Query 023297
Match_columns 284
No_of_seqs 254 out of 2450
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 02:58:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6E-37 1.3E-41 271.4 25.2 233 49-283 41-351 (352)
2 TIGR01659 sex-lethal sex-letha 100.0 1.3E-35 2.8E-40 258.2 22.7 171 95-282 103-276 (346)
3 TIGR01645 half-pint poly-U bin 100.0 8.5E-35 1.9E-39 265.6 21.1 180 97-282 105-285 (612)
4 TIGR01628 PABP-1234 polyadenyl 100.0 2.6E-34 5.7E-39 268.8 21.3 232 50-283 126-366 (562)
5 KOG0148 Apoptosis-promoting RN 100.0 4.9E-34 1.1E-38 228.8 15.9 177 99-282 62-239 (321)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.5E-33 2.1E-37 244.5 21.8 167 99-282 3-172 (352)
7 TIGR01628 PABP-1234 polyadenyl 100.0 9.5E-33 2.1E-37 258.3 22.5 221 49-283 38-263 (562)
8 KOG0145 RNA-binding protein EL 100.0 2.4E-32 5.3E-37 217.9 17.4 236 45-282 75-359 (360)
9 TIGR01622 SF-CC1 splicing fact 100.0 6.6E-32 1.4E-36 247.0 22.2 179 96-280 86-265 (457)
10 KOG0117 Heterogeneous nuclear 100.0 6.1E-32 1.3E-36 230.2 18.2 208 49-283 121-333 (506)
11 KOG0117 Heterogeneous nuclear 100.0 8.2E-32 1.8E-36 229.5 18.1 182 74-283 63-250 (506)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.2E-31 1.3E-35 243.7 23.5 229 51-280 221-501 (509)
13 KOG0127 Nucleolar protein fibr 100.0 4.8E-31 1E-35 229.6 20.1 274 1-283 3-380 (678)
14 TIGR01648 hnRNP-R-Q heterogene 100.0 1.9E-30 4.1E-35 236.9 22.7 207 49-282 95-308 (578)
15 KOG0144 RNA-binding protein CU 100.0 2.1E-30 4.5E-35 220.0 14.6 170 97-283 32-208 (510)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8.8E-29 1.9E-33 226.6 26.5 177 98-281 274-480 (481)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.7E-28 5.8E-33 223.4 25.6 221 52-281 37-351 (481)
18 TIGR01622 SF-CC1 splicing fact 100.0 2.4E-28 5.3E-33 223.5 25.2 227 49-280 127-447 (457)
19 TIGR01648 hnRNP-R-Q heterogene 100.0 4.7E-29 1E-33 227.8 19.6 192 62-282 18-223 (578)
20 KOG0131 Splicing factor 3b, su 100.0 1.4E-29 3.1E-34 192.1 11.9 170 97-282 7-178 (203)
21 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.8E-28 3.9E-33 227.3 20.4 178 96-280 172-374 (509)
22 KOG0127 Nucleolar protein fibr 100.0 1.7E-28 3.7E-33 213.8 16.7 183 99-282 5-197 (678)
23 KOG0145 RNA-binding protein EL 100.0 3.1E-28 6.6E-33 194.5 14.2 168 99-283 41-211 (360)
24 TIGR01645 half-pint poly-U bin 99.9 2E-25 4.4E-30 204.3 24.5 130 49-178 145-283 (612)
25 KOG0144 RNA-binding protein CU 99.9 1.4E-26 3E-31 196.9 15.3 239 45-284 68-507 (510)
26 KOG0123 Polyadenylate-binding 99.9 2.7E-26 5.8E-31 200.9 17.6 222 38-282 25-247 (369)
27 KOG0124 Polypyrimidine tract-b 99.9 4.9E-27 1.1E-31 195.8 9.7 177 99-281 113-290 (544)
28 KOG0109 RNA-binding protein LA 99.9 1.1E-25 2.4E-30 182.5 10.6 147 100-281 3-150 (346)
29 KOG0123 Polyadenylate-binding 99.9 8E-25 1.7E-29 191.7 14.3 228 52-282 115-350 (369)
30 KOG0110 RNA-binding protein (R 99.9 6E-25 1.3E-29 197.4 13.3 176 98-281 514-693 (725)
31 KOG0146 RNA-binding protein ET 99.9 1.2E-24 2.7E-29 174.6 11.7 186 98-284 18-368 (371)
32 KOG4205 RNA-binding protein mu 99.9 2.1E-24 4.6E-29 182.8 11.8 174 98-283 5-178 (311)
33 KOG0147 Transcriptional coacti 99.9 2.2E-24 4.7E-29 189.0 7.3 184 94-282 174-359 (549)
34 KOG0148 Apoptosis-promoting RN 99.9 4.3E-23 9.4E-28 166.0 10.7 139 97-282 4-143 (321)
35 KOG0147 Transcriptional coacti 99.9 1.3E-21 2.8E-26 171.7 15.1 224 49-278 217-525 (549)
36 KOG0124 Polypyrimidine tract-b 99.9 5.9E-21 1.3E-25 159.6 16.7 229 49-277 151-531 (544)
37 KOG4206 Spliceosomal protein s 99.8 5.6E-19 1.2E-23 139.7 16.6 172 100-279 10-220 (221)
38 KOG0105 Alternative splicing f 99.8 1.1E-18 2.5E-23 133.1 16.8 169 98-276 5-185 (241)
39 TIGR01659 sex-lethal sex-letha 99.8 2.7E-19 5.9E-24 156.1 14.8 130 49-180 145-276 (346)
40 KOG4212 RNA-binding protein hn 99.8 1.3E-18 2.8E-23 148.7 17.0 179 98-278 43-291 (608)
41 PLN03134 glycine-rich RNA-bind 99.8 5.1E-19 1.1E-23 135.7 11.4 85 97-181 32-116 (144)
42 PLN03134 glycine-rich RNA-bind 99.8 1.8E-18 3.9E-23 132.7 11.5 83 200-282 32-115 (144)
43 KOG1548 Transcription elongati 99.8 3E-17 6.5E-22 136.7 19.1 182 96-282 131-353 (382)
44 KOG4211 Splicing factor hnRNP- 99.8 1.6E-17 3.4E-22 144.4 16.8 171 98-278 9-179 (510)
45 KOG1457 RNA binding protein (c 99.7 2.2E-16 4.8E-21 124.1 14.3 167 98-268 33-273 (284)
46 KOG0106 Alternative splicing f 99.7 2.1E-17 4.5E-22 132.1 7.8 162 100-277 2-167 (216)
47 KOG0120 Splicing factor U2AF, 99.7 5.2E-17 1.1E-21 144.5 10.6 185 96-280 286-491 (500)
48 PF00076 RRM_1: RNA recognitio 99.7 4.5E-17 9.7E-22 109.7 7.9 70 102-172 1-70 (70)
49 COG0724 RNA-binding proteins ( 99.7 2.6E-16 5.7E-21 134.0 14.3 163 99-261 115-284 (306)
50 KOG0122 Translation initiation 99.7 8.4E-17 1.8E-21 128.2 9.9 86 94-179 184-269 (270)
51 KOG0110 RNA-binding protein (R 99.7 2.2E-16 4.8E-21 142.7 13.3 181 95-281 381-598 (725)
52 KOG0121 Nuclear cap-binding pr 99.7 1.8E-16 4E-21 114.0 6.9 82 98-179 35-116 (153)
53 KOG0131 Splicing factor 3b, su 99.7 3.5E-16 7.5E-21 119.4 8.0 133 49-182 47-180 (203)
54 PF00076 RRM_1: RNA recognitio 99.6 7.8E-16 1.7E-20 103.6 8.3 69 205-274 1-70 (70)
55 PF14259 RRM_6: RNA recognitio 99.6 1.1E-15 2.4E-20 103.0 8.6 70 102-172 1-70 (70)
56 KOG0149 Predicted RNA-binding 99.6 5.1E-16 1.1E-20 123.3 7.3 79 99-178 12-90 (247)
57 KOG0122 Translation initiation 99.6 1.4E-15 2.9E-20 121.4 9.4 82 201-282 188-270 (270)
58 KOG0125 Ataxin 2-binding prote 99.6 1E-15 2.2E-20 126.8 8.4 84 94-179 91-174 (376)
59 PLN03120 nucleic acid binding 99.6 2.8E-15 6.1E-20 123.1 10.6 78 99-180 4-81 (260)
60 KOG1190 Polypyrimidine tract-b 99.6 2.7E-14 5.8E-19 121.6 16.7 173 99-280 297-490 (492)
61 KOG0125 Ataxin 2-binding prote 99.6 1.5E-15 3.3E-20 125.9 8.6 80 200-281 94-174 (376)
62 KOG0113 U1 small nuclear ribon 99.6 4.1E-15 8.9E-20 121.8 9.9 86 92-177 94-179 (335)
63 KOG0107 Alternative splicing f 99.6 2.8E-15 6.1E-20 113.8 7.9 78 99-181 10-87 (195)
64 PLN03120 nucleic acid binding 99.6 5.7E-15 1.2E-19 121.3 10.2 76 202-280 4-79 (260)
65 KOG0149 Predicted RNA-binding 99.6 2.2E-15 4.8E-20 119.7 7.5 79 201-279 11-89 (247)
66 PF14259 RRM_6: RNA recognitio 99.6 7.9E-15 1.7E-19 98.8 8.9 69 205-274 1-70 (70)
67 KOG4207 Predicted splicing fac 99.6 2.2E-15 4.8E-20 117.2 5.9 83 197-279 8-91 (256)
68 PLN03121 nucleic acid binding 99.6 1.7E-14 3.7E-19 116.6 10.1 79 98-180 4-82 (243)
69 KOG4207 Predicted splicing fac 99.6 4.2E-15 9E-20 115.7 6.1 80 99-178 13-92 (256)
70 KOG0130 RNA-binding protein RB 99.6 1.3E-14 2.8E-19 105.4 7.6 87 95-181 68-154 (170)
71 KOG0126 Predicted RNA-binding 99.6 6.6E-16 1.4E-20 117.8 0.9 84 98-181 34-117 (219)
72 PLN03213 repressor of silencin 99.6 1.8E-14 3.9E-19 125.5 9.5 77 98-178 9-87 (759)
73 KOG0126 Predicted RNA-binding 99.5 8E-16 1.7E-20 117.4 0.8 77 202-278 35-112 (219)
74 KOG0114 Predicted RNA-binding 99.5 5.9E-14 1.3E-18 97.4 9.9 82 95-179 14-95 (124)
75 smart00362 RRM_2 RNA recogniti 99.5 6.5E-14 1.4E-18 94.0 8.7 72 101-174 1-72 (72)
76 KOG4211 Splicing factor hnRNP- 99.5 1.5E-12 3.3E-17 113.7 18.8 227 46-276 42-353 (510)
77 KOG0108 mRNA cleavage and poly 99.5 2.8E-14 6.1E-19 126.5 8.3 82 100-181 19-100 (435)
78 KOG0113 U1 small nuclear ribon 99.5 8E-14 1.7E-18 114.3 9.9 83 200-282 99-182 (335)
79 PLN03213 repressor of silencin 99.5 7E-14 1.5E-18 121.8 9.2 77 201-281 9-88 (759)
80 smart00360 RRM RNA recognition 99.5 1.1E-13 2.4E-18 92.5 8.4 71 104-174 1-71 (71)
81 KOG0111 Cyclophilin-type pepti 99.5 1.5E-14 3.2E-19 113.7 4.5 82 200-281 8-90 (298)
82 KOG0120 Splicing factor U2AF, 99.5 5.8E-14 1.3E-18 125.2 8.7 177 98-281 174-369 (500)
83 KOG4212 RNA-binding protein hn 99.5 5.2E-12 1.1E-16 108.7 19.3 71 203-278 537-608 (608)
84 KOG0111 Cyclophilin-type pepti 99.5 2.8E-14 6.1E-19 112.1 5.1 85 98-182 9-93 (298)
85 PLN03121 nucleic acid binding 99.5 2.6E-13 5.7E-18 109.8 10.6 76 201-279 4-79 (243)
86 KOG1190 Polypyrimidine tract-b 99.5 1.8E-12 3.9E-17 110.7 15.2 171 100-280 151-372 (492)
87 smart00362 RRM_2 RNA recogniti 99.5 3.1E-13 6.7E-18 90.6 8.7 71 204-276 1-72 (72)
88 KOG0121 Nuclear cap-binding pr 99.5 1.2E-13 2.6E-18 99.5 6.8 79 201-279 35-114 (153)
89 KOG1456 Heterogeneous nuclear 99.5 2.5E-12 5.5E-17 108.6 15.0 166 95-281 27-199 (494)
90 smart00360 RRM RNA recognition 99.5 4E-13 8.7E-18 89.7 8.3 70 207-276 1-71 (71)
91 cd00590 RRM RRM (RNA recogniti 99.4 9E-13 2E-17 88.8 9.4 74 101-175 1-74 (74)
92 KOG0130 RNA-binding protein RB 99.4 2.8E-13 6.1E-18 98.5 6.5 81 200-280 70-151 (170)
93 KOG0107 Alternative splicing f 99.4 5.1E-13 1.1E-17 101.6 8.0 77 200-281 8-85 (195)
94 KOG0108 mRNA cleavage and poly 99.4 4.1E-13 8.9E-18 119.1 8.3 81 203-283 19-100 (435)
95 KOG1456 Heterogeneous nuclear 99.4 2.2E-11 4.8E-16 103.0 17.8 180 95-281 283-491 (494)
96 KOG0114 Predicted RNA-binding 99.4 2.2E-12 4.7E-17 89.7 9.5 78 200-280 16-94 (124)
97 KOG0129 Predicted RNA-binding 99.4 1.5E-11 3.2E-16 108.3 16.4 179 96-279 256-452 (520)
98 cd00590 RRM RRM (RNA recogniti 99.4 3.4E-12 7.4E-17 86.0 9.5 73 204-277 1-74 (74)
99 KOG1365 RNA-binding protein Fu 99.4 1.2E-12 2.7E-17 110.8 8.2 176 100-278 162-359 (508)
100 smart00361 RRM_1 RNA recogniti 99.4 1.8E-12 4E-17 87.0 7.2 61 113-173 2-69 (70)
101 COG0724 RNA-binding proteins ( 99.4 2.8E-12 6.2E-17 109.1 10.0 78 202-279 115-193 (306)
102 smart00361 RRM_1 RNA recogniti 99.4 2.8E-12 6.1E-17 86.1 7.6 61 216-276 2-70 (70)
103 PF13893 RRM_5: RNA recognitio 99.4 3.8E-12 8.3E-17 81.6 7.3 55 219-278 1-56 (56)
104 KOG4205 RNA-binding protein mu 99.3 2.9E-12 6.3E-17 109.1 8.2 203 49-265 44-256 (311)
105 PF13893 RRM_5: RNA recognitio 99.3 5.4E-12 1.2E-16 80.9 7.5 56 116-176 1-56 (56)
106 KOG0146 RNA-binding protein ET 99.3 2.1E-12 4.5E-17 104.6 5.9 89 93-181 279-367 (371)
107 KOG0415 Predicted peptidyl pro 99.3 2.3E-12 4.9E-17 108.1 6.1 83 96-178 236-318 (479)
108 KOG0109 RNA-binding protein LA 99.3 3.8E-12 8.2E-17 104.3 6.7 114 53-178 36-149 (346)
109 KOG4206 Spliceosomal protein s 99.3 7.1E-12 1.5E-16 99.6 7.8 80 201-283 8-92 (221)
110 KOG4210 Nuclear localization s 99.3 3E-12 6.5E-17 108.7 5.9 179 98-283 87-266 (285)
111 KOG4208 Nucleolar RNA-binding 99.3 1.2E-11 2.7E-16 96.7 8.6 83 97-179 47-130 (214)
112 KOG0105 Alternative splicing f 99.3 6.9E-12 1.5E-16 96.3 6.9 78 201-281 5-83 (241)
113 KOG4454 RNA binding protein (R 99.2 2.3E-12 5E-17 101.4 1.3 143 97-268 7-150 (267)
114 KOG0128 RNA-binding protein SA 99.2 1.6E-12 3.5E-17 120.1 -1.9 146 99-279 667-813 (881)
115 KOG4208 Nucleolar RNA-binding 99.2 1.2E-10 2.6E-15 91.2 8.0 80 201-280 48-129 (214)
116 KOG0415 Predicted peptidyl pro 99.1 7.9E-11 1.7E-15 99.0 6.1 81 200-280 237-318 (479)
117 KOG0132 RNA polymerase II C-te 99.1 3E-10 6.5E-15 104.3 10.1 108 99-224 421-528 (894)
118 KOG0226 RNA-binding proteins [ 99.1 3.4E-10 7.3E-15 91.3 8.2 167 100-278 97-267 (290)
119 KOG0153 Predicted RNA-binding 99.0 1.3E-09 2.8E-14 91.7 8.1 78 198-281 224-303 (377)
120 KOG4661 Hsp27-ERE-TATA-binding 99.0 1E-09 2.2E-14 97.6 7.7 82 97-178 403-484 (940)
121 KOG0153 Predicted RNA-binding 98.9 3.8E-09 8.3E-14 88.9 7.5 78 95-178 224-302 (377)
122 KOG0132 RNA polymerase II C-te 98.9 2.9E-09 6.4E-14 97.9 7.4 75 201-281 420-495 (894)
123 KOG0226 RNA-binding proteins [ 98.9 1.2E-08 2.5E-13 82.6 8.7 81 96-176 187-267 (290)
124 KOG0533 RRM motif-containing p 98.9 1.3E-08 2.9E-13 83.6 9.0 84 97-181 81-164 (243)
125 KOG0533 RRM motif-containing p 98.9 1.2E-08 2.7E-13 83.8 8.6 82 200-282 81-163 (243)
126 KOG0112 Large RNA-binding prot 98.8 2.9E-09 6.4E-14 99.4 4.6 160 96-281 369-531 (975)
127 PF04059 RRM_2: RNA recognitio 98.8 3.7E-08 8E-13 69.5 8.9 77 203-279 2-85 (97)
128 KOG1365 RNA-binding protein Fu 98.8 2.8E-08 6.1E-13 84.7 9.6 173 98-273 59-235 (508)
129 KOG4209 Splicing factor RNPS1, 98.8 9.9E-09 2.2E-13 84.5 6.3 81 200-280 99-179 (231)
130 KOG4676 Splicing factor, argin 98.8 3.9E-09 8.4E-14 90.1 4.0 165 100-269 8-214 (479)
131 KOG0116 RasGAP SH3 binding pro 98.8 1.6E-08 3.4E-13 89.7 7.4 81 97-178 286-366 (419)
132 PF04059 RRM_2: RNA recognitio 98.7 1.1E-07 2.4E-12 67.1 9.3 78 100-177 2-85 (97)
133 KOG4209 Splicing factor RNPS1, 98.7 2.2E-08 4.8E-13 82.5 6.5 85 94-179 96-180 (231)
134 KOG4660 Protein Mei2, essentia 98.7 1.3E-08 2.7E-13 90.9 5.2 173 96-280 72-249 (549)
135 KOG4307 RNA binding protein RB 98.7 2.3E-07 5E-12 84.7 12.8 178 97-277 309-510 (944)
136 KOG4661 Hsp27-ERE-TATA-binding 98.7 3.2E-08 7E-13 88.4 7.1 81 200-280 403-484 (940)
137 KOG1548 Transcription elongati 98.6 1.5E-07 3.2E-12 79.4 8.4 78 201-279 133-219 (382)
138 KOG0116 RasGAP SH3 binding pro 98.6 1E-07 2.2E-12 84.6 7.4 79 202-280 288-366 (419)
139 KOG1457 RNA binding protein (c 98.6 3.3E-07 7.2E-12 72.9 8.8 81 202-282 34-119 (284)
140 KOG0151 Predicted splicing reg 98.6 1.4E-07 3E-12 86.3 7.5 82 96-177 171-255 (877)
141 KOG2193 IGF-II mRNA-binding pr 98.6 6.8E-09 1.5E-13 89.4 -1.5 151 100-279 2-155 (584)
142 KOG4454 RNA binding protein (R 98.5 3E-08 6.4E-13 78.5 1.9 76 202-279 9-85 (267)
143 KOG0106 Alternative splicing f 98.5 2.2E-07 4.7E-12 74.9 4.7 117 52-176 34-168 (216)
144 KOG4660 Protein Mei2, essentia 98.4 1.3E-07 2.9E-12 84.5 3.3 70 200-274 73-143 (549)
145 PF11608 Limkain-b1: Limkain b 98.3 2.7E-06 5.9E-11 57.3 6.3 68 100-177 3-75 (90)
146 KOG0151 Predicted splicing reg 98.2 1.9E-06 4E-11 79.2 6.1 80 201-280 173-256 (877)
147 KOG4210 Nuclear localization s 98.2 2.7E-06 5.9E-11 72.5 6.5 130 50-180 127-265 (285)
148 KOG1995 Conserved Zn-finger pr 98.2 1.1E-06 2.4E-11 74.8 3.8 83 200-282 64-155 (351)
149 PF11608 Limkain-b1: Limkain b 98.2 1E-05 2.2E-10 54.6 7.3 68 203-280 3-76 (90)
150 PF08777 RRM_3: RNA binding mo 98.1 8E-06 1.7E-10 59.0 6.5 70 100-175 2-76 (105)
151 KOG4307 RNA binding protein RB 98.1 8.7E-06 1.9E-10 74.8 7.8 75 203-277 868-943 (944)
152 KOG3152 TBP-binding protein, a 98.1 1.8E-06 4E-11 70.1 3.0 73 98-170 73-157 (278)
153 COG5175 MOT2 Transcriptional r 98.1 1.6E-05 3.5E-10 67.1 8.0 80 98-177 113-201 (480)
154 PF08777 RRM_3: RNA binding mo 98.1 1.4E-05 3.1E-10 57.7 6.5 68 203-276 2-75 (105)
155 KOG2314 Translation initiation 98.0 1.1E-05 2.4E-10 72.5 6.6 81 98-179 57-144 (698)
156 KOG0128 RNA-binding protein SA 98.0 2.2E-07 4.8E-12 86.8 -4.5 210 53-270 520-735 (881)
157 KOG1995 Conserved Zn-finger pr 97.9 1E-05 2.3E-10 69.0 4.0 84 97-180 64-155 (351)
158 KOG4849 mRNA cleavage factor I 97.9 1E-05 2.3E-10 68.5 3.5 78 99-176 80-159 (498)
159 COG5175 MOT2 Transcriptional r 97.9 4.2E-05 9.1E-10 64.7 6.7 81 201-281 113-203 (480)
160 KOG3152 TBP-binding protein, a 97.7 1.9E-05 4.1E-10 64.3 2.6 70 203-272 75-157 (278)
161 KOG1996 mRNA splicing factor [ 97.7 8.6E-05 1.9E-09 61.7 6.3 64 216-279 300-365 (378)
162 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00018 3.8E-09 51.3 6.5 77 202-279 6-90 (100)
163 KOG0115 RNA-binding protein p5 97.7 0.00018 3.9E-09 58.8 7.0 83 154-261 7-89 (275)
164 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00035 7.5E-09 43.7 4.7 52 100-158 2-53 (53)
165 PF08952 DUF1866: Domain of un 97.4 0.00048 1E-08 52.1 6.1 56 217-280 51-106 (146)
166 KOG2314 Translation initiation 97.4 0.00033 7.2E-09 63.3 5.6 74 203-277 59-140 (698)
167 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00056 1.2E-08 42.8 4.8 52 203-261 2-53 (53)
168 KOG2202 U2 snRNP splicing fact 97.3 0.00013 2.7E-09 59.7 1.7 61 116-177 85-146 (260)
169 KOG4849 mRNA cleavage factor I 97.2 0.00024 5.1E-09 60.5 3.1 75 202-276 80-157 (498)
170 KOG1855 Predicted RNA-binding 97.2 0.00036 7.7E-09 61.1 4.0 64 201-264 230-306 (484)
171 KOG0129 Predicted RNA-binding 97.2 0.0012 2.7E-08 59.1 7.0 69 92-160 363-432 (520)
172 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0024 5.1E-08 45.5 6.3 77 99-177 6-90 (100)
173 KOG2416 Acinus (induces apopto 97.0 0.00052 1.1E-08 62.4 3.3 74 98-177 443-520 (718)
174 KOG1855 Predicted RNA-binding 97.0 0.0011 2.5E-08 58.0 5.1 76 90-165 222-310 (484)
175 KOG1996 mRNA splicing factor [ 96.9 0.0029 6.3E-08 52.8 6.2 64 114-177 301-365 (378)
176 PF08952 DUF1866: Domain of un 96.9 0.0036 7.8E-08 47.4 6.1 56 115-179 52-107 (146)
177 KOG2193 IGF-II mRNA-binding pr 96.8 5.2E-05 1.1E-09 66.0 -4.7 128 43-177 27-155 (584)
178 KOG2202 U2 snRNP splicing fact 96.7 0.0007 1.5E-08 55.5 1.4 61 217-278 83-145 (260)
179 PF10309 DUF2414: Protein of u 96.6 0.013 2.8E-07 37.7 6.5 54 99-161 5-62 (62)
180 KOG0112 Large RNA-binding prot 96.5 0.0057 1.2E-07 58.5 6.0 117 52-178 412-530 (975)
181 PF08675 RNA_bind: RNA binding 96.5 0.025 5.3E-07 38.5 7.4 55 99-162 9-63 (87)
182 KOG4676 Splicing factor, argin 96.5 0.005 1.1E-07 53.5 5.1 78 202-279 7-87 (479)
183 KOG2416 Acinus (induces apopto 96.3 0.003 6.6E-08 57.6 3.2 75 200-280 442-521 (718)
184 KOG2068 MOT2 transcription fac 96.2 0.0024 5.2E-08 54.5 1.7 79 100-179 78-163 (327)
185 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0075 1.6E-07 47.9 4.1 70 98-167 6-81 (176)
186 PF07576 BRAP2: BRCA1-associat 96.0 0.12 2.7E-06 37.5 9.6 67 100-168 13-81 (110)
187 PF07576 BRAP2: BRCA1-associat 96.0 0.13 2.8E-06 37.4 9.5 67 202-270 13-81 (110)
188 PF10309 DUF2414: Protein of u 95.9 0.041 8.9E-07 35.4 6.0 52 202-261 5-59 (62)
189 KOG0115 RNA-binding protein p5 95.9 0.011 2.5E-07 48.5 4.2 62 100-162 32-93 (275)
190 PF15023 DUF4523: Protein of u 95.8 0.056 1.2E-06 40.6 7.2 74 96-177 83-160 (166)
191 KOG2591 c-Mpl binding protein, 95.8 0.025 5.5E-07 51.4 6.2 81 87-174 163-247 (684)
192 KOG2253 U1 snRNP complex, subu 95.5 0.014 3E-07 54.1 3.8 121 96-225 37-158 (668)
193 KOG2135 Proteins containing th 95.5 0.0071 1.5E-07 53.8 1.8 68 207-280 377-445 (526)
194 PF15023 DUF4523: Protein of u 95.3 0.052 1.1E-06 40.8 5.4 72 200-279 84-160 (166)
195 KOG0804 Cytoplasmic Zn-finger 94.9 0.25 5.4E-06 44.1 9.5 68 99-168 74-142 (493)
196 KOG2068 MOT2 transcription fac 94.9 0.013 2.8E-07 50.2 1.6 81 203-283 78-165 (327)
197 PF11767 SET_assoc: Histone ly 94.9 0.1 2.3E-06 34.0 5.3 55 110-173 11-65 (66)
198 KOG4285 Mitotic phosphoprotein 94.7 0.084 1.8E-06 44.6 5.8 72 203-281 198-270 (350)
199 PF04847 Calcipressin: Calcipr 94.7 0.059 1.3E-06 43.0 4.7 61 214-280 7-70 (184)
200 PF08675 RNA_bind: RNA binding 94.3 0.21 4.5E-06 34.1 5.9 53 203-264 10-63 (87)
201 KOG2135 Proteins containing th 94.3 0.026 5.7E-07 50.4 2.1 75 98-179 371-446 (526)
202 PF10567 Nab6_mRNP_bdg: RNA-re 94.2 3.1 6.8E-05 35.3 13.9 170 98-268 14-218 (309)
203 PF07292 NID: Nmi/IFP 35 domai 94.0 0.13 2.8E-06 35.6 4.6 72 144-224 1-74 (88)
204 PF04847 Calcipressin: Calcipr 93.8 0.14 3.1E-06 40.8 5.3 62 112-179 8-71 (184)
205 KOG2591 c-Mpl binding protein, 93.7 0.29 6.3E-06 44.8 7.4 54 201-261 174-229 (684)
206 PF03467 Smg4_UPF3: Smg-4/UPF3 92.9 0.14 3E-06 40.6 3.9 69 202-270 7-82 (176)
207 PF11767 SET_assoc: Histone ly 92.5 0.61 1.3E-05 30.4 5.8 54 213-275 11-65 (66)
208 KOG4574 RNA-binding protein (c 92.4 0.079 1.7E-06 50.7 2.1 70 205-280 301-373 (1007)
209 PF03880 DbpA: DbpA RNA bindin 92.0 0.86 1.9E-05 30.4 6.3 58 110-176 12-74 (74)
210 KOG0804 Cytoplasmic Zn-finger 92.0 0.49 1.1E-05 42.4 6.3 67 202-270 74-142 (493)
211 KOG4574 RNA-binding protein (c 91.9 0.32 7E-06 46.8 5.4 73 100-178 299-373 (1007)
212 KOG4285 Mitotic phosphoprotein 91.6 0.77 1.7E-05 39.0 6.7 75 99-181 197-272 (350)
213 PF03880 DbpA: DbpA RNA bindin 87.8 2.5 5.4E-05 28.2 5.9 57 213-278 12-74 (74)
214 KOG2253 U1 snRNP complex, subu 80.6 1.3 2.9E-05 41.6 2.6 69 200-277 38-107 (668)
215 PF14111 DUF4283: Domain of un 79.7 3.2 7E-05 31.7 4.2 118 102-236 18-139 (153)
216 KOG2295 C2H2 Zn-finger protein 73.4 0.5 1.1E-05 43.4 -2.1 73 97-169 229-301 (648)
217 KOG2318 Uncharacterized conser 71.7 19 0.00041 33.7 7.4 80 198-277 170-304 (650)
218 PF02714 DUF221: Domain of unk 70.6 9.6 0.00021 33.3 5.3 56 144-224 1-56 (325)
219 KOG2318 Uncharacterized conser 68.0 30 0.00066 32.4 7.8 81 96-176 171-305 (650)
220 PF03468 XS: XS domain; Inter 64.7 12 0.00025 27.5 3.8 46 214-262 29-75 (116)
221 KOG4483 Uncharacterized conser 64.1 18 0.0004 32.2 5.5 57 200-263 389-446 (528)
222 KOG4019 Calcineurin-mediated s 63.4 6.6 0.00014 31.0 2.4 75 100-180 11-91 (193)
223 KOG4410 5-formyltetrahydrofola 60.3 17 0.00037 30.9 4.4 48 100-152 331-378 (396)
224 smart00596 PRE_C2HC PRE_C2HC d 59.6 15 0.00032 24.1 3.2 61 114-177 2-63 (69)
225 KOG4483 Uncharacterized conser 58.3 39 0.00085 30.2 6.5 56 98-161 390-446 (528)
226 KOG2891 Surface glycoprotein [ 56.8 12 0.00027 31.6 3.1 83 199-281 146-268 (445)
227 PF07530 PRE_C2HC: Associated 56.5 18 0.00039 23.7 3.3 62 114-178 2-64 (68)
228 KOG2891 Surface glycoprotein [ 55.7 11 0.00024 31.9 2.6 73 94-166 144-247 (445)
229 PF07530 PRE_C2HC: Associated 52.7 35 0.00075 22.3 4.2 65 217-283 2-67 (68)
230 KOG4213 RNA-binding protein La 52.5 20 0.00043 28.3 3.4 57 98-159 110-168 (205)
231 KOG4365 Uncharacterized conser 49.1 3.7 8E-05 36.9 -1.1 77 100-177 4-80 (572)
232 PF10567 Nab6_mRNP_bdg: RNA-re 47.7 35 0.00075 29.3 4.4 77 202-278 15-105 (309)
233 PF03468 XS: XS domain; Inter 47.2 20 0.00044 26.2 2.7 51 101-154 10-69 (116)
234 PF07292 NID: Nmi/IFP 35 domai 45.5 14 0.00031 25.6 1.5 23 98-120 51-73 (88)
235 PF15513 DUF4651: Domain of un 43.8 50 0.0011 21.2 3.7 19 114-132 9-27 (62)
236 KOG1295 Nonsense-mediated deca 43.8 26 0.00055 31.1 3.2 67 100-166 8-77 (376)
237 KOG4019 Calcineurin-mediated s 43.2 41 0.00088 26.7 3.9 72 203-280 11-89 (193)
238 TIGR03636 L23_arch archaeal ri 42.6 85 0.0018 21.1 4.9 55 204-261 15-71 (77)
239 smart00596 PRE_C2HC PRE_C2HC d 42.2 49 0.0011 21.8 3.5 64 217-282 2-66 (69)
240 COG5193 LHP1 La protein, small 39.8 15 0.00033 32.7 1.2 61 98-158 173-243 (438)
241 KOG2295 C2H2 Zn-finger protein 37.2 5 0.00011 37.1 -2.2 71 200-270 229-300 (648)
242 KOG4365 Uncharacterized conser 37.0 7.2 0.00016 35.1 -1.2 75 204-279 5-80 (572)
243 PRK14548 50S ribosomal protein 36.9 1.2E+02 0.0027 20.7 5.1 54 205-261 23-78 (84)
244 KOG4410 5-formyltetrahydrofola 36.4 1.4E+02 0.0029 25.7 6.1 48 202-254 330-377 (396)
245 KOG3424 40S ribosomal protein 33.7 1.2E+02 0.0026 22.3 4.7 46 110-156 34-84 (132)
246 PF11823 DUF3343: Protein of u 33.4 65 0.0014 21.1 3.3 29 142-170 2-30 (73)
247 KOG3702 Nuclear polyadenylated 33.2 88 0.0019 30.0 5.0 73 101-174 513-585 (681)
248 COG5193 LHP1 La protein, small 30.0 27 0.00059 31.2 1.2 60 202-261 174-243 (438)
249 PRK13259 regulatory protein Sp 29.6 1.1E+02 0.0024 21.5 3.9 26 228-253 2-27 (94)
250 PF04026 SpoVG: SpoVG; InterP 29.1 1.2E+02 0.0027 20.7 4.1 26 228-253 2-27 (84)
251 PF03439 Spt5-NGN: Early trans 28.7 85 0.0018 21.3 3.3 24 140-163 43-66 (84)
252 PF09707 Cas_Cas2CT1978: CRISP 27.7 1.4E+02 0.003 20.6 4.1 47 100-149 26-72 (86)
253 KOG2675 Adenylate cyclase-asso 26.9 58 0.0013 29.6 2.7 13 247-259 453-465 (480)
254 CHL00030 rpl23 ribosomal prote 25.2 2.2E+02 0.0047 19.9 4.8 35 204-238 20-56 (93)
255 COG0030 KsgA Dimethyladenosine 25.1 94 0.002 26.4 3.5 33 100-132 96-128 (259)
256 KOG0156 Cytochrome P450 CYP2 s 24.5 1.3E+02 0.0029 28.1 4.8 60 102-171 35-97 (489)
257 COG5584 Predicted small secret 24.1 1.6E+02 0.0034 20.8 3.8 32 106-137 29-60 (103)
258 PF11411 DNA_ligase_IV: DNA li 22.6 58 0.0013 18.4 1.2 15 213-227 20-34 (36)
259 PF05189 RTC_insert: RNA 3'-te 22.6 2.4E+02 0.0053 19.8 4.9 50 100-149 11-65 (103)
260 PRK11558 putative ssRNA endonu 21.7 1.5E+02 0.0034 20.9 3.5 48 100-150 28-75 (97)
261 PRK01178 rps24e 30S ribosomal 21.5 3.1E+02 0.0067 19.5 5.6 47 213-260 30-81 (99)
262 KOG4008 rRNA processing protei 20.8 63 0.0014 26.8 1.6 31 99-129 40-70 (261)
263 PRK11230 glycolate oxidase sub 20.6 3.7E+02 0.008 25.2 6.9 62 100-162 190-255 (499)
264 cd04908 ACT_Bt0572_1 N-termina 20.6 2.3E+02 0.005 17.7 7.7 51 214-268 13-64 (66)
265 KOG4213 RNA-binding protein La 20.4 57 0.0012 25.9 1.2 62 203-268 112-174 (205)
266 PTZ00191 60S ribosomal protein 20.4 3E+02 0.0064 21.1 5.0 53 204-259 83-137 (145)
267 PRK12280 rplW 50S ribosomal pr 20.3 3E+02 0.0064 21.4 5.1 34 204-237 23-58 (158)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6e-37 Score=271.36 Aligned_cols=233 Identities=24% Similarity=0.393 Sum_probs=189.1
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 128 (284)
.++++||+||.+...+++..+.+.+++....+......... ........++|||+|||..+++++|+++|++||.|..
T Consensus 41 ~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~--~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~ 118 (352)
T TIGR01661 41 TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR--PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIIT 118 (352)
T ss_pred CCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec--ccccccccceEEECCccccCCHHHHHHHHhccCCEEE
Confidence 35688999999999999999999999988777654432111 1112234678999999999999999999999999999
Q ss_pred EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC--ceeEEEEcccCCcccccccc-----------c------
Q 023297 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFSIDMNSRTRNAEA-----------L------ 189 (284)
Q Consensus 129 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~~~~~~~~-----------~------ 189 (284)
+.++.+..++.++|||||+|.+.++|++|++.|||..+.| +.|.|.++............ .
T Consensus 119 ~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (352)
T TIGR01661 119 SRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLST 198 (352)
T ss_pred EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccc
Confidence 9999988889999999999999999999999999999877 56788887543311000000 0
Q ss_pred ---------------------------------------------CCCC-------------CCccccCCCcEEEEcCCC
Q 023297 190 ---------------------------------------------ISPP-------------KKIFVYESPHKLYVGNLS 211 (284)
Q Consensus 190 ---------------------------------------------~~~~-------------~~~~~~~~~~~l~v~nl~ 211 (284)
..+. ........+.+|||+|||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~ 278 (352)
T TIGR01661 199 ILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLS 278 (352)
T ss_pred cccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCC
Confidence 0000 000001223479999999
Q ss_pred CCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCCC
Q 023297 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTE 283 (284)
Q Consensus 212 ~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~~ 283 (284)
+.+++++|+++|++||.|.+++|++|..+|.++|||||+|.+.++|.+|+ +|||..|+|+.|+|.|+..|..
T Consensus 279 ~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 279 PDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999999999999999999999999999 6999999999999999998875
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.3e-35 Score=258.22 Aligned_cols=171 Identities=26% Similarity=0.455 Sum_probs=156.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||+++++++|+++|+.||+|.+|+|+.|..+++++|||||+|.++++|++|++.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCH
Q 023297 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254 (284)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 254 (284)
++.+... ....++|||+|||..+++++|+++|++||.|..++|++++.+++++|||||+|.+.
T Consensus 183 ~a~p~~~-----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 183 YARPGGE-----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccccc-----------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 9864221 01246799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhCCCccCC--ceEEEEeccCCC
Q 023297 255 AERDAAL-SLNGTDFRG--RTIIVREGVDRT 282 (284)
Q Consensus 255 ~~A~~a~-~l~g~~~~g--~~l~v~~a~~k~ 282 (284)
++|.+|+ .||+..+.| +.|+|.|+..+.
T Consensus 246 e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 246 EEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 9999999 699998866 689999998653
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=8.5e-35 Score=265.63 Aligned_cols=180 Identities=22% Similarity=0.417 Sum_probs=157.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||+++++++|+++|++||+|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHH
Q 023297 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (284)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 256 (284)
........... .........++|||+||+..+++++|+++|+.||.|..++|.++..+++++|||||+|.+.++
T Consensus 185 ~~~p~a~~~~~------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 185 SNMPQAQPIID------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred ccccccccccc------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 43221111000 000111235789999999999999999999999999999999999899999999999999999
Q ss_pred HHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 257 RDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 257 A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
|..|+ .|||..++|+.|+|.++..+.
T Consensus 259 A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 259 QSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 99999 799999999999999998754
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.6e-34 Score=268.77 Aligned_cols=232 Identities=24% Similarity=0.361 Sum_probs=189.2
Q ss_pred cCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccC---CCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCce
Q 023297 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEE---PRSRARPCELYVCNLPRSFDISELLEMFKPFGTV 126 (284)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i 126 (284)
+.++||+||.+.+.+++..+.+.+|+....+............ .......++|||+|||.++++++|+++|+.||.|
T Consensus 126 g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i 205 (562)
T TIGR01628 126 GKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEI 205 (562)
T ss_pred CCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCE
Confidence 4578999999999999999999999887665544322111111 1133456789999999999999999999999999
Q ss_pred EEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC----CceeEEEEcccCCcccccccccCCC-CCCccccCC
Q 023297 127 LSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG----GREMRVRFSIDMNSRTRNAEALISP-PKKIFVYES 201 (284)
Q Consensus 127 ~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~l~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 201 (284)
.++.++.+ .+|.++|||||+|.+.++|.+|++.|+|..+. |+.|.|.++..+............. .........
T Consensus 206 ~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~ 284 (562)
T TIGR01628 206 TSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQ 284 (562)
T ss_pred EEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccC
Confidence 99999988 46899999999999999999999999999999 9999999886554432111110000 000111234
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~ 280 (284)
.++|||+||+..+++++|+++|++||.|.+++++.+ .+|.++|||||+|.+.++|.+|+ +|||+.++|+.|.|.|+..
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 578999999999999999999999999999999999 58999999999999999999999 7999999999999999998
Q ss_pred CCC
Q 023297 281 RTE 283 (284)
Q Consensus 281 k~~ 283 (284)
+.+
T Consensus 364 k~~ 366 (562)
T TIGR01628 364 KEQ 366 (562)
T ss_pred cHH
Confidence 753
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-34 Score=228.77 Aligned_cols=177 Identities=25% Similarity=0.440 Sum_probs=154.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
..-|||+.|...++-++|++.|.+||+|.++++++|..|++++|||||.|-+.++|++||..|||..+++|.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 258 (284)
+......... .-...-......++++|++|++..++|++|++.|.+||.|.+|+|++++ ||+||.|.+++.|.
T Consensus 142 Kp~e~n~~~l-tfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 142 KPSEMNGKPL-TFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAA 214 (321)
T ss_pred CccccCCCCc-cHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHH
Confidence 7622111110 0000001122467999999999999999999999999999999999884 59999999999999
Q ss_pred HHH-HhCCCccCCceEEEEeccCCC
Q 023297 259 AAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 259 ~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
.|| ++||.++.|..|++.|.+...
T Consensus 215 hAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 215 HAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred HHHHHhcCceeCceEEEEeccccCC
Confidence 999 899999999999999998653
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=9.5e-33 Score=244.50 Aligned_cols=167 Identities=26% Similarity=0.461 Sum_probs=153.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||.++++++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 258 (284)
... ....++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.
T Consensus 83 ~~~-----------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~ 145 (352)
T TIGR01661 83 SSD-----------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEAD 145 (352)
T ss_pred ccc-----------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 321 112467999999999999999999999999999999999888899999999999999999
Q ss_pred HHH-HhCCCccCC--ceEEEEeccCCC
Q 023297 259 AAL-SLNGTDFRG--RTIIVREGVDRT 282 (284)
Q Consensus 259 ~a~-~l~g~~~~g--~~l~v~~a~~k~ 282 (284)
.|+ .|||..+.| ..|.|.|+..+.
T Consensus 146 ~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 146 RAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHhCCCccCCCceeEEEEECCCCC
Confidence 999 699999977 678999987654
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=9.5e-33 Score=258.31 Aligned_cols=221 Identities=28% Similarity=0.397 Sum_probs=187.6
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 128 (284)
..+++||+||.|.+.+++..+.+.+++....+...................++|||+|||.++++++|+++|++||.|.+
T Consensus 38 t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~ 117 (562)
T TIGR01628 38 TRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILS 117 (562)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcce
Confidence 35678999999999999999999999987766654443322222222334578999999999999999999999999999
Q ss_pred EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEc
Q 023297 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208 (284)
Q Consensus 129 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 208 (284)
|++..+ .+|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.......... .......++|||+
T Consensus 118 ~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~------------~~~~~~~~~l~V~ 184 (562)
T TIGR01628 118 CKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHERE------------AAPLKKFTNLYVK 184 (562)
T ss_pred eEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccc------------cccccCCCeEEEe
Confidence 999988 468899999999999999999999999999999999997765433221 0011334789999
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccC----CceEEEEeccCCCC
Q 023297 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR----GRTIIVREGVDRTE 283 (284)
Q Consensus 209 nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~----g~~l~v~~a~~k~~ 283 (284)
||+..+++++|+++|..||.|..+.+..+. +|.++|||||+|.+.++|.+|+ .|||..+. |+.|.|.++..+.+
T Consensus 185 nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 185 NLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh
Confidence 999999999999999999999999999986 7899999999999999999999 69999999 99999999887654
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=217.92 Aligned_cols=236 Identities=24% Similarity=0.363 Sum_probs=193.3
Q ss_pred ccCCCcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCC
Q 023297 45 SCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFG 124 (284)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G 124 (284)
..-..+.+.||+||-++.+++++.+...+||-+......... -.........+.+|||.+||+.||..+|+.+|++||
T Consensus 75 RDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS--yARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fG 152 (360)
T KOG0145|consen 75 RDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS--YARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFG 152 (360)
T ss_pred eccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE--eccCChhhhcccceEEecCCccchHHHHHHHHHHhh
Confidence 455567899999999999999999999999988766654331 112223344568999999999999999999999999
Q ss_pred ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC--ceeEEEEcccCCcccccc--------------cc
Q 023297 125 TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFSIDMNSRTRNA--------------EA 188 (284)
Q Consensus 125 ~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~~~~~~--------------~~ 188 (284)
.|..-+|..|..+|.++|.|||.|...++|+.||+.|||..-.| .+|.|+++.......... ..
T Consensus 153 rIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp 232 (360)
T KOG0145|consen 153 RIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGP 232 (360)
T ss_pred hhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCc
Confidence 99999999999999999999999999999999999999998765 568999986443221100 00
Q ss_pred c--------------------CCCC------------CCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEee
Q 023297 189 L--------------------ISPP------------KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236 (284)
Q Consensus 189 ~--------------------~~~~------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~ 236 (284)
. ...+ .-+.......+|||.||..+.+|.-|.++|.+||.|..|+|++
T Consensus 233 ~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvir 312 (360)
T KOG0145|consen 233 MHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIR 312 (360)
T ss_pred ccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEe
Confidence 0 0000 0001113457899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 237 DRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 237 ~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
|..+.+.|||+||.+.+-++|..|+ +|||..++++.|+|.|...|.
T Consensus 313 D~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 313 DFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred cCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCCC
Confidence 9999999999999999999999999 799999999999999987763
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=6.6e-32 Score=247.01 Aligned_cols=179 Identities=28% Similarity=0.423 Sum_probs=156.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||..+++++|+++|++||.|.+|+++.+..+|+++|||||+|.+.++|.+|| .|+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 345689999999999999999999999999999999999999999999999999999999999 6999999999999988
Q ss_pred cccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHH
Q 023297 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255 (284)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 255 (284)
+............. ........++|||+|||..+++++|+++|++||.|..|.+..+..+|+++|||||+|.+.+
T Consensus 165 ~~~~~~~~~~~~~~-----~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e 239 (457)
T TIGR01622 165 SQAEKNRAAKAATH-----QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE 239 (457)
T ss_pred cchhhhhhhhcccc-----cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH
Confidence 75432221110000 0011123689999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHH-HhCCCccCCceEEEEeccC
Q 023297 256 ERDAAL-SLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 256 ~A~~a~-~l~g~~~~g~~l~v~~a~~ 280 (284)
+|.+|+ .|||..+.|+.|.|.|+..
T Consensus 240 ~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 240 EAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHHHHHhcCCcEECCEEEEEEEccC
Confidence 999999 6999999999999999764
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.1e-32 Score=230.24 Aligned_cols=208 Identities=24% Similarity=0.331 Sum_probs=175.7
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCc-eE
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGT-VL 127 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~ 127 (284)
.+..+||+||.|-..+++.++.+.+|......+......-. ...++|||||||+..++++|.+-+++.++ |.
T Consensus 121 sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S-------van~RLFiG~IPK~k~keeIlee~~kVteGVv 193 (506)
T KOG0117|consen 121 SGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS-------VANCRLFIGNIPKTKKKEEILEEMKKVTEGVV 193 (506)
T ss_pred CCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe-------eecceeEeccCCccccHHHHHHHHHhhCCCee
Confidence 35689999999999999999999999887665554432211 12389999999999999999999999987 77
Q ss_pred EEEEEeCCCC-CCcccEEEEEeCCHHHHHHHHHHhCC--CCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcE
Q 023297 128 SVEVSRNPET-GISRGCGYLTMGSINSAKNAIIALDG--SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204 (284)
Q Consensus 128 ~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (284)
+|.+...+.+ .++||||||+|.++..|..|-..|-. ..+.|+.+.|.|+.+.......... .-+.
T Consensus 194 dVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms------------~VKv 261 (506)
T KOG0117|consen 194 DVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMS------------KVKV 261 (506)
T ss_pred EEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhh------------heee
Confidence 8887765554 89999999999999999999876654 3468999999999876554443222 2367
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCCC
Q 023297 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTE 283 (284)
Q Consensus 205 l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~~ 283 (284)
|||+||+.++|+|.|+++|++||.|++|+.++| ||||+|.+.++|.+|+ ++||++|+|..|.|.+|+|..+
T Consensus 262 LYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 262 LYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 999999999999999999999999999999977 7999999999999999 7999999999999999998653
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.2e-32 Score=229.46 Aligned_cols=182 Identities=25% Similarity=0.438 Sum_probs=160.7
Q ss_pred cCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHH
Q 023297 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153 (284)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~ 153 (284)
++++..+++... ++......++.||||.||.++.|++|..+|++.|+|.+++|++|+.+|.+||||||+|.+.+.
T Consensus 63 ~gqrk~ggPpP~-----weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~ 137 (506)
T KOG0117|consen 63 NGQRKYGGPPPG-----WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEE 137 (506)
T ss_pred ccccccCCCCCc-----ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHH
Confidence 345555555433 445556889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCC-CceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCc-eEE
Q 023297 154 AKNAIIALDGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVS 231 (284)
Q Consensus 154 a~~a~~~l~~~~~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~ 231 (284)
|++|++.||++.|. |+.|.|+.+.. +|+|||+|+|..+++++|.+.+++.++ |.+
T Consensus 138 Aq~Aik~lnn~Eir~GK~igvc~Sva-----------------------n~RLFiG~IPK~k~keeIlee~~kVteGVvd 194 (506)
T KOG0117|consen 138 AQEAIKELNNYEIRPGKLLGVCVSVA-----------------------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVD 194 (506)
T ss_pred HHHHHHHhhCccccCCCEeEEEEeee-----------------------cceeEeccCCccccHHHHHHHHHhhCCCeeE
Confidence 99999999999985 99999999853 588999999999999999999999876 888
Q ss_pred EEEeecCC-CCCcceEEEEEeCCHHHHHHHH-H-hCCC-ccCCceEEEEeccCCCC
Q 023297 232 ARVLHDRK-GQTTRVFGFISFSSDAERDAAL-S-LNGT-DFRGRTIIVREGVDRTE 283 (284)
Q Consensus 232 v~i~~~~~-~~~~~g~afV~f~~~~~A~~a~-~-l~g~-~~~g~~l~v~~a~~k~~ 283 (284)
|.|..... ..++||||||+|.++..|..|. . ++|+ .+-|..+.|.||.++.+
T Consensus 195 Vivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e 250 (506)
T KOG0117|consen 195 VIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEE 250 (506)
T ss_pred EEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccC
Confidence 88876643 5689999999999999999999 5 6666 68999999999998865
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.98 E-value=6.2e-31 Score=243.72 Aligned_cols=229 Identities=15% Similarity=0.202 Sum_probs=175.1
Q ss_pred CCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCc---------------------------cCCCCCCCCCeEE
Q 023297 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSV---------------------------EEPRSRARPCELY 103 (284)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~ 103 (284)
..+||+||.|.+.+++..+. .++|....+.......... .........++||
T Consensus 221 ~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 299 (509)
T TIGR01642 221 KEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIY 299 (509)
T ss_pred CCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEE
Confidence 56799999999999999998 5777654443321110000 0001123458999
Q ss_pred EcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCccc
Q 023297 104 VCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183 (284)
Q Consensus 104 v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 183 (284)
|+|||..+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|++.|+|..++|+.|.|.++.......
T Consensus 300 v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~ 379 (509)
T TIGR01642 300 IGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQA 379 (509)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999986433221
Q ss_pred cccccc---------CC--CCCCccccCCCcEEEEcCCCCCC----------CHHHHHHhhccCCceEEEEEeecC---C
Q 023297 184 RNAEAL---------IS--PPKKIFVYESPHKLYVGNLSWAV----------KPEDLRNHFGRFGTVVSARVLHDR---K 239 (284)
Q Consensus 184 ~~~~~~---------~~--~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~v~i~~~~---~ 239 (284)
...... .. .........+..+|+|.|+.... ..++|+++|++||.|..|.|+++. .
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~ 459 (509)
T TIGR01642 380 TIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRN 459 (509)
T ss_pred CccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCC
Confidence 110000 00 00001112356789999996421 236899999999999999998763 2
Q ss_pred CCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccC
Q 023297 240 GQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 240 ~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~ 280 (284)
.+...|+|||+|.+.++|.+|+ +|||+.|.|+.|.|.|...
T Consensus 460 ~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 460 STPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 4566899999999999999999 7999999999999999754
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=4.8e-31 Score=229.63 Aligned_cols=274 Identities=21% Similarity=0.307 Sum_probs=198.7
Q ss_pred CcccccccccccccccCCCCCCCCCccccccCCceecccccCCcccCCCcCCcceEEEEeecchhhhHHHHhhcCCCCCC
Q 023297 1 MAAATGFLTTSSSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVG 80 (284)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 80 (284)
|+.+|||++.++...+.-.... . +.-.....+--.....-.+..|||+||.|.-.++...+..+.++....|
T Consensus 3 ~~g~TlfV~~lp~~~~~~qL~e---~-----FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~G 74 (678)
T KOG0127|consen 3 KSGATLFVSRLPFSSTGEQLEE---F-----FSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEG 74 (678)
T ss_pred CCCceEEEecCCCccchhHHHH---h-----hhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccc
Confidence 3457888887766655444333 0 0000001111112222234679999999999999999999888866555
Q ss_pred CCCcCCC---------------CCccCCCC---------CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCC
Q 023297 81 GNEVDDD---------------SSVEEPRS---------RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE 136 (284)
Q Consensus 81 ~~~~~~~---------------~~~~~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~ 136 (284)
.....+. ...+.+.. ..+..+|.|+|||+.+.+.+|+.+|++||.|.+|.|++..+
T Consensus 75 r~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d 154 (678)
T KOG0127|consen 75 RILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD 154 (678)
T ss_pred eecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC
Confidence 4322210 00000000 12257899999999999999999999999999999997755
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccc------------------------------
Q 023297 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA------------------------------ 186 (284)
Q Consensus 137 ~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~------------------------------ 186 (284)
|+-+|||||+|....+|.+|++.+|+..|+||++.|.|+.++.......
T Consensus 155 -gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~E 233 (678)
T KOG0127|consen 155 -GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEE 233 (678)
T ss_pred -CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchh
Confidence 5555999999999999999999999999999999999997554321100
Q ss_pred --------cccCC-------------------------------CCC--C--ccccCCCcEEEEcCCCCCCCHHHHHHhh
Q 023297 187 --------EALIS-------------------------------PPK--K--IFVYESPHKLYVGNLSWAVKPEDLRNHF 223 (284)
Q Consensus 187 --------~~~~~-------------------------------~~~--~--~~~~~~~~~l~v~nl~~~~~~~~l~~~f 223 (284)
+.... ... . .....-..+|||+|||+++++++|.+.|
T Consensus 234 d~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~f 313 (678)
T KOG0127|consen 234 DGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHF 313 (678)
T ss_pred cccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHH
Confidence 00000 000 0 0111233789999999999999999999
Q ss_pred ccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-h-----CC-CccCCceEEEEeccCCCC
Q 023297 224 GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L-----NG-TDFRGRTIIVREGVDRTE 283 (284)
Q Consensus 224 ~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~-l-----~g-~~~~g~~l~v~~a~~k~~ 283 (284)
.+||.|..+.|..++.++.++|.|||.|.+..+|+.||. - .| ..+.||.|.|..|..+.+
T Consensus 314 skFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 314 SKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred HhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 999999999999999999999999999999999999993 2 44 678999999999987754
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=1.9e-30 Score=236.88 Aligned_cols=207 Identities=22% Similarity=0.283 Sum_probs=167.1
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCc-eE
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGT-VL 127 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~ 127 (284)
...++||+||.+.+.+++..+.+.+|+.....+...... .....++|||+|||.++++++|.+.|++++. +.
T Consensus 95 sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~-------~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv 167 (578)
T TIGR01648 95 SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC-------ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVV 167 (578)
T ss_pred CCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc-------ccccCceeEeecCCcchhhHHHHHHhhcccCCce
Confidence 356899999999999999999999998766433222111 1123589999999999999999999999864 44
Q ss_pred EEEEE-eCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcE
Q 023297 128 SVEVS-RNPETGISRGCGYLTMGSINSAKNAIIALDG--SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204 (284)
Q Consensus 128 ~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (284)
++.+. .....++++|||||+|.++++|.+|++.|+. ..+.|+.|.|.|+.+...... ......++
T Consensus 168 ~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~------------~~~~~~k~ 235 (578)
T TIGR01648 168 DVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDE------------DVMAKVKI 235 (578)
T ss_pred EEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccccccc------------cccccccE
Confidence 44333 3334578899999999999999999988864 357899999999975432211 11123478
Q ss_pred EEEcCCCCCCCHHHHHHhhccC--CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCC
Q 023297 205 LYVGNLSWAVKPEDLRNHFGRF--GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 205 l~v~nl~~~~~~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k 281 (284)
|||+||++.+++++|+++|++| |.|++|.+++ +||||+|.+.++|.+|+ +|||..|.|+.|+|.|++++
T Consensus 236 LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 236 LYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 9999999999999999999999 9999998764 48999999999999999 69999999999999999886
Q ss_pred C
Q 023297 282 T 282 (284)
Q Consensus 282 ~ 282 (284)
.
T Consensus 308 ~ 308 (578)
T TIGR01648 308 D 308 (578)
T ss_pred C
Confidence 4
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.1e-30 Score=220.00 Aligned_cols=170 Identities=27% Similarity=0.502 Sum_probs=150.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC-C--CceeEE
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV-G--GREMRV 173 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~--g~~l~v 173 (284)
.+.-++|||.||..++|.||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|++... - ..++.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4456899999999999999999999999999999999999999999999999999999999999998664 3 477888
Q ss_pred EEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCC
Q 023297 174 RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253 (284)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 253 (284)
+++......- ...++|||+-|+..++|.+++++|.+||.|++|.|++|. .+.+||+|||.|.+
T Consensus 112 k~Ad~E~er~----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 112 KYADGERERI----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFST 174 (510)
T ss_pred cccchhhhcc----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEeh
Confidence 8886432211 123779999999999999999999999999999999997 89999999999999
Q ss_pred HHHHHHHH-HhCCCc-cCC--ceEEEEeccCCCC
Q 023297 254 DAERDAAL-SLNGTD-FRG--RTIIVREGVDRTE 283 (284)
Q Consensus 254 ~~~A~~a~-~l~g~~-~~g--~~l~v~~a~~k~~ 283 (284)
.+.|..|+ +|||.. ++| .+|.|+||..+.+
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 99999999 799984 555 6799999998875
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=8.8e-29 Score=226.61 Aligned_cols=177 Identities=21% Similarity=0.318 Sum_probs=144.4
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 98 RPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 98 ~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.+++|||+|||. .+++++|+++|+.||.|.+|+++++ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 457999999998 6999999999999999999999986 2699999999999999999999999999999999998
Q ss_pred ccCCcccccc----------ccc-------CCCC---CCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCc--eEEEEE
Q 023297 177 IDMNSRTRNA----------EAL-------ISPP---KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT--VVSARV 234 (284)
Q Consensus 177 ~~~~~~~~~~----------~~~-------~~~~---~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~v~i 234 (284)
.......... ... ...+ .......+..+|||+|||..+++++|+++|+.||. +..+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 5432111100 000 0000 00011235678999999999999999999999998 888888
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCce------EEEEeccCC
Q 023297 235 LHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRT------IIVREGVDR 281 (284)
Q Consensus 235 ~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~------l~v~~a~~k 281 (284)
.... +..+|+|||+|.+.++|..|+ .|||..+.|+. |+|.|++++
T Consensus 429 ~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 429 FPKD--NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ecCC--CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 7553 236899999999999999999 79999999985 999999875
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=2.7e-28 Score=223.41 Aligned_cols=221 Identities=19% Similarity=0.201 Sum_probs=165.5
Q ss_pred CcceEEEEeecchhhhHHHHhh--cCCCCCCCCCcCCCCCc---cC-------CCCCCCCCeEEEcCCCCCCCHHHHHHh
Q 023297 52 PAGFRSVLAVVDEEAVVVEDEI--NGKDNVGGNEVDDDSSV---EE-------PRSRARPCELYVCNLPRSFDISELLEM 119 (284)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~l~v~nl~~~~t~~~l~~~ 119 (284)
.++++||.+.+.+++..+...+ ++....+.......+.. .. ........+|||+||++.+++++|+++
T Consensus 37 ~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~ 116 (481)
T TIGR01649 37 GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQI 116 (481)
T ss_pred CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHH
Confidence 5689999999999999999864 44444444332211110 00 011122347999999999999999999
Q ss_pred hccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC--ceeEEEEcccCCcc------c--------
Q 023297 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFSIDMNSR------T-------- 183 (284)
Q Consensus 120 f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~~------~-------- 183 (284)
|+.||.|.+|.++++.. +|+|||+|.+.++|.+|++.|||..+.| +.|+|.|+....-. .
T Consensus 117 F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~ 192 (481)
T TIGR01649 117 FNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPD 192 (481)
T ss_pred HhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCC
Confidence 99999999999987532 4789999999999999999999999964 58888887632210 0
Q ss_pred ----cc--cc----ccCCC------------------------------------C------------------CCcccc
Q 023297 184 ----RN--AE----ALISP------------------------------------P------------------KKIFVY 199 (284)
Q Consensus 184 ----~~--~~----~~~~~------------------------------------~------------------~~~~~~ 199 (284)
+. .. ..... + ......
T Consensus 193 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (481)
T TIGR01649 193 LPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGG 272 (481)
T ss_pred CCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCC
Confidence 00 00 00000 0 000012
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 200 ESPHKLYVGNLSW-AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 200 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
.+.++|||+||++ .+++++|+++|+.||.|.+|+|+++. +|+|||+|.+.++|..|+ .|||..|.|+.|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3567999999997 69999999999999999999999873 689999999999999999 6999999999999999
Q ss_pred ccCC
Q 023297 278 GVDR 281 (284)
Q Consensus 278 a~~k 281 (284)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8653
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.4e-28 Score=223.50 Aligned_cols=227 Identities=25% Similarity=0.343 Sum_probs=173.0
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCc----------cCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSV----------EEPRSRARPCELYVCNLPRSFDISELLE 118 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~v~nl~~~~t~~~l~~ 118 (284)
.+.++||+||.|.+.+++..+.. ++|....+.......... .........++|||+|||..+++++|++
T Consensus 127 ~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~ 205 (457)
T TIGR01622 127 SRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQ 205 (457)
T ss_pred CCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHH
Confidence 35678999999999999999985 777766655433211100 0011112368999999999999999999
Q ss_pred hhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccc------------
Q 023297 119 MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA------------ 186 (284)
Q Consensus 119 ~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~------------ 186 (284)
+|++||.|..|.++.+..+|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++..........
T Consensus 206 ~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~ 285 (457)
T TIGR01622 206 IFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQM 285 (457)
T ss_pred HHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccC
Confidence 99999999999999998889999999999999999999999999999999999999965321100000
Q ss_pred -------------------c---c----------------------c-CCC-------------CCCc---cccCCCcEE
Q 023297 187 -------------------E---A----------------------L-ISP-------------PKKI---FVYESPHKL 205 (284)
Q Consensus 187 -------------------~---~----------------------~-~~~-------------~~~~---~~~~~~~~l 205 (284)
. . . ..+ .... ......++|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 365 (457)
T TIGR01622 286 GKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCL 365 (457)
T ss_pred CcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEE
Confidence 0 0 0 000 0000 012355789
Q ss_pred EEcCCCCCCC----------HHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 206 YVGNLSWAVK----------PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 206 ~v~nl~~~~~----------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
+|.||....+ .++|++.|++||.|..|.|... ...|++||+|.++++|.+|+ .|||+.|+|+.|.
T Consensus 366 ~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~ 441 (457)
T TIGR01622 366 VLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMIT 441 (457)
T ss_pred EEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEE
Confidence 9999955433 3789999999999999998633 35789999999999999999 7999999999999
Q ss_pred EEeccC
Q 023297 275 VREGVD 280 (284)
Q Consensus 275 v~~a~~ 280 (284)
+.|...
T Consensus 442 ~~~~~~ 447 (457)
T TIGR01622 442 AAFVVN 447 (457)
T ss_pred EEEEcH
Confidence 998753
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=4.7e-29 Score=227.79 Aligned_cols=192 Identities=24% Similarity=0.382 Sum_probs=154.7
Q ss_pred cchhhhHHHHhhcCC--------CCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEe
Q 023297 62 VDEEAVVVEDEINGK--------DNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133 (284)
Q Consensus 62 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~ 133 (284)
.++++..+..+.++- ...+.+... ++.......++|||+|||.++++++|+++|++||.|.+++|++
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~-----~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~ 92 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPG-----WSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMM 92 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCc-----ccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEE
Confidence 355666666655544 444433322 2233345679999999999999999999999999999999999
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC-CceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCC
Q 023297 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212 (284)
Q Consensus 134 ~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 212 (284)
| .+|+++|||||+|.+.++|++||+.||+..+. |+.|.|.++. ..++|||+|||.
T Consensus 93 D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~-----------------------~~~rLFVgNLP~ 148 (578)
T TIGR01648 93 D-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV-----------------------DNCRLFVGGIPK 148 (578)
T ss_pred C-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc-----------------------cCceeEeecCCc
Confidence 9 78999999999999999999999999999885 7887776652 247899999999
Q ss_pred CCCHHHHHHhhccCCc-eEEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHH-HhCC--CccCCceEEEEeccCCC
Q 023297 213 AVKPEDLRNHFGRFGT-VVSARVL-HDRKGQTTRVFGFISFSSDAERDAAL-SLNG--TDFRGRTIIVREGVDRT 282 (284)
Q Consensus 213 ~~~~~~l~~~f~~~G~-v~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g--~~~~g~~l~v~~a~~k~ 282 (284)
.+++++|.+.|.+++. +.++.+. .....++++|||||+|.++++|..|+ .|++ ..+.|+.|.|.|+.++.
T Consensus 149 ~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 149 NKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred chhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 9999999999999863 4444443 33345788999999999999999999 5643 36789999999998754
No 20
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=1.4e-29 Score=192.08 Aligned_cols=170 Identities=28% Similarity=0.435 Sum_probs=153.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
....+||||||+..++++.|.++|-+.|+|.++++++|..++..+|||||+|.++|+|+.|++.||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEE-EEEeecCCCCCcceEEEEEeCCHH
Q 023297 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS-ARVLHDRKGQTTRVFGFISFSSDA 255 (284)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~ 255 (284)
..... ....+.+|||+||...+++..|.+.|..||.+.. -+|+++..+|.++|+|||-|.+.+
T Consensus 87 s~~~~----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 87 SAHQK----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred ccccc----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 52111 0122367999999999999999999999998555 589999999999999999999999
Q ss_pred HHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 256 ERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 256 ~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
.+.+|+ ++||..+.++++.|.|+..+.
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecC
Confidence 999999 799999999999999987553
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=1.8e-28 Score=227.32 Aligned_cols=178 Identities=19% Similarity=0.336 Sum_probs=143.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccC------------CceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPF------------GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG 163 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~------------G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 163 (284)
....++|||||||+.+|+++|+++|.++ +.|..+.+ ++.+|||||+|.+.++|..|| .|+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 4456899999999999999999999874 23444444 345899999999999999999 6999
Q ss_pred CCCCCceeEEEEcccCCcccccccc--------cCC----CCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEE
Q 023297 164 SDVGGREMRVRFSIDMNSRTRNAEA--------LIS----PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS 231 (284)
Q Consensus 164 ~~~~g~~l~v~~~~~~~~~~~~~~~--------~~~----~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~ 231 (284)
..+.|+.|.|............... ... ...........++|||+|||..+++++|+++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 9999999999876544321100000 000 0001112245689999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccC
Q 023297 232 ARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 232 v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~ 280 (284)
+.++++..+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++..
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 999999889999999999999999999999 6999999999999999864
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=213.84 Aligned_cols=183 Identities=26% Similarity=0.395 Sum_probs=156.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
+.+|||++||++++.++|.++|+.+|+|..+.++.+..++.++|||||+|.-.+++++|++.+++..|+|+.|+|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCcccccccccCC---------CCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEE
Q 023297 179 MNSRTRNAEALIS---------PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249 (284)
Q Consensus 179 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 249 (284)
............. .+.......+...|.|+|||+.+.+.+|+.+|+.||.|..|.|++...++.+ |||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEE
Confidence 5433311110000 0011111223578999999999999999999999999999999987755554 99999
Q ss_pred EeCCHHHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 250 SFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 250 ~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
.|.+..+|..|+ .+||..|+||+|-|.||.+|.
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 999999999999 699999999999999999875
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.1e-28 Score=194.54 Aligned_cols=168 Identities=27% Similarity=0.459 Sum_probs=155.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|.|.-||..||.++|+.+|...|+|++|++++|+.+|.+.|||||.|-++++|++|+..|||..+..+.|+|.++.+
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 258 (284)
.... ....+|||.+||..++..+|.++|.+||.|.--+|+.|..+|.+||.+||.|+...+|.
T Consensus 121 Ss~~-----------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe 183 (360)
T KOG0145|consen 121 SSDS-----------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAE 183 (360)
T ss_pred Chhh-----------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHH
Confidence 4321 23467999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HhCCCccCC--ceEEEEeccCCCC
Q 023297 259 AAL-SLNGTDFRG--RTIIVREGVDRTE 283 (284)
Q Consensus 259 ~a~-~l~g~~~~g--~~l~v~~a~~k~~ 283 (284)
.|+ .|||..=-| -+|.|+|+..+++
T Consensus 184 ~AIk~lNG~~P~g~tepItVKFannPsq 211 (360)
T KOG0145|consen 184 EAIKGLNGQKPSGCTEPITVKFANNPSQ 211 (360)
T ss_pred HHHHhccCCCCCCCCCCeEEEecCCccc
Confidence 999 699997755 5699999987654
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=2e-25 Score=204.34 Aligned_cols=130 Identities=22% Similarity=0.359 Sum_probs=110.2
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCcc---------CCCCCCCCCeEEEcCCCCCCCHHHHHHh
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE---------EPRSRARPCELYVCNLPRSFDISELLEM 119 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 119 (284)
.++++||+||.|.+.+++..+.+.+||....+........... ........++|||+|||+++++++|+++
T Consensus 145 TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~l 224 (612)
T TIGR01645 145 TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSV 224 (612)
T ss_pred CCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHH
Confidence 4578999999999999999999999998776665433211100 0111224579999999999999999999
Q ss_pred hccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 120 f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
|+.||.|.+++|.+++.+|+++|||||+|.+.++|.+|++.||+..++|+.|+|.++..
T Consensus 225 Fs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 225 FEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 99999999999999998999999999999999999999999999999999999998763
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.4e-26 Score=196.87 Aligned_cols=239 Identities=23% Similarity=0.356 Sum_probs=190.3
Q ss_pred ccCCCcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCC--CCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcc
Q 023297 45 SCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDD--DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKP 122 (284)
Q Consensus 45 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 122 (284)
...+...++|++||.+...+++.++...+.......+..... .....+.....++++||||-|++.++|.+++++|.+
T Consensus 68 kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~ 147 (510)
T KOG0144|consen 68 KDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSR 147 (510)
T ss_pred cccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHh
Confidence 334455789999999999999999999998877655543322 222222223355799999999999999999999999
Q ss_pred CCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-CCC--ceeEEEEcccCCccccccc------------
Q 023297 123 FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD-VGG--REMRVRFSIDMNSRTRNAE------------ 187 (284)
Q Consensus 123 ~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g--~~l~v~~~~~~~~~~~~~~------------ 187 (284)
||.|++|+|.+|. .+.+||||||.|.+.+.|..||+.|||.. +.| .+|.|+|+..++.+..+.-
T Consensus 148 fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~ 226 (510)
T KOG0144|consen 148 FGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLG 226 (510)
T ss_pred hCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhc
Confidence 9999999999995 59999999999999999999999999975 444 7899999975544210000
Q ss_pred ------c-------------------------------------------------------------cC----------
Q 023297 188 ------A-------------------------------------------------------------LI---------- 190 (284)
Q Consensus 188 ------~-------------------------------------------------------------~~---------- 190 (284)
. ..
T Consensus 227 ~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~ 306 (510)
T KOG0144|consen 227 NGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFP 306 (510)
T ss_pred CCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCc
Confidence 0 00
Q ss_pred ---CCC--------------------------------------------------------------------------
Q 023297 191 ---SPP-------------------------------------------------------------------------- 193 (284)
Q Consensus 191 ---~~~-------------------------------------------------------------------------- 193 (284)
.++
T Consensus 307 ~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa 386 (510)
T KOG0144|consen 307 GSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQA 386 (510)
T ss_pred cccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHh
Confidence 000
Q ss_pred -----------------------------CCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcc
Q 023297 194 -----------------------------KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244 (284)
Q Consensus 194 -----------------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~ 244 (284)
........+.+|||++||.+.-+.+|-..|..||.|...+++.|+.++-++
T Consensus 387 ~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlsk 466 (510)
T KOG0144|consen 387 MQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSK 466 (510)
T ss_pred hhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhh
Confidence 000000122669999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCCCC
Q 023297 245 VFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTES 284 (284)
Q Consensus 245 g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~~~ 284 (284)
.|+||.|++..+|..|| .|||..+++++++|...+++.++
T Consensus 467 cfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 467 CFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred hcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 99999999999999999 79999999999999999887653
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.7e-26 Score=200.93 Aligned_cols=222 Identities=24% Similarity=0.334 Sum_probs=190.4
Q ss_pred ccccCCcccCCCcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 023297 38 FQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELL 117 (284)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~ 117 (284)
..+..+.... . +.||+|+.+.+.+++..|.+++|.....+.+.....+.... ..|||.||+++++..+|.
T Consensus 25 v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-------~~~~i~nl~~~~~~~~~~ 94 (369)
T KOG0123|consen 25 VLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-------SLVFIKNLDESIDNKSLY 94 (369)
T ss_pred ceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-------ceeeecCCCcccCcHHHH
Confidence 3444444455 3 89999999999999999999999999988887665443332 339999999999999999
Q ss_pred HhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccccccCCCCCCcc
Q 023297 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197 (284)
Q Consensus 118 ~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 197 (284)
++|+.||.|.+|++..+. .| ++|| ||+|.++++|.+|++.+||..+.|++|.|.....+..+......
T Consensus 95 d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~--------- 162 (369)
T KOG0123|consen 95 DTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE--------- 162 (369)
T ss_pred HHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc---------
Confidence 999999999999999984 35 9999 99999999999999999999999999999998766554433322
Q ss_pred ccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEE
Q 023297 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276 (284)
Q Consensus 198 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~ 276 (284)
....-..+++.|++...+++.|.++|..+|.|..+.++.+. .++++||+||.|.++++|..|+ .|||..++|..+.|.
T Consensus 163 ~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~ 241 (369)
T KOG0123|consen 163 YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVG 241 (369)
T ss_pred hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeec
Confidence 11334679999999999999999999999999999999997 5669999999999999999999 699999999999999
Q ss_pred eccCCC
Q 023297 277 EGVDRT 282 (284)
Q Consensus 277 ~a~~k~ 282 (284)
.+..+.
T Consensus 242 ~aqkk~ 247 (369)
T KOG0123|consen 242 RAQKKS 247 (369)
T ss_pred ccccch
Confidence 887654
No 27
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=4.9e-27 Score=195.81 Aligned_cols=177 Identities=22% Similarity=0.425 Sum_probs=155.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
-|+||||.|.+.+.|+.|+..|..||+|.+|.+.+|+.|++++|||||+|+-+|.|.-|++.|||..++||.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999986643
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 258 (284)
.......... .......-++|||..+..+.+++||+..|+-||.|..|.+-++...+..+||+|++|.+..+-.
T Consensus 193 mpQAQpiID~------vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 193 MPQAQPIIDM------VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred CcccchHHHH------HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 3322211110 0011123478999999999999999999999999999999999988899999999999999999
Q ss_pred HHH-HhCCCccCCceEEEEeccCC
Q 023297 259 AAL-SLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 259 ~a~-~l~g~~~~g~~l~v~~a~~k 281 (284)
.|+ .||-..++|..|+|..+.-+
T Consensus 267 eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 267 EAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred HHhhhcchhhcccceEecccccCC
Confidence 999 69999999999999887644
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=182.52 Aligned_cols=147 Identities=29% Similarity=0.577 Sum_probs=136.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
.+|||||||..+++.+|+.+|++||+|.+|.|+++ ||||..++...|+.||..|+|+.++|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 8999999999999999999999999999999998754
Q ss_pred CcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 023297 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259 (284)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 259 (284)
. ....+|+|+|+.+.++.++|+..|++||.|..+.|.+| |+||.|+..++|..
T Consensus 75 s-------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~ 127 (346)
T KOG0109|consen 75 S-------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVE 127 (346)
T ss_pred C-------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHH
Confidence 1 23467999999999999999999999999999999876 79999999999999
Q ss_pred HH-HhCCCccCCceEEEEeccCC
Q 023297 260 AL-SLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 260 a~-~l~g~~~~g~~l~v~~a~~k 281 (284)
|+ .|||++|.|++++|+...++
T Consensus 128 air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 128 AIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred HHhcccccccccceeeeeeeccc
Confidence 99 79999999999999988765
No 29
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=8e-25 Score=191.68 Aligned_cols=228 Identities=28% Similarity=0.395 Sum_probs=186.8
Q ss_pred CcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCC------CCCCCCeEEEcCCCCCCCHHHHHHhhccCCc
Q 023297 52 PAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR------SRARPCELYVCNLPRSFDISELLEMFKPFGT 125 (284)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 125 (284)
++|| ||.+.+++++..+++.+||....+.............+ ....-..+||.|++.+++++.|.++|..+|.
T Consensus 115 ~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~ 193 (369)
T KOG0123|consen 115 SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS 193 (369)
T ss_pred ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc
Confidence 7899 99999999999999999999887776544211111111 2234578999999999999999999999999
Q ss_pred eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccccccC-CCCCCccccCCCcE
Q 023297 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI-SPPKKIFVYESPHK 204 (284)
Q Consensus 126 i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 204 (284)
|.++.++.+. .|+++||+||.|.+.++|..|++.|++..+.+..+.|..+..+........... .............+
T Consensus 194 i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~n 272 (369)
T KOG0123|consen 194 ITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGAN 272 (369)
T ss_pred ceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccc
Confidence 9999999984 577999999999999999999999999999999999999876333222111100 01111122244578
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 205 l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
|||.|++..++.+.|+++|..+|.|..++|+.+. .|+++||+||+|.+.++|..|+ .+||..+.|+.+.|.++..+.
T Consensus 273 l~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~ 350 (369)
T KOG0123|consen 273 LYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKE 350 (369)
T ss_pred cccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhc
Confidence 9999999999999999999999999999999986 7899999999999999999999 799999999999999887554
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=6e-25 Score=197.38 Aligned_cols=176 Identities=27% Similarity=0.440 Sum_probs=149.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET---GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
..++|||.||+++++.++|...|...|.|.++.|...++. -.+.|||||+|.+.++|..|++.|+|+.++|+.|.|.
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3445999999999999999999999999999998765432 1355999999999999999999999999999999999
Q ss_pred EcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCH
Q 023297 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254 (284)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 254 (284)
++..+...... .+.......+.|.|+|+|+..+..+++++|..||.+..|+|+.....+..+|||||+|-++
T Consensus 594 ~S~~k~~~~~g--------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~ 665 (725)
T KOG0110|consen 594 ISENKPASTVG--------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTP 665 (725)
T ss_pred eccCccccccc--------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCc
Confidence 99732222211 1111112357899999999999999999999999999999998866677899999999999
Q ss_pred HHHHHHH-HhCCCccCCceEEEEeccCC
Q 023297 255 AERDAAL-SLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 255 ~~A~~a~-~l~g~~~~g~~l~v~~a~~k 281 (284)
.+|.+|+ +|.+..+.||+|.+.||...
T Consensus 666 ~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 666 REAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHHHHHHhhcccceechhhheehhccc
Confidence 9999999 79999999999999999764
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.2e-24 Score=174.60 Aligned_cols=186 Identities=27% Similarity=0.426 Sum_probs=156.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC---CceeEEE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG---GREMRVR 174 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~v~ 174 (284)
+.++||||-|.+.-.|+|++.+|..||.|++|.+.+.++ |.++|+|||.|.+..+|..||..|+|..-. ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 458999999999999999999999999999999998854 999999999999999999999999997642 4779999
Q ss_pred EcccCCccccccc-------------------------------------------------------------------
Q 023297 175 FSIDMNSRTRNAE------------------------------------------------------------------- 187 (284)
Q Consensus 175 ~~~~~~~~~~~~~------------------------------------------------------------------- 187 (284)
++...+++.....
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 9863333110000
Q ss_pred -------ccCC---------------------------------------------------------------------
Q 023297 188 -------ALIS--------------------------------------------------------------------- 191 (284)
Q Consensus 188 -------~~~~--------------------------------------------------------------------- 191 (284)
....
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0000
Q ss_pred ------------------CCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCC
Q 023297 192 ------------------PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253 (284)
Q Consensus 192 ------------------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~ 253 (284)
-+........+|+|||..||....+.+|.+.|-+||.|...+++.|+-++.+|.|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 00000111355999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhCCCccCCceEEEEeccCCCCC
Q 023297 254 DAERDAAL-SLNGTDFRGRTIIVREGVDRTES 284 (284)
Q Consensus 254 ~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~~~ 284 (284)
+.+|+.|| +|||..|+-++|+|...++|+++
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 99999999 79999999999999999999864
No 32
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.91 E-value=2.1e-24 Score=182.79 Aligned_cols=174 Identities=25% Similarity=0.462 Sum_probs=157.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
+.++|||++|+.+++++.|++.|.+||+|.++.+++|+.+++++||+||+|.+.+.+.+++ ...-+.++|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 5689999999999999999999999999999999999999999999999999999999998 667788999999999987
Q ss_pred cCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 023297 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257 (284)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A 257 (284)
+.......... ....+|||++||.++++++++++|++||.|..+.++.|..+.+++||+||.|.+.+..
T Consensus 84 ~r~~~~~~~~~-----------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sV 152 (311)
T KOG4205|consen 84 SREDQTKVGRH-----------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSV 152 (311)
T ss_pred Ccccccccccc-----------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccc
Confidence 65443222111 1457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCccCCceEEEEeccCCCC
Q 023297 258 DAALSLNGTDFRGRTIIVREGVDRTE 283 (284)
Q Consensus 258 ~~a~~l~g~~~~g~~l~v~~a~~k~~ 283 (284)
.+++...-..|.|+.+.|..|.+|..
T Consensus 153 dkv~~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 153 DKVTLQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred ceecccceeeecCceeeEeeccchhh
Confidence 99999999999999999999999864
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.90 E-value=2.2e-24 Score=188.96 Aligned_cols=184 Identities=28% Similarity=0.422 Sum_probs=157.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
.++.+.++||+-.|....+..+|.++|+..|.|.+|.++.|..+++++|.|||+|.+.+.+-.|| .|.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 34456689999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEcccCCcccccccccCCCCCC-ccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeC
Q 023297 174 RFSIDMNSRTRNAEALISPPKK-IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252 (284)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 252 (284)
......+...... .+... .....+...|||+||.+.+++++|+.+|++||.|+.|.+.+|.++|+++||+||+|.
T Consensus 253 q~sEaeknr~a~~----s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 253 QLSEAEKNRAANA----SPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred cccHHHHHHHHhc----cccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 9876443331111 11111 111122334999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 253 SDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 253 ~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
+.+.|.+|+ +|||.++.|+.|+|.....+.
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred cHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 999999999 799999999999998766543
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.3e-23 Score=166.01 Aligned_cols=139 Identities=26% Similarity=0.466 Sum_probs=119.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
++.++|||+||...+||+-|..||.+.|.|.+++|+.+ .|+|.|+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~wa 48 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNWA 48 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhccccc
Confidence 34589999999999999999999999999999999886 4556666
Q ss_pred ccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHH
Q 023297 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (284)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 256 (284)
........ ......-.+||+.|...++-++|++.|.+||+|.+++|++|..++++|||+||.|-+.++
T Consensus 49 ~~p~nQsk------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~d 116 (321)
T KOG0148|consen 49 TAPGNQSK------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKED 116 (321)
T ss_pred cCcccCCC------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHH
Confidence 43211000 001123569999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 257 RDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 257 A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
|.+|| .|||..|++|.|+..||.-|.
T Consensus 117 AEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 117 AENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHHHhCCeeeccceeeccccccCc
Confidence 99999 799999999999999998764
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.88 E-value=1.3e-21 Score=171.67 Aligned_cols=224 Identities=22% Similarity=0.307 Sum_probs=163.0
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCC-----------C-CCCCCeEEEcCCCCCCCHHHH
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-----------S-RARPCELYVCNLPRSFDISEL 116 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~l~v~nl~~~~t~~~l 116 (284)
..+++|.+|+.+.+.+ .....-.+.|+...+.+.....++.+... . ..+-..||||||++++++++|
T Consensus 217 s~rskgi~Yvef~D~~-sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~l 295 (549)
T KOG0147|consen 217 SRRSKGIAYVEFCDEQ-SVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDML 295 (549)
T ss_pred chhhcceeEEEEeccc-chhhHhhhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHH
Confidence 4457899998887544 44444488999988887665433222221 0 112233999999999999999
Q ss_pred HHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCccccc------cc---
Q 023297 117 LEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN------AE--- 187 (284)
Q Consensus 117 ~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~------~~--- 187 (284)
+.+|+.||.|..|.+.+|..||.++|||||+|.+.++|.+|++.|||..+.|+.|+|..-......... ..
T Consensus 296 r~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d 375 (549)
T KOG0147|consen 296 RGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDD 375 (549)
T ss_pred hhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhh
Confidence 999999999999999999889999999999999999999999999999999999999764322111000 00
Q ss_pred --------------------c-----------------------cCC---CCCCcccc-------CCCcEEEEcCCCC--
Q 023297 188 --------------------A-----------------------LIS---PPKKIFVY-------ESPHKLYVGNLSW-- 212 (284)
Q Consensus 188 --------------------~-----------------------~~~---~~~~~~~~-------~~~~~l~v~nl~~-- 212 (284)
. ... ........ .+..++.+.|+=.
T Consensus 376 ~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdps 455 (549)
T KOG0147|consen 376 RQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPS 455 (549)
T ss_pred ccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcc
Confidence 0 000 00000000 2334556666521
Q ss_pred C-----C---CHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 213 A-----V---KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 213 ~-----~---~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
. | ..+++.+.|.+||.|.+|.|-++ +-|+.||.|.+.+.|..|+ +|||++|.|+.|..+|-
T Consensus 456 tete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 456 TETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred cccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 1 1 25789999999999988887544 3478999999999999999 79999999999999884
No 36
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=5.9e-21 Score=159.64 Aligned_cols=229 Identities=21% Similarity=0.372 Sum_probs=173.6
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCC---------CCCCCCCeEEEcCCCCCCCHHHHHHh
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEP---------RSRARPCELYVCNLPRSFDISELLEM 119 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~v~nl~~~~t~~~l~~~ 119 (284)
..+.+||+||.+..+|.+..+.+.+||...+|++........-.. .+...-++|||..++++.+++||+..
T Consensus 151 T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSV 230 (544)
T KOG0124|consen 151 TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSV 230 (544)
T ss_pred cccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHH
Confidence 467899999999999999999999999999888765432111110 11224588999999999999999999
Q ss_pred hccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCccccc--------------
Q 023297 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN-------------- 185 (284)
Q Consensus 120 f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~-------------- 185 (284)
|+.||+|.+|.+-+++..+.++||||++|.+..+...|+..||-+.++|+.|+|-.+......-..
T Consensus 231 FEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVA 310 (544)
T KOG0124|consen 231 FEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVA 310 (544)
T ss_pred HHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHH
Confidence 999999999999999988999999999999999999999999999999999999776422110000
Q ss_pred ----------------------------------c--------c------c-------cCCCC-----------------
Q 023297 186 ----------------------------------A--------E------A-------LISPP----------------- 193 (284)
Q Consensus 186 ----------------------------------~--------~------~-------~~~~~----------------- 193 (284)
. . . ....+
T Consensus 311 aAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA 390 (544)
T KOG0124|consen 311 AAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILA 390 (544)
T ss_pred HHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhc
Confidence 0 0 0 00000
Q ss_pred -----------------------------------------------CCccccCCCcEEEEcCC--CCCCC---HHHHHH
Q 023297 194 -----------------------------------------------KKIFVYESPHKLYVGNL--SWAVK---PEDLRN 221 (284)
Q Consensus 194 -----------------------------------------------~~~~~~~~~~~l~v~nl--~~~~~---~~~l~~ 221 (284)
.+..+....+.|.++|+ |.+++ +.+|++
T Consensus 391 ~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~E 470 (544)
T KOG0124|consen 391 SPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITE 470 (544)
T ss_pred CCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHH
Confidence 00000023366788887 45554 578999
Q ss_pred hhccCCceEEEEEeecCCCCCcc----eEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 222 HFGRFGTVVSARVLHDRKGQTTR----VFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 222 ~f~~~G~v~~v~i~~~~~~~~~~----g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
.|.+||.|.+|.|...+.++... ---||+|....++.+|. +|||+.|+|+++....
T Consensus 471 ECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~ 531 (544)
T KOG0124|consen 471 ECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEV 531 (544)
T ss_pred HHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhh
Confidence 99999999999988776544221 12599999999999999 7999999999987654
No 37
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.83 E-value=5.6e-19 Score=139.71 Aligned_cols=172 Identities=24% Similarity=0.360 Sum_probs=140.8
Q ss_pred CeEEEcCCCCCCCHHHHHH----hhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 100 CELYVCNLPRSFDISELLE----MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~----~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
.+|||.||+..+..++|+. +|++||.|.+|.... +.+.+|-|||.|.+.+.|-.|+..|+|..+.|+.+++.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4999999999999999887 999999999988765 467899999999999999999999999999999999999
Q ss_pred cccCCccccccc-------------------cc-------------CCCCCC-ccccCCCcEEEEcCCCCCCCHHHHHHh
Q 023297 176 SIDMNSRTRNAE-------------------AL-------------ISPPKK-IFVYESPHKLYVGNLSWAVKPEDLRNH 222 (284)
Q Consensus 176 ~~~~~~~~~~~~-------------------~~-------------~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~l~~~ 222 (284)
+..+...-.... .. ..++.. .....+...+++.|+|..++.+.+..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 974332111000 00 000000 122456788999999999999999999
Q ss_pred hccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccC-CceEEEEecc
Q 023297 223 FGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR-GRTIIVREGV 279 (284)
Q Consensus 223 f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~-g~~l~v~~a~ 279 (284)
|.+|...+.++++... .|.|||+|.+...|..|. .+.|..+. ...|+|.++.
T Consensus 167 f~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999998765 347999999999999999 69999886 8999999875
No 38
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.1e-18 Score=133.14 Aligned_cols=169 Identities=23% Similarity=0.358 Sum_probs=133.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||.++.+.+|+++|-+||.|..|.+...+ ..-+||||+|++..+|+.||..-+|+.++|..|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 34899999999999999999999999999999986542 246799999999999999999999999999999999997
Q ss_pred cCCcccccccccCC---------CCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEE
Q 023297 178 DMNSRTRNAEALIS---------PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248 (284)
Q Consensus 178 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~af 248 (284)
.............. .............+.|.+||...++++|++++.+.|.|-...+.+|- ++.
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~Gv 154 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VGV 154 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------cee
Confidence 65432211110000 00011112344679999999999999999999999999999998874 589
Q ss_pred EEeCCHHHHHHHH-HhCCCcc--CCceEEEE
Q 023297 249 ISFSSDAERDAAL-SLNGTDF--RGRTIIVR 276 (284)
Q Consensus 249 V~f~~~~~A~~a~-~l~g~~~--~g~~l~v~ 276 (284)
|+|...++..-|+ .|+...+ .|-+..+.
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred eeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 9999999999999 7877765 45444443
No 39
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.82 E-value=2.7e-19 Score=156.11 Aligned_cols=130 Identities=21% Similarity=0.303 Sum_probs=110.0
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 128 (284)
..+++||+||+|.+.+++..+...+++....+.......... .......++|||+|||..+++++|+++|++||.|..
T Consensus 145 tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p--~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~ 222 (346)
T TIGR01659 145 TGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP--GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQ 222 (346)
T ss_pred CCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc--cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEE
Confidence 345789999999999999999999999887766554432111 112234578999999999999999999999999999
Q ss_pred EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC--ceeEEEEcccCC
Q 023297 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFSIDMN 180 (284)
Q Consensus 129 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~ 180 (284)
++|+++..+++++|||||+|.+.++|++||+.||+..+.| +.|+|.++....
T Consensus 223 v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 223 KNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 9999998899999999999999999999999999999865 689999887543
No 40
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.81 E-value=1.3e-18 Score=148.72 Aligned_cols=179 Identities=26% Similarity=0.428 Sum_probs=142.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhc-cCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFK-PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
..+.+||.|||+++.+++|+++|. +.|+|+.|.+..| ..|+++|+|.|+|+++|.+++|++.||.+.+.||.|.|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 346799999999999999999995 6899999999999 67999999999999999999999999999999999999754
Q ss_pred ccCCccc-----------------------------------------cccc---------------------------c
Q 023297 177 IDMNSRT-----------------------------------------RNAE---------------------------A 188 (284)
Q Consensus 177 ~~~~~~~-----------------------------------------~~~~---------------------------~ 188 (284)
.+....+ +... .
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 3211000 0000 0
Q ss_pred cCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-hCCCc
Q 023297 189 LISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTD 267 (284)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~-l~g~~ 267 (284)
....+.......-..++||.||.+.+....|++.|...|.|+.|.+-.|+ .|.++|+|.++|.++-+|.+|++ +++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 00000111112234678999999999999999999999999999999998 56899999999999999999995 78777
Q ss_pred cCCceEEEEec
Q 023297 268 FRGRTIIVREG 278 (284)
Q Consensus 268 ~~g~~l~v~~a 278 (284)
+..++..+...
T Consensus 281 ~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 281 LFDRRMTVRLD 291 (608)
T ss_pred Cccccceeecc
Confidence 77777776653
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=5.1e-19 Score=135.73 Aligned_cols=85 Identities=32% Similarity=0.504 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||+++++++|+++|++||.|.++.++.+..+++++|||||+|.+.++|++|++.|++..++|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 023297 177 IDMNS 181 (284)
Q Consensus 177 ~~~~~ 181 (284)
..+..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 75443
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=1.8e-18 Score=132.68 Aligned_cols=83 Identities=37% Similarity=0.734 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||+.+++++|+++|++||.|.++.|+.+..+++++|||||+|.+.++|..|+ .|||..|.|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 34578999999999999999999999999999999999999999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
.++.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 8765
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=3e-17 Score=136.75 Aligned_cols=182 Identities=21% Similarity=0.282 Sum_probs=140.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceE--------EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVL--------SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (284)
......|||.|||.++|.+++.++|++||.|. .|++.++. .|..+|=|.|.|-..+++.-|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 33456799999999999999999999999875 37888884 4999999999999999999999999999999
Q ss_pred CceeEEEEcccCCcccccccc-------------------cCCCC--CCccccCCCcEEEEcCCCC----CCC-------
Q 023297 168 GREMRVRFSIDMNSRTRNAEA-------------------LISPP--KKIFVYESPHKLYVGNLSW----AVK------- 215 (284)
Q Consensus 168 g~~l~v~~~~~~~~~~~~~~~-------------------~~~~~--~~~~~~~~~~~l~v~nl~~----~~~------- 215 (284)
|+.|+|+.|.-.......... ....+ .........++|.+.|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 999999988622111100000 00011 1223334568899999721 222
Q ss_pred HHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 216 ~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
+++|++-+++||.|.+|.|.-. .+.|.+-|.|.+.++|..|+ .|+|+.|+||.|.......++
T Consensus 290 kedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 5778888999999999988633 35778999999999999999 699999999999887665543
No 44
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=1.6e-17 Score=144.38 Aligned_cols=171 Identities=19% Similarity=0.235 Sum_probs=135.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
....|-+++||+++|++||.++|+.+ .|+++.+.+ .+|+..|-|||+|.+++++++|+ ..+...+..|-|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccC
Confidence 34678999999999999999999999 577866655 47999999999999999999999 678888889999997765
Q ss_pred cCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 023297 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257 (284)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A 257 (284)
.......- .+...........|.+++||+.++++||.++|+..-.|....++.....+++.|.|||.|++.+.|
T Consensus 85 ~~e~d~~~------~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 85 GAEADWVM------RPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESA 158 (510)
T ss_pred Cccccccc------cCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHH
Confidence 43321111 111111113457799999999999999999999875566634344444788999999999999999
Q ss_pred HHHHHhCCCccCCceEEEEec
Q 023297 258 DAALSLNGTDFRGRTIIVREG 278 (284)
Q Consensus 258 ~~a~~l~g~~~~g~~l~v~~a 278 (284)
++|+.-|...|+-+-|.|-.+
T Consensus 159 e~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 159 EIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHHHHHHHhhccceEEeehh
Confidence 999988888899998888654
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=124.14 Aligned_cols=167 Identities=17% Similarity=0.272 Sum_probs=122.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeC-CCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC---CceeEE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN-PETGISRGCGYLTMGSINSAKNAIIALDGSDVG---GREMRV 173 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~v 173 (284)
.-++|||.+||.++...+|..+|..|---+...+... +.....+-+||++|.+...|..|+..|||..|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3489999999999999999999999876666666443 222345679999999999999999999999996 899999
Q ss_pred EEcccCCccccccccc------------------------------------------------------------CCCC
Q 023297 174 RFSIDMNSRTRNAEAL------------------------------------------------------------ISPP 193 (284)
Q Consensus 174 ~~~~~~~~~~~~~~~~------------------------------------------------------------~~~~ 193 (284)
++++......+..... +.+.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9986222111100000 0000
Q ss_pred CCc---------cccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-Hh
Q 023297 194 KKI---------FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263 (284)
Q Consensus 194 ~~~---------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l 263 (284)
... .....+.+|||-||...++|++|+.+|..|-....++|... .| ...||++|++.+.|..|+ .|
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHh
Confidence 000 00013367999999999999999999999977666666432 22 347999999999999999 69
Q ss_pred CCCcc
Q 023297 264 NGTDF 268 (284)
Q Consensus 264 ~g~~~ 268 (284)
.|..+
T Consensus 269 qg~~~ 273 (284)
T KOG1457|consen 269 QGNLL 273 (284)
T ss_pred hccee
Confidence 98876
No 46
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.1e-17 Score=132.13 Aligned_cols=162 Identities=25% Similarity=0.415 Sum_probs=130.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
..||||+||+.+.+.+|+.+|..||.+.++.+.. ||+||+|.+..+|..|+..||+..+.|-.+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999888753 68999999999999999999999999988999998743
Q ss_pred Ccccccccc--cC-CCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHH
Q 023297 180 NSRTRNAEA--LI-SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (284)
Q Consensus 180 ~~~~~~~~~--~~-~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 256 (284)
.-....... .. ............+.+.+.|+...+.+++|.+.|.++|.+....+. .+++||+|...++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhh
Confidence 222200000 00 011112223456889999999999999999999999998555442 3369999999999
Q ss_pred HHHHH-HhCCCccCCceEEEEe
Q 023297 257 RDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 257 A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
|..|+ .|+|..+.|+.|.+..
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhhcchhccchhhcCceeeecc
Confidence 99999 6999999999999843
No 47
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=5.2e-17 Score=144.48 Aligned_cols=185 Identities=20% Similarity=0.293 Sum_probs=143.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....+.+||++||...++.++++++..||++....++.+..+|.++||||++|.+......|+..|||..+++..|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcccccccc------cCCCC-CCccccCCCcEEEEcCCCC--C--------CCHHHHHHhhccCCceEEEEEeecC
Q 023297 176 SIDMNSRTRNAEA------LISPP-KKIFVYESPHKLYVGNLSW--A--------VKPEDLRNHFGRFGTVVSARVLHDR 238 (284)
Q Consensus 176 ~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~l~v~nl~~--~--------~~~~~l~~~f~~~G~v~~v~i~~~~ 238 (284)
+............ ..... .......+...|.+.|+-. + -..++++.-|.+||.|..|.|.++.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 8644332211111 00000 0111223334455555411 1 1236678888899999999999882
Q ss_pred CC---CCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccC
Q 023297 239 KG---QTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 239 ~~---~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~ 280 (284)
.. .-..|-.||+|.+.++++.|+ +|+|++|.|++|...|...
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 22 234566799999999999999 7999999999999998753
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=4.5e-17 Score=109.67 Aligned_cols=70 Identities=37% Similarity=0.682 Sum_probs=67.2
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 102 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|++|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6789999999999999999999999999999999885
No 49
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.70 E-value=2.6e-16 Score=134.04 Aligned_cols=163 Identities=30% Similarity=0.447 Sum_probs=126.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||..+++++|.++|.+||.|..+.+..++.+|.++|||||+|.++++|..|++.++|..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988899999999999999999999999999999999999999653
Q ss_pred -CCcccccc------cccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEe
Q 023297 179 -MNSRTRNA------EALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251 (284)
Q Consensus 179 -~~~~~~~~------~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f 251 (284)
........ ..................+++.+++..+...++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 11111111 00111222233345668899999999999999999999999997777766554444444444444
Q ss_pred CCHHHHHHHH
Q 023297 252 SSDAERDAAL 261 (284)
Q Consensus 252 ~~~~~A~~a~ 261 (284)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 4454444444
No 50
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.4e-17 Score=128.23 Aligned_cols=86 Identities=33% Similarity=0.536 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
+..++.++|-|.||+.++++++|+++|..||.|..+.|.+|+.||.++|||||.|.+.++|.+||+.|||+-++.-.|+|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 023297 174 RFSIDM 179 (284)
Q Consensus 174 ~~~~~~ 179 (284)
+|+.+.
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999764
No 51
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.70 E-value=2.2e-16 Score=142.67 Aligned_cols=181 Identities=23% Similarity=0.300 Sum_probs=138.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....+.|+|+|||..+..++|...|..||+|..+.+++. | --++|.|.+..+|.+|++.|....+...++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 3445578999999999999999999999999999855422 1 128999999999999999999999999999888
Q ss_pred EcccCCcc-----c-------cc----ccccCCCCC-----------------CccccCCCcEEEEcCCCCCCCHHHHHH
Q 023297 175 FSIDMNSR-----T-------RN----AEALISPPK-----------------KIFVYESPHKLYVGNLSWAVKPEDLRN 221 (284)
Q Consensus 175 ~~~~~~~~-----~-------~~----~~~~~~~~~-----------------~~~~~~~~~~l~v~nl~~~~~~~~l~~ 221 (284)
|+....-. . .. ......... ........++|||.||++.++.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 87421111 0 00 000000000 001112334499999999999999999
Q ss_pred hhccCCceEEEEEeecCCC---CCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCC
Q 023297 222 HFGRFGTVVSARVLHDRKG---QTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 222 ~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k 281 (284)
.|...|.|..+.|...+.. -.+.|||||+|.+.++|+.|+ .|+|..+.|+.|.|+++..+
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k 598 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENK 598 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCc
Confidence 9999999999988766532 135699999999999999999 79999999999999998743
No 52
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.8e-16 Score=113.99 Aligned_cols=82 Identities=18% Similarity=0.366 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
.+++||||||++.++|++|.++|+++|+|..|-+-.|+.+..+.|||||+|.+.++|+.|++.++|..++.+.|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999975
Q ss_pred cC
Q 023297 178 DM 179 (284)
Q Consensus 178 ~~ 179 (284)
..
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 43
No 53
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.66 E-value=3.5e-16 Score=119.44 Aligned_cols=133 Identities=20% Similarity=0.355 Sum_probs=116.7
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceE-
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVL- 127 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~- 127 (284)
.....||+|+.+..+|++..+..-+|.-+..+.+....... ......+.+.+|||+||.+.+++..|.+.|+.||.+.
T Consensus 47 ~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas-~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~ 125 (203)
T KOG0131|consen 47 TQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS-AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLIS 125 (203)
T ss_pred cccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc-cccccccccccccccccCcchhHHHHHHHHHhcccccc
Confidence 44578999999999999999999999888888876654433 4555666779999999999999999999999999865
Q ss_pred EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcc
Q 023297 128 SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182 (284)
Q Consensus 128 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 182 (284)
.-++++++.||.++|||||.|.+.+.+.+|++.++|..+..+++.|.++..+...
T Consensus 126 ~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 126 PPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred CCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 4688999999999999999999999999999999999999999999999765543
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=7.8e-16 Score=103.55 Aligned_cols=69 Identities=38% Similarity=0.727 Sum_probs=65.9
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 205 l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
|||+|||..+++++|+++|++||.|..+.+..+ ..+..+|+|||+|.+.++|.+|+ .|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 58899999999999999999999 5999999999985
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=1.1e-15 Score=102.96 Aligned_cols=70 Identities=36% Similarity=0.659 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 102 l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
|||+|||+++++++|+++|+.||.|..+.+..++. |.++|+|||+|.++++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 99999999999999999999999999999999874
No 56
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=5.1e-16 Score=123.33 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
-++||||||++.+..++|+++|++||+|++..++.|+.+|+++|||||+|.+.++|.+|++ =..-.|+||+..|+++.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 4789999999999999999999999999999999999999999999999999999999995 345678999999998864
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.4e-15 Score=121.39 Aligned_cols=82 Identities=23% Similarity=0.395 Sum_probs=78.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
..++|.|.||+.++++++|+++|.+||.|.+|.|.+|+++|.++|||||.|.+.++|.+|+ .|||.-+..=.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 5578999999999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred CCC
Q 023297 280 DRT 282 (284)
Q Consensus 280 ~k~ 282 (284)
|+.
T Consensus 268 P~~ 270 (270)
T KOG0122|consen 268 PSN 270 (270)
T ss_pred CCC
Confidence 874
No 58
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1e-15 Score=126.82 Aligned_cols=84 Identities=36% Similarity=0.512 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
......++|+|.|||+...+.||+.+|.+||+|.+|.|+.+.+ .+||||||+|++.++|++|.+.|||..+.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 3445668999999999999999999999999999999999743 38999999999999999999999999999999999
Q ss_pred EEcccC
Q 023297 174 RFSIDM 179 (284)
Q Consensus 174 ~~~~~~ 179 (284)
..+...
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 998754
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=2.8e-15 Score=123.09 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.+.. .+|||||+|.++++|+.|+ .|+|..+.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998753 5799999999999999999 6999999999999999875
Q ss_pred CC
Q 023297 179 MN 180 (284)
Q Consensus 179 ~~ 180 (284)
..
T Consensus 80 ~~ 81 (260)
T PLN03120 80 YQ 81 (260)
T ss_pred CC
Confidence 53
No 60
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.62 E-value=2.7e-14 Score=121.64 Aligned_cols=173 Identities=23% Similarity=0.289 Sum_probs=134.3
Q ss_pred CCeEEEcCCCCC-CCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 99 PCELYVCNLPRS-FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 99 ~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
...|.|.||... +|.+-|..+|.-||+|.+|+|..++. --|.|+|.+...|.-|++.|+|..+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 477899999886 89999999999999999999998743 369999999999999999999999999999999986
Q ss_pred cCCccc-----cccc---c-------cCC-CCCC--ccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCC
Q 023297 178 DMNSRT-----RNAE---A-------LIS-PPKK--IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239 (284)
Q Consensus 178 ~~~~~~-----~~~~---~-------~~~-~~~~--~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~ 239 (284)
-..-.- +... . ... +..+ .....+..+|.+.|+|..++||+|++.|..-|...+...+..
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-- 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-- 449 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--
Confidence 322111 1100 0 000 0000 112245678999999999999999999998887655544432
Q ss_pred CCCcceEEEEEeCCHHHHHHHH-HhCCCccCCc-eEEEEeccC
Q 023297 240 GQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR-TIIVREGVD 280 (284)
Q Consensus 240 ~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~-~l~v~~a~~ 280 (284)
+.+.+|++.+.+.++|..|+ .+|+..+++. -++|+|.+.
T Consensus 450 --kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 450 --KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred --CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 23448999999999999999 7999998665 899999875
No 61
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.5e-15 Score=125.85 Aligned_cols=80 Identities=31% Similarity=0.632 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|+|.|+|+...+-||+.+|++||.|.+|.|+.+ ...+||||||+|++.++|.+|. +|||..+.||+|.|+-|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 45688999999999999999999999999999999987 3458999999999999999999 79999999999999988
Q ss_pred cCC
Q 023297 279 VDR 281 (284)
Q Consensus 279 ~~k 281 (284)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 754
No 62
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=4.1e-15 Score=121.82 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=80.5
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcee
Q 023297 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (284)
Q Consensus 92 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (284)
.....++-+||||+-|+++++|..|+..|+.||+|+.|.|+.|+.||+++|||||+|+++.+...|++..+|..|+|+.|
T Consensus 94 p~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 94 PNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred CcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 33445677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcc
Q 023297 172 RVRFSI 177 (284)
Q Consensus 172 ~v~~~~ 177 (284)
.|.+-.
T Consensus 174 ~VDvER 179 (335)
T KOG0113|consen 174 LVDVER 179 (335)
T ss_pred EEEecc
Confidence 998864
No 63
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.8e-15 Score=113.82 Aligned_cols=78 Identities=32% Similarity=0.491 Sum_probs=72.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++||||||+..+++.||+..|..||++.+|+|-.++ -|||||+|++..+|+.|+..|+|..|.|..|+|+++..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4899999999999999999999999999999998864 68999999999999999999999999999999999975
Q ss_pred CCc
Q 023297 179 MNS 181 (284)
Q Consensus 179 ~~~ 181 (284)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 443
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=5.7e-15 Score=121.29 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=71.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
.++|||+||++.+++++|+++|+.||.|.+|.|+++.. ++|||||+|.+.++|..|+.|||..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 47899999999999999999999999999999998863 57899999999999999999999999999999999873
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.2e-15 Score=119.74 Aligned_cols=79 Identities=27% Similarity=0.495 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
.-++|||++|+|.+..+.|+++|++||+|.+..|+.|+.+|++||||||+|.|.++|.+|.+--+-.|+||+..++.|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 3478999999999999999999999999999999999999999999999999999999999877788999998888764
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=7.9e-15 Score=98.78 Aligned_cols=69 Identities=39% Similarity=0.726 Sum_probs=63.4
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 205 l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
|||+|||+.+++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|.+|+ .++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 899999999999999999999 5788999999885
No 67
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=2.2e-15 Score=117.22 Aligned_cols=83 Identities=29% Similarity=0.506 Sum_probs=78.3
Q ss_pred cccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEE
Q 023297 197 FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275 (284)
Q Consensus 197 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v 275 (284)
.+.+....|-|.||.+.++-++|+.+|++||.|-+|.|++|..++.++|||||.|.+..+|+.|+ +|+|.+++|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34456788999999999999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred Eecc
Q 023297 276 REGV 279 (284)
Q Consensus 276 ~~a~ 279 (284)
++|+
T Consensus 88 q~ar 91 (256)
T KOG4207|consen 88 QMAR 91 (256)
T ss_pred hhhh
Confidence 9876
No 68
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.7e-14 Score=116.60 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
.+++|||+||++.+|+++|+++|+.||+|.+|+|+++ +..+|||||+|+++++|+.|+ .|+|..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4589999999999999999999999999999999988 445689999999999999999 899999999999999876
Q ss_pred cCC
Q 023297 178 DMN 180 (284)
Q Consensus 178 ~~~ 180 (284)
.+.
T Consensus 80 ~y~ 82 (243)
T PLN03121 80 QYE 82 (243)
T ss_pred ccc
Confidence 543
No 69
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=4.2e-15 Score=115.73 Aligned_cols=80 Identities=30% Similarity=0.424 Sum_probs=77.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
-..|.|-||.+.++.++|+.+|++||.|-+|.|.+|..|+.++|||||.|.+..+|+.|++.|+|..++|+.|+|+++.-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999998863
No 70
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.3e-14 Score=105.44 Aligned_cols=87 Identities=16% Similarity=0.356 Sum_probs=81.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
..-++..|||.+++..+++++|.+.|..||+|.++++-.|..||-.+|||+|+|.+.++|++|+..+||..+.|+.|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
|+.-+.+
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9985544
No 71
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=6.6e-16 Score=117.80 Aligned_cols=84 Identities=24% Similarity=0.472 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
++.-|||||||+..||.||.-.|++||+|.+|.+++|..||+++||||+-|++..+..-|+.-|||..+.||.|+|.-..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred cCCc
Q 023297 178 DMNS 181 (284)
Q Consensus 178 ~~~~ 181 (284)
.+..
T Consensus 114 ~Yk~ 117 (219)
T KOG0126|consen 114 NYKK 117 (219)
T ss_pred cccC
Confidence 5443
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=1.8e-14 Score=125.47 Aligned_cols=77 Identities=29% Similarity=0.430 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCH--HHHHHHHHHhCCCCCCCceeEEEE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI--NSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
...+||||||++.+++++|+..|..||.|.++.|++ .+| ||||||+|.+. .++.+||..|||..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 347899999999999999999999999999999994 466 99999999987 789999999999999999999999
Q ss_pred ccc
Q 023297 176 SID 178 (284)
Q Consensus 176 ~~~ 178 (284)
+.+
T Consensus 85 AKP 87 (759)
T PLN03213 85 AKE 87 (759)
T ss_pred ccH
Confidence 863
No 73
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=8e-16 Score=117.35 Aligned_cols=77 Identities=26% Similarity=0.532 Sum_probs=73.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
..-|||+|||+.++|.+|-.+|++||+|.+|.+++|..+|+++||||+.|++..+...|+ .|||..|.||+|+|...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 466999999999999999999999999999999999999999999999999999999999 89999999999999753
No 74
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=5.9e-14 Score=97.37 Aligned_cols=82 Identities=26% Similarity=0.412 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
++...+.|||+|||+++|.+++.++|.+||.|..|+|--.+. .+|-|||.|++..+|.+|++.|+|..+.++.|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 344568899999999999999999999999999999976544 58999999999999999999999999999999999
Q ss_pred EcccC
Q 023297 175 FSIDM 179 (284)
Q Consensus 175 ~~~~~ 179 (284)
+..+.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 98643
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=6.5e-14 Score=93.99 Aligned_cols=72 Identities=38% Similarity=0.694 Sum_probs=67.3
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 101 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
+|||+|||..+++++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|.+|++.+++..+.|+.+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998875 7789999999999999999999999999999998763
No 76
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.52 E-value=1.5e-12 Score=113.71 Aligned_cols=227 Identities=17% Similarity=0.198 Sum_probs=153.8
Q ss_pred cCCCcCCcceEEEEeecchhhhHHHHhhcCCC--------CCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 023297 46 CWSRSHPAGFRSVLAVVDEEAVVVEDEINGKD--------NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELL 117 (284)
Q Consensus 46 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~ 117 (284)
+...+++.|-++|++..+|+..++.+...... .....+.+................|-+++||+.+|++||.
T Consensus 42 ~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~ 121 (510)
T KOG4211|consen 42 PRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIV 121 (510)
T ss_pred eccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHH
Confidence 34457888999999999999888876543221 1111111211222222233456789999999999999999
Q ss_pred HhhccCCceEE-EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcc--------------
Q 023297 118 EMFKPFGTVLS-VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR-------------- 182 (284)
Q Consensus 118 ~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~-------------- 182 (284)
++|+-.-.+.. +.++.+ ..+++.|-|||+|++.+.|++|+ .-+...++.|-|.|-.+......
T Consensus 122 ~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al-~rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpG 199 (510)
T KOG4211|consen 122 EFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIAL-GRHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPG 199 (510)
T ss_pred HHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHH-HHHHHhhccceEEeehhHHHHHHhhccccccccCCCC
Confidence 99998865555 555556 45889999999999999999999 55777777777777554200000
Q ss_pred ---c----cc-----------c---------------------c------------ccCCC----CCCc------cc-cC
Q 023297 183 ---T----RN-----------A---------------------E------------ALISP----PKKI------FV-YE 200 (284)
Q Consensus 183 ---~----~~-----------~---------------------~------------~~~~~----~~~~------~~-~~ 200 (284)
. +. . . ..... +.+. .. ..
T Consensus 200 py~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~ 279 (510)
T KOG4211|consen 200 PYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGP 279 (510)
T ss_pred ccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCC
Confidence 0 00 0 0 00000 0000 00 01
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEE
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~ 276 (284)
....++.++||+..++.+|..+|...-. ..|.|-... +|+..|.|.|+|.+.++|..|+.-++..+..+-|.+-
T Consensus 280 ~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig~-dGr~TGEAdveF~t~edav~Amskd~anm~hrYVElF 353 (510)
T KOG4211|consen 280 GGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEIGP-DGRATGEADVEFATGEDAVGAMGKDGANMGHRYVELF 353 (510)
T ss_pred CCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEeCC-CCccCCcceeecccchhhHhhhccCCcccCcceeeec
Confidence 2266899999999999999999997633 366666554 8999999999999999999999878777777766553
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.52 E-value=2.8e-14 Score=126.49 Aligned_cols=82 Identities=29% Similarity=0.547 Sum_probs=79.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
+.|||||||+++++++|.++|+..|.|.+++++.|+.+|+++||||++|.+.++|.+|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred Cc
Q 023297 180 NS 181 (284)
Q Consensus 180 ~~ 181 (284)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 78
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=8e-14 Score=114.32 Aligned_cols=83 Identities=24% Similarity=0.521 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.+.+||||.-|+++++|..|+..|+.||.|++|+|++|+.+|+++|||||+|++.-+...|. ..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 56799999999999999999999999999999999999999999999999999999999999 69999999999999987
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
+.++
T Consensus 179 RgRT 182 (335)
T KOG0113|consen 179 RGRT 182 (335)
T ss_pred cccc
Confidence 7654
No 79
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=7e-14 Score=121.83 Aligned_cols=77 Identities=25% Similarity=0.421 Sum_probs=70.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCH--HHHHHHH-HhCCCccCCceEEEEe
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD--AERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~--~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
...+|||+||++.+++++|+..|..||.|.+|.|++. +| ||||||+|.+. .++.+|+ .|||..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 3478999999999999999999999999999999944 66 99999999987 7899999 6999999999999999
Q ss_pred ccCC
Q 023297 278 GVDR 281 (284)
Q Consensus 278 a~~k 281 (284)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9864
No 80
>smart00360 RRM RNA recognition motif.
Probab=99.50 E-value=1.1e-13 Score=92.49 Aligned_cols=71 Identities=37% Similarity=0.648 Sum_probs=67.0
Q ss_pred EcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 104 VCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 104 v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|.+|++.+++..++|+.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999987789999999999999999999999999999999998873
No 81
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.5e-14 Score=113.65 Aligned_cols=82 Identities=30% Similarity=0.481 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||++|...+++.-|...|-+||.|.+|.++.|.++++.||||||+|.-.++|.+|+ .||+.++.||+|+|++|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34589999999999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred cCC
Q 023297 279 VDR 281 (284)
Q Consensus 279 ~~k 281 (284)
+|.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 975
No 82
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.8e-14 Score=125.23 Aligned_cols=177 Identities=23% Similarity=0.433 Sum_probs=145.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC-----------Cc-eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPF-----------GT-VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD 165 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~-----------G~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~ 165 (284)
..+.+||+++|+.++++.+..+|..- |+ +..+.+-.. +.|||++|.+.+.|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhh-cccchh
Confidence 46789999999999999999888643 32 555555433 579999999999999999 899999
Q ss_pred CCCceeEEEEcccCCccccccccc------CCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCC
Q 023297 166 VGGREMRVRFSIDMNSRTRNAEAL------ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239 (284)
Q Consensus 166 ~~g~~l~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~ 239 (284)
+.|+.+++....++.......... .............+.+||++||..+++.+++++...||.+....+..+..
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~ 326 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSA 326 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccc
Confidence 999999998877655443322221 11222233345678899999999999999999999999999999999999
Q ss_pred CCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCC
Q 023297 240 GQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 240 ~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k 281 (284)
+|.++||||.+|.++.....|+ .|||+.++++.|.|+.|...
T Consensus 327 ~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 327 TGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred cccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 9999999999999999999999 59999999999999988653
No 83
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.49 E-value=5.2e-12 Score=108.73 Aligned_cols=71 Identities=24% Similarity=0.399 Sum_probs=65.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
|+|+|+|||+++|++.|++-|..||.|..+.|+ +.|+++| .|.|.++++|.+|. .|+|..+.|+.|+|.|+
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 889999999999999999999999999999983 3567776 89999999999999 59999999999999984
No 84
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.8e-14 Score=112.11 Aligned_cols=85 Identities=25% Similarity=0.414 Sum_probs=80.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++||||+|...+++.-|...|-.||+|.+|.++.|-.++++||||||+|.-.|+|..||..||+..+.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCcc
Q 023297 178 DMNSR 182 (284)
Q Consensus 178 ~~~~~ 182 (284)
+....
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 66543
No 85
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=2.6e-13 Score=109.76 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...+|||+||++.+++++|+++|+.||.|.+|+|+++. +.+|+|||+|+++++|..|+.|+|..|.|+.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 35789999999999999999999999999999999884 44679999999999999999999999999999998754
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.47 E-value=1.8e-12 Score=110.67 Aligned_cols=171 Identities=26% Similarity=0.368 Sum_probs=128.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCCCC-C-ceeEEEEc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC-GYLTMGSINSAKNAIIALDGSDVG-G-REMRVRFS 176 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~-g-~~l~v~~~ 176 (284)
-+++|+|+-+.++-+-|..+|++||.|..|--... +.|| |.|+|.+.+.|..|-..|+|..|. | +.|++.++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K-----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK-----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec-----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 35789999999999999999999999987655432 2233 899999999999999999999874 3 66777766
Q ss_pred c----------cCCcccccccccCC------------------------------------CCCCccccCCCcEEEEcCC
Q 023297 177 I----------DMNSRTRNAEALIS------------------------------------PPKKIFVYESPHKLYVGNL 210 (284)
Q Consensus 177 ~----------~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~l~v~nl 210 (284)
. ++........-+.. ...........+.|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 4 11100000000000 0000000011467788887
Q ss_pred C-CCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccC
Q 023297 211 S-WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 211 ~-~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~ 280 (284)
. +.+|.+-|..+|.-||.|.+|+|+.++.+ -|+|+|.+...|+.|+ .|+|..+.|+.|+|.+.+.
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 5 57999999999999999999999998764 3999999999999999 6999999999999999875
No 87
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=3.1e-13 Score=90.65 Aligned_cols=71 Identities=37% Similarity=0.702 Sum_probs=66.1
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEE
Q 023297 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276 (284)
Q Consensus 204 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~ 276 (284)
+|+|.|||..+++++|+++|.+||.+..+.+..+. +.++|+|||+|.+.++|.+|+ .++|..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998876 778999999999999999999 699999999999874
No 88
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.2e-13 Score=99.54 Aligned_cols=79 Identities=27% Similarity=0.404 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
..++|||+||.+-++|++|.++|..+|.|.+|.+-.|+.+..+=|||||+|.+.++|..|+ -++|..++.+.|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 4699999999999999999999999999999999999888889999999999999999999 599999999999999864
No 89
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.46 E-value=2.5e-12 Score=108.58 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=130.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCCCCCceeE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL--DGSDVGGREMR 172 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~g~~l~ 172 (284)
+...+-.|.|++|...+++.||.+.++.||+|..+..+.. +..|.|+|++.+.|+.|+... +-..+.|+.--
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhh
Confidence 3445678999999999999999999999999999888765 346999999999999998533 33456788877
Q ss_pred EEEcccCCcccccccccCCCCCCccccCCCcE--EEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEE
Q 023297 173 VRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250 (284)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~ 250 (284)
+.++......+...+.. .++.. +.|-|--+.++-+-|..++...|.|.+|.|++.. |- .|.||
T Consensus 101 ~NyStsq~i~R~g~es~----------~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--gV---QAmVE 165 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESA----------TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--GV---QAMVE 165 (494)
T ss_pred cccchhhhhccCCCCCC----------CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc--ce---eeEEe
Confidence 88876544433332111 11222 3456667889999999999999999999998873 22 49999
Q ss_pred eCCHHHHHHHH-HhCCCcc--CCceEEEEeccCC
Q 023297 251 FSSDAERDAAL-SLNGTDF--RGRTIIVREGVDR 281 (284)
Q Consensus 251 f~~~~~A~~a~-~l~g~~~--~g~~l~v~~a~~k 281 (284)
|++.+.|++|. +|||..| +-++|+|.||++-
T Consensus 166 Fdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred echhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 99999999999 7999988 6689999999874
No 90
>smart00360 RRM RNA recognition motif.
Probab=99.46 E-value=4e-13 Score=89.74 Aligned_cols=70 Identities=37% Similarity=0.723 Sum_probs=65.8
Q ss_pred EcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEE
Q 023297 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276 (284)
Q Consensus 207 v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~ 276 (284)
|+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|..|+ .++|..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999999998877899999999999999999999 699999999999874
No 91
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=9e-13 Score=88.83 Aligned_cols=74 Identities=38% Similarity=0.688 Sum_probs=68.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 101 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+ .++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987553 7789999999999999999999999999999998864
No 92
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.8e-13 Score=98.54 Aligned_cols=81 Identities=19% Similarity=0.366 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...-.|||.++...+++++|.+.|..||.|+.+.+-.|+-+|-.+|||+|+|++..+|+.|+ ++||..+.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34577999999999999999999999999999999999999999999999999999999999 79999999999999998
Q ss_pred cC
Q 023297 279 VD 280 (284)
Q Consensus 279 ~~ 280 (284)
--
T Consensus 150 Fv 151 (170)
T KOG0130|consen 150 FV 151 (170)
T ss_pred Ee
Confidence 43
No 93
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=5.1e-13 Score=101.64 Aligned_cols=77 Identities=29% Similarity=0.514 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+||+..+++.+|..+|..||.+..|.|-+. +-|||||+|+++.+|..|+ .|||+.|.|..|+|...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34689999999999999999999999999999999774 4679999999999999999 79999999999999887
Q ss_pred cCC
Q 023297 279 VDR 281 (284)
Q Consensus 279 ~~k 281 (284)
.-+
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 543
No 94
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.42 E-value=4.1e-13 Score=119.15 Aligned_cols=81 Identities=31% Similarity=0.601 Sum_probs=77.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCC
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k 281 (284)
+.+||+|+|+++++++|.++|+..|.|..+++..|+++|+++||||++|.+.++|..|+ .|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999 69999999999999999765
Q ss_pred CC
Q 023297 282 TE 283 (284)
Q Consensus 282 ~~ 283 (284)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 95
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=2.2e-11 Score=102.97 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=137.3
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 95 SRARPCELYVCNLPRS-FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
...+++.++|-+|... +.-+.|.++|..||.|+.|++++.+ .|-|.|++.+..+.++|+..||+..+.|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 3446788999999986 7788999999999999999999874 478999999999999999999999999999999
Q ss_pred EEcccCCccc--------------------ccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCc-eEEE
Q 023297 174 RFSIDMNSRT--------------------RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSA 232 (284)
Q Consensus 174 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~v 232 (284)
..+....-.. .+.-.......+.....+.+.|...|.|..++|+.|.++|...+. -.++
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~sv 437 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSV 437 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceE
Confidence 9875322111 000011111223344567799999999999999999999986543 5677
Q ss_pred EEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCc------eEEEEeccCC
Q 023297 233 RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR------TIIVREGVDR 281 (284)
Q Consensus 233 ~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~------~l~v~~a~~k 281 (284)
+|+..+.. + ..-+.+||++.++|..|+ .+|...+.+. .|++.|+.++
T Consensus 438 kvFp~kse-r-SssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 438 KVFPLKSE-R-SSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred Eeeccccc-c-cccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 77766522 2 223799999999999999 7999988763 4666666554
No 96
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=2.2e-12 Score=89.67 Aligned_cols=78 Identities=24% Similarity=0.436 Sum_probs=70.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.-.+.|||.|||+.++.+++.++|.+||.|..|+|--.. ..+|-|||.|++..+|.+|+ .|+|..+.++.+.|-|.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 345789999999999999999999999999999996544 45889999999999999999 79999999999999987
Q ss_pred cC
Q 023297 279 VD 280 (284)
Q Consensus 279 ~~ 280 (284)
.+
T Consensus 93 q~ 94 (124)
T KOG0114|consen 93 QP 94 (124)
T ss_pred CH
Confidence 65
No 97
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=1.5e-11 Score=108.29 Aligned_cols=179 Identities=17% Similarity=0.203 Sum_probs=124.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEe-CCC--CCCccc---EEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR-NPE--TGISRG---CGYLTMGSINSAKNAIIALDGSDVGGR 169 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~-~~~--~~~~~g---~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (284)
..-.++||||+||.+++|++|...|..||.+.- .... ... .--.+| |+|+.|+++..+..-+....- ...
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 345689999999999999999999999998642 2221 101 113456 999999999998876644322 333
Q ss_pred eeEEEEcccCCcccccccccC------CCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhc-cCCceEEEEEeecCCCCC
Q 023297 170 EMRVRFSIDMNSRTRNAEALI------SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFG-RFGTVVSARVLHDRKGQT 242 (284)
Q Consensus 170 ~l~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~v~i~~~~~~~~ 242 (284)
.+.++.+.+......-....+ .-.......++.+||||++||.-++.++|-.+|+ -||.|..+-|-.|.+-+.
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 333333321111110000000 0001122235679999999999999999999998 799999999999988899
Q ss_pred cceEEEEEeCCHHHHHHHH-----HhCCCccCCceEEEEecc
Q 023297 243 TRVFGFISFSSDAERDAAL-----SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 243 ~~g~afV~f~~~~~A~~a~-----~l~g~~~~g~~l~v~~a~ 279 (284)
++|-|-|+|.+..+-.+|| +|+...|.. +|+|+...
T Consensus 412 PkGaGRVtFsnqqsYi~AIsarFvql~h~d~~K-RVEIkPYv 452 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISARFVQLDHTDIDK-RVEIKPYV 452 (520)
T ss_pred CCCcceeeecccHHHHHHHhhheEEEeccccce-eeeeccee
Confidence 9999999999999999999 245555544 78877654
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.39 E-value=3.4e-12 Score=85.96 Aligned_cols=73 Identities=38% Similarity=0.716 Sum_probs=67.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 204 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ .++|+|||+|.+.++|..|+ .+++..+.|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988644 77999999999999999999 6999999999999875
No 99
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=1.2e-12 Score=110.75 Aligned_cols=176 Identities=17% Similarity=0.201 Sum_probs=123.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccC----CceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 100 CELYVCNLPRSFDISELLEMFKPF----GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
-.|-+++||+++++.|+.++|..- |..+.+-++..+ +|+..|-|||.|..+++|..|+ .-|...++.|-|.+-.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL-~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFAL-RKHRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHH-HHHHHHHhHHHHHHHH
Confidence 456778999999999999999632 244566666653 5999999999999999999999 4566666666555543
Q ss_pred cccCCcc--------c------ccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCc-eEE--EEEeecC
Q 023297 176 SIDMNSR--------T------RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVS--ARVLHDR 238 (284)
Q Consensus 176 ~~~~~~~--------~------~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~--v~i~~~~ 238 (284)
+....-. . ........+...........+|.+++||+..+.++|-++|..|-. |.. |.+..+.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 3211000 0 000000001111122234678999999999999999999998854 333 5555554
Q ss_pred CCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 239 KGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 239 ~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.|++.|.|||+|.+.+.|..|. ..+++..++|.|.|--+
T Consensus 320 -qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 320 -QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred -CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 7999999999999999999999 57777778888888654
No 100
>smart00361 RRM_1 RNA recognition motif.
Probab=99.38 E-value=1.8e-12 Score=87.04 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=55.4
Q ss_pred HHHHHHhhc----cCCceEEEE-EEeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 113 ISELLEMFK----PFGTVLSVE-VSRNPET--GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 113 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
+++|+++|+ +||.|.++. +..++.+ +.++|||||+|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999996 7776666 899999999999999999999999999999999986
No 101
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=2.8e-12 Score=109.07 Aligned_cols=78 Identities=37% Similarity=0.720 Sum_probs=75.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
.++|||+|||..+++++|+++|..||.|..+.+..++.++.++|||||+|.+.++|..|+ .++|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999999999999999999999999999999889999999999999999999999 699999999999999954
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=2.8e-12 Score=86.14 Aligned_cols=61 Identities=31% Similarity=0.516 Sum_probs=54.2
Q ss_pred HHHHHHhhc----cCCceEEEE-EeecCCC--CCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEE
Q 023297 216 PEDLRNHFG----RFGTVVSAR-VLHDRKG--QTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276 (284)
Q Consensus 216 ~~~l~~~f~----~~G~v~~v~-i~~~~~~--~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~ 276 (284)
+++|+++|. .||.|.++. +..++.+ +.++|+|||+|.+.++|..|+ .|||+.+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888887 999999995 7777666 899999999999999999999 699999999999863
No 103
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.35 E-value=3.8e-12 Score=81.59 Aligned_cols=55 Identities=33% Similarity=0.651 Sum_probs=49.8
Q ss_pred HHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 219 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
|+++|++||.|.++.+..+. +|+|||+|.+.++|..|+ .|||..++|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997764 578999999999999999 69999999999999986
No 104
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.34 E-value=2.9e-12 Score=109.11 Aligned_cols=203 Identities=18% Similarity=0.168 Sum_probs=129.3
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCC---CCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCc
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDD---SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGT 125 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 125 (284)
+.+++||+||.+.+++....+...-.........+.... .............+|||++||.++++++++++|.+||.
T Consensus 44 t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~ 123 (311)
T KOG4205|consen 44 TGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGK 123 (311)
T ss_pred CCCcccccceecCCCcchheeecccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccce
Confidence 478999999999877766555433222111111111100 01111111224568999999999999999999999999
Q ss_pred eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEE
Q 023297 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205 (284)
Q Consensus 126 i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 205 (284)
|..+.++.|..+.+++||+||+|.+++.+.+++ ...-+.|.|+.+.|..+.++............. .
T Consensus 124 v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~------------~ 190 (311)
T KOG4205|consen 124 VADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKEVMQSTKSSVSTR------------G 190 (311)
T ss_pred eEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccchhhccccccccccc------------c
Confidence 999999999999999999999999999999999 778889999999999998776543322110000 1
Q ss_pred EEcCCCCCCCHHHHHHhhccCCceEEEEEe------ecCCCCCcceEEEEEeCCHHHHHHHH-HhCC
Q 023297 206 YVGNLSWAVKPEDLRNHFGRFGTVVSARVL------HDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265 (284)
Q Consensus 206 ~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~------~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g 265 (284)
.-.|+....+.-.|..+|+.|+.+....-- +... ..+.|++|..|.+......+. .+++
T Consensus 191 ~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~g~~~~~~~~~~~~~~~~~~~ 256 (311)
T KOG4205|consen 191 KGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGP-LFNGGSGYPEFGNSGLGFGYGNKLNR 256 (311)
T ss_pred ccccccccccccccchhccccCcccccccccccccccccc-ccCCCccccccCccccccccccccCC
Confidence 111333333344455555555543310000 0000 135677888998776666665 3444
No 105
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=5.4e-12 Score=80.88 Aligned_cols=56 Identities=29% Similarity=0.663 Sum_probs=50.9
Q ss_pred HHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 116 l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
|+++|++||+|.++.+..+. +++|||+|.+.++|.+|++.|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997753 589999999999999999999999999999999985
No 106
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=2.1e-12 Score=104.57 Aligned_cols=89 Identities=29% Similarity=0.589 Sum_probs=83.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 93 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
.+.-+++|+|||-.||.+..+.+|...|-.||.|.+.++..|+.|+.+++||||.|.++.+|..||..|||..|+-++|+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLK 358 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLK 358 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhh
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCCc
Q 023297 173 VRFSIDMNS 181 (284)
Q Consensus 173 v~~~~~~~~ 181 (284)
|.+..+++.
T Consensus 359 VQLKRPkda 367 (371)
T KOG0146|consen 359 VQLKRPKDA 367 (371)
T ss_pred hhhcCcccc
Confidence 998876654
No 107
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.3e-12 Score=108.14 Aligned_cols=83 Identities=27% Similarity=0.427 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
.++.+.|||..|.+-++++||.-+|+.||.|.+|.+++|..||.+..||||+|.+.+++++|+-.|++..|+.+.|+|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 023297 176 SID 178 (284)
Q Consensus 176 ~~~ 178 (284)
++.
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 863
No 108
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=3.8e-12 Score=104.27 Aligned_cols=114 Identities=20% Similarity=0.290 Sum_probs=97.5
Q ss_pred cceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEE
Q 023297 53 AGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132 (284)
Q Consensus 53 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~ 132 (284)
+.|+||-..++..++.++..+++-...+-....+.+... ....++|+||||.+.++.++|+..|++||+|.+|+|+
T Consensus 36 KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv 111 (346)
T KOG0109|consen 36 KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV 111 (346)
T ss_pred cccceEEeecccccHHHHhhcccceecceEEEEEecccc----CCCccccccCCCCccccCHHHhhhhcccCCceeeeee
Confidence 578888777777888888888888777766554433322 3345899999999999999999999999999999998
Q ss_pred eCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 133 RNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 133 ~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
+| |+||.|.-.++|..|++.|++..|.|++++|+.+..
T Consensus 112 kd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 112 KD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred cc--------eeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 76 999999999999999999999999999999999863
No 109
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.31 E-value=7.1e-12 Score=99.62 Aligned_cols=80 Identities=24% Similarity=0.481 Sum_probs=73.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHH----hhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEE
Q 023297 201 SPHKLYVGNLSWAVKPEDLRN----HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~----~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v 275 (284)
+..+|||.||++.+..++|+. +|++||.|.+|..++ +.+-+|-|||.|++.+.|..|+ +|+|..|.|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445999999999999999888 999999999998865 5667899999999999999999 89999999999999
Q ss_pred EeccCCCC
Q 023297 276 REGVDRTE 283 (284)
Q Consensus 276 ~~a~~k~~ 283 (284)
.||..+++
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99998864
No 110
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.30 E-value=3e-12 Score=108.72 Aligned_cols=179 Identities=17% Similarity=0.243 Sum_probs=144.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
...++|++++...+.+.+...++..+|.+....+........++|++++.|...+.+..|+.....+...++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46889999999999999999999999988877777766778999999999999999999995444456666666655554
Q ss_pred cCCcccccccccCCCCCCccccCCCcEEE-EcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHH
Q 023297 178 DMNSRTRNAEALISPPKKIFVYESPHKLY-VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (284)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 256 (284)
.... ...............++| +.|+++.+++++|+..|..+|.|..++++.+..++..+|+|+|.|.+...
T Consensus 167 ~~~~-------~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~ 239 (285)
T KOG4210|consen 167 RRGL-------RPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNS 239 (285)
T ss_pred cccc-------cccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchh
Confidence 3221 011111111223334555 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCccCCceEEEEeccCCCC
Q 023297 257 RDAALSLNGTDFRGRTIIVREGVDRTE 283 (284)
Q Consensus 257 A~~a~~l~g~~~~g~~l~v~~a~~k~~ 283 (284)
+..++..+...+.|+++.+.+..++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 240 KKLALNDQTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred HHHHhhcccCcccCcccccccCCCCcc
Confidence 999994488899999999999988754
No 111
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.30 E-value=1.2e-11 Score=96.70 Aligned_cols=83 Identities=27% Similarity=0.352 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccC-CceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPF-GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....-+||+.+|.-..+.++..+|.++ |.+..+++.++..||.++|||||+|.+++.|.-|-+.||++.+.|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344679999999999999999999988 7888999999999999999999999999999999999999999999999998
Q ss_pred cccC
Q 023297 176 SIDM 179 (284)
Q Consensus 176 ~~~~ 179 (284)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8654
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=6.9e-12 Score=96.26 Aligned_cols=78 Identities=19% Similarity=0.450 Sum_probs=69.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
..+.|||+|||.++.+.+|+++|-+||.|..|.+... ..+-.||||+|+++.+|..|+ .-||..++|..|+|.|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4588999999999999999999999999999988533 335679999999999999999 699999999999999987
Q ss_pred CC
Q 023297 280 DR 281 (284)
Q Consensus 280 ~k 281 (284)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 53
No 113
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=2.3e-12 Score=101.44 Aligned_cols=143 Identities=22% Similarity=0.261 Sum_probs=117.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
+..++|||+|+...++++-|.++|-+-|+|..+.|..+++ ++.+ ||||.|.++-.+.-|++.+||..+.++.+.+.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3458999999999999999999999999999999987754 5566 9999999999999999999999999999888765
Q ss_pred ccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHH
Q 023297 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (284)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 256 (284)
..... .-|...++++.+...|...|.+..+++..+. +|+++.++|+.+.-.-+
T Consensus 85 ~G~sh--------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~ 137 (267)
T KOG4454|consen 85 CGNSH--------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCA 137 (267)
T ss_pred cCCCc--------------------------chhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhc
Confidence 32100 0045678889999999999999999999987 48888889999877776
Q ss_pred HHHHH-HhCCCcc
Q 023297 257 RDAAL-SLNGTDF 268 (284)
Q Consensus 257 A~~a~-~l~g~~~ 268 (284)
.-.++ ...+...
T Consensus 138 ~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 138 VPFALDLYQGLEL 150 (267)
T ss_pred CcHHhhhhcccCc
Confidence 66666 3455443
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.6e-12 Score=120.11 Aligned_cols=146 Identities=19% Similarity=0.247 Sum_probs=125.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
..++||+||+..+.+.+|...|..+|.+..+.+.-....++.+|+||+.|..++++.+|+....++.++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g----------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG----------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-----------
Confidence 467999999999999999999999998887777655567999999999999999999999554444443
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 258 (284)
...++|.|.|+..|.++++.+|..+|.+++++++..+ .|+++|.|+|.|.+..++.
T Consensus 736 -----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s 791 (881)
T KOG0128|consen 736 -----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADAS 791 (881)
T ss_pred -----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhh
Confidence 1348999999999999999999999999999977766 7999999999999999999
Q ss_pred HHH-HhCCCccCCceEEEEecc
Q 023297 259 AAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 259 ~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
+++ +.++..+.-+.+.|....
T Consensus 792 ~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 792 RKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhcccchhhhhhhcCccccccC
Confidence 999 688888777776666643
No 115
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=91.24 Aligned_cols=80 Identities=18% Similarity=0.293 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC-CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRF-GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
....+|+..+|..+.+.++..+|.++ |.|.++++-+++.+|.++|||||+|++.+.|.-|- .|||+.+.|+.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 44668999999999999999999988 77888899899999999999999999999999999 69999999999999875
Q ss_pred cC
Q 023297 279 VD 280 (284)
Q Consensus 279 ~~ 280 (284)
-+
T Consensus 128 pp 129 (214)
T KOG4208|consen 128 PP 129 (214)
T ss_pred Cc
Confidence 43
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.9e-11 Score=99.02 Aligned_cols=81 Identities=28% Similarity=0.426 Sum_probs=77.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.+.+.|||..|..-+++++|.-+|+.||.|..|.|++|..+|.+..||||+|++.+++.+|. .|++..|.+++|.|.|.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45688999999999999999999999999999999999999999999999999999999999 89999999999999987
Q ss_pred cC
Q 023297 279 VD 280 (284)
Q Consensus 279 ~~ 280 (284)
.+
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 64
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.13 E-value=3e-10 Score=104.30 Aligned_cols=108 Identities=19% Similarity=0.440 Sum_probs=86.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
++|||||+|+..+++.||.++|+.||.|.+|.++.. +|+|||.+....+|++|+..|+.+.+.++.|++.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 589999999999999999999999999999998764 78999999999999999999999999999999999987
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhc
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFG 224 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 224 (284)
+..+. .....+.- .+-|.-+|+.--.++++.+++
T Consensus 495 ~G~ks-e~k~~wD~-----------~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 495 KGPKS-EYKDYWDV-----------ELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred CCcch-hhhhhhhc-----------ccCeeEeehHhcCHHHHHhhh
Confidence 66544 22222221 122333565544444777775
No 118
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.10 E-value=3.4e-10 Score=91.31 Aligned_cols=167 Identities=18% Similarity=0.319 Sum_probs=126.9
Q ss_pred CeEEEcCCCCCCCHHH-H--HHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 100 CELYVCNLPRSFDISE-L--LEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~-l--~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...+++++-..+..+- | ...|+.+-.....+++++ .-+.-++++|+.|.....-.++-..-+++.++-+.++....
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 4566666666655443 2 566776666666666666 34778899999999988888887777777777776554433
Q ss_pred ccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHH
Q 023297 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (284)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 256 (284)
... ..+..........+||.+.|..+++++.|-..|.+|-.-...++++|.-+|+++||+||-|.+..+
T Consensus 176 tsw-----------edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad 244 (290)
T KOG0226|consen 176 TSW-----------EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPAD 244 (290)
T ss_pred ccc-----------CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHH
Confidence 211 111111222345789999999999999999999999888899999999999999999999999999
Q ss_pred HHHHH-HhCCCccCCceEEEEec
Q 023297 257 RDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 257 A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
+..|+ +|||+-++.+.|++...
T Consensus 245 ~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 245 YVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred HHHHHHhhcccccccchhHhhhh
Confidence 99999 79999999999887543
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.3e-09 Score=91.69 Aligned_cols=78 Identities=26% Similarity=0.455 Sum_probs=70.0
Q ss_pred ccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-H-hCCCccCCceEEE
Q 023297 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S-LNGTDFRGRTIIV 275 (284)
Q Consensus 198 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~-l~g~~~~g~~l~v 275 (284)
......+|||++|...+++.+|+++|.+||.|+.+.+.... |+|||+|.+.++|..|. + +|...|+|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 33556899999999999999999999999999999998764 37999999999999999 4 8888899999999
Q ss_pred EeccCC
Q 023297 276 REGVDR 281 (284)
Q Consensus 276 ~~a~~k 281 (284)
.|+.++
T Consensus 298 ~Wg~~~ 303 (377)
T KOG0153|consen 298 KWGRPK 303 (377)
T ss_pred EeCCCc
Confidence 999983
No 120
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.00 E-value=1e-09 Score=97.64 Aligned_cols=82 Identities=23% Similarity=0.392 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.-+++|||.+|+..+.-.||+.+|++||.|.-.+++.+..+...++|+||++.+.++|.+||+.|+...++|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999999999999888888999999999999999999999999999999999988
Q ss_pred cc
Q 023297 177 ID 178 (284)
Q Consensus 177 ~~ 178 (284)
..
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 64
No 121
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=3.8e-09 Score=88.89 Aligned_cols=78 Identities=15% Similarity=0.327 Sum_probs=68.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CCCCCceeEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRV 173 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~~l~v 173 (284)
....-.+|||+||-..+++.+|++.|.+||+|+++.+... +|+|||+|.+.++|+.|.+.+-. ..++|++|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3445689999999999999999999999999999999875 56999999999999999966544 5579999999
Q ss_pred EEccc
Q 023297 174 RFSID 178 (284)
Q Consensus 174 ~~~~~ 178 (284)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99877
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.91 E-value=2.9e-09 Score=97.93 Aligned_cols=75 Identities=27% Similarity=0.435 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
-.+||||++|+..+++.+|..+|+.||.|.+|.++.. +|+|||.+....+|.+|+ +|++..+.++.|+|.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 4489999999999999999999999999999988754 568999999999999999 799999999999999998
Q ss_pred CC
Q 023297 280 DR 281 (284)
Q Consensus 280 ~k 281 (284)
.+
T Consensus 494 g~ 495 (894)
T KOG0132|consen 494 GK 495 (894)
T ss_pred cC
Confidence 65
No 123
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.87 E-value=1.2e-08 Score=82.58 Aligned_cols=81 Identities=23% Similarity=0.406 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
.....+||-|.|..+++++-|-..|++|-.....++++|..||+++||+||.|.+..++.+|+..|+|..++.+.|.+.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44568999999999999999999999998888899999999999999999999999999999999999999999988765
Q ss_pred c
Q 023297 176 S 176 (284)
Q Consensus 176 ~ 176 (284)
+
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 4
No 124
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.86 E-value=1.3e-08 Score=83.62 Aligned_cols=84 Identities=25% Similarity=0.412 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
....+|+|.|||+.++++||+++|.+||.+..+-+..+ ..|.+.|.|-|.|...++|.+|++.++|..++|+.+.+...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 33478999999999999999999999999999999888 46999999999999999999999999999999999999887
Q ss_pred ccCCc
Q 023297 177 IDMNS 181 (284)
Q Consensus 177 ~~~~~ 181 (284)
.....
T Consensus 160 ~~~~~ 164 (243)
T KOG0533|consen 160 SSPSQ 164 (243)
T ss_pred cCccc
Confidence 64443
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.86 E-value=1.2e-08 Score=83.79 Aligned_cols=82 Identities=24% Similarity=0.369 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
....+|+|.|||+.+++++|+++|+.||.++.+-+.+++ .|.+.|.|-|.|...++|.+|+ .+||..++|+.|++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 445789999999999999999999999999999999887 8999999999999999999999 69999999999999877
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
.+..
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6554
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=2.9e-09 Score=99.40 Aligned_cols=160 Identities=19% Similarity=0.282 Sum_probs=131.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++||+|||+..+++.+|+..|..+|.|.+|.|-.-+ .+...-||||.|.+...+-+|...+.+..|....+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3456899999999999999999999999999999986542 355566899999999999999989999888655555544
Q ss_pred cccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHH
Q 023297 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255 (284)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 255 (284)
... .....+.+++++|...+....|...|..||.|..|.+-.... ||+|.|++..
T Consensus 448 G~~-------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~------yayi~yes~~ 502 (975)
T KOG0112|consen 448 GQP-------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP------YAYIQYESPP 502 (975)
T ss_pred ccc-------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc------ceeeecccCc
Confidence 422 113346799999999999999999999999999987754432 8999999999
Q ss_pred HHHHHH-HhCCCccCC--ceEEEEeccCC
Q 023297 256 ERDAAL-SLNGTDFRG--RTIIVREGVDR 281 (284)
Q Consensus 256 ~A~~a~-~l~g~~~~g--~~l~v~~a~~k 281 (284)
.|+.|+ .|-|..|+| +++.|.|+.+.
T Consensus 503 ~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 503 AAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred cchhhHHHHhcCcCCCCCcccccccccCC
Confidence 999999 699999976 66888887653
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.82 E-value=3.7e-08 Score=69.51 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=68.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhcc--CCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccC----CceEEE
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGR--FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR----GRTIIV 275 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~----g~~l~v 275 (284)
+||.|+|+|...+.++|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|.... .++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999964 377888999999989999999999999999999999 69999885 577888
Q ss_pred Eecc
Q 023297 276 REGV 279 (284)
Q Consensus 276 ~~a~ 279 (284)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8885
No 128
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.81 E-value=2.8e-08 Score=84.73 Aligned_cols=173 Identities=13% Similarity=0.103 Sum_probs=114.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
....|-.++||...++.+|..+|+-.....-...+-....|+..|.+.|.|.++|.-+-|+ .-+.+.+.++.|.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhh-HhhhhhccCCceeeeccC
Confidence 3455678899999999999999975422211111111133667899999999999999888 446677788888887665
Q ss_pred cCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccC----CceEEEEEeecCCCCCcceEEEEEeCC
Q 023297 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRF----GTVVSARVLHDRKGQTTRVFGFISFSS 253 (284)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~ 253 (284)
...--.-...... ...........-.|.+++||+++++.++.++|.+. |..+.|-+... .+|+..|.|||.|..
T Consensus 138 ge~f~~iagg~s~-e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 138 GEEFLKIAGGTSN-EAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFAC 215 (508)
T ss_pred chhheEecCCccc-cCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecC
Confidence 3322111100000 00111111234568899999999999999999732 34555555444 488999999999999
Q ss_pred HHHHHHHHHhCCCccCCceE
Q 023297 254 DAERDAALSLNGTDFRGRTI 273 (284)
Q Consensus 254 ~~~A~~a~~l~g~~~~g~~l 273 (284)
+++|+.|+.-|...++-|.|
T Consensus 216 ee~aq~aL~khrq~iGqRYI 235 (508)
T KOG1365|consen 216 EEDAQFALRKHRQNIGQRYI 235 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHH
Confidence 99999999555555544444
No 129
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.80 E-value=9.9e-09 Score=84.51 Aligned_cols=81 Identities=23% Similarity=0.377 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
.....+||+|+++.++.+++...|+.||.+..+.++.|+..+.++||+||+|.+.+.+..++.|||..+.|+.+.|.+.+
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKR 178 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeee
Confidence 34577999999999999999999999999999999999988899999999999999999999999999999999999865
Q ss_pred C
Q 023297 280 D 280 (284)
Q Consensus 280 ~ 280 (284)
-
T Consensus 179 ~ 179 (231)
T KOG4209|consen 179 T 179 (231)
T ss_pred e
Confidence 3
No 130
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.80 E-value=3.9e-09 Score=90.06 Aligned_cols=165 Identities=19% Similarity=0.112 Sum_probs=121.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET---GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
..|.|.||.+.++.++++.+|...|.|.++.|+.+... ......|||-|.+...+..|- .|.+..+-++.|.|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 57999999999999999999999999999999874332 234568999999999999988 78888888888877665
Q ss_pred ccCCccccccc---------------c---cCCCCCCc---------------------cccCCCcEEEEcCCCCCCCHH
Q 023297 177 IDMNSRTRNAE---------------A---LISPPKKI---------------------FVYESPHKLYVGNLSWAVKPE 217 (284)
Q Consensus 177 ~~~~~~~~~~~---------------~---~~~~~~~~---------------------~~~~~~~~l~v~nl~~~~~~~ 217 (284)
..........- . ....+... ....-.+++++.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 42222111000 0 00000000 001122779999999999999
Q ss_pred HHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccC
Q 023297 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFR 269 (284)
Q Consensus 218 ~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~ 269 (284)
++.+.|+.+|.|...++--. ...-+|.++|....+...|+.++|.++.
T Consensus 167 e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 99999999999887766433 2344788999999999999999998775
No 131
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.78 E-value=1.6e-08 Score=89.69 Aligned_cols=81 Identities=26% Similarity=0.394 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.....|||+|||.+++.++|+++|+.||+|+...|......++..+||||+|.+.+++..||+ .+-..+++++|.|+--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEec
Confidence 344569999999999999999999999999998886643335555999999999999999994 4677889999999866
Q ss_pred cc
Q 023297 177 ID 178 (284)
Q Consensus 177 ~~ 178 (284)
..
T Consensus 365 ~~ 366 (419)
T KOG0116|consen 365 RP 366 (419)
T ss_pred cc
Confidence 54
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.74 E-value=1.1e-07 Score=67.09 Aligned_cols=78 Identities=12% Similarity=0.203 Sum_probs=66.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhcc--CCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC----CceeEE
Q 023297 100 CELYVCNLPRSFDISELLEMFKP--FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG----GREMRV 173 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~l~v 173 (284)
++|.|+|||...|.++|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988854 356778889999999999999999999999999999999999885 334455
Q ss_pred EEcc
Q 023297 174 RFSI 177 (284)
Q Consensus 174 ~~~~ 177 (284)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5553
No 133
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.74 E-value=2.2e-08 Score=82.46 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
....+...+||+|+.+.++.+++...|+.||.|..+.+..|..+|.++||+||+|.+.+.+++++. |+|..+.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 345566899999999999999999999999999999999999989999999999999999999995 9999999999999
Q ss_pred EEcccC
Q 023297 174 RFSIDM 179 (284)
Q Consensus 174 ~~~~~~ 179 (284)
.+....
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 887643
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=1.3e-08 Score=90.85 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=110.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|+|-|||..+++++|+.+|+.||+|..++.-+. .+|.+||+|.|..+|++|++.|++..+.|+.|....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 345689999999999999999999999999999665444 478999999999999999999999999999988221
Q ss_pred cccCCccccccc----ccCCCCC-CccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEE
Q 023297 176 SIDMNSRTRNAE----ALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250 (284)
Q Consensus 176 ~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~ 250 (284)
.......-.... .-..+.. .....-....+++ .|+...+..-++.++.-+|.+.. +.... -.-.-|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~-----~~hq~~~~ 219 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPL-----LNHQRFVE 219 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-ccccc-----hhhhhhhh
Confidence 111100000000 0000000 0000011122333 27877777777777777777555 32211 11135788
Q ss_pred eCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 251 FSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 251 f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
|.+..++..+..-.|..+.+....+++..+
T Consensus 220 ~~~~~s~a~~~~~~G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 220 FADNRSYAFSEPRGGFLISNSSGVITFSGP 249 (549)
T ss_pred hccccchhhcccCCceecCCCCceEEecCC
Confidence 888888855542227777777766666543
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.72 E-value=2.3e-07 Score=84.75 Aligned_cols=178 Identities=15% Similarity=0.021 Sum_probs=124.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.+.+.+-+++++++....|++++|.-. .|....|..+...+.-.|-++|.|....++.+|+ .-+...+-.|.+.+...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCchhhhhcceeecCC
Confidence 345677788999999999999998643 3555556555444444789999999999999999 44666666777777554
Q ss_pred ccCCcccccccc----------------------cCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEE-EE
Q 023297 177 IDMNSRTRNAEA----------------------LISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS-AR 233 (284)
Q Consensus 177 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-v~ 233 (284)
............ ................|||..||..+++.++.++|...-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 322211000000 0000011122345688999999999999999999998777888 55
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCceEEEEe
Q 023297 234 VLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVRE 277 (284)
Q Consensus 234 i~~~~~~~~~~g~afV~f~~~~~A~~a~~-l~g~~~~g~~l~v~~ 277 (284)
|-+.. +++.++.|||+|..++++..|.. -+..-++.+.|+|.-
T Consensus 467 lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 467 LTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred eccCC-cccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 55544 78889999999999999999985 444455667788764
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.71 E-value=3.2e-08 Score=88.35 Aligned_cols=81 Identities=31% Similarity=0.599 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|+|.+|...+...+|+.+|.+||.|.-.+|+.+.-+...+.|+||++.+.++|.+|| .||..++.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34588999999999999999999999999999999998777788999999999999999999 69999999999999987
Q ss_pred cC
Q 023297 279 VD 280 (284)
Q Consensus 279 ~~ 280 (284)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 64
No 137
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.63 E-value=1.5e-07 Score=79.43 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=70.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS--------ARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR 271 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~ 271 (284)
.+..|||.|||.++|.+++.++|.++|.|.+ |++.++. .|..+|-|++.|--.++...|+ -|++..++|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3467999999999999999999999997654 7888887 5999999999999999999999 5999999999
Q ss_pred eEEEEecc
Q 023297 272 TIIVREGV 279 (284)
Q Consensus 272 ~l~v~~a~ 279 (284)
.|+|..|+
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999875
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.62 E-value=1e-07 Score=84.63 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=69.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
...|||.|||.+++.++|+++|..||.|+...|......++...||||+|.+.+++..|+.-+-..++|++|.|.-.+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 3559999999999999999999999999999998765344444899999999999999997778889999999987665
No 139
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.59 E-value=3.3e-07 Score=72.88 Aligned_cols=81 Identities=28% Similarity=0.398 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecC-CCCCcceEEEEEeCCHHHHHHHH-HhCCCcc---CCceEEEE
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR-KGQTTRVFGFISFSSDAERDAAL-SLNGTDF---RGRTIIVR 276 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~---~g~~l~v~ 276 (284)
-++|||.+||.++.-.+|..+|..|-..+...+.... ...-.+-+|||+|.+...|..|+ +|||..| .+..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 5899999999999999999999998666766665433 22344578999999999999999 7999998 58999999
Q ss_pred eccCCC
Q 023297 277 EGVDRT 282 (284)
Q Consensus 277 ~a~~k~ 282 (284)
+|+..+
T Consensus 114 lAKSNt 119 (284)
T KOG1457|consen 114 LAKSNT 119 (284)
T ss_pred ehhcCc
Confidence 998765
No 140
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.58 E-value=1.4e-07 Score=86.33 Aligned_cols=82 Identities=29% Similarity=0.418 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE---TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
.+..++|||+||++.++++.|...|..||+|..++|+.... ..+.+-+|||.|.+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678999999999999999999999999999999986422 234556899999999999999999999999999999
Q ss_pred EEEcc
Q 023297 173 VRFSI 177 (284)
Q Consensus 173 v~~~~ 177 (284)
+-|..
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99985
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.56 E-value=6.8e-09 Score=89.44 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=119.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-CCCceeEEEEccc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD-VGGREMRVRFSID 178 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~~~~ 178 (284)
+.+|++||.+.++..+|..+|...-.-.+-.++. -.||+||.+.+...|.+|++.++|+. +.|.++.+....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4699999999999999999997642111111222 14899999999999999999999975 7899999988865
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEe-ecCCCCCcceEEEEEeCCHHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL-HDRKGQTTRVFGFISFSSDAER 257 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~-~~~~~~~~~g~afV~f~~~~~A 257 (284)
+.. ..+.+-|.|+|....++.|-.+...||.++.|... .+.++ -..=|+|.+.+.+
T Consensus 76 kkq-------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~ 132 (584)
T KOG2193|consen 76 KKQ-------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQH 132 (584)
T ss_pred HHH-------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHH
Confidence 432 23558899999999999999999999999998763 33322 1235789999999
Q ss_pred HHHH-HhCCCccCCceEEEEecc
Q 023297 258 DAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 258 ~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
..|+ .++|..+....+++.|--
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCc
Confidence 9999 799999999999988853
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=3e-08 Score=78.54 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=69.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCceEEEEecc
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVREGV 279 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~-l~g~~~~g~~l~v~~a~ 279 (284)
.++|||.|+...++++.|.++|-+.|.|.+|.|..++ .++.+ ||||.|.+.....-|++ +||..+.+..++|++-.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 4889999999999999999999999999999999887 56666 99999999999999995 89999999999998754
No 143
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=2.2e-07 Score=74.90 Aligned_cols=117 Identities=25% Similarity=0.335 Sum_probs=90.4
Q ss_pred CcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCC------------------CccCCCCCCCCCeEEEcCCCCCCCH
Q 023297 52 PAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS------------------SVEEPRSRARPCELYVCNLPRSFDI 113 (284)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~v~nl~~~~t~ 113 (284)
..||+||.+.+..++..+.-.+++....+.....+.. ...........+.+.|.+++..+.+
T Consensus 34 k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~ 113 (216)
T KOG0106|consen 34 KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSW 113 (216)
T ss_pred ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhH
Confidence 5688888888888888888888887766554211111 1111122445688999999999999
Q ss_pred HHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 114 ~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.+|.+.|.++|.+....+ ..+++||+|...++|.+|+..|++..+.|+.|.+...
T Consensus 114 qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 114 QDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred HHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 999999999999854444 2468999999999999999999999999999999444
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=1.3e-07 Score=84.46 Aligned_cols=70 Identities=27% Similarity=0.394 Sum_probs=62.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
.+.++|+|.|||..+++++|..+|+.||+|+.|+- +...+|.+||+|.|..+|++|+ +|++.++.|++|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34588999999999999999999999999999655 4445778999999999999999 7999999999987
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.30 E-value=2.7e-06 Score=57.33 Aligned_cols=68 Identities=35% Similarity=0.461 Sum_probs=47.5
Q ss_pred CeEEEcCCCCCCCHHHH----HHhhccCC-ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 100 CELYVCNLPRSFDISEL----LEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l----~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
..|||.|||.+.+...| +.++..|| .|.+|. .+-|+|.|.+++.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46899999999987765 45556776 465541 2579999999999999999999999999999999
Q ss_pred Ecc
Q 023297 175 FSI 177 (284)
Q Consensus 175 ~~~ 177 (284)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 884
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.24 E-value=1.9e-06 Score=79.19 Aligned_cols=80 Identities=31% Similarity=0.502 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCC---CCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEE
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK---GQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~ 276 (284)
..++|||+||+..++++.|...|+.||.|..++|+..+. ..+.+-++||.|-+..+|.+|+ .|+|..+.+..+++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 457899999999999999999999999999999986642 3456678999999999999999 699999999999999
Q ss_pred eccC
Q 023297 277 EGVD 280 (284)
Q Consensus 277 ~a~~ 280 (284)
|++.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9953
No 147
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.23 E-value=2.7e-06 Score=72.51 Aligned_cols=130 Identities=23% Similarity=0.228 Sum_probs=95.4
Q ss_pred cCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCC--------CccCCCCCCCCCeEE-EcCCCCCCCHHHHHHhh
Q 023297 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS--------SVEEPRSRARPCELY-VCNLPRSFDISELLEMF 120 (284)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~-v~nl~~~~t~~~l~~~f 120 (284)
...+|+.++.+...+....+................+-. ............++| |++|+..+++++|+..|
T Consensus 127 ~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~ 206 (285)
T KOG4210|consen 127 LSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHF 206 (285)
T ss_pred cccccceeeccccHHHHHHHHHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhc
Confidence 346788888888777666555443322222222111100 011112223345566 99999999999999999
Q ss_pred ccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCC
Q 023297 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180 (284)
Q Consensus 121 ~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 180 (284)
..+|.|..+++..++.++..+|||||.|.+...+..++.. +...+.++.+.+....+..
T Consensus 207 ~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 207 VSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred cCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 9999999999999999999999999999999999999977 8899999999998886543
No 148
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.22 E-value=1.1e-06 Score=74.83 Aligned_cols=83 Identities=22% Similarity=0.299 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVV--------SARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
....+|||-+||..+++++|.++|.++|.|. .|.|.++++++.+||-|.|.|.+...|++|+ -++++.|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3457799999999999999999999998764 4778889999999999999999999999999 599999999
Q ss_pred ceEEEEeccCCC
Q 023297 271 RTIIVREGVDRT 282 (284)
Q Consensus 271 ~~l~v~~a~~k~ 282 (284)
..|+|..|..++
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999988765
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.20 E-value=1e-05 Score=54.58 Aligned_cols=68 Identities=26% Similarity=0.323 Sum_probs=46.1
Q ss_pred cEEEEcCCCCCCCHH----HHHHhhccCCc-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEE
Q 023297 203 HKLYVGNLSWAVKPE----DLRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~----~l~~~f~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~ 276 (284)
..|+|.|||...+-. .|++++..+|. |..|. .|-|+|.|.+++.|.+|. .|+|..+.|+.|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 458999999988754 46777778864 55551 124999999999999999 699999999999999
Q ss_pred eccC
Q 023297 277 EGVD 280 (284)
Q Consensus 277 ~a~~ 280 (284)
|...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9843
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.14 E-value=8e-06 Score=59.00 Aligned_cols=70 Identities=26% Similarity=0.451 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-----CCCCceeEEE
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS-----DVGGREMRVR 174 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~-----~~~g~~l~v~ 174 (284)
+.|+|.+++..++.++|++.|++||.|..|.+.... ..|||.|.+.+.|++|++.+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 578999999999999999999999999999887652 36999999999999999876544 3455555444
Q ss_pred E
Q 023297 175 F 175 (284)
Q Consensus 175 ~ 175 (284)
.
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 3
No 151
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.12 E-value=8.7e-06 Score=74.77 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=67.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
+.|-+.|+|++++-+||.++|..|-.+..-.+++-.+.|...|.|.|.|++.++|..|. .|+++.|..+.|++..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 57899999999999999999999976666555666678999999999999999999999 6999999999999864
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.12 E-value=1.8e-06 Score=70.11 Aligned_cols=73 Identities=23% Similarity=0.391 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCC--------CCccc----EEEEEeCCHHHHHHHHHHhCCCC
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET--------GISRG----CGYLTMGSINSAKNAIIALDGSD 165 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~--------~~~~g----~afv~f~~~~~a~~a~~~l~~~~ 165 (284)
....||+++||+.+...-|+++|.+||.|-.|.+.....+ |.+++ -|+|+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999775544 33333 37899999999999999999999
Q ss_pred CCCce
Q 023297 166 VGGRE 170 (284)
Q Consensus 166 ~~g~~ 170 (284)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.08 E-value=1.6e-05 Score=67.10 Aligned_cols=80 Identities=21% Similarity=0.429 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCCCCCHHHH------HHhhccCCceEEEEEEeCCCC-CCcccEE--EEEeCCHHHHHHHHHHhCCCCCCC
Q 023297 98 RPCELYVCNLPRSFDISEL------LEMFKPFGTVLSVEVSRNPET-GISRGCG--YLTMGSINSAKNAIIALDGSDVGG 168 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l------~~~f~~~G~i~~~~~~~~~~~-~~~~g~a--fv~f~~~~~a~~a~~~l~~~~~~g 168 (284)
..+-+||-+||+.+..++. .++|.+||.|..|.+-+.... ..-.+.+ ||+|.+.++|.+||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3467899999999876662 489999999998877543211 1112223 999999999999999999999999
Q ss_pred ceeEEEEcc
Q 023297 169 REMRVRFSI 177 (284)
Q Consensus 169 ~~l~v~~~~ 177 (284)
|.|+..+..
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999998875
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.06 E-value=1.4e-05 Score=57.66 Aligned_cols=68 Identities=19% Similarity=0.358 Sum_probs=42.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-H--hC---CCccCCceEEEE
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S--LN---GTDFRGRTIIVR 276 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~--l~---g~~~~g~~l~v~ 276 (284)
+.|.|.+++..++.++|++.|++||.|..|.+.+... .|+|.|.+.+.|+.|+ + .. +..+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5688999999999999999999999999998877653 4999999999999998 3 33 446677766654
No 155
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=1.1e-05 Score=72.46 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCC--HH----HHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC-Cce
Q 023297 98 RPCELYVCNLPRSFD--IS----ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GRE 170 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t--~~----~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~ 170 (284)
-...|+|.|+|.--. .+ -|..+|+++|+|..+.++.+.. |..+||.|++|.+..+|..|++.|||+.++ ++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 447899999997532 22 2567899999999999998866 459999999999999999999999999986 788
Q ss_pred eEEEEcccC
Q 023297 171 MRVRFSIDM 179 (284)
Q Consensus 171 l~v~~~~~~ 179 (284)
+.|....+-
T Consensus 136 f~v~~f~d~ 144 (698)
T KOG2314|consen 136 FFVRLFKDF 144 (698)
T ss_pred EEeehhhhH
Confidence 888766543
No 156
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.02 E-value=2.2e-07 Score=86.82 Aligned_cols=210 Identities=17% Similarity=0.090 Sum_probs=140.4
Q ss_pred cceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCC-----CccCCCCCCCCCeEEEcCCCCCCCHH-HHHHhhccCCce
Q 023297 53 AGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS-----SVEEPRSRARPCELYVCNLPRSFDIS-ELLEMFKPFGTV 126 (284)
Q Consensus 53 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~v~nl~~~~t~~-~l~~~f~~~G~i 126 (284)
.++++......+++.+..+.+..-....++...-.. ..............++.++-+...+. ..+..|+.+|.|
T Consensus 520 ~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~v 599 (881)
T KOG0128|consen 520 LRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNV 599 (881)
T ss_pred HHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhccccc
Confidence 344555556666666666555543333332211100 01111122345677888888877665 678889999999
Q ss_pred EEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEE
Q 023297 127 LSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206 (284)
Q Consensus 127 ~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 206 (284)
+.+++......-...-++++.+....+++.+. ...+..+.++.+.|..+........ ...........+++|
T Consensus 600 ekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad~~~~~~~-------~kvs~n~~R~~~~~f 671 (881)
T KOG0128|consen 600 EKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLADAEEKEEN-------FKVSPNEIRDLIKIF 671 (881)
T ss_pred ccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCCCchhhhhc-------cCcCchHHHHHHHHH
Confidence 99998763221122227889999999999998 7788888888888877754431111 000111112236789
Q ss_pred EcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCC
Q 023297 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRG 270 (284)
Q Consensus 207 v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g 270 (284)
+.||+..+.+.+|...|..+|.+..+.+......++.+|+|+|+|..++++.+|++++...+.|
T Consensus 672 vsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 672 VSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 9999999999999999999999888877755567889999999999999999999655444444
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.91 E-value=1e-05 Score=68.97 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceE--------EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVL--------SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (284)
....+|||-+||..+++.+|.++|.++|.|. .|+|-+++.|+..+|-|.|.|.+...|+.|+.-+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3446899999999999999999999999875 47778899999999999999999999999999999999999
Q ss_pred ceeEEEEcccCC
Q 023297 169 REMRVRFSIDMN 180 (284)
Q Consensus 169 ~~l~v~~~~~~~ 180 (284)
..|+|..+....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998876444
No 158
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.88 E-value=1e-05 Score=68.53 Aligned_cols=78 Identities=22% Similarity=0.235 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCc--eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGT--VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...+|||||-+.+|++||.+.+...|. +.++++..+..+|+++|||+|...+..++++.++.|..+.++|+.-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 356899999999999999999988874 778899999889999999999999999999999999999999988777543
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.86 E-value=4.2e-05 Score=64.68 Aligned_cols=81 Identities=19% Similarity=0.379 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCCCHHHH------HHhhccCCceEEEEEeecCCCCC-cceE--EEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 201 SPHKLYVGNLSWAVKPEDL------RNHFGRFGTVVSARVLHDRKGQT-TRVF--GFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l------~~~f~~~G~v~~v~i~~~~~~~~-~~g~--afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
..+-+||-+|+..+..+++ .++|++||.|.+|.|-+...... ..+. .+|+|.+.++|.+|+ +.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 4466899999988777662 47899999999998866542211 1222 399999999999999 799999999
Q ss_pred ceEEEEeccCC
Q 023297 271 RTIIVREGVDR 281 (284)
Q Consensus 271 ~~l~v~~a~~k 281 (284)
|.|+..|..-|
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999987643
No 160
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.73 E-value=1.9e-05 Score=64.34 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=60.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCC--------CCcce----EEEEEeCCHHHHHHHH-HhCCCccC
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG--------QTTRV----FGFISFSSDAERDAAL-SLNGTDFR 269 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~--------~~~~g----~afV~f~~~~~A~~a~-~l~g~~~~ 269 (284)
..||++++|...+-..|+++|..||.|-+|.+.+...+ |..++ .|+|+|.+...|..+. .|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 56999999999999999999999999999999876544 22222 3799999999999988 69999999
Q ss_pred Cce
Q 023297 270 GRT 272 (284)
Q Consensus 270 g~~ 272 (284)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 975
No 161
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.72 E-value=8.6e-05 Score=61.71 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=53.2
Q ss_pred HHHHHHhhccCCceEEEEEeecCCCCCcc-eEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTR-VFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 216 ~~~l~~~f~~~G~v~~v~i~~~~~~~~~~-g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
++++++.|++||.|.+|.|+.+....... --.||+|...++|.+|+ -|||+-|+|+.++..|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 57889999999999999998775332111 12699999999999999 799999999999988865
No 162
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.67 E-value=0.00018 Score=51.26 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=52.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEE-EeecC------CCCCcceEEEEEeCCHHHHHHHHHhCCCccCCc-eE
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSAR-VLHDR------KGQTTRVFGFISFSSDAERDAALSLNGTDFRGR-TI 273 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~-i~~~~------~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~-~l 273 (284)
.+-|.|.+.|.. ....|.++|++||.|.+.. +.++. .......+..|+|.++.+|.+||..||..+.|. .+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 356889999987 6678889999999987774 11110 011123378999999999999999999999886 45
Q ss_pred EEEecc
Q 023297 274 IVREGV 279 (284)
Q Consensus 274 ~v~~a~ 279 (284)
-|.|.+
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 577764
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.65 E-value=0.00018 Score=58.83 Aligned_cols=83 Identities=31% Similarity=0.412 Sum_probs=74.2
Q ss_pred HHHHHHHhCCCCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEE
Q 023297 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSAR 233 (284)
Q Consensus 154 a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~ 233 (284)
|+.|-..|++....|+.|+|.|+.. ..|||.||...++.+.+.+.|..||.|....
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av 62 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH------------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAV 62 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc------------------------ceEEEEecchhhhhHHHHHhhhhcCccchhe
Confidence 4556667899999999999999952 4599999999999999999999999999998
Q ss_pred EeecCCCCCcceEEEEEeCCHHHHHHHH
Q 023297 234 VLHDRKGQTTRVFGFISFSSDAERDAAL 261 (284)
Q Consensus 234 i~~~~~~~~~~g~afV~f~~~~~A~~a~ 261 (284)
+..|. .++..|-++|+|...-.|.+|+
T Consensus 63 ~~vD~-r~k~t~eg~v~~~~k~~a~~a~ 89 (275)
T KOG0115|consen 63 AKVDD-RGKPTREGIVEFAKKPNARKAA 89 (275)
T ss_pred eeecc-cccccccchhhhhcchhHHHHH
Confidence 88885 7888899999999999999998
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.42 E-value=0.00035 Score=43.71 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=41.6
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 158 (284)
+.|-|.|.+.+..+. +...|..||+|..+.+... .-..||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 568888998877654 4558889999999887622 347999999999999985
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.41 E-value=0.00048 Score=52.06 Aligned_cols=56 Identities=32% Similarity=0.556 Sum_probs=45.4
Q ss_pred HHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 217 ~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
.+|-+.|..||.+.-+++.-+. -+|+|.+-+.|.+|++++|.+++|+.|+|+...+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 3677778899998877776542 7999999999999999999999999999987654
No 166
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.37 E-value=0.00033 Score=63.28 Aligned_cols=74 Identities=24% Similarity=0.350 Sum_probs=59.1
Q ss_pred cEEEEcCCCCCCC------HHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCcc-CCceEE
Q 023297 203 HKLYVGNLSWAVK------PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF-RGRTII 274 (284)
Q Consensus 203 ~~l~v~nl~~~~~------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~-~g~~l~ 274 (284)
..|+|.|+|---. ..-|..+|+++|++..+.++.+.++| .+||.|++|.+..+|..|+ +|||+.+ .+.+..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 5677888875321 23467889999999999999887554 9999999999999999999 7999988 556666
Q ss_pred EEe
Q 023297 275 VRE 277 (284)
Q Consensus 275 v~~ 277 (284)
|..
T Consensus 138 v~~ 140 (698)
T KOG2314|consen 138 VRL 140 (698)
T ss_pred eeh
Confidence 553
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.32 E-value=0.00056 Score=42.76 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=41.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 261 (284)
+.|-|.+.+.... +.+..+|..||.|.++.+....+ ..+|.|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 4577888886655 55666888999999998873322 6999999999999985
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.26 E-value=0.00013 Score=59.75 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=49.7
Q ss_pred HHHhhc-cCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 116 LLEMFK-PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 116 l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
|...|+ +||+|+++.+..+- .-.-.|-+||.|..+++|++|++.||+..+.|++|.+.+..
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 333444 89999998775432 23346889999999999999999999999999999999875
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.24 E-value=0.00024 Score=60.53 Aligned_cols=75 Identities=21% Similarity=0.381 Sum_probs=64.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCc--eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH-hCCCccCCceEEEE
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGT--VVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTDFRGRTIIVR 276 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~-l~g~~~~g~~l~v~ 276 (284)
.-++||+||-|.+++++|.+.++..|. +.+++++.++.+|++||||+|-..+..+..+.++ |-.+.|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 366899999999999999999987764 7788889888899999999999999999999994 88888888665544
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.22 E-value=0.00036 Score=61.06 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeec---CC--CCCc--------ceEEEEEeCCHHHHHHHHHhC
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD---RK--GQTT--------RVFGFISFSSDAERDAALSLN 264 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~---~~--~~~~--------~g~afV~f~~~~~A~~a~~l~ 264 (284)
+.++|.+.|||.+-.-+.|.++|..+|.|+.|+|+.- .+ .+.+ +-+|+|+|...+.|.+|.++.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 5699999999999999999999999999999999876 22 2333 345899999999999999644
No 171
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0012 Score=59.14 Aligned_cols=69 Identities=26% Similarity=0.418 Sum_probs=61.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhc-cCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHH
Q 023297 92 EPRSRARPCELYVCNLPRSFDISELLEMFK-PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160 (284)
Q Consensus 92 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 160 (284)
.....+..+|||||+||.-++-++|..+|+ -||.|..+-|=.|++-+-.+|-|=|+|.+..+-.+||..
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 335566789999999999999999999998 699999999988888888999999999999999999953
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.06 E-value=0.0024 Score=45.52 Aligned_cols=77 Identities=25% Similarity=0.245 Sum_probs=51.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEE-EEeCC------CCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcee
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNP------ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~-~~~~~------~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (284)
.+-|.|-+.|+. ....|.+.|++||.|.+.. +.++. ..........|+|.++.+|.+|| ..||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 366888899988 4467778899999998764 10000 00113457899999999999999 889999988654
Q ss_pred -EEEEcc
Q 023297 172 -RVRFSI 177 (284)
Q Consensus 172 -~v~~~~ 177 (284)
-|.++.
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 466663
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.02 E-value=0.00052 Score=62.42 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=62.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhc-cCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC---CCceeEE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFK-PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV---GGREMRV 173 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~l~v 173 (284)
..+.|||.||-.-.|.-+|+.++. .+|.|++.||=. -+..|||.|.+.++|...+.+|+|..| +++.|.+
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 468899999999999999999998 566777776522 356799999999999999999999988 5788888
Q ss_pred EEcc
Q 023297 174 RFSI 177 (284)
Q Consensus 174 ~~~~ 177 (284)
.|..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 8864
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.01 E-value=0.0011 Score=58.01 Aligned_cols=76 Identities=20% Similarity=0.378 Sum_probs=60.3
Q ss_pred ccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeC---CCC--CCc--------ccEEEEEeCCHHHHHH
Q 023297 90 VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN---PET--GIS--------RGCGYLTMGSINSAKN 156 (284)
Q Consensus 90 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~---~~~--~~~--------~g~afv~f~~~~~a~~ 156 (284)
.....++...++|.+-|||.+-.-+-|.++|..+|.|..|+|..- +.+ +.. +-+|+|+|...+.|.+
T Consensus 222 p~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 222 PEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred CCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 334445567899999999999888999999999999999999654 222 222 3468999999999999
Q ss_pred HHHHhCCCC
Q 023297 157 AIIALDGSD 165 (284)
Q Consensus 157 a~~~l~~~~ 165 (284)
|.+.|+...
T Consensus 302 A~e~~~~e~ 310 (484)
T KOG1855|consen 302 ARELLNPEQ 310 (484)
T ss_pred HHHhhchhh
Confidence 998875443
No 175
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.88 E-value=0.0029 Score=52.85 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=51.8
Q ss_pred HHHHHhhccCCceEEEEEEeCCCCCCcc-cEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 114 SELLEMFKPFGTVLSVEVSRNPETGISR-GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 114 ~~l~~~f~~~G~i~~~~~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
+++++-.++||.|..|-|...+.--... --.||+|...++|.+|+-.|||..|+||.++.++..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4567788999999999887764332222 237999999999999999999999999998888764
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.86 E-value=0.0036 Score=47.38 Aligned_cols=56 Identities=32% Similarity=0.523 Sum_probs=45.4
Q ss_pred HHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 115 ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 115 ~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
+|.+.|..||.+.=+++.-+ --+|+|.+-++|.+|+ .++|..+.|+.|+|....+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 57788899999887777654 3799999999999999 89999999999999987644
No 177
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.80 E-value=5.2e-05 Score=65.97 Aligned_cols=128 Identities=17% Similarity=0.251 Sum_probs=100.2
Q ss_pred CcccCCCcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcc
Q 023297 43 LSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKP 122 (284)
Q Consensus 43 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 122 (284)
++.+....-..||+|+...++..+..+.+.++++....+...+.+.. .......+++-|+|+|+...++-|..++.+
T Consensus 27 ~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s---v~kkqrsrk~Qirnippql~wevld~Ll~q 103 (584)
T KOG2193|consen 27 IPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS---VPKKQRSRKIQIRNIPPQLQWEVLDSLLAQ 103 (584)
T ss_pred CCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch---hhHHHHhhhhhHhcCCHHHHHHHHHHHHhc
Confidence 33444455578999999999999999999999998776665543211 223334578999999999999999999999
Q ss_pred CCceEEEEEEe-CCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 123 FGTVLSVEVSR-NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 123 ~G~i~~~~~~~-~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
||.++.|.... +.. .-..-|+|...+.+..||..|+|..+....+.+.|-.
T Consensus 104 yg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 104 YGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred cCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 99999887643 222 2234578999999999999999999999999998854
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.70 E-value=0.0007 Score=55.49 Aligned_cols=61 Identities=25% Similarity=0.405 Sum_probs=49.7
Q ss_pred HHHHHhhc-cCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 217 EDLRNHFG-RFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 217 ~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
++|...|+ +||+|+.+.|..+. .-.-+|-++|.|...++|.+|+ .|||..|.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 44555555 89999999887664 3345777999999999999999 69999999999988764
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.62 E-value=0.013 Score=37.66 Aligned_cols=54 Identities=15% Similarity=0.317 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccC----CceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPF----GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 161 (284)
...|+|.|+. +++.+||+.+|..| + ...|..+-|. -|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4689999985 48889999999998 4 3467777663 4899999999999999654
No 180
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.48 E-value=0.0057 Score=58.48 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=83.7
Q ss_pred CcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEE
Q 023297 52 PAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131 (284)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~ 131 (284)
...|+|+.+..-..+..+.-++.+.....+....--.. ......+.+++++|..++....|...|..||.|..|.+
T Consensus 412 esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~----~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy 487 (975)
T KOG0112|consen 412 ESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ----PKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY 487 (975)
T ss_pred ccchhhhhhhccccCcccchhhcCCccccCcccccccc----cccccceeeccCCCCCCChHHHHHHHhhccCcceeeec
Confidence 34556665555544555555555444433332221110 03445688999999999999999999999999998776
Q ss_pred EeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC--ceeEEEEccc
Q 023297 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFSID 178 (284)
Q Consensus 132 ~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~ 178 (284)
-- | .-||||.|++...+..|++.|-|..++| +.|+|.++..
T Consensus 488 ~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 488 RH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred cc----C--CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 33 2 3589999999999999999999999974 7799988863
No 181
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.48 E-value=0.025 Score=38.45 Aligned_cols=55 Identities=18% Similarity=0.462 Sum_probs=41.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (284)
....+|. .|......||.++|+.||.|. |..+-| .-|||...+.+.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 3566776 999999999999999999984 444443 259999999999999998775
No 182
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.47 E-value=0.005 Score=53.50 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=65.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCC---CCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEec
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG---QTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a 278 (284)
...|.|.||...++.++++.+|...|.|..+.|+..... ....-.|||.|.|...+..|..|.++.|-|+.|.|-.+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 347999999999999999999999999999999874322 23345699999999999999999999988888877655
Q ss_pred c
Q 023297 279 V 279 (284)
Q Consensus 279 ~ 279 (284)
.
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 4
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.34 E-value=0.003 Score=57.62 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhc-cCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCcc---CCceEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFG-RFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF---RGRTII 274 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~---~g~~l~ 274 (284)
...+.|+|.||-.-.|.-+|+++++ ..|.|+.. ++|+. +..|||.|.+.++|.+.+ +|||..+ +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 4568899999999999999999998 56667776 33322 235999999999999999 7999977 678888
Q ss_pred EEeccC
Q 023297 275 VREGVD 280 (284)
Q Consensus 275 v~~a~~ 280 (284)
+.|+..
T Consensus 516 adf~~~ 521 (718)
T KOG2416|consen 516 ADFVRA 521 (718)
T ss_pred eeecch
Confidence 888753
No 184
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.19 E-value=0.0024 Score=54.50 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=62.6
Q ss_pred CeEEEcCCCCCCCHHHHH---HhhccCCceEEEEEEeCCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 100 CELYVCNLPRSFDISELL---EMFKPFGTVLSVEVSRNPE----TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
+-+||-+|+.....+++. ++|.+||.|..+.+..+.. .+.+ .-+||+|...++|..||...+|...+|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 568999999987665543 6899999999998877652 1222 2389999999999999999999999999988
Q ss_pred EEEcccC
Q 023297 173 VRFSIDM 179 (284)
Q Consensus 173 v~~~~~~ 179 (284)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7776543
No 185
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.12 E-value=0.0075 Score=47.88 Aligned_cols=70 Identities=11% Similarity=0.124 Sum_probs=46.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhcc-CCce---EEEEEEeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKP-FGTV---LSVEVSRNPET--GISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i---~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (284)
...+|.|++||+.+|++++.+.+.. ++.. ..+.-...... .....-|||.|.+.+++......++|+.|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4478999999999999999998887 6665 23332222221 112345899999999999999999998773
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.00 E-value=0.12 Score=37.48 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=48.4
Q ss_pred CeEEEcCCCC-CCCHHHHHHhhccCC-ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 023297 100 CELYVCNLPR-SFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168 (284)
Q Consensus 100 ~~l~v~nl~~-~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (284)
..|.+=-.|. -++-++|..+.+.+- .|..++|++|.. .++=.+.+.|.+.++|....+.+||+.+.-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444444 455566766666554 477899988732 356678999999999999999999999853
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.97 E-value=0.13 Score=37.40 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=50.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccC-CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRF-GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
...+.+...|+-++-++|..+.+.+ ..|..++|+++.. ..+-.+++.|.+.+.|..-. .+||+.|..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3445666667777778887776666 3588899998743 34556899999999999999 799998853
No 188
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.93 E-value=0.041 Score=35.36 Aligned_cols=52 Identities=13% Similarity=0.325 Sum_probs=43.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccC---CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRF---GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 261 (284)
+..|+|++++ .++-++|+.+|..| ....+|..+-|.. |=|.|.+.+.|.+|+
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-------cNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-------CNVVFKDEETAARAL 59 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc-------EEEEECCHHHHHHHH
Confidence 4679999986 58889999999988 2356788887752 889999999999998
No 189
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.90 E-value=0.011 Score=48.53 Aligned_cols=62 Identities=23% Similarity=0.306 Sum_probs=56.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (284)
..|||.||..-++.+.+..-|+.||+|..-.+..| +.++..|-++|.|...-.|.+|...+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 57999999999999999999999999998777777 458899999999999999999998774
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.83 E-value=0.056 Score=40.58 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=56.9
Q ss_pred CCCCCeEEEcCCCCCCCH-HH---HHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcee
Q 023297 96 RARPCELYVCNLPRSFDI-SE---LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~-~~---l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (284)
++.-.+|.|+=|..++.. +| +...++.||+|.++.+.- +.-|.|.|.+..+|-+|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 444578889877777643 34 556678999999988753 34599999999999999988776 6678888
Q ss_pred EEEEcc
Q 023297 172 RVRFSI 177 (284)
Q Consensus 172 ~v~~~~ 177 (284)
.+.|..
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888865
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.77 E-value=0.025 Score=51.42 Aligned_cols=81 Identities=25% Similarity=0.360 Sum_probs=60.2
Q ss_pred CCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhcc--CCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC-
Q 023297 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKP--FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG- 163 (284)
Q Consensus 87 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~- 163 (284)
+++.+.-+....-|.|.++-||..+-.++++.+|+. |-++.+|.+-.+. + =||+|++..+|+.|++.|..
T Consensus 163 DekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylree 235 (684)
T KOG2591|consen 163 DEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREE 235 (684)
T ss_pred ccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHH
Confidence 334444455556688899999999999999999964 7778888886652 2 58999999999999987753
Q ss_pred -CCCCCceeEEE
Q 023297 164 -SDVGGREMRVR 174 (284)
Q Consensus 164 -~~~~g~~l~v~ 174 (284)
+.|.|+.|...
T Consensus 236 vk~fqgKpImAR 247 (684)
T KOG2591|consen 236 VKTFQGKPIMAR 247 (684)
T ss_pred HHhhcCcchhhh
Confidence 34555555443
No 192
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.53 E-value=0.014 Score=54.14 Aligned_cols=121 Identities=9% Similarity=0.026 Sum_probs=80.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
.++..+|||+|+...+..+-++.++..+|-|.+++... |||+.|..+....+|+..++-..++|..+.+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34457899999999999999999999999998876543 899999999999999999999999998888766
Q ss_pred cccCC-cccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhcc
Q 023297 176 SIDMN-SRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGR 225 (284)
Q Consensus 176 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 225 (284)
-.... ...+...........-......+..+|.|++..+.+......+.-
T Consensus 108 d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~i 158 (668)
T KOG2253|consen 108 DEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQI 158 (668)
T ss_pred hhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhc
Confidence 32111 000000000000000011111355677777777666665555543
No 193
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.52 E-value=0.0071 Score=53.84 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=56.7
Q ss_pred EcCCCCCC-CHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 207 VGNLSWAV-KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 207 v~nl~~~~-~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
+.-.+... +.++|...|.+||.|..|.+-.... .|.|+|.+..+|-.|-..++..|+|+.|+|.|..+
T Consensus 377 lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 377 LEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 33334433 4688999999999999998866533 38999999999999999999999999999999887
No 194
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.27 E-value=0.052 Score=40.76 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCCC----CCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 200 ESPHKLYVGNLSW----AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 200 ~~~~~l~v~nl~~----~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
.+..+|.|+=|.. .-+...+...+..||.|..|...-.+ -|.|.|.|..+|-.|+ ++.. ...|..++
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 3456777754433 33445566667889999999875332 3999999999999999 5665 77899999
Q ss_pred EEecc
Q 023297 275 VREGV 279 (284)
Q Consensus 275 v~~a~ 279 (284)
+.|..
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 99865
No 195
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.94 E-value=0.25 Score=44.11 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=58.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (284)
++.|+|-.+|..++--||..|...+- .|.++++++|.. .++=...|.|.+.++|...++.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68999999999999999999987664 488999999633 234457899999999999999999999864
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.94 E-value=0.013 Score=50.18 Aligned_cols=81 Identities=17% Similarity=0.326 Sum_probs=61.6
Q ss_pred cEEEEcCCCCCCCHHHHH---HhhccCCceEEEEEeecCC--CCC-cceEEEEEeCCHHHHHHHH-HhCCCccCCceEEE
Q 023297 203 HKLYVGNLSWAVKPEDLR---NHFGRFGTVVSARVLHDRK--GQT-TRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~v~i~~~~~--~~~-~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v 275 (284)
+-+||-+|+.....+.+. ++|.+||.|..|.+..+.. .+. ..--++|+|...++|..|+ ..+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 446788888776555543 5788999999999988762 111 1112699999999999999 69999999999998
Q ss_pred EeccCCCC
Q 023297 276 REGVDRTE 283 (284)
Q Consensus 276 ~~a~~k~~ 283 (284)
.++..+-.
T Consensus 158 ~~gttkyc 165 (327)
T KOG2068|consen 158 SLGTTKYC 165 (327)
T ss_pred hhCCCcch
Confidence 88877643
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.85 E-value=0.1 Score=34.03 Aligned_cols=55 Identities=13% Similarity=0.255 Sum_probs=42.7
Q ss_pred CCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 110 SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 110 ~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
.++-++++..|+.|+-. . |..| . .|| ||.|.+.++|++|....+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d-~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDD-R----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEec-C----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46789999999999643 3 2334 2 355 89999999999999999998887776654
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.73 E-value=0.084 Score=44.59 Aligned_cols=72 Identities=28% Similarity=0.249 Sum_probs=55.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCce-EEEEeccCC
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRT-IIVREGVDR 281 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~-l~v~~a~~k 281 (284)
.=+.|.+++..- -..|-.+|.+||.|.+..... +|. +-+|.|.+..+|.+||..||+.|+|.. |-|+.+.+|
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~---ngN---wMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS---NGN---WMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC---CCc---eEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 447788888653 457788999999988775542 222 789999999999999999999998765 556665554
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.67 E-value=0.059 Score=42.99 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=44.7
Q ss_pred CCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhC--CCccCCceEEEEeccC
Q 023297 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN--GTDFRGRTIIVREGVD 280 (284)
Q Consensus 214 ~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~--g~~~~g~~l~v~~a~~ 280 (284)
-..+.|+++|..|+.+.....++.-. -..|.|.+.+.|..|. .|+ +..+.|..++|-|+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34588999999999888887776542 3899999999999999 689 9999999999998853
No 200
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.33 E-value=0.21 Score=34.05 Aligned_cols=53 Identities=17% Similarity=0.366 Sum_probs=37.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhC
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN 264 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~ 264 (284)
...+|. +|..|...||.++|.+||.|. |..+-| + -|||...+.+.|..|+ .++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d--T-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND--T-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT--T-----EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC--C-----cEEEEeecHHHHHHHHHHhc
Confidence 334555 999999999999999999854 444433 3 3999999999999998 453
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.30 E-value=0.026 Score=50.36 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=62.6
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 98 RPCELYVCNLPRSF-DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 98 ~~~~l~v~nl~~~~-t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
+.+.|-+.-.|+.+ +.++|..-|.+||.|..|.+-... -.|.|+|.+..+|-+|. ...+..|++|.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 44667777778876 568999999999999999885542 25899999999998888 78999999999999998
Q ss_pred ccC
Q 023297 177 IDM 179 (284)
Q Consensus 177 ~~~ 179 (284)
.+.
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 764
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.19 E-value=3.1 Score=35.34 Aligned_cols=170 Identities=15% Similarity=0.157 Sum_probs=103.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCC-------CCCCcccEEEEEeCCHHHHHHHH----HHhCC--C
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP-------ETGISRGCGYLTMGSINSAKNAI----IALDG--S 164 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~-------~~~~~~g~afv~f~~~~~a~~a~----~~l~~--~ 164 (284)
..|.|.+.|+..+++--.+...|-+||+|++|+++.+. ...+......+.|-+.+.+...+ +.|.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999998899999999999999999764 11233456889999998876544 23332 3
Q ss_pred CCCCceeEEEEcccC-Ccccc-cccccCC-----CCC--CccccCCCcEEEEcCCCCCC-CHHHHHHhh---ccCC----
Q 023297 165 DVGGREMRVRFSIDM-NSRTR-NAEALIS-----PPK--KIFVYESPHKLYVGNLSWAV-KPEDLRNHF---GRFG---- 227 (284)
Q Consensus 165 ~~~g~~l~v~~~~~~-~~~~~-~~~~~~~-----~~~--~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f---~~~G---- 227 (284)
.+.-..|.+.+..-. ..... +.++.+. ... ........+.|.|.=- ..+ .++-+.+.+ ..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 455677777765421 11110 1111111 111 1222345567777633 333 333333332 2222
Q ss_pred ceEEEEEeecCC--CCCcceEEEEEeCCHHHHHHHH---HhCCCcc
Q 023297 228 TVVSARVLHDRK--GQTTRVFGFISFSSDAERDAAL---SLNGTDF 268 (284)
Q Consensus 228 ~v~~v~i~~~~~--~~~~~g~afV~f~~~~~A~~a~---~l~g~~~ 268 (284)
.++.|.++-..+ ..-++.||+++|-+..-|...+ ..++...
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~ 218 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKL 218 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhccccc
Confidence 477787775433 2345679999999999999998 3455544
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.02 E-value=0.13 Score=35.64 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=46.5
Q ss_pred EEEEeCCHHHHHHHHHHhCCCC--CCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHH
Q 023297 144 GYLTMGSINSAKNAIIALDGSD--VGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221 (284)
Q Consensus 144 afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 221 (284)
|.|+|.++.-|.+.++ +..+. +++..+.|....-....-. .-+.......++|.|.|+|...++++|++
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~--------k~qv~~~vs~rtVlvsgip~~l~ee~l~D 71 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQ--------KFQVFSGVSKRTVLVSGIPDVLDEEELRD 71 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCce--------EEEEEEcccCCEEEEeCCCCCCChhhhee
Confidence 6899999999999994 33332 4566666654421111111 11112234568899999999999999998
Q ss_pred hhc
Q 023297 222 HFG 224 (284)
Q Consensus 222 ~f~ 224 (284)
.++
T Consensus 72 ~Le 74 (88)
T PF07292_consen 72 KLE 74 (88)
T ss_pred eEE
Confidence 754
No 204
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.85 E-value=0.14 Score=40.82 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=46.0
Q ss_pred CHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCCCCceeEEEEcccC
Q 023297 112 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD--GSDVGGREMRVRFSIDM 179 (284)
Q Consensus 112 t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~ 179 (284)
..+.|+++|..++.+..+...+. -+-..|.|.+.+.|.+|...|+ +..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999888777654 3458999999999999999999 89999999999988533
No 205
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.68 E-value=0.29 Score=44.84 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=45.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcc--CCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGR--FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 261 (284)
..|.+.|+-||..+-.|+++.+|.. +-.+.+|.+-.+.. =||+|++..+|+.|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAy 229 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAY 229 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHH
Confidence 4477899999999999999999964 67788888876642 599999999999887
No 206
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.91 E-value=0.14 Score=40.65 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=44.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhcc-CCce---EEEEEeecCCC--CCcceEEEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGR-FGTV---VSARVLHDRKG--QTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~-~G~v---~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
..+|.|++||..++++++.+.+.+ ++.- ..+.-...... ...-.-|+|.|.+.+++.... .++|..|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 468999999999999999998877 5544 23331122211 112345899999999988888 699987743
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.53 E-value=0.61 Score=30.45 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=43.3
Q ss_pred CCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEE
Q 023297 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIV 275 (284)
Q Consensus 213 ~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v 275 (284)
.++-++++..+..|+- .+|..++ +| -||.|.+..+|.+|. ..||+.+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5778899999999954 3444454 43 599999999999999 79999998888765
No 208
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.40 E-value=0.079 Score=50.73 Aligned_cols=70 Identities=26% Similarity=0.299 Sum_probs=59.5
Q ss_pred EEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCcc--CCceEEEEeccC
Q 023297 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF--RGRTIIVREGVD 280 (284)
Q Consensus 205 l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~--~g~~l~v~~a~~ 280 (284)
.++.|.+-..+-..|-.+|..||.|...+.+++-+ .|.|+|...+.|..|+ +++|+++ -|-+.+|.+|+.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 44455555677888999999999999999998865 4999999999999999 7999976 688899999874
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.02 E-value=0.86 Score=30.44 Aligned_cols=58 Identities=14% Similarity=0.316 Sum_probs=35.3
Q ss_pred CCCHHHHHHhhccCC-----ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 110 SFDISELLEMFKPFG-----TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 110 ~~t~~~l~~~f~~~G-----~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.++..+|..++...+ .|-.|.+..+ |.||+-.. +.|..+++.|++..+.|++++|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 478888888887664 3557777554 78988775 5789999999999999999999864
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.98 E-value=0.49 Score=42.36 Aligned_cols=67 Identities=21% Similarity=0.359 Sum_probs=56.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccC-CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRF-GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
...|+|-.+|..++-.||..++..+ -.|.+++|++|. -..+=..+|.|.+.++|.... ++||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 5779999999999999999999876 459999999963 223445799999999999999 799998854
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.90 E-value=0.32 Score=46.79 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=63.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC--CCceeEEEEcc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV--GGREMRVRFSI 177 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~ 177 (284)
.+.++.|.+-..+...|..++.+||.|.+.+..++- ..|.|+|.+.+.|..|+++|+|+.+ .|-+.+|.++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 456777888888899999999999999999988873 3699999999999999999999986 48888888876
Q ss_pred c
Q 023297 178 D 178 (284)
Q Consensus 178 ~ 178 (284)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 3
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.56 E-value=0.77 Score=39.00 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=55.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCce-eEEEEcc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE-MRVRFSI 177 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~-l~v~~~~ 177 (284)
+.=|-|-+.|+.-. .-|..+|++||.|.+.... .+-.+-+|.|.+.-+|.+|| ..+|..|+|.. |-|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 34566778877654 4566789999999775443 23458899999999999999 78999998654 6677776
Q ss_pred cCCc
Q 023297 178 DMNS 181 (284)
Q Consensus 178 ~~~~ 181 (284)
++..
T Consensus 269 Dksv 272 (350)
T KOG4285|consen 269 DKSV 272 (350)
T ss_pred CHHH
Confidence 5543
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.78 E-value=2.5 Score=28.16 Aligned_cols=57 Identities=19% Similarity=0.488 Sum_probs=32.2
Q ss_pred CCCHHHHHHhhccC-C----ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 213 AVKPEDLRNHFGRF-G----TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 213 ~~~~~~l~~~f~~~-G----~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.++..+|..++... | .|-+|.|..+ |+||+-... .|..++ .|++..+.|+.|+|..|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45666777776544 3 3777887654 689998776 566677 79999999999999865
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=80.56 E-value=1.3 Score=41.57 Aligned_cols=69 Identities=23% Similarity=0.304 Sum_probs=58.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
.+..++||+|+-..+..+-++.+...+|.|..+.... |||.+|..+..+..|+ .++-..++|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4557899999999999999999999999987775543 7999999999999999 6888888887766544
No 215
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=79.67 E-value=3.2 Score=31.70 Aligned_cols=118 Identities=9% Similarity=0.009 Sum_probs=74.6
Q ss_pred EEEcCCC--CCCCHHHHHHhhcc-CCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 102 LYVCNLP--RSFDISELLEMFKP-FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 102 l~v~nl~--~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
..|+.+. ...+-..|...+.+ ++....+.+..- ..++..+.|.+++++.+++ ......++|..+.+....+
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl-~~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVL-KGGPWNFNGHFLILQRWSP 91 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEE-ecccccccccchhhhhhcc
Confidence 4455442 23556666666543 344334444332 2468899999999999998 4555667788777776653
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCC-CCHHHHHHhhccCCceEEEEEee
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA-VKPEDLRNHFGRFGTVVSARVLH 236 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~v~i~~ 236 (284)
...... ........=|.|.|||.. ++++-++.+.+.+|.+..+....
T Consensus 92 ~~~~~~-----------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 92 DFNPSE-----------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred cccccc-----------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 221111 001112234788899976 78888999999999988886643
No 216
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=73.36 E-value=0.5 Score=43.38 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=58.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR 169 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (284)
...+.||+.|+++.++-++|..+++.+--+..+.+.....-.....+++|+|+---....|+..||+..+...
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 3467899999999999999999999987777766655444455667899999988888888888888776433
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.74 E-value=19 Score=33.72 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=59.0
Q ss_pred ccCCCcEEEEcCCCCC-CCHHHHHHhhccC----CceEEEEEeecCC----------CCC--------------------
Q 023297 198 VYESPHKLYVGNLSWA-VKPEDLRNHFGRF----GTVVSARVLHDRK----------GQT-------------------- 242 (284)
Q Consensus 198 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~----G~v~~v~i~~~~~----------~~~-------------------- 242 (284)
.....++|-|-|+.|+ +...+|.-+|..| |.|.+|.|.+..- .|.
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3456788999999875 7788999888754 5799998865421 111
Q ss_pred -----------------cceEEEEEeCCHHHHHHHH-HhCCCccCC--ceEEEEe
Q 023297 243 -----------------TRVFGFISFSSDAERDAAL-SLNGTDFRG--RTIIVRE 277 (284)
Q Consensus 243 -----------------~~g~afV~f~~~~~A~~a~-~l~g~~~~g--~~l~v~~ 277 (284)
.--||.|+|.+...|...- +.+|.+|.. ..|.++|
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1136999999999999998 799999964 5555555
No 218
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=70.61 E-value=9.6 Score=33.26 Aligned_cols=56 Identities=27% Similarity=0.228 Sum_probs=39.1
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhh
Q 023297 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHF 223 (284)
Q Consensus 144 afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 223 (284)
|||+|++..+|..|.+.+....- +.+++..+. .++.|...||.....+..+|..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP-----------------------eP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP-----------------------EPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC-----------------------CcccccccccCCChHHHHHHHHH
Confidence 79999999999999975544332 444565552 23558888987777776666555
Q ss_pred c
Q 023297 224 G 224 (284)
Q Consensus 224 ~ 224 (284)
.
T Consensus 56 ~ 56 (325)
T PF02714_consen 56 V 56 (325)
T ss_pred H
Confidence 4
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.03 E-value=30 Score=32.45 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=59.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhccC----CceEEEEEEeCC----------CCCC---------------------
Q 023297 96 RARPCELYVCNLPRS-FDISELLEMFKPF----GTVLSVEVSRNP----------ETGI--------------------- 139 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~----G~i~~~~~~~~~----------~~~~--------------------- 139 (284)
....++|-|.||.++ +.-.||..+|..| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445689999999996 7888998888655 578888875411 1111
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHHhCCCCCC--CceeEEEEc
Q 023297 140 ----------------SRGCGYLTMGSINSAKNAIIALDGSDVG--GREMRVRFS 176 (284)
Q Consensus 140 ----------------~~g~afv~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~ 176 (284)
..=||.|+|.+.+.|.+.++..+|..+. +..|-+.+-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0127889999999999999999999997 445555543
No 220
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.66 E-value=12 Score=27.52 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=27.3
Q ss_pred CCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCC-HHHHHHHHH
Q 023297 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALS 262 (284)
Q Consensus 214 ~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~a~~ 262 (284)
.+.++|++.|..|..++ ++.+.+.. ...|+++|+|.. -.--..|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 45688999999997764 66666643 468899999965 444455553
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.13 E-value=18 Score=32.23 Aligned_cols=57 Identities=26% Similarity=0.352 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHh
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l 263 (284)
.-...|-|+++|.....+||-..|..|+. --+|.++-|. .||-.|.+...|..|+.|
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 45578999999999999999999999965 3445555443 499999999999999965
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=63.37 E-value=6.6 Score=30.98 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=54.3
Q ss_pred CeEEEcCCCCCCC-----HHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc-eeEE
Q 023297 100 CELYVCNLPRSFD-----ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR-EMRV 173 (284)
Q Consensus 100 ~~l~v~nl~~~~t-----~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~v 173 (284)
..+.+.+|+..+- .....++|.+|.+..-..+.+ +.+..-|.|.+.+.|..|...+++..+.|. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 5688888887642 223456777776655544443 345667899999999999999999999887 7777
Q ss_pred EEcccCC
Q 023297 174 RFSIDMN 180 (284)
Q Consensus 174 ~~~~~~~ 180 (284)
-++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7776443
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=60.33 E-value=17 Score=30.89 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=35.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHH
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~ 152 (284)
.-||++|||.++.-.||+..+.+.|-+ .+.|... .+.|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 559999999999999999999877643 3333332 25677999998754
No 224
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=59.58 E-value=15 Score=24.11 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=43.4
Q ss_pred HHHHHhhccCC-ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 114 SELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 114 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
.+|++-|++.| ++..+.-+...+++.....=+|+.....+... .|+-+.+.|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 57888888777766666677777766543333 456667788988888764
No 225
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.27 E-value=39 Score=30.25 Aligned_cols=56 Identities=21% Similarity=0.425 Sum_probs=45.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGT-VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 161 (284)
-.+.|-|-++|.....+||...|+.|+. --+|+++-| -.||..|.+...|..|+ .|
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaL-t~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEAL-TL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHh-hc
Confidence 3578999999999888899999999975 335555554 26999999999999999 44
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=56.80 E-value=12 Score=31.55 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=51.7
Q ss_pred cCCCcEEEEcCCCCC------------CCHHHHHHhhccCCceEEEEEeecC-----CCCCcc-----eEE---------
Q 023297 199 YESPHKLYVGNLSWA------------VKPEDLRNHFGRFGTVVSARVLHDR-----KGQTTR-----VFG--------- 247 (284)
Q Consensus 199 ~~~~~~l~v~nl~~~------------~~~~~l~~~f~~~G~v~~v~i~~~~-----~~~~~~-----g~a--------- 247 (284)
...+.+|++.++|-. -+++.|+..|+.||.|..|.|+.-. -+|+.. ||+
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 345678899888764 3678899999999999999886321 123332 332
Q ss_pred EEEeCCHHHHHHHH-HhCCCcc----CC----ceEEEEeccCC
Q 023297 248 FISFSSDAERDAAL-SLNGTDF----RG----RTIIVREGVDR 281 (284)
Q Consensus 248 fV~f~~~~~A~~a~-~l~g~~~----~g----~~l~v~~a~~k 281 (284)
+|.|-.-..-..|+ +|.|+.+ .| ..++|.|.+++
T Consensus 226 yvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 34444444455666 5666643 22 34666666554
No 227
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=56.49 E-value=18 Score=23.68 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHHHHhhccCC-ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 114 SELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 114 ~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
++|.+-|...| +|..+.-+....++.....-||+.+...+... .++=..+.++.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 46778888888 57788877776667777778888877655333 3455667888888887753
No 228
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=55.70 E-value=11 Score=31.85 Aligned_cols=73 Identities=22% Similarity=0.427 Sum_probs=47.4
Q ss_pred CCCCCCCeEEEcCCCCCC------------CHHHHHHhhccCCceEEEEEEe-----CCCCCCcc-----cEE-------
Q 023297 94 RSRARPCELYVCNLPRSF------------DISELLEMFKPFGTVLSVEVSR-----NPETGISR-----GCG------- 144 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~------------t~~~l~~~f~~~G~i~~~~~~~-----~~~~~~~~-----g~a------- 144 (284)
.+...+.+||+.+||-.+ +++-|+..|+.||.|..+.|+. ...+|+.. ||+
T Consensus 144 kpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlff 223 (445)
T KOG2891|consen 144 KPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFF 223 (445)
T ss_pred CCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhH
Confidence 344456789999998643 4677999999999999988753 22344443 443
Q ss_pred --EEEeCCHHHHHHHHHHhCCCCC
Q 023297 145 --YLTMGSINSAKNAIIALDGSDV 166 (284)
Q Consensus 145 --fv~f~~~~~a~~a~~~l~~~~~ 166 (284)
||+|.....-..|+..|.|..+
T Consensus 224 eayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 224 EAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHHHhHHHHHHHHhcchH
Confidence 3455444445566666766554
No 229
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=52.70 E-value=35 Score=22.34 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=44.8
Q ss_pred HHHHHhhccCCc-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccCCCC
Q 023297 217 EDLRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDRTE 283 (284)
Q Consensus 217 ~~l~~~f~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~k~~ 283 (284)
++|.+.|...|. |..+.-+....++.+.-.-||+.+...+... .++=+.++|..|+|...+.+.+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~--i~~Ik~l~~~~V~vE~~~k~~~ 67 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE--IYKIKTLCGQRVKVERPRKRRE 67 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc--eeehHhhCCeEEEEecCCCCCC
Confidence 467777777664 7777777666566666677888877655222 2555678889999988776653
No 230
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=52.46 E-value=20 Score=28.34 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=38.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCC--CcccEEEEEeCCHHHHHHHHH
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG--ISRGCGYLTMGSINSAKNAII 159 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~ 159 (284)
..+++|.. +.+...++|.++-+ |.+..+.+.+. ..+ ..+|-.||+|.+.+.|..+++
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhh
Confidence 45778877 32333334444444 67888777554 223 578999999999999999884
No 231
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.07 E-value=3.7 Score=36.88 Aligned_cols=77 Identities=8% Similarity=-0.107 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
.+-|+..+|...++.++.-+|..||.|..+.+.+.-..|...-.+|++-.. ..+..||..+....+.|..+++..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 346788999999999999999999999988876654555566677887664 45677887777777888888887764
No 232
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=47.66 E-value=35 Score=29.27 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=54.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCC-------CCCcceEEEEEeCCHHHHHHHH-H----hCC--Cc
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK-------GQTTRVFGFISFSSDAERDAAL-S----LNG--TD 267 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~a~-~----l~g--~~ 267 (284)
.+.|.+.|+...++-..+...|-+||.|+.|.++.+.. ..+...-..+-|-+.+.+...- . |.- ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999998761 1122334788998888776443 1 211 23
Q ss_pred cCCceEEEEec
Q 023297 268 FRGRTIIVREG 278 (284)
Q Consensus 268 ~~g~~l~v~~a 278 (284)
+....|.++|.
T Consensus 95 L~S~~L~lsFV 105 (309)
T PF10567_consen 95 LKSESLTLSFV 105 (309)
T ss_pred cCCcceeEEEE
Confidence 45555665554
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=47.23 E-value=20 Score=26.24 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=28.2
Q ss_pred eEEEcCCCCC---------CCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHH
Q 023297 101 ELYVCNLPRS---------FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154 (284)
Q Consensus 101 ~l~v~nl~~~---------~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a 154 (284)
++.|-|++.. ++.+.|++.|+.|.++. ++...+. ..+.|++.|.|.+.-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHH
Confidence 4556666543 34578999999998874 5555553 35789999999876553
No 234
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=45.53 E-value=14 Score=25.58 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhh
Q 023297 98 RPCELYVCNLPRSFDISELLEMF 120 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f 120 (284)
..++|.|.|||..+.+++|++.+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 45899999999999999999754
No 235
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=43.84 E-value=50 Score=21.19 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=16.0
Q ss_pred HHHHHhhccCCceEEEEEE
Q 023297 114 SELLEMFKPFGTVLSVEVS 132 (284)
Q Consensus 114 ~~l~~~f~~~G~i~~~~~~ 132 (284)
++|+++|+..|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999876653
No 236
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=43.75 E-value=26 Score=31.15 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=46.8
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEEeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGT-VLSVEVSRNPET--GISRGCGYLTMGSINSAKNAIIALDGSDV 166 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (284)
..|.|.+||+.+++.++.+....+-. +....+...... ..-.+.+||.|...++...-...++|+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 67899999999999998887776543 222222211111 11246789999999998888888888765
No 237
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=43.21 E-value=41 Score=26.71 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=46.7
Q ss_pred cEEEEcCCCCCCC-----HHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCc-eEEE
Q 023297 203 HKLYVGNLSWAVK-----PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR-TIIV 275 (284)
Q Consensus 203 ~~l~v~nl~~~~~-----~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~-~l~v 275 (284)
..+.+.+++..+. ......+|.+|....-..+++. .+...|-|.+++.|..|. .+++..|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 3455555554432 2334455555554444444433 334789999999999999 8999999888 7777
Q ss_pred EeccC
Q 023297 276 REGVD 280 (284)
Q Consensus 276 ~~a~~ 280 (284)
-++.+
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 77654
No 238
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=42.56 E-value=85 Score=21.12 Aligned_cols=55 Identities=7% Similarity=0.132 Sum_probs=39.8
Q ss_pred EEEEcCCCCCCCHHHHHHhhcc-CC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 023297 204 KLYVGNLSWAVKPEDLRNHFGR-FG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (284)
Q Consensus 204 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 261 (284)
+-|+..++...+..+|++.++. || .|.+|..+.-.. + .--|||++...+.|...-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 3567778999999999999986 55 477777765542 1 123999998877776554
No 239
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=42.18 E-value=49 Score=21.75 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=43.0
Q ss_pred HHHHHhhccCCc-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccCCC
Q 023297 217 EDLRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 217 ~~l~~~f~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~k~ 282 (284)
.+|.+.|+.+|- +..+.-+....++.+.-.-+|+.....+-.. -++=+.++|.+|.|....-+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~--Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE--ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc--eEeehhhCCeeEEEecCcccC
Confidence 467778887774 7788777776666666667787765532222 356667888998887765443
No 240
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=39.82 E-value=15 Score=32.73 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=50.7
Q ss_pred CCCeEEEcCCCCCCCHH--------HHHHhhcc--CCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH
Q 023297 98 RPCELYVCNLPRSFDIS--------ELLEMFKP--FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~--------~l~~~f~~--~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 158 (284)
..+.+|+.+.....+.+ ++...|.. .+++..+...++.....++|.-|++|+..+.+++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 34678888888776555 89999998 678888888888767889999999999999999877
No 241
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=37.17 E-value=5 Score=37.14 Aligned_cols=71 Identities=14% Similarity=0.145 Sum_probs=50.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
...|.+++.|++..++..+|..+|..+-.+.++.+..+.....-.-+++|+|+---....|. +||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 34588999999999999999999999877776665444322223335789997665555555 666665543
No 242
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.99 E-value=7.2 Score=35.11 Aligned_cols=75 Identities=5% Similarity=-0.153 Sum_probs=55.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 204 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
..++..++...+++++.-+|+.||.|..+.+.+.-+.+...-.+||+.... .+..++ .+.-..+.|..+++..+.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~~-~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKKA-NGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeecc-CcccccCHHHHhhhhhhhhhhhcCc
Confidence 356778899999999999999999999998888777777777788887654 345555 455555556666665543
No 243
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.88 E-value=1.2e+02 Score=20.74 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=40.2
Q ss_pred EEEcCCCCCCCHHHHHHhhcc-CC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 023297 205 LYVGNLSWAVKPEDLRNHFGR-FG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (284)
Q Consensus 205 l~v~nl~~~~~~~~l~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 261 (284)
-|...++...+..+|++.++. || .|.+|..+.-.. + .--|+|++...+.|....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHH
Confidence 566668889999999999986 56 488887766542 2 123999999888887665
No 244
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=36.37 E-value=1.4e+02 Score=25.67 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=34.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCH
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 254 (284)
...|+++||+.++.-.+|+..+.+-|. .-..|...- ..|-||+.|-+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswkg----~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWKG----HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCC-CceeEeeec----CCcceeEecCCc
Confidence 356999999999999999999987654 223333222 345699999664
No 245
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=33.68 E-value=1.2e+02 Score=22.27 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCCHHHHHHhhcc-C----CceEEEEEEeCCCCCCcccEEEEEeCCHHHHHH
Q 023297 110 SFDISELLEMFKP-F----GTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156 (284)
Q Consensus 110 ~~t~~~l~~~f~~-~----G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~ 156 (284)
.++.++|++-+.+ | ..|.-..+...-..|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4677888776643 2 22334444445456788899887 666666554
No 246
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=33.39 E-value=65 Score=21.14 Aligned_cols=29 Identities=21% Similarity=0.068 Sum_probs=23.4
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCCCCCce
Q 023297 142 GCGYLTMGSINSAKNAIIALDGSDVGGRE 170 (284)
Q Consensus 142 g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 170 (284)
.+++|.|.+..+|.+|-+.|....+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 36899999999999999988876664443
No 247
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=33.18 E-value=88 Score=30.01 Aligned_cols=73 Identities=11% Similarity=0.093 Sum_probs=59.8
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 101 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
+||+.|-...-+..-+...+...+.+...+++.....+...+-++++|.....+..|. .|.++.+....+.+.
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks~ 585 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKSH 585 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceecc
Confidence 8899888888888888889999999998888888788888888999999999987776 777777765555443
No 248
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=29.96 E-value=27 Score=31.21 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=48.3
Q ss_pred CcEEEEcCCCCCCCHH--------HHHHhhcc--CCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 023297 202 PHKLYVGNLSWAVKPE--------DLRNHFGR--FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~--------~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 261 (284)
.+.+|+.+++.....+ ++...|.. ++....+...++......+|-.|++|.....+++++
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4667888877765544 89999988 567777887777656677888999999999999998
No 249
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=29.58 E-value=1.1e+02 Score=21.49 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=20.0
Q ss_pred ceEEEEEeecCCCCCcceEEEEEeCC
Q 023297 228 TVVSARVLHDRKGQTTRVFGFISFSS 253 (284)
Q Consensus 228 ~v~~v~i~~~~~~~~~~g~afV~f~~ 253 (284)
+|++|+|.+-...|+-+|||=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46778877766667788888888877
No 250
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=29.09 E-value=1.2e+02 Score=20.73 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=21.1
Q ss_pred ceEEEEEeecCCCCCcceEEEEEeCC
Q 023297 228 TVVSARVLHDRKGQTTRVFGFISFSS 253 (284)
Q Consensus 228 ~v~~v~i~~~~~~~~~~g~afV~f~~ 253 (284)
.|.+|+|..-...++-+|+|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46788888777678889999999987
No 251
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.71 E-value=85 Score=21.34 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCC
Q 023297 140 SRGCGYLTMGSINSAKNAIIALDG 163 (284)
Q Consensus 140 ~~g~afv~f~~~~~a~~a~~~l~~ 163 (284)
-+||-||+=.++.++..|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 689999999999999999965543
No 252
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=27.75 E-value=1.4e+02 Score=20.62 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=28.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~ 149 (284)
.-|||||++..+.+.-...+.+..+.- ++-++.... + ..||.|-+.-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~-n-eqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDN-N-EQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccC-C-CCCEEEEEeC
Confidence 469999998888765555444444332 333333322 2 7899998774
No 253
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=26.86 E-value=58 Score=29.59 Aligned_cols=13 Identities=8% Similarity=0.355 Sum_probs=8.8
Q ss_pred EEEEeCCHHHHHH
Q 023297 247 GFISFSSDAERDA 259 (284)
Q Consensus 247 afV~f~~~~~A~~ 259 (284)
-|+||.=+++-..
T Consensus 453 Dy~EfpvPEQfkt 465 (480)
T KOG2675|consen 453 DYVEFPVPEQFKT 465 (480)
T ss_pred CcccccChHHHhh
Confidence 3788887776443
No 254
>CHL00030 rpl23 ribosomal protein L23
Probab=25.20 E-value=2.2e+02 Score=19.94 Aligned_cols=35 Identities=11% Similarity=0.221 Sum_probs=26.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhcc-CC-ceEEEEEeecC
Q 023297 204 KLYVGNLSWAVKPEDLRNHFGR-FG-TVVSARVLHDR 238 (284)
Q Consensus 204 ~l~v~nl~~~~~~~~l~~~f~~-~G-~v~~v~i~~~~ 238 (284)
+-|+.-++...+..+|++.++. || .|..|..+.-.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 3567778999999999999986 55 37777766543
No 255
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.12 E-value=94 Score=26.37 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=25.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEE
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~ 132 (284)
....|+|||++++..-|..+++..-.+....++
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 456799999999999999998876555444444
No 256
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.47 E-value=1.3e+02 Score=28.08 Aligned_cols=60 Identities=15% Similarity=0.241 Sum_probs=45.3
Q ss_pred EEEcCCCCCCCH---HHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcee
Q 023297 102 LYVCNLPRSFDI---SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (284)
Q Consensus 102 l~v~nl~~~~t~---~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (284)
=+||||+.--.. ..+..+=++||+|-.+++-.. -.|.-.+.+.|+.|+ .-++..+.+|..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l-~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVL-VKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHH-HhCCccccCCCC
Confidence 368888775433 456666679999998887432 367888999999999 668888888876
No 257
>COG5584 Predicted small secreted protein [Function unknown]
Probab=24.11 E-value=1.6e+02 Score=20.79 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=25.2
Q ss_pred CCCCCCCHHHHHHhhccCCceEEEEEEeCCCC
Q 023297 106 NLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137 (284)
Q Consensus 106 nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~ 137 (284)
|++...-.+-+++.|+++|+|+.-+|...+..
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe~ 60 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPEV 60 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEeccc
Confidence 56666666778999999999998888766543
No 258
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=22.62 E-value=58 Score=18.38 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=9.8
Q ss_pred CCCHHHHHHhhccCC
Q 023297 213 AVKPEDLRNHFGRFG 227 (284)
Q Consensus 213 ~~~~~~l~~~f~~~G 227 (284)
++++++|++.|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 688999999998764
No 259
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=22.61 E-value=2.4e+02 Score=19.78 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=30.0
Q ss_pred CeEEEcCCCCCCCHHHH---HHhhccCCceEEEEE--EeCCCCCCcccEEEEEeC
Q 023297 100 CELYVCNLPRSFDISEL---LEMFKPFGTVLSVEV--SRNPETGISRGCGYLTMG 149 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l---~~~f~~~G~i~~~~~--~~~~~~~~~~g~afv~f~ 149 (284)
...|+.|||.++.+.++ +..|..+++-..|.. ......+.+.|++.+.+.
T Consensus 11 g~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 11 GIAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 34689999999988765 456666664344443 223345667777765443
No 260
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=21.66 E-value=1.5e+02 Score=20.90 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=27.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~ 150 (284)
.-||||+++..+.+.--..+-+.++.- ++-+... . ....||.|-++.+
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~-~-~~eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWA-T-NTESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEc-C-CCCCCcEEEecCC
Confidence 469999998877765433333434332 2333332 1 2234999987765
No 261
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.49 E-value=3.1e+02 Score=19.48 Aligned_cols=47 Identities=6% Similarity=0.127 Sum_probs=26.2
Q ss_pred CCCHHHHHHhhc-cCCceEEEEEeecC----CCCCcceEEEEEeCCHHHHHHH
Q 023297 213 AVKPEDLRNHFG-RFGTVVSARVLHDR----KGQTTRVFGFISFSSDAERDAA 260 (284)
Q Consensus 213 ~~~~~~l~~~f~-~~G~v~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~a 260 (284)
..+..+|++-+. .|+.-.+..++..- ..|++.|||.| |++.+.|.+.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 566677776664 55543333333322 23567777754 6777776654
No 262
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=20.80 E-value=63 Score=26.81 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=26.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEE
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 129 (284)
..++|+-|+|...+++-|..+..++|-+..+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3689999999999999999999999865443
No 263
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.64 E-value=3.7e+02 Score=25.24 Aligned_cols=62 Identities=19% Similarity=0.100 Sum_probs=40.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhc----cCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023297 100 CELYVCNLPRSFDISELLEMFK----PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~----~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (284)
..+-++.-..+.+..+|..+|. .+|.|.++.+...+. .......++.|.+.++|..++..+.
T Consensus 190 ~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 190 EALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred cEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHHH
Confidence 4455543322333456777664 678898888765544 2345677899999999999987754
No 264
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.57 E-value=2.3e+02 Score=17.71 Aligned_cols=51 Identities=10% Similarity=0.049 Sum_probs=34.1
Q ss_pred CCHHHHHHhhccCC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCcc
Q 023297 214 VKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDF 268 (284)
Q Consensus 214 ~~~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~ 268 (284)
-.-.+|-++|.+.| .|..+......+ ++...+.+.+.+.|.+++.-+|..+
T Consensus 13 G~La~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 13 GRLAAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred ChHHHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHHCCCEE
Confidence 34567788887776 477777654321 3666777788878888886666543
No 265
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=20.39 E-value=57 Score=25.87 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=37.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHhCCCcc
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG-QTTRVFGFISFSSDAERDAALSLNGTDF 268 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~a~~l~g~~~ 268 (284)
+++|.. +.+...++|.++-+ |.+..+...+..+. ...+|-.||+|.+.++|.+++.-+...+
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~ 174 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKG 174 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhc
Confidence 556665 22233334444433 67777766544322 2457788999999999999884433333
No 266
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=20.36 E-value=3e+02 Score=21.12 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=37.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhcc-CCc-eEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 023297 204 KLYVGNLSWAVKPEDLRNHFGR-FGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDA 259 (284)
Q Consensus 204 ~l~v~nl~~~~~~~~l~~~f~~-~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 259 (284)
+-|+..++...+..+|++.++. |+. |..|..+.-.. |. --|||.+....+|..
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aid 137 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALD 137 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHH
Confidence 4566778899999999999985 653 77777665542 21 138999977666543
No 267
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=20.27 E-value=3e+02 Score=21.45 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=26.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhcc-CCc-eEEEEEeec
Q 023297 204 KLYVGNLSWAVKPEDLRNHFGR-FGT-VVSARVLHD 237 (284)
Q Consensus 204 ~l~v~nl~~~~~~~~l~~~f~~-~G~-v~~v~i~~~ 237 (284)
+.|+..++...+..+|++.++. ||. |..|..+.-
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~ 58 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNV 58 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEec
Confidence 4688889999999999999985 564 777776654
Done!