 KELFSEFGTITSCKVMRDPSG-ISRGSGFVAFSTSEEASRALS----EMNGKMIVSK 388
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ + +E + + LYV NL + D +L E+F FGT+ S +V R+P +GISRG G++
Sbjct: 307 EQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDP-SGISRGSGFV 365
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G + + + V + R +A S
Sbjct: 366 AFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFS 410
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALS 262
LYVG+L + V L + F + G VVS RV D + + +G++++S +DA R A
Sbjct: 40 LYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASR-AMEM 98
Query: 263 LNGTDFRGRTIIV 275
LN T G++I V
Sbjct: 99 LNFTPVNGKSIRV 111
>gi|358386930|gb|EHK24525.1| hypothetical protein TRIVIDRAFT_71881 [Trichoderma virens Gv29-8]
Length = 571
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 15/214 (7%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+DE N N GGN E+ R R ++V L EL E F+ G V
Sbjct: 162 DDERNDARNEGGNA----PLTEDERDRR---TVFVQQLAARLRTRELKEFFEKVGAVNEA 214
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS-IDMNSRTRNAEA 188
++ ++ +G S+G GY+ + +S + A+ L G + G + V+ + + N + RN +A
Sbjct: 215 QIVKDRISGRSKGVGYVEFKNEDSVQLAL-QLTGQKLLGIPVIVQHTEAEKNRQARNPDA 273
Query: 189 LISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
P I H+LYVGN+ + V +DL+ F FG + ++ D G+ +R +GF
Sbjct: 274 SNGHPNSIPF----HRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDDNGR-SRGYGF 328
Query: 249 ISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
+ F + R+A +NG D GR I V G D+
Sbjct: 329 VQFRDAGQAREALEKMNGFDLAGRPIRVGLGNDK 362
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL D L E F FG VLS +V+ + G S+G G++ + A+
Sbjct: 117 RSGHANVFIKNLDTKIDNKALYETFASFGPVLSCKVAVD-NNGQSKGYGFIQFENEEDAQ 175
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+AI L+G V RE+ V + R EA SP F +YV NLS
Sbjct: 176 SAINRLNGMLVNDREVYVGPFV---RRLERIEANGSPK---FT-----NVYVKNLSETTS 224
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTII 274
EDL+ F +G + SA V+ D+ G+ +R FGF++F S D+ A LNG F +
Sbjct: 225 DEDLKKIFSSYGAITSAIVMKDQNGK-SRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWY 283
Query: 275 V 275
V
Sbjct: 284 V 284
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 32/198 (16%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L ++F +G + S V ++ + G SRG G++ S +SA A+ L
Sbjct: 214 VYVKNLSETTSDEDLKKIFSSYGAITSAIVMKD-QNGKSRGFGFVNFQSPDSAAAAVEKL 272
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + E++ +F + NSR +A LY
Sbjct: 273 NGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAA--------------NLY 318
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ NL + E L+ F FG++ S +V+ D++G ++ GF++FS+ E ALS +NG
Sbjct: 319 LKNLGDTIDEERLKELFSEFGSITSCKVMLDQQG-LSKGSGFVAFSTPEEASRALSEMNG 377
Query: 266 TDFRGRTIIVREGVDRTE 283
+ + V R E
Sbjct: 378 KMIGKKPLYVAIAQRREE 395
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 20/156 (12%)
Query: 80 GGNEVDDDSSVEEPRS----RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
G E + + E+ R+ + + LY+ NL + D L E+F FG++ S +V +
Sbjct: 291 GEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLD- 349
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISP--- 192
+ G+S+G G++ + A A+ ++G +G + + V + R +A S
Sbjct: 350 QQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQRREERMARLQAHFSQIQA 409
Query: 193 ------PKKIFVYE------SPHKLYVGNLSWAVKP 216
P + Y +PH+LY G + + P
Sbjct: 410 PGLPTLPSGLPGYHPGTPRLAPHQLYFGQGTPGMMP 445
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L VK L + F + VVS RV D+ G T+ + +++FS+ + A+ L
Sbjct: 35 LYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAMEVL 94
Query: 264 NGTDFRGRTI 273
N T G+ I
Sbjct: 95 NFTPLNGKPI 104
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 11/169 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FGT+ SA+V+ + G +R FGF+ FSS E A++ +NG
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSRGFGFVCFSSPEEATKAVTEMNG 355
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSGVGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R +R
Sbjct: 232 GFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL D L + F PFGT+ S +V E G SRG G++ S A A
Sbjct: 292 QVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMM--EGGRSRGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G V + + V +
Sbjct: 350 VTEMNGIIVATKPLYVSLA 368
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 12/177 (6%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D + L E+F FG LSV+V + E G S+G G+++ +
Sbjct: 176 ARAREFTNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTD-ERGRSKGFGFVSYATHED 234
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGN 209
A+ A+ ++G ++ GR + V + R R+ E + ++ Y+ + LYV N
Sbjct: 235 AQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQ--DRVTRYQGVN-LYVKN 291
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
L + E LR F FGT+ SA+V+ + G +R FGF+ FS+ D A +NG
Sbjct: 292 LDDTIDDERLRTEFSPFGTITSAKVMME--GGHSRGFGFVCFSAPDEAAKAVTEMNG 346
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ T S G Y+ + A+ +
Sbjct: 2 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLE 61
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ ++V NL ++ L
Sbjct: 62 TMNLDVIKGKPVRIMWSQRDPSLRKSGVG---------------NIFVKNLEKSIDNRAL 106
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
+ F FG ++S +V+ D G ++ +GF+ F + + A+ +NG + + V
Sbjct: 107 FDAFSGFGNILSCKVVSDENG--SKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHF 164
Query: 279 VDRTE 283
R E
Sbjct: 165 KSRKE 169
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR-------- 94
R GF V E+A DE+NGK+ VG + + E R
Sbjct: 218 RGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQD 277
Query: 95 --SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
+R + LYV NL + D L F PFGT+ S +V E G SRG G++ + +
Sbjct: 278 RVTRYQGVNLYVKNLDDTIDDERLRTEFSPFGTITSAKVMM--EGGHSRGFGFVCFSAPD 335
Query: 153 SAKNAIIALDGSDVGGREMRV 173
A A+ ++G V + + V
Sbjct: 336 EAAKAVTEMNGKLVTSKPLYV 356
>gi|261327112|emb|CBH10088.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 426
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 90 VEEPRSRARPCE------LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
V+ P S+ P E L V NL D + L ++F P+G +LS V RN TG S G
Sbjct: 71 VKLPESKLTPNECQSKTNLIVRNLSNRVDEAVLKQIFSPYGEILSAAVMRNIHTGDSLGT 130
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH 203
++ + A+ A++ G V GR + V+++ + T EA KKI
Sbjct: 131 AFVRFATTEQARAALVGCHGRVVCGRVLSVQWAKRQHDGTPVGEAR----KKIV------ 180
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT--------TRVFGFISFSSDA 255
KL++ N+ V PED++ F RFGTV S + D T R F++F+
Sbjct: 181 KLFIRNIPLDVGPEDVQRLFERFGTVESVSLHKDTAAATPTTDNSRPQRRIAFVTFTESG 240
Query: 256 ERDAA 260
D A
Sbjct: 241 VADRA 245
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 180 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEM 238
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 239 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 295
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V+ + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 296 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAV----TEMNGRIV 345
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + ++A AI +
Sbjct: 88 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 145
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 146 NGMLLNDRKVFVGRF----KSR-KEREAELGAKAKEFT-----NVYIKNFGDDMDDERLK 195
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279
FG++G +S +V+ D G+ ++ FGF+SF E + A+ +NG D G+ + V
Sbjct: 196 ELFGKYGKTLSVKVMTDPTGK-SKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQ 254
Query: 280 DRTE 283
+ E
Sbjct: 255 KKVE 258
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V EEA +E+NGKD G +V+ + + +E SR
Sbjct: 219 GFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRY 278
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 279 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKA 336
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 337 VTEMNGRIVGSKPLYVALA 355
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 150 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAHQAIKHV 208
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+S ++ R
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NIYVKNISTEASDDEFRE 259
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G + S+ + D++G+ +R FGF++F++ ++ A L+G DFRG+ + V
Sbjct: 260 LFEKYGDITSSSLARDQEGK-SRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQK 318
Query: 281 RTE 283
+ E
Sbjct: 319 KHE 321
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ E E+F
Sbjct: 212 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNIYVKNISTEASDDEFRELF 261
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S ++R+ E G SRG G++ + SA A+ L G D G+++ V + +
Sbjct: 262 EKYGDITSSSLARDQE-GKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKH 320
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NL V E LR F FG + SA+V+ D
Sbjct: 321 EREEELRKSYEAARLEKANKYQGVN-LYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRD 378
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 21/195 (10%)
Query: 86 DDSSVEEPRSRA----RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
+D+S P S A LYV L S + L E+F G V S+ V R+ T S
Sbjct: 42 EDASAPTPSSAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDAVTRRSL 101
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G Y+ S + A+ L+ + + GR R+ +S + + +
Sbjct: 102 GYAYVNYNSTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG------------- 148
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAA 260
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A
Sbjct: 149 --NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETDEAAHQAI 205
Query: 261 LSLNGTDFRGRTIIV 275
+NG + + V
Sbjct: 206 KHVNGMLLNEKKVYV 220
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 92/184 (50%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ ETG S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N E LR
Sbjct: 160 NGMLLNGKKVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDFSDEMLRE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++G + S +V++ G ++R FGF++F DA A + LNG + G+ + V
Sbjct: 211 MFEKYGRITSHKVMYKEDG-SSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N F L EMF+ +G + S +V E G SRG G++ ++A+ A + L
Sbjct: 194 VYVKNFGEDFSDEMLREMFEKYGRITSHKVMYK-EDGSSRGFGFVAFEDPDAAERACMEL 252
Query: 162 DGSD-VGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + V G+ + V + R R E L S +++ Y+ + LYV NL +
Sbjct: 253 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDD 309
Query: 217 EDLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
E LR F FGT+ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 310 ERLRKEFAPFGTITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 360
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKTIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V +
Sbjct: 118 TFSAFGNILSCKVAQDETG-ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ--DRITRYQVVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+ FG ++S V+ D G ++ +GF+ F + +A A +NG GR + V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRKE 178
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 14/192 (7%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+ P+ + ++V NLP EL +M FG V S V ++ E G S+G G++
Sbjct: 192 DRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKD-EKGSSKGFGFINFKD 250
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI------SPPKKIFVYESPHK 204
A + AL+ ++GG+ V ++ +T EA++ S ++ Y+
Sbjct: 251 AECAAKCVEALNDKEIGGK---VLYAGRAQKKTER-EAMLRQKVEESKQERYLKYQG-MN 305
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYV NL+ V + LR+ F GT+ S +V+ D G+ ++ FGF+ F+S E A++ +
Sbjct: 306 LYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGK-SKGFGFVCFTSHDEATRAVTEM 364
Query: 264 NGTDFRGRTIIV 275
NG +G+ + V
Sbjct: 365 NGKMVKGKPLYV 376
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 20/178 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI---NSAKNAI 158
LYV +L + ++L E+F G V S+ V R+ T S G Y+ S +A+ A+
Sbjct: 23 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAERAM 82
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L+ + G+ MR+ +S R+ A S IF+ NL ++ +
Sbjct: 83 ETLNYHVLNGKPMRIMWS------HRDPSARKSGVGNIFIK---------NLDKSIDAKA 127
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
L + F FG ++S +V D G ++ +GF+ F A D A+ ++N + G+ + V
Sbjct: 128 LHDTFSAFGKILSCKVATDANG-VSKGYGFVHFEDQAAADRAIQTVNQKEIEGKIVYV 184
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S +E + + LYV NL D L ++F GT+ S +V ++ +G S+G G++
Sbjct: 291 EESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKD-TSGKSKGFGFV 349
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
S + A A+ ++G V G+ + V + + R EA
Sbjct: 350 CFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQLEA 391
>gi|255645618|gb|ACU23303.1| unknown [Glycine max]
Length = 315
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 38/266 (14%)
Query: 15 FTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEIN 74
F + TP + P F +S F +P+LS ++ L + A E
Sbjct: 30 FLRKTPHSQPINFSLSS------FHFPRLSLITTKQ-------TLNLTPTHASTSE---- 72
Query: 75 GKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
+ ++ EE SR R L N+P + ++ +F+ G VL VE+S
Sbjct: 73 -------QQTEEPLVSEEEFSRTR---LLAQNVPWTSTPEDIRTLFEKHGKVLEVELSMY 122
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
+ +RG ++ MGS A A+ L+ + GR ++V ++ +T A + P
Sbjct: 123 -KKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYARPKKEKT--APPPVKP-- 177
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSS 253
K+ + L+V NLS+ +DL+ F G VVSA V++ + +GF+SF S
Sbjct: 178 KVVTF----NLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRPSGYGFVSFKS 233
Query: 254 DAERDAALS-LNGTDFRGRTIIVREG 278
E +AAL+ G F GR I V G
Sbjct: 234 KKEAEAALAEFQGKVFMGRPIRVDRG 259
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E+G S+G G++ + +A AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ESGASKGYGFVHYETDEAAAQAIKHV 209
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R
Sbjct: 210 NGMLLNEKKVFVGHHIPKKDRQSKFEEM----KANFT-----NIYVKNIPVEATEEEFRE 260
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG V SA + D + +R FGF++F + A+ LNG DF+G+ + V
Sbjct: 261 LFEKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQK 320
Query: 281 RTE 283
+ E
Sbjct: 321 KHE 323
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 17/186 (9%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+P E E+F
Sbjct: 213 LLNEKKVFVGHHIPKKDR--------QSKFEE--MKANFTNIYVKNIPVEATEEEFRELF 262
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ FG V S ++R+ ETG SRG G++ + A A+ L+G D G+++ V + +
Sbjct: 263 EKFGDVTSASLARDAETGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKH 322
Query: 181 SRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
R R+ EA + +K Y+ + LYV NL + E LR F FG++ SA+V+
Sbjct: 323 EREEELRRSYEA--ARIEKASKYQGVN-LYVKNLDDDIDDEKLRELFQSFGSITSAKVMR 379
Query: 237 DRKGQT 242
D +T
Sbjct: 380 DTPAET 385
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 20/198 (10%)
Query: 82 NEVDDDSSVEEPRSRARP---CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
N D D++ P + P LYV L S + L E+F G+V S+ V R+ +
Sbjct: 40 NSEDQDAAGPTPTNAPHPQASASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISR 99
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
S G Y+ + + A+ L+ + + GR R+ +S + +N +
Sbjct: 100 RSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQG---------- 149
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AER 257
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A
Sbjct: 150 -----NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESG-ASKGYGFVHYETDEAAA 203
Query: 258 DAALSLNGTDFRGRTIIV 275
A +NG + + V
Sbjct: 204 QAIKHVNGMLLNEKKVFV 221
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+ FG ++S V+ D G ++ +GF+ F + +A A +NG GR + V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRKE 178
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|356515764|ref|XP_003526568.1| PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic-like [Glycine
max]
Length = 315
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 38/266 (14%)
Query: 15 FTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEIN 74
F + TP + P F +S F +P+LS ++ L + A E
Sbjct: 30 FLRKTPHSQPINFSLSS------FHFPRLSLITTKQ-------TLNLTPTHASTSE---- 72
Query: 75 GKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
+ ++ EE SR R L N+P + ++ +F+ G VL VE+S
Sbjct: 73 -------QQTEEPLVSEEEFSRTR---LLAQNVPWTSTPEDIRTLFEKHGKVLEVELSMY 122
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
+ +RG ++ MGS A A+ L+ + GR ++V ++ +T A + P
Sbjct: 123 -KKNRNRGLAFVEMGSPEEALEALNNLESYEFEGRVIKVNYARPKKEKT--APPPVKP-- 177
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSS 253
K+ + L+V NLS+ +DL+ F G VVSA V++ + +GF+SF S
Sbjct: 178 KVVTF----NLFVANLSYEASSKDLKEFFDLGTGRVVSAEVVYRDNPRRPSGYGFVSFKS 233
Query: 254 DAERDAALS-LNGTDFRGRTIIVREG 278
E +AAL+ G F GR I V G
Sbjct: 234 KKEAEAALAEFQGKVFMGRPIRVDRG 259
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 199 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 257
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 258 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 314
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 315 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 364
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 92/184 (50%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + ++A AI +
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 164
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 165 NGMLLNDRKVFVGRF----KSR-KEREAELGAKAKEFT-----NVYIKNFGDDMDDERLK 214
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279
F ++G +S +V+ D G+ ++ FGF+SF + + A+ +NG D G+ + V
Sbjct: 215 ELFSKYGKTLSVKVMTDPTGK-SKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 273
Query: 280 DRTE 283
+ E
Sbjct: 274 KKVE 277
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGKD G +V+ + + +E SR
Sbjct: 238 GFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRY 297
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 298 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 355
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 356 VTEMNGRIVGSKPLYVALA 374
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D + L E+F FG VLS +V++N E G SRG G++ S SA AI L
Sbjct: 132 IFVKNLNNSVDNASLQELFSKFGDVLSCKVAKN-EDGTSRGYGFVQFASQESADEAIGNL 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+GS R++ V I + R+ N + + LY+ +L + E ++
Sbjct: 191 NGSLFNDRKLHVATFIKKSERSANNDDKFT------------NLYMKHLDDDITEELVKL 238
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG +VS +++ R ++ FGF+SF + ++ A +++G + + V
Sbjct: 239 KFSQFGPIVSVKIMR-RPDGSSLGFGFVSFQNPESAIKAQETMHGMLLGSKALYVARAQK 297
Query: 281 RTE 283
+ E
Sbjct: 298 KEE 300
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L + F GTV SV V R+ T S GY+ S A A+ L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V + +RV +S R+ +A S IF V NL+ +V L+
Sbjct: 104 NHSLVLDKPIRVMWS------NRDPDARRSGVGNIF---------VKNLNNSVDNASLQE 148
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG V+S +V + G T+R +GF+ F+S D A+ +LNG+ F R + V +
Sbjct: 149 LFSKFGDVLSCKVAKNEDG-TSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIK 207
Query: 281 RTE 283
++E
Sbjct: 208 KSE 210
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ--DRITRYQVVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+ FG ++S V+ D G ++ +GF+ F + +A A +NG GR + V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRKE 178
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ--DRITRYQVVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+ FG ++S V+ D G ++ +GF+ F + +A A +NG GR + V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRKE 178
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 92/184 (50%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ ETG S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N E LR
Sbjct: 160 NGMLLNGKKVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDFSDEMLRE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++G + S +V++ G ++R FGF++F DA A + LNG + G+ + V
Sbjct: 211 MFEKYGRITSHKVMYKEDG-SSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N F L EMF+ +G + S +V E G SRG G++ ++A+ A + L
Sbjct: 194 VYVKNFGEDFSDEMLREMFEKYGRITSHKVMYK-EDGSSRGFGFVAFEDPDAAERACMEL 252
Query: 162 DGSD-VGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + V G+ + V + R R E L S +++ Y+ + LYV NL +
Sbjct: 253 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDD 309
Query: 217 EDLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
E LR F FGT+ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 310 ERLRKEFAPFGTITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 360
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKTIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V +
Sbjct: 118 TFTAFGNILSCKVAQDETG-ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G S+G G++ + +A +I +
Sbjct: 144 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGASKGYGFVHFETEEAANKSIDKV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L++
Sbjct: 203 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTEDKLKD 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG + G+ + V
Sbjct: 254 MFEKYGTITSHKVMSKDDGK-SRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGRAQ 312
Query: 280 DRTE 283
+ E
Sbjct: 313 KKAE 316
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L +MF+ +GT+ S +V + + G SRG G++ ++A+ A++ L
Sbjct: 237 VYVKNFGEDMTEDKLKDMFEKYGTITSHKVM-SKDDGKSRGFGFVAFEDPDAAEQAVLEL 295
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+ M V + R + + K ++ Y+ + LYV NL + E
Sbjct: 296 NGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN-LYVKNLDDTIDDER 354
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FGT+ SA+V+ + ++ FGF+ FS E A+ T+ GR +
Sbjct: 355 LRKEFTPFGTITSAKVMMEEG--RSKGFGFVCFSQPEEATKAV----TEMNGRIV 403
>gi|225683278|gb|EEH21562.1| nuclear localization sequence-binding protein [Paracoccidioides
brasiliensis Pb03]
Length = 492
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 11/197 (5%)
Query: 85 DDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
D++ V +++ P E L++ NL + D L F+ FG + V + + ++G S+
Sbjct: 229 DEEEVVAPKKTKVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSK 288
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA--EALISPPKKIFVY 199
G GY+ + A A A +++ GR++ V F+ N+R+ A + S +
Sbjct: 289 GFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVDFA---NARSNAAPRDRAQSRAQNFGDQ 345
Query: 200 ESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAE 256
SP L++GN++++ + F +G+++ R+ D + + FG++ FSS D
Sbjct: 346 RSPESDTLFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEA 405
Query: 257 RDAALSLNGTDFRGRTI 273
R A SLNG++ GR +
Sbjct: 406 RSAFESLNGSELAGRAM 422
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ N+ S D + + E F +G++L V + +PE+G +G GY+ SI+ A++A +L
Sbjct: 353 LFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESL 412
Query: 162 DGSDVGGREMRVRFS 176
+GS++ GR MR+ FS
Sbjct: 413 NGSELAGRAMRLDFS 427
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 182 RTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
+ + E +++P K L++GNLSW V E LR+ F FG + R++ DR
Sbjct: 226 KAEDEEEVVAPKKTKVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSG 285
Query: 242 TTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIV 275
++ FG++ F++ DA + A + T+ GR + V
Sbjct: 286 RSKGFGYVEFTNAEDAVK-AHAAKKDTELDGRKLNV 320
>gi|116791319|gb|ABK25933.1| unknown [Picea sitchensis]
Length = 221
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
Y S +L++G LS+ + + LR F +G V+ AR++HDR+ +R FGFISF+S+ E
Sbjct: 36 YMSSSRLFIGGLSYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFISFTSNEEAA 95
Query: 259 AALS-LNGTDFRGRTIIVREGVDRT 282
AA++ ++G D GR + V +RT
Sbjct: 96 AAITGMDGKDLHGRLVHVNYATERT 120
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
L++ L D L E F +G V+ + + ETG SRG G+++ S A AI
Sbjct: 39 SSRLFIGGLSYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFISFTSNEEAAAAI 98
Query: 159 IALDGSDVGGREMRVRFSID 178
+DG D+ GR + V ++ +
Sbjct: 99 TGMDGKDLHGRLVHVNYATE 118
>gi|72387121|ref|XP_843985.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175981|gb|AAX70104.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|70800517|gb|AAZ10426.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 386
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 90 VEEPRSRARPCE------LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
V+ P S+ P E L V NL D + L ++F P+G +LS V RN TG S G
Sbjct: 31 VKLPESKLTPNECQSKTNLIVRNLSNRVDEAVLKQIFSPYGEILSAAVMRNIHTGDSLGT 90
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH 203
++ + A+ A++ G V GR + V+++ + T EA KKI
Sbjct: 91 AFVRFATTEQARAALVGCHGRVVCGRVLSVQWAKRQHDGTPVGEAR----KKIV------ 140
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT--------TRVFGFISFSSDA 255
KL++ N+ V PED++ F RFGTV S + D T R F++F+
Sbjct: 141 KLFIRNIPLDVGPEDVQRLFERFGTVESVSLHKDTAAATPTTDNNRPQRRIAFVTFTESG 200
Query: 256 ERDAA 260
D A
Sbjct: 201 VADRA 205
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEINGKVIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|358399615|gb|EHK48952.1| hypothetical protein TRIATDRAFT_164478, partial [Trichoderma
atroviride IMI 206040]
Length = 571
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 11/203 (5%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
GNE + E+ R R ++V L EL E F+ G V ++ ++ +G S
Sbjct: 168 GNEGANAPLTEDERDRR---TVFVQQLAARLRTRELKEFFEKVGPVNEAQIVKDRISGRS 224
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVY 199
+G GY+ S ++ + A+ L G + G + V+ + + N + RN ++ P I
Sbjct: 225 KGVGYVEFKSEDAVQQAL-QLTGQKLLGIPVIVQHTEAEKNRQARNPDSTSGHPNSIPF- 282
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
H+LYVGN+ + V +DL+ F FG + ++ D G+ +R +GF+ F + R+
Sbjct: 283 ---HRLYVGNIHFNVTEQDLQAVFEPFGELEFVQLQKDDNGR-SRGYGFVQFRDAGQARE 338
Query: 259 AALSLNGTDFRGRTIIVREGVDR 281
A +NG D GR I V G D+
Sbjct: 339 ALEKMNGFDLAGRPIRVGLGNDK 361
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L E+F +G LS+ V + E+G S+G G+++ A+ A+ +
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTD-ESGKSKGFGFVSFERHEDAQRAVDEM 178
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K ++ Y+ + LYV NL + E L
Sbjct: 179 NGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVN-LYVKNLDDGLDDERL 237
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
R F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 238 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 288
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 28 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEKM 85
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF + + R AE + K F +Y+ N + E L+
Sbjct: 86 NGMLLNDRKVFVGRFK---SRKERGAE--MGARAKEFT-----NVYIKNFGEDMDDEKLK 135
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIV 275
F ++G +S RV+ D G+ ++ FGF+SF DA+R A +NG + G+ + V
Sbjct: 136 EIFSKYGPALSIRVMTDESGK-SKGFGFVSFERHEDAQR-AVDEMNGKEMNGKQVYV 190
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 32/152 (21%)
Query: 42 KLSSCWSRSHPA--------------GFRSVLAVVDEEAVVVEDEINGKD------NVGG 81
KL +S+ PA GF V E+A DE+NGK+ VG
Sbjct: 133 KLKEIFSKYGPALSIRVMTDESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGR 192
Query: 82 NEVDDDSSVEEPR----------SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+ + E R +R + LYV NL D L + F PFGT+ S +V
Sbjct: 193 AQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKV 252
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDG 163
E G S+G G++ S A A+ ++G
Sbjct: 253 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNG 282
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|261327113|emb|CBH10089.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 601
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V N+P +EL+++F P+G +LS V RN TG S G ++ + A+ A+ AL
Sbjct: 132 LFVSNIPHLLGKNELVDLFSPYGEILSAAVMRNIHTGDSLGTAFVRFATTEQAQAAMEAL 191
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G + GR M V+++ + T EA KKI KL+V N+ V DL
Sbjct: 192 TGYVLEGRSMVVQWAKRQHDDTPVGEAR----KKIM------KLFVRNIPLDVSDADLTE 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVF----GFISFSSD--AERDA 259
F FG V + D R FI+F +D AER A
Sbjct: 242 VFSAFGPVKGVSIHKDTTPNAGRHLERRIAFITFHTDGVAERAA 285
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|388503916|gb|AFK40024.1| unknown [Medicago truncatula]
Length = 324
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V NLP S ++ ++F GTV+ VE+ ++ + G +G ++TM S A+ A+
Sbjct: 98 LIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKD-GKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +++ GR +RV F+ + + PP E+ + +Y NL+W + LR+
Sbjct: 157 NATEISGRILRVEFA-------KGFKKPRPPPPAPTPKEARYVIYASNLAWKARSTHLRD 209
Query: 222 HFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276
F F T VSARV+ G + +GF+S+ ++ E +AA+ +L G + GR ++V+
Sbjct: 210 IFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAIFALQGKELLGRPLLVK 266
>gi|239813338|ref|YP_002942248.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
gi|239799915|gb|ACS16982.1| RNP-1 like RNA-binding protein [Variovorax paradoxus S110]
Length = 137
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
KLYVGNL+++V+ DL FG FG++VSA+V+ +R ++ FGF+ +DAE AA+ +
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGSIVSAKVMMERDTGRSKGFGFVEMGTDAEALAAVEA 63
Query: 263 LNGTDFRGRTIIVRE 277
+NG +GR + V E
Sbjct: 64 MNGHSLQGRALTVNE 78
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S ++L + F FG+++S +V +TG S+G G++ MG+ A A+ A
Sbjct: 4 KLYVGNLAYSVRDNDLEQAFGEFGSIVSAKVMMERDTGRSKGFGFVEMGTDAEALAAVEA 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G + GR + V + M +R
Sbjct: 64 MNGHSLQGRALTVNEARPMEAR 85
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A +AI ++
Sbjct: 146 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETAEAANSAIKSV 204
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ ++ R
Sbjct: 205 NGMLLNEKKVFVGHHIPKKDRMSKFEEM----KANFT-----NIYVKNIDPEATDDEFRA 255
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTIIV 275
F ++G + SA + HD++G+ +R FGF+++ DA + A LN +DF+G+ + V
Sbjct: 256 LFEKYGDITSASLAHDQEGK-SRGFGFVNYIRHEDANK-AVEELNNSDFKGQALYV 309
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 103/237 (43%), Gaps = 25/237 (10%)
Query: 43 LSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDD-DSSVEEPRSRARP-- 99
+S + + PAG S A A +++N GN+V+D + S A P
Sbjct: 1 MSDVQNATSPAGQASPDA-----AATNGNQVNTTLPAPGNDVNDMPTPTSAAPSNANPNS 55
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV L S + L E+F G V S+ V R+ T S G Y+ S N + A+
Sbjct: 56 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALE 115
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ + + G+ R+ +S + + + +++ NL A+ + L
Sbjct: 116 ELNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDGAIDNKAL 160
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
+ F FG ++S +V D G ++ +GF+ + +++A A S+NG + + V
Sbjct: 161 HDTFAAFGNILSCKVAQDEHG-NSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFV 216
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD + S EE +A +YV N+ E +F
Sbjct: 208 LLNEKKVFVGHHIPKKDRM--------SKFEE--MKANFTNIYVKNIDPEATDDEFRALF 257
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S ++ + E G SRG G++ A A+ L+ SD G+ + V + +
Sbjct: 258 EKYGDITSASLAHDQE-GKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKH 316
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LYV NL+ + ++LR F +G + SA+V+ D
Sbjct: 317 EREEELRKQYEAQRQEKSAKYQGVN-LYVKNLADEIDDDELRKIFEPYGAITSAKVMRD 374
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSGVGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R +R
Sbjct: 232 GFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL D L + F PFGT+ S +V E G S+G G++ S A A
Sbjct: 292 QVVNLYVKNLDDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G V + + V +
Sbjct: 350 VTEMNGRIVATKPLYVALA 368
>gi|378731264|gb|EHY57723.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 562
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 8/182 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL++ F+ G V ++ ++ +G S+G GY+ + S AI +
Sbjct: 171 VFVQQLAARLRTKELIQFFEKAGPVKEAQIVKDRVSGRSKGVGYVEFKNEESVPLAI-QM 229
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + + + + N + RN EA S + H+LYVGN+ +++ +DL+
Sbjct: 230 TGQKLLGIPIIAQLTEAEKNRQARNPEASTSHHNSVPF----HRLYVGNIHFSITEQDLQ 285
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ D G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 286 NVFEPFGELEFVQLQKDETGR-SRGYGFVQFRDPNQAREALEKMNGFDLAGRPIRVGLGN 344
Query: 280 DR 281
D+
Sbjct: 345 DK 346
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG SRG G+++ A A+ +
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G+++ G+ + V R M + R E L ++I Y+ + LY+ NL + E
Sbjct: 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 309
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V+ + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 310 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAV----TEMNGRIV 359
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 94/184 (51%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + ++A AI +
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 159
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + + L+
Sbjct: 160 NGMLLNDRKVFVGRFK----SR-KEREAEMGAKAKEFT-----NVYIKNFGDDMDDQRLK 209
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
F ++G +S +V+ D G++ R FGF+S+ + + A+ +NGT+ G+T+ V
Sbjct: 210 ELFDKYGKTLSVKVMTDPTGKS-RGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQ 268
Query: 280 DRTE 283
+ E
Sbjct: 269 KKME 272
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 118
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 119 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKS 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 286 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSS 343
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 344 PEEATKAVTEMNGRIVGSKPLYVALA 369
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 4/176 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N+ E+ E+F PFGTV S + ++ E G SRG ++ +A +I +L
Sbjct: 243 VYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAE-GKSRGFAFVNYEEHEAAVKSIESL 301
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPEDLR 220
+ D G+++ V + + R + + + +S L+V NL ++ E L+
Sbjct: 302 NDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKLK 361
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F FGT+ S +V+ D G+ ++ FGF+SFSS E A+S +N G+ + V
Sbjct: 362 EEFQSFGTISSVKVMIDESGK-SKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYV 416
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 17/181 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ ++ + AI L
Sbjct: 62 LYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDEL 121
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V G+ +R+ +S ++ RN E +++ NL A+ + L +
Sbjct: 122 NYSVVKGQPIRIMWSQRDPAKRRNGEG---------------NVFIKNLHPAIDNKALHD 166
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ F S AA+ ++NG + V V
Sbjct: 167 TFSAFGRILSCKVATDNFGQ-SKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVA 225
Query: 281 R 281
R
Sbjct: 226 R 226
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 18/186 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + G S+G G++ S +A+ AI +
Sbjct: 150 VFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-NFGQSKGFGFVHFESPEAAQAAIENV 208
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + E+ V + R E +I K F +YV N+ E+++
Sbjct: 209 NGMLLNNNEVYVGPHVARRDRQSKLEEVI----KSFT-----NVYVKNIDLEASEEEVKE 259
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL----SLNGTDFRGRTIIVRE 277
F FGTV S + D +G+ +R F F+++ E +AA+ SLN D++G+ + V
Sbjct: 260 LFTPFGTVTSFYLEKDAEGK-SRGFAFVNYE---EHEAAVKSIESLNDQDYKGKKLYVGR 315
Query: 278 GVDRTE 283
++E
Sbjct: 316 AQKKSE 321
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++++ L+V NL S D +L E F+ FGT+ SV+V + E+G S+G G+++ S
Sbjct: 336 EKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMID-ESGKSKGFGFVSFSSP 394
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ + G+ + V + + R E I
Sbjct: 395 EEASRAISEMNQHMLAGKPLYVALAQRKDVRRSQLEQQIQ 434
>gi|358370208|dbj|GAA86820.1| RNA splicing factor (Pad-1) [Aspergillus kawachii IFO 4308]
Length = 571
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 20/202 (9%)
Query: 93 PRSRAR---PCE-------LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
PRSR R P E ++V L EL+ F+ G V ++ ++ +G S+G
Sbjct: 164 PRSRERTPEPTEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKG 223
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYES 201
GY+ S ++ AI L G + G + + + + N + RN EA + +
Sbjct: 224 VGYVEFKSEDAVAPAI-QLTGQKLLGIPIIAQLTEAEKNRQARNPEASSGN-----NHAA 277
Query: 202 P-HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDA 259
P H+LYVGN+ +++ DL+N F FG + ++ D G+ +R +GF+ F + R+A
Sbjct: 278 PFHRLYVGNIHFSITESDLQNVFEPFGELEFVQLQKDETGR-SRGYGFVQFRDPNQAREA 336
Query: 260 ALSLNGTDFRGRTIIVREGVDR 281
+NG D GR I V G D+
Sbjct: 337 LEKMNGFDLAGRAIRVGLGNDK 358
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+ S S+L +F+PFG + V++ ++ ETG SRG G++ N A+ A+ +
Sbjct: 282 LYVGNIHFSITESDLQNVFEPFGELEFVQLQKD-ETGRSRGYGFVQFRDPNQAREALEKM 340
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G D+ GR +RV D + NA+ + S
Sbjct: 341 NGFDLAGRAIRVGLGNDKFTPDSNAQRMQS 370
>gi|89257430|gb|ABD64922.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing
protein [Brassica oleracea]
Length = 426
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 9/185 (4%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ + L E F+ FG VL + ++ TG +RG G+L A+ ++
Sbjct: 5 CKLFIGGISWETTEDRLREYFQSFGEVLEAVIMKDRATGRARGFGFLVFADPTVAERVVL 64
Query: 160 ---ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+DG V ++ R D R++ +L P + K++VG L+ +V
Sbjct: 65 IRHVIDGKIVEAKKAVPR--DDHVVLNRSSSSLQGSPGPA----TSKKIFVGGLASSVTE 118
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+ + +F +FGT+ V++D + Q R FGFISF S+ D L + G+ + V+
Sbjct: 119 AEFKKYFAQFGTITDVVVMYDHRTQRPRGFGFISFESEEAVDRVLQRTFHELNGKMVEVK 178
Query: 277 EGVDR 281
V +
Sbjct: 179 LAVPK 183
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
ES KL++G +SW + LR +F FG V+ A ++ DR R FGF+ F+
Sbjct: 2 ESSCKLFIGGISWETTEDRLREYFQSFGEVLEAVIMKDRATGRARGFGFLVFA 54
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 95/184 (51%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L++
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKD 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG + G+ + V
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L +MF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A+ T+ GR I+ +
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAV----TEMNGRIIVTK 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 11/169 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ +G SRG G++ A+ A+ +
Sbjct: 193 IYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRD-NSGHSRGFGFVNFEKHEEAQKAVDHM 251
Query: 162 DGSDVGGREMRV----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V G+++ V + + N R E L + + LYV NL ++ E
Sbjct: 252 NGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRY---RGVNLYVKNLDDSISDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 309 KLRTVFSPYGVITSAKVMTE--GDHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V+ + E G SRG G++ + +A+ AI +
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETNEAAQQAIGTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F S+ R EA + F +YV NLS + + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSQ-REREAELGAQALEFT-----NIYVKNLSVDMDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF++F E A+ +NG + G+ + V
Sbjct: 210 LFFAFGNMLSVKVMRDNSGH-SRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RAE 271
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNVF---------IKNLEDSIDSKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G +R FGF+ F +++A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFV 170
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGG--------------NEVDD--DSSVEEPR 94
H GF V EEA D +NGK+ G NE+ + ++ +
Sbjct: 229 HSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQ 288
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R R LYV NL S +L +F P+G + S +V E S+G G++ S A
Sbjct: 289 TRYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMT--EGDHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGCIVGTKPLYVALA 368
>gi|256828609|ref|YP_003157337.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
gi|256577785|gb|ACU88921.1| RNP-1 like RNA-binding protein [Desulfomicrobium baculatum DSM
4028]
Length = 85
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
+YVGNLSW+ DL++ F ++G V SA V+ DR +R FGF+ + R A ++N
Sbjct: 3 IYVGNLSWSTTDADLKSLFSQYGEVTSAHVIEDRATGRSRGFGFVEMDDEGARKAIQAVN 62
Query: 265 GTDFRGRTIIVRE 277
GTD +GRT+ V E
Sbjct: 63 GTDLQGRTLKVNE 75
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S ++L +F +G V S V + TG SRG G++ M A+ AI A+
Sbjct: 3 IYVGNLSWSTTDADLKSLFSQYGEVTSAHVIEDRATGRSRGFGFVEMDD-EGARKAIQAV 61
Query: 162 DGSDVGGREMRVRFSIDMNSRTR 184
+G+D+ GR ++V S SR R
Sbjct: 62 NGTDLQGRTLKVNESQPRESRPR 84
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 95/184 (51%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L++
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKD 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG + G+ + V
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L +MF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A+ T+ GR I+ +
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAV----TEMNGRIIVTK 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S++EE RS+ +YV N+ S D EMF PFGT +S + + E G S+ G++
Sbjct: 235 STIEEKRSKF--TNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVD-EEGNSKEFGFVN 291
Query: 148 MGSINSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESP 202
+ A+ A+ + ++GG+++ V +F + R R E + +K+ Y+
Sbjct: 292 YENHEDARRAVEEMHEKEIGGKQIYVGRAQKKFEREEELR-RQYEKIRE--EKLSKYQGV 348
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V N+ ++ E LR F FG + S +++ D K ++ FGF+ FS+ E A++
Sbjct: 349 N-LFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATKAVT 407
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 17/229 (7%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-SRARPCELYVCNL 107
RS G+ + L + D E + D +N V GN V S +P RA +++ NL
Sbjct: 104 RSLGYGYINYLDIADAERAL--DTLN-YTTVRGNPVRIMWSNRDPALRRAGTGNIFIKNL 160
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D L + F FG +LS +++ + E S G G++ ++ A+NAI ++G +
Sbjct: 161 HTTIDHKALHDTFSAFGKILSCKIAMDGER--SLGHGFVHYETMEMAENAIKHVNGMLLN 218
Query: 168 GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG 227
+++ V I R+ + I + F +YV N+ +V + F FG
Sbjct: 219 DQQVYVGLHISKKERS----STIEEKRSKFT-----NIYVKNIDASVDQKAFEEMFHPFG 269
Query: 228 TVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIV 275
T VS ++ D +G ++ FGF+++ + + R A ++ + G+ I V
Sbjct: 270 TTVSCVLMVDEEG-NSKEFGFVNYENHEDARRAVEEMHEKEIGGKQIYV 317
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 18/188 (9%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A P LY+ +L S + L E+F G V S+ V R+ T S G GY+ I A+
Sbjct: 62 ATPASLYIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRSLGYGYINYLDIADAER 121
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
A+ L+ + V G +R+ +S + + R A +++ NL +
Sbjct: 122 ALDTLNYTTVRGNPVRIMWS-NRDPALRRA--------------GTGNIFIKNLHTTIDH 166
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
+ L + F FG ++S ++ D G+ + GF+ + + + +A +NG + + V
Sbjct: 167 KALHDTFSAFGKILSCKIAMD--GERSLGHGFVHYETMEMAENAIKHVNGMLLNDQQVYV 224
Query: 276 REGVDRTE 283
+ + E
Sbjct: 225 GLHISKKE 232
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE S+ + L+V N+ S D +L + F FG + S ++ + +TGIS+G G++ +
Sbjct: 339 EEKLSKYQGVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSN 398
Query: 151 INSAKNAIIALDGSDVGGREM-----------RVRFSIDMNSRTRNAEALISPP 193
+ A A+ ++ + + + R + + M R A + PP
Sbjct: 399 PDEATKAVTEMNNRMLANKPIYVALAQRKEVRRQQLAAQMQQRAMRAHQQMMPP 452
>gi|164657762|ref|XP_001730007.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
gi|159103901|gb|EDP42793.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
Length = 638
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V L + D L F+ +GTVL V + ++G SRG GY+ + A A
Sbjct: 396 LWVGQLSWNVDNDWLKSEFEQYGTVLDARVQCDRDSGRSRGFGYVDFATSAEALRASKEA 455
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE--SP-HKLYVGNLSWAVKPED 218
G ++ GR +RV + R AE+ K F E +P + L++G L+WA+ +D
Sbjct: 456 HGKELDGRALRVDLQPARGPQDR-AESRA----KHFKDERSAPSNTLFIGGLAWALTEDD 510
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
+ N F FG V R+ + + FG++ F S D A ++NG GR I +
Sbjct: 511 IWNAFAEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALETMNGQALGGRPIRI 568
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSL 263
L+VG LSW V + L++ F ++GTV+ ARV DR +R FG++ F++ AE A+
Sbjct: 396 LWVGQLSWNVDNDWLKSEFEQYGTVLDARVQCDRDSGRSRGFGYVDFATSAEALRASKEA 455
Query: 264 NGTDFRGRTIIV-----REGVDRTES 284
+G + GR + V R DR ES
Sbjct: 456 HGKELDGRALRVDLQPARGPQDRAES 481
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ L + ++ F FG V V + + ++G +G GY+ S ++A A+ +
Sbjct: 497 LFIGGLAWALTEDDIWNAFAEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALETM 556
Query: 162 DGSDVGGREMRVRFS 176
+G +GGR +R+ F+
Sbjct: 557 NGQALGGRPIRIDFA 571
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 5/163 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL E +F FG + S + ++ E G S+G G++ + A+ A+ L
Sbjct: 257 LYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKD-EEGNSKGFGFVNFENHEDAQRAVEEL 315
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
D ++ G+ + V + + R K K Y+ LY+ NL V E L
Sbjct: 316 DNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQG-SNLYIKNLEDDVDDEKL 374
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
R F FGT+ S +V+ D KG T++ FGF+ FSS E A+S
Sbjct: 375 RAEFEPFGTITSCKVMRDEKG-TSKGFGFVCFSSPDEATRAMS 416
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + L E+F G V SV V R+ T S G Y+ + N + A+ L
Sbjct: 76 LYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQL 135
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + I ++ NL + + L +
Sbjct: 136 NYSQIRGKPCRIMWSQRDPGLRKTGQGNI---------------FIKNLDQGIDNKALHD 180
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FGTV+S +V D G ++ +GF+ + S+ +AA+ ++NG + + V + +
Sbjct: 181 TFAAFGTVLSCKVATDDSG-LSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHIS 239
Query: 281 RTE 283
R E
Sbjct: 240 RKE 242
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG + G+ + V
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN-LYVKNLDDSINDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A+ T+ GR I+ +
Sbjct: 312 LRREFAPFGTITSAKVMME--DGRSKGFGFVCFSAPEEATKAV----TEMNGRIIVTK 363
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +V+ +P G S+G G++ +A AI
Sbjct: 213 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIE 271
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V R E SP F + +YV NL+ +DL
Sbjct: 272 KLNGMLMNDKKVYV------GPFVRKQERDNSPGSVKF-----NNVYVKNLAETTTEDDL 320
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREG 278
+ FG+FGT+ S V+ D G+ ++ FGF++F S E A+ LNG F + V
Sbjct: 321 KEIFGKFGTITSVVVMRDGDGR-SKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRA 379
Query: 279 VDRTE 283
++E
Sbjct: 380 QKKSE 384
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 11/166 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L E+F FGT+ SV V R+ + G S+ G++ S + A A+ L
Sbjct: 306 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 364
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + +M + + + L K Y++ + LY+ NL V
Sbjct: 365 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADK---YQNTN-LYLKNLDDTVDD 420
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
E LR F FGT+ S +V+ D G +R GF++F S + AL+
Sbjct: 421 EKLRELFAEFGTITSCKVMRDSNG-ASRGSGFVAFKSADDASRALA 465
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G V+SV V R+ + S G Y+ + A A+ L
Sbjct: 127 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR +R+ +S S ++ A I ++ NL ++ + L +
Sbjct: 187 NFTPINGRPIRIMYSNRDPSLRKSGTANI---------------FIKNLDKSIDNKALHD 231
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G+ ++ +GF+ + D AA+ LNG + + V V
Sbjct: 232 TFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVR 290
Query: 281 RTE 283
+ E
Sbjct: 291 KQE 293
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG++LS +V N E G SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYN-EHG-SRGFGFVHFETHEAAQKAINTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSRQKR-EAELGARALGFT-----NIYVKNLHANVDEQRLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + S +V+ D GQ +R FGF++F E A+ +NG + G+ + V
Sbjct: 210 LFSQFGNMQSVKVMRDSNGQ-SRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RAE 271
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S L EMF P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------HRDPGLRKSGMGNIF---------IKNLENSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG+++S++V+++ G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFV 170
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E ++R + LYV NL S + L E+F +G + S +V E+ S+G G++ S
Sbjct: 285 QERQNRYQGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGTKPLYVALA 368
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGKD G +V+ + + +E SR
Sbjct: 232 GFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 350 VTEMNGRIVGSKPLYVALA 368
>gi|72387123|ref|XP_843986.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175980|gb|AAX70103.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|70800518|gb|AAZ10427.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 593
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V N+P +EL+++F P+G +LS V RN TG S G ++ + A+ A+ AL
Sbjct: 132 LFVSNIPHLLGKNELVDLFSPYGEILSAAVMRNIHTGDSLGTAFVRFATTEQAQAAMEAL 191
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G + GR M V+++ + T EA KKI KL+V N+ V DL
Sbjct: 192 TGYVLEGRSMVVQWAKRQHDDTPVGEAR----KKIV------KLFVRNIPLDVSDADLTE 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVF----GFISFSSD--AERDA 259
F FG V + D R FI+F +D AER A
Sbjct: 242 VFSAFGPVKGVSIHKDTTPNAGRHLERRIAFITFHTDGVAERAA 285
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + L EMF +G LSV+V + + G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ M R + ++ + R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKVLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|400598297|gb|EJP66014.1| CC1-like family splicing factor [Beauveria bassiana ARSEF 2860]
Length = 556
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 8/182 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL E F+ G V ++ ++ +G S+G GY+ +S A+ L
Sbjct: 172 VFVQQLAARLRTRELKEFFEKVGPVTEAQIVKDRISGRSKGVGYVEFKDEDSVATAL-QL 230
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + V+ + + N + RN EA P + H+LYVGN+ + V EDLR
Sbjct: 231 TGQKLLGIPVIVQVTEAEKNRQARNTEAGGPHPNHVPF----HRLYVGNIHFNVTEEDLR 286
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGV 279
F FG + ++ D + +R +GF+ F + R+A +NG D GR I V G
Sbjct: 287 AVFEPFGELEFVQLQKD-ESDRSRGYGFVQFRDATQAREALEKMNGFDLAGRPIRVGLGN 345
Query: 280 DR 281
D+
Sbjct: 346 DK 347
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNI---------------FVKNLDKSINNKVLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
FG ++S +V+ D G ++ +GF+ F + +A A +NGT R + V
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Score = 43.9 bits (102), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|344339676|ref|ZP_08770604.1| RNP-1 like RNA-binding protein [Thiocapsa marina 5811]
gi|343800412|gb|EGV18358.1| RNP-1 like RNA-binding protein [Thiocapsa marina 5811]
Length = 91
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
++YVGNL+++V +DLR+ FG++G + +A V+ D+ ++ FGF+ +++E DAA+ +
Sbjct: 2 RIYVGNLTYSVTDDDLRDVFGQYGELAAAEVIKDKFSGQSKGFGFVDMPNNSEADAAIKA 61
Query: 263 LNGTDFRGRTIIVREGVDRTE 283
LN TDF+GR + V E R E
Sbjct: 62 LNETDFKGRKLTVNEARPRAE 82
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L ++F +G + + EV ++ +G S+G G++ M + + A AI AL
Sbjct: 3 IYVGNLTYSVTDDDLRDVFGQYGELAAAEVIKDKFSGQSKGFGFVDMPNNSEADAAIKAL 62
Query: 162 DGSDVGGREMRV 173
+ +D GR++ V
Sbjct: 63 NETDFKGRKLTV 74
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG VLS +V+ + E G S+G G++ + +A+NAI ++
Sbjct: 132 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGNSKGYGFVHYETAEAAENAIKSV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R ++ I + F LYV N+ V E+ N
Sbjct: 191 NGMLLNDKKVYVGPHISRKER----QSKIDEMRAHFT-----NLYVKNIDPEVTDEEFEN 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F ++G V S+ + D +G+ FGF++F + E A+ +L+ +DF GR + V
Sbjct: 242 LFKQYGQVQSSLLKRDDQGRNLG-FGFVNFETHEEAQKAVDALHESDFHGRKLYVARAQK 300
Query: 281 RTE 283
+ E
Sbjct: 301 KAE 303
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 5/169 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA LYV N+ E +FK +G V S + R+ + G + G G++ + A+
Sbjct: 219 RAHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRD-DQGRNLGFGFVNFETHEEAQ 277
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ AL SD GR++ V + R + ++ Y+ + LY+ NL
Sbjct: 278 KAVDALHESDFHGRKLYVARAQKKAEREAELRKQYDQARQERMNKYQGVN-LYIKNLEDD 336
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
V E LR F FGT+ S RV+ D +G+ ++ FGF+ +S+ E A++
Sbjct: 337 VDDEKLRAEFEPFGTITSCRVMRDERGK-SKGFGFVCYSAPDEATKAVA 384
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + S L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 44 LYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 103
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 104 NYSSIKNRPCRIMWSQRDPALRKTGQGNI---------------FIKNLDEQIDNKALHD 148
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V+S +V D G ++ +GF+ + +++A +A S+NG + + V +
Sbjct: 149 TFAAFGNVLSCKVATDEHG-NSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHIS 207
Query: 281 RTE 283
R E
Sbjct: 208 RKE 210
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
D + +E ++ + LY+ NL D +L F+PFGT+ S V R+ E G S+G G++
Sbjct: 313 DQARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRD-ERGKSKGFGFV 371
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI 196
+ + A A+ ++ +G + + V + R + E+ I+ +++
Sbjct: 372 CYSAPDEATKAVAEMNNKMIGSKPLYVSLAQRKEIRRQQLESQIAQRQQL 421
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 7/178 (3%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
S +EE +A+ +YV N+ E ++F+ FG V S + R+ E G S+G G++
Sbjct: 218 QSKIEE--MKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRD-EEGRSKGFGFV 274
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
A+ + +L ++ G+++ V + R K K+ Y+ +
Sbjct: 275 NFEKHEEAQKGVESLHDFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVN- 333
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LY+ NL V E LR F FGT+ SA+V+ D KG +++ FGF+ FSS E A++
Sbjct: 334 LYIKNLEDEVDDERLRQEFEPFGTITSAKVMRDEKG-SSKGFGFVCFSSPDEATKAVA 390
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S + + + I ++ NL + + L +
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEGIDNKALHD 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG V+S +V D G+ ++ +GF+ + + D A+ ++NG + + V +
Sbjct: 155 TFAAFGNVLSCKVATDEHGR-SKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHIS 213
Query: 281 RTE 283
R E
Sbjct: 214 RKE 216
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ + E S+ + LY+ NL D L + F+PFGT+ S +V R+ E G S+G G++
Sbjct: 319 EQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRD-EKGSSKGFGFV 377
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
S + A A+ ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 378 CFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 432
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 14/189 (7%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL + D L E F FGT+LS +V+ + E G S+G G++ +A+
Sbjct: 124 RSGSANIFIKNLDKMIDNKSLHETFSSFGTILSCKVAMD-EGGQSKGFGFVQYEKEEAAQ 182
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
NAI +L+G + + + V + R + + K F + ++V NLS +
Sbjct: 183 NAIKSLNGMLINDKPVFVGPFLRKQERDHSFD------KTKF-----NNVFVKNLSESTT 231
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTII 274
EDL FG +G + SA V+ G+ +R FGFI+F + DA A LNG +
Sbjct: 232 KEDLLKIFGEYGNITSAVVMIGMDGK-SRCFGFINFENPDAASRAVQELNGKKINDKEWY 290
Query: 275 VREGVDRTE 283
V ++E
Sbjct: 291 VGRAQKKSE 299
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S S+L E+F G V+SV V R+ + S G Y+ + A A+ L
Sbjct: 42 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEVL 101
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + + +RV +S S R+ A +++ NL + + L
Sbjct: 102 NFAPLNNKPIRVMYSNRDPSSRRSGSA---------------NIFIKNLDKMIDNKSLHE 146
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FGT++S +V D GQ ++ FGF+ + +A ++A SLNG + + V
Sbjct: 147 TFSSFGTILSCKVAMDEGGQ-SKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFV 200
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 12/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S +LL++F +G + S V + G SR G++ + ++A A+ L
Sbjct: 221 VFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMD-GKSRCFGFINFENPDAASRAVQEL 279
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + +E V + +M + R + L K Y+ LY+ NL ++
Sbjct: 280 NGKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADK---YQG-LNLYLKNLDDSIGD 335
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
+ LR F FG + S +V+ D+ G ++ GF++FS+ E AL+ +NG G+ + V
Sbjct: 336 DQLRELFSNFGKITSCKVMRDQNG-LSKGSGFVAFSTREEASQALTEMNGKMISGKPLYV 394
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S +L E+F FG + S +V R+ + G+S+G G++ + A A+ +
Sbjct: 324 LYLKNLDDSIGDDQLRELFSNFGKITSCKVMRD-QNGLSKGSGFVAFSTREEASQALTEM 382
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEA-------------LISPPKKIFVYESPHKLYVG 208
+G + G+ + V F+ R +A ++P ++ +P +L+ G
Sbjct: 383 NGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMAPQQLFYG 442
Query: 209 NLSWAVKP 216
A+ P
Sbjct: 443 QAPPAMIP 450
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHV 206
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V E+ R
Sbjct: 207 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NIYVKNVEQDVTDEEFRG 257
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F ++G + SA + D + +R FGF++FS AA+ +LN + +G+ + V
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQK 317
Query: 281 RTE 283
+ E
Sbjct: 318 KHE 320
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ + E +F
Sbjct: 210 LLNEKKVFVGHHIAKKDR--------QSKFEE--MKANFTNIYVKNVEQDVTDEEFRGLF 259
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S +SR+ ETG SRG G++ +A A+ AL+ ++ G+++ V + +
Sbjct: 260 EKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NLS + E LR F +G + SA+V+ +
Sbjct: 320 EREEELRKQYEAARIEKASKYQGVN-LYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + GR R+ +S + + + +++ NL A+
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAI 157
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 158 DNKALHDTFAAFGNILSCKVAQDEYG-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKV 216
Query: 274 IV 275
V
Sbjct: 217 FV 218
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAHQAIKHV 209
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+S ++ R
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NIYIKNISTEASDDEFRE 260
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G + S+ + D++G+ +R FGF++F++ ++ A L+G DFRG+ + V
Sbjct: 261 LFEKYGDITSSSLARDQEGK-SRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQK 319
Query: 281 RTE 283
+ E
Sbjct: 320 KHE 322
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +Y+ N+ E E+F
Sbjct: 213 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNIYIKNISTEASDDEFRELF 262
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S ++R+ E G SRG G++ + SA A+ L G D G+++ V + +
Sbjct: 263 EKYGDITSSSLARDQE-GKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKH 321
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NL V E LR F FG + SA+V+ D
Sbjct: 322 EREEELRKSYEAARLEKANKYQGVN-LYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRD 379
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 21/204 (10%)
Query: 77 DNVGGNEVDDDSSVEEPRSRA----RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132
D G +D+S P S A LYV L S + L E+F G V S+ V
Sbjct: 34 DTTVGTAGSEDASAPTPSSAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVC 93
Query: 133 RNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISP 192
R+ T S G Y+ S + A+ L+ + + GR R+ +S + + +
Sbjct: 94 RDAVTRRSLGYAYVNYNSTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---- 149
Query: 193 PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ +
Sbjct: 150 -----------NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYE 197
Query: 253 SD-AERDAALSLNGTDFRGRTIIV 275
+D A A +NG + + V
Sbjct: 198 TDEAAHQAIKHVNGMLLNEKKVYV 221
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V N D L EMF+ +G ++S +V ++ +G ++G G++ A+NA L
Sbjct: 193 VFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDL 252
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+ D+ GR + R + I+ + RN L+ ++ Y+ + LYV NL ++ E
Sbjct: 253 NMKDINGRILYVGRAQKKIERQAELRNRFELMK-AERANRYQGVN-LYVKNLDDSLDDER 310
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 311 LRKEFMPFGTITSAKVMSE--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIV 359
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S G Y+ A+ A+ ++
Sbjct: 13 LYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL ++ + + +
Sbjct: 73 NFDVIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F+++ + ++ +NG G+ + V + +
Sbjct: 118 TFSAFGDILSCKVVCDENG--SKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D L + F PFGT+ S +V E G S+G G++ S A
Sbjct: 290 NRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVMS--EGGRSKGFGFVCFSSPEEA 347
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G V + + V +
Sbjct: 348 TKAVTEMNGRIVSTKPLYVALA 369
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG++LS +V N E G SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYN-EHG-SRGFGFVHFETHEAAQKAINTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSRQKR-EAELGARALGFT-----NIYVKNLHANVDEQRLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + S +V+ D GQ +R FGF++F E A+ +NG + G+ + V
Sbjct: 210 LFSQFGNMQSVKVMRDSNGQ-SRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RAE 271
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S L EMF P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------HRDPGLRKSGMGNIF---------IKNLENSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG+++S++V+++ G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFV 170
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V EEA D +NGK+ G + S + +E ++R
Sbjct: 232 GFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL S + L E+F +G + S +V E+ S+G G++ S A A
Sbjct: 292 QGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVMT--ESSHSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 350 VTEMNGRIVGTKPLYVALA 368
>gi|354557963|ref|ZP_08977220.1| RNP-1 like RNA-binding protein [Desulfitobacterium metallireducens
DSM 15288]
gi|353549637|gb|EHC19078.1| RNP-1 like RNA-binding protein [Desulfitobacterium metallireducens
DSM 15288]
Length = 84
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVGNL W EDL + FG++G VVS+R++ DR+ +R FGF+ D A LN
Sbjct: 5 LYVGNLPWNTTTEDLTSFFGQYGEVVSSRIITDRETGRSRGFGFVEVEDDDAERMAQDLN 64
Query: 265 GTDFRGRTIIVRE 277
G DF GR + V E
Sbjct: 65 GKDFGGRPLTVNE 77
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + +L F +G V+S + + ETG SRG G++ + + A+ L
Sbjct: 5 LYVGNLPWNTTTEDLTSFFGQYGEVVSSRIITDRETGRSRGFGFVEV-EDDDAERMAQDL 63
Query: 162 DGSDVGGREMRV 173
+G D GGR + V
Sbjct: 64 NGKDFGGRPLTV 75
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNI---------------FVKNLDKSINNKVLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TASAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV 170
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + E+ +MF G V S + ++ E G S+G G++ A A+ AL
Sbjct: 215 VFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKD-EAGKSKGFGFINFEDAEGAHAAVTAL 273
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+E+ R + + + + + ++I Y+ LYV NL V +
Sbjct: 274 NGKEIDGKELYCGRAQKKAEREAELKQKFDEVRQ-ERIAKYQG-MNLYVKNLVDEVDDDQ 331
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
LR F GT+ SA+V+ D G+ ++ FGF+ +SS E A++ +NG G+ + V
Sbjct: 332 LRAEFAPHGTITSAKVMKDSAGK-SKGFGFVCYSSPEEATRAVTEMNGKMLLGKPMYV 388
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 81/194 (41%), Gaps = 28/194 (14%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK------ 155
LYV +L R ++L E+F G V S+ V R+ T S G Y+ S A
Sbjct: 26 LYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSALDAAAAERAI 85
Query: 156 ---NAIIALDGSDVG--GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
N + G + G + MR+ +S R+ F +++ NL
Sbjct: 86 EALNYTSVIPGKEGGEDSKPMRIMWS------HRDP---------AFRKSGVGNIFIKNL 130
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR 269
+ + L + F FGT++S +V D G ++ +GF+ + + A+ +NG
Sbjct: 131 DKDIDNKALHDTFTAFGTILSCKVATDLAG-NSKGYGFVHYEKEEAAQLAIEKVNGMLLE 189
Query: 270 GRTIIVREGVDRTE 283
G+ + V + RTE
Sbjct: 190 GKKVFVGPFLKRTE 203
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
D +E ++ + LYV NL D +L F P GT+ S +V ++ G S+G G++
Sbjct: 303 DEVRQERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKD-SAGKSKGFGFV 361
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFS 176
S A A+ ++G + G+ M V +
Sbjct: 362 CYSSPEEATRAVTEMNGKMLLGKPMYVALA 391
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + L EMF +G LSV+V + + G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ M R + ++ + R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 137 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETAEAANNAIKHV 195
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V ++ R+
Sbjct: 196 NGMLLNEKKVFVGHHIPKKERMSKFEEM----KANFT-----NIYVKNIDLDVTDDEFRD 246
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F + G + SA + D +G+ +R FGF+++ +A A +LN T+F G+ + V
Sbjct: 247 LFEKHGDITSASIARDDQGK-SRGFGFVNYIKHEAASVAVETLNDTEFHGQKLYV 300
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 89/207 (42%), Gaps = 17/207 (8%)
Query: 78 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
NVG + + + ++ LYV L S + L E+F G V S+ V R+ T
Sbjct: 25 NVGATQGEAPTPTTAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVT 84
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
S G Y+ S + A+ L+ + + G+ R+ +S + + +
Sbjct: 85 RRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQG--------- 135
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAE 256
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + +++A
Sbjct: 136 ------NVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDEHG-NSKGYGFVHYETAEAA 188
Query: 257 RDAALSLNGTDFRGRTIIVREGVDRTE 283
+A +NG + + V + + E
Sbjct: 189 NNAIKHVNGMLLNEKKVFVGHHIPKKE 215
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 4/144 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +YV N+ E ++F+ G + S ++R+ + G SRG G++ +A
Sbjct: 224 KANFTNIYVKNIDLDVTDDEFRDLFEKHGDITSASIARD-DQGKSRGFGFVNYIKHEAAS 282
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ L+ ++ G+++ V + + R + K Y+ + LY+ NL+
Sbjct: 283 VAVETLNDTEFHGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVN-LYIKNLNDD 341
Query: 214 VKPEDLRNHFGRFGTVVSARVLHD 237
V E LR+ F FGT+ SA+V+ D
Sbjct: 342 VDDEKLRDMFTPFGTITSAKVMRD 365
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG + G+ + V
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN-LYVKNLDDSINDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A+ T+ GR I+ +
Sbjct: 312 LRREFAPFGTITSAKVMMEDG--RSKGFGFVCFSAPEEATKAV----TEMNGRIIVTK 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|328875992|gb|EGG24356.1| RNA recognition motif-containing protein RRM [Dictyostelium
fasciculatum]
Length = 770
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 29/201 (14%)
Query: 70 EDEINGKDNVGGNEVDD-DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128
ED N + G++ DD +SS+E+ ++ ++V LP F SEL +F FG V+S
Sbjct: 62 EDSPNSSSDHYGDQGDDYESSIEKDQTN-----VFVKYLPNEFGDSELHNLFTQFGKVMS 116
Query: 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRN 185
+V +P+ G S G G++ S +K AI +DG + +++ R S + NS+
Sbjct: 117 AKVMVDPK-GNSYGYGFVRFSSPIESKLAIETMDGKQLMHKKLLCRLSYLYSNHNSKY-- 173
Query: 186 AEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
P +FV P L G LR+ F FG +V +V+ D+KG +++
Sbjct: 174 ------PSNNLFVKPLPATLTDG---------QLRDLFQGFGEIVECKVMVDKKG-NSKL 217
Query: 246 FGFISFSSDAERDAAL-SLNG 265
GF+ F ++A+ A+ ++NG
Sbjct: 218 AGFVRFDNEADATKAIQAMNG 238
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V +LP D L ++F +G + SV V + ETG ++G G++ + + A ++
Sbjct: 628 TNLFVFHLPSFVDDVYLYKLFSQYGPLQSVRVIMDKETGENKGYGFVKFQNRDDAVTSLN 687
Query: 160 ALDGSDVGGREMRVRF 175
++G VG + ++V+F
Sbjct: 688 QMNGMQVGQKYLKVKF 703
>gi|213401557|ref|XP_002171551.1| gar2 [Schizosaccharomyces japonicus yFS275]
gi|211999598|gb|EEB05258.1| gar2 [Schizosaccharomyces japonicus yFS275]
Length = 449
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 22/203 (10%)
Query: 83 EVDDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
+ DD+S ++P+ A+ C ++V L + D L + F+ +GTV++ V + ++
Sbjct: 184 KADDESEEQKPQKAAKSESGESCTVFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQS 243
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL-------- 189
G S+G GY+ S +AK A+ ++ GR + + S ++ N A
Sbjct: 244 GRSKGFGYVDFDSPEAAKAAVAVNGQKEIDGRMVNLDISTPRPAQNNNGFAQQRASNFGD 303
Query: 190 -ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
SPP +++GNLS+ +D+RN F G + S R+ D + FG+
Sbjct: 304 KQSPPSDT--------VFIGNLSFNATEDDVRNAFSSCGEIQSVRLPTDMNSGRPKGFGY 355
Query: 249 ISFSSDAERDAALSLNGTDFRGR 271
++F S + +NG GR
Sbjct: 356 VTFDSIDAAKQCVEMNGHFIAGR 378
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 182 RTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
R + E+ P+K ES ++VG LSW V E L F +GTVV+ARV+ D +
Sbjct: 183 RKADDESEEQKPQKAAKSESGESCTVFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQ 242
Query: 240 GQTTRVFGFISFSSDAERDAALSLNGT-DFRGRTI 273
++ FG++ F S AA+++NG + GR +
Sbjct: 243 SGRSKGFGYVDFDSPEAAKAAVAVNGQKEIDGRMV 277
>gi|24583873|ref|NP_723737.1| arrest, isoform B [Drosophila melanogaster]
gi|442627569|ref|NP_001260403.1| arrest, isoform G [Drosophila melanogaster]
gi|22946318|gb|AAN10810.1| arrest, isoform B [Drosophila melanogaster]
gi|375065944|gb|AFA28453.1| FI19388p1 [Drosophila melanogaster]
gi|440213733|gb|AGB92938.1| arrest, isoform G [Drosophila melanogaster]
Length = 810
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 325 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 372
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + ++A A AL + G ++
Sbjct: 373 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHPIQ 432
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 433 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 475
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 476 LRDQNGQ-SKGCAFVTF---ATKHAAIS 499
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 726 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 785
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 786 AMNGFQVGTKRLKVQLKKPKDSK 808
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 728 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 787
Query: 264 NG 265
NG
Sbjct: 788 NG 789
>gi|388854599|emb|CCF51756.1| uncharacterized protein [Ustilago hordei]
Length = 1235
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L+V N P +D S + F P+G + +V + R C Y+ + +SA AI
Sbjct: 861 CTLFVTNFPEEWDDSSIRSTFSPYGLIFNVRWPSKRFSSSRRFC-YVQFTTPSSASAAIE 919
Query: 160 ALDGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
AL+G +V GR + V S D + R + ++A E+ +L+V L + E+
Sbjct: 920 ALNGKEVAEGRTLNVALS-DPSRRKQRSDA----------NENAKELFVSGLPRNITDEE 968
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIV 275
L+ +F +G V R+L + +G R GF+ F + DA R A LN T +R +TI V
Sbjct: 969 LKTYFEAYGKVTGVRLLRNAEG-GLRGIGFVDFENALDATR-AMKELNSTKWRAKTISV 1025
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 71 DEINGKDNVGGNEVD---DDSSVEEPRSRAR--PCELYVCNLPRSFDISELLEMFKPFGT 125
+ +NGK+ G ++ D S + RS A EL+V LPR+ EL F+ +G
Sbjct: 919 EALNGKEVAEGRTLNVALSDPSRRKQRSDANENAKELFVSGLPRNITDEELKTYFEAYGK 978
Query: 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN 185
V V + RN E G+ RG G++ + A A+ L+ + + + V + +SR+ N
Sbjct: 979 VTGVRLLRNAEGGL-RGIGFVDFENALDATRAMKELNSTKWRAKTISVTLA---DSRSSN 1034
Query: 186 AE 187
++
Sbjct: 1035 SK 1036
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 92/184 (50%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E G S+G G++ + +A +I +
Sbjct: 92 VFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQD-ENGASKGYGFVHFETEEAANKSIEKV 150
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N E LR+
Sbjct: 151 NGMLLNGKKVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDFSDEMLRD 201
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++G + S +V++ G ++R FGF++F DA A L LNG + G+ + V
Sbjct: 202 MFEKYGRITSHKVMYKEDG-SSRGFGFVAFEDPDAAERACLELNGKELVEGKPLYVGRAQ 260
Query: 280 DRTE 283
+ E
Sbjct: 261 KKAE 264
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N F L +MF+ +G + S +V E G SRG G++ ++A+ A + L
Sbjct: 185 VYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYK-EDGSSRGFGFVAFEDPDAAERACLEL 243
Query: 162 DGSD-VGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + V G+ + V + R R E L S +++ Y+ + LYV NL +
Sbjct: 244 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDD 300
Query: 217 EDLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
E LR F FGT+ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 301 ERLRKEFAPFGTITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 351
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ + A+ A+ +
Sbjct: 4 LYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL A+ + + +
Sbjct: 64 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKAIDNKAMYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V +
Sbjct: 109 TFSAFGNILSCKVAQDENG-ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 7/176 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S EL ++F FG S + R+ E G S+G G++ + + A A+ AL
Sbjct: 220 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 278
Query: 162 DGSDVGGREMRVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +E V + + R T + K+ LYV NL +V + LR
Sbjct: 279 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 338
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
HF FGT+ S +V+ D G +R GF++FS+ E A+ T+ G+ I+ +
Sbjct: 339 EHFAPFGTITSCKVMRDPTG-VSRGSGFVAFSTPEEASRAI----TEMNGKMIVTK 389
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L E F G V+SV V R+ T S G GY+ + A A+ L
Sbjct: 41 LYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +RV +S+ S ++ +++ NL ++ + L
Sbjct: 101 NFMALNGRAIRVMYSVRDPSLRKSGVG---------------NIFIKNLDKSIDHKALHE 145
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D GQ ++ +GF+ + +D A + A LNG + + V
Sbjct: 146 TFSAFGPILSCKVAVDPSGQ-SKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYV 199
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E +++ LYV NL S +L E F PFGT+ S +V R+P TG+SRG G++
Sbjct: 308 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-TGVSRGSGFV 366
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A AI ++G + + + V + R +A S
Sbjct: 367 AFSTPEEASRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFS 411
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG++LS +V N E G SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYN-EHG-SRGFGFVHFETHEAAQKAINTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSRQKR-EAELGARALGFT-----NIYVKNLHANVDEQRLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + S +V+ D GQ +R FGF++F E A+ +NG + G+ + V
Sbjct: 210 LFSQFGNMQSVKVMRDSNGQ-SRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RAE 271
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S L EMF P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTESMLYEMFSPIGNILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------HRDPGLRKSGMGNIF---------IKNLENSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG+++S++V+++ G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGSILSSKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFV 170
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V EEA D +NGK+ G + S + +E ++R
Sbjct: 232 GFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQMKQERQNRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL S + L E+F +G + S +V E+ S+G G++ S A A
Sbjct: 292 QGVNLYVKNLDDSINDERLKEVFSTYGVITSAKVM--TESSHSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRV 173
+ ++G VG + + V
Sbjct: 350 VTEMNGRIVGTKPLYV 365
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 14/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ +P +G S+G G++ S +A+ AI L
Sbjct: 115 IFIKNLDKAIDHKALHDTFSVFGNILSCKVATDP-SGQSKGYGFVQFDSEEAAQKAIEKL 173
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V R E + K F + ++V NLS EDL
Sbjct: 174 NGMLLNDKQVYV------GPFLRKQERDTATDKTRF-----NNVFVKNLSETTAEEDLNK 222
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG FGT+ S V+ D G+ +R FGF++F + D AA +LNG F + V +
Sbjct: 223 AFGEFGTITSVVVMRDGDGK-SRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQK 281
Query: 281 RTE 283
+ E
Sbjct: 282 KYE 284
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S ++ E+F PFGT+ S +V R+P GISRG G++
Sbjct: 294 EQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDP-NGISRGSGFV 352
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFS 176
+ A A++ ++G V + + V +
Sbjct: 353 AFSTPEEASRALLEMNGKMVASKPLYVALA 382
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 12/186 (6%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ R ++V NL + +L + F FGT+ SV V R+ + G SR G++ + + A
Sbjct: 200 KTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGD-GKSRCFGFVNFENADDAA 258
Query: 156 NAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
A AL+G +E V ++ ++ + R +++ K LY+ NL
Sbjct: 259 KAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKF----QGANLYIKNL 314
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD-AALSLNGTDFR 269
++ E ++ F FGT+ S +V+ D G +R GF++FS+ E A L +NG
Sbjct: 315 DDSIGDEKIKELFSPFGTITSCKVMRDPNG-ISRGSGFVAFSTPEEASRALLEMNGKMVA 373
Query: 270 GRTIIV 275
+ + V
Sbjct: 374 SKPLYV 379
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L V L + F + G VVS RV D + + +G++++S+ + AL L
Sbjct: 27 LYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEVL 86
Query: 264 NGTDFRGRTIIV 275
N T G I V
Sbjct: 87 NFTPVNGSPIRV 98
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG VLS +V+ + E G S+G G++ + +A+NAI +
Sbjct: 136 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGNSKGYGFVHYETAEAAENAIKNV 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R ++ I K F LY+ N+ V E+
Sbjct: 195 NGMLLNDKKVYVGHHISRKER----QSKIDEMKAQFT-----NLYIKNIDPEVTDEEFEA 245
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F G V S+ + D +G+ +R FGF+++ + E A+ +LN DF GR + V
Sbjct: 246 LFREQGNVTSSVIQRDEEGR-SRGFGFVNYETHEEAQKAVDNLNDKDFHGRKLFVSRAQK 304
Query: 281 RTE 283
+ E
Sbjct: 305 KAE 307
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 7/170 (4%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A+ LY+ N+ E +F+ G V S + R+ E G SRG G++ + A+
Sbjct: 223 KAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRD-EEGRSRGFGFVNYETHEEAQ 281
Query: 156 NAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ L+ D GR++ R + + R A + +K+ Y+ + LYV NL
Sbjct: 282 KAVDNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQ-ARLEKLSKYQGLN-LYVKNLDD 339
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
V E LR F FGT+ SA+V+ D KG ++ FGF+ +SS E A++
Sbjct: 340 DVDDEKLRAEFEPFGTITSAKVMRDDKG-VSKGFGFVCYSSPEEASKAVA 388
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 48 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + +++ NL + + L +
Sbjct: 108 NYSLIKNRPCRIMWSQRDPALRKTGQG---------------NIFIKNLDEQIDNKALHD 152
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG V+S +V D G ++ +GF+ + +++A +A ++NG + + V +
Sbjct: 153 TFAAFGNVLSCKVATDEHG-NSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHIS 211
Query: 281 RTE 283
R E
Sbjct: 212 RKE 214
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LYV NL D +L F+PFGT+ S +V R+ + G+S+G G++ S
Sbjct: 322 EKLSKYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRD-DKGVSKGFGFVCYSSP 380
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
A A+ ++ +G + + V + R + E+ I+ +I
Sbjct: 381 EEASKAVAEMNNKMIGSKPLYVSHAQRREVRRQQLESQIAQRNQIM 426
>gi|6456838|emb|CAA04179.2| Sex-lethal orthologous protein [Megaselia scalaris]
Length = 307
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 40/234 (17%)
Query: 29 FTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS 88
F+S P+ I Q+ + S + +++ G SV + + + G +N G N
Sbjct: 16 FSSYPSTIGRQHSQQSQRYYQNNNCGLGSVGNMANSTNSLNS----GTNNSGTN------ 65
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
L V LP+ EL +F+ G + + + R+ +TG S G G++
Sbjct: 66 -------------LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDF 112
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
GS A AI L+G V + ++V F+ + R+ LYV
Sbjct: 113 GSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTN-----------------LYVT 155
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
NLS ++ E L FG++G +V +L D+ T R FI F+ E A+S
Sbjct: 156 NLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 209
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R LYV NL RS +L +F +G ++ + R+ TG RG ++ A+ A
Sbjct: 148 RDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEA 207
Query: 158 IIALD 162
I AL+
Sbjct: 208 ISALN 212
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 14/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G SRG G++ +AK AI A+
Sbjct: 132 IFIKNLHPDIDNKALHDTFSVFGNILSCKIATD-EAGNSRGFGFVHFEDDEAAKEAIDAI 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K F +YV N+ E+
Sbjct: 191 NGMLLNGQEVYVAQHVSKKDR----QSKLDEAKANFT-----NVYVKNIHPDTGDEEFEE 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREGV 279
F + G + SA + D +G+ R FGF+++ +DA + A LN TDF+G+T+ V
Sbjct: 242 FFTKVGPITSAHLEKDNEGK-LRGFGFVNYENHNDAAK-AVEELNETDFKGQTLHVGRAQ 299
Query: 280 DRTE 283
+ E
Sbjct: 300 KKHE 303
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 17/214 (7%)
Query: 71 DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130
+++N +D N + E + LYV L S + L ++F P G+V S+
Sbjct: 13 EQLNIQDEPQQNVAPASNEPESQKVETSSASLYVGELDPSVSEALLYDIFSPIGSVSSIR 72
Query: 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 190
V R+ T S G Y+ + K AI L+ + + G R+ +S S + I
Sbjct: 73 VCRDAITKTSLGYAYVNFNDHEAGKTAIEKLNYAPIKGVPCRIMWSQRDPSMRKKGSGNI 132
Query: 191 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
++ NL + + L + F FG ++S ++ D G +R FGF+
Sbjct: 133 ---------------FIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAG-NSRGFGFVH 176
Query: 251 FSSD-AERDAALSLNGTDFRGRTIIVREGVDRTE 283
F D A ++A ++NG G+ + V + V + +
Sbjct: 177 FEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKD 210
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 17/220 (7%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEV---------DDDSSVEEPRSRARPCELYV 104
GF V DE A D ING + G EV D S ++E ++A +YV
Sbjct: 171 GFGFVHFEDDEAAKEAIDAINGM-LLNGQEVYVAQHVSKKDRQSKLDE--AKANFTNVYV 227
Query: 105 CNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164
N+ E E F G + S + ++ E G RG G++ + N A A+ L+ +
Sbjct: 228 KNIHPDTGDEEFEEFFTKVGPITSAHLEKDNE-GKLRGFGFVNYENHNDAAKAVEELNET 286
Query: 165 DVGGREMRVRFSIDMNSRTRNAEALISP--PKKIFVYESPHKLYVGNLSWAVKPEDLRNH 222
D G+ + V + + R + + +K+ Y+ + L+V NL + + L
Sbjct: 287 DFKGQTLHVGRAQKKHERLQELKKQYEAFRLEKLEKYQGVN-LFVKNLDDTIDDQKLEEE 345
Query: 223 FGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
F +GT+ S +V+ G+ ++ FGF+ FS+ E A++
Sbjct: 346 FAPYGTITSVKVMRSENGK-SKGFGFVCFSTPEEATKAIT 384
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E + + L+V NL + D +L E F P+GT+ SV+V R+ E G S+G G++ +
Sbjct: 318 EKLEKYQGVNLFVKNLDDTIDDQKLEEEFAPYGTITSVKVMRS-ENGKSKGFGFVCFSTP 376
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 377 EEATKAITEKNQQIVAGKPLYV 398
>gi|121596409|ref|YP_988305.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608489|gb|ABM44229.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 149
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ +DL F +FG V SA+V+ +R ++ FGF+ SDAE A++
Sbjct: 3 NKLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQSLGGRSIVVNE 78
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQSLGGRSIVVNEARPMEAR 85
>gi|336468898|gb|EGO57061.1| hypothetical protein NEUTE1DRAFT_66048 [Neurospora tetrasperma FGSC
2508]
gi|350288804|gb|EGZ70029.1| RNA splicing factor Pad-1 [Neurospora tetrasperma FGSC 2509]
Length = 571
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 8/182 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL E F+ G V ++ ++ + S+G GY+ + +S + A + L
Sbjct: 185 VFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNEDSVQ-AALQL 243
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + V+ + + N + R E P I H+LYVGN+ +++ +DL+
Sbjct: 244 TGQKLLGIPVIVQLTEAEKNRQVRTTETSGHHPNSIPF----HRLYVGNIHFSITEQDLQ 299
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ D G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 300 NVFEPFGELEFVQLQKDDNGR-SRGYGFVQFRDAGQAREALEKMNGFDLAGRPIRVGLGN 358
Query: 280 DR 281
D+
Sbjct: 359 DK 360
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGMGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG ++S V+ D G ++ +GF+ F + +A A +NG GR + V +
Sbjct: 118 TVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG + G+ + V
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A+ T+ GR I+ +
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAV----TEMNGRIIVTK 363
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|126290015|ref|XP_001367952.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like
[Monodelphis domestica]
Length = 486
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 20/188 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 189 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 248
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 249 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 292
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275
DL HF +FGTV A ++ D++ R FGF+ F S D A + +G + V
Sbjct: 293 EGDLVEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEV 352
Query: 276 REGVDRTE 283
++ V + +
Sbjct: 353 KKAVPKED 360
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 190 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 249
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G T+ ++ V R +S
Sbjct: 250 SPHAVDGNTVELKRAVSREDS 270
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VGGNEVDDDSSVEE-----PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
V GN V+ +V P + A+ +L+V L +L+E F FGTV E+
Sbjct: 254 VDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLVEHFSQFGTVEKAEIIA 313
Query: 134 NPETGISRGCGYLTMGSINSAKNAII 159
+ ++G RG G++ S ++A A +
Sbjct: 314 DKQSGKKRGFGFVYFQSHDAADKAAV 339
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNI---------------FVKNLDKSINNKVLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG ++S +V+ D G ++ +GF+ F + +A A +NGT R + V
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|333917516|ref|YP_004491248.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
gi|333747716|gb|AEF92893.1| RNP-1 like RNA-binding protein [Delftia sp. Cs1-4]
Length = 179
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ DL F +FG V SARV+ +R ++ FGF+ SDAE AA+
Sbjct: 3 NKLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQ 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSLVVNE 78
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP ++L + F FG V S V +TG S+G G++ MGS A+ A+
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSLVVNEARPMEPR 85
>gi|160901478|ref|YP_001567060.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
gi|160367062|gb|ABX38675.1| RNP-1 like RNA-binding protein [Delftia acidovorans SPH-1]
Length = 176
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ DL F +FG V SARV+ +R ++ FGF+ SDAE AA+
Sbjct: 3 NKLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQ 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSLVVNE 78
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP ++L + F FG V S V +TG S+G G++ MGS A+ A+
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSLVVNEARPMEPR 85
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D L + F FG VLS +V+ + G S+G G++ + SA+NAI
Sbjct: 93 ANVFIKNLDISIDNKTLHDTFAAFGFVLSSKVAVD-SIGQSKGYGFVQFDNEESAQNAIK 151
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V ++ R + + PK V YV N S EDL
Sbjct: 152 ELNGMLINDKKVYVGLFVNRQERAQ----VDGSPKFTNV-------YVKNFSETYTDEDL 200
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
F +GT+ SA V+ D G+ +R FGF++F S D+ A LNGT
Sbjct: 201 EQLFSTYGTITSAVVMKDTDGK-SRCFGFVNFESPDSAVAAVERLNGT 247
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L R+ D ++L ++F G + S+ V R+ ET S G Y+ + A NA+
Sbjct: 6 ASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRD-ETNRSLGYAYVNFVNPQDAANAME 64
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ + + G+ +RV FS S ++ A +++ NL ++ + L
Sbjct: 65 HLNFTPLNGKSIRVMFSNRDPSIRKSGYA---------------NVFIKNLDISIDNKTL 109
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
+ F FG V+S++V D GQ ++ +GF+ F + ++ ++A LNG + + V
Sbjct: 110 HDTFAAFGFVLSSKVAVDSIGQ-SKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLF 168
Query: 279 VDRTE 283
V+R E
Sbjct: 169 VNRQE 173
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N ++ +L ++F +GT+ S V ++ + G SR G++ S +SA A+ L
Sbjct: 186 VYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTD-GKSRCFGFVNFESPDSAVAAVERL 244
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPP---KKIFVYESPH--KLYVGNLSWAVKP 216
+G+ V ++ + R EA + ++I YE H LYV NL + +
Sbjct: 245 NGTTVNDDKV---LYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNIND 301
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ L+ F FGT+ S +V+ + G+ ++ +GF++FS+ + AL +NG R + V
Sbjct: 302 DKLKELFSEFGTITSCKVMLEPNGR-SKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYV 360
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 7/176 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S EL ++F FG S + R+ E G S+G G++ + + A A+ AL
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 162 DGSDVGGREMRVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +E V + + R T + K+ LYV NL +V + LR
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
HF FGT+ S +V+ D G +R GF++FS+ E A+ T+ G+ I+ +
Sbjct: 345 EHFAPFGTITSCKVMRDPSG-VSRGSGFVAFSTPEEATRAI----TEMNGKMIVTK 395
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L E F G V+SV V R+ T S G GY+ + A A+ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +RV +S+ S ++ +++ NL ++ + L
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVG---------------NIFIKNLDKSIDHKALHE 151
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F FG ++S +V D GQ ++ +GF+ + +D A+ LNG + + V
Sbjct: 152 TFSAFGPILSCKVAVDPSGQ-SKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E +++ LYV NL S +L E F PFGT+ S +V R+P +G+SRG G++
Sbjct: 314 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFV 372
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A AI ++G + + + V + R +A S
Sbjct: 373 AFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFS 417
>gi|89266850|emb|CAJ83915.1| novel protein containing RNA recognition motifs. (a.k.a. RRM, RBD,
or RNP domain) [Xenopus (Silurana) tropicalis]
Length = 406
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 54/250 (21%)
Query: 59 LAVVDEEA----VVVEDEINGKDNVGGNEVDDDSSVEEPRSRA--RPCE-------LYVC 105
LA DEE V+ ++++ K N +DDD V +PR R R E ++V
Sbjct: 117 LANADEEETRKNVISKEKLKSKKN---QSLDDDGVVVQPRKRKVNRAEERIKNKRTVFVG 173
Query: 106 NLPRSFDISELLEMFKPFGTVLSVE---VSRNPETGISRGCG---------------YLT 147
NLP + L +FK FG + S+ V+R E +SR Y+
Sbjct: 174 NLPADYTKQMLKSLFKEFGHIESMRFRSVAR-AEANLSRKVAAIQRKVHPKRKNINAYIV 232
Query: 148 MGSINSAKNAIIALDGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+SA A+ +G++VG G +RV + +S +++ +
Sbjct: 233 FKDESSASQAL-KRNGAEVGSGFHIRVDIASKRSS-----------------HDNKRSAF 274
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+GNL + ++ E +R+HF G V R++ D+K + FG++ F S AL LN +
Sbjct: 275 IGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGIGKGFGYVLFESADAVQLALKLNNS 334
Query: 267 DFRGRTIIVR 276
+ GR I V+
Sbjct: 335 ELSGRKIRVK 344
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
++ NLP + + + F G V V + R+ +TGI +G GY+ S ++ + A+ L+
Sbjct: 274 FIGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGIGKGFGYVLFESADAVQLAL-KLN 332
Query: 163 GSDVGGREMRVRFSI 177
S++ GR++RV+ S+
Sbjct: 333 NSELSGRKIRVKRSL 347
>gi|313230196|emb|CBY07900.1| unnamed protein product [Oikopleura dioica]
Length = 423
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 92/193 (47%), Gaps = 26/193 (13%)
Query: 93 PRSRARP--------CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
P SR P L V LP+++ +L E+F G + + ++ R+ ET +S G G
Sbjct: 105 PHSRMSPFTGGQESKTNLIVNYLPQNYTQDQLRELFSSIGDIETCKLCRHRETKMSLGYG 164
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
++ + AK A+ + +G + + ++V ++ ++ +N
Sbjct: 165 FVNFRRSSDAKRAVDSFNGLSIQTKSIKVSYARPSSNIIKNTN----------------- 207
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYV + ++ +++N FGR G ++SAR+LHD+ ++ FI + + E + A+ +
Sbjct: 208 LYVAGIPRSITLAEIKNLFGRLGKIISARILHDKDTGLSKGVAFIRYDTRVEAERAVKHM 267
Query: 264 NGTDFRGRTIIVR 276
+ ++ G + V+
Sbjct: 268 HHFNYEGEVLTVK 280
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +PRS ++E+ +F G ++S + + +TG+S+G ++ + A+ A+ +
Sbjct: 208 LYVAGIPRSITLAEIKNLFGRLGKIISARILHDKDTGLSKGVAFIRYDTRVEAERAVKHM 267
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ G + V+F+ K + P KLY+ N+ +
Sbjct: 268 HHFNYEGEVLTVKFA------------------KRQSLKKPQKLYLQNMEF 300
>gi|356508060|ref|XP_003522779.1| PREDICTED: 30 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 297
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 15/191 (7%)
Query: 90 VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
EE SR R L N+P + ++ +F+ G VL VE+S + +RG ++ MG
Sbjct: 64 AEEEFSRTR---LLAQNVPWTSTPEDIRSLFEKHGKVLQVELSMY-KKNRNRGLAFVEMG 119
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
S A A+ L+ + GR ++V ++ +T PP K V L+V N
Sbjct: 120 SPEEALEALNNLESYEFEGRVIKVNYARPKKEKT-------PPPVKPKVVT--FNLFVAN 170
Query: 210 LSWAVKPEDLRNHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTD 267
LS+ +DL+ F G VVSA V++ + +GF+S+ S E +AAL+ G
Sbjct: 171 LSYEASAKDLKEFFDSGTGKVVSAEVVYRDNPRRPSGYGFVSYKSKKEAEAALAEFQGKI 230
Query: 268 FRGRTIIVREG 278
F GR I V G
Sbjct: 231 FMGRPIRVDRG 241
>gi|85076094|ref|XP_955878.1| hypothetical protein NCU03491 [Neurospora crassa OR74A]
gi|28916904|gb|EAA26642.1| hypothetical protein NCU03491 [Neurospora crassa OR74A]
Length = 576
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 8/182 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL E F+ G V ++ ++ + S+G GY+ + +S + A + L
Sbjct: 185 VFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNEDSVQ-AALQL 243
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + V+ + + N + R E P I H+LYVGN+ +++ +DL+
Sbjct: 244 TGQKLLGIPVIVQLTEAEKNRQVRTTETSGHHPNSIPF----HRLYVGNIHFSITEQDLQ 299
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ D G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 300 NVFEPFGELEFVQLQKDDNGR-SRGYGFVQFRDAGQAREALEKMNGFDLAGRPIRVGLGN 358
Query: 280 DR 281
D+
Sbjct: 359 DK 360
>gi|169616941|ref|XP_001801885.1| hypothetical protein SNOG_11646 [Phaeosphaeria nodorum SN15]
gi|160703294|gb|EAT80690.2| hypothetical protein SNOG_11646 [Phaeosphaeria nodorum SN15]
Length = 1254
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 21/193 (10%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV N P D + L +F PFG V+ V R C Y+ ++A+
Sbjct: 887 RGQSTTLYVTNYPAHADEAYLRNLFAPFGEVIGVRFPSLKFDTHRRFC-YV---QFDNAE 942
Query: 156 NAIIA--LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
NA+ A LDG+DV ++ + S + R E+ I+ ++++V+ +L++
Sbjct: 943 NAVAATQLDGTDVESLKLIAKISDPKAKKKR--ESAITEGREVYVW---------HLNFK 991
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQ-TTRVFGFISFSSDAERDAALS-LNGTDFRGR 271
VK ++ + F RFGT+ R+ KG R + F++F + DAA++ +NG +F G
Sbjct: 992 VKEREINDAFSRFGTI--ERIKLPLKGHGNNRGYCFVNFKTKESADAAVAEMNGKNFWGL 1049
Query: 272 TIIVREGVDRTES 284
+ V VDR ES
Sbjct: 1050 DLHVEIAVDRAES 1062
>gi|4530579|gb|AAD22102.1| Pad-1 [Neurospora crassa]
Length = 575
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 8/182 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL E F+ G V ++ ++ + S+G GY+ + +S + A + L
Sbjct: 184 VFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNEDSVQ-AALQL 242
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + V+ + + N + R E P I H+LYVGN+ +++ +DL+
Sbjct: 243 TGQKLLGIPVIVQLTEAEKNRQVRTTETSGHHPNSIPF----HRLYVGNIHFSITEQDLQ 298
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ D G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 299 NVFEPFGELEFVQLQKDDNGR-SRGYGFVQFRDAGQAREALEKMNGFDLAGRPIRVGLGN 357
Query: 280 DR 281
D+
Sbjct: 358 DK 359
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 5/166 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +GT LSV+V + +G S+G G+++ S +AKNA+ +
Sbjct: 385 VYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTD-SSGKSKGFGFVSFASHEAAKNAVEEM 443
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G D+ G+ + V R + + + ++ F KLY+ NL + E LR
Sbjct: 444 NGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLR 503
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F FG++ +V+ + ++ FG I FSS E A++ +NG
Sbjct: 504 KEFASFGSISRVKVMQEEG--RSKGFGLICFSSHEEAIKAMTEMNG 547
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L + F G VLS+ + R+ T S G Y+ + A
Sbjct: 198 AKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADA 257
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 258 QKALDTMNFDVIKGKSIRLMWS------QRDAYLRKSGIGNVFIK---------NLDKSI 302
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NGT + +
Sbjct: 303 DNKTLYEHFSTFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRV 360
Query: 274 IV 275
V
Sbjct: 361 FV 362
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 18/136 (13%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG------------NEVDDDSSVEEPRS----RA 97
GF V E A +E+NGKD G + + E+ R R
Sbjct: 424 GFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRC 483
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +LY+ NL + D +L + F FG++ V+V + E G S+G G + S A A
Sbjct: 484 RGVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVMQ--EEGRSKGFGLICFSSHEEAIKA 541
Query: 158 IIALDGSDVGGREMRV 173
+ ++G +G + + +
Sbjct: 542 MTEMNGRILGSKPLNI 557
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG + G+ + V
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A+ T+ GR I+ +
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAV----TEMNGRIIVTK 363
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|222112647|ref|YP_002554911.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732091|gb|ACM34911.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 155
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ +DL F +FG V SA+V+ +R ++ FGF+ SDAE A++
Sbjct: 3 NKLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+I+V E
Sbjct: 63 GMNGQSLGGRSIVVNE 78
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQSLGGRSIVVNEARPMEAR 85
>gi|18376336|emb|CAD21082.1| RNA splicing factor Pad-1 [Neurospora crassa]
Length = 571
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 8/182 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL E F+ G V ++ ++ + S+G GY+ + +S + A + L
Sbjct: 185 VFVQQLAARLRTRELKEFFEKVGPVAEAQIVKDRVSNRSKGVGYVEFKNEDSVQ-AALQL 243
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
G + G + V+ + + N + R E P I H+LYVGN+ +++ +DL+
Sbjct: 244 TGQKLLGIPVIVQLTEAEKNRQVRTTETSGHHPNSIPF----HRLYVGNIHFSITEQDLQ 299
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGV 279
N F FG + ++ D G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 300 NVFEPFGELEFVQLQKDDNGR-SRGYGFVQFRDAGQAREALEKMNGFDLAGRPIRVGLGN 358
Query: 280 DR 281
D+
Sbjct: 359 DK 360
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V+ + E G SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETHEAAQQAINTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARALEFT-----NIYVKNLPVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F E + A + +NG + GR +
Sbjct: 210 LFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RME 271
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
>gi|452848411|gb|EME50343.1| hypothetical protein DOTSEDRAFT_69017 [Dothistroma septosporum
NZE10]
Length = 516
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 6/178 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL + D L F+ FG + +V V + ++G S+G GY+ S + A A+ A
Sbjct: 255 LFVGNLSWNVDEEWLTREFEEFGAIKAVRVITDRDSGRSKGYGYVEFESADDAAKALEAR 314
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHK----LYVGNLSWAVKP 216
G + RE+RV R + Y ++P + L+VGN+S+
Sbjct: 315 HGYTLDNRELRVDLGTPRAQRNDGQTPQQRSNDRQKQYGDTPSQPSATLFVGNISFDATQ 374
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ + F +G++ + R+ DR+ + FG++ FSS E +A+ +L G D GR I
Sbjct: 375 DMVTEVFQEYGSINAVRLPTDRETGAPKGFGYVEFSSIEEAKSAMENLTGVDIAGRPI 432
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V N+ SFD ++ + E+F+ +G++ +V + + ETG +G GY+ SI AK+A+
Sbjct: 363 LFVGNI--SFDATQDMVTEVFQEYGSINAVRLPTDRETGAPKGFGYVEFSSIEEAKSAME 420
Query: 160 ALDGSDVGGREMRVRFSI 177
L G D+ GR +R+ +S
Sbjct: 421 NLTGVDIAGRPIRLDYST 438
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 181 SRTRNAEALISPPKKIFVYESPH---KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
S+ R AEA K E P L+VGNLSW V E L F FG + + RV+ D
Sbjct: 228 SKKRKAEAEPEETSKKTKTEDPAATGNLFVGNLSWNVDEEWLTREFEEFGAIKAVRVITD 287
Query: 238 RKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVRE 277
R ++ +G++ F S DAA +L G T+ RE
Sbjct: 288 RDSGRSKGYGYVEFES--ADDAAKALEAR--HGYTLDNRE 323
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG++LS +V+ + +G S+G G++ + +A AI L
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAIEKL 177
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R +E K F + ++V NL+ EDL+N
Sbjct: 178 NGMLLNDKQVFVGPFLRKQERESVSE------KTKF-----NNVFVKNLAETTSEEDLKN 226
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTIIVREGV 279
FG FG + S V+ D +G+ ++ FGF++F + DA R +LNG G+ V +
Sbjct: 227 MFGEFGPITSVVVMRDGEGK-SKCFGFVNFENADDAARSVE-ALNGKKVDGKEWYVGKAQ 284
Query: 280 DRTE 283
++E
Sbjct: 285 KKSE 288
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + +L MF FG + SV V R+ E G S+ G++ + + A ++ AL
Sbjct: 210 VFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGE-GKSKCFGFVNFENADDAARSVEAL 268
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G V G+E V + ++ ++R +++ K Y+ + LYV NL ++
Sbjct: 269 NGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADK---YQGAN-LYVKNLDDSIDD 324
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+ L+ F FGT+ S +V+ D G +R GF++FSS E AL+ + GR I+ +
Sbjct: 325 DKLKELFTGFGTITSCKVMRDPNG-ISRGSGFVAFSSPEEAARALA----EMNGRMIVSK 379
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ SV+E + + LYV NL S D +L E+F FGT+ S +V R+P GISRG G++
Sbjct: 298 EQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDP-NGISRGSGFV 356
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++G + + + V + R +A S
Sbjct: 357 AFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFS 401
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L V L + F + G VVS RV D + + +G++++S+ + AL L
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVL 90
Query: 264 NGTDFRGRTIIV 275
N T G I V
Sbjct: 91 NFTPLNGNPIRV 102
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ +P +G S+G G++ S +A+ AI L
Sbjct: 115 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDP-SGQSKGYGFVQFDSEEAAQKAIEKL 173
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V R E + K F + ++V NLS EDL
Sbjct: 174 NGMLLNDKQVYV------GPFLRKQERDTATDKMRF-----NNVFVKNLSETTTEEDLNK 222
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTIIVREGV 279
FG FGT+ S V+ D G+ ++ FGF++F + DA + A +LNG + V +
Sbjct: 223 TFGEFGTITSIVVMRDGDGK-SKCFGFVNFENAEDAAK-AVEALNGKKIDDKEWFVGKAQ 280
Query: 280 DRTE 283
+ E
Sbjct: 281 KKYE 284
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + +L + F FGT+ S+ V R+ + G S+ G++ + A A+ AL
Sbjct: 206 VFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGD-GKSKCFGFVNFENAEDAAKAVEAL 264
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + +E V ++ ++ + R +++ K LY+ NL ++
Sbjct: 265 NGKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKF----QGANLYIKNLDDSIGD 320
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD-AALSLNG 265
E L+ F FGT+ S +V+ D G +R GF++FS+ E A L +NG
Sbjct: 321 EKLKELFSPFGTITSCKVMRDPNG-ISRGSGFVAFSTPEEASRALLEMNG 369
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S +L E+F PFGT+ S +V R+P GISRG G++
Sbjct: 294 EQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDP-NGISRGSGFV 352
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A++ ++G V + + V + R +A S
Sbjct: 353 AFSTPEEASRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFS 397
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L +V L + F + G VVS RV D + + +G++++S+ + AL L
Sbjct: 27 LYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALEML 86
Query: 264 NGTDFRGRTIIV 275
N T G I V
Sbjct: 87 NFTPLNGSPIRV 98
>gi|52345686|ref|NP_001004890.1| RNA binding motif protein 34 [Xenopus (Silurana) tropicalis]
gi|49523226|gb|AAH75294.1| MGC88935 protein [Xenopus (Silurana) tropicalis]
Length = 412
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 54/250 (21%)
Query: 59 LAVVDEEA----VVVEDEINGKDNVGGNEVDDDSSVEEPRSRA--RPCE-------LYVC 105
LA DEE V+ ++++ K N +DDD V +PR R R E ++V
Sbjct: 117 LANADEEETRKNVISKEKLKSKKN---QSLDDDGVVVQPRKRKVNRAEERIKNKRTVFVG 173
Query: 106 NLPRSFDISELLEMFKPFGTVLSVE---VSRNPETGISRGCG---------------YLT 147
NLP + L +FK FG + S+ V+R E +SR Y+
Sbjct: 174 NLPADYTKQMLKSLFKEFGHIESMRFRSVAR-AEANLSRKVAAIQRKVHPKRKNINAYIV 232
Query: 148 MGSINSAKNAIIALDGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+SA A+ +G++VG G +RV + +S +++ +
Sbjct: 233 FKDESSASQAL-KRNGAEVGSGFHIRVDIASKRSS-----------------HDNKRSAF 274
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+GNL + ++ E +R+HF G V R++ D+K + FG++ F S AL LN +
Sbjct: 275 IGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGIGKGFGYVLFESADAVQLALKLNNS 334
Query: 267 DFRGRTIIVR 276
+ GR I V+
Sbjct: 335 ELSGRKIRVK 344
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
++ NLP + + + F G V V + R+ +TGI +G GY+ S ++ + A+ L+
Sbjct: 274 FIGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGIGKGFGYVLFESADAVQLAL-KLN 332
Query: 163 GSDVGGREMRVRFSI 177
S++ GR++RV+ S+
Sbjct: 333 NSELSGRKIRVKRSL 347
>gi|406601704|emb|CCH46665.1| putative RNA-binding protein [Wickerhamomyces ciferrii]
Length = 479
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 33/184 (17%)
Query: 100 CELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
++++ L +D SE L E F FG V+ + R TG SRG G+LT S
Sbjct: 128 AKMFIGGL--DWDTSEERLKEYFSKFGEVIDHTIMRESSTGRSRGFGFLTFAEPRSVDEV 185
Query: 158 IIA---LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSW 212
+ LDG +I P + I E K++VG ++
Sbjct: 186 VKTEHVLDGK------------------------VIDPKRAIPRDEQDKTGKIFVGGIAP 221
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT 272
V+P++ N FG+FGT++ A+++ D+ +R FGF++F + D DF GR
Sbjct: 222 EVRPKEFENFFGKFGTIIDAQLMLDKDTGRSRGFGFVTFDAPDAVDRVCQGRYLDFNGRQ 281
Query: 273 IIVR 276
I V+
Sbjct: 282 IEVK 285
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K+ + K+++G L W E L+ +F +FG V+ ++ + +R FGF++F+
Sbjct: 120 KVDLSRDAAKMFIGGLDWDTSEERLKEYFSKFGEVIDHTIMRESSTGRSRGFGFLTFAEP 179
Query: 255 AERDAALS----LNGTDFRGRTIIVREGVDRT 282
D + L+G + I R+ D+T
Sbjct: 180 RSVDEVVKTEHVLDGKVIDPKRAIPRDEQDKT 211
>gi|242069255|ref|XP_002449904.1| hypothetical protein SORBIDRAFT_05g025410 [Sorghum bicolor]
gi|241935747|gb|EES08892.1| hypothetical protein SORBIDRAFT_05g025410 [Sorghum bicolor]
Length = 450
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 15/194 (7%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A +L++ + + LL+ FK +G V V R+ TG SRG G++ AK+
Sbjct: 3 ADAMKLFIGGISWDTNEDHLLKYFKKYGEVEEAIVMRDRATGRSRGFGFIMFADPAVAKH 62
Query: 157 AIIALDGSDVGGREMRVRFSI------DMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
I ++ + GR + + +I +N+ +A L P + K++VG L
Sbjct: 63 VI--MEKHMIDGRMVEAKKAIARDDHHSLNNIHGSAHGLQRPKHR-------KKIFVGGL 113
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRG 270
+ V ED+ HF +FGT++ V++D Q R FGFI++ S+ AL +G
Sbjct: 114 ASNVTKEDVIKHFKQFGTIIDVVVVYDHHTQRPRGFGFITYDSEDAVHRALIKTFQKLKG 173
Query: 271 RTIIVREGVDRTES 284
+ + V+ + + S
Sbjct: 174 KMVEVKRAIRKEPS 187
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+V+ + + D+ + +N+ G+ ++ P+ R + ++V L + ++++ F
Sbjct: 74 MVEAKKAIARDDHHSLNNIHGSA----HGLQRPKHRKK---IFVGGLASNVTKEDVIKHF 126
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
K FGT++ V V + T RG G++T S ++ A+I
Sbjct: 127 KQFGTIIDVVVVYDHHTQRPRGFGFITYDSEDAVHRALI 165
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHV 206
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V E+ R
Sbjct: 207 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NIYVKNVEQDVTDEEFRG 257
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F ++G + SA + D + +R FGF++FS AA+ +LN + +G+ + V
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYV 312
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + E +F+ +G + S +SR+ ETG SRG G
Sbjct: 226 DRQSKFEE--MKANFTNIYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFG 283
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ AL+ ++ G+++ V + + R + K Y+
Sbjct: 284 FVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV 343
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NLS + E LR F +G + SA+V+ +
Sbjct: 344 N-LYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + GR R+ +S + + + +++ NL A+
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAI 157
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 158 DNKALHDTFAAFGNILSCKVAQDEYG-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKV 216
Query: 274 IV 275
V
Sbjct: 217 FV 218
>gi|226499830|ref|NP_001140942.1| uncharacterized protein LOC100273020 [Zea mays]
gi|194701856|gb|ACF85012.1| unknown [Zea mays]
Length = 473
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 91 EEPRSRARPCE---------LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
EEP + A+ + L+V NL + D L F+ FG + V + ETG SR
Sbjct: 207 EEPATNAKKSKTESADNSPNLFVGNLSWNVDEEWLRREFESFGELSGVRIMTERETGRSR 266
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI--DMNSRTRNAEALISPPKKIFVY 199
G GY+ +SAK A A +++ GR + + ++ D NS+ +A +
Sbjct: 267 GFGYVEYADASSAKAAYEAKKDTELDGRTINLDYAKPRDANSQAPREKAQTR-ARSFGDQ 325
Query: 200 ESP--HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAE 256
SP + L+VGNL + V +R F G + R+ D + + +G++ FSS D
Sbjct: 326 TSPESNTLFVGNLVFGVDENAVREVFEGQGQIQGVRLPTDAETGRPKGYGYVEFSSVDEA 385
Query: 257 RDAALSLNGTDFRGRTI 273
R A L GTD GR I
Sbjct: 386 RQALNELQGTDIGGRAI 402
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL D + + E+F+ G + V + + ETG +G GY+ S++ A+ A+ L
Sbjct: 333 LFVGNLVFGVDENAVREVFEGQGQIQGVRLPTDAETGRPKGYGYVEFSSVDEARQALNEL 392
Query: 162 DGSDVGGREMRVRFSI 177
G+D+GGR +R+ FS
Sbjct: 393 QGTDIGGRAIRLDFST 408
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D + L E+F FG LSV+V + TG S+G G++ A+ A+ +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ GR + R + ++ S R E + +++ Y+ + LYV NL + E
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQ--ERVSRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 RLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 20/186 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ + S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
++ + GR +R+ +S D R +++ NL ++ +
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGV----------------GNVFIKNLDDSIDNKA 114
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVRE 277
L + F FG ++S +V+ D G +R GF+ F + +A A ++NG R + V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG--SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGH 172
Query: 278 GVDRTE 283
R E
Sbjct: 173 FKSRKE 178
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG + G+ + V
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A+ T+ GR I+ +
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAV----TEMNGRIIVTK 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V ED R
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEM----KANFT-----NIYVKNIDLDVTDEDFRE 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F + G + SA + D +G+ +R FGF+++ +A A LN +F+G+ + V
Sbjct: 248 LFEKHGDITSASIARDDQGK-SRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQK 306
Query: 281 RTE 283
+ E
Sbjct: 307 KHE 309
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ S + A+ L
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S + + + +++ NL A+ + L +
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDHAIDNKALHD 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ + +++A +A +NG + + V +
Sbjct: 155 TFAAFGNILSCKVAQDELG-NSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIP 213
Query: 281 RTE 283
+ E
Sbjct: 214 KKE 216
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +YV N+ + E+F+ G + S ++R+ + G SRG G++ +A
Sbjct: 225 KANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFGFVNYIRHEAAA 283
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ L+ + G+++ V + + R + K Y+ + LY+ NL+
Sbjct: 284 VAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVN-LYIKNLNDD 342
Query: 214 VKPEDLRNHFGRFGTVVSARVL 235
V E LR+ F FGT+ SA+V+
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVI 364
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 95/184 (51%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG++LS +V+ + +G S+G G++ + +A AI L
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAIEKL 177
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R +E K F + ++V NL+ EDL+N
Sbjct: 178 NGMLLNDKQVFVGPFLRKQERESVSE------KTKF-----NNVFVKNLAETTSEEDLKN 226
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTIIVREGV 279
FG FG + S V+ D +G+ ++ FGF++F + DA R +LNG G+ V +
Sbjct: 227 MFGEFGPITSVVVMRDGEGK-SKCFGFVNFENADDAARSVE-ALNGKKVDGKEWYVGKAQ 284
Query: 280 DRTE 283
++E
Sbjct: 285 KKSE 288
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 15/180 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + +L MF FG + SV V R+ E G S+ G++ + + A ++ AL
Sbjct: 210 VFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGE-GKSKCFGFVNFENADDAARSVEAL 268
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G V G+E V + ++ ++R +++ K Y+ + LYV NL ++
Sbjct: 269 NGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADK---YQGAN-LYVKNLDDSIDD 324
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
+ L+ F FGT+ S +V+ D G +R GF++FSS E AL+ + GR I+ +
Sbjct: 325 DKLKELFTGFGTITSCKVMRDPNG-ISRGSGFVAFSSPEEAARALA----EMNGRMIVSK 379
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ SV+E + + LYV NL S D +L E+F FGT+ S +V R+P GISRG G++
Sbjct: 298 EQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDP-NGISRGSGFV 356
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++G + + + V + R +A S
Sbjct: 357 AFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFS 401
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L V L + F + G VVS RV D + + +G++++S+ + AL L
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDVL 90
Query: 264 NGTDFRGRTIIV 275
N T G I V
Sbjct: 91 NFTPLNGNPIRV 102
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 42/195 (21%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N +D L MF+ +G V SV V R+ + G SRG G++ S A+ A+ A+
Sbjct: 36 VYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRD-GNSRGFGFVAYDSHEEAQAAVEAM 94
Query: 162 DGSDVGG--------------------REMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+G ++ G +E+R ++ R + + +
Sbjct: 95 NGQEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGV------------ 142
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK---GQTTRVFGFISFSSDAERD 258
LYV NL V ++LR F +GT+ SA+++ D + G+ +R FGF+ FSS E
Sbjct: 143 --NLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEAT 200
Query: 259 AALSLNGTDFRGRTI 273
A+ T+ GR +
Sbjct: 201 KAV----TEMNGRIV 211
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 11/185 (5%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L E+F +G LS+ V + + G S+G G+++
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-DGGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ GR++ V + R + K ++ Y+ + LYV NL
Sbjct: 244 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGR 356
Query: 272 TIIVR 276
+ +
Sbjct: 357 IVATK 361
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL D L + F PFGT+ S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G V + + V +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHV 206
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V E+ R
Sbjct: 207 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NIYVKNVEQDVTDEEFRG 257
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F ++G + SA + D + +R FGF++FS AA+ +LN + +G+ + V
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQK 317
Query: 281 RTE 283
+ E
Sbjct: 318 KHE 320
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ + E +F
Sbjct: 210 LLNEKKVFVGHHIAKKDR--------QSKFEE--MKANFTNIYVKNVEQDVTDEEFRGLF 259
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S +SR+ ETG SRG G++ +A A+ AL+ ++ G+++ V + +
Sbjct: 260 EKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NLS + E LR F +G + SA+V+ +
Sbjct: 320 EREEELRKQYEAARIEKASKYQGVN-LYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + GR R+ +S + + + +++ NL A+
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAI 157
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 158 DNKALHDTFAAFGNILSCKVAQDEYG-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKV 216
Query: 274 IV 275
V
Sbjct: 217 FV 218
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL + D L + F FG +LS +V+ + +G S+G G++ S +A+NAI
Sbjct: 100 ANIFIKNLDKGIDHKALHDTFSSFGNILSCKVATD-ASGQSKGYGFVQFDSEEAAQNAID 158
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G V +++ V + R ++ + + K + ++V NL+ + E+L
Sbjct: 159 KLNGMLVNDKQVYVGHFL----RKQDRDGALYSIKF-------NNVFVKNLAESTTDEEL 207
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
+N F G + SA V+ D G+ ++ FGF++F S+D A +LNG G V +
Sbjct: 208 KNIFAEHGAITSAVVMRDADGK-SKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKA 266
Query: 279 VDRTE 283
++E
Sbjct: 267 QKKSE 271
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S EL +F G + S V R+ + G S+ G++ S + A A+ AL
Sbjct: 193 VFVKNLAESTTDEELKNIFAEHGAITSAVVMRDAD-GKSKCFGFVNFESADDAAKAVEAL 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLR 220
+G + G E V + + R + K V + LY+ NL ++ E L+
Sbjct: 252 NGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEKLK 311
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F FG + S +V+ D G +R GF++FS+ E AL+ +NG + + V
Sbjct: 312 ELFSDFGAITSCKVMRDPSG-ISRGSGFVAFSTPEEASRALAEMNGKMLISKPLYV 366
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S + +L E+F FG + S +V R+P +GISRG G++
Sbjct: 281 EQSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDP-SGISRGSGFV 339
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G + + + V + R +A S
Sbjct: 340 AFSTPEEASRALAEMNGKMLISKPLYVALAQRKEERRARLQAQFS 384
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P LYVG+L + V L + F + G VVS RV D + + +G++++S+ +DAA
Sbjct: 11 PTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSN--PQDAAR 68
Query: 262 SLNGTDF 268
+L+ +F
Sbjct: 69 ALDVLNF 75
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +V+ +P G S+G G++ +A AI
Sbjct: 120 ANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIE 178
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V R E SP F + +YV NL+ +DL
Sbjct: 179 KLNGMLMNDKKVYV------GPFVRKQERDNSPGNVKF-----NNVYVKNLAETTTEDDL 227
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREG 278
+ FG+FG + S V+ D G+ ++ FGF++F S E A+ LNG F + V
Sbjct: 228 KEIFGKFGAITSVVVMRDGDGR-SKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRA 286
Query: 279 VDRTE 283
++E
Sbjct: 287 QKKSE 291
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G V+SV V R+ + S G Y+ + A A+ L
Sbjct: 34 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 93
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR +R+ +S S ++ A +++ NL ++ + L +
Sbjct: 94 NFTPINGRPIRIMYSNRDPSLRKSGTA---------------NIFIKNLDKSIDNKALYD 138
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G+ ++ +GF+ + D AA+ LNG + + V V
Sbjct: 139 TFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVR 197
Query: 281 RTE 283
+ E
Sbjct: 198 KQE 200
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L E+F FG + SV V R+ + G S+ G++ S + A A+ L
Sbjct: 213 VYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 271
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----LYVGNLSWAVKP 216
+G +E V + + R E + + + E+ K LY+ NL V
Sbjct: 272 NGKKFSDKEWYVGRAQKKSER----EIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDD 327
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
E LR F FGT+ S +V+ D G +R GF++F S + AL+
Sbjct: 328 EKLRELFAEFGTITSCKVMRDSNG-ASRGSGFVAFKSADDASRALA 372
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LY+ NL + D +L E+F FGT+ S +V R+ G SRG G++
Sbjct: 301 EKNLQEAADKYQNTNLYLKNLDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFV 359
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S + A A+ ++ VG + + V + R +A S
Sbjct: 360 AFKSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKARLQAQFS 404
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 164 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHV 222
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V E+ R
Sbjct: 223 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NIYVKNVEQDVTDEEFRG 273
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F ++G + SA + D + +R FGF++FS AA+ +LN + +G+ + V
Sbjct: 274 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQK 333
Query: 281 RTE 283
+ E
Sbjct: 334 KHE 336
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ + E +F
Sbjct: 226 LLNEKKVFVGHHIAKKDR--------QSKFEE--MKANFTNIYVKNVEQDVTDEEFRGLF 275
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S +SR+ ETG SRG G++ +A A+ AL+ ++ G+++ V + +
Sbjct: 276 EKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 335
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NLS + E LR F +G + SA+V+ +
Sbjct: 336 EREEELRKQYEAARIEKASKYQGVN-LYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 393
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 69 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 128
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + GR R+ +S + + + +++ NL A+
Sbjct: 129 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAI 173
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 174 DNKALHDTFAAFGNILSCKVAQDEYG-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKV 232
Query: 274 IV 275
V
Sbjct: 233 FV 234
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG + G+ + V
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQ 269
Query: 280 DRTE 283
+ E
Sbjct: 270 KKAE 273
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A+ T+ GR I+ +
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAV----TEMNGRIIVTK 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L +F FG LSV+V + E+G S+G G++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTD-ESGTSKGFGFVNFERHEDAQKAVEEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V + R R E L +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G + FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRNKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALETM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALFD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + DA A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A +E+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G ++G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRNKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + + +
Sbjct: 360 TKPLYIALA 368
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 15/194 (7%)
Query: 92 EPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+P SR + +++ NL +S D L + F FG +LS +V+ +G S+G G++
Sbjct: 121 DPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATE-MSGESKGYGFVQYEQ 179
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
SA+NAI L+G + +++ V + R + E + PK + +YV NL
Sbjct: 180 DESAQNAINELNGMLLNDKKVYVGPFV----RKQERENVFGSPKF-------NNVYVKNL 228
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFR 269
S + ++L+ FG FG + S V+ G+ +R FGF++F + D A LNG F
Sbjct: 229 SESTTEDNLKELFGNFGPITSVIVVRADDGK-SRCFGFVNFENPDDAVHAVEDLNGKKFD 287
Query: 270 GRTIIVREGVDRTE 283
+ + V ++E
Sbjct: 288 DKELYVGRAQKKSE 301
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 19/184 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G+V+SV V R+ T +S G Y+ S A A+ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + V G+ +R+ +S D +SR A +++ NL ++ + L
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGA----------------ANIFIKNLDKSIDNKALY 147
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
+ F FG ++S +V + G+ ++ +GF+ + D A++ LNG + + V V
Sbjct: 148 DTFSAFGNILSCKVATEMSGE-SKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFV 206
Query: 280 DRTE 283
+ E
Sbjct: 207 RKQE 210
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELL-EMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ S +E R + LY+ NL S D E L E+F FGT+ S +V R+ G+++G G+
Sbjct: 311 EKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRD-SNGVNKGSGF 369
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ S A A++A++G VG + + V + R +A S
Sbjct: 370 VAFKSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFS 415
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E F +G LSV+V +P +G S+G G+++ A A+ +
Sbjct: 199 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDM 257
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G DV G+ M R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 258 NGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 314
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V+ + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 315 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAV----TEMNGRIV 364
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A D++NGKD G +V+ + + +E SR
Sbjct: 238 GFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRY 297
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 298 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKA 355
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 356 VTEMNGRIVGSKPLYVALA 374
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADGEYGNLLF 72
Query: 162 DGSDV-----GGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
D DV GG+ + + + + R + +++ NL ++
Sbjct: 73 DRMDVCFHVAGGKAFTLLWFSERDPSLRKSGV--------------GNVFIKNLDKSIDN 118
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
+ L + F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 119 KALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 176
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V+++ ETG S+G G++ + +A +I +
Sbjct: 92 VFIKNLDKSIDNKALFDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 150
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+ + V I R E + K+F +YV N E L++
Sbjct: 151 NGMLLNGKMVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDFSDEMLKD 201
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDF-RGRTIIVREGV 279
F ++G + S +V++ G +R FGF++F DA A + LNG + G+ + V
Sbjct: 202 MFEKYGRITSHKVMYKDDG-NSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQ 260
Query: 280 DRTE 283
+ E
Sbjct: 261 KKAE 264
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 17/178 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N F L +MF+ +G + S +V + G SRG G++ ++A+ A I L
Sbjct: 185 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACIEL 243
Query: 162 DGSD-VGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + V G+ + V + R R E L S +++ Y+ + LYV NL +
Sbjct: 244 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDD 300
Query: 217 EDLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
E LR F FGT+ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 301 ERLRKEFAPFGTITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 351
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL ++ + L +
Sbjct: 64 NFDIIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALFD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG G+ + V +
Sbjct: 109 TFSAFGNILSCKVAQDETG-ASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
>gi|449297589|gb|EMC93607.1| hypothetical protein BAUCODRAFT_76311, partial [Baudoinia
compniacensis UAMH 10762]
Length = 253
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 5/177 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V L + D L+ F+ FG + S + + ETG S+G G++ S++ A A+
Sbjct: 3 LFVGGLSWNVDEEWLMREFEEFGELASTRIMTDRETGKSKGFGFVEFKSVDGAIKAVEGK 62
Query: 162 DGSDVGGREMRVRFS---IDMNSRTRNAEALISPPKKIFVYESPHK-LYVGNLSWAVKPE 217
G ++ GR +R+ F+ N RT + K V + P L+VGN+S+ +
Sbjct: 63 QGGEIDGRNVRLDFTEGRSQNNQRTPQQRSSDRAGKFGDVPKEPSSTLFVGNVSFDANED 122
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS-FSSDAERDAALSLNGTDFRGRTI 273
+ F +G++ + R+ DR + FG++ FS D + A +L G + GR+I
Sbjct: 123 MVTEVFSEYGSIKAVRLPTDRDTGALKGFGYVEMFSIDDAKVAFEALQGAEIAGRSI 179
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V N+ SFD +E + E+F +G++ +V + + +TG +G GY+ M SI+ AK A
Sbjct: 110 LFVGNV--SFDANEDMVTEVFSEYGSIKAVRLPTDRDTGALKGFGYVEMFSIDDAKVAFE 167
Query: 160 ALDGSDVGGREMRVRFS 176
AL G+++ GR +R+ +S
Sbjct: 168 ALQGAEIAGRSIRLDYS 184
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 96/185 (51%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL ++ D L + F FG +LS +V+ + +G S+G G++ S +A+NAI
Sbjct: 119 ANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATD-ASGQSKGYGFVQFDSEEAAQNAID 177
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R + ++ +S K + +YV NL+ + EDL
Sbjct: 178 KLNGMLINDKQVYVGNFL----RKQERDSALSNIKF-------NNIYVKNLAESTTDEDL 226
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
++ F G + SA V+ D G+ ++ FGF++F + D A +LNG F + V +
Sbjct: 227 KSIFEEHGAITSAVVMRDADGK-SKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKA 285
Query: 279 VDRTE 283
++E
Sbjct: 286 QKKSE 290
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 13/170 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F+ G + S V R+ + G S+ G++ +++ A A+ AL
Sbjct: 212 IYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDAD-GKSKCFGFVNFENVDDAAKAVEAL 270
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + ++ + R ++L S K V LY+ NL +V
Sbjct: 271 NGKKFDDKEWYVGKAQKKSERELELKGRFEQSLESVEKYQAV-----NLYIKNLDDSVND 325
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
E L+ F FGT+ S +V+HD G +R GF++FS+ E AL+ LNG
Sbjct: 326 EKLKELFSDFGTITSCKVMHDPSG-ISRGSGFVAFSTPEEASRALAELNG 374
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LY+ NL S + +L E+F FGT+ S +V +P +GISRG G++ + A
Sbjct: 308 KYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDP-SGISRGSGFVAFSTPEEAS 366
Query: 156 NAIIALDGSDVGGREMRV 173
A+ L+G V + + V
Sbjct: 367 RALAELNGKMVVSKPLYV 384
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P LYVG+L + V L + F + G VVS RV D + + +G++++S+ +DAA
Sbjct: 30 PTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSN--PQDAAR 87
Query: 262 SLNGTDF 268
+L+ +F
Sbjct: 88 ALDVLNF 94
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHV 206
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V E+ R
Sbjct: 207 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NIYVKNVEQDVTDEEFRG 257
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F ++G + SA + D + +R FGF++FS AA+ +LN + +G+ + V
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQK 317
Query: 281 RTE 283
+ E
Sbjct: 318 KHE 320
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ + E +F
Sbjct: 210 LLNEKKVFVGHHIAKKDR--------QSKFEE--MKANFTNIYVKNVEQDVTDEEFRGLF 259
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S +SR+ ETG SRG G++ +A A+ AL+ ++ G+++ V + +
Sbjct: 260 EKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKH 319
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NLS + E LR F +G + SA+V+ +
Sbjct: 320 EREEELRKQYEAARIEKASKYQGVN-LYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + GR R+ +S + + + +++ NL A+
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAI 157
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 158 DNKALHDTFAAFGNILSCKVAQDEYG-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKV 216
Query: 274 IV 275
V
Sbjct: 217 FV 218
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 88/176 (50%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E F +G LSV+V +P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G DV G+ M R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V+ + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ + F+ F + DA A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV 170
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A D++NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 242 EDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S A A+ ++G VG
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 SKPLYVALA 368
>gi|442627567|ref|NP_723738.2| arrest, isoform F [Drosophila melanogaster]
gi|440213732|gb|AAN10811.2| arrest, isoform F [Drosophila melanogaster]
Length = 620
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 38/210 (18%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDI 113
R+V+A+VD++A +D D++V P +++V +P+S D
Sbjct: 119 RNVVAMVDDDACF--------------RLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDE 164
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMR 172
S+L EMF+ +G V S+ V R+ TGIS+GC ++T + ++A A AL + G
Sbjct: 165 SQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHP 224
Query: 173 VRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
++ +S RN KL+VG L+ + D+R F G +
Sbjct: 225 IQMK-PADSENRNE----------------RKLFVGMLNKKLNENDVRKLFEVHGAIEEC 267
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAALS 262
VL D+ GQ ++ F++F A + AA+S
Sbjct: 268 TVLRDQNGQ-SKGCAFVTF---ATKHAAIS 293
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 536 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 595
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 596 AMNGFQVGTKRLKVQLKKPKDSK 618
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 538 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 597
Query: 264 NG 265
NG
Sbjct: 598 NG 599
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 15/194 (7%)
Query: 92 EPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+P SR + +++ NL +S D L + F FG +LS +V+ +G S+G G++
Sbjct: 121 DPSSRKSGAANIFIKNLDKSIDNKALYDTFSAFGNILSCKVATE-MSGESKGYGFVQYEQ 179
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
SA+NAI L+G + +++ V + R + E + PK + +YV NL
Sbjct: 180 DESAQNAINELNGMLLNDKKVYVGPFV----RKQERENVFGSPKF-------NNVYVKNL 228
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFR 269
S + ++L+ FG FG + S V+ G+ +R FGF++F + D A LNG F
Sbjct: 229 SESTTEDNLKELFGNFGPITSVIVVRADDGK-SRCFGFVNFENPDDAVHAVEDLNGKKFD 287
Query: 270 GRTIIVREGVDRTE 283
+ + V ++E
Sbjct: 288 DKELYVGRAQKKSE 301
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 88/184 (47%), Gaps = 19/184 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G+V+SV V R+ T +S G Y+ S A A+ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALEML 103
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + V G+ +R+ +S D +SR A +++ NL ++ + L
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGA----------------ANIFIKNLDKSIDNKALY 147
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279
+ F FG ++S +V + G+ ++ +GF+ + D A++ LNG + + V V
Sbjct: 148 DTFSAFGNILSCKVATEMSGE-SKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFV 206
Query: 280 DRTE 283
+ E
Sbjct: 207 RKQE 210
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELL-EMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ S +E R + LY+ NL S D E L E+F FGT+ S +V R+ G+++G G+
Sbjct: 311 EKSNKETADRNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRD-SNGVNKGSGF 369
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ S A A++A++G VG + + V + R +A S
Sbjct: 370 VAFKSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFS 415
>gi|71652518|ref|XP_814914.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70879928|gb|EAN93063.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 477
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 16/173 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ N+P + EL +F P+G +LS V RN TG S G ++ S A +AI +
Sbjct: 117 LFISNIPHKMEQRELENLFAPYGQILSAAVMRNIHTGKSLGTAFVRYASTEEAMSAIKGM 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G +GGR + V+++ + EA KKI KL+V N+ + L +
Sbjct: 177 SGKRIGGRAIAVQWAKKQHDYAPVGEAR----KKI------SKLFVRNIPLDINTVVLED 226
Query: 222 HFGRFGTVVSARVLHDR----KGQTTRVFGFISFSSD--AERDAALSLNGTDF 268
F +G V S + D + + R FI+F +D AER A N F
Sbjct: 227 MFNMYGPVKSVSIHKDTAPDCEKNSERHIAFITFLADGAAERAAEAVHNTRPF 279
>gi|431930897|ref|YP_007243943.1| RRM domain-containing RNA-binding protein [Thioflavicoccus mobilis
8321]
gi|431829200|gb|AGA90313.1| RRM domain-containing RNA-binding protein [Thioflavicoccus mobilis
8321]
Length = 90
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
+YVGNL + VK DLR F RFG V V+ DR ++ FGF+ SS+++ DAA+ L
Sbjct: 3 IYVGNLPYNVKDADLRETFSRFGEVSQVTVIMDRLTGESKGFGFVEMSSNSQADAAIKGL 62
Query: 264 NGTDFRGRTIIVREGVDRTES 284
NGTD GR I V + +++S
Sbjct: 63 NGTDLNGRNITVNQAKPKSDS 83
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+YV NLP + ++L E F FG V V V + TG S+G G++ M S + A AI
Sbjct: 1 MNIYVGNLPYNVKDADLRETFSRFGEVSQVTVIMDRLTGESKGFGFVEMSSNSQADAAIK 60
Query: 160 ALDGSDVGGREMRV 173
L+G+D+ GR + V
Sbjct: 61 GLNGTDLNGRNITV 74
>gi|24583877|ref|NP_723739.1| arrest, isoform A [Drosophila melanogaster]
gi|281364913|ref|NP_001162963.1| arrest, isoform E [Drosophila melanogaster]
gi|15291827|gb|AAK93182.1| LD29068p [Drosophila melanogaster]
gi|22946320|gb|AAN10812.1| arrest, isoform A [Drosophila melanogaster]
gi|220945910|gb|ACL85498.1| aret-PA [synthetic construct]
gi|220955600|gb|ACL90343.1| aret-PA [synthetic construct]
gi|272407017|gb|ACZ94249.1| arrest, isoform E [Drosophila melanogaster]
Length = 604
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 38/210 (18%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDI 113
R+V+A+VD++A +D D++V P +++V +P+S D
Sbjct: 119 RNVVAMVDDDACF--------------RLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDE 164
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMR 172
S+L EMF+ +G V S+ V R+ TGIS+GC ++T + ++A A AL + G
Sbjct: 165 SQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHP 224
Query: 173 VRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
++ +S RN KL+VG L+ + D+R F G +
Sbjct: 225 IQMK-PADSENRNE----------------RKLFVGMLNKKLNENDVRKLFEVHGAIEEC 267
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAALS 262
VL D+ GQ ++ F++F A + AA+S
Sbjct: 268 TVLRDQNGQ-SKGCAFVTF---ATKHAAIS 293
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 520 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 579
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 580 AMNGFQVGTKRLKVQLKKPKDSK 602
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 522 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 581
Query: 264 NG 265
NG
Sbjct: 582 NG 583
>gi|407850128|gb|EKG04639.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 477
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 16/173 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ N+P + EL +F P+G +LS V RN TG S G ++ S A +AI +
Sbjct: 117 LFISNIPHKMEQRELENLFAPYGQILSAAVMRNIHTGKSLGTAFVRYASTEEAMSAIKGM 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G +GGR + V+++ + EA KKI KL+V N+ + L +
Sbjct: 177 SGKRIGGRAIAVQWAKKQHDYAPVGEAR----KKI------SKLFVRNIPLDINTVVLED 226
Query: 222 HFGRFGTVVSARVLHDR----KGQTTRVFGFISFSSD--AERDAALSLNGTDF 268
F +G V S + D + + R FI+F +D AER A N F
Sbjct: 227 MFSMYGPVKSVSIHKDTAPDCEKNSERHIAFITFLADGAAERAAEAVHNTRPF 279
>gi|365091633|ref|ZP_09328988.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363415944|gb|EHL23068.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 129
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++ + EDL+ F ++G+V SA+V+ +R ++ FGF+ SDAE AA+
Sbjct: 3 NKLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
Query: 263 -LNGTDFRGRTIIVRE 277
++GT+F GR ++V E
Sbjct: 63 GVHGTNFGGRDLVVNE 78
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP SF +L + F +G+V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSRT 183
+ G++ GGR++ V + M R
Sbjct: 64 VHGTNFGGRDLVVNEARPMEPRA 86
>gi|351731831|ref|ZP_08949522.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 131
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++ + EDL+ F ++G+V SA+V+ +R ++ FGF+ SDAE AA+
Sbjct: 3 NKLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQ 62
Query: 263 -LNGTDFRGRTIIVRE 277
++GT+F GR ++V E
Sbjct: 63 GVHGTNFGGRDLVVNE 78
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP SF +L + F +G+V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSFRDEDLQQTFSQYGSVGSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSRT 183
+ G++ GGR++ V + M R
Sbjct: 64 VHGTNFGGRDLVVNEARPMEPRA 86
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 220 NGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 276
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 277 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 329
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 210 EDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 269
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 270 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 327
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 328 TKPLYVALA 336
>gi|296811816|ref|XP_002846246.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
gi|238843634|gb|EEQ33296.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
Length = 133
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+P KL++G L+W + LR+ F +FGT+ A V+ DR +R FGF+ FS+++E DAA
Sbjct: 2 APPKLFIGGLAWHTTDDTLRDGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSNESEADAA 61
Query: 261 L-SLNGTDFRGRTIIVREGVDRT 282
L ++N +F GR I V + +R+
Sbjct: 62 LNAMNNQEFDGRVIRVDKATERS 84
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNI---------------FVKNLDKSINNKVLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
FG ++S +V+ D G ++ +GF+ F + +A A +NGT R + V
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFV 170
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + EMF FG ++S + ++ + G +G G++
Sbjct: 208 DSQLEE--TKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDAD-GKLKGFGFV 264
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESP 202
+ A A+ AL+ SD+ G ++ V + N R + EA +K+ Y+
Sbjct: 265 NYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRL--EKMAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL +V E L F +GT+ SA+V+ G+ ++ FGF+ FS+ E A++
Sbjct: 323 N-LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGK-SKGFGFVCFSTPEEATKAIT 380
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G S+G G++ +AK AI AL
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K + LYV N++ E +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKER----DSQLEETKAHYT-----NLYVKNINSETTDEKFQE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG +VSA + D G+ + FGF+++ + + A+ +LN +D G + V
Sbjct: 238 MFAQFGPIVSASLEKDADGK-LKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQK 296
Query: 281 RTE 283
+ E
Sbjct: 297 KNE 299
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L ++F P G+V S+ V R+ T S G Y+ + + AI L
Sbjct: 40 LYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIDQL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S S + I ++ NL + + L +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNI---------------FIKNLHPDIDNKALYD 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S+++ D G+ ++ FGF+ F + A ++A +LNG G+ I V +
Sbjct: 145 TFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLS 203
Query: 281 RTE 283
R E
Sbjct: 204 RKE 206
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F P+GT+ S +V R+ E G S+G G++ +
Sbjct: 314 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRS-ENGKSKGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D + + F FG +LS +V+ + E+ S+G G++ + +A NAI +
Sbjct: 83 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESN-SKGYGFVHFETEEAANNAIQKV 141
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ V + + R E + + F+ +Y+ N + E LR
Sbjct: 142 NGMLLNGRKVFVGKFVPRSER----EKQLGQKARRFM-----NVYIKNFGDDLDDEKLRE 192
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVD 280
F ++G + SA+V+ D G+ + FGF+SF + A++ LN + G+ + V
Sbjct: 193 MFEKYGKITSAKVMADETGK-PKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYVGRAQK 251
Query: 281 RTE 283
++E
Sbjct: 252 KSE 254
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 5/161 (3%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +Y+ N D +L EMF+ +G + S +V + ETG +G G+++ +A+ A
Sbjct: 172 RFMNVYIKNFGDDLDDEKLREMFEKYGKITSAKVMAD-ETGKPKGFGFVSFEDPENAEKA 230
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVK 215
+ L+ ++ G+ + V + + R + K +I Y+ + LYV NL ++
Sbjct: 231 VNDLNNKELNGKVLYVGRAQKKSERAAELKRRFEQLKMDRINRYQGVN-LYVKNLDDSID 289
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
E LR F FGT+ SA+V+ D G+ ++ FGF+ FS+ E
Sbjct: 290 DERLRKEFTPFGTITSAKVMTDSNGR-SKGFGFVCFSAPEE 329
>gi|259089631|gb|ACV91671.1| AT31783p [Drosophila melanogaster]
Length = 810
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 325 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 372
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 373 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 432
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 433 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 475
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 476 LRDQNGQ-SKGCAFVTF---ATKHAAIS 499
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 726 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 785
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 786 AMNGFQVGTKRLKVQLKKPKDSK 808
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 728 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 787
Query: 264 NG 265
NG
Sbjct: 788 NG 789
>gi|168988195|gb|ACA35266.1| nuclear transport family protein [Cucumis sativus]
Length = 565
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 168 GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG 227
GR +RV FS PK+ E+ +KL+VGNLSW+V E L F +G
Sbjct: 2 GRILRVNFSDK------------PKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYG 49
Query: 228 TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
VV ARV++D + +R +GF+S+S+ +E + AL ++N + GR I V
Sbjct: 50 NVVGARVIYDGETGKSRGYGFVSYSTKSEMETALETINELELEGRVIRV 98
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
D +EP +L+V NL S L + F+ +G V+ V + ETG SRG G+
Sbjct: 11 DKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGF 70
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRV 173
++ + + + A+ ++ ++ GR +RV
Sbjct: 71 VSYSTKSEMETALETINELELEGRVIRV 98
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P TG S+G G+++ A A+ +
Sbjct: 189 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEM 247
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 248 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 304
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ A V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 305 KLRKEFSPFGSITRAEVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 354
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 15/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 97 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 154
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E L+
Sbjct: 155 NGMLLNDRKVFVGRF----KSR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDESLK 204
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279
F +FG +S +V+ D G+ ++ FGF+S+ + + A+ +NG + G+ I V
Sbjct: 205 ELFSQFGKTLSVKVMRDPTGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 263
Query: 280 DRTE 283
+ E
Sbjct: 264 KKVE 267
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ EV E G S+G G++ S
Sbjct: 281 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITRAEVML--EDGRSKGFGFVCFSS 338
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 339 PEEATKAVTEMNGRIVGSKPLYVALA 364
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 148 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EYGNSKGYGFVHYETAEAATNAIKHV 206
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V E+ R+
Sbjct: 207 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NIYVKNVEQDVTDEEFRS 257
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F ++G + SA + D + +R FGF++FS AA+ LN + +G+ + V
Sbjct: 258 LFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYV 312
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 13/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ + E +F
Sbjct: 210 LLNEKKVFVGHHIAKKDR--------QSKFEE--MKANFTNIYVKNVEQDVTDEEFRSLF 259
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S +SR+ ETG SRG G++ +A A+ L+ ++ G+++ V + +
Sbjct: 260 EKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKH 319
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NLS + E LR F +G + SA+V+ +
Sbjct: 320 EREEELRKQYEAARIEKASKYQGVN-LYIKNLSDDIDDEKLRELFSSYGNITSAKVMRE 377
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 53 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 112
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + GR R+ +S + + + +++ NL A+
Sbjct: 113 ERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAI 157
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 158 DNKALHDTFAAFGNILSCKVAQDEYG-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKV 216
Query: 274 IV 275
V
Sbjct: 217 FV 218
>gi|195395310|ref|XP_002056279.1| GJ10859 [Drosophila virilis]
gi|194142988|gb|EDW59391.1| GJ10859 [Drosophila virilis]
Length = 388
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 18/198 (9%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
N KD V + + SS L V LP EL +F FG + V++ R
Sbjct: 3 NIKDEVFADYMATASSSPAEDQTGETTNLLVNYLPFDMLEGELYALFVSFGHIKHVKIIR 62
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ ETG S G++ + +A A + L+G V G+ ++V + + RNA
Sbjct: 63 DAETGASHCYGFVNFSAAGNANLAQVCLNGRQVRGKRLKVSPARPSSMDIRNA------- 115
Query: 194 KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
K+YV NL + +R FGR+G ++ VL DR +R F+ F
Sbjct: 116 ----------KVYVANLPIDYNEQKVRATFGRYGNILDLNVLKDRFTGLSRGIAFVRFDL 165
Query: 254 DAERDAALS-LNGTDFRG 270
+ D A+S +NG G
Sbjct: 166 KSSADMAISVMNGYTLEG 183
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + KK + KLYV N
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG
Sbjct: 300 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDALKAMTEMNG 354
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 5 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +G +
Sbjct: 110 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLQGCKV 167
Query: 274 IV 275
V
Sbjct: 168 FV 169
>gi|442627571|ref|NP_001260404.1| arrest, isoform H [Drosophila melanogaster]
gi|442627573|ref|NP_001260405.1| arrest, isoform I [Drosophila melanogaster]
gi|442627575|ref|NP_001260406.1| arrest, isoform J [Drosophila melanogaster]
gi|442627577|ref|NP_001260407.1| arrest, isoform K [Drosophila melanogaster]
gi|440213734|gb|AGB92939.1| arrest, isoform H [Drosophila melanogaster]
gi|440213735|gb|AGB92940.1| arrest, isoform I [Drosophila melanogaster]
gi|440213736|gb|AGB92941.1| arrest, isoform J [Drosophila melanogaster]
gi|440213737|gb|AGB92942.1| arrest, isoform K [Drosophila melanogaster]
Length = 573
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 38/210 (18%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDI 113
R+V+A+VD++A +D D++V P +++V +P+S D
Sbjct: 88 RNVVAMVDDDACF--------------RLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDE 133
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMR 172
S+L EMF+ +G V S+ V R+ TGIS+GC ++T + ++A A AL + G
Sbjct: 134 SQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHP 193
Query: 173 VRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
++ +S RN KL+VG L+ + D+R F G +
Sbjct: 194 IQMK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEEC 236
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAALS 262
VL D+ GQ ++ F++F A + AA+S
Sbjct: 237 TVLRDQNGQ-SKGCAFVTF---ATKHAAIS 262
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 489 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 548
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 549 AMNGFQVGTKRLKVQLKKPKDSK 571
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 491 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 550
Query: 264 NG 265
NG
Sbjct: 551 NG 552
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQDVTEEEFRE 248
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +FG + SA + D++G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 249 LFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYV 302
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E E+F+ FG + S +SR+ E G SRG G
Sbjct: 217 DRQSKFEE--MKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 333
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR FG +GT+ SA+V+ D
Sbjct: 334 N-LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 44 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 103
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 104 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAI 148
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 149 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 274 IV 275
V
Sbjct: 208 FV 209
>gi|431794924|ref|YP_007221829.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430785150|gb|AGA70433.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 83
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVGNL W EDL + FG++G V+S+R++ DR+ +R FGF+ D A LN
Sbjct: 4 LYVGNLPWNTTSEDLNSFFGQYGQVISSRIITDRETGRSRGFGFVEVEDDDASRMAEDLN 63
Query: 265 GTDFRGRTIIVRE 277
G DF GR + V E
Sbjct: 64 GKDFGGRPLTVNE 76
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + +L F +G V+S + + ETG SRG G++ + ++++ A L
Sbjct: 4 LYVGNLPWNTTSEDLNSFFGQYGQVISSRIITDRETGRSRGFGFVEVEDDDASRMA-EDL 62
Query: 162 DGSDVGGREMRV 173
+G D GGR + V
Sbjct: 63 NGKDFGGRPLTV 74
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 90/178 (50%), Gaps = 8/178 (4%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E R++A +Y+ N D L E+F +G +LSV+V N G SRG G+++ S
Sbjct: 181 ELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNS-CGKSRGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP-HKLYVGN 209
+A+ A+ ++G +V G+ + V + R + + KK + KLY+ N
Sbjct: 240 HEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
L + E LR F FG++ +V+ + +GQ ++ FG I FSS DA R A +NG
Sbjct: 300 LDENIDDEKLRKEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSSEDAAR-AMTVMNG 354
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPF---GTVLSVEVSRNPETGISRGCGYLTMGSI 151
++ R LYV +L D++E L +FK F G VLS+ + R+ T S G Y+ +
Sbjct: 5 AKYRMASLYVGDLHS--DVTEDL-LFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A+ A+ ++ V G+ +R+ +S R+A S +F + NL
Sbjct: 62 ADAQKALDTMNFDVVKGKAIRLMWS------QRDAYLRKSGIGNVF---------IKNLD 106
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
++ + L F FG ++S++V+ D +G ++ + F+ F S + D A+ +NG
Sbjct: 107 KSIDNKSLYECFSAFGKILSSKVMSDDRG--SKGYAFVHFQSQSAADRAIEEMNG 159
>gi|121700823|ref|XP_001268676.1| RNA splicing factor (Pad-1), putative [Aspergillus clavatus NRRL 1]
gi|119396819|gb|EAW07250.1| RNA splicing factor (Pad-1), putative [Aspergillus clavatus NRRL 1]
Length = 566
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 10/183 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L EL+ F+ G V ++ ++ +G S+G GY+ S S AI L
Sbjct: 178 IFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKSEESVAPAI-QL 236
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESP-HKLYVGNLSWAVKPEDL 219
G + G + + + + N + RN EA + +P H+LYVGN+ +++ DL
Sbjct: 237 TGQKLLGIPIIAQLTEAEKNRQARNPEASSG-----HNHAAPFHRLYVGNIHFSITENDL 291
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+N F FG + ++ D G+ +R +GF+ F + R+A +NG D GR I V G
Sbjct: 292 QNVFEPFGELEFVQLQKDETGR-SRGYGFVQFRDPNQAREALEKMNGFDLAGRAIRVGLG 350
Query: 279 VDR 281
D+
Sbjct: 351 NDK 353
>gi|406985531|gb|EKE06283.1| RNP-1 like protein RNA-binding protein [uncultured bacterium]
Length = 83
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 45/73 (61%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
KL++GNLSW V +DLR F FGTV+ A V+ DR +R FGF+ ++ + + AL
Sbjct: 2 KKLFIGNLSWEVTSDDLRAFFASFGTVIDAVVIMDRMTGRSRGFGFVEMETEEQANKALE 61
Query: 263 LNGTDFRGRTIIV 275
NG D +GR + V
Sbjct: 62 GNGKDLKGRAMNV 74
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ NL +L F FGTV+ V + TG SRG G++ M + A A+
Sbjct: 3 KLFIGNLSWEVTSDDLRAFFASFGTVIDAVVIMDRMTGRSRGFGFVEMETEEQANKALEG 62
Query: 161 LDGSDVGGREMRVRFS 176
+G D+ GR M V +
Sbjct: 63 -NGKDLKGRAMNVNMA 77
>gi|385808623|ref|YP_005845019.1| RRM domain-containing protein [Ignavibacterium album JCM 16511]
gi|383800671|gb|AFH47751.1| RRM domain protein [Ignavibacterium album JCM 16511]
Length = 83
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
KL+VG+L W+V +L+ F +G V SA+V+ D++ + ++ FGF+ F ++AE AA+ +
Sbjct: 4 KLFVGSLPWSVNDAELKTLFEPYGKVASAKVVTDKQTRRSKGFGFVEFETEAEASAAINA 63
Query: 263 LNGTDFRGRTIIVREG 278
LNG++ +GR IIV E
Sbjct: 64 LNGSEVKGRNIIVSEA 79
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V +LP S + +EL +F+P+G V S +V + +T S+G G++ + A AI
Sbjct: 3 TKLFVGSLPWSVNDAELKTLFEPYGKVASAKVVTDKQTRRSKGFGFVEFETEAEASAAIN 62
Query: 160 ALDGSDVGGREMRV 173
AL+GS+V GR + V
Sbjct: 63 ALNGSEVKGRNIIV 76
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANQAVEDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V+ + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + DA A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|392593257|gb|EIW82582.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 136
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
KLYVGNLSW+ + LRN FGR+G V + V+ DR+ +R FGF++F++ E +AA+
Sbjct: 4 KLYVGNLSWSTGDDGLRNAFGRYGAVTDSIVMRDRETGRSRGFGFVTFTTAEEANAAMGQ 63
Query: 263 LNGTDFRGRTIIV 275
++ T+ GRTI V
Sbjct: 64 MDQTELDGRTIRV 76
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+LYV NL S L F +G V V R+ ETG SRG G++T + A A+
Sbjct: 3 SKLYVGNLSWSTGDDGLRNAFGRYGAVTDSIVMRDRETGRSRGFGFVTFTTAEEANAAMG 62
Query: 160 ALDGSDVGGREMRV 173
+D +++ GR +RV
Sbjct: 63 QMDQTELDGRTIRV 76
>gi|194861289|ref|XP_001969750.1| GG23776 [Drosophila erecta]
gi|190661617|gb|EDV58809.1| GG23776 [Drosophila erecta]
Length = 837
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 340 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 387
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 388 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 447
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 448 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 490
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 491 LRDQNGQ-SKGCAFVTF---ATKHAAIS 514
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 753 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 812
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 813 AMNGFQVGTKRLKVQLKKPKDSK 835
Score = 41.2 bits (95), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 755 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 814
Query: 264 NG 265
NG
Sbjct: 815 NG 816
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 142 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + ++ R
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDSEIDDDEFRK 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +FG + SA + D++G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 252 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYV 305
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL D E +MF+ FG + S +SR+ E G SRG G
Sbjct: 220 DRQSKFEE--MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 277 FVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR FG +GT+ SA+V+ D
Sbjct: 337 N-LYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 370
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ +P S LYV L S + L E+F G V S+ V R+ T S G Y+
Sbjct: 44 SAANQPHS----ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVN 99
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ + A+ L+ + + G+ R+ +S + + + +++
Sbjct: 100 YNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFI 144
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG
Sbjct: 145 KNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGM 203
Query: 267 DFRGRTIIVREGVDRTE 283
+ + V + + +
Sbjct: 204 LLNDKKVFVGHHISKKD 220
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 238 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 296
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 297 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 356
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG
Sbjct: 357 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNG 411
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 62 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 121
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 122 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDKSI 166
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +G +
Sbjct: 167 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 224
Query: 274 IV 275
V
Sbjct: 225 FV 226
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+ AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAAQQAIKHV 207
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ ++ R
Sbjct: 208 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NIYVKNVNPEASDDEFRE 258
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F R+G + S+ + D+ G+ +R FGF+++++ ++ A LNG DF+G+ + V
Sbjct: 259 LFERYGEITSSSLARDQDGK-SRGFGFVNYTTHESAYKAVDELNGKDFKGQDLYVGRAQK 317
Query: 281 RTE 283
+ E
Sbjct: 318 KHE 320
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 80 GGNEVDDDSSVEEPRSRA----RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
GG+E D+S P S A LYV L S + L E+F G V S+ V R+
Sbjct: 38 GGSE---DASAPTPNSAAPHPQNSASLYVGELDPSVTEAMLFELFSQIGAVASIRVCRDA 94
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK 195
T S G Y+ S + + A+ L+ + + GR R+ +S + + +
Sbjct: 95 VTRRSLGYAYVNYNSTSDGEKALEELNYTIIKGRPCRIMWSQRDPALRKTGQG------- 147
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD- 254
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + +D
Sbjct: 148 --------NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEHG-NSKGYGFVHYETDE 198
Query: 255 AERDAALSLNGTDFRGRTIIV 275
A + A +NG + + V
Sbjct: 199 AAQQAIKHVNGMLLNEKKVYV 219
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ E E+F+ +G + S ++R+ + G SRG G
Sbjct: 227 DRQSKFEE--MKANFTNIYVKNVNPEASDDEFRELFERYGEITSSSLARD-QDGKSRGFG 283
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA A+ L+G D G+++ V + + R + K Y+
Sbjct: 284 FVNYTTHESAYKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARLEKASKYQGV 343
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NL V E LR+ F FG + SA+V+ D
Sbjct: 344 N-LYIKNLDDDVDDEKLRHMFSEFGPITSAKVMRD 377
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 91/183 (49%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V+ + E G SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETHEAAQQAINTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARALEFT-----NIYVKNLPVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F E + A + +NG + GR +
Sbjct: 210 LFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RVE 271
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 8/141 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ +
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQM--KQDRLRRYQGVN-LYVKNLDDSIDDD 308
Query: 218 DLRNHFGRFGTVVSARVLHDR 238
LR F +G + SA+ R
Sbjct: 309 KLRKEFSPYGVITSAKKRRQR 329
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFV 170
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + G S+G G++ +A+ AI L
Sbjct: 147 VFIKNLDPSIDNKALYETFSAFGTILSCKVAMD-AVGRSKGYGFVQFEKEETAQAAIDKL 205
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R+R+ + P+ VY V NL + ++L+
Sbjct: 206 NGMLLNDKQVFVGHFVRRQDRSRSESGAV--PRFTNVY-------VKNLPKEITDDELKK 256
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG++G + SA V+ D+ G +R FGF++F S +A A +NG + V
Sbjct: 257 TFGKYGDISSAVVMKDQSG-NSRSFGFVNFESPEAAAVAVEKMNGISLGEDVLYVGRAQK 315
Query: 281 RTE 283
++E
Sbjct: 316 KSE 318
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 101/225 (44%), Gaps = 38/225 (16%)
Query: 63 DEEAVVVEDEING---KDN---VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISEL 116
+E A D++NG D VG D S E + R +YV NLP+ EL
Sbjct: 195 EETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPRFTNVYVKNLPKEITDDEL 254
Query: 117 LEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG------GR- 169
+ F +G + S V ++ ++G SR G++ S +A A+ ++G +G GR
Sbjct: 255 KKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFESPEAAAVAVEKMNGISLGEDVLYVGRA 313
Query: 170 --------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
E+R +F + SR + LY+ NL +V E L+
Sbjct: 314 QKKSEREEELRRKFEQERISRFEKLQG--------------SNLYLKNLDDSVNDEKLKE 359
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F +G V S +V+ + +G +R FGF+++SS E ALS +NG
Sbjct: 360 MFSEYGNVTSCKVMMNSQG-LSRGFGFVAYSSPEEASRALSEMNG 403
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S + +L EMF +G V S +V N + G+SRG G++ S A A+ +
Sbjct: 343 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSSPEEASRALSEM 401
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G +G + + V F+ R + + L +
Sbjct: 402 NGKMIGRKPLYVAFAQRKEERRAHLQTLFT 431
>gi|195351033|ref|XP_002042041.1| GM26763 [Drosophila sechellia]
gi|194123865|gb|EDW45908.1| GM26763 [Drosophila sechellia]
Length = 816
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 319 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 366
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 367 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 426
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 427 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 469
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 470 LRDQNGQ-SKGCAFVTF---ATKHAAIS 493
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 732 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 791
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 792 AMNGFQVGTKRLKVQLKKPKDSK 814
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 734 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 793
Query: 264 NG 265
NG
Sbjct: 794 NG 795
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHV 209
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V +D R
Sbjct: 210 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NIYVKNIQLDVTDDDFRA 260
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG V S+ + D++ +R FGF++F+S + A+ LN +F G+ + V
Sbjct: 261 LFEKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQK 320
Query: 281 RTE 283
+ E
Sbjct: 321 KHE 323
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ P++ A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 52 SAAPHPQASA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 108
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ + + A+ L+ + + GR R+ +S + + + +++
Sbjct: 109 YNTTSDGEKALDELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 153
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A +NG
Sbjct: 154 KNLDVAIDNKALHDTFAAFGNILSCKVAQDEHG-NSKGYGFVHYETDEAASQAIKHVNGM 212
Query: 267 DFRGRTIIV 275
+ + V
Sbjct: 213 LLNEKKVYV 221
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ + +F
Sbjct: 213 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNIYVKNIQLDVTDDDFRALF 262
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ FG V S ++R+ ETG SRG G++ S A A+ L+ + G+ + V + +
Sbjct: 263 EKFGHVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKH 322
Query: 181 SRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
R R+ EA +K Y+ + LY+ NL V + LR F FG + SA+V+
Sbjct: 323 EREEELRRSYEAARQ--EKASKYQGVN-LYIKNLDDEVDDDKLRQLFSEFGPITSAKVMR 379
Query: 237 D 237
+
Sbjct: 380 E 380
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQXXXXXM 219
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 276
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 277 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 329
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL D L + F PFGT+ S +V E G S+G G++ S A
Sbjct: 257 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 314
Query: 155 KNAIIALDGSDVGGREMRV 173
A+ ++G V + + V
Sbjct: 315 TKAVTEMNGRIVATKPLYV 333
>gi|388578824|gb|EIM19158.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 430
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 11/177 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+++V L + D L F+ G V + V + ++G SRG GY+ S A A+
Sbjct: 206 QIFVGQLSWNIDDDWLKSEFEQLGPVKTARVQLDRQSGRSRGFGYVEFESHELAVKAMDQ 265
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF---VYESPHKLYVGNLSWAVKPE 217
G ++ GR +RV S+ R N E K F + + L++GNLS+ +
Sbjct: 266 FAGKEIDGRPVRVDLSV---PRAPNPEKRA----KSFGDQRSDPSNTLFIGNLSFNTNED 318
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTI 273
+ FG FG+V S RV DR+ + FG++SF+ D + A G++ GR I
Sbjct: 319 RVWEFFGEFGSVESVRVPTDRETGAPKGFGYVSFADVDTAKAAIDGAAGSELDGRVI 375
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE---EPRSRAR--------PCE- 101
GF V E AV D+ GK+ + G V D SV P RA+ P
Sbjct: 247 GFGYVEFESHELAVKAMDQFAGKE-IDGRPVRVDLSVPRAPNPEKRAKSFGDQRSDPSNT 305
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ NL SF+ +E + E F FG+V SV V + ETG +G GY++ +++AK AI
Sbjct: 306 LFIGNL--SFNTNEDRVWEFFGEFGSVESVRVPTDRETGAPKGFGYVSFADVDTAKAAID 363
Query: 160 ALDGSDVGGREMRVRFS 176
GS++ GR +R+ FS
Sbjct: 364 GAAGSELDGRVIRLDFS 380
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
+++VG LSW + + L++ F + G V +ARV DR+ +R FG++ F S A+
Sbjct: 206 QIFVGQLSWNIDDDWLKSEFEQLGPVKTARVQLDRQSGRSRGFGYVEFESHELAVKAMDQ 265
Query: 263 LNGTDFRGRTIIVREGVDRT 282
G + GR + V V R
Sbjct: 266 FAGKEIDGRPVRVDLSVPRA 285
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D + L E+F FG LSV+V + TG S+G G++ A+ A+ +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-NTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ GR + R + ++ S R E + +++ Y+ + LYV NL + E
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQ--ERVSRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 RLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ + S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR +R+ +S R+ S +F + NL ++ + L
Sbjct: 71 TMNFEVIKGRPVRIMWS------QRDPGLRKSGVGNVF---------IKNLDDSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREG 278
+ F FG ++S +V+ D G +R GF+ F + +A A ++NG R + V
Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRKE 178
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 89/183 (48%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 140 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 198
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V E+ R
Sbjct: 199 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYVKNIDPEVTDEEFRE 249
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
FG++G + SA + D G+ +R FGF+++ +A+ LN DF + + V
Sbjct: 250 LFGKYGDITSATISRDDSGK-SRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQK 308
Query: 281 RTE 283
+ E
Sbjct: 309 KHE 311
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 10/160 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ E E+F +G + S +SR+ ++G SRG G
Sbjct: 218 DRQSKFEE--MKANFTNVYVKNIDPEVTDEEFRELFGKYGDITSATISRD-DSGKSRGFG 274
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYE 200
++ +A++A+ L+ D +++ V + + R R EA + +K Y+
Sbjct: 275 FVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQKKHEREEELRRQYEA--ARLEKASKYQ 332
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG 240
+ LYV NL+ V + LR F FGT+ SA+V+ D G
Sbjct: 333 GVN-LYVKNLTDDVDDDKLRELFSPFGTITSAKVMRDTVG 371
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 89/207 (42%), Gaps = 17/207 (8%)
Query: 78 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
NV + D++ ++ LYV L S + L E+F G V S+ V R+ T
Sbjct: 28 NVAPDTATSDAATTPNPNQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVT 87
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
S G Y+ + + A+ L+ + + GR R+ +S + + +
Sbjct: 88 RRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRIMWSQRDPALRKTGQG--------- 138
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAE 256
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + +++A
Sbjct: 139 ------NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAA 191
Query: 257 RDAALSLNGTDFRGRTIIVREGVDRTE 283
+A +NG + + V + + +
Sbjct: 192 NNAIKHVNGMLLNDKKVFVGHHISKKD 218
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 37/198 (18%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L E+F FG SV V + E+G RG G+++ +
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTD-ESGGGRGFGFVSFENHED 243
Query: 154 AKNAIIALDGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFV 198
A+ A+ ++G ++ GR E++ RF RT + +
Sbjct: 244 AQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGV--------- 294
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
LYV NL + E LR F FG++ SA+V+ + G ++ FGF+ FSS E
Sbjct: 295 -----NLYVKNLDDGIDDERLRKEFSPFGSITSAKVMME--GGRSKGFGFVCFSSPEEAT 347
Query: 259 AALSLNGTDFRGRTIIVR 276
A+ T+ GR + +
Sbjct: 348 KAV----TEMNGRIVATK 361
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGQPVRIMWSQRDPSLRKSGVG---------------NIFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V+ D G +R +GF+ F + DA A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFV 170
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + +E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFG++ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|2231301|gb|AAB61993.1| testis-specific RNP-type RNA binding protein [Drosophila
melanogaster]
Length = 808
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 323 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 370
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 371 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 430
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 431 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 473
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 474 LRDQNGQ-SKGCAFVTF---ATKHAAIS 497
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 724 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 783
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 784 AMNGFQVGTKRLKVQLKKPKDSK 806
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 726 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 785
Query: 264 NG 265
NG
Sbjct: 786 NG 787
>gi|226492336|ref|NP_001150253.1| ribonucleoprotein [Zea mays]
gi|195637832|gb|ACG38384.1| ribonucleoprotein [Zea mays]
Length = 275
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 14/178 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L N+P E+ +F+ G+V+ VE+S +RG ++TMGS A A+ L
Sbjct: 73 LVAQNIPWDCTADEMRALFESHGSVVGVELSMY-SANKNRGLAFVTMGSEEEALAALTHL 131
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPEDL 219
+ + + R+++V F+ R R + P + V ++ K ++VGNL+W V+ L
Sbjct: 132 NSTILNDRKIKVDFA-----RPRKKQ----PKQPAVVSDATEKYVVFVGNLTWRVRNRHL 182
Query: 220 RNHFGRFGTVVSARVL-HDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
R F VVSA V+ H + + + F+SFSS AA+S NG GR I V
Sbjct: 183 RELFASAPGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINV 240
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 239 ELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 297
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNG 412
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 63 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 122
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 123 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDKSI 167
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +G +
Sbjct: 168 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 225
Query: 274 IV 275
V
Sbjct: 226 FV 227
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L S D L F P G V+S V T SRG GY+ I+ A+ A+
Sbjct: 148 PATLFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKAL 207
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI--FVYESPHKLYVGNLSWAVKP 216
+ G ++ GR + V DM++ A KK E L++GNLS+
Sbjct: 208 KEMQGKEIDGRPINV----DMSTSKPAGGASNDRAKKFGDVPSEPSDTLFLGNLSFDADR 263
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
++L FG+FG ++S R+ + + + FG++ +++ + AL +L G R +
Sbjct: 264 DNLYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQGESINDRPV 321
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ P L+VG LSW+V E L+N F G VVSARV+ +R +R +G++ F + +
Sbjct: 146 QEPATLFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEK 205
Query: 260 ALS-LNGTDFRGRTIIV 275
AL + G + GR I V
Sbjct: 206 ALKEMQGKEIDGRPINV 222
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 72 EINGKDNVGGNEVDDDSSVEEP-----RSRAR-----PCE----LYVCNLPRSFDISELL 117
E+ GK+ + G ++ D S +P RA+ P E L++ NL D L
Sbjct: 209 EMQGKE-IDGRPINVDMSTSKPAGGASNDRAKKFGDVPSEPSDTLFLGNLSFDADRDNLY 267
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
E+F FG ++SV + +PET +G GY+ + AK A+ AL G + R +R+ FS
Sbjct: 268 EIFGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQGESINDRPVRLDFS 326
>gi|297620951|ref|YP_003709088.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|297376252|gb|ADI38082.1| RNA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|337293226|emb|CCB91217.1| putative RNA-binding protein rbpA [Waddlia chondrophila 2032/99]
Length = 92
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALS 262
KLYVGNLS+ V + +++F FG V+SA+++ DR ++ FGF+ F+ +A +A
Sbjct: 2 KLYVGNLSYRVSEDQFKDYFASFGEVLSAKIITDRFTGQSKGFGFVEFADKEAAEEAIKE 61
Query: 263 LNGTDFRGRTIIVRE 277
LNG++F GR+I+V E
Sbjct: 62 LNGSNFEGRSIVVNE 76
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+LYV NL + + F FG VLS ++ + TG S+G G++ +A+ AI
Sbjct: 1 MKLYVGNLSYRVSEDQFKDYFASFGEVLSAKIITDRFTGQSKGFGFVEFADKEAAEEAIK 60
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
L+GS+ GR + V + M R
Sbjct: 61 ELNGSNFEGRSIVVNEAKPMEDR 83
>gi|195472345|ref|XP_002088461.1| GE18580 [Drosophila yakuba]
gi|194174562|gb|EDW88173.1| GE18580 [Drosophila yakuba]
Length = 830
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 333 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 380
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 381 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 440
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 441 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 483
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 484 LRDQNGQ-SKGCAFVTF---ATKHAAIS 507
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 746 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 805
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 806 AMNGFQVGTKRLKVQLKKPKDSK 828
Score = 41.2 bits (95), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 748 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 807
Query: 264 NG 265
NG
Sbjct: 808 NG 809
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 7/167 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ +G SRG G++ A+ A+ +
Sbjct: 193 IYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRD-NSGHSRGFGFVNFEKHEEAQKAVDHM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G +V G+++ V + R + K + Y+ + LYV NL ++ E L
Sbjct: 252 NGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVN-LYVKNLDDSISDEKL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
R F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 311 RTVFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V+ + E G SRG G++ + +A+ AI +
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETNEAAQQAISTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F S R EA + F +YV NL + + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSH-REREAELGAQALAFT-----NIYVKNLHVDMDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R FGF++F E A+ +NG + G+ + V
Sbjct: 210 LFFEFGKMLSVKVMRDNSGH-SRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQK 268
Query: 281 RTE 283
R E
Sbjct: 269 RGE 271
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNVF---------IKNLEDSIDSKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G +R FGF+ F +++A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFV 170
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 18/142 (12%)
Query: 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGG--------------NEVDD--DSSVEEPR 94
H GF V EEA D +NGK+ G NE+ + ++ +
Sbjct: 229 HSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQ 288
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S +L +F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGCIVGTKPLYVALA 368
>gi|324511674|gb|ADY44854.1| RNA-binding protein Musashi Rbp6 [Ascaris suum]
Length = 345
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++++ L L + F FG V V R+P T +RG G++T S + +
Sbjct: 43 PGKMFIGGLSWQTTAEGLRDYFGKFGEVNECMVMRDPATKRARGFGFITFADPASVEK-V 101
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+A D ++ G+++ + + ++ + +I KK+F+ G LS ED
Sbjct: 102 LAHDQHELDGKKIDPKVAFPKRAQPK----MIIKTKKVFI---------GGLSATSTLED 148
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVRE 277
+RN+F ++G V A ++ D+ Q R FGFI+F +D D ++ + G+ + ++
Sbjct: 149 MRNYFEQYGKVEDAMLMFDKTTQRHRGFGFITFDNDDVSDKVCEIHFHEINGKMVECKK 207
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + ++ R
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDSEIDDDEFRK 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +FG + SA + D++G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 254 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYV 307
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL D E +MF+ FG + S +SR+ E G SRG G
Sbjct: 222 DRQSKFEE--MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFG 278
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 279 FVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 338
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR FG +GT+ SA+V+ D
Sbjct: 339 N-LYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S + + + +++ NL A+ + L +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAIDNKALHD 160
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ + +++A +A +NG + + V +
Sbjct: 161 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS 219
Query: 281 RTE 283
+ +
Sbjct: 220 KKD 222
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L ++F +G +S+ V + E G SRG G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G ++ G+ + V R + +T + LYV NL + E LR
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
F FGT+ SA+V+ D G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 312 KEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 18/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV 170
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V + G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--DGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRV 173
+ + V
Sbjct: 360 TKPLYV 365
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L +++ Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQ--ERLSRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG + SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGAITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + DA A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGKD G +V+ + + +E SR
Sbjct: 232 GFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG + S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGAITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 350 VTEMNGRIVGSKPLYVALA 368
>gi|327301915|ref|XP_003235650.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326463002|gb|EGD88455.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 149
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+P KL++G L+W + LR F +FGT+ A V+ DR +R FGF+ FSSD+E DAA
Sbjct: 2 APPKLFIGGLAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAA 61
Query: 261 L-SLNGTDFRGRTIIV 275
L ++N +F GR I V
Sbjct: 62 LNAMNNQEFDGRVIRV 77
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +L++ L L E F FGT+ V ++ +T SRG G++ S + A A+
Sbjct: 3 PPKLFIGGLAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAAL 62
Query: 159 IALDGSDVGGREMRV 173
A++ + GR +RV
Sbjct: 63 NAMNNQEFDGRVIRV 77
>gi|194696360|gb|ACF82264.1| unknown [Zea mays]
gi|414869196|tpg|DAA47753.1| TPA: ribonucleoprotein [Zea mays]
Length = 275
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 10/176 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L N+P E+ +F+ G+V+ VE+S +RG ++TMGS A A+ L
Sbjct: 73 LVAQNIPWDCTADEMRALFESHGSVVGVELSMY-SANKNRGLAFVTMGSEEEALAALTHL 131
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R+++V F+ + + A++S + +V ++VGNL+W V+ LR
Sbjct: 132 NSTILNDRKIKVDFARPRKKQPKQP-AVVSDDTEKYV------VFVGNLTWRVRNRHLRE 184
Query: 222 HFGRFGTVVSARVL-HDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
F VVSA V+ H + + + F+SFSS AA+S NG GR I V
Sbjct: 185 LFASAPGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKILMGRPINV 240
>gi|255692575|ref|ZP_05416250.1| RNA-binding protein [Bacteroides finegoldii DSM 17565]
gi|423300001|ref|ZP_17278026.1| hypothetical protein HMPREF1057_01167 [Bacteroides finegoldii
CL09T03C10]
gi|260621722|gb|EEX44593.1| hypothetical protein BACFIN_07718 [Bacteroides finegoldii DSM
17565]
gi|408473810|gb|EKJ92332.1| hypothetical protein HMPREF1057_01167 [Bacteroides finegoldii
CL09T03C10]
Length = 81
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
LY+GNLS+ VK DLRN +GTV S +++ DR+ + ++ F FI D E + A+ L
Sbjct: 3 LYIGNLSYNVKESDLRNVMEEYGTVASVKLITDRETRRSKGFAFIEMPDDTEANNAIKQL 62
Query: 264 NGTDFRGRTIIVREGVDRT 282
NG ++ GR+++V+E + R
Sbjct: 63 NGAEYVGRSMVVKEALPRN 81
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL + S+L + + +GTV SV++ + ET S+G ++ M A NAI L
Sbjct: 3 LYIGNLSYNVKESDLRNVMEEYGTVASVKLITDRETRRSKGFAFIEMPDDTEANNAIKQL 62
Query: 162 DGSDVGGREMRVRFSIDMN 180
+G++ GR M V+ ++ N
Sbjct: 63 NGAEYVGRSMVVKEALPRN 81
>gi|326474784|gb|EGD98793.1| glycine-rich RNA-binding protein [Trichophyton tonsurans CBS
112818]
Length = 149
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+P KL++G L+W + LR F +FGT+ A V+ DR +R FGF+ FSSD+E DAA
Sbjct: 2 APPKLFIGGLAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAA 61
Query: 261 L-SLNGTDFRGRTIIV 275
L ++N +F GR I V
Sbjct: 62 LNAMNNQEFDGRVIRV 77
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +L++ L L E F FGT+ V ++ +T SRG G++ S + A A+
Sbjct: 3 PPKLFIGGLAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAAL 62
Query: 159 IALDGSDVGGREMRV 173
A++ + GR +RV
Sbjct: 63 NAMNNQEFDGRVIRV 77
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQDVTEEEFRE 248
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +FG + SA + D++G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 249 LFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYV 302
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E E+F+ FG + S +SR+ E G SRG G
Sbjct: 217 DRQSKFEE--MKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 333
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR FG +GT+ SA+V+ D
Sbjct: 334 N-LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 44 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 103
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 104 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAI 148
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 149 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 274 IVREGVDRTE 283
V + + +
Sbjct: 208 FVGHHISKKD 217
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 17/198 (8%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P SR + +++ NL +S D L + F FG +LS +V+ +G S+G G++
Sbjct: 115 SNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVATE-MSGESKGYGFVQ 173
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+A+NAI L+G + +++ V + R + E + PK + +YV
Sbjct: 174 FELEEAAQNAISKLNGMLLNDKKVYVGPFV----RKQERENVSGNPKF-------NNVYV 222
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
NLS + ++L+ FG+FG + S V+ + G+ +R FGF++F + DA R A LNG
Sbjct: 223 KNLSESTTEDNLKEIFGKFGPITSVVVMREGDGK-SRCFGFVNFENPDDAAR-AVEDLNG 280
Query: 266 TDFRGRTIIVREGVDRTE 283
F + V ++E
Sbjct: 281 KKFDDKEWYVCRAQKKSE 298
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 19/184 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G+V+SV V R+ T +S G Y+ S A A+ L
Sbjct: 41 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEML 100
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + + G+ +R+ +S D +SR A +++ NL ++ + L
Sbjct: 101 NFTPINGKPIRIMYSNRDPSSRKSGA----------------ANIFIKNLDKSIDNKALY 144
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGV 279
+ F FG ++S +V + G+ ++ +GF+ F +A ++A LNG + + V V
Sbjct: 145 DTFSVFGNILSCKVATEMSGE-SKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFV 203
Query: 280 DRTE 283
+ E
Sbjct: 204 RKQE 207
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELL-EMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ +++E + + LY+ NL S D E L E+F FGT+ S +V R+ G+S+G G+
Sbjct: 308 EKNIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRD-LNGVSKGSGF 366
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ S A A++A++G +G + + V + R +A S
Sbjct: 367 VAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFS 412
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + V + R R E L +++ Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQ--ERLSRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRA 97
GF V EEA +E+NGKD VG + + E R SR
Sbjct: 232 GFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 350 VTEMNGRIVGSKPLYVALA 368
>gi|388567211|ref|ZP_10153648.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
gi|388265594|gb|EIK91147.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
Length = 97
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
KLYVGNL ++V + LR++F FG V SA+V+ DR ++ FGF+ +S+AE AA++
Sbjct: 4 KLYVGNLPYSVNDDSLRHNFSEFGNVASAKVMTDRDSGRSKGFGFVEMASEAEAQAAING 63
Query: 263 LNGTDFRGRTIIV 275
LNG GR I+V
Sbjct: 64 LNGQSVDGRQIVV 76
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+LYV NLP S + L F FG V S +V + ++G S+G G++ M S A+ AI
Sbjct: 3 SKLYVGNLPYSVNDDSLRHNFSEFGNVASAKVMTDRDSGRSKGFGFVEMASEAEAQAAIN 62
Query: 160 ALDGSDVGGREMRVRFS 176
L+G V GR++ V S
Sbjct: 63 GLNGQSVDGRQIVVNVS 79
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
K+YVGNLS+ V +DLR F + G V S +++D+ ++ FGF+ SSDAE AA+
Sbjct: 2 KIYVGNLSYEVNEDDLRQAFEQLGKVDSVSIINDKYSGRSKGFGFVEMSSDAEAQAAIEG 61
Query: 263 LNGTDFRGRTIIVRE 277
LNG + +GR I V E
Sbjct: 62 LNGKELKGRAINVNE 76
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NL + +L + F+ G V SV + + +G S+G G++ M S A+ AI
Sbjct: 1 MKIYVGNLSYEVNEDDLRQAFEQLGKVDSVSIINDKYSGRSKGFGFVEMSSDAEAQAAIE 60
Query: 160 ALDGSDVGGREMRV 173
L+G ++ GR + V
Sbjct: 61 GLNGKELKGRAINV 74
>gi|19112906|ref|NP_596114.1| RNA-binding protein (predicted) [Schizosaccharomyces pombe 972h-]
gi|74676076|sp|O74400.1|YOCE_SCHPO RecName: Full=Uncharacterized RNA-binding protein C4F6.14
gi|3560147|emb|CAA20734.1| RNA-binding protein (predicted) [Schizosaccharomyces pombe]
Length = 674
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +L F G + V NPETG +RG G++T + A+ A L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV-KPEDLR 220
+ GR +R+ F+ + + + K I P +L + NL W++ KP+ L
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRP-RLIIRNLPWSIKKPQHLE 125
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
HF +FG V ++ G+ F F+ A +A SLNGT+ GR I V
Sbjct: 126 PHFSKFGKVREIKIPTKGGGRMC-GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV NL V E+ R
Sbjct: 203 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNLEPEVTNEEFRE 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G + SA + D + +R FGF++F + D+ A LN +++G+ + V
Sbjct: 254 LFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQK 313
Query: 281 RTE 283
+ E
Sbjct: 314 KHE 316
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 19/185 (10%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV NL E E+F
Sbjct: 206 LLNEKKVFVGHHIAKKDR--------QSKFEE--MKANFTNVYVKNLEPEVTNEEFRELF 255
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-----RF 175
+ +G + S +SR+ ETG SRG G++ + +SA A+ L+ + G+++ V +
Sbjct: 256 EKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKH 315
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
+ R ++ A + K Y+ + LYV NL+ + E LR+ F FG + SARV+
Sbjct: 316 EREEELRKQHEAARVEKASK---YQGVN-LYVKNLTDDIDDEKLRDLFIGFGNITSARVM 371
Query: 236 HDRKG 240
D G
Sbjct: 372 RDTIG 376
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 17/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 56 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S + + + +++ NL A+ + L +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKALHD 160
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F FG ++S +V D G ++ +GF+ + +++A +A +NG + + V
Sbjct: 161 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 214
>gi|344228938|gb|EGV60824.1| hypothetical protein CANTEDRAFT_96267 [Candida tenuis ATCC 10573]
Length = 909
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 26/191 (13%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R C L+VCN P S D ++L+++F+P+GTV+ V + R Y+ A+
Sbjct: 610 RMSHCILWVCNFPPSMDKTKLIKVFEPYGTVIDVRLPFQNSQHRQRRFAYIEYAEGEQAR 669
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS-------PPKKIFVYESPHKLYVG 208
A+ L+G + D+N T A S PP +F ++YVG
Sbjct: 670 AAVSQLNGKMLHD---------DLNDSTYKLVAKFSDNSAERGPP--VF----KRQIYVG 714
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARV----LHDRKGQTTRVFGFISFSSDAERDAALSLN 264
N+ + +R F +G V + + +G +GF+ F S+ AL+ +
Sbjct: 715 NIPYDTTTAQVREFFQVYGRVENVTLPISTQTKERGHMNSGYGFVLFQSETSIAQALTAD 774
Query: 265 GTDFRGRTIIV 275
G+ FR R I V
Sbjct: 775 GSSFRDRIIKV 785
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 239 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 297
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNG 412
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 63 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 122
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 123 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDKSI 167
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +G +
Sbjct: 168 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 225
Query: 274 IV 275
V
Sbjct: 226 FV 227
>gi|299531903|ref|ZP_07045303.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
gi|298720078|gb|EFI61035.1| RNA-binding protein RNP-3 [Comamonas testosteroni S44]
Length = 162
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ DL F +FG V SARV+ +R ++ FGF+ +S+AE AA+
Sbjct: 3 NKLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQ 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSLVVNE 78
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP ++L + F FG V S V +TG S+G G++ M S A+ AI
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSLVVNEARPMEPR 85
>gi|264680852|ref|YP_003280762.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
gi|262211368|gb|ACY35466.1| RNA-binding protein RNP-3 [Comamonas testosteroni CNB-2]
Length = 164
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ DL F +FG V SARV+ +R ++ FGF+ +S+AE AA+
Sbjct: 3 NKLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQ 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSLVVNE 78
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP ++L + F FG V S V +TG S+G G++ M S A+ AI
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSLVVNEARPMEPR 85
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 93/183 (50%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D + + F FG +LS +V + E G+++G G++ + +A AI +
Sbjct: 101 VFIKNLDKSIDNKAMYDTFSAFGHILSCKVVTD-ENGVNKGYGFVHFETQEAANKAIEKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V + I R + +K F +++ NL+ V L
Sbjct: 160 NGMLLNGKKVYVGYFIPRKERLMQ----MGDHQKQFT-----NVFIKNLAEDVDDGKLAE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
G++G+++SA+++ D ++ FGFISF +A D ++NG++ GRT+
Sbjct: 211 FGGQYGSILSAKIMFDDS--KSKGFGFISFEDHEAANDFVKTINGSEVNGRTLYAGRAQK 268
Query: 281 RTE 283
+ E
Sbjct: 269 KAE 271
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 36/190 (18%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D +L E +G++LS ++ + S+G G+++ +A + + +
Sbjct: 194 VFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFDDSK--SKGFGFISFEDHEAANDFVKTI 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+GS+V GR E++ RF R+ + + LY
Sbjct: 252 NGSEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+ NL + E LR F R+GT+ SA+V+ D K ++ FGF+ FSS E A+ T
Sbjct: 298 IKNLDDEIDDERLRKEFSRYGTITSAKVMSDDKA-NSKGFGFVCFSSPEEATKAV----T 352
Query: 267 DFRGRTIIVR 276
+ GR ++ +
Sbjct: 353 EMNGRILVAK 362
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL ++ + + +
Sbjct: 73 NFDTLKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G + +GF+ F + +A A +NG G+ + V +
Sbjct: 118 TFSAFGHILSCKVVTDENG-VNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIP 176
Query: 281 RTE 283
R E
Sbjct: 177 RKE 179
>gi|452001822|gb|EMD94281.1| hypothetical protein COCHEDRAFT_1094167 [Cochliobolus
heterostrophus C5]
Length = 501
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 85/194 (43%), Gaps = 14/194 (7%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
+ +EP + L+V NL + D L F+ FG ++ V + ETG ++G GY+
Sbjct: 236 TKTDEPVAEDGVKNLFVGNLSWNIDEDWLRREFESFGEIVGCRVITDRETGRAKGFGYVE 295
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSI-----DMNSRTRNAEALISPPKKIFVYESP 202
A A + ++ GR + V FS D N+R S P
Sbjct: 296 FAKAADAAKAQKDMHEYELDGRPLNVDFSTPRQKPDANARANKFGDKRSAPS-------- 347
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
+ L++GNLS+ E ++ F +G V + DR + FG++ F S E AAL
Sbjct: 348 NTLFIGNLSFDCTNETIQEVFAEYGNVTRVSLPTDRDSGALKGFGYVDFGSQEEATAALE 407
Query: 262 SLNGTDFRGRTIIV 275
+L G D GR + V
Sbjct: 408 ALQGQDVAGRPLRV 421
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ NL SFD + + E+F +G V V + + ++G +G GY+ GS A A+
Sbjct: 350 LFIGNL--SFDCTNETIQEVFAEYGNVTRVSLPTDRDSGALKGFGYVDFGSQEEATAALE 407
Query: 160 ALDGSDVGGREMRVRFS 176
AL G DV GR +RV F+
Sbjct: 408 ALQGQDVAGRPLRVDFA 424
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 181 SRTRNAEALISPPKKIFVYESP------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
S+ R AE + P K + P L+VGNLSW + + LR F FG +V RV
Sbjct: 220 SKKRKAEEVAEPVIKKTKTDEPVAEDGVKNLFVGNLSWNIDEDWLRREFESFGEIVGCRV 279
Query: 235 LHDRKGQTTRVFGFISF 251
+ DR+ + FG++ F
Sbjct: 280 ITDRETGRAKGFGYVEF 296
>gi|451850002|gb|EMD63305.1| hypothetical protein COCSADRAFT_161812 [Cochliobolus sativus
ND90Pr]
Length = 489
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
+ +EP + L+V NL + D L F+ FG ++ V + ETG ++G GY+
Sbjct: 223 TKTDEPVAEDGVKNLFVGNLSWNIDEDWLRREFESFGEIVGCRVITDRETGRAKGFGYVE 282
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSI-----DMNSRTRNAEALISPPKKIFVYESP 202
A A + ++ GR + V FS D N+R S P
Sbjct: 283 FAKAADAAKAQKDMHEYELDGRPLNVDFSTPRQKPDANARANKFGDKRSAPS-------- 334
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
+ L++GNLS+ E ++ F +G V + DR + FG++ F S E AAL
Sbjct: 335 NTLFIGNLSFDCTNETIQEVFAEYGNVTRVSLPTDRDSGALKGFGYVDFGSQEEATAALE 394
Query: 262 SLNGTDFRGRTIIV 275
+L+G D GR + V
Sbjct: 395 ALHGQDVAGRPLRV 408
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ NL SFD + + E+F +G V V + + ++G +G GY+ GS A A+
Sbjct: 337 LFIGNL--SFDCTNETIQEVFAEYGNVTRVSLPTDRDSGALKGFGYVDFGSQEEATAALE 394
Query: 160 ALDGSDVGGREMRVRFS 176
AL G DV GR +RV F+
Sbjct: 395 ALHGQDVAGRPLRVDFA 411
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 181 SRTRNAEALISPPKKIFVYESP------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
S+ R AE + P K + P L+VGNLSW + + LR F FG +V RV
Sbjct: 207 SKKRKAEEVAEPVIKKTKTDEPVAEDGVKNLFVGNLSWNIDEDWLRREFESFGEIVGCRV 266
Query: 235 LHDRKGQTTRVFGFISF 251
+ DR+ + FG++ F
Sbjct: 267 ITDRETGRAKGFGYVEF 283
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV NL V E+ R
Sbjct: 203 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNLEPEVTNEEFRE 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F ++G + SA + D + +R FGF++F + D+ A LN +++G+ + V
Sbjct: 254 LFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYV 308
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 11/158 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV NL E E+F+ +G + S +SR+ ETG SRG G
Sbjct: 222 DRQSKFEE--MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFG 279
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVY 199
++ + +SA A+ L+ + G+++ V + + R ++ A + +K Y
Sbjct: 280 FVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARV---EKASKY 336
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ + LYV NL+ + E LR+ F FG + SARV+ D
Sbjct: 337 QGVN-LYVKNLTDDIDDEKLRDLFIGFGNITSARVMRD 373
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 82/184 (44%), Gaps = 19/184 (10%)
Query: 95 SRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
+ A+P LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 47 TNAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 106
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ A+ L+ + + G+ R+ +S + + + +++ NL
Sbjct: 107 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDT 151
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGR 271
A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 152 AIDNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAATNAIKHVNGMLLNEK 210
Query: 272 TIIV 275
+ V
Sbjct: 211 KVFV 214
>gi|195578717|ref|XP_002079210.1| GD23828 [Drosophila simulans]
gi|194191219|gb|EDX04795.1| GD23828 [Drosophila simulans]
Length = 821
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 324 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 371
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 372 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 431
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 432 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 474
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 475 LRDQNGQ-SKGCAFVTF---ATKHAAIS 498
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 737 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 796
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 797 AMNGFQVGTKRLKVQLKKPKDSK 819
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 739 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 798
Query: 264 NG 265
NG
Sbjct: 799 NG 800
>gi|169832010|ref|YP_001717992.1| RNP1-like RNA-binding protein [Candidatus Desulforudis audaxviator
MP104C]
gi|169638854|gb|ACA60360.1| RNP1-like RNA-binding protein [Candidatus Desulforudis audaxviator
MP104C]
Length = 89
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVGNL W K EDL FG +G VVS+R++ DR+ +R FGF+ + +LN
Sbjct: 5 LYVGNLPWGTKAEDLDEAFGAYGEVVSSRIITDRQTGRSRGFGFVEVKDEDAETMINALN 64
Query: 265 GTDFRGRTIIVREGVDRTES 284
GT+F GR I V E R ++
Sbjct: 65 GTEFGGRIITVNEARARDDN 84
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP +L E F +G V+S + + +TG SRG G++ + A+ I AL
Sbjct: 5 LYVGNLPWGTKAEDLDEAFGAYGEVVSSRIITDRQTGRSRGFGFVEVKD-EDAETMINAL 63
Query: 162 DGSDVGGR 169
+G++ GGR
Sbjct: 64 NGTEFGGR 71
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
gi|297323759|gb|EFH54180.1| hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp.
lyrata]
Length = 339
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
++LYVGNLSW V L N F G VV ARV++DR ++ FGF++ SS E A+
Sbjct: 254 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 313
Query: 262 SLNGTDFRGRTIIVREGVDR 281
SLNG D GR I V E R
Sbjct: 314 SLNGADLDGRQIRVSEAEAR 333
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL D L +F G V+ V + ++G S+G G++T+ S + AI +L
Sbjct: 256 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 315
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
+G+D+ GR++RV +EA PP+ F
Sbjct: 316 NGADLDGRQIRV------------SEAEARPPRGQF 339
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
DDS+ E S + +L+V NL + D ++L ++F+ G V VEV + TG SRG G+
Sbjct: 85 DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRV 173
+TM + + A +G + GR +RV
Sbjct: 145 VTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VGNLS+ V L F G V V++D+ +R FGF++ S+ AA
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 263 LNGTDFRGRTIIVREG 278
NG +F GR + V G
Sbjct: 160 FNGYEFEGRPLRVNAG 175
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
++LYVGNLSW V L N F G VV ARV++DR ++ FGF++ SS E A+
Sbjct: 241 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 300
Query: 262 SLNGTDFRGRTIIVREGVDR 281
SLNG D GR I V E R
Sbjct: 301 SLNGADLDGRQIRVSEAEAR 320
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL D L +F G V+ V + ++G S+G G++T+ S + AI +L
Sbjct: 243 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 302
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
+G+D+ GR++RV +EA PP+ F
Sbjct: 303 NGADLDGRQIRV------------SEAEARPPRGQF 326
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
DDS+ E S + +L+V NL + D ++L ++F+ G V VEV + TG SRG G+
Sbjct: 77 DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 136
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRV 173
+TM + + A +G + GR +RV
Sbjct: 137 VTMSTAAEVEAAAQQFNGYEFEGRPLRV 164
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VGNLS+ V L F G V V++D+ +R FGF++ S+ AA
Sbjct: 92 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 151
Query: 263 LNGTDFRGRTIIVREG 278
NG +F GR + V G
Sbjct: 152 FNGYEFEGRPLRVNAG 167
>gi|418528344|ref|ZP_13094294.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
gi|371454720|gb|EHN67722.1| RNA-binding protein RNP-3 [Comamonas testosteroni ATCC 11996]
Length = 163
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ DL F +FG V SARV+ +R ++ FGF+ +S+AE AA+
Sbjct: 3 NKLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQ 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSLVVNE 78
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP ++L + F FG V S V +TG S+G G++ M S A+ AI
Sbjct: 4 KLYVGNLPYGVRDNDLEQAFSQFGAVASARVMMERDTGRSKGFGFVEMASEAEAQAAIQG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M R
Sbjct: 64 MNGQPLGGRSLVVNEARPMEPR 85
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A+ AI +
Sbjct: 113 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHEAAQQAINTM 170
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 171 NGMLLNDRKV---FVGHFKSR-REREAELGARALEFT-----NIYVKNLPVDVDEQGLQD 221
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVD 280
F +FG ++S +V+ D G +R FGF++F E + A + +NG + GR +
Sbjct: 222 LFSQFGKMLSVKVMRDNSGH-SRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 280
Query: 281 RTE 283
R E
Sbjct: 281 RVE 283
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 30/147 (20%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 205 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 263
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 264 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 309
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSAR 233
V NL ++ + LR F +G + SA+
Sbjct: 310 VKNLDDSIDDDKLRKEFSPYGVITSAK 336
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 28/194 (14%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI---SRGCGYLTMGSINSAKNAI 158
LYV +L + L E F P G +LS+ V R+ T R GY IN + A
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRFLPTRRSLGY---AYINFQQPA- 68
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL--------YVGNL 210
DG + R R ++D T N E L P +I + L ++ NL
Sbjct: 69 ---DGEEQAQRAER---ALD----TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNL 118
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFR 269
++ + L + F FG ++S +V+ D G +R FGF+ F + +A + A ++NG
Sbjct: 119 EDSIDNKALYDTFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLN 176
Query: 270 GRTIIVREGVDRTE 283
R + V R E
Sbjct: 177 DRKVFVGHFKSRRE 190
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645571|gb|AEE79092.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 363
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
++LYVGNLSW V L N F G VV ARV++DR ++ FGF++ SS E A+
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 262 SLNGTDFRGRTIIVREGVDR 281
SLNG D GR I V E R
Sbjct: 338 SLNGADLDGRQIRVSEAEAR 357
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL D L +F G V+ V + ++G S+G G++T+ S + AI +L
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 339
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
+G+D+ GR++RV +EA PP+ F
Sbjct: 340 NGADLDGRQIRV------------SEAEARPPRGQF 363
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
DDS+ E S + +L+V NL + D ++L ++F+ G V VEV + TG SRG G+
Sbjct: 85 DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144
Query: 146 LTM 148
+TM
Sbjct: 145 VTM 147
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
KL+VGNLS+ V L F G V V++D+ +R FGF++ S+
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>gi|393912245|gb|EJD76653.1| musashi [Loa loa]
Length = 336
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 15/201 (7%)
Query: 78 NVGGNE-VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE 136
N NE + S E+ S P ++++ L L + F FG V V R+P
Sbjct: 7 NANDNETIQQSPSSEDGTSSNDPGKMFIGGLSWQTTAEGLRDYFGKFGEVNECMVMRDPA 66
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI 196
T +RG G++T S + ++A + ++ G+++ + + ++++ +I KK+
Sbjct: 67 TKRARGFGFITFTDPASV-DKVLAQELHELDGKKIDPKVAFPKKAQSK----MIIKTKKV 121
Query: 197 FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
F+ G LS ED++N+F ++G V A ++ D+ Q R FGFI+F +D
Sbjct: 122 FI---------GGLSATSTLEDMKNYFEQYGKVEDAMLMFDKTTQRHRGFGFITFDNDDV 172
Query: 257 RDAALSLNGTDFRGRTIIVRE 277
D ++ + G+ + ++
Sbjct: 173 SDKVCEIHFHEINGKMVECKK 193
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 99/194 (51%), Gaps = 8/194 (4%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ ++ ++F P+G + S+ + ++ + G S+G G
Sbjct: 219 DRESKFEE--MKANFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKD-QDGKSKGFG 275
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 276 FVNFENHDSAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGV 335
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL A+ E L F FGT+ SA+V+ D G+ ++ FGF+ F++ E A++
Sbjct: 336 N-LFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGK-SKGFGFVCFTTPEEATKAIT 393
Query: 263 -LNGTDFRGRTIIV 275
+N G+ + V
Sbjct: 394 EMNTRMINGKPLYV 407
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + AI L
Sbjct: 53 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 112
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 113 NYTPIEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 157
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ + +++A A ++NG R + V + +
Sbjct: 158 TFSAFGKILSCKVAADEFGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHIS 216
Query: 281 RTE 283
+ +
Sbjct: 217 KKD 219
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|186511018|ref|NP_850692.2| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|334185948|ref|NP_001190078.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|30316379|sp|Q43349.2|ROC2_ARATH RecName: Full=29 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein cp29; Flags: Precursor
gi|6729497|emb|CAB67653.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|14532570|gb|AAK64013.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|18655393|gb|AAL76152.1| AT3g53460/F4P12_160 [Arabidopsis thaliana]
gi|21593426|gb|AAM65393.1| RNA-binding protein cp29 protein [Arabidopsis thaliana]
gi|332645568|gb|AEE79089.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645569|gb|AEE79090.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
gi|332645570|gb|AEE79091.1| chloroplast RNA-binding protein 29 [Arabidopsis thaliana]
Length = 342
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
++LYVGNLSW V L N F G VV ARV++DR ++ FGF++ SS E A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 262 SLNGTDFRGRTIIVREGVDR 281
SLNG D GR I V E R
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL D L +F G V+ V + ++G S+G G++T+ S + AI +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
+G+D+ GR++RV +EA PP+ F
Sbjct: 319 NGADLDGRQIRV------------SEAEARPPRGQF 342
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
DDS+ E S + +L+V NL + D ++L ++F+ G V VEV + TG SRG G+
Sbjct: 85 DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRV 173
+TM + + A +G + GR +RV
Sbjct: 145 VTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VGNLS+ V L F G V V++D+ +R FGF++ S+ AA
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 263 LNGTDFRGRTIIVREG 278
NG +F GR + V G
Sbjct: 160 FNGYEFEGRPLRVNAG 175
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
++LYVGNLSW V L N F G VV ARV++DR ++ FGF++ SS E A+
Sbjct: 249 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 308
Query: 262 SLNGTDFRGRTIIVREGVDR 281
SLNG D GR I V E R
Sbjct: 309 SLNGADLDGRQIRVSEAEAR 328
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL D L +F G V+ V + ++G S+G G++T+ S + AI +L
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
+G+D+ GR++RV +EA PP+ F
Sbjct: 311 NGADLDGRQIRV------------SEAEARPPRGQF 334
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
DDS+ E S + +L+V NL + D ++L ++F+ G V VEV + TG SRG G+
Sbjct: 85 DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRV 173
+TM + + A +G + GR +RV
Sbjct: 145 VTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VGNLS+ V L F G V V++D+ +R FGF++ S+ AA
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 263 LNGTDFRGRTIIVREG 278
NG +F GR + V G
Sbjct: 160 FNGYEFEGRPLRVNAG 175
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 11/169 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D L ++F FG LSV+V + E G S+G G+++ A+ A+ L
Sbjct: 161 VYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTD-ERGKSKGFGFVSFERGEDAQKAVDEL 219
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + KI Y+ + LYV L + E
Sbjct: 220 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQ--DKITRYQGLN-LYVKYLDDYIDDE 276
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 277 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 323
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 49/229 (21%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAERALDTM 72
Query: 162 DGSDVGGREMRVRFS------------IDMNS---------RTRNA--------EALISP 192
+ + G+ +R+ +S D N T+ A ++
Sbjct: 73 NFDVINGKSVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 132
Query: 193 PKKIFV--YESPHK--------------LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
+K+FV ++S + +YV N + E L++ FG+FG +S +V+
Sbjct: 133 DQKVFVGRFKSRKEREAELGARAKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMT 192
Query: 237 DRKGQTTRVFGFISFS--SDAERDAALSLNGTDFRGRTIIVREGVDRTE 283
D +G+ ++ FGF+SF DA++ A LNG + G+ I V + E
Sbjct: 193 DERGK-SKGFGFVSFERGEDAQK-AVDELNGKELSGKQIYVGRAQKKVE 239
Score = 41.2 bits (95), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 29/174 (16%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV L
Sbjct: 210 EDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYL 269
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 270 DDYIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGKIVA 327
Query: 168 GR-----------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ E + + + RT + A+ +P K + P ++ L
Sbjct: 328 TKPLYVALAQRKEERQAHLTNEHMHRTASVRAVPNPASKPYQPAPPSGYFMAAL 381
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 13/184 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + E G S+G G++ + +A AI ++
Sbjct: 151 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAVD-ELGNSKGYGFVHYETAEAASQAIKSV 209
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V ++ R
Sbjct: 210 NGMLLNEKKVFVGHHIPKKDRMSKFEEM----KANFT-----NIYVKNIETEVTDDEFRE 260
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTIIVREGV 279
F ++G + SA + HD + +R FGF+++ DA + A LN +DF G+ + V
Sbjct: 261 LFEKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYK-AVDELNDSDFHGQKLYVGRAQ 319
Query: 280 DRTE 283
+ E
Sbjct: 320 KKHE 323
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD + S EE +A +YV N+ E E+F
Sbjct: 213 LLNEKKVFVGHHIPKKDRM--------SKFEE--MKANFTNIYVKNIETEVTDDEFRELF 262
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S ++ + ETG SRG G++ + A A+ L+ SD G+++ V + +
Sbjct: 263 EKYGEITSASLAHDNETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKH 322
Query: 181 SRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
R + EA +K Y+ + LYV NL+ V E+LR F +G + SA+V+
Sbjct: 323 EREEELRKQYEAARQ--EKSAKYQGVN-LYVKNLADEVDDEELRKIFEAYGAITSAKVMR 379
Query: 237 D 237
D
Sbjct: 380 D 380
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 19/184 (10%)
Query: 95 SRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
S A P LYV L S + L E+F G V S+ V R+ T S G Y+ S N
Sbjct: 54 STAHPNSASLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSAN 113
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ A+ L+ + + GR R+ +S + + +++ NL
Sbjct: 114 DGERALEELNYTLIKGRPCRIMWSQRDPALRKTGHG---------------NVFIKNLDG 158
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGR 271
A+ + L + F FG ++S +V D G ++ +GF+ + +++A A S+NG +
Sbjct: 159 AIDNKALHDTFAAFGNILSCKVAVDELG-NSKGYGFVHYETAEAASQAIKSVNGMLLNEK 217
Query: 272 TIIV 275
+ V
Sbjct: 218 KVFV 221
>gi|395817866|ref|XP_003782366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Otolemur
garnettii]
Length = 238
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
L HF +FGTV A ++ D++ R FGF+ F + D A + +G + V++
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 279 VDRTE 283
V + +
Sbjct: 174 VPKED 178
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G T+ ++ V R +S
Sbjct: 68 SPHAVDGNTVELKRAVSREDS 88
>gi|337281472|ref|YP_004620944.1| glycine-rich RNA binding protein [Ramlibacter tataouinensis TTB310]
gi|334732549|gb|AEG94925.1| Candidate glycine-rich RNA binding protein [Ramlibacter
tataouinensis TTB310]
Length = 159
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ DL F +FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDSDLEQAFSQFGAVSSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNGTDFRGRTIIVRE 277
+NG GR+++V E
Sbjct: 63 GMNGQPLGGRSVVVNE 78
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S S+L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDSDLEQAFSQFGAVSSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSRTR 184
++G +GGR + V + M SR R
Sbjct: 64 MNGQPLGGRSVVVNEARPMESRPR 87
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG
Sbjct: 300 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNG 354
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 5 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +G +
Sbjct: 110 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 167
Query: 274 IV 275
V
Sbjct: 168 FV 169
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + ++ R
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDSEIDDDEFRK 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + SA + D++G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 254 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQK 312
Query: 281 RTE 283
+ E
Sbjct: 313 KHE 315
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL D E +MF+ FG + S +SR+ E G SRG G
Sbjct: 222 DRQSKFEE--MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFG 278
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 279 FVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 338
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR FG +GT+ SA+V+ D
Sbjct: 339 N-LYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S + + + +++ NL A+ + L +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAIDNKALHD 160
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ + +++A +A +NG + + V +
Sbjct: 161 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS 219
Query: 281 RTE 283
+ +
Sbjct: 220 KKD 222
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D L E+F FG LSV+V + E+G S+G G+++
Sbjct: 490 ARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTD-ESGKSKGFGFVSYEKHED 548
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGN 209
A+ A+ ++G + G+ + V + R R+ E + ++ Y+ + LYV N
Sbjct: 549 AQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQ--ERSSRYQGVN-LYVKN 605
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L ++ E LR F FGT+ SA+V+ + G +R FGF+ FS+ E A+S +NG
Sbjct: 606 LDDSIDDERLRKAFSPFGTITSAKVMME--GGHSRGFGFVCFSAPEEAAKAVSEMNG 660
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ T S G Y+ + A+ +
Sbjct: 316 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLE 375
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ +++ NL ++ + L
Sbjct: 376 TMNLDVIKGKPVRIMWSQRDPSLRKSGVG---------------NIFIKNLEKSIDNKAL 420
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F FG ++S +V+ D G ++ +GF+ F + D A+ +NG + V
Sbjct: 421 YKTFSAFGNILSCKVISDENG--SKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYV 475
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R SR
Sbjct: 537 GFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRY 596
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL S D L + F PFGT+ S +V E G SRG G++ + A A
Sbjct: 597 QGVNLYVKNLDDSIDDERLRKAFSPFGTITSAKVMM--EGGHSRGFGFVCFSAPEEAAKA 654
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G V + + V +
Sbjct: 655 VSEMNGKLVATKPLYVALA 673
>gi|357122209|ref|XP_003562808.1| PREDICTED: uncharacterized protein LOC100836006 [Brachypodium
distachyon]
Length = 472
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 9/191 (4%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A +L+V + D L E F FG V + R+ TG +RG G++ A+
Sbjct: 3 ADSGKLFVGGISWETDEERLREYFGRFGEVTEAVIMRDRNTGRARGFGFIVFAEPGVAER 62
Query: 157 AIIALDGSDVGGREMRVRFSI---DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
+ +D + GR + + ++ D + ++N + I P + K++VG L+
Sbjct: 63 --VTMDKHMIDGRMVEAKKAVPRDDQSIASKNNGSSIGSPGPVRT----RKIFVGGLASN 116
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
V + R +F +FG + V++D Q R FGFI++ S+ D AL N + G+ +
Sbjct: 117 VTEVEFRRYFEQFGMITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALHKNFHELNGKMV 176
Query: 274 IVREGVDRTES 284
V+ V + +S
Sbjct: 177 EVKRAVPKEQS 187
>gi|325290560|ref|YP_004266741.1| RNP-1 like RNA-binding protein [Syntrophobotulus glycolicus DSM
8271]
gi|324965961|gb|ADY56740.1| RNP-1 like RNA-binding protein [Syntrophobotulus glycolicus DSM
8271]
Length = 84
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSL 263
LYVGNL WA E+L +F FG V+ +R++ DR+ +R FGF+ + DAER A L
Sbjct: 5 LYVGNLPWATSSEELTEYFAEFGNVIGSRIITDRETGRSRGFGFVEVADEDAER-LAEEL 63
Query: 264 NGTDFRGRTIIVRE 277
NG DF GR++ V E
Sbjct: 64 NGKDFNGRSLTVNE 77
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + EL E F FG V+ + + ETG SRG G++ + ++ + A L
Sbjct: 5 LYVGNLPWATSSEELTEYFAEFGNVIGSRIITDRETGRSRGFGFVEVADEDAERLA-EEL 63
Query: 162 DGSDVGGREMRV 173
+G D GR + V
Sbjct: 64 NGKDFNGRSLTV 75
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 16/184 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ + +G S+G G++ S +A+ AI L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSEEAAQKAIEKL 175
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V R E ++ K F ++V NLS + E+LR
Sbjct: 176 NGMLLNDKQVYV------GPFVRKHERDMAVDKTRFT-----NVFVKNLSESTLEEELRK 224
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTIIVREGV 279
FG FG + S V+ D G+ +R FGF++F + DA R A +LNG + V
Sbjct: 225 IFGEFGAITSVAVMKDEDGK-SRCFGFVNFENAEDAAR-AVEALNGYKLDNKDWFVGRAQ 282
Query: 280 DRTE 283
++E
Sbjct: 283 KKSE 286
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 85/172 (49%), Gaps = 4/172 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ R ++V NL S EL ++F FG + SV V ++ E G SR G++ + A
Sbjct: 202 KTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKD-EDGKSRCFGFVNFENAEDAA 260
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAV 214
A+ AL+G + ++ V + + R + K V +S LY+ NL ++
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSI 320
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
E L+ F +GT+ S +V+ D G ++ GF++FS+ E ALS +NG
Sbjct: 321 SDEKLKELFSPYGTITSCKVMRDPSG-VSKGSGFVAFSNPEEASRALSEMNG 371
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S +E +++ LY+ NL S +L E+F P+GT+ S +V R+P +G+S+G G++
Sbjct: 296 EQSAKEAVDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDP-SGVSKGSGFV 354
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI 196
+ A A+ ++G V + + V + R +A S + I
Sbjct: 355 AFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPI 404
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYVG+L V L + F + G VVS RV D Q + +G++++ + + AL L
Sbjct: 29 LYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEVL 88
Query: 264 NGTDFRGRTI 273
N T G+ I
Sbjct: 89 NFTPLHGKPI 98
>gi|410948433|ref|XP_003980944.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Felis catus]
Length = 250
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
L HF +FGTV A ++ D++ R FGF+ F + D A + +G + V++
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 279 VDRTE 283
V + +
Sbjct: 174 VPKED 178
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G T+ ++ V R +S
Sbjct: 68 SPHAVDGNTVELKRAVSREDS 88
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 239 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 297
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNG 412
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 63 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 122
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 123 QKALDTMNFDMIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDKSI 167
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +G +
Sbjct: 168 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 225
Query: 274 IV 275
V
Sbjct: 226 FV 227
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 144 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAATNAIKHV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV NL V E+ R
Sbjct: 203 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNLEPEVTNEEFRE 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F ++G + SA + D + +R FGF++F + D+ A LN +++G+ + V
Sbjct: 254 LFEKYGEITSASLSRDNETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYV 308
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV NL E E+F+ +G + S +SR+ ETG SRG G
Sbjct: 222 DRQSKFEE--MKANFTNVYVKNLEPEVTNEEFRELFEKYGEITSASLSRDNETGKSRGFG 279
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVY 199
++ + +SA A+ L+ + G+++ V + + R ++ A + +K Y
Sbjct: 280 FVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARV---EKASKY 336
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG 240
+ + LYV NL+ + E LR+ F FG + SARV+ D G
Sbjct: 337 QGVN-LYVKNLTDDIDDEKLRDLFIGFGNITSARVMRDTIG 376
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 26/226 (11%)
Query: 59 LAVVDEEAVVVEDEINGKDNVGGNEVDDDSS--VEEPRS----RARP--CELYVCNLPRS 110
++ V E +VE NG + N V D ++ E P S A+P LYV L S
Sbjct: 6 VSTVVPETNLVESSTNGT-TINTNVVTDGAADGNETPNSAAPTNAQPHSASLYVGELDPS 64
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
+ L E+F G V S+ V R+ T S G Y+ + + A+ L+ + + G+
Sbjct: 65 VTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKP 124
Query: 171 MRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVV 230
R+ +S + + + +++ NL A+ + L + F FG ++
Sbjct: 125 CRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKALHDTFAAFGNIL 169
Query: 231 SARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
S +V D G ++ +GF+ + +++A +A +NG + + V
Sbjct: 170 SCKVAQDEFG-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFV 214
>gi|417409570|gb|JAA51284.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 309
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 12 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 71 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 118
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
L HF +FGTV A ++ D++ R FGF+ F + D A + +G + V++
Sbjct: 119 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 178
Query: 279 VDRTE 283
V + +
Sbjct: 179 VPKED 183
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 72
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G T+ ++ V R +S
Sbjct: 73 SPHAVDGNTVELKRAVSREDS 93
>gi|387861093|gb|AFK08576.1| glycine-rich RNA binding protein 2a [Camelina sativa]
gi|387861099|gb|AFK08579.1| glycine-rich RNA binding protein 2a [Camelina sativa]
Length = 160
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
KL+VG LSW + LR+ F FG VV A+V+ DR+ +R FGF++FS + AA+S
Sbjct: 37 KLFVGGLSWGTDDQSLRDAFAHFGEVVDAKVIVDRETGRSRGFGFVNFSDETAASAAISE 96
Query: 263 LNGTDFRGRTIIVREGVDR 281
++G D GR I V + DR
Sbjct: 97 MDGKDLNGRNIRVNQANDR 115
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R +L+V L D L + F FG V+ +V + ETG SRG G++ +A
Sbjct: 32 RLMSTKLFVGGLSWGTDDQSLRDAFAHFGEVVDAKVIVDRETGRSRGFGFVNFSDETAAS 91
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTR 184
AI +DG D+ GR +RV + D S R
Sbjct: 92 AAISEMDGKDLNGRNIRVNQANDRPSAPR 120
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RSRA +Y+ N D L +F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDS-SGKSKGFGFVSFES 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + KK + KLYV N
Sbjct: 240 HEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFR 269
L V E LR F FG++ +V+ + +R FG I FSS E AL T+
Sbjct: 300 LDDTVDDEQLRKEFSSFGSITRVKVMKEEG--YSRGFGLICFSSPEEAAKAL----TEMN 353
Query: 270 GRTI 273
GR +
Sbjct: 354 GRVL 357
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T G Y+ + A
Sbjct: 5 AKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + GR +R+ +S R+A S +F V NL +V
Sbjct: 65 QRALDTMNFDVIKGRPIRLMWS------QRDACLRRSGIGNVF---------VKNLDRSV 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G ++ + F+ F S + + A+ +NG R +
Sbjct: 110 DNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQSQSAANCAIEQMNGKVINDRPV 167
Query: 274 IV 275
V
Sbjct: 168 FV 169
>gi|1009363|dbj|BAA11089.1| RGP-3 [Nicotiana sylvestris]
Length = 144
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 185 NAEALISPPKKIF--VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
NA + SP K + V KL+VG LSW + LR+ F FG VV ARV+ DR
Sbjct: 18 NAVSATSPMKSMLDAVRCMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGR 77
Query: 243 TRVFGFISFSSD-AERDAALSLNGTDFRGRTIIVREGVDRT 282
+R FGF++FS D +A +++G + +GR I VR +R
Sbjct: 78 SRGFGFVNFSDDECANEAIKAMDGQELQGRNIRVRIAQERA 118
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R +L+V L D L + F FG V+ V + ++G SRG G++ A
Sbjct: 34 RCMSTKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDECAN 93
Query: 156 NAIIALDGSDVGGREMRVRFS 176
AI A+DG ++ GR +RVR +
Sbjct: 94 EAIKAMDGQELQGRNIRVRIA 114
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPDEATKAV----TEMNGRIV 358
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGKD G +V+ + + +E SR
Sbjct: 232 GFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S + A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G VG + + V +
Sbjct: 350 VTEMNGRIVGSKPLYVALA 368
>gi|388512303|gb|AFK44213.1| unknown [Medicago truncatula]
Length = 121
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
S KL++G LS+ V + LR+ F +G VV ARV+ DR+ +R FGFI+F+S+ +A
Sbjct: 9 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFINFTSEESATSA 68
Query: 261 LSLNGTDFRGRTIIVREGVDR 281
LS++G D GR I V DR
Sbjct: 69 LSMDGQDLNGRNIRVSYANDR 89
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L++ L + D L + F +G V+ V + ETG SRG G++ S SA +A
Sbjct: 10 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFINFTSEESATSA- 68
Query: 159 IALDGSDVGGREMRVRFSID 178
+++DG D+ GR +RV ++ D
Sbjct: 69 LSMDGQDLNGRNIRVSYAND 88
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 9/154 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L EMF +G LSV+V + ++G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTD-DSGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G D+ G+ + V + + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDMNGKAIYVGRAKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDER 308
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
LR F FGT+ SA+V+ + G ++ FGF+ FS
Sbjct: 309 LRKEFSPFGTITSAKVMME--GGRSKGFGFVCFS 340
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I ++ NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278
+ F FG ++S +V+ D G ++ +GF+ F + + A+ +NG R + V
Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRKE 178
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,473,027,949
Number of Sequences: 23463169
Number of extensions: 186361202
Number of successful extensions: 511138
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13128
Number of HSP's successfully gapped in prelim test: 8186
Number of HSP's that attempted gapping in prelim test: 454012
Number of HSP's gapped (non-prelim): 49072
length of query: 284
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 143
effective length of database: 9,050,888,538
effective search space: 1294277060934
effective search space used: 1294277060934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)