BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023297
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 102/174 (58%), Gaps = 3/174 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR
Sbjct: 176 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLR 234
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ F +SA+V++DR +R FGFI+FSS ++AL ++N + GR +
Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPL 288
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +LYV NL + L + F +S +V + +G SRG G++T S + +A+
Sbjct: 216 PHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSAL 275
Query: 159 IALDGSDVGGREMRV 173
++ ++ GR +R+
Sbjct: 276 DTMNEVELEGRPLRL 290
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 10/184 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP D L +F+ G V EV N +T SRG G++TM ++ A+ A+
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ DV GR + V N R E PP+ +E +++YVGN+ W + L
Sbjct: 196 MYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARL 246
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREG 278
F G VVSARV++DR+ +R FGF++ +S+AE DA +L+G GRTI V
Sbjct: 247 EQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
Query: 279 VDRT 282
DR+
Sbjct: 307 EDRS 310
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+ + +YV N+P D + L ++F G V+S V + ETG SRG G++TM S
Sbjct: 223 PRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 282
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI LDG + GR +RV + D + R
Sbjct: 283 EMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 19/231 (8%)
Query: 55 FRSVLAVVDEEAVVVEDEINGKDN---VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSF 111
F SVL+ D+ +V++D+ G D VG E + +EP A+ L+V NLP
Sbjct: 55 FVSVLSE-DDNTLVLDDQEQGGDFPSFVG--EAGETEEYQEPSEDAK---LFVGNLPYDI 108
Query: 112 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171
D L ++F+ G V EV N ET SRG G++TM ++ A A+ D+ GR +
Sbjct: 109 DSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLL 168
Query: 172 RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS 231
V + SR P + ++ +++YVGN+ W + L F G VVS
Sbjct: 169 TVNKAAPRGSR---------PERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVS 219
Query: 232 ARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGVDR 281
ARV+ DR+ +R FGF++ SS+AE A++ L+G GRTI V +R
Sbjct: 220 ARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEER 270
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 105 bits (262), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 103/197 (52%), Gaps = 13/197 (6%)
Query: 83 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
+V D+ VE + + P E L+V NLP D +L +F G V EV N ET
Sbjct: 35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDR 94
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P+ F
Sbjct: 95 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF-- 145
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
E ++YVGNL W V L F G VVSARV+ DR+ +R FGF++ SS++E D
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205
Query: 259 AALSLNGTDFRGRTIIV 275
A +L+G GR + V
Sbjct: 206 AIAALDGQTLDGRAVRV 222
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 3/192 (1%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D D VEE R+ + +++V NLP S D + L E+F+ G V VEV + TG SRG G
Sbjct: 72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFG 131
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
++TM S + A +G ++ GR +RV R ++ S + ++S ++
Sbjct: 132 FVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGS--RGGGSFDSSNR 189
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A+ SL
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249
Query: 264 NGTDFRGRTIIV 275
+G D GR I V
Sbjct: 250 DGVDLNGRAIRV 261
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 18/220 (8%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
G ++++DD V E + +L+V NLP S D + L +F+ G V VEV + TG
Sbjct: 67 GFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGR 126
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-----------------RFSIDMNSR 182
SRG G++TM + + A +G ++ GR +RV R
Sbjct: 127 SRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGG 186
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
R+ + + +S +++YVGNLSW V L+ F G VV A+V++DR
Sbjct: 187 GRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR 246
Query: 243 TRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
+R FGF+++SS E DA SLNG D GR+I V +R
Sbjct: 247 SRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S+
Sbjct: 145 EPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLP 252
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRG 270
W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G + G
Sbjct: 253 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG 312
Query: 271 RTIIVREGVDR 281
R I V +R
Sbjct: 313 RAIRVNVAEER 323
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 18/218 (8%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
++++DD V E + +L+V NLP S D + L +F+ G V VEV + +G SR
Sbjct: 70 DQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSR 129
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRV-----------------RFSIDMNSRTR 184
G G++TM + + A +G ++ GR +RV R R
Sbjct: 130 GFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGR 189
Query: 185 NAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + + +S +++YVGNLSW V L+ F G VV A+V++DR +R
Sbjct: 190 DGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSR 249
Query: 245 VFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
FGF+++SS E DA SLNG D GR+I V +R
Sbjct: 250 GFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 41/227 (18%)
Query: 83 EVDDD--SSVEEPRSRARPCEL--YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
EV++D + V P+ ++ +L +V NLP + D ++L ++F+ G V VEV + TG
Sbjct: 70 EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITG 129
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--- 195
SRG G++TM S++ + A +G ++ GR +RV A PPK+
Sbjct: 130 RSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV-------------NAGPPPPKREDG 176
Query: 196 --------------------IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
S +++YVGNLSW V L + F G VV ARV+
Sbjct: 177 FSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVI 236
Query: 236 HDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIVREGVDR 281
+DR ++ FGF+++ S E ++A SL+G D GR I V E R
Sbjct: 237 YDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 97/181 (53%), Gaps = 5/181 (2%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NL S D + L E+F+ G V VEV + TG SRG G++TM S + A
Sbjct: 87 LKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 ALDGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G ++ GR +RV NS R + + ++S +++YVGNL+W V
Sbjct: 147 QFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVD 206
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274
+ L F G VV A+V++DR +R FGF+++SS E + A+ SL+G D GR I
Sbjct: 207 QDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266
Query: 275 V 275
V
Sbjct: 267 V 267
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 12/179 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ + EL + + G + EV + +G SR G++TM ++ A I L
Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145
Query: 162 DGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+ +++GGR+++V + M+ T AE FV ESP+K+Y+GNL+ V E
Sbjct: 146 NDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNE 198
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
L++ F G V+ A+V + FGF+SFSS+ E +AA+ +LN + G+ I V
Sbjct: 199 LLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 25 KRFGFTSLPTL--INFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN 82
+RFGF ++ T+ N KL+ G R + + + E + G D +
Sbjct: 125 RRFGFVTMKTVEDANAVIEKLNDT-----EIGGRKI------KVNITEKPLEGMD-IATT 172
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
+ +D VE P ++Y+ NL ++ L + F G VL +V R P T S G
Sbjct: 173 QAEDSQFVESP------YKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNG 226
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
G+++ S + AI AL+ S + G+++RV
Sbjct: 227 FGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E +LYVGN+ + ++LR G + A V++D+ +R FGF++ + + +A
Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140
Query: 260 AL-SLNGTDFRGRTIIVR------EGVD 280
+ LN T+ GR I V EG+D
Sbjct: 141 VIEKLNDTEIGGRKIKVNITEKPLEGMD 168
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 8/194 (4%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV NL D ++ E+FKPFG V SV + + E G SRG G
Sbjct: 226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFG 282
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA NA+ ++ ++ G+++ V + R + L + K+ Y+
Sbjct: 283 FVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGV 342
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 343 N-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFVCFSSPEEATKAIT 400
Query: 263 -LNGTDFRGRTIIV 275
+N +G+ + V
Sbjct: 401 EMNQRMIQGKPLYV 414
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V GR R+ +S S RN + I ++ NL A+ + L +
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNI---------------FIKNLHPAIDNKALHD 164
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ + +++A A ++NG R + V + V
Sbjct: 165 TFSAFGRILSCKVATDELGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVS 223
Query: 281 R 281
+
Sbjct: 224 K 224
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+S+ E S+ + L+V NL S D +L E FKPFGT+ S V + + G S+G G++
Sbjct: 329 ESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFV 387
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A AI ++ + G+ + V + + R E I
Sbjct: 388 CFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQ 432
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL + D L E F FG +LS +V+ + E G+SRG G++ + + A++AI A+
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +E+ V + R E + K F +YV N+ E+
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEV----KAKFT-----NVYVKNIDQETSQEEFEE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
FG++G + SA + D +G+ R FGF++F A A+ LN +F+G+ + V
Sbjct: 238 LFGKYGKITSAVLEKDSEGK-LRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYV 291
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 7/180 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE +A+ +YV N+ + E E+F +G + S + ++ E G RG G
Sbjct: 206 DRQSKLEE--VKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE-GKLRGFG 262
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ + G+++ V + R + + + K+ Y+
Sbjct: 263 FVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L+ F FGT+ SA+V+ D G +R FGF+ FS+ E A++
Sbjct: 323 N-LFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETG-NSRGFGFVCFSTPEEATKAIT 380
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 17/186 (9%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E P+ LYV L + + L ++F P G+V S+ V R+ T S G Y+
Sbjct: 29 ETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHD 88
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ AI L+ + + G+ R+ +S S + I Y+ NL
Sbjct: 89 HEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI---------------YIKNL 133
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFR 269
A+ + L F FG ++S +V D G +R FGF+ F ++++ RDA +++G
Sbjct: 134 HPAIDNKSLHETFSTFGNILSCKVATDENG-VSRGFGFVHFENESDARDAIEAVDGMLMN 192
Query: 270 GRTIIV 275
+ + V
Sbjct: 193 DQEVYV 198
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F PFGT+ S +V R+ ETG SRG G++ +
Sbjct: 314 EKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP + +L ++F+ G+V+ ++ N E G SRG G + M S+ A +AI
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQM 238
Query: 161 LDGSDVGGREMRVR-----------FSIDMNSRTRNAEALISPPKKIF------------ 197
L +D GR + VR +S N T AE ++
Sbjct: 239 LHNTDFMGRTLEVRLDRFAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANTQVEDL 298
Query: 198 VYES-PHK-----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
VY + PH +YVGNL WA +L + F G+V+ AR+ ++ G+ ++ FG + F
Sbjct: 299 VYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGR-SKGFGVVQF 357
Query: 252 SSDAERDAALS---LNGTDFRGRTI 273
+ E DAA S LNG + GR +
Sbjct: 358 EN--ENDAASSIEKLNGYRYGGRPL 380
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 89/176 (50%), Gaps = 3/176 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL EL E G VL+ E+ P G+S+GC + + A+ AI L
Sbjct: 79 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GR + +R + N+R ++ S E +L+VGNL + V+ +DL++
Sbjct: 138 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLKD 197
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276
F + G+V+ A + +++G++ R G + SS E A+ L+ TDF GRT+ VR
Sbjct: 198 LFRQAGSVIRADIQMNQEGRS-RGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVR 252
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 99 PCE--LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
PC +YV NLP + LL++F G+V+ ++ P TG S+G G + + N A +
Sbjct: 307 PCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAAS 365
Query: 157 AIIALDGSDVGGREMRVRFS 176
+I L+G GGR +++ ++
Sbjct: 366 SIEKLNGYRYGGRPLQLSYA 385
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALS 262
++YVGNLS+ V+ +L+ G+ G V++ +L+ G ++ I +S+ E R A +
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNG-LSKGCAIIEYSTAEEARTAIKT 136
Query: 263 LNGTDFRGRTIIVREGVDRTES 284
L+ F GR + +RE DR ++
Sbjct: 137 LSNQKFMGRLVYIRE--DREQN 156
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHV 208
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ V E+ R
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNINNEVTDEEFRE 259
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG V S+ + D++G+ +R FGF++F++ +A A LNG DFRG+ + V
Sbjct: 260 LFAKFGEVTSSSLARDQEGK-SRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQK 318
Query: 281 RTE 283
+ E
Sbjct: 319 KHE 321
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 14/179 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD S EE +A +YV N+ E E+F
Sbjct: 212 LLNEKKVYVGHHIPKKDR--------QSKFEE--MKANFTNVYVKNINNEVTDEEFRELF 261
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
FG V S ++R+ E G SRG G++ + +A A+ L+G D G+++ V + +
Sbjct: 262 AKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKH 320
Query: 181 SRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
R + K Y+ + LY+ NL V + LR F +G + SA+V+ D
Sbjct: 321 EREEELRKSYEAARLEKANKYQGVN-LYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRD 378
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 19/178 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV L S + L E+F G+V S+ V R+ T S G Y+ + + A+
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 160 ALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L+ + + GR R+ +S D R A +++ NL A+ +
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGA----------------GNIFIKNLDAAIDNKA 163
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTDFRGRTIIV 275
L + F FG ++S +V D G ++ +GF+ + +D A A +NG + + V
Sbjct: 164 LHDTFAAFGNILSCKVAQDEHG-NSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV 220
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGN------------EVDDDSSVEEPR----SRA 97
GF V E A DE+NGKD G + E + S E R ++
Sbjct: 282 GFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKY 341
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
+ LY+ NL D +L MF +G + S +V R+
Sbjct: 342 QGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRD 378
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R R+ P F +YV NL + ++LR
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRK 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTDFRGRTIIVREGVD 280
FG+FG + SA V+ D+ G +R FGF++F ++A A +NG + V
Sbjct: 248 TFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 281 RTE 283
++E
Sbjct: 307 KSE 309
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +YV NLP+ EL + F FG + S V R+ ++G SR G++ +A +A
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASA 285
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVK 215
+ ++G +G + V + + R ++I +E LY+ NL +V
Sbjct: 286 VEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE-QERINRFEKSQGANLYLKNLDDSVD 344
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
E L+ F +G V S++V+ + +G +R FGF+++S+ E ALS +NG
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEMNG 394
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY +L + L ++FK V+SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R +R+ S R+ +S IF + NL ++ + L
Sbjct: 110 NYTPLFDRPIRIMLS------NRDPSTRLSGKGNIF---------IKNLDASIDNKALFE 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FGT++S +V D G+ ++ +GF+ F + AA+ LNG + + V +
Sbjct: 155 TFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIR 213
Query: 281 RTE 283
R E
Sbjct: 214 RQE 216
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++G +G + + + + R + +AL S
Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 11/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R+
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTEEEFRD 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +FG + SA + D + +R FGF++F+S AA+ +LN DF+G+ + V
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYV 309
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + E ++F+ FG + S ++R+ E+G SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S ++A A+ AL+ D G+++ V + + R + K Y+
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV 340
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ LY+ NLS + E LR F +GT+ SA+V+ D ++T SD+E++A
Sbjct: 341 N-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST---------SDSEKEA 387
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ + + GR R+ +S + + + +++ NL A+ + L
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKAL 159
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
+ F FG ++S +V D G ++ +GF+ + +++A ++A +NG + + V
Sbjct: 160 HDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 215
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + +TG SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 310 LRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R +GF+ F + +A A ++NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 36/187 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A+ T
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----T 351
Query: 267 DFRGRTI 273
+ GR +
Sbjct: 352 EMNGRIV 358
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G +R FGF+ F + +A + A ++NG R + V
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 348 KAVTEMNGRIVGTKPLYVALA 368
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 91/175 (52%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + ++G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ S + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 310 LRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F P G ++S+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R +GF+ F + +A A ++NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDNVG--------GNEVDDDSSV--------EEPRSRARPCELYVCNL 107
EEA E+NGK+ G ++ S + +E +R + LYV NL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F P+GT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 99/194 (51%), Gaps = 8/194 (4%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S +EE +A +YV N+ ++ E E+F PFG + S+ + ++ E G S+G G
Sbjct: 235 DRESKLEE--MKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFG 291
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ ++ G+++ V + RT + + K+ Y+
Sbjct: 292 FVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGV 351
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL + E L F FGT+ S++V+ D G+ ++ FGF+ FS+ E A++
Sbjct: 352 N-LFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGK-SKGFGFVCFSTPEEATKAIT 409
Query: 263 -LNGTDFRGRTIIV 275
+N G+ + V
Sbjct: 410 EMNQRMVNGKPLYV 423
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + + AI L
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 129 NYTPVEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 173
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ + ++ AA+ S+NG R + V + V
Sbjct: 174 TFSAFGKILSVKVATDDLGQ-SKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVS 232
Query: 281 RTE 283
+ +
Sbjct: 233 KKD 235
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 15/186 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LSV+V+ + + G S+ G++ + +A+ AI ++
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V + R E + + + +YV N+ A ++
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKA---------NYTNIYVKNIDLAYTEKEFEE 266
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV---RE 277
F FG + S + D +G+ ++ FGF++F +A A LN + G+ I V ++
Sbjct: 267 LFAPFGKITSIYLEKDAEGK-SKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQK 325
Query: 278 GVDRTE 283
+RTE
Sbjct: 326 KRERTE 331
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + L+V NL D +L E FKPFGT+ S +V + + G S+G G++ +
Sbjct: 343 EKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTP 401
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ V G+ + V + + R E I
Sbjct: 402 EEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQ 441
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++
Sbjct: 217 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVN 273
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---K 204
+ SA+ A+ L+ +V G+++ + R AE S +K E+
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVN 331
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYV NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEM 390
Query: 264 NG 265
NG
Sbjct: 391 NG 392
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G SRG ++ + +A AI A+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R E L + F +Y+ N+ V + +
Sbjct: 195 NGMLLNDKKVYVGHHVGKKERLSKVEEL----RAQFT-----NVYIKNVDLEVTDAEFED 245
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG +S + D KG ++ FGF+++ + ++ R A LN + G+ +
Sbjct: 246 LVKPFGPTISVALSRDEKG-VSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQT 304
Query: 281 RTE 283
++E
Sbjct: 305 KSE 307
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + + I ++ NL ++ + L +
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNI---------------FIKNLDQSIDNKALHD 152
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G+ +R F F+ +S+ DAA+ ++NG + + V V
Sbjct: 153 TFAAFGDILSCKVGTDENGK-SRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVG 211
Query: 281 RTE 283
+ E
Sbjct: 212 KKE 214
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 95/182 (52%), Gaps = 10/182 (5%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++
Sbjct: 217 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVN 273
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---K 204
+ SA+ A+ L+ +V G+++ + R AE S +K E+
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVN 331
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYV NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEM 390
Query: 264 NG 265
NG
Sbjct: 391 NG 392
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G SRG ++ + +A AI A+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R E L + F +Y+ N+ V + +
Sbjct: 195 NGMLLNDKKVYVGHHVGKKERLSKVEEL----RAQFT-----NVYIKNVDLEVTDAEFED 245
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
FG +S + D KG ++ FGF+++ + ++ R A LN + G+ +
Sbjct: 246 LVKPFGPTISVALSRDEKG-VSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQT 304
Query: 281 RTE 283
++E
Sbjct: 305 KSE 307
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + + I ++ NL ++ + L +
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNI---------------FIKNLDQSIDNKALHD 152
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G+ +R F F+ +S+ DAA+ ++NG + + V V
Sbjct: 153 TFAAFGDILSCKVGTDENGK-SRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVG 211
Query: 281 RTE 283
+ E
Sbjct: 212 KKE 214
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 93/175 (53%), Gaps = 10/175 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +G + SA+V+ D +G+ ++ FGF+ F++ +E A+ T+ GR +
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAV----TELNGRVV 352
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L + F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG G+ + V + +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167
Query: 281 RTE 283
R E
Sbjct: 168 RKE 170
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + + A A+ L
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQEVTDEEFRK 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG + SA + D++G+ +R FGF++FS+ D+ + A +N + +G+ + V
Sbjct: 252 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Query: 281 RTE 283
+ E
Sbjct: 311 KHE 313
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 220 DRQSKFEE--MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ ++ G+++ V + + R + K Y+
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR F FGT+ SA+V+ D
Sbjct: 337 N-LYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 21/196 (10%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
S +P S LYV L S + L E+F G V S+ V R+ T S G Y+
Sbjct: 45 SANQPHS----ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 100
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ + A+ L+ + + G+ R+ +S + + + +++
Sbjct: 101 NNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIK 145
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTD 267
NL A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG
Sbjct: 146 NLDAAIDNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 204
Query: 268 FRGRTIIVREGVDRTE 283
+ + V + + +
Sbjct: 205 LNDKKVFVGHHISKKD 220
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQEVTDEEFRK 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F +FG + SA + D++G+ +R FGF++FS+ D+ + A +N + +G+ + V
Sbjct: 252 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310
Query: 281 RTE 283
+ E
Sbjct: 311 KHE 313
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 220 DRQSKFEE--MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ ++ G+++ V + + R + K Y+
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR F FGT+ SA+V+ D
Sbjct: 337 N-LYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 47 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 106
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 107 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDAAI 151
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 152 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 210
Query: 274 IVREGVDRTE 283
V + + +
Sbjct: 211 FVGHHISKKD 220
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL S D L + F FG ++S +V+ + +G S+G G++ + SA+
Sbjct: 120 RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQ 178
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI L+G + +++ V + R A K F +YV NL+ +
Sbjct: 179 KAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN------KTKFT-----NVYVKNLAESTT 227
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNGTDFRGRTI 273
+DL+N FG +G + SA V+ D +G+ ++ FGF++F + DA R A SLNG F +
Sbjct: 228 DDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAAR-AVESLNGHKFDDKEW 285
Query: 274 IVREGVDRTE 283
V ++E
Sbjct: 286 YVGRAQKKSE 295
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L + F GTV++V V R+ T S G GY+ + A AI L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +RV +S S R+ +++ NL ++ + L +
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAG---------------NIFIKNLDESIDHKALHD 142
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG +VS +V D GQ ++ +GF+ ++++ A+ LNG + + V +
Sbjct: 143 TFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLR 201
Query: 281 RTE 283
R E
Sbjct: 202 RQE 204
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 12/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L F +G + S V ++ E G S+G G++ + + A A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + + R R + L K LYV NL ++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF----QSSNLYVKNLDPSISD 331
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIV 275
E L+ F FGTV S++V+ D G T++ GF++F++ E A+S L+G + + V
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPNG-TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F PFGTV S +V R+P G S+G G++
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFV 363
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ L G + + + V + R +A S
Sbjct: 364 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFS 408
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + +A A +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G+S+G G++ + +A NAI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V+ E+ R
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + SA + D +G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 242 LFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
Query: 281 RTE 283
+ E
Sbjct: 301 KHE 303
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E ++F+ FG + S +SR+ E G SRG G
Sbjct: 210 DRQSKFEE--MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ +V +++ V + + R + K Y+
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV 326
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V + LR FG +GT+ SA+V+ D
Sbjct: 327 N-LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 22/210 (10%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
DN EV ++VE P + ++P LYV L S + L E+F G V S+ V R+
Sbjct: 20 DNAPAPEV---TAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD 76
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
T S G Y+ + A+ L+ + + G+ R+ +S + + +
Sbjct: 77 AVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQG------ 130
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SS 253
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + ++
Sbjct: 131 ---------NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVHYETA 180
Query: 254 DAERDAALSLNGTDFRGRTIIVREGVDRTE 283
+A +A +NG + + V + + +
Sbjct: 181 EAANNAIKHVNGMLLNDKKVFVGHHISKKD 210
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 93/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + +++ V + I R E + K F +YV N+S E+ R+
Sbjct: 214 NNMLLNEKKVYVGYHIPKKDRQSKFEEM----KANFT-----NIYVKNISLEATDEEFRD 264
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREGVD 280
F ++G V S+ + D +G+ +R FGF++F++ + A LNG +FRG+ + V
Sbjct: 265 LFAKYGDVTSSSLARDSEGK-SRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQK 323
Query: 281 RTE 283
+ E
Sbjct: 324 KHE 326
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ P+S A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 56 SAAPHPQSSA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVN 112
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S + + A+ L+ + + GR R+ +S + + + +++
Sbjct: 113 YNSTSDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 157
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D
Sbjct: 158 KNLDVAIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETD 203
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ E ++F +G V S ++R+ E G SRG G
Sbjct: 233 DRQSKFEE--MKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSE-GKSRGFG 289
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + A A+ L+G + G+++ V + + R + K Y+
Sbjct: 290 FVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 349
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NL+ + + LR F +G + SA+V+ D
Sbjct: 350 N-LYIKNLADDIDDDKLRQMFSEYGPITSAKVMRD 383
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+S LYVG L +V L F + G+V S RV D + + + +++++S ++ +
Sbjct: 62 QSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEK 121
Query: 260 AL-SLNGTDFRGR 271
AL LN T +GR
Sbjct: 122 ALEELNYTLIKGR 134
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + +G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F +GT+ S +V+ + G ++ FGF+ FSS E A+ T+ GR +
Sbjct: 310 LRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G +R +GF+ F + +A A ++NG R + V
Sbjct: 118 TFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RRE 178
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L E F FG VLS +V+ + E G SRG G++ + AK+AI A+
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G E+ V + R E K F +YV N+ E+
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEA----KANFT-----NIYVKNIDVETTDEEFEQ 249
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIV 275
F ++G +VSA + D +G+ + FGF++F +A A LNG +F+ + + V
Sbjct: 250 LFSQYGEIVSAALEKDAEGK-PKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYV 303
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 19/176 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L ++F P G + S+ V R+ T S G Y+ + K AI L
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ +++ GR R+ +S D R + + +++ NL A+ + L
Sbjct: 112 NYAEINGRPCRIMWSERDPAIRKKGS----------------GNIFIKNLHPAIDNKALH 155
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTDFRGRTIIV 275
F FG V+S +V D G +R FGF+ F +++ +DA ++NG G + V
Sbjct: 156 ETFSTFGEVLSCKVALDENG-NSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYV 210
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 90/180 (50%), Gaps = 7/180 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE ++A +YV N+ E ++F +G ++S + ++ E G +G G
Sbjct: 218 DRISKLEE--AKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE-GKPKGFG 274
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ N+A A+ L+G + + + V + R + + K+ ++
Sbjct: 275 FVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGV 334
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL ++ E L+ F +GT+ SARV+ D++G ++ FGF+ FSS E A++
Sbjct: 335 N-LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEG-NSKGFGFVCFSSPEEATKAMT 392
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 18/184 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NLP S + L +MFK FG ++S +V+ E G SRG G++ ++A AI L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V +E+ V + R + E + LY+ NL V + LR
Sbjct: 173 NSTIVADKEIYVGKFMKKTDRVKPEEKYTN-------------LYMKNLDADVSEDLLRE 219
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTDFRGRTIIVREGV 279
F FG +VS + D + + R + F++F + DA R AA ++NGT F + + V
Sbjct: 220 KFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR-AAETVNGTKFGSKCLYVGRAQ 277
Query: 280 DRTE 283
+ E
Sbjct: 278 KKAE 281
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 97/190 (51%), Gaps = 16/190 (8%)
Query: 96 RARPCE----LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
R +P E LY+ NL D+SE L E F FG ++S+ ++++ E + RG ++
Sbjct: 193 RVKPEEKYTNLYMKNL--DADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFD 249
Query: 150 SINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+ A+ A ++G+ G + + R + + R +K+ S +Y
Sbjct: 250 NPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVS--NIY 307
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSLNG 265
V N++ AV E+LR HF + GT+ S +++ D KG+ ++ FGF+ FS+ E DA + +G
Sbjct: 308 VKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVKTFHG 366
Query: 266 TDFRGRTIIV 275
F G+ + V
Sbjct: 367 QMFHGKPLYV 376
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE + A+ +YV N+ + EL + F GT+ S ++ + E G S+G G++ +
Sbjct: 295 EEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFST 353
Query: 151 INSAKNAIIALDGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISP 192
A +A+ G G+ +++V+F + +R ++ A ++P
Sbjct: 354 PEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNP 410
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 98/194 (50%), Gaps = 8/194 (4%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ + +L ++F P+G + S+ + ++ E G S+G G
Sbjct: 220 DRESKFEE--IKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 277 FVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL + E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 337 N-LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGK-SKGFGFVCFSSPEEATKAIT 394
Query: 263 -LNGTDFRGRTIIV 275
+N F G+ + V
Sbjct: 395 EMNQRMFFGKPLYV 408
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + + AI L
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 114 NYSPIEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 158
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D GQ ++ FGF+ + +++A A ++NG R + V + +
Sbjct: 159 TFSTFGKILSCKVATDDMGQ-SKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHIS 217
Query: 281 RTE 283
+ +
Sbjct: 218 KKD 220
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + L++ NL + D +L E FKPFGT+ S V + ETG S+G G++ S
Sbjct: 328 EKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSP 386
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ G+ + V + + R E I
Sbjct: 387 EEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQQIQ 426
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 40/240 (16%)
Query: 23 TPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN 82
+P+ F+S P+ I Q+ + S + +++ G SV + + + G +N G N
Sbjct: 24 SPQDTDFSSYPSTIGRQHSQQSQRYYQNNNCGLGSVGNMANSTNSLNS----GTNNSGTN 79
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
L V LP+ EL +F+ G + + + R+ +TG S G
Sbjct: 80 -------------------LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYG 120
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G++ GS A AI L+G V + ++V F+ + R+
Sbjct: 121 YGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTN--------------- 165
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LYV NLS ++ E L FG++G +V +L D+ T R FI F+ E A+S
Sbjct: 166 --LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 223
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R LYV NL RS +L +F +G ++ + R+ TG RG ++ A+ A
Sbjct: 162 RDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEA 221
Query: 158 IIALD 162
I AL+
Sbjct: 222 ISALN 226
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 92/175 (52%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + E+ R
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDQEISEEEFRQ 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
F +FG + SA + D++G+ +R FGF+++S+ D+ + A +N + +G+ + V
Sbjct: 248 MFEKFGEITSATLSRDQEGK-SRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYV 301
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 216 DRQSKFEE--MKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFG 272
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ +V G+++ V + + R + K Y+
Sbjct: 273 FVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 332
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR F +GT+ SA+V+ D
Sbjct: 333 N-LYVKNLTDDIDDEKLREMFAPYGTITSAKVMRD 366
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 43 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 102
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 103 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDAAI 147
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 206
Query: 274 IVREGVDRTE 283
V + + +
Sbjct: 207 FVGHHISKKD 216
Score = 38.1 bits (87), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
E S+ + LYV NL D +L EMF P+GT+ S +V R+ T I R
Sbjct: 324 EKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRD--TNIER 371
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQ--DRITRYQVVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 18/185 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIVREG 278
+ FG ++S V+ D G ++ +GF+ F + +A A +NG GR + V +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQF 173
Query: 279 VDRTE 283
R E
Sbjct: 174 KSRKE 178
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 16/177 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTI 273
LR F FG++ SA+V L D + ++ FGF+ FSS E A+ T+ GR +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAV----TEMNGRIV 358
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ + F+ F + D A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 14/179 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + L EMF +G LSV+V + + G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ M R + ++ + R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A+ T+ GR + +
Sbjct: 309 RLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAV----TEMNGRIVATK 361
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG R + V
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 281 RTE 283
R E
Sbjct: 176 RKE 178
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 90/183 (49%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V ED R
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEM----KANFT-----NIYVKNIDLDVTDEDFRE 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F + G + SA + D +G+ +R FGF+++ +A A LN +F+G+ + V
Sbjct: 248 LFEKHGDITSASIARDDQGK-SRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQK 306
Query: 281 RTE 283
+ E
Sbjct: 307 KHE 309
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ S + A+ L
Sbjct: 50 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEEL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S + + + +++ NL A+ + L +
Sbjct: 110 NYTVIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDHAIDNKALHD 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ + +++A +A +NG + + V +
Sbjct: 155 TFAAFGNILSCKVAQDELG-NSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIP 213
Query: 281 RTE 283
+ E
Sbjct: 214 KKE 216
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 4/142 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +YV N+ + E+F+ G + S ++R+ + G SRG G++ +A
Sbjct: 225 KANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFGFVNYIRHEAAA 283
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ L+ + G+++ V + + R + K Y+ + LY+ NL+
Sbjct: 284 VAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVN-LYIKNLNDD 342
Query: 214 VKPEDLRNHFGRFGTVVSARVL 235
V E LR+ F FGT+ SA+V+
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVI 364
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
E +S+ + LY+ NL D +L +MF PFGT+ S +V
Sbjct: 324 EKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKV 363
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQDVTEEEFRE 248
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275
F +FG + SA + D++G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 249 LFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYV 302
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E E+F+ FG + S +SR+ E G SRG G
Sbjct: 217 DRQSKFEE--MKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 333
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR FG +GT+ SA+V+ D
Sbjct: 334 N-LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 44 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 103
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 104 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAI 148
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTI 273
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG + +
Sbjct: 149 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 207
Query: 274 IV 275
V
Sbjct: 208 FV 209
>sp|O74400|YOCE_SCHPO Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1
Length = 674
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +L F G + V NPETG +RG G++T + A+ A L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV-KPEDLR 220
+ GR +R+ F+ + + + K I P +L + NL W++ KP+ L
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRP-RLIIRNLPWSIKKPQHLE 125
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTDFRGRTIIV 275
HF +FG V ++ G+ F F+ A +A SLNGT+ GR I V
Sbjct: 126 PHFSKFGKVREIKIPTKGGGRMC-GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
Score = 31.6 bits (70), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
++V NL + ++L NHF +FG + A+++ D + GFI F + + L +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMA 338
Query: 265 G-------TDFRGR---TIIVREGVD 280
T+ R +++V EG+D
Sbjct: 339 SQLPTQEPTEAEKRFLPSVLVDEGID 364
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
++LYVGNLSW V L N F G VV ARV++DR ++ FGF++ SS E A+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 262 SLNGTDFRGRTIIVREGVDR 281
SLNG D GR I V E R
Sbjct: 317 SLNGADLDGRQIRVSEAEAR 336
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 12/96 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL D L +F G V+ V + ++G S+G G++T+ S + AI +L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
+G+D+ GR++RV +EA PP+ F
Sbjct: 319 NGADLDGRQIRV------------SEAEARPPRGQF 342
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
DDS+ E S + +L+V NL + D ++L ++F+ G V VEV + TG SRG G+
Sbjct: 85 DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRV 173
+TM + + A +G + GR +RV
Sbjct: 145 VTMSTAAEVEAAAQQFNGYEFEGRPLRV 172
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262
KL+VGNLS+ V L F G V V++D+ +R FGF++ S+ AA
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 263 LNGTDFRGRTIIVREG 278
NG +F GR + V G
Sbjct: 160 FNGYEFEGRPLRVNAG 175
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 12/183 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + ++ R
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDSEIDDDEFRK 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280
F +FG + SA + D++G+ +R FGF++FS+ AA+ +N + R + + V
Sbjct: 254 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQK 312
Query: 281 RTE 283
+ E
Sbjct: 313 KHE 315
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL D E +MF+ FG + S +SR+ E G SRG G
Sbjct: 222 DRQSKFEE--MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFG 278
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 279 FVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 338
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR FG +GT+ SA+V+ D
Sbjct: 339 N-LYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S + + + +++ NL A+ + L +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAIDNKALHD 160
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTDFRGRTIIVREGVD 280
F FG ++S +V D G ++ +GF+ + +++A +A +NG + + V +
Sbjct: 161 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS 219
Query: 281 RTE 283
+ +
Sbjct: 220 KKD 222
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG
Sbjct: 300 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNG 354
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 5 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +G +
Sbjct: 110 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKV 167
Query: 274 IV 275
V
Sbjct: 168 FV 169
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278
L HF +FGTV A ++ D++ R FGF+ F + D A + +G + V++
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 279 VDRTE 283
V + +
Sbjct: 174 VPKED 178
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G L+ LR HF FGT+ V+ + + + +R FGF+++S+ E DAA++
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67
Query: 264 NGTDFRGRTIIVREGVDRTES 284
+ G T+ ++ V R +S
Sbjct: 68 SPHAVDGNTVELKRAVSREDS 88
Score = 38.5 bits (88), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P + A+ +L+V L +L+E F FGTV E+ + ++G RG G++ + +
Sbjct: 91 PGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHD 150
Query: 153 SAKNAII 159
+A A +
Sbjct: 151 AADKAAV 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,503,150
Number of Sequences: 539616
Number of extensions: 4399555
Number of successful extensions: 13578
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 11250
Number of HSP's gapped (non-prelim): 1908
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)