Query 023297
Match_columns 284
No_of_seqs 254 out of 2450
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023297.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023297hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 5.5E-38 1.9E-42 254.1 20.7 177 95-283 9-185 (196)
2 4f02_A Polyadenylate-binding p 100.0 2.5E-38 8.5E-43 259.8 18.1 169 97-282 13-182 (213)
3 3smz_A Protein raver-1, ribonu 100.0 1.8E-37 6.3E-42 265.5 22.6 211 50-283 54-266 (284)
4 1b7f_A Protein (SXL-lethal pro 100.0 6.3E-37 2.2E-41 241.8 21.2 163 99-278 3-168 (168)
5 3md3_A Nuclear and cytoplasmic 100.0 6.4E-37 2.2E-41 241.1 20.8 165 100-280 1-166 (166)
6 1fxl_A Paraneoplastic encephal 100.0 1.5E-36 5E-41 239.2 22.0 163 99-278 2-167 (167)
7 2qfj_A FBP-interacting repress 100.0 4.1E-37 1.4E-41 252.7 18.7 178 99-282 28-206 (216)
8 2cjk_A Nuclear polyadenylated 100.0 2.1E-37 7.1E-42 244.4 13.2 165 99-282 3-167 (167)
9 2ghp_A U4/U6 snRNA-associated 100.0 1E-36 3.5E-41 261.9 18.0 210 52-282 80-292 (292)
10 3nmr_A Cugbp ELAV-like family 100.0 5.4E-35 1.8E-39 232.1 21.7 165 98-279 2-175 (175)
11 2yh0_A Splicing factor U2AF 65 100.0 4.5E-34 1.5E-38 231.4 18.9 179 98-283 3-196 (198)
12 2g4b_A Splicing factor U2AF 65 100.0 2.7E-34 9.4E-39 227.6 17.0 158 98-279 3-172 (172)
13 1fje_B Nucleolin RBD12, protei 100.0 4E-35 1.4E-39 233.2 11.9 166 95-282 9-175 (175)
14 3tyt_A Heterogeneous nuclear r 100.0 7.9E-34 2.7E-38 231.1 18.2 174 98-278 3-204 (205)
15 3pgw_A U1-A; protein-RNA compl 100.0 5E-33 1.7E-37 237.7 21.6 175 97-279 7-281 (282)
16 2adc_A Polypyrimidine tract-bi 100.0 7.1E-33 2.4E-37 229.8 20.0 176 96-281 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 5.6E-33 1.9E-37 225.2 16.7 173 99-281 3-197 (198)
18 3smz_A Protein raver-1, ribonu 100.0 3.2E-32 1.1E-36 232.9 21.0 155 98-282 21-176 (284)
19 3sde_A Paraspeckle component 1 100.0 3.2E-32 1.1E-36 230.1 18.7 157 96-282 19-180 (261)
20 2ghp_A U4/U6 snRNA-associated 100.0 7.1E-32 2.4E-36 231.7 16.4 161 94-282 36-198 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 5.1E-25 1.7E-29 172.0 13.6 149 128-282 2-151 (158)
22 2i2y_A Fusion protein consists 99.9 9.8E-24 3.3E-28 163.3 11.6 138 138-282 10-149 (150)
23 4f25_A Polyadenylate-binding p 99.9 6.6E-24 2.3E-28 156.7 9.6 109 99-218 5-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 9E-23 3.1E-27 146.3 10.6 82 97-178 17-98 (99)
25 2kn4_A Immunoglobulin G-bindin 99.9 1.5E-22 5.2E-27 157.9 10.3 131 51-181 11-152 (158)
26 4fxv_A ELAV-like protein 1; RN 99.9 4.1E-22 1.4E-26 142.9 11.0 80 201-280 18-98 (99)
27 3md3_A Nuclear and cytoplasmic 99.9 9.4E-22 3.2E-26 154.1 12.6 128 50-177 38-165 (166)
28 3s8s_A Histone-lysine N-methyl 99.9 2.9E-21 9.8E-26 141.1 11.2 85 97-181 4-88 (110)
29 2qfj_A FBP-interacting repress 99.8 1.7E-20 5.8E-25 153.4 14.8 133 49-181 66-207 (216)
30 2lxi_A RNA-binding protein 10; 99.8 5.3E-22 1.8E-26 140.1 4.7 83 99-181 1-85 (91)
31 2g4b_A Splicing factor U2AF 65 99.8 1E-20 3.6E-25 149.2 11.8 124 50-176 48-171 (172)
32 2jrs_A RNA-binding protein 39; 99.8 3.2E-20 1.1E-24 135.2 13.1 88 92-179 19-106 (108)
33 3s8s_A Histone-lysine N-methyl 99.8 1.7E-20 5.9E-25 137.0 11.7 83 200-282 4-87 (110)
34 2cq0_A Eukaryotic translation 99.8 2.2E-20 7.4E-25 135.0 12.1 87 95-181 11-97 (103)
35 2dnz_A Probable RNA-binding pr 99.8 3.5E-20 1.2E-24 131.9 12.8 85 97-181 3-87 (95)
36 2lkz_A RNA-binding protein 5; 99.8 4.5E-21 1.5E-25 136.0 8.0 80 99-178 9-94 (95)
37 3md1_A Nuclear and cytoplasmic 99.8 1.7E-20 5.9E-25 130.0 10.7 80 100-179 2-81 (83)
38 4f02_A Polyadenylate-binding p 99.8 3.2E-21 1.1E-25 157.8 8.0 130 49-180 53-182 (213)
39 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.3E-20 4.4E-25 131.8 10.0 82 98-179 5-86 (87)
40 2dgs_A DAZ-associated protein 99.8 4.1E-20 1.4E-24 132.5 12.8 85 96-181 7-91 (99)
41 2dnm_A SRP46 splicing factor; 99.8 2.1E-20 7.3E-25 135.0 11.2 87 95-181 9-95 (103)
42 2dgo_A Cytotoxic granule-assoc 99.8 4.6E-20 1.6E-24 136.0 13.2 88 95-182 11-98 (115)
43 1p27_B RNA-binding protein 8A; 99.8 2.3E-20 7.9E-25 135.6 11.3 85 96-180 20-104 (106)
44 2yh0_A Splicing factor U2AF 65 99.8 1.7E-20 5.9E-25 151.3 11.7 130 50-180 48-195 (198)
45 2la6_A RNA-binding protein FUS 99.8 4.1E-20 1.4E-24 132.6 12.1 85 93-177 7-99 (99)
46 1b7f_A Protein (SXL-lethal pro 99.8 4.3E-20 1.5E-24 145.0 13.3 126 49-176 41-168 (168)
47 2cpz_A CUG triplet repeat RNA- 99.8 4.3E-20 1.5E-24 136.2 12.4 88 94-181 20-107 (115)
48 2lea_A Serine/arginine-rich sp 99.8 5.8E-21 2E-25 144.8 7.7 123 142-282 5-128 (135)
49 2do4_A Squamous cell carcinoma 99.8 5.6E-20 1.9E-24 132.1 12.5 85 95-180 13-97 (100)
50 2jrs_A RNA-binding protein 39; 99.8 7E-20 2.4E-24 133.4 13.1 85 199-283 23-108 (108)
51 1whw_A Hypothetical protein ri 99.8 3.3E-20 1.1E-24 133.0 11.2 85 97-181 6-90 (99)
52 1x5u_A Splicing factor 3B subu 99.8 4.5E-20 1.5E-24 133.8 12.0 88 94-181 10-97 (105)
53 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.1E-20 7E-25 146.8 10.9 137 146-282 11-153 (165)
54 3p5t_L Cleavage and polyadenyl 99.8 5E-21 1.7E-25 134.9 6.5 81 100-180 2-84 (90)
55 2lxi_A RNA-binding protein 10; 99.8 2.2E-21 7.6E-26 136.9 4.7 81 203-283 2-85 (91)
56 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-20 3.6E-25 139.5 8.4 105 96-228 5-109 (115)
57 2lkz_A RNA-binding protein 5; 99.8 8.1E-21 2.8E-25 134.7 7.4 81 200-280 7-94 (95)
58 2d9p_A Polyadenylate-binding p 99.8 8.6E-20 3E-24 131.8 13.0 85 95-181 11-95 (103)
59 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.2E-20 7.5E-25 130.1 9.5 81 97-177 5-85 (85)
60 3md1_A Nuclear and cytoplasmic 99.8 5.9E-20 2E-24 127.3 11.6 80 203-282 2-82 (83)
61 2cph_A RNA binding motif prote 99.8 6.8E-20 2.3E-24 133.3 12.4 88 94-181 10-99 (107)
62 2x1f_A MRNA 3'-END-processing 99.8 3.2E-20 1.1E-24 132.3 10.3 83 99-181 2-84 (96)
63 2dnz_A Probable RNA-binding pr 99.8 7.6E-20 2.6E-24 130.1 12.1 84 200-283 3-87 (95)
64 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-19 4.3E-24 131.4 13.4 85 97-182 13-100 (105)
65 2dgs_A DAZ-associated protein 99.8 7.4E-20 2.5E-24 131.2 12.0 84 200-283 8-91 (99)
66 2e5h_A Zinc finger CCHC-type a 99.8 4.5E-20 1.5E-24 131.0 10.7 82 96-177 13-94 (94)
67 1x5s_A Cold-inducible RNA-bind 99.8 4.8E-20 1.6E-24 132.9 11.0 86 96-181 9-94 (102)
68 1x4h_A RNA-binding protein 28; 99.8 6.1E-20 2.1E-24 134.4 11.7 87 95-181 11-103 (111)
69 2do4_A Squamous cell carcinoma 99.8 1.1E-19 3.7E-24 130.6 12.6 84 200-284 15-99 (100)
70 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.1E-20 1.7E-24 128.8 10.6 81 201-281 5-86 (87)
71 3nmr_A Cugbp ELAV-like family 99.8 7.7E-20 2.6E-24 144.4 12.9 125 51-176 45-174 (175)
72 1fje_B Nucleolin RBD12, protei 99.8 2.4E-20 8.1E-25 147.6 9.9 125 49-179 50-174 (175)
73 3ns6_A Eukaryotic translation 99.8 1E-20 3.5E-25 135.9 7.0 81 99-179 6-93 (100)
74 2cqc_A Arginine/serine-rich sp 99.8 4.1E-20 1.4E-24 131.5 10.1 83 95-177 11-93 (95)
75 1fxl_A Paraneoplastic encephal 99.8 5.8E-20 2E-24 143.9 11.9 126 49-176 40-167 (167)
76 2lea_A Serine/arginine-rich sp 99.8 1.2E-20 4.1E-25 143.0 7.7 124 55-181 6-129 (135)
77 1oo0_B CG8781-PA, drosophila Y 99.8 3.8E-20 1.3E-24 135.3 10.1 86 95-180 22-107 (110)
78 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.1E-20 1.1E-24 133.9 9.5 85 97-181 10-94 (102)
79 2dgp_A Bruno-like 4, RNA bindi 99.8 5.2E-20 1.8E-24 133.7 10.6 88 94-181 8-98 (106)
80 2fy1_A RNA-binding motif prote 99.8 1E-19 3.6E-24 134.2 12.4 84 97-181 5-88 (116)
81 2cq0_A Eukaryotic translation 99.8 1.2E-19 4.1E-24 131.1 12.3 84 200-283 13-97 (103)
82 1x5t_A Splicing factor 3B subu 99.8 3.1E-20 1E-24 132.4 9.0 84 98-181 4-88 (96)
83 2kxn_B Transformer-2 protein h 99.8 6.9E-20 2.4E-24 137.7 11.0 86 95-180 42-127 (129)
84 2i2y_A Fusion protein consists 99.8 3.5E-20 1.2E-24 143.2 9.6 123 51-179 11-148 (150)
85 2x1f_A MRNA 3'-END-processing 99.8 7.8E-20 2.7E-24 130.3 10.5 82 202-283 2-84 (96)
86 2hvz_A Splicing factor, argini 99.8 3E-20 1E-24 133.8 8.4 100 100-211 1-100 (101)
87 2dng_A Eukaryotic translation 99.8 1.4E-19 4.7E-24 130.7 11.9 85 95-181 11-95 (103)
88 1s79_A Lupus LA protein; RRM, 99.8 6.5E-20 2.2E-24 132.2 10.0 81 97-179 9-89 (103)
89 4f25_A Polyadenylate-binding p 99.8 7.7E-20 2.6E-24 134.8 10.5 80 202-283 5-85 (115)
90 1whw_A Hypothetical protein ri 99.8 1.1E-19 3.8E-24 130.3 10.8 84 200-283 6-90 (99)
91 2cpf_A RNA binding motif prote 99.8 6E-20 2E-24 131.4 9.3 84 98-181 4-90 (98)
92 2cpz_A CUG triplet repeat RNA- 99.8 1.1E-19 3.8E-24 134.0 10.8 84 200-283 23-107 (115)
93 3s7r_A Heterogeneous nuclear r 99.8 1E-19 3.5E-24 127.3 10.1 81 95-176 7-87 (87)
94 2dgo_A Cytotoxic granule-assoc 99.8 2.7E-19 9.4E-24 131.8 12.8 85 199-283 12-97 (115)
95 1x5u_A Splicing factor 3B subu 99.8 1.7E-19 5.9E-24 130.7 11.5 84 200-283 13-97 (105)
96 1wi8_A EIF-4B, eukaryotic tran 99.8 1.5E-19 5.2E-24 130.8 11.0 85 96-182 12-97 (104)
97 3p5t_L Cleavage and polyadenyl 99.8 2.3E-20 7.8E-25 131.5 6.4 81 203-283 2-85 (90)
98 2dng_A Eukaryotic translation 99.8 3.1E-19 1.1E-23 128.9 12.5 83 200-283 13-95 (103)
99 2khc_A Testis-specific RNP-typ 99.8 7.5E-20 2.6E-24 135.5 9.4 81 96-176 37-117 (118)
100 2div_A TRNA selenocysteine ass 99.8 8.7E-20 3E-24 130.8 9.4 83 97-179 7-94 (99)
101 2dnh_A Bruno-like 5, RNA bindi 99.8 4.3E-19 1.5E-23 128.6 13.2 83 200-283 13-99 (105)
102 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1E-19 3.5E-24 126.7 9.5 80 200-279 5-85 (85)
103 4a8x_A RNA-binding protein wit 99.8 7.9E-20 2.7E-24 128.1 9.0 82 98-179 3-85 (88)
104 2dhg_A TRNA selenocysteine ass 99.8 1.5E-19 5E-24 130.8 10.6 85 97-182 7-93 (104)
105 2cpe_A RNA-binding protein EWS 99.8 1.1E-19 3.6E-24 133.6 10.0 87 95-181 11-105 (113)
106 1l3k_A Heterogeneous nuclear r 99.8 1.3E-19 4.4E-24 145.9 11.2 131 50-182 52-186 (196)
107 1p27_B RNA-binding protein 8A; 99.8 2.5E-19 8.5E-24 130.1 11.6 84 200-283 21-105 (106)
108 3ex7_B RNA-binding protein 8A; 99.8 1.8E-19 6.3E-24 135.0 11.1 88 95-182 18-105 (126)
109 2la6_A RNA-binding protein FUS 99.8 3.2E-19 1.1E-23 127.9 11.8 80 200-279 11-99 (99)
110 1p1t_A Cleavage stimulation fa 99.8 2.8E-20 9.5E-25 134.6 6.2 84 99-182 8-91 (104)
111 2cjk_A Nuclear polyadenylated 99.8 3.4E-20 1.2E-24 145.5 7.0 126 49-179 41-166 (167)
112 2d9p_A Polyadenylate-binding p 99.8 4.8E-19 1.6E-23 127.9 12.5 82 200-283 13-95 (103)
113 2cq3_A RNA-binding protein 9; 99.8 5.5E-19 1.9E-23 127.6 12.8 86 94-181 10-95 (103)
114 2cqc_A Arginine/serine-rich sp 99.8 2.6E-19 8.7E-24 127.3 10.8 81 200-280 13-94 (95)
115 2cqd_A RNA-binding region cont 99.8 3.5E-19 1.2E-23 131.4 11.9 85 95-180 13-97 (116)
116 3ucg_A Polyadenylate-binding p 99.8 1.8E-19 6.1E-24 126.5 9.8 80 99-179 6-85 (89)
117 1x4h_A RNA-binding protein 28; 99.8 3.2E-19 1.1E-23 130.6 11.5 84 200-283 13-103 (111)
118 2dnm_A SRP46 splicing factor; 99.8 2.3E-19 7.9E-24 129.5 10.6 83 200-282 11-94 (103)
119 3ns6_A Eukaryotic translation 99.8 3.1E-20 1.1E-24 133.4 5.9 80 202-281 6-93 (100)
120 2m2b_A RNA-binding protein 10; 99.8 1E-19 3.4E-24 137.3 9.0 85 96-181 20-110 (131)
121 1wi8_A EIF-4B, eukaryotic tran 99.8 3.1E-19 1.1E-23 129.1 11.3 83 200-283 13-96 (104)
122 1x5t_A Splicing factor 3B subu 99.8 1.1E-19 3.6E-24 129.6 8.6 84 200-283 3-88 (96)
123 2ywk_A Putative RNA-binding pr 99.8 1.2E-19 4.1E-24 129.0 8.9 81 96-177 13-93 (95)
124 2cph_A RNA binding motif prote 99.8 4E-19 1.4E-23 129.2 11.9 84 200-283 13-99 (107)
125 1x5s_A Cold-inducible RNA-bind 99.8 1.8E-19 6E-24 129.9 9.8 84 200-283 10-94 (102)
126 2mss_A Protein (musashi1); RNA 99.8 6.1E-20 2.1E-24 124.7 6.8 75 101-176 1-75 (75)
127 1x4e_A RNA binding motif, sing 99.8 4.9E-20 1.7E-24 128.3 6.5 80 97-176 3-82 (85)
128 3n9u_C Cleavage and polyadenyl 99.8 1.4E-19 4.8E-24 140.3 9.7 81 99-179 55-137 (156)
129 2dgv_A HnRNP M, heterogeneous 99.8 3.6E-19 1.2E-23 125.8 11.0 82 97-180 6-87 (92)
130 2do0_A HnRNP M, heterogeneous 99.8 9.3E-19 3.2E-23 128.7 13.6 84 96-180 12-95 (114)
131 3ulh_A THO complex subunit 4; 99.8 2.8E-19 9.7E-24 130.0 10.7 82 95-177 25-106 (107)
132 1oo0_B CG8781-PA, drosophila Y 99.8 2.5E-19 8.6E-24 131.0 10.4 84 200-283 24-108 (110)
133 2e5h_A Zinc finger CCHC-type a 99.8 3.4E-19 1.2E-23 126.4 10.8 80 200-279 14-94 (94)
134 3s7r_A Heterogeneous nuclear r 99.8 3.5E-19 1.2E-23 124.5 10.7 79 200-278 9-87 (87)
135 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.5E-19 5.3E-24 130.2 9.0 84 200-283 10-94 (102)
136 3pgw_S U1-70K; protein-RNA com 99.8 6.5E-21 2.2E-25 171.3 2.2 83 200-282 100-183 (437)
137 1u6f_A Tcubp1, RNA-binding pro 99.8 4E-19 1.4E-23 135.4 11.8 88 95-182 38-125 (139)
138 3ucg_A Polyadenylate-binding p 99.8 3.2E-19 1.1E-23 125.2 10.3 81 202-282 6-86 (89)
139 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.1E-19 3.8E-24 130.5 8.0 83 200-283 17-100 (100)
140 2cqp_A RNA-binding protein 12; 99.8 1.5E-19 5.1E-24 129.4 8.6 83 97-179 13-95 (98)
141 2cpf_A RNA binding motif prote 99.8 2.4E-19 8E-24 128.3 9.6 83 201-283 4-90 (98)
142 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.7E-19 1.6E-23 127.9 11.2 85 95-181 11-95 (103)
143 2cpe_A RNA-binding protein EWS 99.8 2.6E-19 8.9E-24 131.5 9.9 85 199-283 12-105 (113)
144 2dh8_A DAZ-associated protein 99.8 1.5E-19 5.1E-24 131.0 8.5 86 95-181 12-97 (105)
145 1x5o_A RNA binding motif, sing 99.8 1.8E-18 6.3E-23 127.2 14.5 82 96-178 22-111 (114)
146 2rs2_A Musashi-1, RNA-binding 99.8 2.2E-19 7.5E-24 131.0 9.4 84 96-180 22-105 (109)
147 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.1E-19 3.7E-24 124.1 7.1 76 100-176 1-76 (77)
148 1s79_A Lupus LA protein; RRM, 99.8 1.9E-19 6.3E-24 129.8 8.5 79 201-280 10-88 (103)
149 4a8x_A RNA-binding protein wit 99.8 2.8E-19 9.6E-24 125.2 9.0 83 201-283 3-87 (88)
150 2cq4_A RNA binding motif prote 99.8 2.1E-19 7.2E-24 132.2 8.7 82 98-180 24-105 (114)
151 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.3E-19 4.6E-24 130.1 7.5 83 95-179 15-98 (100)
152 2kxn_B Transformer-2 protein h 99.8 4.3E-19 1.5E-23 133.3 10.5 83 200-282 44-127 (129)
153 2dgp_A Bruno-like 4, RNA bindi 99.8 4E-19 1.4E-23 128.9 9.9 84 200-283 11-98 (106)
154 2dis_A Unnamed protein product 99.8 4.1E-19 1.4E-23 129.6 10.0 85 98-182 7-95 (109)
155 2cqg_A TDP-43, TAR DNA-binding 99.8 8.1E-19 2.8E-23 126.7 11.4 86 94-181 10-95 (103)
156 2div_A TRNA selenocysteine ass 99.8 3.2E-19 1.1E-23 127.8 9.2 84 200-283 7-96 (99)
157 2fy1_A RNA-binding motif prote 99.8 5.4E-19 1.8E-23 130.4 10.5 83 200-283 5-88 (116)
158 2ek1_A RNA-binding protein 12; 99.8 1.2E-19 4E-24 129.1 6.7 80 98-177 14-93 (95)
159 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.6E-19 2.3E-23 136.9 11.6 86 96-181 36-121 (156)
160 2dgx_A KIAA0430 protein; RRM d 99.8 3.8E-19 1.3E-23 126.8 9.2 81 97-180 7-91 (96)
161 2dhg_A TRNA selenocysteine ass 99.8 5.1E-19 1.7E-23 128.0 10.1 83 200-283 7-92 (104)
162 1sjq_A Polypyrimidine tract-bi 99.8 2.6E-19 8.8E-24 128.4 8.3 80 96-181 13-94 (105)
163 2mss_A Protein (musashi1); RNA 99.8 1.6E-19 5.4E-24 122.6 6.8 75 204-278 1-75 (75)
164 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.2E-19 1.8E-23 138.8 10.7 87 95-181 68-154 (165)
165 2kt5_A RNA and export factor-b 99.8 1.1E-18 3.8E-23 130.3 11.9 85 95-180 31-115 (124)
166 2khc_A Testis-specific RNP-typ 99.8 5.5E-19 1.9E-23 130.8 10.2 81 199-279 37-118 (118)
167 2dh8_A DAZ-associated protein 99.8 3.9E-19 1.3E-23 128.8 9.2 84 200-283 14-97 (105)
168 2dgw_A Probable RNA-binding pr 99.8 6.8E-19 2.3E-23 124.1 10.1 83 200-284 8-90 (91)
169 2dgw_A Probable RNA-binding pr 99.8 8E-19 2.7E-23 123.8 10.3 81 96-179 7-87 (91)
170 1u6f_A Tcubp1, RNA-binding pro 99.8 1.1E-18 3.8E-23 133.0 11.9 85 199-283 39-124 (139)
171 2cqg_A TDP-43, TAR DNA-binding 99.8 1.6E-18 5.3E-23 125.2 12.0 83 200-283 13-95 (103)
172 2dgv_A HnRNP M, heterogeneous 99.8 1.2E-18 4E-23 123.1 11.0 82 200-283 6-88 (92)
173 2cpi_A CCR4-NOT transcription 99.8 5.2E-19 1.8E-23 129.5 9.4 84 97-180 13-102 (111)
174 2cq3_A RNA-binding protein 9; 99.8 2.5E-18 8.5E-23 124.1 12.9 82 200-283 13-95 (103)
175 1x4b_A Heterogeneous nuclear r 99.8 2.4E-19 8.3E-24 132.3 7.7 83 98-181 26-108 (116)
176 2wbr_A GW182, gawky, LD47780P; 99.8 2.4E-19 8.3E-24 122.9 7.1 73 99-177 7-79 (89)
177 2ki2_A SS-DNA binding protein 99.8 6.8E-20 2.3E-24 129.0 4.4 80 100-180 2-81 (90)
178 1x4a_A Splicing factor, argini 99.8 1.2E-18 4.1E-23 127.1 11.2 84 95-181 18-101 (109)
179 2rs2_A Musashi-1, RNA-binding 99.8 7.4E-19 2.5E-23 128.2 10.0 84 200-283 23-106 (109)
180 1wg5_A Heterogeneous nuclear r 99.8 1.6E-18 5.5E-23 125.3 11.7 82 96-179 12-94 (104)
181 2cqp_A RNA-binding protein 12; 99.8 5.1E-19 1.7E-23 126.5 9.0 83 200-282 13-96 (98)
182 3n9u_C Cleavage and polyadenyl 99.8 4.5E-19 1.5E-23 137.5 9.4 81 201-281 54-137 (156)
183 2cpx_A Hypothetical protein FL 99.8 3.3E-19 1.1E-23 131.4 8.1 87 95-181 21-107 (115)
184 3r27_A HnRNP L, heterogeneous 99.8 8.5E-19 2.9E-23 124.5 9.8 78 96-179 18-97 (100)
185 2nlw_A Eukaryotic translation 99.8 4.7E-19 1.6E-23 128.4 8.8 82 96-179 12-100 (105)
186 2ywk_A Putative RNA-binding pr 99.8 8.4E-19 2.9E-23 124.6 9.8 80 200-280 14-94 (95)
187 1x4d_A Matrin 3; structural ge 99.8 6.7E-19 2.3E-23 126.1 9.2 78 97-180 13-93 (102)
188 1x4b_A Heterogeneous nuclear r 99.8 6.5E-19 2.2E-23 130.0 9.4 84 200-283 25-108 (116)
189 2cq1_A PTB-like protein L; RRM 99.8 2.8E-18 9.6E-23 122.9 12.3 81 95-181 11-93 (101)
190 1wez_A HnRNP H', FTP-3, hetero 99.8 9.8E-19 3.4E-23 125.9 9.9 81 96-179 12-92 (102)
191 1p1t_A Cleavage stimulation fa 99.8 5.5E-19 1.9E-23 127.8 8.6 82 201-282 7-89 (104)
192 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.9E-18 6.6E-23 124.7 11.4 82 200-283 13-95 (103)
193 2m2b_A RNA-binding protein 10; 99.8 2.7E-19 9.1E-24 135.0 7.0 82 200-282 21-109 (131)
194 3ex7_B RNA-binding protein 8A; 99.8 1.2E-18 4E-23 130.5 10.4 84 200-283 20-104 (126)
195 1wez_A HnRNP H', FTP-3, hetero 99.8 9.9E-19 3.4E-23 125.9 9.6 82 200-283 13-94 (102)
196 1wel_A RNA-binding protein 12; 99.8 6.9E-19 2.3E-23 131.5 9.0 83 96-179 22-104 (124)
197 2cqd_A RNA-binding region cont 99.8 1.9E-18 6.5E-23 127.5 11.2 81 200-281 15-96 (116)
198 3ulh_A THO complex subunit 4; 99.8 1.9E-18 6.4E-23 125.6 11.0 79 200-279 27-106 (107)
199 2err_A Ataxin-2-binding protei 99.8 7.8E-19 2.7E-23 128.1 9.0 83 95-179 25-107 (109)
200 1wex_A Hypothetical protein (r 99.8 2.5E-18 8.4E-23 124.0 11.4 81 95-181 11-93 (104)
201 2ad9_A Polypyrimidine tract-bi 99.8 2E-18 7E-23 126.8 11.1 81 96-182 28-110 (119)
202 1sjq_A Polypyrimidine tract-bi 99.8 6E-19 2E-23 126.5 8.0 77 200-282 14-93 (105)
203 2krb_A Eukaryotic translation 99.8 3.6E-19 1.2E-23 122.8 6.6 72 100-173 2-80 (81)
204 2dgx_A KIAA0430 protein; RRM d 99.8 1.1E-18 3.6E-23 124.4 9.2 81 200-283 7-92 (96)
205 1x4e_A RNA binding motif, sing 99.8 2.6E-19 8.9E-24 124.6 5.9 80 201-280 4-84 (85)
206 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 9.7E-19 3.3E-23 133.4 9.6 81 96-176 60-140 (140)
207 2cpi_A CCR4-NOT transcription 99.8 1.6E-18 5.3E-23 126.9 10.2 84 200-283 13-103 (111)
208 2jwn_A Embryonic polyadenylate 99.8 1.1E-18 3.7E-23 130.4 9.5 80 99-179 36-115 (124)
209 3r27_A HnRNP L, heterogeneous 99.8 1.3E-18 4.5E-23 123.5 9.4 77 200-282 19-98 (100)
210 2cq1_A PTB-like protein L; RRM 99.8 3.8E-18 1.3E-22 122.2 11.7 77 200-282 13-92 (101)
211 2jwn_A Embryonic polyadenylate 99.8 1.7E-18 5.7E-23 129.3 10.1 82 201-282 35-116 (124)
212 2ek1_A RNA-binding protein 12; 99.8 5.7E-19 1.9E-23 125.5 7.2 80 201-280 14-94 (95)
213 2dis_A Unnamed protein product 99.8 1.4E-18 4.7E-23 126.8 9.4 84 200-283 6-94 (109)
214 1x4f_A Matrin 3; structural ge 99.8 3.1E-18 1E-22 124.5 11.1 80 96-181 22-104 (112)
215 1wg5_A Heterogeneous nuclear r 99.8 3.4E-18 1.2E-22 123.6 11.3 82 200-282 13-95 (104)
216 2cpy_A RNA-binding protein 12; 99.8 7.3E-19 2.5E-23 129.3 7.8 83 96-180 12-95 (114)
217 2fc9_A NCL protein; structure 99.8 2.5E-18 8.5E-23 123.6 10.4 82 96-181 12-93 (101)
218 2cq4_A RNA binding motif prote 99.8 5.6E-19 1.9E-23 129.9 7.1 81 201-281 24-104 (114)
219 2hgl_A HNRPF protein, heteroge 99.8 8.3E-19 2.8E-23 132.5 8.1 80 97-178 42-124 (136)
220 1x5o_A RNA binding motif, sing 99.8 6.8E-18 2.3E-22 124.1 12.8 82 200-282 23-113 (114)
221 2db1_A Heterogeneous nuclear r 99.8 1.2E-18 4.1E-23 128.9 8.7 81 97-179 15-98 (118)
222 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.9E-18 1.3E-22 132.5 11.9 84 200-283 37-121 (156)
223 2dnq_A RNA-binding protein 4B; 99.8 5.2E-18 1.8E-22 119.3 11.3 77 97-181 6-82 (90)
224 2do0_A HnRNP M, heterogeneous 99.8 7.9E-18 2.7E-22 123.7 12.7 81 200-281 13-94 (114)
225 1iqt_A AUF1, heterogeneous nuc 99.8 3.7E-19 1.3E-23 120.7 5.0 75 101-176 1-75 (75)
226 2ki2_A SS-DNA binding protein 99.8 2.7E-19 9.1E-24 126.0 4.4 79 203-282 2-81 (90)
227 2cpj_A Non-POU domain-containi 99.8 4.7E-18 1.6E-22 121.7 11.1 80 95-180 11-90 (99)
228 2a3j_A U1 small nuclear ribonu 99.8 3E-18 1E-22 128.0 10.1 82 97-181 27-112 (127)
229 2wbr_A GW182, gawky, LD47780P; 99.8 1.5E-18 5.3E-23 118.9 7.7 72 202-279 7-79 (89)
230 2fc8_A NCL protein; structure 99.8 5.9E-18 2E-22 121.8 11.2 84 95-181 11-94 (102)
231 1uaw_A Mouse-musashi-1; RNP-ty 99.8 9.3E-19 3.2E-23 119.4 6.5 76 203-279 1-77 (77)
232 2cpy_A RNA-binding protein 12; 99.8 1.2E-18 4.1E-23 128.2 7.4 82 200-282 13-95 (114)
233 1fj7_A Nucleolin RBD1, protein 99.8 2.3E-19 7.7E-24 129.1 3.4 83 96-180 14-96 (101)
234 2lmi_A GRSF-1, G-rich sequence 99.8 9.9E-19 3.4E-23 127.1 6.7 82 96-179 8-92 (107)
235 1x4a_A Splicing factor, argini 99.8 9.5E-18 3.2E-22 122.3 12.0 81 200-283 20-101 (109)
236 1why_A Hypothetical protein ri 99.8 5.9E-18 2E-22 120.7 10.6 79 96-180 14-94 (97)
237 2a3j_A U1 small nuclear ribonu 99.8 3.1E-18 1.1E-22 127.9 9.4 81 200-283 27-112 (127)
238 2err_A Ataxin-2-binding protei 99.8 2.6E-18 8.9E-23 125.3 8.8 82 199-282 26-108 (109)
239 2fc8_A NCL protein; structure 99.8 9E-18 3.1E-22 120.9 11.5 82 200-284 13-95 (102)
240 1wex_A Hypothetical protein (r 99.8 7.1E-18 2.4E-22 121.6 10.8 77 200-282 13-92 (104)
241 2e5j_A Methenyltetrahydrofolat 99.8 8.6E-18 3E-22 119.9 11.2 79 96-179 16-94 (97)
242 2ad9_A Polypyrimidine tract-bi 99.8 4.1E-18 1.4E-22 125.2 9.7 77 200-282 29-108 (119)
243 3pgw_A U1-A; protein-RNA compl 99.8 7.9E-18 2.7E-22 143.3 12.8 75 98-177 206-281 (282)
244 2jvr_A Nucleolar protein 3; RN 99.8 1.2E-18 4.2E-23 126.9 6.7 80 96-179 25-105 (111)
245 3q2s_C Cleavage and polyadenyl 99.8 2.2E-18 7.4E-23 142.1 9.0 82 98-179 67-150 (229)
246 1iqt_A AUF1, heterogeneous nuc 99.7 6.2E-19 2.1E-23 119.6 4.6 75 204-278 1-75 (75)
247 2db1_A Heterogeneous nuclear r 99.7 1.9E-18 6.6E-23 127.8 7.6 81 200-281 15-98 (118)
248 2dnn_A RNA-binding protein 12; 99.7 2.4E-18 8.1E-23 125.1 7.8 78 98-178 15-92 (109)
249 1x4c_A Splicing factor, argini 99.7 6.9E-18 2.4E-22 122.8 10.3 79 96-181 12-95 (108)
250 2nlw_A Eukaryotic translation 99.7 3.4E-18 1.2E-22 123.8 8.6 81 200-282 13-101 (105)
251 2kt5_A RNA and export factor-b 99.7 4.8E-18 1.7E-22 126.8 9.6 82 200-282 33-115 (124)
252 2ytc_A PRE-mRNA-splicing facto 99.7 6E-18 2.1E-22 117.6 9.5 76 96-177 9-85 (85)
253 2hgl_A HNRPF protein, heteroge 99.7 1.5E-18 5.3E-23 131.0 6.8 81 200-281 42-125 (136)
254 1why_A Hypothetical protein ri 99.7 1.2E-17 4E-22 119.2 11.1 79 200-284 15-96 (97)
255 1fj7_A Nucleolin RBD1, protein 99.7 4.5E-19 1.5E-23 127.6 3.5 83 200-283 15-97 (101)
256 1x4g_A Nucleolysin TIAR; struc 99.7 3.8E-18 1.3E-22 124.4 8.5 80 96-181 22-101 (109)
257 2dnq_A RNA-binding protein 4B; 99.7 1.2E-17 4.2E-22 117.4 10.8 76 200-283 6-82 (90)
258 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 9.3E-18 3.2E-22 127.9 11.0 80 199-278 60-140 (140)
259 3tyt_A Heterogeneous nuclear r 99.7 3.2E-18 1.1E-22 138.9 8.9 123 52-176 41-204 (205)
260 1x4d_A Matrin 3; structural ge 99.7 4.2E-18 1.4E-22 122.0 8.5 77 200-282 13-93 (102)
261 2dnn_A RNA-binding protein 12; 99.7 3E-18 1E-22 124.5 7.8 78 202-281 16-93 (109)
262 1wel_A RNA-binding protein 12; 99.7 1.9E-18 6.4E-23 129.1 6.9 82 200-281 23-104 (124)
263 2jvo_A Nucleolar protein 3; nu 99.7 6.6E-18 2.2E-22 122.9 9.6 78 95-180 27-104 (108)
264 2lcw_A RNA-binding protein FUS 99.6 1.2E-19 4.2E-24 133.9 0.0 86 97-182 5-98 (116)
265 2fc9_A NCL protein; structure 99.7 1.3E-17 4.4E-22 119.9 10.6 80 200-283 13-93 (101)
266 1nu4_A U1A RNA binding domain; 99.7 2.9E-18 9.8E-23 122.3 7.0 81 97-180 6-90 (97)
267 2la4_A Nuclear and cytoplasmic 99.7 4.8E-18 1.6E-22 122.2 8.1 75 98-178 26-100 (101)
268 2j8a_A Histone-lysine N-methyl 99.7 2.7E-18 9.3E-23 125.5 6.8 79 100-178 3-95 (136)
269 1x4c_A Splicing factor, argini 99.7 1.4E-17 4.9E-22 121.2 10.4 78 200-284 13-96 (108)
270 2cpx_A Hypothetical protein FL 99.7 2.9E-18 1E-22 126.3 6.8 84 200-283 23-107 (115)
271 2krb_A Eukaryotic translation 99.7 3.4E-18 1.2E-22 117.8 6.6 72 203-276 2-81 (81)
272 2lmi_A GRSF-1, G-rich sequence 99.7 2.1E-18 7.3E-23 125.3 5.8 81 200-281 9-92 (107)
273 2xs2_A Deleted in azoospermia- 99.7 1.9E-18 6.4E-23 124.5 5.4 80 98-180 8-87 (102)
274 1fjc_A Nucleolin RBD2, protein 99.7 3.1E-18 1.1E-22 121.9 6.4 81 95-180 12-92 (96)
275 2kvi_A Nuclear polyadenylated 99.7 1.3E-17 4.3E-22 118.8 9.5 78 96-181 7-85 (96)
276 2xnq_A Nuclear polyadenylated 99.7 1.9E-17 6.5E-22 118.1 10.3 76 95-178 18-94 (97)
277 2cpj_A Non-POU domain-containi 99.7 1.7E-17 5.9E-22 118.8 10.0 78 200-283 13-91 (99)
278 2adc_A Polypyrimidine tract-bi 99.7 4.6E-17 1.6E-21 134.5 13.9 121 53-178 72-227 (229)
279 2e5j_A Methenyltetrahydrofolat 99.7 1.9E-17 6.5E-22 118.1 10.0 79 200-283 17-96 (97)
280 3q2s_C Cleavage and polyadenyl 99.7 6.9E-18 2.4E-22 139.1 8.7 81 201-281 67-150 (229)
281 2dgu_A Heterogeneous nuclear r 99.7 2.4E-17 8.1E-22 118.9 10.4 79 97-183 9-87 (103)
282 2dgt_A RNA-binding protein 30; 99.7 2E-17 7E-22 116.7 9.8 78 96-181 7-84 (92)
283 1nu4_A U1A RNA binding domain; 99.7 5.1E-18 1.7E-22 121.0 6.7 81 200-283 6-91 (97)
284 1wf1_A RNA-binding protein RAL 99.7 2.8E-17 9.5E-22 120.0 10.7 78 95-180 23-101 (110)
285 2hgn_A Heterogeneous nuclear r 99.7 2.7E-18 9.2E-23 130.1 5.5 82 96-180 43-124 (139)
286 3pgw_S U1-70K; protein-RNA com 99.7 6.5E-18 2.2E-22 151.8 8.8 84 97-180 100-183 (437)
287 1x4f_A Matrin 3; structural ge 99.7 7.2E-18 2.5E-22 122.5 7.4 78 200-283 23-104 (112)
288 2f3j_A RNA and export factor b 99.7 1.5E-17 5.2E-22 131.6 9.8 84 95-179 84-167 (177)
289 2hgm_A HNRPF protein, heteroge 99.7 1.3E-17 4.3E-22 124.1 8.5 79 97-178 40-120 (126)
290 1x4g_A Nucleolysin TIAR; struc 99.7 1.9E-17 6.6E-22 120.7 9.3 78 200-283 23-101 (109)
291 2cpd_A Apobec-1 stimulating pr 99.7 4.2E-17 1.4E-21 116.7 10.9 77 96-180 12-90 (99)
292 1whx_A Hypothetical protein ri 99.7 2.1E-17 7.1E-22 120.8 9.4 75 99-179 10-84 (111)
293 2la4_A Nuclear and cytoplasmic 99.7 9.4E-18 3.2E-22 120.6 7.5 75 201-281 26-101 (101)
294 1qm9_A Polypyrimidine tract-bi 99.7 2.8E-17 9.6E-22 132.6 11.1 121 53-178 41-196 (198)
295 2dha_A FLJ20171 protein; RRM d 99.7 6E-18 2E-22 125.5 6.4 80 98-179 22-105 (123)
296 2lcw_A RNA-binding protein FUS 99.6 4E-19 1.4E-23 131.1 0.0 84 200-283 5-97 (116)
297 2dnp_A RNA-binding protein 14; 99.7 2.5E-17 8.4E-22 115.8 9.2 77 96-180 6-82 (90)
298 2xnq_A Nuclear polyadenylated 99.7 4.2E-17 1.4E-21 116.3 10.5 75 200-282 20-96 (97)
299 2xs2_A Deleted in azoospermia- 99.7 8.6E-18 2.9E-22 121.0 6.9 80 201-282 8-87 (102)
300 3sde_A Paraspeckle component 1 99.7 2.5E-17 8.6E-22 138.7 10.9 122 50-180 55-180 (261)
301 2jvo_A Nucleolar protein 3; nu 99.7 2.5E-17 8.5E-22 119.8 9.4 76 200-283 29-105 (108)
302 2ytc_A PRE-mRNA-splicing facto 99.7 3.7E-17 1.3E-21 113.6 9.7 74 200-279 10-85 (85)
303 2hgm_A HNRPF protein, heteroge 99.7 7.3E-18 2.5E-22 125.4 6.4 80 200-281 40-121 (126)
304 2hvz_A Splicing factor, argini 99.7 9.6E-18 3.3E-22 120.5 6.8 75 203-282 1-76 (101)
305 1fjc_A Nucleolin RBD2, protein 99.7 1.2E-17 4.2E-22 118.8 7.2 79 200-283 14-93 (96)
306 2e5g_A U6 snRNA-specific termi 99.7 3.9E-17 1.3E-21 115.8 9.7 77 98-180 7-83 (94)
307 2e44_A Insulin-like growth fac 99.7 3.2E-17 1.1E-21 116.6 9.2 79 97-179 13-92 (96)
308 2hgn_A Heterogeneous nuclear r 99.7 4.9E-18 1.7E-22 128.7 5.0 81 200-282 44-124 (139)
309 2cqh_A IGF-II mRNA-binding pro 99.7 1.6E-17 5.4E-22 117.5 7.4 78 97-181 6-85 (93)
310 2cpd_A Apobec-1 stimulating pr 99.7 9E-17 3.1E-21 115.0 11.4 76 200-283 13-91 (99)
311 2jvr_A Nucleolar protein 3; RN 99.7 1.1E-17 3.9E-22 121.7 6.7 77 201-281 27-105 (111)
312 3lqv_A PRE-mRNA branch site pr 99.7 3.9E-17 1.3E-21 120.2 9.7 79 200-281 6-85 (115)
313 2dha_A FLJ20171 protein; RRM d 99.7 5.9E-18 2E-22 125.6 5.2 81 200-281 21-105 (123)
314 1x5p_A Negative elongation fac 99.7 9.1E-17 3.1E-21 114.5 10.9 79 95-181 11-89 (97)
315 2diu_A KIAA0430 protein; struc 99.7 5.3E-17 1.8E-21 112.3 9.1 72 202-283 8-86 (96)
316 2dgu_A Heterogeneous nuclear r 99.7 5.1E-17 1.7E-21 117.2 9.4 76 200-283 9-85 (103)
317 2kvi_A Nuclear polyadenylated 99.7 4.4E-17 1.5E-21 116.0 8.8 76 200-283 8-85 (96)
318 1whx_A Hypothetical protein ri 99.7 3.4E-17 1.2E-21 119.7 8.4 74 202-281 10-84 (111)
319 2dgt_A RNA-binding protein 30; 99.7 7.8E-17 2.7E-21 113.7 9.8 76 200-283 8-84 (92)
320 3d2w_A TAR DNA-binding protein 99.7 5.8E-17 2E-21 113.6 8.8 77 200-284 9-87 (89)
321 1wg1_A KIAA1579 protein, homol 99.7 4.4E-17 1.5E-21 114.0 8.2 74 98-178 4-77 (88)
322 3egn_A RNA-binding protein 40; 99.7 6.7E-18 2.3E-22 129.3 3.9 82 97-181 43-132 (143)
323 2cq2_A Hypothetical protein LO 99.7 3.3E-17 1.1E-21 119.1 7.2 78 97-180 23-107 (114)
324 2dnp_A RNA-binding protein 14; 99.7 9.6E-17 3.3E-21 112.7 9.2 76 200-283 7-83 (90)
325 1sjr_A Polypyrimidine tract-bi 99.7 1E-16 3.6E-21 123.6 10.2 77 202-282 46-125 (164)
326 3zzy_A Polypyrimidine tract-bi 99.7 1.7E-16 5.8E-21 118.0 10.8 75 203-282 29-107 (130)
327 2diu_A KIAA0430 protein; struc 99.7 1.3E-16 4.3E-21 110.4 9.3 72 99-180 8-85 (96)
328 2j8a_A Histone-lysine N-methyl 99.7 4E-17 1.4E-21 119.3 7.1 78 203-280 3-95 (136)
329 2cqh_A IGF-II mRNA-binding pro 99.7 3.1E-17 1.1E-21 116.0 6.2 77 200-283 6-85 (93)
330 1wf1_A RNA-binding protein RAL 99.7 1E-16 3.5E-21 117.0 9.1 74 201-282 26-101 (110)
331 2f3j_A RNA and export factor b 99.7 7.1E-17 2.4E-21 127.8 8.6 81 200-281 86-167 (177)
332 3beg_B Splicing factor, argini 99.7 7.1E-17 2.4E-21 118.8 7.9 74 98-178 15-93 (115)
333 2dnl_A Cytoplasmic polyadenyla 99.7 9.2E-17 3.2E-21 118.0 8.5 77 98-177 7-86 (114)
334 2e5g_A U6 snRNA-specific termi 99.7 1.6E-16 5.6E-21 112.5 9.4 78 201-283 7-84 (94)
335 1sjr_A Polypyrimidine tract-bi 99.7 1.8E-16 6E-21 122.3 10.1 78 99-180 46-125 (164)
336 2e5i_A Heterogeneous nuclear r 99.7 8.7E-16 3E-20 113.7 13.5 75 100-180 26-103 (124)
337 3zzy_A Polypyrimidine tract-bi 99.7 1.8E-16 6.2E-21 117.8 9.8 75 100-179 29-106 (130)
338 2pe8_A Splicing factor 45; RRM 99.7 3.7E-16 1.3E-20 112.7 11.1 81 200-280 6-93 (105)
339 2e44_A Insulin-like growth fac 99.7 1.5E-16 5.2E-21 113.1 9.0 78 201-282 14-93 (96)
340 3d2w_A TAR DNA-binding protein 99.7 1.3E-16 4.4E-21 111.8 8.3 76 96-180 8-85 (89)
341 1x5p_A Negative elongation fac 99.7 3.8E-16 1.3E-20 111.3 10.8 76 200-283 13-89 (97)
342 2e5i_A Heterogeneous nuclear r 99.7 7.7E-16 2.6E-20 113.9 12.7 74 203-282 26-103 (124)
343 2cq2_A Hypothetical protein LO 99.7 6.4E-17 2.2E-21 117.6 6.7 77 200-282 23-107 (114)
344 1wg1_A KIAA1579 protein, homol 99.7 1.1E-16 3.9E-21 111.9 7.8 74 201-281 4-78 (88)
345 3egn_A RNA-binding protein 40; 99.7 2.6E-17 8.9E-22 125.9 4.4 83 200-282 43-131 (143)
346 2pe8_A Splicing factor 45; RRM 99.7 4.6E-16 1.6E-20 112.2 10.4 81 98-178 7-93 (105)
347 3beg_B Splicing factor, argini 99.7 2.1E-16 7.1E-21 116.3 7.9 75 201-282 15-95 (115)
348 2hzc_A Splicing factor U2AF 65 99.7 1.5E-16 5E-21 111.0 6.7 71 98-175 5-86 (87)
349 2bz2_A Negative elongation fac 99.7 5.7E-16 1.9E-20 114.8 10.2 77 96-180 36-112 (121)
350 2voo_A Lupus LA protein; RNA-b 99.7 8.3E-16 2.8E-20 123.4 11.8 78 202-280 109-186 (193)
351 2voo_A Lupus LA protein; RNA-b 99.6 8.8E-16 3E-20 123.2 9.9 80 99-180 109-188 (193)
352 1wf0_A TDP-43, TAR DNA-binding 99.6 2E-16 6.9E-21 110.6 5.2 77 98-181 4-80 (88)
353 2dnl_A Cytoplasmic polyadenyla 99.6 7.1E-16 2.4E-20 113.2 8.0 79 200-279 6-99 (114)
354 1wf0_A TDP-43, TAR DNA-binding 99.6 2.9E-16 1E-20 109.8 5.6 77 201-283 4-80 (88)
355 2bz2_A Negative elongation fac 99.6 1.4E-15 4.7E-20 112.8 9.4 75 200-282 37-112 (121)
356 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.8E-20 106.5 7.2 71 201-277 5-86 (87)
357 3u1l_A PRE-mRNA-splicing facto 99.6 2.3E-15 8E-20 123.6 8.9 79 96-180 131-230 (240)
358 2dit_A HIV TAT specific factor 99.6 9.6E-15 3.3E-19 106.8 10.2 80 200-283 13-104 (112)
359 3v4m_A Splicing factor U2AF 65 99.6 5.9E-15 2E-19 106.4 8.1 81 200-280 3-96 (105)
360 3u1l_A PRE-mRNA-splicing facto 99.6 5.5E-15 1.9E-19 121.4 8.3 77 200-282 132-230 (240)
361 2dit_A HIV TAT specific factor 99.6 2.4E-14 8.1E-19 104.7 10.9 81 96-180 12-103 (112)
362 3ue2_A Poly(U)-binding-splicin 99.6 1.4E-14 4.6E-19 106.5 8.6 79 201-279 19-107 (118)
363 3v4m_A Splicing factor U2AF 65 99.5 1.2E-14 4.1E-19 104.8 7.9 80 98-177 4-95 (105)
364 3ue2_A Poly(U)-binding-splicin 99.5 2.6E-14 9E-19 105.0 8.4 80 98-177 19-107 (118)
365 1jmt_A Splicing factor U2AF 35 99.5 2.9E-15 1E-19 107.9 3.0 72 104-176 20-103 (104)
366 1jmt_A Splicing factor U2AF 35 99.5 4.4E-15 1.5E-19 106.9 3.3 71 207-278 20-103 (104)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 6.3E-13 2.1E-17 94.6 9.4 65 212-283 27-92 (100)
368 2d9o_A DNAJ (HSP40) homolog, s 99.4 1E-12 3.6E-17 93.4 10.5 74 100-180 11-91 (100)
369 3s6e_A RNA-binding protein 39; 99.4 6.2E-13 2.1E-17 97.0 8.1 76 201-280 6-92 (114)
370 3s6e_A RNA-binding protein 39; 99.4 1.6E-12 5.3E-17 94.8 9.0 79 97-179 5-93 (114)
371 3tht_A Alkylated DNA repair pr 99.4 6.7E-13 2.3E-17 114.7 7.9 76 96-177 15-97 (345)
372 3tht_A Alkylated DNA repair pr 99.4 1.1E-12 3.9E-17 113.3 8.4 75 199-279 15-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 1.6E-11 5.5E-16 84.1 8.0 74 200-281 5-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 5.2E-11 1.8E-15 86.9 9.5 77 95-177 14-94 (121)
375 1owx_A Lupus LA protein, SS-B, 99.2 1.6E-10 5.5E-15 84.3 9.3 75 198-278 14-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 9.4E-11 3.2E-15 80.3 6.8 73 98-179 6-86 (91)
377 3dxb_A Thioredoxin N-terminall 99.0 4.9E-10 1.7E-14 91.6 8.5 66 214-279 141-211 (222)
378 1ufw_A Synaptojanin 2; RNP dom 99.0 2.9E-10 9.9E-15 78.2 5.0 73 200-280 13-94 (95)
379 3dxb_A Thioredoxin N-terminall 99.0 7.5E-10 2.6E-14 90.5 8.5 66 112-177 142-211 (222)
380 2l9w_A U4/U6 snRNA-associated- 99.0 1.2E-09 4E-14 76.6 6.3 70 201-276 20-95 (117)
381 1ufw_A Synaptojanin 2; RNP dom 98.9 3.3E-10 1.1E-14 77.9 2.9 72 97-177 13-93 (95)
382 2l9w_A U4/U6 snRNA-associated- 98.6 1.1E-07 3.7E-12 66.7 7.3 73 98-176 20-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.3 8.2E-06 2.8E-10 56.8 10.4 87 99-215 8-99 (104)
384 1wey_A Calcipressin 1; structu 97.9 1.3E-05 4.4E-10 56.0 4.9 74 201-280 4-83 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.9 0.0001 3.5E-09 51.3 9.2 74 201-282 7-85 (104)
386 1uw4_A UPF3X; nonsense mediate 97.8 6.9E-05 2.4E-09 51.4 7.4 68 100-167 2-71 (91)
387 1wey_A Calcipressin 1; structu 97.8 5.5E-05 1.9E-09 52.8 6.9 74 99-178 5-83 (104)
388 1wwh_A Nucleoporin 35, nucleop 97.6 0.00028 9.6E-09 50.7 7.8 71 202-279 24-95 (119)
389 1whv_A Poly(A)-specific ribonu 97.6 0.0005 1.7E-08 47.2 8.4 57 97-162 14-70 (100)
390 1uw4_A UPF3X; nonsense mediate 97.3 0.0012 4E-08 45.3 7.4 68 203-270 2-72 (91)
391 1wwh_A Nucleoporin 35, nucleop 97.1 0.0024 8.1E-08 45.8 7.6 72 99-178 24-96 (119)
392 2l08_A Regulator of nonsense t 97.1 0.00055 1.9E-08 47.2 4.0 69 99-167 9-79 (97)
393 3ctr_A Poly(A)-specific ribonu 97.0 0.0011 3.9E-08 45.6 4.8 54 100-162 7-60 (101)
394 1whv_A Poly(A)-specific ribonu 96.8 0.0043 1.5E-07 42.6 6.4 52 202-262 16-67 (100)
395 3p3d_A Nucleoporin 53; structu 96.6 0.0014 4.9E-08 47.7 3.4 77 202-279 7-97 (132)
396 3ctr_A Poly(A)-specific ribonu 96.5 0.0043 1.5E-07 42.7 4.9 51 203-262 7-57 (101)
397 3p3d_A Nucleoporin 53; structu 96.0 0.0042 1.4E-07 45.2 3.0 76 100-177 8-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 95.8 0.0048 1.6E-07 55.1 3.1 62 201-268 52-113 (464)
399 2l08_A Regulator of nonsense t 95.8 0.01 3.4E-07 40.9 4.0 69 202-270 9-80 (97)
400 3pq1_A Poly(A) RNA polymerase; 95.6 0.0053 1.8E-07 54.8 2.8 54 99-158 53-106 (464)
401 3d45_A Poly(A)-specific ribonu 86.7 1.5 5.1E-05 39.7 7.0 56 98-162 439-494 (507)
402 3d45_A Poly(A)-specific ribonu 77.2 5.1 0.00018 36.2 6.8 54 202-264 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 53.8 39 0.0013 21.3 6.0 67 101-176 2-74 (76)
404 4e8u_A Putative uncharacterize 43.2 1E+02 0.0036 23.2 7.7 55 204-261 14-80 (172)
405 4e8u_A Putative uncharacterize 40.3 67 0.0023 24.3 5.8 51 100-153 13-74 (172)
406 2i9x_A Putative septation prot 31.8 70 0.0024 21.1 4.2 26 228-253 5-30 (87)
407 4eyt_A Telomerase associated p 29.8 1.2E+02 0.0042 20.0 8.0 53 201-261 11-63 (129)
408 2ia9_A Putative septation prot 27.1 91 0.0031 21.2 4.2 26 228-253 5-30 (100)
409 2i9z_A Putative septation prot 26.6 95 0.0033 21.3 4.3 26 228-253 5-30 (105)
410 1ytr_A Bacteriocin plantaricin 23.6 43 0.0015 15.9 1.4 12 113-124 14-25 (26)
411 3fut_A Dimethyladenosine trans 23.1 62 0.0021 26.3 3.3 32 100-132 111-142 (271)
412 1xn9_A 30S ribosomal protein S 20.2 2.1E+02 0.0072 19.4 5.1 49 109-158 28-81 (101)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=5.5e-38 Score=254.15 Aligned_cols=177 Identities=21% Similarity=0.368 Sum_probs=153.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeee
Confidence 34456899999999999999999999999999999999999899999999999999999999995 49999999999999
Q ss_pred EcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCH
Q 023297 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254 (284)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 254 (284)
++........ .......++|||+|||..+++++|+++|++||.|..|.++.+..+|.++|||||+|.+.
T Consensus 88 ~~~~~~~~~~-----------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 88 RAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp ECCC----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cccCcccccc-----------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 9865433211 11123458999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHhCCCccCCceEEEEeccCCCC
Q 023297 255 AERDAALSLNGTDFRGRTIIVREGVDRTE 283 (284)
Q Consensus 255 ~~A~~a~~l~g~~~~g~~l~v~~a~~k~~ 283 (284)
++|.+|+..+|..++|+.|.|.|+.++.+
T Consensus 157 ~~A~~A~~~~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 157 DSVDKIVIQKYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp HHHHHHHHCSCCEETTEECEEEECC----
T ss_pred HHHHHHHHhCCcEECCEEEEEEecCChhH
Confidence 99999997689999999999999999875
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.5e-38 Score=259.84 Aligned_cols=169 Identities=24% Similarity=0.411 Sum_probs=153.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.+.++|||+|||+++++++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHH
Q 023297 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (284)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 256 (284)
....... ....++|||+|||+.+++++|+++|++||.|..|+|+++. +.++|||||+|.+.++
T Consensus 93 ~~~~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~ 155 (213)
T 4f02_A 93 QRDPSLR---------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEA 155 (213)
T ss_dssp CCCTHHH---------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHH
T ss_pred ccccccc---------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHH
Confidence 6432211 1234689999999999999999999999999999999985 4479999999999999
Q ss_pred HHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 257 RDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 257 A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
|.+|+ .|||..|+|+.|+|.|+.++.
T Consensus 156 a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 156 AERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 99999 699999999999999998764
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.8e-37 Score=265.51 Aligned_cols=211 Identities=17% Similarity=0.187 Sum_probs=187.8
Q ss_pred cCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEE
Q 023297 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (284)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 129 (284)
.+.+||+||.+.+.+++..+.+.+++....+....... ....++|||+|||.++++++|+++|+.||.|..+
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~--------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~ 125 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL--------QPTDALLCVANLPPSLTQQQFEELVRPFGSLERC 125 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE--------CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe--------cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEE
Confidence 56789999999999999999999999886665443321 2245899999999999999999999999999999
Q ss_pred EEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEcC
Q 023297 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209 (284)
Q Consensus 130 ~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 209 (284)
+++.+..+|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.++....... .....++|||+|
T Consensus 126 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~--------------~~~~~~~l~v~n 191 (284)
T 3smz_A 126 FLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP--------------ALLHSRCLCVDR 191 (284)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT--------------TTTSCSEEEEEC
T ss_pred EEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc--------------ccCCccEEEEec
Confidence 999998899999999999999999999999999999999999999996543211 113468899999
Q ss_pred CCCCC-CHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCCC
Q 023297 210 LSWAV-KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTE 283 (284)
Q Consensus 210 l~~~~-~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~~ 283 (284)
||..+ ++++|+++|++||.|..+.|+++. +|.++|+|||+|.+.++|.+|+ .|||..++|+.|+|.|+.++.+
T Consensus 192 lp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 192 LPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 99995 999999999999999999999987 7999999999999999999999 6999999999999999998864
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.3e-37 Score=241.80 Aligned_cols=163 Identities=25% Similarity=0.451 Sum_probs=152.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||.++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 48999999999999999999999999999999999988999999999999999999999999999999999999999864
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 258 (284)
... ....++|||+|||..+++++|+++|++||.|..+.++++..+|.++|||||+|.+.++|.
T Consensus 83 ~~~-----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 83 GGE-----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CSS-----------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Ccc-----------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 322 134588999999999999999999999999999999999889999999999999999999
Q ss_pred HHH-HhCCCccCC--ceEEEEec
Q 023297 259 AAL-SLNGTDFRG--RTIIVREG 278 (284)
Q Consensus 259 ~a~-~l~g~~~~g--~~l~v~~a 278 (284)
+|+ .|||..+.| ++|+|+||
T Consensus 146 ~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEecCCCeEEEEEeC
Confidence 999 699999988 99999986
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.4e-37 Score=241.10 Aligned_cols=165 Identities=23% Similarity=0.435 Sum_probs=151.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
++|||+|||.++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999985 4889999999999999999999999999999999999998644
Q ss_pred CcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHH
Q 023297 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259 (284)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 259 (284)
.. ......++|||+|||..+++++|+++|++||.|..+.++++..+|.++|||||+|.+.++|.+
T Consensus 80 ~~---------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 80 QQ---------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp CC---------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CC---------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 32 112346889999999999999999999999999999999998899999999999999999999
Q ss_pred HH-HhCCCccCCceEEEEeccC
Q 023297 260 AL-SLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 260 a~-~l~g~~~~g~~l~v~~a~~ 280 (284)
|+ .|||..++|+.|+|.||+.
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 99 6999999999999999863
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.5e-36 Score=239.25 Aligned_cols=163 Identities=27% Similarity=0.464 Sum_probs=151.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 48999999999999999999999999999999999988999999999999999999999999999999999999999864
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 258 (284)
... ....++|||+|||..+++++|+++|++||.|..+.++++..+|.++|||||+|.+.++|.
T Consensus 82 ~~~-----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 144 (167)
T 1fxl_A 82 SSA-----------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 144 (167)
T ss_dssp CCG-----------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Ccc-----------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHH
Confidence 321 123578999999999999999999999999999999999889999999999999999999
Q ss_pred HHH-HhCCCccCCce--EEEEec
Q 023297 259 AAL-SLNGTDFRGRT--IIVREG 278 (284)
Q Consensus 259 ~a~-~l~g~~~~g~~--l~v~~a 278 (284)
+|+ .|||..+.|+. |+|.||
T Consensus 145 ~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 145 EAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCccCCCccceEEEeC
Confidence 999 69999999975 999886
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4.1e-37 Score=252.73 Aligned_cols=178 Identities=20% Similarity=0.355 Sum_probs=155.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||.++++++|+++|++||.|.+++++.+..+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 47999999999999999999999999999999999988899999999999999999999999999999999999988765
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 258 (284)
.......... ........++|||+|||..+++++|+++|++||.|..+.++++..+|+++|||||+|.+.++|.
T Consensus 108 ~~~~~~~~~~------~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 108 IGQAQPIIDQ------LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp CGGGHHHHHH------HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ccccchhhhh------hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 4322111100 0011234589999999999999999999999999999999999889999999999999999999
Q ss_pred HHH-HhCCCccCCceEEEEeccCCC
Q 023297 259 AAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 259 ~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
+|+ .|||..|+|+.|+|.|+.++.
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHccCCEeCCcEEEEEEecCCC
Confidence 999 699999999999999999875
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.1e-37 Score=244.44 Aligned_cols=165 Identities=24% Similarity=0.513 Sum_probs=152.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||.++++++|+++|++||.|.++++++++.+|.++|||||+|.+.++|.+|++ ++..++|+.|.|.++..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccccc
Confidence 4899999999999999999999999999999999998899999999999999999999997 46788999999988754
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 258 (284)
... ....++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.
T Consensus 81 ~~~-----------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 81 RDE-----------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 143 (167)
T ss_dssp HHH-----------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHH
T ss_pred hhh-----------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 321 123478999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHhCCCccCCceEEEEeccCCC
Q 023297 259 AALSLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 259 ~a~~l~g~~~~g~~l~v~~a~~k~ 282 (284)
+|++++|..++|+.|+|.|+.+|.
T Consensus 144 ~A~~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 144 RVCQNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHHCSEECSSSSCEEEEECCCCC
T ss_pred HHHhCCCEEeCCeEEEEeecCCCC
Confidence 999999999999999999999874
No 9
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1e-36 Score=261.90 Aligned_cols=210 Identities=18% Similarity=0.259 Sum_probs=174.2
Q ss_pred CcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCC-ceEEEE
Q 023297 52 PAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFG-TVLSVE 130 (284)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~ 130 (284)
.+||+||.+.+.+++..+.+ +++....+...... ....++|||+|||..+++++|+++|++|| .|..++
T Consensus 80 ~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~---------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~ 149 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS---------HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIR 149 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE---------ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEE
T ss_pred CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE---------ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEE
Confidence 47999999999999999994 78776665544321 12468999999999999999999999999 999999
Q ss_pred EEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEcCC
Q 023297 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210 (284)
Q Consensus 131 ~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 210 (284)
++.+.. |.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+.....+. .......++|||+||
T Consensus 150 i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~----------~~~~~~~~~l~v~nl 218 (292)
T 2ghp_A 150 LPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT----------DSATLEGREIMIRNL 218 (292)
T ss_dssp CC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------CCTTTEEEEEEE
T ss_pred EEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc----------cccCCCCceEEEECC
Confidence 998855 889999999999999999999999999999999999998754432221 112245689999999
Q ss_pred CCC-CCHHHHHHhhccCCceEEEEEeecCC-CCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccCCC
Q 023297 211 SWA-VKPEDLRNHFGRFGTVVSARVLHDRK-GQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 211 ~~~-~~~~~l~~~f~~~G~v~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~k~ 282 (284)
|.. +++++|+++|++||.|..|.++++.. +|.++|||||+|.+.++|.+|+.|||..|+|+.|+|.|+.+|.
T Consensus 219 p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 219 STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCCC
T ss_pred CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCCC
Confidence 999 99999999999999999999999875 4999999999999999999999999999999999999999874
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=5.4e-35 Score=232.14 Aligned_cols=165 Identities=22% Similarity=0.410 Sum_probs=147.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCCCC---CceeE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG--ISRGCGYLTMGSINSAKNAIIALDGSDVG---GREMR 172 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 172 (284)
+.++|||+|||+++++++|+++|++||.|.+++++.++.+| +++|||||+|.+.++|.+|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35899999999999999999999999999999999998776 89999999999999999999999998875 67788
Q ss_pred EEEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeC
Q 023297 173 VRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252 (284)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~ 252 (284)
+.++...... ....++|||+|||..+++++|+++|++||.|..+.++++. +|.++|||||+|.
T Consensus 82 ~~~~~~~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKNN----------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCCS----------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred Eccccccccc----------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEEC
Confidence 8777543221 1234789999999999999999999999999999999996 6899999999999
Q ss_pred CHHHHHHHH-HhCCCccC---CceEEEEecc
Q 023297 253 SDAERDAAL-SLNGTDFR---GRTIIVREGV 279 (284)
Q Consensus 253 ~~~~A~~a~-~l~g~~~~---g~~l~v~~a~ 279 (284)
+.++|.+|+ .|||..+. |+.|.|.||.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999 79999876 4999999984
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=4.5e-34 Score=231.44 Aligned_cols=179 Identities=21% Similarity=0.396 Sum_probs=150.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC----C-------ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPF----G-------TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (284)
..++|||+|||+++++++|+++|++| | .|.++.+ +.++|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 35899999999999999999999999 4 5555555 446899999999999999999 8999999
Q ss_pred CCceeEEEEcccCCcccccccccCC---CCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCc
Q 023297 167 GGREMRVRFSIDMNSRTRNAEALIS---PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243 (284)
Q Consensus 167 ~g~~l~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~ 243 (284)
.|+.|.|.++............... ...........++|||+|||..+++++|+++|++||.|..+.+.++..+|.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 9999999998765432221111000 0111122356799999999999999999999999999999999999889999
Q ss_pred ceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCCC
Q 023297 244 RVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTE 283 (284)
Q Consensus 244 ~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~~ 283 (284)
+|||||+|.+.++|.+|+ .|||..++|+.|+|.|+.++..
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999 6999999999999999998764
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.7e-34 Score=227.59 Aligned_cols=158 Identities=22% Similarity=0.472 Sum_probs=143.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC----C-------ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPF----G-------TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (284)
+.++|||+|||+++++++|+++|++| | .|.++++.. ++|||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 34899999999999999999999999 6 677776654 4899999999999999999 9999999
Q ss_pred CCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceE
Q 023297 167 GGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246 (284)
Q Consensus 167 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~ 246 (284)
.|+.|.|.++...... ...++|||+|||..+++++|+++|++||.|..+.+.++..+|.++||
T Consensus 76 ~g~~i~v~~~~~~~~~-----------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL-----------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TTEECEEECCSSCCCC-----------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred cCceeeecCCcccCCC-----------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 9999999987543211 22588999999999999999999999999999999999889999999
Q ss_pred EEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 247 GFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 247 afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
|||+|.+.++|.+|+ .|||..++|+.|.|.||.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999 699999999999999983
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=4e-35 Score=233.20 Aligned_cols=166 Identities=20% Similarity=0.333 Sum_probs=144.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|.+||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 3445699999999999999999999999998766 33444467889999999999999999999 599999999999999
Q ss_pred EcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCH
Q 023297 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254 (284)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 254 (284)
++...... .....++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.
T Consensus 87 ~~~~~~~~---------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~ 146 (175)
T 1fje_B 87 KPKGRDSK---------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSE 146 (175)
T ss_dssp CCCCSSCS---------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSH
T ss_pred cCCCcccc---------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCH
Confidence 98754321 11245899999999999999999999999988766 45788999999999999
Q ss_pred HHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 255 AERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 255 ~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
++|.+|+ .|||..++|+.|+|.|+.+|.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 147 ADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 9999999 699999999999999999874
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=7.9e-34 Score=231.12 Aligned_cols=174 Identities=17% Similarity=0.214 Sum_probs=141.9
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 98 RPCELYVCNLP-RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 98 ~~~~l~v~nl~-~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
+.++|||+||| ..+++++|+++|++||.|.+|+++.+ .+|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45899999999 89999999999999999999999875 3799999999999999999999999999999999998
Q ss_pred ccCCcccccc----------cccCCCCC----------CccccCCCcEEEEcCCCCCCCHHHHHHhhccCCce--EEEEE
Q 023297 177 IDMNSRTRNA----------EALISPPK----------KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTV--VSARV 234 (284)
Q Consensus 177 ~~~~~~~~~~----------~~~~~~~~----------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v--~~v~i 234 (284)
.......... ........ ......+.++|||+|||+.+++++|+++|++||.| ..+++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6433211000 00000000 00112356789999999999999999999999998 89999
Q ss_pred eecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCc----eEEEEec
Q 023297 235 LHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR----TIIVREG 278 (284)
Q Consensus 235 ~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~----~l~v~~a 278 (284)
+.+. +.++|+|||+|.+.++|.+|+ .|||..+.|+ ++.|+|+
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8775 556799999999999999999 7999999887 4666664
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=5e-33 Score=237.70 Aligned_cols=175 Identities=21% Similarity=0.351 Sum_probs=145.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 97 ARPCELYVCNLPRSFDISELL----EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
...++|||+|||.++++++|+ ++|++||.|.+|++.+ +|+++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 446899999999999999976 8999999999999876 588999999999999999999999999999999999
Q ss_pred EEEcccCCcccccccccC--------------------------------------------------------------
Q 023297 173 VRFSIDMNSRTRNAEALI-------------------------------------------------------------- 190 (284)
Q Consensus 173 v~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 190 (284)
|.++..............
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 999865442100000000
Q ss_pred --------------------------------CCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecC
Q 023297 191 --------------------------------SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR 238 (284)
Q Consensus 191 --------------------------------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~ 238 (284)
............++|||+|||..+++++|+++|++||.|.+|++..++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 000000122356889999999999999999999999999999998654
Q ss_pred CCCCcceEEEEEeCCHHHHHHHH-HhCCCccC-CceEEEEecc
Q 023297 239 KGQTTRVFGFISFSSDAERDAAL-SLNGTDFR-GRTIIVREGV 279 (284)
Q Consensus 239 ~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~-g~~l~v~~a~ 279 (284)
+|||||+|.+.++|.+|+ .|||..+. |+.|+|.|++
T Consensus 244 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 -----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 579999999999999999 69999999 9999999986
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=7.1e-33 Score=229.77 Aligned_cols=176 Identities=23% Similarity=0.300 Sum_probs=146.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 96 RARPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 96 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
....++|||+|||. ++++++|+++|++||.|.+++++.+. +|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34568999999999 99999999999999999999999874 7899999999999999999999999999999999
Q ss_pred EcccCCcccccccc---------------cCCCC---CCccccCCCcEEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEe
Q 023297 175 FSIDMNSRTRNAEA---------------LISPP---KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVL 235 (284)
Q Consensus 175 ~~~~~~~~~~~~~~---------------~~~~~---~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~i~ 235 (284)
++............ ....+ .......+.++|||+|||..+++++|+++|++|| .|..+.++
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~ 185 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF 185 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE
Confidence 98754221111000 00000 0001123468999999999999999999999999 99999996
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccC-CceEEEEeccCC
Q 023297 236 HDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR-GRTIIVREGVDR 281 (284)
Q Consensus 236 ~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~-g~~l~v~~a~~k 281 (284)
.+ .+|||||+|.+.++|.+|+ .|||..+. |+.|+|.|++++
T Consensus 186 ~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 186 QK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp SS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 53 3679999999999999999 69999999 999999999875
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=5.6e-33 Score=225.24 Aligned_cols=173 Identities=22% Similarity=0.284 Sum_probs=144.9
Q ss_pred CCeEEEcCCCC-CCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 99 PCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 99 ~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
.++|||+|||. ++++++|+++|++||.|.+++++.+. +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 48999999999 99999999999999999999998863 7899999999999999999999999999999999987
Q ss_pred cCCcccccccc---------------c---CCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEeecC
Q 023297 178 DMNSRTRNAEA---------------L---ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVLHDR 238 (284)
Q Consensus 178 ~~~~~~~~~~~---------------~---~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~i~~~~ 238 (284)
........... . ...........+.++|||+|||..+++++|+++|++|| .|..+.+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~ 157 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 157 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC
Confidence 54321111000 0 00000011124578999999999999999999999999 99999997642
Q ss_pred CCCCcceEEEEEeCCHHHHHHHH-HhCCCccC-CceEEEEeccCC
Q 023297 239 KGQTTRVFGFISFSSDAERDAAL-SLNGTDFR-GRTIIVREGVDR 281 (284)
Q Consensus 239 ~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~-g~~l~v~~a~~k 281 (284)
+|+|||+|.+.++|.+|+ .|||..++ |+.|+|.|++++
T Consensus 158 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 158 -----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp -----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred -----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 689999999999999999 69999999 999999999875
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.2e-32 Score=232.94 Aligned_cols=155 Identities=18% Similarity=0.266 Sum_probs=145.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||.++++++|+++|+.|| |.++.+ ++++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 348999999999999999999999999 989887 4568999999999999999999999999999999999853
Q ss_pred cCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHH
Q 023297 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257 (284)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A 257 (284)
..++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|
T Consensus 94 -----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 94 -----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp -----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred -----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 237899999999999999999999999999999999998999999999999999999
Q ss_pred HHHH-HhCCCccCCceEEEEeccCCC
Q 023297 258 DAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 258 ~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
.+|+ .|||..++|+.|.|.|+.++.
T Consensus 151 ~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 151 ARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp HHHHHHHTTCEETTEECEEEECCGGG
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 9999 799999999999999998764
No 19
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=3.2e-32 Score=230.14 Aligned_cols=157 Identities=29% Similarity=0.431 Sum_probs=143.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||+++|+++|+++|+.||.|.+|.+.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 44568999999999999999999999999999999965 379999999999999999999999999999999999
Q ss_pred cccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHH
Q 023297 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255 (284)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 255 (284)
+.+ .++|||+|||..+++++|+++|..||.|..|.++.+ .+|.++|||||+|.+.+
T Consensus 93 a~~-----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~ 148 (261)
T 3sde_A 93 ATH-----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKP 148 (261)
T ss_dssp CCC-----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHH
T ss_pred ccc-----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHH
Confidence 852 468999999999999999999999999999999999 48999999999999999
Q ss_pred HHHHHH-HhCC-CccC---CceEEEEeccCCC
Q 023297 256 ERDAAL-SLNG-TDFR---GRTIIVREGVDRT 282 (284)
Q Consensus 256 ~A~~a~-~l~g-~~~~---g~~l~v~~a~~k~ 282 (284)
+|.+|+ .||+ ..+. |+.|.|.++.+..
T Consensus 149 ~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 149 PARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 999999 6855 4444 9999999998654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=7.1e-32 Score=231.66 Aligned_cols=161 Identities=20% Similarity=0.325 Sum_probs=139.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
......++|||+|||.++++++|+++|+.||.|.+|+++.+..+ ++|||||+|.+.++|.+|+ .++|..+.|+.|.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEE
Confidence 34456799999999999999999999999999999999998643 5899999999999999999 59999999999999
Q ss_pred EEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEeecCCCCCcceEEEEEeC
Q 023297 174 RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFS 252 (284)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~ 252 (284)
.++. .++|||+|||..+++++|+++|.+|| .|..|.++.+.. |.++|||||+|.
T Consensus 113 ~~~~------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~ 167 (292)
T 2ghp_A 113 SHLT------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVT 167 (292)
T ss_dssp EECC------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECS
T ss_pred EECC------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEEC
Confidence 9862 48899999999999999999999999 999999999874 889999999999
Q ss_pred CHHHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 253 SDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 253 ~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
+.++|.+|+ .|||..+.|+.|.|.|+.++.
T Consensus 168 ~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 168 SKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred CHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 999999999 599999999999999998764
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=5.1e-25 Score=172.02 Aligned_cols=149 Identities=18% Similarity=0.229 Sum_probs=114.3
Q ss_pred EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEE
Q 023297 128 SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207 (284)
Q Consensus 128 ~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 207 (284)
.++|+.+. ++++|||||+|.+.++|++|++.+++....+..+.+........... ..............++|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE----GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC----CCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc----cccccccccCCCCCCEEEE
Confidence 46677764 36899999999999999999988876443333333322111000000 0001111122244689999
Q ss_pred cCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 208 ~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
+|||+.+++++|+++|++||.|..|.|+++..+|.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+.++.
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 999999999999999999999999999999889999999999999999999999 699999999999999998764
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=9.8e-24 Score=163.27 Aligned_cols=138 Identities=19% Similarity=0.224 Sum_probs=114.0
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCCCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCH
Q 023297 138 GISRGCGYLTMGSINSAKNAIIAL-DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216 (284)
Q Consensus 138 ~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 216 (284)
...+|+++|+|.+.++|++|++.+ ||..++| .+.+.++........... ..............++|||+|||+.+++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH-HHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS-SCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc-cccccccccCCCCCCEEEEeCCCCCCCH
Confidence 567899999999999999999999 9999999 999988754322111100 0111122223356799999999999999
Q ss_pred HHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 217 ~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
++|+++|++||.|..|+++++ ++|||||+|.+.++|..|+ .|||..+.|+.|+|.|+.++.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999876 5889999999999999999 699999999999999999875
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.90 E-value=6.6e-24 Score=156.71 Aligned_cols=109 Identities=22% Similarity=0.336 Sum_probs=75.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||+++++++|+++|++||.|.+++|+.+. +.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999984 55899999999999999999999999999999999999875
Q ss_pred CCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHH
Q 023297 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 218 (284)
+......... .....++|||+|||..+|++-
T Consensus 83 ~~~~~~~~~~---------~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGA---------RAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-------------------------------------
T ss_pred cccccccccc---------ccCCCCceEeCCCCCCccccc
Confidence 5432221111 112346799999999998763
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=9e-23 Score=146.33 Aligned_cols=82 Identities=26% Similarity=0.428 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.++++|||+|||+++|+++|+++|++||.|.++++++++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 023297 177 ID 178 (284)
Q Consensus 177 ~~ 178 (284)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 25
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=1.5e-22 Score=157.92 Aligned_cols=131 Identities=24% Similarity=0.246 Sum_probs=106.6
Q ss_pred CCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcC-----------CCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHh
Q 023297 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVD-----------DDSSVEEPRSRARPCELYVCNLPRSFDISELLEM 119 (284)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 119 (284)
..+||+||.+.+.+++..+...+++.....+.... ..............++|||+|||+++++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 46899999999999999998887653322221110 0111112223345789999999999999999999
Q ss_pred hccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCc
Q 023297 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181 (284)
Q Consensus 120 f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 181 (284)
|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++.+...
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999988999999999999999999999999999999999999999976543
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=142.92 Aligned_cols=80 Identities=25% Similarity=0.463 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
.+++|||+|||..+++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|+ .|||..++|+.|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4578999999999999999999999999999999999999999999999999999999999 699999999999999998
Q ss_pred C
Q 023297 280 D 280 (284)
Q Consensus 280 ~ 280 (284)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 27
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9.4e-22 Score=154.08 Aligned_cols=128 Identities=25% Similarity=0.347 Sum_probs=112.8
Q ss_pred cCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEE
Q 023297 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (284)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 129 (284)
+.++||+||.+.+.+++..+...+++....+...................++|||+|||..+++++|+++|++||.|.++
T Consensus 38 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 117 (166)
T 3md3_A 38 NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSG 117 (166)
T ss_dssp -CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEE
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEE
Confidence 45789999999999999999999999887766554433333334455667899999999999999999999999999999
Q ss_pred EEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 130 ~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
.++.+..+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++.
T Consensus 118 ~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 118 HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999998899999999999999999999999999999999999999985
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=2.9e-21 Score=141.12 Aligned_cols=85 Identities=21% Similarity=0.240 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.+.++|||+|||+++++++|+++|++||.|.+++|+.|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 023297 177 IDMNS 181 (284)
Q Consensus 177 ~~~~~ 181 (284)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 65443
No 29
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.85 E-value=1.7e-20 Score=153.43 Aligned_cols=133 Identities=22% Similarity=0.330 Sum_probs=111.9
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCC---------CCCCCCCeEEEcCCCCCCCHHHHHHh
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEP---------RSRARPCELYVCNLPRSFDISELLEM 119 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~v~nl~~~~t~~~l~~~ 119 (284)
.+.++||+||.+.+.+++..+.+.+++....+............. ......++|||+|||.++++++|+++
T Consensus 66 ~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~ 145 (216)
T 2qfj_A 66 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSV 145 (216)
T ss_dssp C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHH
T ss_pred CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHH
Confidence 345789999999999999999999999887766654322111110 11245689999999999999999999
Q ss_pred hccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCc
Q 023297 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181 (284)
Q Consensus 120 f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 181 (284)
|++||.|..++++.+..+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++.....
T Consensus 146 f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 146 FEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 99999999999999988999999999999999999999999999999999999999976543
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=5.3e-22 Score=140.11 Aligned_cols=83 Identities=17% Similarity=0.286 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC-CCCCCCceeEEEEc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD-GSDVGGREMRVRFS 176 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~~ 176 (284)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|.+|++.++ +..++|+.|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 37899999999999999999999999 79999999999999999999999999999999998774 56799999999999
Q ss_pred ccCCc
Q 023297 177 IDMNS 181 (284)
Q Consensus 177 ~~~~~ 181 (284)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 76543
No 31
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.84 E-value=1e-20 Score=149.15 Aligned_cols=124 Identities=18% Similarity=0.313 Sum_probs=107.4
Q ss_pred cCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEE
Q 023297 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (284)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 129 (284)
.+++||+||.+.+.+++..+. .+++....+........ .........++|||+|||..+++++|+++|++||.|..+
T Consensus 48 ~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~--~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v 124 (172)
T 2g4b_A 48 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRP--HDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAF 124 (172)
T ss_dssp ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECC--SSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEE
T ss_pred cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCC--cccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEE
Confidence 345899999999999999999 89888766665433221 112233457899999999999999999999999999999
Q ss_pred EEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 130 ~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 125 ~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 125 NLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999889999999999999999999999999999999999999987
No 32
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=3.2e-20 Score=135.23 Aligned_cols=88 Identities=32% Similarity=0.548 Sum_probs=81.7
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcee
Q 023297 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (284)
Q Consensus 92 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (284)
........++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34445667999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEEcccC
Q 023297 172 RVRFSIDM 179 (284)
Q Consensus 172 ~v~~~~~~ 179 (284)
+|.++.++
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998754
No 33
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=136.97 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.+.++|||+||++.+++++|+++|++||.|.+|.|++|..+++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
..+.
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 7653
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=135.00 Aligned_cols=87 Identities=21% Similarity=0.394 Sum_probs=81.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34556999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.+...
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=131.87 Aligned_cols=85 Identities=28% Similarity=0.518 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||.++++++|+++|++||.|.+++++.++.+++++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 023297 177 IDMNS 181 (284)
Q Consensus 177 ~~~~~ 181 (284)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76544
No 36
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=4.5e-21 Score=136.05 Aligned_cols=80 Identities=15% Similarity=0.349 Sum_probs=74.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCc--eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC----CCCceeE
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGT--VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD----VGGREMR 172 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~--i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----~~g~~l~ 172 (284)
-.+|||+|||+++|+++|+++|++||. |.+|++++|+.+|+++|||||+|.+.++|.+|++.|||.. ++|+.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 378999999999999999999999995 6799999999999999999999999999999999999974 8999999
Q ss_pred EEEccc
Q 023297 173 VRFSID 178 (284)
Q Consensus 173 v~~~~~ 178 (284)
|.++..
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999863
No 37
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.7e-20 Score=130.00 Aligned_cols=80 Identities=33% Similarity=0.557 Sum_probs=77.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999754
No 38
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=3.2e-21 Score=157.81 Aligned_cols=130 Identities=21% Similarity=0.230 Sum_probs=109.0
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 128 (284)
..+++||+||.+.+.+++..+.+.+++....+...................++|||+|||+.+++++|+++|++||.|..
T Consensus 53 tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 132 (213)
T 4f02_A 53 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 132 (213)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred CCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEE
Confidence 45678999999999999999999999887766554332222222222334578999999999999999999999999999
Q ss_pred EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCC
Q 023297 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180 (284)
Q Consensus 129 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 180 (284)
++|+.+. +.++|||||+|.+.++|.+|++.|||..++|+.|+|.++.++.
T Consensus 133 ~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 133 CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred EEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999874 5589999999999999999999999999999999999997654
No 39
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=131.84 Aligned_cols=82 Identities=26% Similarity=0.497 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||.++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred cC
Q 023297 178 DM 179 (284)
Q Consensus 178 ~~ 179 (284)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 43
No 40
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.1e-20 Score=132.54 Aligned_cols=85 Identities=26% Similarity=0.433 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++ |++..++|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999998899999999999999999999997 999999999999999
Q ss_pred cccCCc
Q 023297 176 SIDMNS 181 (284)
Q Consensus 176 ~~~~~~ 181 (284)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 976544
No 41
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=135.03 Aligned_cols=87 Identities=28% Similarity=0.396 Sum_probs=81.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|++|++.|||..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9975543
No 42
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=4.6e-20 Score=136.00 Aligned_cols=88 Identities=24% Similarity=0.470 Sum_probs=82.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||..+++++|+++|++||.|..|+|+.++.+|.++|||||+|.+.++|++|++.|+|..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44566899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 023297 175 FSIDMNSR 182 (284)
Q Consensus 175 ~~~~~~~~ 182 (284)
++..+...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99866544
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=135.57 Aligned_cols=85 Identities=16% Similarity=0.340 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 023297 176 SIDMN 180 (284)
Q Consensus 176 ~~~~~ 180 (284)
+..+.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97543
No 44
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.84 E-value=1.7e-20 Score=151.32 Aligned_cols=130 Identities=17% Similarity=0.256 Sum_probs=107.8
Q ss_pred cCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCc------------------cCCCCCCCCCeEEEcCCCCCC
Q 023297 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSV------------------EEPRSRARPCELYVCNLPRSF 111 (284)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~v~nl~~~~ 111 (284)
.+++||+||.+.+.+++..+. .+++....+.......... .........++|||+|||..+
T Consensus 48 ~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 126 (198)
T 2yh0_A 48 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYL 126 (198)
T ss_dssp ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTC
T ss_pred cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCC
Confidence 456899999999999999999 8888765444322111100 011122567999999999999
Q ss_pred CHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCC
Q 023297 112 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180 (284)
Q Consensus 112 t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 180 (284)
++++|+++|++||.|..+.+..++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.+..
T Consensus 127 ~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 127 NDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp CHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999998899999999999999999999999999999999999999997543
No 45
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=132.55 Aligned_cols=85 Identities=25% Similarity=0.418 Sum_probs=79.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE--------EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 023297 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS--------VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164 (284)
Q Consensus 93 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 164 (284)
.......++|||+|||.++++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|.+|++.|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345566799999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred CCCCceeEEEEcc
Q 023297 165 DVGGREMRVRFSI 177 (284)
Q Consensus 165 ~~~g~~l~v~~~~ 177 (284)
.++|+.|+|.++.
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999873
No 46
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.83 E-value=4.3e-20 Score=144.96 Aligned_cols=126 Identities=21% Similarity=0.311 Sum_probs=108.1
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 128 (284)
.+.++||+||.+.+.+++..+.+.+++....+........ .........++|||+|||..+++++|+++|++||.|..
T Consensus 41 ~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~--~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 118 (168)
T 1b7f_A 41 TGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA--RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQ 118 (168)
T ss_dssp TTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC--CCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEE
T ss_pred CCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec--CCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEE
Confidence 3457899999999999999999999988776554433211 11223345689999999999999999999999999999
Q ss_pred EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC--ceeEEEEc
Q 023297 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFS 176 (284)
Q Consensus 129 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 176 (284)
+.++.+..+|.++|||||+|.+.++|.+|++.|||..+.| ++|+|.++
T Consensus 119 ~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 119 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999998889999999999999999999999999999987 99999885
No 47
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=4.3e-20 Score=136.16 Aligned_cols=88 Identities=28% Similarity=0.565 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
......++|||+|||.++++++|+++|++||.|.+++|+.++.++.++|||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34445689999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCc
Q 023297 174 RFSIDMNS 181 (284)
Q Consensus 174 ~~~~~~~~ 181 (284)
.++.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99976544
No 48
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=5.8e-21 Score=144.76 Aligned_cols=123 Identities=21% Similarity=0.362 Sum_probs=79.8
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHH
Q 023297 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221 (284)
Q Consensus 142 g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 221 (284)
-+.|++|.+...+..|+..++|....|+.- ..+.. + .......++|||+|||..+++++|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~--------------~---~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR--------------P---PPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp -------------------------------CCSCC--------------S---CSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC--------------C---CCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 367899999999999999999877665531 11110 0 11123458899999999999999999
Q ss_pred hhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 222 ~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
+|++||.|..|.++.+..+++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|++++.
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999889999999999999999999999 699999999999999998764
No 49
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-20 Score=132.08 Aligned_cols=85 Identities=25% Similarity=0.389 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EcccCC
Q 023297 175 FSIDMN 180 (284)
Q Consensus 175 ~~~~~~ 180 (284)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 997543
No 50
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=7e-20 Score=133.42 Aligned_cols=85 Identities=33% Similarity=0.607 Sum_probs=81.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 199 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
....++|||+|||..+++++|+++|++||.|..|.++++..+|+++|||||+|.+.++|.+|+ .|||..++|+.|+|.|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356689999999999999999999999999999999999889999999999999999999999 6999999999999999
Q ss_pred ccCCCC
Q 023297 278 GVDRTE 283 (284)
Q Consensus 278 a~~k~~ 283 (284)
+++++|
T Consensus 103 a~~k~d 108 (108)
T 2jrs_A 103 VTERTD 108 (108)
T ss_dssp SCSSCC
T ss_pred cccCCC
Confidence 999875
No 51
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=133.02 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.+.++|||+|||.++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 023297 177 IDMNS 181 (284)
Q Consensus 177 ~~~~~ 181 (284)
.....
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 86544
No 52
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.5e-20 Score=133.78 Aligned_cols=88 Identities=25% Similarity=0.362 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
......++|||+|||.++++++|+++|++||.|..++++.++.++.++|||||+|.+.++|.+|++.|++..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456699999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcccCCc
Q 023297 174 RFSIDMNS 181 (284)
Q Consensus 174 ~~~~~~~~ 181 (284)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99976543
No 53
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.83 E-value=2.1e-20 Score=146.81 Aligned_cols=137 Identities=14% Similarity=0.168 Sum_probs=79.5
Q ss_pred EEeCCHHHHHHHHHHhCCCCCC--CceeEEEEcccCCccccccc---ccCCCCCCccccCCCcEEEEcCCCCCCCHHHHH
Q 023297 146 LTMGSINSAKNAIIALDGSDVG--GREMRVRFSIDMNSRTRNAE---ALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220 (284)
Q Consensus 146 v~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 220 (284)
.+|.+.++|+.++..|++.... |+.+...+........-... ...............++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999987665 66666665322111000000 000011112223456899999999999999999
Q ss_pred HhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCC
Q 023297 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRT 282 (284)
Q Consensus 221 ~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~ 282 (284)
++|.+||.|..|.|+.+..+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.|+.++.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 99999999999999999889999999999999999999999 699999999999999998764
No 54
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=5e-21 Score=134.88 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=72.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCC--ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFG--TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
.+|||+|||+++++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999997
Q ss_pred cCC
Q 023297 178 DMN 180 (284)
Q Consensus 178 ~~~ 180 (284)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 543
No 55
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-21 Score=136.91 Aligned_cols=81 Identities=15% Similarity=0.310 Sum_probs=75.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-Hh-CCCccCCceEEEEecc
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL-NGTDFRGRTIIVREGV 279 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l-~g~~~~g~~l~v~~a~ 279 (284)
++|||+|||..+++++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|.+|+ .+ ++..++|++|+|.|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 7999999999999999999999999999999999 56 5668999999999999
Q ss_pred CCCC
Q 023297 280 DRTE 283 (284)
Q Consensus 280 ~k~~ 283 (284)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 56
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=1.1e-20 Score=139.46 Aligned_cols=105 Identities=25% Similarity=0.370 Sum_probs=92.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||..+++++|+++|++||.|.++.++.+ +.++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999876 55699999999999999999999999999999999999
Q ss_pred cccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCCHHHHHHhhccCCc
Q 023297 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT 228 (284)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 228 (284)
+.+.... .+++....+++|+++|++||.
T Consensus 82 a~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF-------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT-------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh-------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 9643221 456677889999999999985
No 57
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=8.1e-21 Score=134.74 Aligned_cols=81 Identities=20% Similarity=0.319 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc--eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCc----cCCce
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT--VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD----FRGRT 272 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~----~~g~~ 272 (284)
...++|||+|||+.+++++|+++|++||. +.+|++++|+.+|+++|||||+|.+.++|.+|+ .|||.. ++|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45689999999999999999999999995 679999999999999999999999999999999 699974 89999
Q ss_pred EEEEeccC
Q 023297 273 IIVREGVD 280 (284)
Q Consensus 273 l~v~~a~~ 280 (284)
|.|.||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999985
No 58
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.6e-20 Score=131.83 Aligned_cols=85 Identities=29% Similarity=0.475 Sum_probs=79.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
...+.++|||+|||+++++++|+++|++||.|..++++.+ +|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3446689999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9976554
No 59
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.2e-20 Score=130.06 Aligned_cols=81 Identities=27% Similarity=0.418 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 023297 177 I 177 (284)
Q Consensus 177 ~ 177 (284)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 60
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=5.9e-20 Score=127.28 Aligned_cols=80 Identities=33% Similarity=0.598 Sum_probs=77.3
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCC
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k 281 (284)
.+|||+|||..+++++|+++|++||.|..+.++++..+++++|||||+|.+.++|.+|+ .|||..++|+.|+|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 57999999999999999999999999999999999889999999999999999999999 69999999999999999987
Q ss_pred C
Q 023297 282 T 282 (284)
Q Consensus 282 ~ 282 (284)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 61
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.8e-20 Score=133.28 Aligned_cols=88 Identities=24% Similarity=0.434 Sum_probs=81.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeC-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCCCCCcee
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN-PETGISRGCGYLTMGSINSAKNAIIAL-DGSDVGGREM 171 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l 171 (284)
......++|||+|||..+++++|+++|++||.|..|+++.+ ..+|.++|||||+|.+.++|.+|++.| ++..+.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456699999999999999999999999999999999998 678999999999999999999999999 9999999999
Q ss_pred EEEEcccCCc
Q 023297 172 RVRFSIDMNS 181 (284)
Q Consensus 172 ~v~~~~~~~~ 181 (284)
+|.++.....
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999976544
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=3.2e-20 Score=132.33 Aligned_cols=83 Identities=20% Similarity=0.476 Sum_probs=79.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||.++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CCc
Q 023297 179 MNS 181 (284)
Q Consensus 179 ~~~ 181 (284)
...
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 554
No 63
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.6e-20 Score=130.10 Aligned_cols=84 Identities=30% Similarity=0.546 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 34689999999999999999999999999999999999889999999999999999999999 59999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++.+
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 98865
No 64
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=1.3e-19 Score=131.43 Aligned_cols=85 Identities=31% Similarity=0.526 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC---ceeEE
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG---REMRV 173 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g---~~l~v 173 (284)
...++|||+|||.++++++|+++|++||.|.+++|+.++ +|.++|||||+|.+.++|.+|++.|+|..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456999999999999999999999999999999999996 79999999999999999999999999999988 99999
Q ss_pred EEcccCCcc
Q 023297 174 RFSIDMNSR 182 (284)
Q Consensus 174 ~~~~~~~~~ 182 (284)
.++......
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999865543
No 65
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.4e-20 Score=131.22 Aligned_cols=84 Identities=27% Similarity=0.532 Sum_probs=80.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||..+++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|++|||..+.|+.|+|.|+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCC
Q 023297 280 DRTE 283 (284)
Q Consensus 280 ~k~~ 283 (284)
++..
T Consensus 88 ~~~~ 91 (99)
T 2dgs_A 88 PRDS 91 (99)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8865
No 66
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=131.03 Aligned_cols=82 Identities=26% Similarity=0.492 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 44568999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred cc
Q 023297 176 SI 177 (284)
Q Consensus 176 ~~ 177 (284)
+.
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 67
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=132.94 Aligned_cols=86 Identities=30% Similarity=0.512 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
..+.++|||+|||.++++++|+++|++||.|..++++.++.++.++|||||+|.+.++|.+|++.||+..++|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccCCc
Q 023297 176 SIDMNS 181 (284)
Q Consensus 176 ~~~~~~ 181 (284)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 976544
No 68
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.1e-20 Score=134.44 Aligned_cols=87 Identities=22% Similarity=0.429 Sum_probs=81.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC------CCCCCC
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD------GSDVGG 168 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------~~~~~g 168 (284)
.....++|||+|||+++++++|+++|++||.|.+|+|+.++.+|.++|||||+|.+.++|.+|++.|+ +..++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34556899999999999999999999999999999999999899999999999999999999999999 999999
Q ss_pred ceeEEEEcccCCc
Q 023297 169 REMRVRFSIDMNS 181 (284)
Q Consensus 169 ~~l~v~~~~~~~~ 181 (284)
+.|+|.++.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999976544
No 69
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=130.57 Aligned_cols=84 Identities=19% Similarity=0.402 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.+..+. +++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456889999999999999999999999999999999998 8999999999999999999999 79999999999999999
Q ss_pred cCCCCC
Q 023297 279 VDRTES 284 (284)
Q Consensus 279 ~~k~~~ 284 (284)
.++.++
T Consensus 94 ~~~~~~ 99 (100)
T 2do4_A 94 NSGPSS 99 (100)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 998764
No 70
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=5.1e-20 Score=128.79 Aligned_cols=81 Identities=26% Similarity=0.480 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
+.++|||+|||..+++++|+++|++||.|..+.++++..++.++|||||+|.+.++|.+|+ .|||..++|+.|+|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4589999999999999999999999999999999999889999999999999999999999 699999999999999998
Q ss_pred CC
Q 023297 280 DR 281 (284)
Q Consensus 280 ~k 281 (284)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 76
No 71
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.82 E-value=7.7e-20 Score=144.43 Aligned_cols=125 Identities=20% Similarity=0.354 Sum_probs=104.3
Q ss_pred CCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCC--CCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE
Q 023297 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDD--DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128 (284)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 128 (284)
.++||+||.+.+.+++..+.+.+++....+...... .............++|||+|||..+++++|+++|++||.|.+
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 124 (175)
T 3nmr_A 45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEE 124 (175)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEE
Confidence 678999999999999999999999877654322211 111222223446789999999999999999999999999999
Q ss_pred EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC---CceeEEEEc
Q 023297 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG---GREMRVRFS 176 (284)
Q Consensus 129 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~~ 176 (284)
+.++.+. +|.++|||||+|.+.++|.+|++.|||..+. |++|+|.|+
T Consensus 125 v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 125 CRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 9999985 5999999999999999999999999998776 499999987
No 72
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.82 E-value=2.4e-20 Score=147.63 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=106.4
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 128 (284)
.+.++||+||.+.+.+++..+. ++++....+...................++|||+|||.++++++|+++|++||.|..
T Consensus 50 ~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~ 128 (175)
T 1fje_B 50 TGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRL 128 (175)
T ss_dssp EETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEE
T ss_pred CCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEE
Confidence 4567899999999999999999 599887776655444333334445556789999999999999999999999998876
Q ss_pred EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 129 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
+ ..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.++
T Consensus 129 ~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 129 V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp E-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred e-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 5 467899999999999999999999999999999999999999754
No 73
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1e-20 Score=135.94 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=77.7
Q ss_pred CCeEEEcCCCC------CCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC-cee
Q 023297 99 PCELYVCNLPR------SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG-REM 171 (284)
Q Consensus 99 ~~~l~v~nl~~------~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~l 171 (284)
.++|||+|||+ ++++++|+++|++||.|.+++|+.++.+|+++|||||+|.+.++|.+|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 48999999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEcccC
Q 023297 172 RVRFSIDM 179 (284)
Q Consensus 172 ~v~~~~~~ 179 (284)
+|.++.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999753
No 74
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=131.46 Aligned_cols=83 Identities=24% Similarity=0.388 Sum_probs=78.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++.|||..++|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred Ecc
Q 023297 175 FSI 177 (284)
Q Consensus 175 ~~~ 177 (284)
++.
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 985
No 75
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=5.8e-20 Score=143.94 Aligned_cols=126 Identities=23% Similarity=0.411 Sum_probs=106.6
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 128 (284)
.+.++||+||.+.+.+++..+.+.+++....+......... ........++|||+|||..+++++|+++|++||.|..
T Consensus 40 ~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~--~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 117 (167)
T 1fxl_A 40 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 117 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC--CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeE
Confidence 34578999999999999999999999987766544332111 1122335689999999999999999999999999999
Q ss_pred EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCce--eEEEEc
Q 023297 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE--MRVRFS 176 (284)
Q Consensus 129 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~--l~v~~~ 176 (284)
++++.+..+|.++|||||+|.+.++|.+|++.|||..+.|+. |+|.||
T Consensus 118 ~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 118 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999888999999999999999999999999999999965 888775
No 76
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.2e-20 Score=143.04 Aligned_cols=124 Identities=22% Similarity=0.248 Sum_probs=83.5
Q ss_pred eEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeC
Q 023297 55 FRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134 (284)
Q Consensus 55 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~ 134 (284)
+.+..+.+...+..+...+++....+..... ....+......++|||+|||.++++++|+++|++||.|..+.++.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~---~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 82 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMS---YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 82 (135)
T ss_dssp -----------------------------CC---SCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCC---cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 3455556666667777777766554444332 2223344456789999999999999999999999999999999999
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCc
Q 023297 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181 (284)
Q Consensus 135 ~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 181 (284)
+.+++++|||||+|.+.++|++|++.|+|..+.|+.|+|.++.+...
T Consensus 83 ~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 83 RYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp SSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 88899999999999999999999999999999999999999975443
No 77
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=3.8e-20 Score=135.32 Aligned_cols=86 Identities=20% Similarity=0.353 Sum_probs=80.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||..+++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCC
Q 023297 175 FSIDMN 180 (284)
Q Consensus 175 ~~~~~~ 180 (284)
++..+.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997654
No 78
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=133.92 Aligned_cols=85 Identities=27% Similarity=0.407 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||.++++++|+++|++||.|.+++++.++.++.++|||||+|.+.++|.+|++.|++..++|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 023297 177 IDMNS 181 (284)
Q Consensus 177 ~~~~~ 181 (284)
.+...
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76544
No 79
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=5.2e-20 Score=133.67 Aligned_cols=88 Identities=25% Similarity=0.442 Sum_probs=81.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC---CCce
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV---GGRE 170 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~ 170 (284)
......++|||+|||.++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|++.|++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3445668999999999999999999999999999999999988999999999999999999999999999987 8999
Q ss_pred eEEEEcccCCc
Q 023297 171 MRVRFSIDMNS 181 (284)
Q Consensus 171 l~v~~~~~~~~ 181 (284)
|+|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999976544
No 80
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=134.22 Aligned_cols=84 Identities=24% Similarity=0.391 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||.++++++|+++|++||.|.++.++.+. +|.++|||||+|.+.++|++|++.|+|..++|+.|+|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 445899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 023297 177 IDMNS 181 (284)
Q Consensus 177 ~~~~~ 181 (284)
.....
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76554
No 81
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=131.08 Aligned_cols=84 Identities=23% Similarity=0.362 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++++..++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45699999999999999999999999999999999999889999999999999999999999 59999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 82
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=132.41 Aligned_cols=84 Identities=26% Similarity=0.559 Sum_probs=79.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEE-EEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSV-EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
..++|||+|||.++++++|+++|++||.|..+ +++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45899999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 023297 177 IDMNS 181 (284)
Q Consensus 177 ~~~~~ 181 (284)
.++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 76543
No 83
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.82 E-value=6.9e-20 Score=137.68 Aligned_cols=86 Identities=27% Similarity=0.446 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|++|++.|+|..++|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCC
Q 023297 175 FSIDMN 180 (284)
Q Consensus 175 ~~~~~~ 180 (284)
++.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997643
No 84
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=3.5e-20 Score=143.23 Aligned_cols=123 Identities=28% Similarity=0.312 Sum_probs=101.8
Q ss_pred CCcceEEEEeecchhhhHHHHhh-cCCCCCCCCCcCCCCC--------------ccCCCCCCCCCeEEEcCCCCCCCHHH
Q 023297 51 HPAGFRSVLAVVDEEAVVVEDEI-NGKDNVGGNEVDDDSS--------------VEEPRSRARPCELYVCNLPRSFDISE 115 (284)
Q Consensus 51 ~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~v~nl~~~~t~~~ 115 (284)
.-+|++.+.+.+.+++..+.+.+ |+....+ ....+... ..........++|||+|||+++++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 45688888899999999999988 7776655 22211111 12233445679999999999999999
Q ss_pred HHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 116 l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
|+++|++||.|.+++++.+ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.++
T Consensus 90 l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999876 5899999999999999999999999999999999999654
No 85
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=7.8e-20 Score=130.34 Aligned_cols=82 Identities=17% Similarity=0.373 Sum_probs=78.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~ 280 (284)
.++|||+|||..+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|.|+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 578999999999999999999999999999999999889999999999999999999999 6999999999999999998
Q ss_pred CCC
Q 023297 281 RTE 283 (284)
Q Consensus 281 k~~ 283 (284)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 753
No 86
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=133.78 Aligned_cols=100 Identities=27% Similarity=0.395 Sum_probs=83.7
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
++|||+|||.++++++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+|++.|+|..++|+.|+|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999886 6899999999999999999999999999999999999865
Q ss_pred CcccccccccCCCCCCccccCCCcEEEEcCCC
Q 023297 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211 (284)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 211 (284)
.......... .......+|||+||+
T Consensus 76 ~~~~~~~~~~-------~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPP-------ARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCC-------CSCCCCSCCCSCCCC
T ss_pred CCcccCCCCC-------ccccCCCceecCCCC
Confidence 5332211111 111345779999987
No 87
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=1.4e-19 Score=130.75 Aligned_cols=85 Identities=27% Similarity=0.457 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++|| |.+|+++.++.+|+++|||||+|.+.++|.+|+ .|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 344568999999999999999999999997 999999999989999999999999999999999 999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9976543
No 88
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.5e-20 Score=132.22 Aligned_cols=81 Identities=20% Similarity=0.361 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||+++|+++|+++|++||.|.+|.|+.++. |.++|||||+|.+.++|.+|++ +++..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3458999999999999999999999999999999999977 9999999999999999999996 9999999999999998
Q ss_pred ccC
Q 023297 177 IDM 179 (284)
Q Consensus 177 ~~~ 179 (284)
.+.
T Consensus 87 ~~~ 89 (103)
T 1s79_A 87 DDY 89 (103)
T ss_dssp HHH
T ss_pred hHH
Confidence 754
No 89
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=7.7e-20 Score=134.78 Aligned_cols=80 Identities=24% Similarity=0.529 Sum_probs=74.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~ 280 (284)
..+|||+|||+.+++++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+|+ +|||..+.|+.|+|.++.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999985 448999999999999999999 6999999999999999988
Q ss_pred CCC
Q 023297 281 RTE 283 (284)
Q Consensus 281 k~~ 283 (284)
+.+
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 90
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=130.26 Aligned_cols=84 Identities=25% Similarity=0.422 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34689999999999999999999999999999999999889999999999999999999999 79999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++.+
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 98865
No 91
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6e-20 Score=131.43 Aligned_cols=84 Identities=25% Similarity=0.380 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE---TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
+.++|||+|||.++++++|+++|++||.|..++++.++. ++.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 458999999999999999999999999999999998876 56899999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.....
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9976543
No 92
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.1e-19 Score=133.98 Aligned_cols=84 Identities=27% Similarity=0.475 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|+|+++..+++++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999989999999999999999999999 79999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 98765
No 93
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1e-19 Score=127.29 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|.+|+ .+++..++|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEE
Confidence 3445689999999999999999999999999999999999889999999999999999999999 568888999999998
Q ss_pred Ec
Q 023297 175 FS 176 (284)
Q Consensus 175 ~~ 176 (284)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 94
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.81 E-value=2.7e-19 Score=131.82 Aligned_cols=85 Identities=26% Similarity=0.490 Sum_probs=80.1
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 199 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
....++|||+|||..+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999999889999999999999999999999 6999999999999999
Q ss_pred ccCCCC
Q 023297 278 GVDRTE 283 (284)
Q Consensus 278 a~~k~~ 283 (284)
+.++..
T Consensus 92 a~~~~~ 97 (115)
T 2dgo_A 92 ATRKPP 97 (115)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 988753
No 95
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=130.70 Aligned_cols=84 Identities=25% Similarity=0.394 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999 59999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 98765
No 96
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=130.79 Aligned_cols=85 Identities=21% Similarity=0.481 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET-GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
....++|||+|||+++++++|+++|++|| |.+++|+.++.+ |+++|||||+|.+.++|.+|+ .|++..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34568999999999999999999999999 999999999887 999999999999999999999 999999999999999
Q ss_pred EcccCCcc
Q 023297 175 FSIDMNSR 182 (284)
Q Consensus 175 ~~~~~~~~ 182 (284)
++..+...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99765543
No 97
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=2.3e-20 Score=131.49 Aligned_cols=81 Identities=21% Similarity=0.453 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCC--ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFG--TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
.+|||+|||+.+++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 9999999999999999999999999999999999 699999999999999998
Q ss_pred CCCC
Q 023297 280 DRTE 283 (284)
Q Consensus 280 ~k~~ 283 (284)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 8753
No 98
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=3.1e-19 Score=128.91 Aligned_cols=83 Identities=24% Similarity=0.434 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||+.+++++|+++|++|| |..|.++++..+++++|||||+|.+.++|.+|++|||..+.|+.|+|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 4568999999999999999999999997 999999999989999999999999999999999999999999999999999
Q ss_pred CCCC
Q 023297 280 DRTE 283 (284)
Q Consensus 280 ~k~~ 283 (284)
++..
T Consensus 92 ~~~~ 95 (103)
T 2dng_A 92 GRKQ 95 (103)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 99
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=7.5e-20 Score=135.50 Aligned_cols=81 Identities=31% Similarity=0.635 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34458999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred c
Q 023297 176 S 176 (284)
Q Consensus 176 ~ 176 (284)
+
T Consensus 117 a 117 (118)
T 2khc_A 117 K 117 (118)
T ss_dssp C
T ss_pred c
Confidence 7
No 100
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=8.7e-20 Score=130.82 Aligned_cols=83 Identities=19% Similarity=0.408 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceE-EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCce----e
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVL-SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE----M 171 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~-~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~----l 171 (284)
...++|||+|||.++++++|+++|++||.|. +++++.++.+|.++|||||+|.+.++|++|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3568999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEEcccC
Q 023297 172 RVRFSIDM 179 (284)
Q Consensus 172 ~v~~~~~~ 179 (284)
+|.++.+.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999754
No 101
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=4.3e-19 Score=128.58 Aligned_cols=83 Identities=28% Similarity=0.430 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCC---ceEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG---RTIIV 275 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g---~~l~v 275 (284)
...++|||+|||..+++++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+ .|||..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999999999999999998 7999999999999999999999 699999988 99999
Q ss_pred EeccCCCC
Q 023297 276 REGVDRTE 283 (284)
Q Consensus 276 ~~a~~k~~ 283 (284)
.|+.++.+
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99998765
No 102
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1e-19 Score=126.66 Aligned_cols=80 Identities=29% Similarity=0.454 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.+.++|||+|||..+++++|+++|++||.|..+.++++..+++++|||||+|.+.++|.+|+ .|||..++|+.|+|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999999889999999999999999999999 79999999999999998
Q ss_pred c
Q 023297 279 V 279 (284)
Q Consensus 279 ~ 279 (284)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 103
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=7.9e-20 Score=128.06 Aligned_cols=82 Identities=18% Similarity=0.445 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI-SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
..++|||+|||.++++++|+++|++||.|.++.++.+..++. ++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 358999999999999999999999999999999999877765 9999999999999999999999999999999999999
Q ss_pred ccC
Q 023297 177 IDM 179 (284)
Q Consensus 177 ~~~ 179 (284)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 104
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=130.84 Aligned_cols=85 Identities=25% Similarity=0.412 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhcc-CCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-CCCceeEEE
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKP-FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD-VGGREMRVR 174 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~l~v~ 174 (284)
...++|||+|||.++++++|+++|++ ||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|++.. ++|+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45689999999999999999999999 9999999999997 89999999999999999999999999999 999999999
Q ss_pred EcccCCcc
Q 023297 175 FSIDMNSR 182 (284)
Q Consensus 175 ~~~~~~~~ 182 (284)
++......
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99765443
No 105
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=133.64 Aligned_cols=87 Identities=24% Similarity=0.398 Sum_probs=80.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceE--------EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVL--------SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (284)
.....++|||+|||.++++++|+++|++||.|. .++++.++.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344569999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCceeEEEEcccCCc
Q 023297 167 GGREMRVRFSIDMNS 181 (284)
Q Consensus 167 ~g~~l~v~~~~~~~~ 181 (284)
.|+.|+|.++..+..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999976544
No 106
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.81 E-value=1.3e-19 Score=145.93 Aligned_cols=131 Identities=17% Similarity=0.277 Sum_probs=100.5
Q ss_pred cCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCC----CccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCc
Q 023297 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS----SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGT 125 (284)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 125 (284)
+.++||+||.+.+.+++..+.+. ++....+........ ...........++|||+|||.++++++|+++|++||.
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~ 130 (196)
T 1l3k_A 52 KRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 130 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSC
T ss_pred CCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCC
Confidence 45789999999999999999876 544433333221110 1111222345689999999999999999999999999
Q ss_pred eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccCCcc
Q 023297 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182 (284)
Q Consensus 126 i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 182 (284)
|..+.++.+..+|.++|||||+|.+.++|.+|++. +|..++|+.|.|.++.++...
T Consensus 131 i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 131 IEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred eEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 99999999988999999999999999999999965 899999999999999866543
No 107
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=130.07 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|.+|+ .|||..++|+.|+|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999989999999999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 88753
No 108
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=1.8e-19 Score=134.96 Aligned_cols=88 Identities=16% Similarity=0.326 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||..+++++|+++|++||.|.+|.|+.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 023297 175 FSIDMNSR 182 (284)
Q Consensus 175 ~~~~~~~~ 182 (284)
++......
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99765543
No 109
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-19 Score=127.87 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS--------ARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
...++|||+|||..+++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|.+|+ .|||..++|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45689999999999999999999999999999 999999889999999999999999999999 699999999
Q ss_pred ceEEEEecc
Q 023297 271 RTIIVREGV 279 (284)
Q Consensus 271 ~~l~v~~a~ 279 (284)
+.|+|.||+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999984
No 110
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-20 Score=134.65 Aligned_cols=84 Identities=25% Similarity=0.450 Sum_probs=79.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||..+++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 48999999999999999999999999999999999988999999999999999999999999999999999999999976
Q ss_pred CCcc
Q 023297 179 MNSR 182 (284)
Q Consensus 179 ~~~~ 182 (284)
....
T Consensus 88 ~~~~ 91 (104)
T 1p1t_A 88 EKNK 91 (104)
T ss_dssp TTHH
T ss_pred ccch
Confidence 5543
No 111
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.80 E-value=3.4e-20 Score=145.48 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=101.1
Q ss_pred CcCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE
Q 023297 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128 (284)
Q Consensus 49 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~ 128 (284)
.+.++||+||.+.+.+++..+... +....+....... ..........++|||+|||.++++++|+++|++||.|.+
T Consensus 41 ~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~--~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~ 116 (167)
T 2cjk_A 41 TGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKR--AIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIID 116 (167)
T ss_dssp TSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEE--CCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSE
T ss_pred CCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccc--ccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEE
Confidence 456889999999999999999885 1112221111110 001111224579999999999999999999999999999
Q ss_pred EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 129 ~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
+.++.++.+|.++|||||+|.+.++|.+|++ ++|..++|+.|.|.++.++
T Consensus 117 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 117 AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999998889999999999999999999996 8999999999999999754
No 112
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-19 Score=127.87 Aligned_cols=82 Identities=34% Similarity=0.541 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||+.+++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999998 8899999999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++.+
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98765
No 113
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=127.56 Aligned_cols=86 Identities=33% Similarity=0.476 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
......++|||+|||.++++++|+++|++||.|..++|+.+.. .++|||||+|.+.++|.+|++.|++..++|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3445569999999999999999999999999999999998853 38999999999999999999999999999999999
Q ss_pred EEcccCCc
Q 023297 174 RFSIDMNS 181 (284)
Q Consensus 174 ~~~~~~~~ 181 (284)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99976543
No 114
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=127.32 Aligned_cols=81 Identities=26% Similarity=0.421 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.+.++|||+|||..+++++|+++|++||.|..|.++++..++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45688999999999999999999999999999999999988999999999999999999999 69999999999999999
Q ss_pred cC
Q 023297 279 VD 280 (284)
Q Consensus 279 ~~ 280 (284)
++
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 115
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=131.44 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=79.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|.+++|+.++.+++++|||||+|.+.++|++|++.+++ .+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 344568999999999999999999999999999999999988999999999999999999999999998 8999999999
Q ss_pred EcccCC
Q 023297 175 FSIDMN 180 (284)
Q Consensus 175 ~~~~~~ 180 (284)
++....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997543
No 116
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=1.8e-19 Score=126.52 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||.++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|+ .|+|..+.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 379999999999999999999999999999999999889999999999999999999999 9999999999999999865
Q ss_pred C
Q 023297 179 M 179 (284)
Q Consensus 179 ~ 179 (284)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 117
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=130.61 Aligned_cols=84 Identities=23% Similarity=0.403 Sum_probs=79.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhC------CCccCCce
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN------GTDFRGRT 272 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~------g~~~~g~~ 272 (284)
...++|||+|||+.+++++|+++|.+||.|..|.|+++..++.++|||||+|.+.++|.+|+ .|| |..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 45689999999999999999999999999999999999989999999999999999999999 699 99999999
Q ss_pred EEEEeccCCCC
Q 023297 273 IIVREGVDRTE 283 (284)
Q Consensus 273 l~v~~a~~k~~ 283 (284)
|+|.|+.++.+
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999998865
No 118
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=129.55 Aligned_cols=83 Identities=23% Similarity=0.456 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 45689999999999999999999999999999999999988999999999999999999999 59999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
+++.
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8764
No 119
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.1e-20 Score=133.40 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=76.9
Q ss_pred CcEEEEcCCCC------CCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCC-ceE
Q 023297 202 PHKLYVGNLSW------AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG-RTI 273 (284)
Q Consensus 202 ~~~l~v~nl~~------~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g-~~l 273 (284)
.++|||+|||+ .+++++|+++|++||.|.+|+|+++..+|+++|||||+|.+.++|.+|+ .|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 58899999999 9999999999999999999999999989999999999999999999999 699999999 999
Q ss_pred EEEeccCC
Q 023297 274 IVREGVDR 281 (284)
Q Consensus 274 ~v~~a~~k 281 (284)
+|.++.++
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999875
No 120
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=137.35 Aligned_cols=85 Identities=19% Similarity=0.389 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE--EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----CCCCc
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLS--VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS----DVGGR 169 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g~ 169 (284)
....++|||+|||+++++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|++.|||. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345689999999999999999999999999976 99999998999999999999999 999999999999 99999
Q ss_pred eeEEEEcccCCc
Q 023297 170 EMRVRFSIDMNS 181 (284)
Q Consensus 170 ~l~v~~~~~~~~ 181 (284)
.|+|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 121
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=129.10 Aligned_cols=83 Identities=22% Similarity=0.407 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG-QTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a 278 (284)
.+.++|||+|||+.+++++|+++|++|| |..|.|+++..+ ++++|||||+|.+.++|.+|+.|||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 4568999999999999999999999999 999999999887 99999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++.+
T Consensus 92 ~~~~~ 96 (104)
T 1wi8_A 92 DQAQD 96 (104)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98864
No 122
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=129.58 Aligned_cols=84 Identities=24% Similarity=0.491 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEE-EEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA-RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
.+.++|||+|||..+++++|+++|++||.|..+ .++++..++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346899999999999999999999999999999 99999889999999999999999999999 5999999999999999
Q ss_pred ccCCCC
Q 023297 278 GVDRTE 283 (284)
Q Consensus 278 a~~k~~ 283 (284)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 988764
No 123
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=129.04 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||..+++++|+++|++||.|.+++++.++. |.++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34558999999999999999999999999999999999975 99999999999999999999999999999999999998
Q ss_pred cc
Q 023297 176 SI 177 (284)
Q Consensus 176 ~~ 177 (284)
+.
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 124
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=129.18 Aligned_cols=84 Identities=21% Similarity=0.474 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeec-CCCCCcceEEEEEeCCHHHHHHHH-Hh-CCCccCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD-RKGQTTRVFGFISFSSDAERDAAL-SL-NGTDFRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~a~-~l-~g~~~~g~~l~v~ 276 (284)
...++|||+|||..+++++|+++|++||.|..|.++++ ..++.++|||||+|.+.++|.+|+ .| ||..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 45689999999999999999999999999999999999 789999999999999999999999 69 9999999999999
Q ss_pred eccCCCC
Q 023297 277 EGVDRTE 283 (284)
Q Consensus 277 ~a~~k~~ 283 (284)
|+.++..
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9998764
No 125
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=129.94 Aligned_cols=84 Identities=30% Similarity=0.597 Sum_probs=79.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++++..++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999 79999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 98764
No 126
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=6.1e-20 Score=124.68 Aligned_cols=75 Identities=16% Similarity=0.312 Sum_probs=71.9
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 101 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
+|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++ |++..++|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999995 9999999999999875
No 127
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-20 Score=128.33 Aligned_cols=80 Identities=21% Similarity=0.387 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||.++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999988765
No 128
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=140.34 Aligned_cols=81 Identities=21% Similarity=0.349 Sum_probs=77.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCC--ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFG--TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
.++|||+|||+++++++|+++|++|| .|.+++++.|+.+|+++|||||+|.+.++|.+||+.|||..++|+.|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 48999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 023297 177 IDM 179 (284)
Q Consensus 177 ~~~ 179 (284)
.+.
T Consensus 135 ~~~ 137 (156)
T 3n9u_C 135 TRQ 137 (156)
T ss_dssp CHH
T ss_pred CCC
Confidence 654
No 129
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=3.6e-19 Score=125.80 Aligned_cols=82 Identities=30% Similarity=0.581 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||.++++++|+++|++||.|..++++.+ +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999884 7899999999999999999999999999999999999999
Q ss_pred ccCC
Q 023297 177 IDMN 180 (284)
Q Consensus 177 ~~~~ 180 (284)
.+..
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7544
No 130
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.3e-19 Score=128.73 Aligned_cols=84 Identities=25% Similarity=0.317 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.|.+++|+.++ +|+++|||||+|.+.++|.+|++.|++..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456899999999999999999999999999999999986 599999999999999999999999999999999999999
Q ss_pred cccCC
Q 023297 176 SIDMN 180 (284)
Q Consensus 176 ~~~~~ 180 (284)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 86543
No 131
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=2.8e-19 Score=130.00 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||..+++++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34456899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred Ecc
Q 023297 175 FSI 177 (284)
Q Consensus 175 ~~~ 177 (284)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 974
No 132
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=2.5e-19 Score=130.96 Aligned_cols=84 Identities=18% Similarity=0.335 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++.+..+|.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999889999999999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 88764
No 133
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=126.41 Aligned_cols=80 Identities=24% Similarity=0.480 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++.+..++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45689999999999999999999999999999999999988999999999999999999999 69999999999999998
Q ss_pred c
Q 023297 279 V 279 (284)
Q Consensus 279 ~ 279 (284)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 134
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=3.5e-19 Score=124.52 Aligned_cols=79 Identities=33% Similarity=0.601 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||+.+++++|+++|++||.|..+.++++..+|+++|||||+|.+.++|.+|++++|..+.|+.|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 4568999999999999999999999999999999999998999999999999999999999988899999999999986
No 135
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=130.24 Aligned_cols=84 Identities=27% Similarity=0.412 Sum_probs=79.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45689999999999999999999999999999999999889999999999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 136
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=6.5e-21 Score=171.28 Aligned_cols=83 Identities=19% Similarity=0.465 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.+.++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|| .|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999 79999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
.++.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8764
No 137
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=135.40 Aligned_cols=88 Identities=27% Similarity=0.439 Sum_probs=81.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCcc
Q 023297 175 FSIDMNSR 182 (284)
Q Consensus 175 ~~~~~~~~ 182 (284)
++......
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99865443
No 138
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=3.2e-19 Score=125.20 Aligned_cols=81 Identities=30% Similarity=0.525 Sum_probs=77.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccCC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~k 281 (284)
.++|||+|||..+++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+|+.|||..+.|+.|+|.+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred C
Q 023297 282 T 282 (284)
Q Consensus 282 ~ 282 (284)
.
T Consensus 86 ~ 86 (89)
T 3ucg_A 86 R 86 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 139
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=130.51 Aligned_cols=83 Identities=23% Similarity=0.410 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecC-CCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR-KGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++|| |..|.++++. .+|+++|||||+|.+.++|.+|+.|||..++|+.|+|.|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVA 95 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEec
Confidence 4569999999999999999999999999 9999999998 5899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
+++.+
T Consensus 96 ~~~~~ 100 (100)
T 2j76_E 96 DQAQD 100 (100)
T ss_dssp CCSCC
T ss_pred cCCCC
Confidence 98864
No 140
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=129.35 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|+|..++|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34589999999999999999999999999998888888889999999999999999999999999999999999999998
Q ss_pred ccC
Q 023297 177 IDM 179 (284)
Q Consensus 177 ~~~ 179 (284)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 643
No 141
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-19 Score=128.30 Aligned_cols=83 Identities=23% Similarity=0.447 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCC---CCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEE
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK---GQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~ 276 (284)
..++|||+|||+.+++++|+++|++||.|..|.+..+.. ++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 458899999999999999999999999999999999876 5589999999999999999999 599999999999999
Q ss_pred eccCCCC
Q 023297 277 EGVDRTE 283 (284)
Q Consensus 277 ~a~~k~~ 283 (284)
|+.++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9988754
No 142
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=127.93 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=77.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||..+++++|+++|++||.|.+|+++.+.. .++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 344569999999999999999999999999999999999853 378999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9976543
No 143
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=131.53 Aligned_cols=85 Identities=21% Similarity=0.338 Sum_probs=79.9
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCceE--------EEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccC
Q 023297 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVV--------SARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR 269 (284)
Q Consensus 199 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~ 269 (284)
....++|||+|||+.+++++|+++|++||.|. .|.|+.++.+++++|||||+|.+.++|.+|+ .|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 35679999999999999999999999999999 6999999889999999999999999999999 59999999
Q ss_pred CceEEEEeccCCCC
Q 023297 270 GRTIIVREGVDRTE 283 (284)
Q Consensus 270 g~~l~v~~a~~k~~ 283 (284)
|+.|+|.|++++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999998764
No 144
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=131.04 Aligned_cols=86 Identities=19% Similarity=0.300 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 344568999999999999999999999999999999999988999999999999999999999987 9999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9976543
No 145
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-18 Score=127.16 Aligned_cols=82 Identities=35% Similarity=0.599 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC--------C
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV--------G 167 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--------~ 167 (284)
....++|||+|||.++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4456899999999999999999999999999999999997 899999999999999999999999999999 5
Q ss_pred CceeEEEEccc
Q 023297 168 GREMRVRFSID 178 (284)
Q Consensus 168 g~~l~v~~~~~ 178 (284)
++.|.|.++.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999864
No 146
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=2.2e-19 Score=131.01 Aligned_cols=84 Identities=20% Similarity=0.362 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.++|.+|++.+ +..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345689999999999999999999999999999999999889999999999999999999999765 5889999999999
Q ss_pred cccCC
Q 023297 176 SIDMN 180 (284)
Q Consensus 176 ~~~~~ 180 (284)
+..+.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97544
No 147
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=124.08 Aligned_cols=76 Identities=22% Similarity=0.415 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
++|||+|||.++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++.++ ..++|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999998 9999999999987
No 148
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-19 Score=129.81 Aligned_cols=79 Identities=11% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
..++|||+|||+++++++|+++|++||.|..|.++++.. |.++|||||+|.+.++|.+|+.+||..++|+.|.|.|+.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 358899999999999999999999999999999999986 9999999999999999999999999999999999998764
No 149
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=125.21 Aligned_cols=83 Identities=18% Similarity=0.399 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCC-cceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT-TRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
..++|||+|||..+++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|.+|+ .|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 358899999999999999999999999999999999987665 8999999999999999999 59999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88764
No 150
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=132.24 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=77.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||.++++++|+++|++||.|.+++|+.++.+|.++|||||+|.+.++|.+|+ .|+|..++|+.|+|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3589999999999999999999999999999999999888999999999999999999999 999999999999999997
Q ss_pred cCC
Q 023297 178 DMN 180 (284)
Q Consensus 178 ~~~ 180 (284)
...
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 543
No 151
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=130.10 Aligned_cols=83 Identities=23% Similarity=0.488 Sum_probs=74.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP-ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
.....++|||+|||.++++++|+++|++|| |.+++++.+. .+|+++|||||+|.+.++|.+|+ .|+|..++|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345569999999999999999999999999 9999999987 58999999999999999999999 99999999999999
Q ss_pred EEcccC
Q 023297 174 RFSIDM 179 (284)
Q Consensus 174 ~~~~~~ 179 (284)
.++...
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999654
No 152
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=4.3e-19 Score=133.33 Aligned_cols=83 Identities=25% Similarity=0.431 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.+.++|||+|||..+++++|+++|++||.|..|.++++..+++++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999989999999999999999999999 69999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 9875
No 153
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=4e-19 Score=128.95 Aligned_cols=84 Identities=21% Similarity=0.373 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCcc---CCceEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF---RGRTIIV 275 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~---~g~~l~v 275 (284)
...++|||+|||..+++++|+++|++||.|..|.++.+..+++++|||||+|.+.++|.+|+ .|||..+ .|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 45689999999999999999999999999999999999989999999999999999999999 6999998 8999999
Q ss_pred EeccCCCC
Q 023297 276 REGVDRTE 283 (284)
Q Consensus 276 ~~a~~k~~ 283 (284)
.|+.++..
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99988754
No 154
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-19 Score=129.56 Aligned_cols=85 Identities=21% Similarity=0.265 Sum_probs=78.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEE-eCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCCCCceeEE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGT-VLSVEVS-RNPETGISRGCGYLTMGSINSAKNAIIALD--GSDVGGREMRV 173 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~~~~~~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v 173 (284)
+.++|||+|||.++++++|+++|++||. |.++.++ .+..+|.++|||||+|.+.++|.+|++.|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4589999999999999999999999998 9999998 787889999999999999999999999996 58999999999
Q ss_pred EEcccCCcc
Q 023297 174 RFSIDMNSR 182 (284)
Q Consensus 174 ~~~~~~~~~ 182 (284)
.++.+....
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999865543
No 155
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.1e-19 Score=126.66 Aligned_cols=86 Identities=26% Similarity=0.429 Sum_probs=78.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 94 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
......++|||+|||.++++++|+++|++||.|..++++.++.+|.++|||||+|.+.++|.+|++ ++..++|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344556899999999999999999999999999999999998899999999999999999999997 577899999999
Q ss_pred EEcccCCc
Q 023297 174 RFSIDMNS 181 (284)
Q Consensus 174 ~~~~~~~~ 181 (284)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99976543
No 156
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=127.83 Aligned_cols=84 Identities=19% Similarity=0.337 Sum_probs=78.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceE-EEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCce----E
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVV-SARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRT----I 273 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~----l 273 (284)
...++|||+|||..+++++|+++|++||.|. .+.+++++.+++++|||||+|.+.++|.+|+ .|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3468999999999999999999999999999 9999999989999999999999999999999 59999999999 9
Q ss_pred EEEeccCCCC
Q 023297 274 IVREGVDRTE 283 (284)
Q Consensus 274 ~v~~a~~k~~ 283 (284)
+|.|+.+...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999987643
No 157
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=130.38 Aligned_cols=83 Identities=28% Similarity=0.565 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.+..+. +|+++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456899999999999999999999999999999999998 8999999999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
+++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87753
No 158
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=1.2e-19 Score=129.13 Aligned_cols=80 Identities=23% Similarity=0.404 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.||+..++|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45899999999999999999999999999999999988899999999999999999999999999999999999999874
No 159
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=6.6e-19 Score=136.89 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=80.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||..+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCCc
Q 023297 176 SIDMNS 181 (284)
Q Consensus 176 ~~~~~~ 181 (284)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 976543
No 160
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=126.76 Aligned_cols=81 Identities=22% Similarity=0.321 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 97 ARPCELYVCNLPRSFDISELL----EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
...++|||+|||.++++++|+ ++|++||.|.+++++.++.+ +|||||+|.+.++|.+|++.|||..++|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345899999999999999999 99999999999999988654 89999999999999999999999999999999
Q ss_pred EEEcccCC
Q 023297 173 VRFSIDMN 180 (284)
Q Consensus 173 v~~~~~~~ 180 (284)
|.++.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997543
No 161
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=127.96 Aligned_cols=83 Identities=19% Similarity=0.406 Sum_probs=78.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcc-CCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCc-cCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD-FRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~-~~g~~l~v~ 276 (284)
.+.++|||+|||+.+++++|+++|++ ||.|..|.|+.+. ++.++|||||+|.+.++|.+|+ .|||.. +.|+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45689999999999999999999999 9999999999998 9999999999999999999999 699999 999999999
Q ss_pred eccCCCC
Q 023297 277 EGVDRTE 283 (284)
Q Consensus 277 ~a~~k~~ 283 (284)
|+.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9987764
No 162
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=128.42 Aligned_cols=80 Identities=15% Similarity=0.274 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CCCCCceeEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG--SDVGGREMRV 173 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~v 173 (284)
....++|||+|||+++++++|+++|++||.|.+++|+++ +|||||+|.+.++|.+|++.|++ ..+.|+.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999999875 79999999999999999998864 6799999999
Q ss_pred EEcccCCc
Q 023297 174 RFSIDMNS 181 (284)
Q Consensus 174 ~~~~~~~~ 181 (284)
.++..+..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99975543
No 163
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.6e-19 Score=122.63 Aligned_cols=75 Identities=25% Similarity=0.506 Sum_probs=72.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEec
Q 023297 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278 (284)
Q Consensus 204 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a 278 (284)
+|||+|||..+++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+|+++||..++|+.|+|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999999988999999999999999999999999999999999999986
No 164
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=5.2e-19 Score=138.77 Aligned_cols=87 Identities=20% Similarity=0.351 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34456889999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.....
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9976544
No 165
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=1.1e-18 Score=130.33 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||..+++++|+++|++||.|.+++++.+. +|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34566899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EcccCC
Q 023297 175 FSIDMN 180 (284)
Q Consensus 175 ~~~~~~ 180 (284)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997543
No 166
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=5.5e-19 Score=130.80 Aligned_cols=81 Identities=26% Similarity=0.450 Sum_probs=76.5
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 199 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
....++|||+|||+.+++++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|+ .|||..++|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 356699999999999999999999999999999999999889999999999999999999999 6999999999999999
Q ss_pred cc
Q 023297 278 GV 279 (284)
Q Consensus 278 a~ 279 (284)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 167
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=128.79 Aligned_cols=84 Identities=29% Similarity=0.539 Sum_probs=79.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||+.+++++|+++|++||.|..|.|+++..++.++|||||+|.+.++|.+|+..||..|.|+.|+|.|+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEcc
Confidence 45689999999999999999999999999999999999889999999999999999999999559999999999999999
Q ss_pred CCCC
Q 023297 280 DRTE 283 (284)
Q Consensus 280 ~k~~ 283 (284)
++.+
T Consensus 94 ~~~~ 97 (105)
T 2dh8_A 94 PRGM 97 (105)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8865
No 168
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=124.12 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||+.+++++|+++|++| .|..|.++++ .+|+++|||||+|.+.++|.+|+.|||..++|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 346899999999999999999999999 9999999999 68999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 023297 280 DRTES 284 (284)
Q Consensus 280 ~k~~~ 284 (284)
++.+|
T Consensus 86 ~~~~s 90 (91)
T 2dgw_A 86 SGPSS 90 (91)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 98775
No 169
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8e-19 Score=123.77 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||+++++++|+++|++| .|.+++++.+ .+|+++|||||+|.+.++|.+|++ |+|..++|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3456899999999999999999999999 9999999999 789999999999999999999998 999999999999999
Q ss_pred cccC
Q 023297 176 SIDM 179 (284)
Q Consensus 176 ~~~~ 179 (284)
+...
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9754
No 170
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=132.95 Aligned_cols=85 Identities=25% Similarity=0.461 Sum_probs=80.4
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 199 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
....++|||+|||..+++++|+++|+.||.|..|.|+++..+++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 355689999999999999999999999999999999999989999999999999999999999 6999999999999999
Q ss_pred ccCCCC
Q 023297 278 GVDRTE 283 (284)
Q Consensus 278 a~~k~~ 283 (284)
+.++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 998764
No 171
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=125.18 Aligned_cols=83 Identities=24% Similarity=0.398 Sum_probs=78.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..+++++|||||+|.+.++|.+|+. ++..+.|+.|.|.|+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~ 91 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPN 91 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecC
Confidence 456889999999999999999999999999999999998899999999999999999999996 4778999999999999
Q ss_pred CCCC
Q 023297 280 DRTE 283 (284)
Q Consensus 280 ~k~~ 283 (284)
++.+
T Consensus 92 ~~~~ 95 (103)
T 2cqg_A 92 SKQS 95 (103)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 8865
No 172
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.2e-18 Score=123.12 Aligned_cols=82 Identities=23% Similarity=0.393 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..+.+.++ +++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999984 7889999999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
+++..
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 98765
No 173
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.2e-19 Score=129.49 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HhhccCCceEEEEEEeCCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCCCCCce
Q 023297 97 ARPCELYVCNLPRSFDISELL---EMFKPFGTVLSVEVSRNPETG---ISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~---~~f~~~G~i~~~~~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 170 (284)
...++|||+|||+++++++|+ ++|++||.|.++.++.+..++ +++|||||+|.+.++|++|++.|||..++|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345899999999999999999 999999999999999887644 56699999999999999999999999999999
Q ss_pred eEEEEcccCC
Q 023297 171 MRVRFSIDMN 180 (284)
Q Consensus 171 l~v~~~~~~~ 180 (284)
|+|.++.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997654
No 174
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-18 Score=124.10 Aligned_cols=82 Identities=32% Similarity=0.663 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+ .|||..|+|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4569999999999999999999999999999999999863 38999999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cq3_A 91 TARVM 95 (103)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 98764
No 175
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=132.34 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||.++++++|+++|++||.|..++|+.++.+|.++|||||+|.+.++|.+|++. ++..++|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999988999999999999999999999976 9999999999999997
Q ss_pred cCCc
Q 023297 178 DMNS 181 (284)
Q Consensus 178 ~~~~ 181 (284)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 6544
No 176
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=2.4e-19 Score=122.87 Aligned_cols=73 Identities=16% Similarity=0.159 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..+.|+.|+|+++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46799999999999999999999999999999965 58999999999999999999999999999999999883
No 177
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=6.8e-20 Score=129.02 Aligned_cols=80 Identities=31% Similarity=0.467 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcccC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 179 (284)
++|||+|||.++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.+ |.+|++.|||..++|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999889999999999999999 99999999999999999999999754
Q ss_pred C
Q 023297 180 N 180 (284)
Q Consensus 180 ~ 180 (284)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 178
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=127.09 Aligned_cols=84 Identities=20% Similarity=0.443 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|..+++..+ +.++|||||+|.+.++|.+|++.||+..++|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3445689999999999999999999999999999999654 5689999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9976543
No 179
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=7.4e-19 Score=128.21 Aligned_cols=84 Identities=32% Similarity=0.577 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||..+++++|+++|++||.|..|.++++..+|.++|||||+|.+.++|.+|+...|..++|+.|+|.++.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAF 102 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEcc
Confidence 45689999999999999999999999999999999999989999999999999999999999655799999999999999
Q ss_pred CCCC
Q 023297 280 DRTE 283 (284)
Q Consensus 280 ~k~~ 283 (284)
++..
T Consensus 103 ~~~~ 106 (109)
T 2rs2_A 103 PRRA 106 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 180
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=125.33 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEE-EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLS-VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
....++|||+|||+++++++|+++|++||.|.+ +.|+.+ .+|+++|||||+|.+.++|.+|++. ++..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345689999999999999999999999999987 888888 7899999999999999999999976 9999999999999
Q ss_pred EcccC
Q 023297 175 FSIDM 179 (284)
Q Consensus 175 ~~~~~ 179 (284)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98643
No 181
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.1e-19 Score=126.53 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|+ .|||..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 44688999999999999999999999999999999999889999999999999999999999 79999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8765
No 182
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=4.5e-19 Score=137.48 Aligned_cols=81 Identities=21% Similarity=0.375 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFG--TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
..++|||+|||+.+++++|+++|++|| .|..|+|+.|+.+|+++|||||+|.+.++|.+|+ .|||..|+|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 9999999999999999999999999999999999 6999999999999999
Q ss_pred ccCC
Q 023297 278 GVDR 281 (284)
Q Consensus 278 a~~k 281 (284)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9764
No 183
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.3e-19 Score=131.39 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34467999999999999999999999999998433322222368899999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9976544
No 184
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=124.46 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC--CCCceeEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD--VGGREMRV 173 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v 173 (284)
..+.++|||+|||.++++++|+++|++||.|.++.+++ .+|||||+|.+.++|.+|++.|++.. +.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34568999999999999999999999999999999985 37999999999999999999999986 78999999
Q ss_pred EEcccC
Q 023297 174 RFSIDM 179 (284)
Q Consensus 174 ~~~~~~ 179 (284)
.++..+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999654
No 185
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=4.7e-19 Score=128.37 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 023297 96 RARPCELYVCNLPRSF------DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR 169 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (284)
....++|||+|||..+ ++++|+++|++||.|.++.++ ..+|+++|||||+|.+.++|.+|++.|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3346899999999999 789999999999999999988 36799999999999999999999999999999998
Q ss_pred -eeEEEEcccC
Q 023297 170 -EMRVRFSIDM 179 (284)
Q Consensus 170 -~l~v~~~~~~ 179 (284)
.|+|.++.+.
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998654
No 186
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=8.4e-19 Score=124.64 Aligned_cols=80 Identities=30% Similarity=0.468 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++.+.. ++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3458999999999999999999999999999999999985 899999999999999999999 59999999999999998
Q ss_pred cC
Q 023297 279 VD 280 (284)
Q Consensus 279 ~~ 280 (284)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 187
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.7e-19 Score=126.11 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC--CCCceeEE
Q 023297 97 ARPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD--VGGREMRV 173 (284)
Q Consensus 97 ~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v 173 (284)
.+.++|||+|||+ ++++++|+++|++||.|.+++|+++ +|||||+|.+.++|.+|++.|++.. +.|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3568999999999 9999999999999999999999865 5899999999999999999998754 89999999
Q ss_pred EEcccCC
Q 023297 174 RFSIDMN 180 (284)
Q Consensus 174 ~~~~~~~ 180 (284)
.++....
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9997543
No 188
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=130.03 Aligned_cols=84 Identities=36% Similarity=0.606 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..++.++|||||+|.+.++|.+|+..||..|.|+.|+|.|+.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 34589999999999999999999999999999999999889999999999999999999999559999999999999999
Q ss_pred CCCC
Q 023297 280 DRTE 283 (284)
Q Consensus 280 ~k~~ 283 (284)
++.+
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8875
No 189
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=122.94 Aligned_cols=81 Identities=15% Similarity=0.265 Sum_probs=71.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCCCCceeE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD--GSDVGGREMR 172 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~ 172 (284)
...+.++|||+|||.++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|++.|+ +..+.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3445689999999999999999999999999999998764 7999999999999999999774 6779999999
Q ss_pred EEEcccCCc
Q 023297 173 VRFSIDMNS 181 (284)
Q Consensus 173 v~~~~~~~~ 181 (284)
|.++.....
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999975543
No 190
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-19 Score=125.89 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||+++++++|+++|++||.+ +++|+.++ +|+++|||||+|.+.++|++|| .+++..++|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 3445899999999999999999999999955 99999997 8999999999999999999999 6899999999999998
Q ss_pred cccC
Q 023297 176 SIDM 179 (284)
Q Consensus 176 ~~~~ 179 (284)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8644
No 191
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.5e-19 Score=127.77 Aligned_cols=82 Identities=29% Similarity=0.584 Sum_probs=78.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
..++|||+|||..+++++|+++|++||.|..+.++++..+|.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 3478999999999999999999999999999999999889999999999999999999999 699999999999999999
Q ss_pred CCC
Q 023297 280 DRT 282 (284)
Q Consensus 280 ~k~ 282 (284)
++.
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 875
No 192
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=124.68 Aligned_cols=82 Identities=26% Similarity=0.465 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.|+++..+ ++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 45689999999999999999999999999999999998543 6899999999999999999 59999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 98754
No 193
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=2.7e-19 Score=135.01 Aligned_cols=82 Identities=23% Similarity=0.330 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEE--EEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCC----ccCCce
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS--ARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT----DFRGRT 272 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~----~~~g~~ 272 (284)
...++|||+|||+.+++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+ .|||. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 56689999999999999999999999999977 99999999999999999999999 999999 79999 999999
Q ss_pred EEEEeccCCC
Q 023297 273 IIVREGVDRT 282 (284)
Q Consensus 273 l~v~~a~~k~ 282 (284)
|+|.|+.++.
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998874
No 194
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=1.2e-18 Score=130.53 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=79.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||+.+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 44689999999999999999999999999999999999889999999999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 100 ~~~~~ 104 (126)
T 3ex7_B 100 FVRGP 104 (126)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 87653
No 195
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.9e-19 Score=125.88 Aligned_cols=82 Identities=11% Similarity=0.159 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||+.+++++|+++|++||.+ .|+|++++ +++++|||||+|.+.++|.+|+++|+..++|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 445899999999999999999999999965 99999998 8999999999999999999999889999999999999988
Q ss_pred CCCC
Q 023297 280 DRTE 283 (284)
Q Consensus 280 ~k~~ 283 (284)
+...
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 196
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.9e-19 Score=131.46 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||+ ||+..++|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4456899999999999999999999999999886677776789999999999999999999997 999999999999999
Q ss_pred cccC
Q 023297 176 SIDM 179 (284)
Q Consensus 176 ~~~~ 179 (284)
+...
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 197
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=127.49 Aligned_cols=81 Identities=27% Similarity=0.427 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|+|+++..+++++|||||+|.+.++|.+|+ .+++ .|.|+.|+|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 45699999999999999999999999999999999999889999999999999999999999 5888 899999999999
Q ss_pred cCC
Q 023297 279 VDR 281 (284)
Q Consensus 279 ~~k 281 (284)
.++
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 764
No 198
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.9e-18 Score=125.62 Aligned_cols=79 Identities=29% Similarity=0.410 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.+.++|||+|||+.+++++|+++|++||.|..|.++.+. +|+++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999998 9999999999999999999999 59999999999999998
Q ss_pred c
Q 023297 279 V 279 (284)
Q Consensus 279 ~ 279 (284)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 199
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.8e-19 Score=128.08 Aligned_cols=83 Identities=33% Similarity=0.502 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|.+++++.+. +.++|||||+|.+.++|++|++.|+|..++|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456899999999999999999999999999999999874 4589999999999999999999999999999999999
Q ss_pred EcccC
Q 023297 175 FSIDM 179 (284)
Q Consensus 175 ~~~~~ 179 (284)
++..+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98653
No 200
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=123.96 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--CCCCceeE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS--DVGGREMR 172 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~g~~l~ 172 (284)
...+.++|||+|||.++++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|++.|++. .+.|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3445689999999999999999999999999999998763 799999999999999999988765 48999999
Q ss_pred EEEcccCCc
Q 023297 173 VRFSIDMNS 181 (284)
Q Consensus 173 v~~~~~~~~ 181 (284)
|.++..+..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999976543
No 201
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=126.79 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCCCCceeEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD--GSDVGGREMRV 173 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v 173 (284)
..+.++|||+|||+++++++|+++|++||.|.+++|+.+ +|||||+|.+.++|.+|++.|+ +..+.|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345689999999999999999999999999999999875 7999999999999999999887 46899999999
Q ss_pred EEcccCCcc
Q 023297 174 RFSIDMNSR 182 (284)
Q Consensus 174 ~~~~~~~~~ 182 (284)
.++..+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999765443
No 202
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6e-19 Score=126.49 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhC--CCccCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN--GTDFRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~--g~~~~g~~l~v~ 276 (284)
...++|||+|||+.+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|+ .|+ +..+.|++|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34689999999999999999999999999999999865 689999999999999999 575 478999999999
Q ss_pred eccCCC
Q 023297 277 EGVDRT 282 (284)
Q Consensus 277 ~a~~k~ 282 (284)
|++++.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 999875
No 203
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-19 Score=122.75 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=67.6
Q ss_pred CeEEEcCCCCCC------CHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc-eeE
Q 023297 100 CELYVCNLPRSF------DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR-EMR 172 (284)
Q Consensus 100 ~~l~v~nl~~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~ 172 (284)
++|||+|||..+ ++++|+++|++||.|.++.++ +.+|+++|||||+|.+.++|.+|++.|||..++|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 789999999999 779999999999999999987 36799999999999999999999999999999999 887
Q ss_pred E
Q 023297 173 V 173 (284)
Q Consensus 173 v 173 (284)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 204
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=124.40 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLR----NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
...++|||+|||+.+++++|+ ++|++||.|.+|.|+.+..+ +|||||+|.+.++|.+|+ .|||..+.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345889999999999999999 99999999999999988754 899999999999999999 6999999999999
Q ss_pred EEeccCCCC
Q 023297 275 VREGVDRTE 283 (284)
Q Consensus 275 v~~a~~k~~ 283 (284)
|.|++++..
T Consensus 84 V~~a~~~~~ 92 (96)
T 2dgx_A 84 VSLATGASG 92 (96)
T ss_dssp EEECCCSSC
T ss_pred EEEcCCCCC
Confidence 999988754
No 205
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-19 Score=124.60 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=75.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|.+|+ .|||..+.|+.|++.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4689999999999999999999999999999999999889999999999999999999999 699999999999998876
Q ss_pred C
Q 023297 280 D 280 (284)
Q Consensus 280 ~ 280 (284)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 206
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=9.7e-19 Score=133.36 Aligned_cols=81 Identities=27% Similarity=0.424 Sum_probs=76.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||..+++++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999987
Q ss_pred c
Q 023297 176 S 176 (284)
Q Consensus 176 ~ 176 (284)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 207
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=126.92 Aligned_cols=84 Identities=15% Similarity=0.266 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHH---HhhccCCceEEEEEeecCCCC---CcceEEEEEeCCHHHHHHHH-HhCCCccCCce
Q 023297 200 ESPHKLYVGNLSWAVKPEDLR---NHFGRFGTVVSARVLHDRKGQ---TTRVFGFISFSSDAERDAAL-SLNGTDFRGRT 272 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~v~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~ 272 (284)
...++|||+|||+.+++++|+ ++|.+||.|..|.|.++..++ +++|||||+|.+.++|.+|+ .|||..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346889999999999999999 999999999999999887644 56699999999999999999 69999999999
Q ss_pred EEEEeccCCCC
Q 023297 273 IIVREGVDRTE 283 (284)
Q Consensus 273 l~v~~a~~k~~ 283 (284)
|+|.|+.++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999998863
No 208
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.1e-18 Score=130.36 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=76.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+ .|+|..++|+.|+|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 489999999999999999999999999999999999889999999999999999999999 8999999999999999874
Q ss_pred C
Q 023297 179 M 179 (284)
Q Consensus 179 ~ 179 (284)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 209
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=123.45 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCc--cCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD--FRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~--~~g~~l~v~ 276 (284)
.+.++|||+|||+.+++++|+++|++||.|.++.+++ .||+|||+|.+.++|.+|+ .|+|.. +.|++|+|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 4568999999999999999999999999999999975 3689999999999999999 699886 789999999
Q ss_pred eccCCC
Q 023297 277 EGVDRT 282 (284)
Q Consensus 277 ~a~~k~ 282 (284)
|++.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 999875
No 210
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=122.22 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-Hh--CCCccCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL--NGTDFRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l--~g~~~~g~~l~v~ 276 (284)
.+.++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+ .| ++..+.|+.|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45689999999999999999999999999999988764 789999999999999999 45 6788999999999
Q ss_pred eccCCC
Q 023297 277 EGVDRT 282 (284)
Q Consensus 277 ~a~~k~ 282 (284)
|++++.
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 999875
No 211
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.7e-18 Score=129.35 Aligned_cols=82 Identities=29% Similarity=0.534 Sum_probs=78.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
..++|||+|||..+++++|+++|++||.|..|.++++..+|.++|||||+|.+.++|.+|++|||..|+|+.|+|.|+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 35889999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CC
Q 023297 281 RT 282 (284)
Q Consensus 281 k~ 282 (284)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 212
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=5.7e-19 Score=125.54 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
..++|||+|||+.+++++|+++|++||.|..+.++.+..+++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4589999999999999999999999999999999999889999999999999999999999 699999999999999986
Q ss_pred C
Q 023297 280 D 280 (284)
Q Consensus 280 ~ 280 (284)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 213
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=126.75 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEe-ecCCCCCcceEEEEEeCCHHHHHHHH-HhC--CCccCCceEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVL-HDRKGQTTRVFGFISFSSDAERDAAL-SLN--GTDFRGRTII 274 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~a~-~l~--g~~~~g~~l~ 274 (284)
...++|||+|||+.+++++|+++|.+||. |..+.++ .+..+|.++|||||+|.+.++|.+|+ .|| +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 34689999999999999999999999998 9999998 78888899999999999999999999 586 5899999999
Q ss_pred EEeccCCCC
Q 023297 275 VREGVDRTE 283 (284)
Q Consensus 275 v~~a~~k~~ 283 (284)
|.|+.++.+
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999998764
No 214
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=124.47 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CCCCCceeE
Q 023297 96 RARPCELYVCNLPRS-FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG--SDVGGREMR 172 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~ 172 (284)
....++|||+|||++ +++++|+++|++||.|.+++|++ ++|||||+|.+.++|.+|++.|++ ..+.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 455789999999998 99999999999999999999974 479999999999999999998864 569999999
Q ss_pred EEEcccCCc
Q 023297 173 VRFSIDMNS 181 (284)
Q Consensus 173 v~~~~~~~~ 181 (284)
|.++..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999975543
No 215
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.4e-18 Score=123.58 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEE-EEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS-ARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||+.+++++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|.+|+..||..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 45689999999999999999999999999988 888888 6899999999999999999999966999999999999998
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
..+.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 216
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.3e-19 Score=129.31 Aligned_cols=83 Identities=16% Similarity=0.176 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCce-EEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTV-LSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
....++|||+|||+++++++|+++|++||.| ..|+|+.++ +|+++|||||+|.+.++|.+|++. ++..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456899999999999999999999999999 899999997 899999999999999999999965 9999999999999
Q ss_pred EcccCC
Q 023297 175 FSIDMN 180 (284)
Q Consensus 175 ~~~~~~ 180 (284)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997544
No 217
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=123.64 Aligned_cols=82 Identities=24% Similarity=0.389 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3456999999999999999999999999987 56666 6799999999999999999999999999999999999999
Q ss_pred cccCCc
Q 023297 176 SIDMNS 181 (284)
Q Consensus 176 ~~~~~~ 181 (284)
+.+...
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 976543
No 218
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-19 Score=129.94 Aligned_cols=81 Identities=22% Similarity=0.464 Sum_probs=77.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
..++|||+|||..+++++|+++|+.||.|..|.|+.+..++.++|||||+|.+.++|.+|+.|||..|.|+.|+|.|+.+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCC
Confidence 45899999999999999999999999999999999999889999999999999999999999999999999999999876
Q ss_pred C
Q 023297 281 R 281 (284)
Q Consensus 281 k 281 (284)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 219
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=8.3e-19 Score=132.51 Aligned_cols=80 Identities=20% Similarity=0.252 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCc---eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGT---VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
...++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++|++ |++..++|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 34589999999999999999999999999 88999999976 9999999999999999999997 9999999999999
Q ss_pred EEccc
Q 023297 174 RFSID 178 (284)
Q Consensus 174 ~~~~~ 178 (284)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 99853
No 220
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.8e-18 Score=124.07 Aligned_cols=82 Identities=27% Similarity=0.508 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCcc--------CC
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF--------RG 270 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~--------~g 270 (284)
...++|||+|||..+++++|+++|++||.|..+.|+++. ++.++|||||+|.+.++|.+|+ .|||..+ .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 8999999999999999999999 6999999 68
Q ss_pred ceEEEEeccCCC
Q 023297 271 RTIIVREGVDRT 282 (284)
Q Consensus 271 ~~l~v~~a~~k~ 282 (284)
+.|.|.|+.++.
T Consensus 102 ~~l~v~~a~p~~ 113 (114)
T 1x5o_A 102 EPLLCKFSGPSS 113 (114)
T ss_dssp SCBEEEECCCSC
T ss_pred CceeEEccCCCC
Confidence 889999999875
No 221
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=1.2e-18 Score=128.89 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCc---eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGT---VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
...++|||+|||+++++++|+++|+.||. |..|+|+.+.. |+++|||||+|.+.++|++|++ +++..++|+.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45689999999999999999999999999 89999999976 9999999999999999999997 9999999999999
Q ss_pred EEcccC
Q 023297 174 RFSIDM 179 (284)
Q Consensus 174 ~~~~~~ 179 (284)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998643
No 222
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=3.9e-18 Score=132.54 Aligned_cols=84 Identities=27% Similarity=0.394 Sum_probs=79.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999989999999999999999999999 59999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87653
No 223
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=119.31 Aligned_cols=77 Identities=23% Similarity=0.451 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||.++++++|+++|++||.|.+++++ +|||||+|.+.++|.+|++.|++..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 455899999999999999999999999999999987 579999999999999999999999999999999999
Q ss_pred ccCCc
Q 023297 177 IDMNS 181 (284)
Q Consensus 177 ~~~~~ 181 (284)
..+..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 76544
No 224
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.9e-18 Score=123.73 Aligned_cols=81 Identities=26% Similarity=0.389 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+. +++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 456899999999999999999999999999999999997 6899999999999999999999 59999999999999999
Q ss_pred cCC
Q 023297 279 VDR 281 (284)
Q Consensus 279 ~~k 281 (284)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 743
No 225
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=3.7e-19 Score=120.74 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=71.4
Q ss_pred eEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 101 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
+|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++ +++..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999998899999999999999999999995 6999999999999875
No 226
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2.7e-19 Score=125.95 Aligned_cols=79 Identities=33% Similarity=0.678 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCC
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k 281 (284)
++|||+|||..+++++|+++|++||.|..+.+.++..+|+++|||||+|.+.+ |.+|+ .|||..++|+.|+|.||.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999989999999999999999 99999 69999999999999999876
Q ss_pred C
Q 023297 282 T 282 (284)
Q Consensus 282 ~ 282 (284)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 227
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=121.73 Aligned_cols=80 Identities=25% Similarity=0.507 Sum_probs=73.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||..+++++|+++|++||.|..+++.++ +|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVR 84 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEE
Confidence 3445689999999999999999999999999999999854 7999999999999999999999999999999999
Q ss_pred EcccCC
Q 023297 175 FSIDMN 180 (284)
Q Consensus 175 ~~~~~~ 180 (284)
++.+..
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 997643
No 228
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=128.00 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 97 ARPCELYVCNLPRSFDISELL----EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 446899999999999999876 6999999999988753 588999999999999999999999999999999999
Q ss_pred EEEcccCCc
Q 023297 173 VRFSIDMNS 181 (284)
Q Consensus 173 v~~~~~~~~ 181 (284)
|.|+.....
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999975543
No 229
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.5e-18 Score=118.89 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=67.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
..-|||+||++.+++++|+++|.+||.|.++++.. ++|||||+|.+.++|.+|+ .|||..+.|++|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46799999999999999999999999999999864 6899999999999999999 799999999999999994
No 230
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.9e-18 Score=121.85 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345568999999999999999999999874 67788888889999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9976544
No 231
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9.3e-19 Score=119.38 Aligned_cols=76 Identities=33% Similarity=0.613 Sum_probs=72.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
++|||+|||..+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.+|+ .++ ..++|+.|+|.||.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~ 77 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF 77 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence 46999999999999999999999999999999999888999999999999999999999 577 99999999999973
No 232
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=128.18 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCce-EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTV-VSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||+.+++++|+++|++||.| ..|.|+++. +|+++|||||+|.+.++|.+|+++||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 456899999999999999999999999999 899999998 899999999999999999999977999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7653
No 233
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-19 Score=129.14 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |+|..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999888 666776779999999999999999999998 999999999999999
Q ss_pred cccCC
Q 023297 176 SIDMN 180 (284)
Q Consensus 176 ~~~~~ 180 (284)
+..+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 97543
No 234
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=9.9e-19 Score=127.12 Aligned_cols=82 Identities=18% Similarity=0.176 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCc---eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGT---VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
....++|||+|||+++++++|+++|+.||. |..++|+.++. |+++|||||+|.+.++|.+|++ +++..++|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345689999999999999999999999998 89999999976 9999999999999999999997 999999999999
Q ss_pred EEEcccC
Q 023297 173 VRFSIDM 179 (284)
Q Consensus 173 v~~~~~~ 179 (284)
|.++...
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998643
No 235
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.5e-18 Score=122.30 Aligned_cols=81 Identities=20% Similarity=0.430 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45689999999999999999999999999999999654 458999999999999999999 79999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
+++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 88754
No 236
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=120.74 Aligned_cols=79 Identities=22% Similarity=0.411 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC--CceeEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG--GREMRV 173 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~--g~~l~v 173 (284)
....++|||+|||.++++++|+++|++||.|.++.+..+ +|||||+|.+.++|++|++.||+..+. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345589999999999999999999999999999998753 789999999999999999999999999 999999
Q ss_pred EEcccCC
Q 023297 174 RFSIDMN 180 (284)
Q Consensus 174 ~~~~~~~ 180 (284)
.++.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9997643
No 237
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=127.89 Aligned_cols=81 Identities=16% Similarity=0.266 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLR----NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|..|+ .|||..+.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456899999999999999876 6999999999988753 6788999999999999999999 7999999999999
Q ss_pred EEeccCCCC
Q 023297 275 VREGVDRTE 283 (284)
Q Consensus 275 v~~a~~k~~ 283 (284)
|.|++.+.+
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999998753
No 238
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=125.31 Aligned_cols=82 Identities=32% Similarity=0.652 Sum_probs=76.0
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 199 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
....++|||+|||..+++++|+++|++||.|..|.+..+. +.++|||||+|.+.++|.+|+ .|||..++|+.|+|.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3466899999999999999999999999999999999885 348999999999999999999 6999999999999999
Q ss_pred ccCCC
Q 023297 278 GVDRT 282 (284)
Q Consensus 278 a~~k~ 282 (284)
+.++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 99874
No 239
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9e-18 Score=120.89 Aligned_cols=82 Identities=24% Similarity=0.446 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|+.|+ .+.++.+..+++++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999874 6788888889999999999999999999999 69999999999999999
Q ss_pred cCCCCC
Q 023297 279 VDRTES 284 (284)
Q Consensus 279 ~~k~~~ 284 (284)
+++.++
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 998753
No 240
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.1e-18 Score=121.56 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCC--ccCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT--DFRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~--~~~g~~l~v~ 276 (284)
.+.++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+ .|++. .+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 45689999999999999999999999999999998753 689999999999999999 57654 5999999999
Q ss_pred eccCCC
Q 023297 277 EGVDRT 282 (284)
Q Consensus 277 ~a~~k~ 282 (284)
|++.+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998875
No 241
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=119.88 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.|. +.++. +.++|||||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999996 66665 35789999999999999999999999999999999999
Q ss_pred cccC
Q 023297 176 SIDM 179 (284)
Q Consensus 176 ~~~~ 179 (284)
+.++
T Consensus 91 a~~~ 94 (97)
T 2e5j_A 91 ARQQ 94 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9754
No 242
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=125.17 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=70.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhC--CCccCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN--GTDFRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~--g~~~~g~~l~v~ 276 (284)
.+.++|||+|||+.+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|+ .++ +..+.|++|+|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 45689999999999999999999999999999999875 689999999999999999 576 578999999999
Q ss_pred eccCCC
Q 023297 277 EGVDRT 282 (284)
Q Consensus 277 ~a~~k~ 282 (284)
|++++.
T Consensus 103 ~a~~k~ 108 (119)
T 2ad9_A 103 FSNHKE 108 (119)
T ss_dssp ECSSSS
T ss_pred EccCCC
Confidence 999875
No 243
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.75 E-value=7.9e-18 Score=143.30 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC-CceeEEEEc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREMRVRFS 176 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~ 176 (284)
..++|||+|||..+++++|+++|++||.|.+++++.+. +|||||+|.+.++|.+|++.|||..+. |+.|+|.|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 46889999999999999999999999999999998653 589999999999999999999999999 999999998
Q ss_pred c
Q 023297 177 I 177 (284)
Q Consensus 177 ~ 177 (284)
.
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 4
No 244
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=1.2e-18 Score=126.90 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
....++|||+|||+++++++|+++|++|| .|..+.+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 899988853 3479999999999999999999999999999999999
Q ss_pred EcccC
Q 023297 175 FSIDM 179 (284)
Q Consensus 175 ~~~~~ 179 (284)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98643
No 245
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.2e-18 Score=142.13 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCC--ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFG--TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
..++|||+|||+++++++|+++|++|| .|.+|+|+.++.+|+++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 347899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 023297 176 SIDM 179 (284)
Q Consensus 176 ~~~~ 179 (284)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8644
No 246
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=6.2e-19 Score=119.63 Aligned_cols=75 Identities=27% Similarity=0.390 Sum_probs=72.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEec
Q 023297 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREG 278 (284)
Q Consensus 204 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a 278 (284)
+|||+|||..+++++|+++|++||.|..+.++++..++.++|||||+|.+.++|.+|++++|..+.|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988999999999999999999999987999999999999986
No 247
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=1.9e-18 Score=127.80 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc---eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT---VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~ 276 (284)
...++|||+|||+.+++++|+++|+.||. |..|+|+.+.. |+++|||||+|.+.++|.+|+++||..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45689999999999999999999999999 89999999986 999999999999999999999999999999999999
Q ss_pred eccCC
Q 023297 277 EGVDR 281 (284)
Q Consensus 277 ~a~~k 281 (284)
++..+
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 248
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=125.08 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
+.++|||+|||+++++++|+++|+.| .|.+|+|+.++. |+++|||||+|.+.++|.+|+ .+++..++|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 34799999999999999999999999 899999999865 999999999999999999999 799999999999998885
Q ss_pred c
Q 023297 178 D 178 (284)
Q Consensus 178 ~ 178 (284)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 249
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.9e-18 Score=122.83 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC-----ce
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG-----RE 170 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-----~~ 170 (284)
....++|||+|||+++++++|+++|++||.|..++|+.+ |||||+|.+.++|++||+.||+..+.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 345689999999999999999999999999999999876 899999999999999999999999999 99
Q ss_pred eEEEEcccCCc
Q 023297 171 MRVRFSIDMNS 181 (284)
Q Consensus 171 l~v~~~~~~~~ 181 (284)
|+|.++.++..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999986543
No 250
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=123.81 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCC------CHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCc-
Q 023297 200 ESPHKLYVGNLSWAV------KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR- 271 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~- 271 (284)
...++|||+|||+.+ ++++|+++|++||.|..|.++ +.+|+++|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346899999999999 789999999999999999988 358899999999999999999999 6999999999
Q ss_pred eEEEEeccCCC
Q 023297 272 TIIVREGVDRT 282 (284)
Q Consensus 272 ~l~v~~a~~k~ 282 (284)
.|+|.|+.+..
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999998654
No 251
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=4.8e-18 Score=126.81 Aligned_cols=82 Identities=27% Similarity=0.376 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.+..+. +|+++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 556899999999999999999999999999999999998 8999999999999999999999 59999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
.++.
T Consensus 112 ~~~~ 115 (124)
T 2kt5_A 112 ASQI 115 (124)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 8764
No 252
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6e-18 Score=117.60 Aligned_cols=76 Identities=21% Similarity=0.385 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCCCCCceeEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL-DGSDVGGREMRVR 174 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~ 174 (284)
....++|||+|||.++++++|+++|++||.|.+++++.+ +|||||+|.+.++|.+|++.| +|..++|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345689999999999999999999999999999999863 799999999999999999988 9999999999999
Q ss_pred Ecc
Q 023297 175 FSI 177 (284)
Q Consensus 175 ~~~ 177 (284)
++.
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 253
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.5e-18 Score=131.03 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=76.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc---eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT---VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~ 276 (284)
...++|||+|||+.+++++|+++|++||. |..|+|+++.. |+++|||||+|.+.++|.+|+++||..++|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 34689999999999999999999999999 89999999986 999999999999999999999999999999999999
Q ss_pred eccCC
Q 023297 277 EGVDR 281 (284)
Q Consensus 277 ~a~~k 281 (284)
++.++
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98654
No 254
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=119.20 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccC--CceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR--GRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~--g~~l~v~ 276 (284)
.+.++|||+|||..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+ .|||..+. |+.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45689999999999999999999999999999998754 679999999999999999 69999999 9999999
Q ss_pred eccCCCCC
Q 023297 277 EGVDRTES 284 (284)
Q Consensus 277 ~a~~k~~~ 284 (284)
|++++..+
T Consensus 89 ~a~~~~~~ 96 (97)
T 1why_A 89 FAKSGPSS 96 (97)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99998754
No 255
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-19 Score=127.55 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||+.+++++|+++|++||.|.. .++.+..+++++|||||+|.+.++|.+|++|||..+.|+.|+|.|+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35689999999999999999999999999888 66777678899999999999999999999999999999999999999
Q ss_pred CCCC
Q 023297 280 DRTE 283 (284)
Q Consensus 280 ~k~~ 283 (284)
++.+
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8865
No 256
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=124.44 Aligned_cols=80 Identities=18% Similarity=0.499 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||..+++++|+++|++||.|.+++++.+ +|||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999999875 78999999999999999999999999999999999
Q ss_pred cccCCc
Q 023297 176 SIDMNS 181 (284)
Q Consensus 176 ~~~~~~ 181 (284)
+.+...
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 976544
No 257
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=117.37 Aligned_cols=76 Identities=21% Similarity=0.530 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456899999999999999999999999999999997 579999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 258
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=127.86 Aligned_cols=80 Identities=29% Similarity=0.452 Sum_probs=75.6
Q ss_pred cCCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 199 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
....++|||+|||..+++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|.+|+ .|||..++|+.|+|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 346799999999999999999999999999999999999889999999999999999999999 6999999999999998
Q ss_pred c
Q 023297 278 G 278 (284)
Q Consensus 278 a 278 (284)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 259
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=3.2e-18 Score=138.90 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=97.5
Q ss_pred CcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCC-----cc------------------------------CCCCC
Q 023297 52 PAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSS-----VE------------------------------EPRSR 96 (284)
Q Consensus 52 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------------------------------~~~~~ 96 (284)
.+||+||.+.+.+++..|.+.+||....+......... .. .....
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 120 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ 120 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccC
Confidence 47999999999999999999999887655432211000 00 00012
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCce--EEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc----e
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTV--LSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR----E 170 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i--~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~----~ 170 (284)
.+.++|||+|||.++++++|+++|++||.| .+++++.+. +..+|||||+|.+.++|.+|+..|||..+.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 345789999999999999999999999998 899988764 56679999999999999999999999999876 5
Q ss_pred eEEEEc
Q 023297 171 MRVRFS 176 (284)
Q Consensus 171 l~v~~~ 176 (284)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 260
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.2e-18 Score=121.97 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCC--ccCCceEEE
Q 023297 200 ESPHKLYVGNLSW-AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT--DFRGRTIIV 275 (284)
Q Consensus 200 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~--~~~g~~l~v 275 (284)
.+.++|||+|||+ .+++++|+++|++||.|.+|.|+++ +|||||+|.+.++|..|+ .||+. .+.|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 4568999999999 9999999999999999999999865 468999999999999999 68764 599999999
Q ss_pred EeccCCC
Q 023297 276 REGVDRT 282 (284)
Q Consensus 276 ~~a~~k~ 282 (284)
.|++.+.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9999654
No 261
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3e-18 Score=124.51 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=73.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccCC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~k 281 (284)
..+|||+|||+.+++++|+++|++| .|..|.|+.+.. |+++|||||+|.+.++|.+|+.+||..++|+.|.|..+.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 4789999999999999999999999 899999999975 99999999999999999999999999999999999988653
No 262
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=129.08 Aligned_cols=82 Identities=18% Similarity=0.267 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||+.+++++|+++|..||.|..+.++.+..+|+++|||||+|.+.++|.+|+.|||..|+|+.|.|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45689999999999999999999999999998777777779999999999999999999999999999999999999987
Q ss_pred CC
Q 023297 280 DR 281 (284)
Q Consensus 280 ~k 281 (284)
++
T Consensus 103 ~~ 104 (124)
T 1wel_A 103 KK 104 (124)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 263
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=6.6e-18 Score=122.88 Aligned_cols=78 Identities=26% Similarity=0.416 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||.++++++|+++|++||.|..+.++ +|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34456899999999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred EcccCC
Q 023297 175 FSIDMN 180 (284)
Q Consensus 175 ~~~~~~ 180 (284)
++....
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 997543
No 264
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-19 Score=133.91 Aligned_cols=86 Identities=23% Similarity=0.385 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEE--------EEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLS--------VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~--------~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (284)
.+.++|||+|||.++++++|+++|++||.|.. ++++.++.+|.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34589999999999999999999999999998 9999998889999999999999999999999999999999
Q ss_pred ceeEEEEcccCCcc
Q 023297 169 REMRVRFSIDMNSR 182 (284)
Q Consensus 169 ~~l~v~~~~~~~~~ 182 (284)
+.|+|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999765543
No 265
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=119.85 Aligned_cols=80 Identities=25% Similarity=0.395 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 456999999999999999999999999976 56666 58899999999999999999999 59999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 88753
No 266
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=2.9e-18 Score=122.33 Aligned_cols=81 Identities=26% Similarity=0.448 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 97 ARPCELYVCNLPRSFDISELL----EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
.+.++|||+|||.++++++|+ ++|++||.|.++.+.. +|.++|||||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999 9999999999999874 477899999999999999999999999999999999
Q ss_pred EEEcccCC
Q 023297 173 VRFSIDMN 180 (284)
Q Consensus 173 v~~~~~~~ 180 (284)
|.++.+..
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99997643
No 267
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.8e-18 Score=122.15 Aligned_cols=75 Identities=24% Similarity=0.503 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||.++++++|+++|++||.|.++++.. ++|||||+|.+.++|.+|++.|+|..++|+.|+|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 358999999999999999999999999999999973 58999999999999999999999999999999999986
Q ss_pred c
Q 023297 178 D 178 (284)
Q Consensus 178 ~ 178 (284)
+
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 268
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.7e-18 Score=125.48 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=72.4
Q ss_pred CeEEEcCC----CCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCCC
Q 023297 100 CELYVCNL----PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS----INS----AKNAII--ALDGSD 165 (284)
Q Consensus 100 ~~l~v~nl----~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 165 (284)
.+|||+|| |+.+++.+|+++|+.||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 899988 789999
Q ss_pred CCCceeEEEEccc
Q 023297 166 VGGREMRVRFSID 178 (284)
Q Consensus 166 ~~g~~l~v~~~~~ 178 (284)
++|+.|+|.+...
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998753
No 269
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=121.15 Aligned_cols=78 Identities=28% Similarity=0.365 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCC-----ceE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG-----RTI 273 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g-----~~l 273 (284)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+ |||||+|.+.++|.+|+ .|||..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45689999999999999999999999999999999876 79999999999999999 599999999 999
Q ss_pred EEEeccCCCCC
Q 023297 274 IVREGVDRTES 284 (284)
Q Consensus 274 ~v~~a~~k~~~ 284 (284)
+|.++.++..+
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999987653
No 270
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.9e-18 Score=126.26 Aligned_cols=84 Identities=26% Similarity=0.361 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.+.++|||+|||..+++++|+++|++||.|..+.+..+..+++++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45689999999999999999999999999854433333237889999999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 98764
No 271
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.4e-18 Score=117.79 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=66.6
Q ss_pred cEEEEcCCCCCC------CHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCc-eEE
Q 023297 203 HKLYVGNLSWAV------KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGR-TII 274 (284)
Q Consensus 203 ~~l~v~nl~~~~------~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~-~l~ 274 (284)
++|||+|||..+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|.+|+ .|||..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999988 358899999999999999999999 6999999999 887
Q ss_pred EE
Q 023297 275 VR 276 (284)
Q Consensus 275 v~ 276 (284)
|+
T Consensus 80 V~ 81 (81)
T 2krb_A 80 VN 81 (81)
T ss_dssp CC
T ss_pred eC
Confidence 63
No 272
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-18 Score=125.34 Aligned_cols=81 Identities=20% Similarity=0.226 Sum_probs=76.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc---eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT---VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~ 276 (284)
...++|||+|||+.+++++|+++|+.||. |..|.|+.+.. |+++|||||+|.+.++|.+|+.+||..++|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 45689999999999999999999999988 89999999986 999999999999999999999999999999999999
Q ss_pred eccCC
Q 023297 277 EGVDR 281 (284)
Q Consensus 277 ~a~~k 281 (284)
++.++
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98754
No 273
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=1.9e-18 Score=124.50 Aligned_cols=80 Identities=19% Similarity=0.418 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||.++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++ ++..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999997 89999999999999999999996 9999999999999997
Q ss_pred cCC
Q 023297 178 DMN 180 (284)
Q Consensus 178 ~~~ 180 (284)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 274
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-18 Score=121.95 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=72.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||..+++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999988766 2468899999999999999999999999999999999999
Q ss_pred EcccCC
Q 023297 175 FSIDMN 180 (284)
Q Consensus 175 ~~~~~~ 180 (284)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997543
No 275
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.3e-17 Score=118.78 Aligned_cols=78 Identities=18% Similarity=0.409 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 96 RARPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 96 ~~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
..+.++|||+|||. .+++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34568999999998 99999999999999999999984 6899999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.....
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9975443
No 276
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=1.9e-17 Score=118.06 Aligned_cols=76 Identities=18% Similarity=0.430 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 95 SRARPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
.....++|||+|||. ++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++.|+|..++|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345679999999998 99999999999999999999983 789999999999999999999999999999999
Q ss_pred EEccc
Q 023297 174 RFSID 178 (284)
Q Consensus 174 ~~~~~ 178 (284)
.++..
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 99864
No 277
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=118.76 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45689999999999999999999999999999999754 689999999999999999 79999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 98753
No 278
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.73 E-value=4.6e-17 Score=134.49 Aligned_cols=121 Identities=23% Similarity=0.285 Sum_probs=99.3
Q ss_pred cceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCcc-----C----------------------------CCCCCCC
Q 023297 53 AGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE-----E----------------------------PRSRARP 99 (284)
Q Consensus 53 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----------------------------~~~~~~~ 99 (284)
+||+||.+.+.+++..+.+.+++....+........... . .......
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCC
Confidence 799999999999999999999987765554322111000 0 0112346
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC-CceeEEEEcc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREMRVRFSI 177 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 177 (284)
++|||+|||..+++++|+++|++|| .|..++++.+ .+|||||+|.+.++|.+|++.|+|..++ |+.|+|.|+.
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 8999999999999999999999999 9999999664 3789999999999999999999999999 9999999986
Q ss_pred c
Q 023297 178 D 178 (284)
Q Consensus 178 ~ 178 (284)
+
T Consensus 227 ~ 227 (229)
T 2adc_A 227 S 227 (229)
T ss_dssp S
T ss_pred C
Confidence 4
No 279
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=118.08 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||+.+++++|+++|++||.|. +.++.+ +++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4468999999999999999999999999986 666654 57899999999999999999 79999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98864
No 280
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=6.9e-18 Score=139.10 Aligned_cols=81 Identities=21% Similarity=0.449 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFG--TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
..++|||+||++.+++++|+++|++|| .|..|+|++++.+++++|||||+|.+.++|.+|| .|||..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 457899999999999999999999999 9999999999999999999999999999999999 5999999999999999
Q ss_pred ccCC
Q 023297 278 GVDR 281 (284)
Q Consensus 278 a~~k 281 (284)
+.++
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8753
No 281
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=2.4e-17 Score=118.92 Aligned_cols=79 Identities=20% Similarity=0.376 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||.++++++|+++|++||.|..++++ +|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 345899999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred ccCCccc
Q 023297 177 IDMNSRT 183 (284)
Q Consensus 177 ~~~~~~~ 183 (284)
.+.....
T Consensus 81 ~~~~~~~ 87 (103)
T 2dgu_A 81 KPPDQKR 87 (103)
T ss_dssp CCCCCCC
T ss_pred CCCcccc
Confidence 8665443
No 282
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=116.72 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.|.++.+++ +||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 44568999999999999999999999999999999874 4999999999999999999999999999999999
Q ss_pred cccCCc
Q 023297 176 SIDMNS 181 (284)
Q Consensus 176 ~~~~~~ 181 (284)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 976543
No 283
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=5.1e-18 Score=121.02 Aligned_cols=81 Identities=23% Similarity=0.448 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLR----NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
.+.++|||+|||..+++++|+ ++|++||.|..|.+.. +|.++|||||+|.+.++|.+|+ .|||..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456899999999999999999 9999999999998873 5678899999999999999999 6999999999999
Q ss_pred EEeccCCCC
Q 023297 275 VREGVDRTE 283 (284)
Q Consensus 275 v~~a~~k~~ 283 (284)
|.|+.++.+
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999998764
No 284
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=2.8e-17 Score=120.02 Aligned_cols=78 Identities=15% Similarity=0.397 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 95 SRARPCELYVCNLPRS-FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
.....++|||+|||.+ +++++|+++|++||.|.++.+ ++|||||+|.+.++|.+|++.|+|..++|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999998 4789999999999999999999999999999999
Q ss_pred EEcccCC
Q 023297 174 RFSIDMN 180 (284)
Q Consensus 174 ~~~~~~~ 180 (284)
.++....
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9997543
No 285
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=2.7e-18 Score=130.10 Aligned_cols=82 Identities=15% Similarity=0.259 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||+++++++|+++|++|| |.+|+|+.++. |+++|||||+|.+.++|++|| .+++..++|+.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 66999999975 999999999999999999999 8999999999999999
Q ss_pred cccCC
Q 023297 176 SIDMN 180 (284)
Q Consensus 176 ~~~~~ 180 (284)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 86543
No 286
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=6.5e-18 Score=151.82 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEc
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 176 (284)
...++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 023297 177 IDMN 180 (284)
Q Consensus 177 ~~~~ 180 (284)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 287
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.2e-18 Score=122.50 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCC-CCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhC--CCccCCceEEE
Q 023297 200 ESPHKLYVGNLSWA-VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN--GTDFRGRTIIV 275 (284)
Q Consensus 200 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~--g~~~~g~~l~v 275 (284)
.+.++|||+|||++ +++++|+++|++||.|.+|.|++ ++|||||+|.+.++|..|+ .|| +..+.|++|+|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 45789999999998 99999999999999999999974 4789999999999999999 575 56799999999
Q ss_pred EeccCCCC
Q 023297 276 REGVDRTE 283 (284)
Q Consensus 276 ~~a~~k~~ 283 (284)
.|++.+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99987754
No 288
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.5e-17 Score=131.62 Aligned_cols=84 Identities=23% Similarity=0.332 Sum_probs=78.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|||+.+++++|+++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+|++.|+|..++|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred EcccC
Q 023297 175 FSIDM 179 (284)
Q Consensus 175 ~~~~~ 179 (284)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99643
No 289
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=1.3e-17 Score=124.09 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceE--EEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVL--SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~--~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
...++|||+|||+++++++|+++|++| .|. +|+|+.++. |+++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEE
Confidence 345899999999999999999999999 566 899999976 9999999999999999999995 58899999999998
Q ss_pred Eccc
Q 023297 175 FSID 178 (284)
Q Consensus 175 ~~~~ 178 (284)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8753
No 290
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=120.66 Aligned_cols=78 Identities=23% Similarity=0.506 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35689999999999999999999999999999999876 689999999999999999 79999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
+++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98754
No 291
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=116.74 Aligned_cols=77 Identities=23% Similarity=0.296 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccC--CceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPF--GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
....++|||+|||.++++++|+++|++| |.|..+++. +|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 899988764 579999999999999999999999999999999
Q ss_pred EEcccCC
Q 023297 174 RFSIDMN 180 (284)
Q Consensus 174 ~~~~~~~ 180 (284)
.++.+..
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9997654
No 292
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=120.85 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||+++++++|+++|++||.|..|.++. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47999999999999999999999999999998864 578999999999999999999999999999999999975
Q ss_pred C
Q 023297 179 M 179 (284)
Q Consensus 179 ~ 179 (284)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 293
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=9.4e-18 Score=120.59 Aligned_cols=75 Identities=21% Similarity=0.410 Sum_probs=70.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
..++|||+|||..+++++|+++|++||.|..+++. +++|||||+|.+.++|.+|+ .|||..++|+.|+|.|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 35899999999999999999999999999999997 35789999999999999999 799999999999999998
Q ss_pred CC
Q 023297 280 DR 281 (284)
Q Consensus 280 ~k 281 (284)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 294
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=132.56 Aligned_cols=121 Identities=23% Similarity=0.273 Sum_probs=99.7
Q ss_pred cceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCcc---------------------------------CCCCCCCC
Q 023297 53 AGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE---------------------------------EPRSRARP 99 (284)
Q Consensus 53 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~ 99 (284)
+||+||.+.+.+++..+.+.+++....+........... ......+.
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 120 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCc
Confidence 789999999999999999999988766554332110000 00112347
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC-CceeEEEEcc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREMRVRFSI 177 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 177 (284)
++|||+|||..+++++|+++|++|| .|.+++++.+ .+|+|||+|.+.++|.+|++.|+|..++ |+.|+|.|+.
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 8999999999999999999999999 9999999764 2789999999999999999999999999 9999999986
Q ss_pred c
Q 023297 178 D 178 (284)
Q Consensus 178 ~ 178 (284)
+
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 295
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=6e-18 Score=125.54 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCce----EEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTV----LSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i----~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
..++|||+|||+++|+++|+++|++||.| ..|+|+.+ .+|+++|||||+|.+.++|++|++. ++..++|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 45899999999999999999999999975 68999998 5899999999999999999999964 999999999999
Q ss_pred EEcccC
Q 023297 174 RFSIDM 179 (284)
Q Consensus 174 ~~~~~~ 179 (284)
..+...
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 888543
No 296
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4e-19 Score=131.15 Aligned_cols=84 Identities=21% Similarity=0.364 Sum_probs=78.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEE--------EEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS--------ARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
...++|||+|||..+++++|+++|++||.|.. |.++.+..+++++|||||+|.+.++|.+|+ .|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34588999999999999999999999999999 999999888999999999999999999999 599999999
Q ss_pred ceEEEEeccCCCC
Q 023297 271 RTIIVREGVDRTE 283 (284)
Q Consensus 271 ~~l~v~~a~~k~~ 283 (284)
+.|+|.|+.++.+
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999998764
No 297
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=115.81 Aligned_cols=77 Identities=25% Similarity=0.440 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|||.++++++|+++|++||.|.++++++ +||||+|.+.++|.+|++.|+|..++|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999874 4999999999999999999999999999999999
Q ss_pred cccCC
Q 023297 176 SIDMN 180 (284)
Q Consensus 176 ~~~~~ 180 (284)
+.+..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97653
No 298
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=4.2e-17 Score=116.27 Aligned_cols=75 Identities=24% Similarity=0.452 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 200 ESPHKLYVGNLSW-AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 200 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
...++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+ .|||..++|+.|+|.|
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 4568999999998 99999999999999999999983 789999999999999999 6999999999999999
Q ss_pred ccCCC
Q 023297 278 GVDRT 282 (284)
Q Consensus 278 a~~k~ 282 (284)
++++.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 299
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=8.6e-18 Score=121.03 Aligned_cols=80 Identities=21% Similarity=0.600 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
..++|||+|||+.+++++|+++|++||.|..|.++.+. +|+++|||||+|.+.++|.+|+. +|..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 35889999999999999999999999999999999998 99999999999999999999999 99999999999999986
Q ss_pred CC
Q 023297 281 RT 282 (284)
Q Consensus 281 k~ 282 (284)
+.
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 300
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.72 E-value=2.5e-17 Score=138.72 Aligned_cols=122 Identities=18% Similarity=0.156 Sum_probs=104.1
Q ss_pred cCCcceEEEEeecchhhhHHHHhhcCCCCCCCCCcCCCCCccCCCCCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEE
Q 023297 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (284)
Q Consensus 50 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~ 129 (284)
.+.+||+||.+.+.+++..+...+++....+....... ....++|||+|||..+++++|+++|+.||.|.++
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~--------a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v 126 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF--------ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKA 126 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE--------CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee--------cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 34689999999999999999999999877665443321 1235799999999999999999999999999999
Q ss_pred EEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CCCC---CceeEEEEcccCC
Q 023297 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVG---GREMRVRFSIDMN 180 (284)
Q Consensus 130 ~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~---g~~l~v~~~~~~~ 180 (284)
.++.+ .+|.++|||||+|.+.++|.+|++.|++ ..+. |++|.|.++....
T Consensus 127 ~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 127 VVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 99999 5899999999999999999999999955 4444 9999999997543
No 301
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=2.5e-17 Score=119.80 Aligned_cols=76 Identities=22% Similarity=0.434 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|+ .|||..++|+.|+|.|+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 456899999999999999999999999999999997 689999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
+++..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 98753
No 302
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=113.56 Aligned_cols=74 Identities=31% Similarity=0.498 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-Hh-CCCccCCceEEEEe
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL-NGTDFRGRTIIVRE 277 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l-~g~~~~g~~l~v~~ 277 (284)
...++|||+|||..+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+ .| ||..+.|+.|+|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45689999999999999999999999999999999863 689999999999999999 58 99999999999999
Q ss_pred cc
Q 023297 278 GV 279 (284)
Q Consensus 278 a~ 279 (284)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 303
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=7.3e-18 Score=125.39 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceE--EEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEe
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVV--SARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVRE 277 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~ 277 (284)
...++|||+|||+.+++++|+++|++| .|. .|+|+.++. |+++|||||+|.+.++|.+|+.+++..|+|+.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEE
Confidence 345889999999999999999999999 566 899999986 9999999999999999999998788999999999998
Q ss_pred ccCC
Q 023297 278 GVDR 281 (284)
Q Consensus 278 a~~k 281 (284)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 304
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=9.6e-18 Score=120.53 Aligned_cols=75 Identities=23% Similarity=0.435 Sum_probs=71.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCC
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDR 281 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k 281 (284)
++|||+|||..+++++|+++|++||.|..|.+..+ ++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 6889999999999999999 69999999999999999886
Q ss_pred C
Q 023297 282 T 282 (284)
Q Consensus 282 ~ 282 (284)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 305
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=118.82 Aligned_cols=79 Identities=18% Similarity=0.361 Sum_probs=71.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 456899999999999999999999999987666 337889999999999999999999 59999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 88764
No 306
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=115.76 Aligned_cols=77 Identities=26% Similarity=0.481 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||.++++++|+++|++||.|.+| +.+..+|+ ||||+|.+.++|.+|++ |+|..++|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45799999999999999999999999999987 56655555 99999999999999998 99999999999999886
Q ss_pred cCC
Q 023297 178 DMN 180 (284)
Q Consensus 178 ~~~ 180 (284)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 307
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=116.60 Aligned_cols=79 Identities=24% Similarity=0.335 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEE-EEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSV-EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
...++|||+|||+++++++|+++|++||.|.++ .++.++.+| .|||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346899999999999999999999999999999 477775543 399999999999999999999999999999999
Q ss_pred cccC
Q 023297 176 SIDM 179 (284)
Q Consensus 176 ~~~~ 179 (284)
+.++
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9765
No 308
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=4.9e-18 Score=128.69 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEecc
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~ 279 (284)
...++|||+|||+++++++|+++|++|| |..|.|+++.. ++++|||||+|.+.++|.+|+++|+..++|+.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECC
Confidence 3457899999999999999999999999 66999999985 999999999999999999999999999999999999988
Q ss_pred CCC
Q 023297 280 DRT 282 (284)
Q Consensus 280 ~k~ 282 (284)
++.
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 309
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-17 Score=117.54 Aligned_cols=78 Identities=22% Similarity=0.324 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CCCCCceeEEE
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGT-VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~~l~v~ 174 (284)
...++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34589999999999999999999999999 6666653 479999999999999999999999 99999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9976543
No 310
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9e-17 Score=114.98 Aligned_cols=76 Identities=28% Similarity=0.427 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccC--CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRF--GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~ 276 (284)
...++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+ .|||..+.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456899999999999999999999999 899999874 569999999999999999 599999999999999
Q ss_pred eccCCCC
Q 023297 277 EGVDRTE 283 (284)
Q Consensus 277 ~a~~k~~ 283 (284)
|++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9998754
No 311
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.71 E-value=1.1e-17 Score=121.73 Aligned_cols=77 Identities=22% Similarity=0.221 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC-ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
..++|||+|||+++++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|.+|+ .|||..++|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 358899999999999999999999999 8999988532 47899999999999999999 69999999999999999
Q ss_pred cCC
Q 023297 279 VDR 281 (284)
Q Consensus 279 ~~k 281 (284)
..+
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 765
No 312
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=3.9e-17 Score=120.17 Aligned_cols=79 Identities=23% Similarity=0.415 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.++.+ +.++|||||+|.+.++|.+|+ .|||..+.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 34689999999999999999999999999999999865 446999999999999999999 59999999999999999
Q ss_pred cCC
Q 023297 279 VDR 281 (284)
Q Consensus 279 ~~k 281 (284)
.++
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 864
No 313
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.9e-18 Score=125.56 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCce----EEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTV----VSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v----~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v 275 (284)
...++|||+|||+.+++++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++|.+|+..|+..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 345889999999999999999999999875 689999985 899999999999999999999977999999999999
Q ss_pred EeccCC
Q 023297 276 REGVDR 281 (284)
Q Consensus 276 ~~a~~k 281 (284)
..+.++
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 987643
No 314
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.1e-17 Score=114.53 Aligned_cols=79 Identities=23% Similarity=0.466 Sum_probs=71.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
.....++|||+|| ++++++|+++|++||.|.++.+. .++|||||+|.+.++|.+|++.|+|..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3445689999996 89999999999999999999984 468999999999999999999999999999999999
Q ss_pred EcccCCc
Q 023297 175 FSIDMNS 181 (284)
Q Consensus 175 ~~~~~~~ 181 (284)
++.++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9976543
No 315
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=112.30 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=64.8
Q ss_pred CcE-EEEcCCCCCCCHHH----HHHhhccC-CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 202 PHK-LYVGNLSWAVKPED----LRNHFGRF-GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 202 ~~~-l~v~nl~~~~~~~~----l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
..+ |||+|||+.+++++ |+++|++| |.|.+| ++ |+|||+|.+.++|.+|+ +|||..+.||.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 455 99999999999988 55899999 599998 23 89999999999999999 7999999999999
Q ss_pred EEeccCCCC
Q 023297 275 VREGVDRTE 283 (284)
Q Consensus 275 v~~a~~k~~ 283 (284)
|.||+.+.+
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999998875
No 316
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=5.1e-17 Score=117.17 Aligned_cols=76 Identities=26% Similarity=0.433 Sum_probs=70.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
.+.++|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456889999999999999999999999999999987 348999999999999999 59999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++.+
T Consensus 81 ~~~~~ 85 (103)
T 2dgu_A 81 KPPDQ 85 (103)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 88764
No 317
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.4e-17 Score=115.97 Aligned_cols=76 Identities=24% Similarity=0.449 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEe
Q 023297 200 ESPHKLYVGNLSW-AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVRE 277 (284)
Q Consensus 200 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~ 277 (284)
.+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|..|+ .|||..+.|+.|+|.|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4568999999998 99999999999999999999984 679999999999999999 6999999999999999
Q ss_pred ccCCCC
Q 023297 278 GVDRTE 283 (284)
Q Consensus 278 a~~k~~ 283 (284)
+.++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987643
No 318
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=119.70 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=68.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~ 280 (284)
.++|||+|||+.+++++|+++|++||.|..|.+++ ++|||||+|.+.++|..|+ .|||..+.|+.|.|.|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47899999999999999999999999999998864 5679999999999999999 6999999999999999976
Q ss_pred C
Q 023297 281 R 281 (284)
Q Consensus 281 k 281 (284)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 319
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=113.71 Aligned_cols=76 Identities=26% Similarity=0.562 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..|.+.++ ||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45689999999999999999999999999999999733 8999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
+++..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 98754
No 320
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=5.8e-17 Score=113.58 Aligned_cols=77 Identities=23% Similarity=0.497 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCc--cCCceEEEEe
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTD--FRGRTIIVRE 277 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~--~~g~~l~v~~ 277 (284)
.+.++|||+|||+++++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ ++|.. +.|+.|.|.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEE
Confidence 45689999999999999999999999999999999874 78999999999999983 45554 4699999999
Q ss_pred ccCCCCC
Q 023297 278 GVDRTES 284 (284)
Q Consensus 278 a~~k~~~ 284 (284)
+.++.++
T Consensus 81 a~~k~~~ 87 (89)
T 3d2w_A 81 AEPKHNK 87 (89)
T ss_dssp CC-----
T ss_pred cCCCCcC
Confidence 9988753
No 321
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=4.4e-17 Score=114.03 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..++|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34889999999999999999999999 99999884 478999999999999999999999999999999999985
Q ss_pred c
Q 023297 178 D 178 (284)
Q Consensus 178 ~ 178 (284)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 322
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=6.7e-18 Score=129.26 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEE--------EEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSV--------EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~--------~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (284)
...++|||+|||+++++++|+++|++||.|..+ .+. .+|.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 445899999999999999999999999998763 333 358899999999999999999999999999999
Q ss_pred ceeEEEEcccCCc
Q 023297 169 REMRVRFSIDMNS 181 (284)
Q Consensus 169 ~~l~v~~~~~~~~ 181 (284)
+.|.|.++.....
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999975543
No 323
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-17 Score=119.11 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=69.2
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC-----CCc
Q 023297 97 ARPCELYV--CNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV-----GGR 169 (284)
Q Consensus 97 ~~~~~l~v--~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-----~g~ 169 (284)
.+.++||| +||+.++++++|+++|++||.|.++.++. .+|||||+|.+.++|++|++.|||..+ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34588999 77999999999999999999999988754 279999999999999999999999987 689
Q ss_pred eeEEEEcccCC
Q 023297 170 EMRVRFSIDMN 180 (284)
Q Consensus 170 ~l~v~~~~~~~ 180 (284)
.|.|.++....
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999986443
No 324
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.6e-17 Score=112.75 Aligned_cols=76 Identities=32% Similarity=0.599 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||..+++++|+++|++||.|..+.+.++ ||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 34688999999999999999999999999999999743 8999999999999999 69999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87753
No 325
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.69 E-value=1e-16 Score=123.57 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=70.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCC--ceEEEEec
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRG--RTIIVREG 278 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g--~~l~v~~a 278 (284)
..+|||+||++.+++++|+++|++||.|.+|.|+.+. ++|||||+|.+.++|..|+ .|||..|.| +.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 3668999999999999999999999999999997543 5789999999999999999 699999965 99999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 9874
No 326
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.69 E-value=1.7e-16 Score=117.99 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=68.5
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHH-HhCCCccCC--ceEEEEec
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF-GFISFSSDAERDAAL-SLNGTDFRG--RTIIVREG 278 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~a~-~l~g~~~~g--~~l~v~~a 278 (284)
-.|||+||++.+++++|+++|++||.|.+|.++.+ .+|+ |||+|.+.++|..|+ .|||..|.| ++|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 45789999999999999999999999999988764 2577 999999999999999 799999988 99999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
+++.
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8764
No 327
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.3e-16 Score=110.39 Aligned_cols=72 Identities=32% Similarity=0.374 Sum_probs=64.3
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHhhccC-CceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 99 PCE-LYVCNLPRSFDISE----LLEMFKPF-GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 99 ~~~-l~v~nl~~~~t~~~----l~~~f~~~-G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
..+ |||+|||..+++++ |+++|++| |.|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 344 99999999999988 55899999 499987 33 9999999999999999999999999999999
Q ss_pred EEEcccCC
Q 023297 173 VRFSIDMN 180 (284)
Q Consensus 173 v~~~~~~~ 180 (284)
|.++....
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99997554
No 328
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4e-17 Score=119.32 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=70.2
Q ss_pred cEEEEcCC----CCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCC----HHH----HHHHH---HhCCCc
Q 023297 203 HKLYVGNL----SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS----DAE----RDAAL---SLNGTD 267 (284)
Q Consensus 203 ~~l~v~nl----~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~----~~~----A~~a~---~l~g~~ 267 (284)
..|||+|| |+.+++++|+++|+.||.|.++.++.|+.+|.++|||||+|.+ +++ |.+|+ ++||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 333 77776 379999
Q ss_pred cCCceEEEEeccC
Q 023297 268 FRGRTIIVREGVD 280 (284)
Q Consensus 268 ~~g~~l~v~~a~~ 280 (284)
|+|+.|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 329
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=116.03 Aligned_cols=77 Identities=29% Similarity=0.480 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCc-eEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCC-CccCCceEEEE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG-TDFRGRTIIVR 276 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g-~~~~g~~l~v~ 276 (284)
...++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+ .||| ..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 34588999999999999999999999999 6666652 4789999999999999999 6999 99999999999
Q ss_pred eccCCCC
Q 023297 277 EGVDRTE 283 (284)
Q Consensus 277 ~a~~k~~ 283 (284)
|+.++.+
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9998764
No 330
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=1e-16 Score=116.96 Aligned_cols=74 Identities=26% Similarity=0.507 Sum_probs=69.0
Q ss_pred CCcEEEEcCCCCC-CCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 201 SPHKLYVGNLSWA-VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 201 ~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
..++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3589999999999 999999999999999999998 5789999999999999999 79999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
+++.
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8543
No 331
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=7.1e-17 Score=127.77 Aligned_cols=81 Identities=27% Similarity=0.383 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|||+.+++++|+++|++||.|..|.|..+. ++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 8999999999999999999999 59999999999999999
Q ss_pred cCC
Q 023297 279 VDR 281 (284)
Q Consensus 279 ~~k 281 (284)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 765
No 332
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.68 E-value=7.1e-17 Score=118.79 Aligned_cols=74 Identities=23% Similarity=0.314 Sum_probs=66.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCce-----eE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE-----MR 172 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~-----l~ 172 (284)
..++|||+|||+++++++|+++|++||.|..+.|+.+ |||||+|.+.++|++||+.|||..++|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4589999999999999999999999999999999765 89999999999999999999999999998 66
Q ss_pred EEEccc
Q 023297 173 VRFSID 178 (284)
Q Consensus 173 v~~~~~ 178 (284)
|....+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666654
No 333
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=9.2e-17 Score=117.99 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=67.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET---GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
..++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++|++.|++ ++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEec
Confidence 458999999999999999999999999999 888887776 79999999999999999999998843 677777776
Q ss_pred Ecc
Q 023297 175 FSI 177 (284)
Q Consensus 175 ~~~ 177 (284)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 334
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=112.50 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
..++|||+|||+.+++++|+++|++||.|..| +.+..+++ ||||+|.+.++|.+|++|||..+.|+.|.|.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 35789999999999999999999999999987 55655555 99999999999999999999999999999999987
Q ss_pred CCC
Q 023297 281 RTE 283 (284)
Q Consensus 281 k~~ 283 (284)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 335
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=1.8e-16 Score=122.30 Aligned_cols=78 Identities=26% Similarity=0.304 Sum_probs=70.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC--ceeEEEEc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFS 176 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 176 (284)
..+|||+||++.+++++|+++|++||.|.+|++..+ .++|||||+|.+.++|++|++.|||..+.| +.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 367999999999999999999999999999998754 257899999999999999999999999965 99999999
Q ss_pred ccCC
Q 023297 177 IDMN 180 (284)
Q Consensus 177 ~~~~ 180 (284)
....
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 7653
No 336
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=8.7e-16 Score=113.66 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=67.2
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCCCCC--ceeEEEEc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC-GYLTMGSINSAKNAIIALDGSDVGG--REMRVRFS 176 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 176 (284)
-.|||+||++.+++++|+++|++||.|.+|+|... .|| |||+|.+.++|.+|++.|||..+.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34689999999999999999999999999999652 286 9999999999999999999999987 69999999
Q ss_pred ccCC
Q 023297 177 IDMN 180 (284)
Q Consensus 177 ~~~~ 180 (284)
....
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 337
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=1.8e-16 Score=117.82 Aligned_cols=75 Identities=27% Similarity=0.353 Sum_probs=68.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCCCCC--ceeEEEEc
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC-GYLTMGSINSAKNAIIALDGSDVGG--REMRVRFS 176 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 176 (284)
-.|||+||++.+|+++|+++|++||.|.+|.+..+ .+|| |||+|.+.++|.+|++.|||..+.| +.|+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 56889999999999999999999999999998764 3677 9999999999999999999999988 99999999
Q ss_pred ccC
Q 023297 177 IDM 179 (284)
Q Consensus 177 ~~~ 179 (284)
...
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 338
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.68 E-value=3.7e-16 Score=112.72 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHhhccCCceEEEEEeecCCC-CCcceEEEEEeCCHHHHHHHH-HhCCCccCCce
Q 023297 200 ESPHKLYVGNLSW-----AVKPEDLRNHFGRFGTVVSARVLHDRKG-QTTRVFGFISFSSDAERDAAL-SLNGTDFRGRT 272 (284)
Q Consensus 200 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~ 272 (284)
.+.++|+|.|+.. +.++++|++.|++||.|.+|.|++++.+ ++++|+|||+|.+.++|.+|+ +|||+.|.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568999999963 2378999999999999999999998654 689999999999999999999 79999999999
Q ss_pred EEEEeccC
Q 023297 273 IIVREGVD 280 (284)
Q Consensus 273 l~v~~a~~ 280 (284)
|.|.|+.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 339
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=113.09 Aligned_cols=78 Identities=26% Similarity=0.257 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEE-EEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA-RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
..++|||+|||+.+++++|+++|.+||.|..+ .++.++.++ .|||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45889999999999999999999999999999 488776543 3999999999999999 69999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9885
No 340
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=1.3e-16 Score=111.78 Aligned_cols=76 Identities=18% Similarity=0.336 Sum_probs=62.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC--CCceeEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV--GGREMRV 173 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~g~~l~v 173 (284)
....++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|.+ +++..+ .|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345689999999999999999999999999999999874 78999999999999984 456554 5999999
Q ss_pred EEcccCC
Q 023297 174 RFSIDMN 180 (284)
Q Consensus 174 ~~~~~~~ 180 (284)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9987543
No 341
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.8e-16 Score=111.29 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|+ .+++++|+++|++||.|..|.+. +++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35689999995 89999999999999999999984 46889999999999999999 79999999999999999
Q ss_pred cCCCC
Q 023297 279 VDRTE 283 (284)
Q Consensus 279 ~~k~~ 283 (284)
.++..
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 88753
No 342
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=7.7e-16 Score=113.92 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=66.8
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceE-EEEEeCCHHHHHHHH-HhCCCccCC--ceEEEEec
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF-GFISFSSDAERDAAL-SLNGTDFRG--RTIIVREG 278 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~a~-~l~g~~~~g--~~l~v~~a 278 (284)
..|||+||++.+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|..|+ +|||..|.| +.|+|.||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34689999999999999999999999999999652 276 999999999999999 799999987 69999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9875
No 343
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.4e-17 Score=117.58 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=68.9
Q ss_pred CCCcEEEE--cCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCcc-----CCc
Q 023297 200 ESPHKLYV--GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF-----RGR 271 (284)
Q Consensus 200 ~~~~~l~v--~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~-----~g~ 271 (284)
.+.++||| +||++.+++++|+++|++||.|..|.++. .+|||||+|.+.++|.+|+ +|||+++ .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 34688999 77999999999999999999999998763 2789999999999999999 6999988 789
Q ss_pred eEEEEeccCCC
Q 023297 272 TIIVREGVDRT 282 (284)
Q Consensus 272 ~l~v~~a~~k~ 282 (284)
.|.|.|++...
T Consensus 97 ~l~v~~a~~~p 107 (114)
T 2cq2_A 97 TLYLNFVEKVQ 107 (114)
T ss_dssp ECEEEEESCCC
T ss_pred EEEEEecccCc
Confidence 99999998654
No 344
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.1e-16 Score=111.91 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
..++|||+|||+.+++++|+++|++| .|..+.+. +++|||||+|.+.++|.+|+ .|||..++|+.|+|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45889999999999999999999999 99999884 57899999999999999999 699999999999999997
Q ss_pred CC
Q 023297 280 DR 281 (284)
Q Consensus 280 ~k 281 (284)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 345
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.6e-17 Score=125.94 Aligned_cols=83 Identities=25% Similarity=0.383 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEE--E---eecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceE
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSAR--V---LHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~--i---~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l 273 (284)
.+.++|||+|||+.+++++|+++|++||.|..+. + ++...+|+++|||||+|.+.++|.+|+ .|||..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4568999999999999999999999999887641 0 111236889999999999999999999 699999999999
Q ss_pred EEEeccCCC
Q 023297 274 IVREGVDRT 282 (284)
Q Consensus 274 ~v~~a~~k~ 282 (284)
.|.|++++.
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999997654
No 346
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=4.6e-16 Score=112.21 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHhhccCCceEEEEEEeCCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcee
Q 023297 98 RPCELYVCNLPR-----SFDISELLEMFKPFGTVLSVEVSRNPET-GISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (284)
Q Consensus 98 ~~~~l~v~nl~~-----~~t~~~l~~~f~~~G~i~~~~~~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (284)
.+++|+|+||.. +-++++|++.|++||.|.++.|+.++.+ +.++|||||+|.+.++|.+|++.|||..++||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 458999999973 2368999999999999999999998654 6899999999999999999999999999999999
Q ss_pred EEEEccc
Q 023297 172 RVRFSID 178 (284)
Q Consensus 172 ~v~~~~~ 178 (284)
+|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999863
No 347
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=2.1e-16 Score=116.25 Aligned_cols=75 Identities=28% Similarity=0.383 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCce-----EE
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRT-----II 274 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~-----l~ 274 (284)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+|+ .|||..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3588999999999999999999999999999999766 79999999999999999 69999999998 88
Q ss_pred EEeccCCC
Q 023297 275 VREGVDRT 282 (284)
Q Consensus 275 v~~a~~k~ 282 (284)
|..+.++.
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 88877654
No 348
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=1.5e-16 Score=111.01 Aligned_cols=71 Identities=25% Similarity=0.558 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC----C-------ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPF----G-------TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~----G-------~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (284)
..++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 35899999999999999999999999 8 8999998754 799999999999999999 9999999
Q ss_pred CCceeEEEE
Q 023297 167 GGREMRVRF 175 (284)
Q Consensus 167 ~g~~l~v~~ 175 (284)
.|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999975
No 349
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=5.7e-16 Score=114.84 Aligned_cols=77 Identities=23% Similarity=0.479 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEE
Q 023297 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (284)
....++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|++.|+|..+.|+.|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345689999996 79999999999999999999985 3689999999999999999999999999999999999
Q ss_pred cccCC
Q 023297 176 SIDMN 180 (284)
Q Consensus 176 ~~~~~ 180 (284)
+....
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 97653
No 350
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=8.3e-16 Score=123.38 Aligned_cols=78 Identities=12% Similarity=0.216 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
.++|||+|||+.+++++|+++|++||.|..|+++++. ++.++|||||+|.+.++|.+|+++.+..++|+.|.|.|+.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 4889999999999999999999999999999999987 58999999999999999999997666799999999999875
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=8.8e-16 Score=123.21 Aligned_cols=80 Identities=20% Similarity=0.339 Sum_probs=72.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEccc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 178 (284)
.++|||+|||+++++++|+++|++||.|.+|+++++. +|.++|||||+|.+.++|.+|++.+ +..++|+.|.|.+..+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4899999999999999999999999999999999985 5999999999999999999999654 5689999999999875
Q ss_pred CC
Q 023297 179 MN 180 (284)
Q Consensus 179 ~~ 180 (284)
..
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 352
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2e-16 Score=110.61 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=65.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
..++|||+|||.++++++|+++|++||.|.+++++.+ ++|||||+|.+.++|++++. ....+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 4589999999999999999999999999999998765 68999999999999976432 1234589999999987
Q ss_pred cCCc
Q 023297 178 DMNS 181 (284)
Q Consensus 178 ~~~~ 181 (284)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 353
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.1e-16 Score=113.23 Aligned_cols=79 Identities=19% Similarity=0.447 Sum_probs=67.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCC---CCcceEEEEEeCCHHHHHHHH-Hh---CCC------
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG---QTTRVFGFISFSSDAERDAAL-SL---NGT------ 266 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~a~-~l---~g~------ 266 (284)
...++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|+ .| ||+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 3458899999999999999999999999999 888888766 799999999999999999999 56 666
Q ss_pred --ccCCceEEEEecc
Q 023297 267 --DFRGRTIIVREGV 279 (284)
Q Consensus 267 --~~~g~~l~v~~a~ 279 (284)
.+.++.++|....
T Consensus 85 ~~~~~~~~~~v~p~~ 99 (114)
T 2dnl_A 85 SPTIKDKPVQIRPWN 99 (114)
T ss_dssp CSSSCSEEEEEECCC
T ss_pred CCCcCCCeeeccCCc
Confidence 4556666665433
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-16 Score=109.75 Aligned_cols=77 Identities=17% Similarity=0.395 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEEEeccC
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIVREGVD 280 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v~~a~~ 280 (284)
..++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|... +..+.|+.|+|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4589999999999999999999999999999999864 688999999999999765422 3455999999999998
Q ss_pred CCC
Q 023297 281 RTE 283 (284)
Q Consensus 281 k~~ 283 (284)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.4e-15 Score=112.76 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEec
Q 023297 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREG 278 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a 278 (284)
...++|||+|+ .+++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45689999995 69999999999999999999985 46889999999999999999 79999999999999999
Q ss_pred cCCC
Q 023297 279 VDRT 282 (284)
Q Consensus 279 ~~k~ 282 (284)
.++.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9875
No 356
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.1e-15 Score=106.45 Aligned_cols=71 Identities=30% Similarity=0.655 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC----C-------ceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccC
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRF----G-------TVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFR 269 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~ 269 (284)
..++|||+|||+.+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+.|||..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 35899999999999999999999999 8 8999998754 78999999999999999999999999
Q ss_pred CceEEEEe
Q 023297 270 GRTIIVRE 277 (284)
Q Consensus 270 g~~l~v~~ 277 (284)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999975
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=2.3e-15 Score=123.63 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 023297 96 RARPCELYVCNLPRSF---------DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~---------t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (284)
....++|||+||+..+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 7999999999999999999986 489999999999999999999999999
Q ss_pred ------------CCceeEEEEcccCC
Q 023297 167 ------------GGREMRVRFSIDMN 180 (284)
Q Consensus 167 ------------~g~~l~v~~~~~~~ 180 (284)
.|+.|.|.|+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.6e-15 Score=106.79 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=69.1
Q ss_pred CCCcEEEEcCCCCCCC-----------HHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCc
Q 023297 200 ESPHKLYVGNLSWAVK-----------PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTD 267 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~ 267 (284)
.+.++|+|.||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+ .|||+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4568999999954432 6899999999999999966 554 37999999999999999999 799999
Q ss_pred cCCceEEEEeccCCCC
Q 023297 268 FRGRTIIVREGVDRTE 283 (284)
Q Consensus 268 ~~g~~l~v~~a~~k~~ 283 (284)
|.|+.|+|.|+.++++
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999988753
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=5.9e-15 Score=106.43 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=70.0
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHhhccCCceEEEEEeecCCC--CCcceEEEEEeCCHHHHHHHH-HhCCC
Q 023297 200 ESPHKLYVGNL--SWAVK--------PEDLRNHFGRFGTVVSARVLHDRKG--QTTRVFGFISFSSDAERDAAL-SLNGT 266 (284)
Q Consensus 200 ~~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~v~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~a~-~l~g~ 266 (284)
.+.+.|.|.|+ +..+. +++|++.|++||.|.+|.|+++..+ ++++|+|||+|.+.++|.+|+ +|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35688999998 33333 4799999999999999999988754 468999999999999999999 79999
Q ss_pred ccCCceEEEEeccC
Q 023297 267 DFRGRTIIVREGVD 280 (284)
Q Consensus 267 ~~~g~~l~v~~a~~ 280 (284)
.|+||.|+|.|+..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 360
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.56 E-value=5.5e-15 Score=121.44 Aligned_cols=77 Identities=22% Similarity=0.437 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCCC---------CHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCcc-
Q 023297 200 ESPHKLYVGNLSWAV---------KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF- 268 (284)
Q Consensus 200 ~~~~~l~v~nl~~~~---------~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~- 268 (284)
...++|||+||+..+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|..|+ +|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 456899999999998 7999999999999999999985 4789999999999999999 7999999
Q ss_pred -----------CCceEEEEeccCCC
Q 023297 269 -----------RGRTIIVREGVDRT 282 (284)
Q Consensus 269 -----------~g~~l~v~~a~~k~ 282 (284)
.|+.|.|.||.++.
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999998764
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.4e-14 Score=104.67 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCC-----------HHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 023297 96 RARPCELYVCNLPRSFD-----------ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164 (284)
Q Consensus 96 ~~~~~~l~v~nl~~~~t-----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 164 (284)
....++|+|.||..... +++|+++|++||.|.++.| .+. .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34568999999954432 5799999999999999966 553 37999999999999999999999999
Q ss_pred CCCCceeEEEEcccCC
Q 023297 165 DVGGREMRVRFSIDMN 180 (284)
Q Consensus 165 ~~~g~~l~v~~~~~~~ 180 (284)
.++|+.|+|.++.+..
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999997543
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.55 E-value=1.4e-14 Score=106.53 Aligned_cols=79 Identities=22% Similarity=0.332 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCC-----CCCHHHHHHhhccCCceEEEEEeecCC----CCCcceEEEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 201 SPHKLYVGNLSW-----AVKPEDLRNHFGRFGTVVSARVLHDRK----GQTTRVFGFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 201 ~~~~l~v~nl~~-----~~~~~~l~~~f~~~G~v~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
+.++|+|.|+-. +-.+++|++.|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|+ +|||+.|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 568899999842 224789999999999999999999864 3567899999999999999999 799999999
Q ss_pred ceEEEEecc
Q 023297 271 RTIIVREGV 279 (284)
Q Consensus 271 ~~l~v~~a~ 279 (284)
|.|+|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999975
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=1.2e-14 Score=104.80 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=69.7
Q ss_pred CCCeEEEcCC--CCCCC--------HHHHHHhhccCCceEEEEEEeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 023297 98 RPCELYVCNL--PRSFD--------ISELLEMFKPFGTVLSVEVSRNPET--GISRGCGYLTMGSINSAKNAIIALDGSD 165 (284)
Q Consensus 98 ~~~~l~v~nl--~~~~t--------~~~l~~~f~~~G~i~~~~~~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~ 165 (284)
+++.|.|.|+ |..+. +++|++.|++||.|.+++|+++..+ +.++|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578999998 33333 3689999999999999999988654 4689999999999999999999999999
Q ss_pred CCCceeEEEEcc
Q 023297 166 VGGREMRVRFSI 177 (284)
Q Consensus 166 ~~g~~l~v~~~~ 177 (284)
++||.|+|.++.
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999985
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.53 E-value=2.6e-14 Score=104.99 Aligned_cols=80 Identities=18% Similarity=0.154 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCC--C---CHHHHHHhhccCCceEEEEEEeCCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC
Q 023297 98 RPCELYVCNLPRS--F---DISELLEMFKPFGTVLSVEVSRNPE----TGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168 (284)
Q Consensus 98 ~~~~l~v~nl~~~--~---t~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (284)
++++|+|.|+-.. + -++||++.|++||.|.+++|+.+.. ++.++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 4589999999432 2 3689999999999999999998754 45788999999999999999999999999999
Q ss_pred ceeEEEEcc
Q 023297 169 REMRVRFSI 177 (284)
Q Consensus 169 ~~l~v~~~~ 177 (284)
|.|+|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999985
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=2.9e-15 Score=107.87 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=64.0
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCcee
Q 023297 104 VCNLPRSFDISELLEMF------------KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (284)
Q Consensus 104 v~nl~~~~t~~~l~~~f------------~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (284)
+.|||..+++++|++.| ++||.|.++.|+++. +++++|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778887777666 999999999999875 48899999999999999999999999999999999
Q ss_pred EEEEc
Q 023297 172 RVRFS 176 (284)
Q Consensus 172 ~v~~~ 176 (284)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.51 E-value=4.4e-15 Score=106.95 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=61.5
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceE
Q 023297 207 VGNLSWAVKPEDLRNHF------------GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTI 273 (284)
Q Consensus 207 v~nl~~~~~~~~l~~~f------------~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l 273 (284)
+.||++.+++++|++.| ++||.|.+|.|+++. .++++|||||+|.+.++|.+|+ .|||+.++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666776666555 999999999999886 4789999999999999999999 799999999999
Q ss_pred EEEec
Q 023297 274 IVREG 278 (284)
Q Consensus 274 ~v~~a 278 (284)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=6.3e-13 Score=94.59 Aligned_cols=65 Identities=9% Similarity=0.112 Sum_probs=57.7
Q ss_pred CCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEeccCCCC
Q 023297 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGVDRTE 283 (284)
Q Consensus 212 ~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~~k~~ 283 (284)
..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|..|+ .+++ +.|+.|+|.|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 568999999999999999999997 367999999999999999999 4544 6899999999988753
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1e-12 Score=93.42 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=61.8
Q ss_pred CeEEEcCCC-------CCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 100 CELYVCNLP-------RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 100 ~~l~v~nl~-------~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
++|-|.-.. ..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|++|++.+++ +.|+.|+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 456555443 458999999999999999999997 35799999999999999999987544 6799999
Q ss_pred EEEcccCC
Q 023297 173 VRFSIDMN 180 (284)
Q Consensus 173 v~~~~~~~ 180 (284)
|.|+....
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99987554
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.41 E-value=6.2e-13 Score=96.97 Aligned_cols=76 Identities=18% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCCCC----------CHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccC
Q 023297 201 SPHKLYVGNLSWAV----------KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFR 269 (284)
Q Consensus 201 ~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~ 269 (284)
+.++|.|.|+-... .+++|++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|+ .|||+.|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45788999984322 246899999999999999997653 5899999999999999999 79999999
Q ss_pred CceEEEEeccC
Q 023297 270 GRTIIVREGVD 280 (284)
Q Consensus 270 g~~l~v~~a~~ 280 (284)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.39 E-value=1.6e-12 Score=94.82 Aligned_cols=79 Identities=20% Similarity=0.251 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCC----------HHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCC
Q 023297 97 ARPCELYVCNLPRSFD----------ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t----------~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (284)
..++.|.+.|+-.... ++||++.|++||.|.++.|.++. .+|+|||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3457889998855432 34789999999999999986652 589999999999999999999999999
Q ss_pred CCceeEEEEcccC
Q 023297 167 GGREMRVRFSIDM 179 (284)
Q Consensus 167 ~g~~l~v~~~~~~ 179 (284)
+||.|+|.++...
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999998643
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=6.7e-13 Score=114.73 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=65.1
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC---Cc-
Q 023297 96 RARPCELYVCN--LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG---GR- 169 (284)
Q Consensus 96 ~~~~~~l~v~n--l~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~- 169 (284)
..++.+|||+| |++.+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44568999999 578999999999999999999987643 4799999999999999999999999873 55
Q ss_pred -eeEEEEcc
Q 023297 170 -EMRVRFSI 177 (284)
Q Consensus 170 -~l~v~~~~ 177 (284)
.|.+.+..
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777763
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=1.1e-12 Score=113.26 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=64.7
Q ss_pred cCCCcEEEEcC--CCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCcc---CCc-
Q 023297 199 YESPHKLYVGN--LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDF---RGR- 271 (284)
Q Consensus 199 ~~~~~~l~v~n--l~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~---~g~- 271 (284)
..+.++|||+| |++.+++++|+++|++||.|.+|.+.. +||||||+|.+.++|.+|+ +|||+++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 35678999999 578999999999999999999987753 4789999999999999999 7999987 345
Q ss_pred -eEEEEecc
Q 023297 272 -TIIVREGV 279 (284)
Q Consensus 272 -~l~v~~a~ 279 (284)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888874
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.6e-11 Score=84.10 Aligned_cols=74 Identities=26% Similarity=0.361 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCC----CCCCH----HHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCc
Q 023297 200 ESPHKLYVGNLS----WAVKP----EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGR 271 (284)
Q Consensus 200 ~~~~~l~v~nl~----~~~~~----~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~ 271 (284)
.+..||+|...+ ..+.. .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++|||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCe
Confidence 345778888766 23434 6799999999999999999875 8999999999999999999999999
Q ss_pred eEEEEeccCC
Q 023297 272 TIIVREGVDR 281 (284)
Q Consensus 272 ~l~v~~a~~k 281 (284)
.|+|+++.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999999864
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=5.2e-11 Score=86.95 Aligned_cols=77 Identities=12% Similarity=0.110 Sum_probs=68.2
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCCCCCce
Q 023297 95 SRARPCELYVCNLPRS-FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS-INSAKNAIIALD--GSDVGGRE 170 (284)
Q Consensus 95 ~~~~~~~l~v~nl~~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~--~~~~~g~~ 170 (284)
....++.|||+||+.. +++++|+++|++||+|..|.+..+.. .|||+|.+ +++|..|++.|+ +..+.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456799999999999 99999999999999999999988754 59999999 899999999995 67788999
Q ss_pred eEEEEcc
Q 023297 171 MRVRFSI 177 (284)
Q Consensus 171 l~v~~~~ 177 (284)
++++...
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8888764
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.6e-10 Score=84.33 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=66.0
Q ss_pred ccCCCcEEEEcCCCCC-CCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCC-HHHHHHHH-Hh--CCCccCCce
Q 023297 198 VYESPHKLYVGNLSWA-VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAAL-SL--NGTDFRGRT 272 (284)
Q Consensus 198 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~a~-~l--~g~~~~g~~ 272 (284)
....++.|||+||++. +++++|+++|++||.|..|.+.++.. .|||+|.+ ..+|..|+ ++ +|..|.|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456799999999999 99999999999999999999998875 39999999 89999999 67 577899998
Q ss_pred EEEEec
Q 023297 273 IIVREG 278 (284)
Q Consensus 273 l~v~~a 278 (284)
+++..-
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 888654
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=9.4e-11 Score=80.27 Aligned_cols=73 Identities=22% Similarity=0.300 Sum_probs=62.0
Q ss_pred CCCeEEEcCCCC----CCCH----HHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCc
Q 023297 98 RPCELYVCNLPR----SFDI----SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR 169 (284)
Q Consensus 98 ~~~~l~v~nl~~----~~t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (284)
+..+|+|.-.+. +.-+ .+|.+.|.+||.|..++++.+. +||+|.+.++|.+|++ |||..+.||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 447888887762 3333 5789999999999999998873 8999999999999996 999999999
Q ss_pred eeEEEEcccC
Q 023297 170 EMRVRFSIDM 179 (284)
Q Consensus 170 ~l~v~~~~~~ 179 (284)
.|+|+++.+.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998753
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.05 E-value=4.9e-10 Score=91.64 Aligned_cols=66 Identities=24% Similarity=0.391 Sum_probs=59.7
Q ss_pred CCHHHHHHhhccCCceEEEEEeecCC----CCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEEEEecc
Q 023297 214 VKPEDLRNHFGRFGTVVSARVLHDRK----GQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTIIVREGV 279 (284)
Q Consensus 214 ~~~~~l~~~f~~~G~v~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~v~~a~ 279 (284)
-.+++|++.|.+||.|.++.|+++.. +++++|++||+|.+.++|.+|+ .|||+.|+||.|.+.|+.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 45789999999999999999986644 4589999999999999999999 799999999999999975
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=2.9e-10 Score=78.21 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=62.6
Q ss_pred CCCcEEEEcCCCCC-----CCH----HHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCC
Q 023297 200 ESPHKLYVGNLSWA-----VKP----EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRG 270 (284)
Q Consensus 200 ~~~~~l~v~nl~~~-----~~~----~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g 270 (284)
.+..||+|..++.. +.. .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++|||..++|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 45678999888643 333 5688999999999999999885 999999999999999999999999
Q ss_pred ceEEEEeccC
Q 023297 271 RTIIVREGVD 280 (284)
Q Consensus 271 ~~l~v~~a~~ 280 (284)
|.|+|++..+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998654
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.02 E-value=7.5e-10 Score=90.54 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=59.9
Q ss_pred CHHHHHHhhccCCceEEEEEEeCCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEEEcc
Q 023297 112 DISELLEMFKPFGTVLSVEVSRNPE----TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (284)
Q Consensus 112 t~~~l~~~f~~~G~i~~~~~~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 177 (284)
.+++|++.|++||.|.++.++.+.. ++.++|++||+|.+.++|.+|++.|||..++||.|.+.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4678999999999999999985533 45899999999999999999999999999999999999985
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.96 E-value=1.2e-09 Score=76.59 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC-----CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRF-----GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
..++|-+.|||..+++..|+.+.+++ |.+.++.+..|.+. |+|+|.+...|.+|. +|||.+|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G------Aivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG------AIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE------EEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc------eEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35889999999999999999999999 99999999988643 999999999999998 8999999999999
Q ss_pred EE
Q 023297 275 VR 276 (284)
Q Consensus 275 v~ 276 (284)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 86
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=3.3e-10 Score=77.90 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=60.9
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 023297 97 ARPCELYVCNLPRS-----FDI----SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (284)
Q Consensus 97 ~~~~~l~v~nl~~~-----~t~----~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (284)
++..+|+|.-++.. +-+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+ |+|..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34579999888643 222 4688999999999999999873 9999999999999996 9999999
Q ss_pred CceeEEEEcc
Q 023297 168 GREMRVRFSI 177 (284)
Q Consensus 168 g~~l~v~~~~ 177 (284)
||.|+|++..
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999998753
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.62 E-value=1.1e-07 Score=66.71 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=66.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccC-----CceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeE
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPF-----GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~-----G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (284)
..++|-+-|||-.+++..|+.+++.+ |.+..+.+..|. |=|+|+|.+...|-+|.-.|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35889999999999999999999999 999999999883 3499999999999999999999999999999
Q ss_pred EEEc
Q 023297 173 VRFS 176 (284)
Q Consensus 173 v~~~ 176 (284)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9654
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=8.2e-06 Score=56.75 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhcc-----CCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 99 PCELYVCNLPRSFDISELLEMFKP-----FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~-----~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
..+|.|.|||..+.++.|.-+|+. -|+|.++.... +-|+|+|.+.+.|++.+ .-..+.++|..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL-~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVL-AQADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHH-TCSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHh-cCCcceecCeEEEE
Confidence 478999999999999999999976 25788877643 35899999999999999 55578899999999
Q ss_pred EEcccCCcccccccccCCCCCCccccCCCcEEEEcCCCCCCC
Q 023297 174 RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215 (284)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 215 (284)
....+.. ..+|++.+|+..++
T Consensus 79 ~P~~~~~---------------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPRA---------------------PARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCCC---------------------CCCCCCCSCCCCCC
T ss_pred EcCCCCC---------------------cceEeeecCCCCCC
Confidence 7764322 35677888877654
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=1.3e-05 Score=56.02 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=61.9
Q ss_pred CCcEEEEcCCCCCCC-----HHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhCCCccCCceEE
Q 023297 201 SPHKLYVGNLSWAVK-----PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTDFRGRTII 274 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~-----~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~g~~~~g~~l~ 274 (284)
.+++|+|.||+..+- .+.++++|..|+.+.....++.-. -..|.|.+.++|.+|. .||+..+.|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 358899999987552 267899999999887777776532 2799999999999999 7999999999999
Q ss_pred EEeccC
Q 023297 275 VREGVD 280 (284)
Q Consensus 275 v~~a~~ 280 (284)
|-|+.+
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999874
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=0.0001 Score=51.28 Aligned_cols=74 Identities=24% Similarity=0.258 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhcc---C--CceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCCceEEE
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGR---F--GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRGRTIIV 275 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~---~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g~~l~v 275 (284)
..++|.|.|||..+.++.|.-+|+. - |.|..+..... -|+|+|.+.+.|++.++-....+.|..|.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~--------~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC--------GGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT--------EEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC--------cEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 3578999999999999999999986 2 56888888651 399999999999999987778899999999
Q ss_pred EeccCCC
Q 023297 276 REGVDRT 282 (284)
Q Consensus 276 ~~a~~k~ 282 (284)
....++.
T Consensus 79 ~P~~~~~ 85 (104)
T 2dhx_A 79 RPAPPRA 85 (104)
T ss_dssp EECCCCC
T ss_pred EcCCCCC
Confidence 8776653
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.84 E-value=6.9e-05 Score=51.43 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=56.9
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCC--cccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI--SRGCGYLTMGSINSAKNAIIALDGSDVG 167 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (284)
++|.|++||+.+|++++.+.+..+..+.....+..+.+.+ ...-|||.|.+.+++....+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999998887777766544322 2256899999999999999999999874
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=5.5e-05 Score=52.84 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=63.3
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEE
Q 023297 99 PCELYVCNLPRSF-D----ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (284)
Q Consensus 99 ~~~l~v~nl~~~~-t----~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (284)
.++|+|.||+.++ . .+.++++|..|+++......+. -+=..|.|.++++|.+|-..|++..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4789999998876 2 2578999999999888777664 224789999999999999999999999999999
Q ss_pred EEccc
Q 023297 174 RFSID 178 (284)
Q Consensus 174 ~~~~~ 178 (284)
-++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99973
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00028 Score=50.66 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=58.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCccCC-ceEEEEecc
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDFRG-RTIIVREGV 279 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~~g-~~l~v~~a~ 279 (284)
.+-|.|.+.|... ...|...|++||.|.+..... ...+-.|.|.+..+|++||..||..+.| -.|-|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 4779999999874 678889999999999887621 1237899999999999999999999975 667777754
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.57 E-value=0.0005 Score=47.22 Aligned_cols=57 Identities=18% Similarity=0.419 Sum_probs=47.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023297 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162 (284)
Q Consensus 97 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (284)
...+.++| +.|+.+...||.++|+.||.| .|+.+-| ..|||.|.+++.|..|+..+.
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 34467777 999999999999999999955 5555555 269999999999999997663
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.28 E-value=0.0012 Score=45.27 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=55.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCC--cceEEEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT--TRVFGFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
++|.|++||..++++++.+.++....+..........+.+ .-.-|+|.|.+.+++.... .++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4689999999999999999999998877777766654332 2356899999999998888 699998743
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.07 E-value=0.0024 Score=45.84 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=58.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCC-ceeEEEEcc
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG-REMRVRFSI 177 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~~ 177 (284)
.+-|.|-+.|+.. ...|...|++||.|.+.... ....+-.|.|.+..+|++|| ..||..++| ..|-|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECC
Confidence 4789999999985 56777889999999987752 12458999999999999999 789999974 667777764
Q ss_pred c
Q 023297 178 D 178 (284)
Q Consensus 178 ~ 178 (284)
+
T Consensus 96 d 96 (119)
T 1wwh_A 96 D 96 (119)
T ss_dssp C
T ss_pred C
Confidence 3
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.05 E-value=0.00055 Score=47.24 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=51.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCC--cccEEEEEeCCHHHHHHHHHHhCCCCCC
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI--SRGCGYLTMGSINSAKNAIIALDGSDVG 167 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (284)
.-+|.|+.||+.+|++++.+.+..+=.+.....+....+.+ .-.-|||.|.+.++...-.+.++|+.+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 35799999999999999998887765544333333222211 1245899999999999999999998873
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.95 E-value=0.0011 Score=45.58 Aligned_cols=54 Identities=19% Similarity=0.430 Sum_probs=45.3
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (284)
+.++| +.|+.+...||.++|+.||.| .|..+-| ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 56677 999999999999999999943 5555554 269999999999999998764
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.76 E-value=0.0043 Score=42.60 Aligned_cols=52 Identities=27% Similarity=0.397 Sum_probs=42.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 262 (284)
...++| ++|..+...||.++|.+||. ..|+.+-|. -|||.|.+++.|..|+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 355677 99999999999999999984 345555553 49999999999999994
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.61 E-value=0.0014 Score=47.66 Aligned_cols=77 Identities=21% Similarity=0.190 Sum_probs=55.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEE-EEEeecC-----------CCC--CcceEEEEEeCCHHHHHHHHHhCCCc
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVS-ARVLHDR-----------KGQ--TTRVFGFISFSSDAERDAALSLNGTD 267 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~-v~i~~~~-----------~~~--~~~g~afV~f~~~~~A~~a~~l~g~~ 267 (284)
..-|.|.+.|.. ....+-+.|++||.|.+ +...+.. ... ....+..|+|.+..+|.+|+..||..
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 356888888765 45677888999998665 2221100 000 12457899999999999999999999
Q ss_pred cCCceEEEEecc
Q 023297 268 FRGRTIIVREGV 279 (284)
Q Consensus 268 ~~g~~l~v~~a~ 279 (284)
|.|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999999888775
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.48 E-value=0.0043 Score=42.74 Aligned_cols=51 Identities=27% Similarity=0.406 Sum_probs=42.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHH
Q 023297 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262 (284)
Q Consensus 203 ~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 262 (284)
..++| ++|..+...||.++|.+||. ..|..+-|. -|||.|.+++.|..|+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 45666 99999999999999999983 445555553 49999999999999994
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.00 E-value=0.0042 Score=45.18 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=55.0
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEE-EEEEeC--------CCCC-----CcccEEEEEeCCHHHHHHHHHHhCCCC
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLS-VEVSRN--------PETG-----ISRGCGYLTMGSINSAKNAIIALDGSD 165 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~-~~~~~~--------~~~~-----~~~g~afv~f~~~~~a~~a~~~l~~~~ 165 (284)
..|.|-+.|+..+. .+.+.|++||.|.+ +.+... +... .......|+|.+..+|.+|+ ..||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 56788888777664 56677999999865 221110 0000 13467799999999999999 889999
Q ss_pred CCCceeEEEEcc
Q 023297 166 VGGREMRVRFSI 177 (284)
Q Consensus 166 ~~g~~l~v~~~~ 177 (284)
+.|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888774
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.77 E-value=0.0048 Score=55.14 Aligned_cols=62 Identities=6% Similarity=0.144 Sum_probs=44.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHHHhCCCcc
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTDF 268 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~l~g~~~ 268 (284)
..+.|+|. .+..+++.+|.++|.+||.|.++....+. | -||+|+|.+.+++..++...+...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSSCCCCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhccCCCc
Confidence 34789998 79999999999999999999999887653 2 499999999999998874434333
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.77 E-value=0.01 Score=40.90 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=49.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCC--cceEEEEEeCCHHHHHHHH-HhCCCccCC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT--TRVFGFISFSSDAERDAAL-SLNGTDFRG 270 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~a~-~l~g~~~~g 270 (284)
.-+|.|+.||..++++++.+.++..-.+..........+.+ .-.-|+|.|.+.++..... .++|..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35689999999999999999998765543333322222211 1234899999999999988 699998743
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.63 E-value=0.0053 Score=54.83 Aligned_cols=54 Identities=9% Similarity=0.088 Sum_probs=41.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH
Q 023297 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158 (284)
Q Consensus 99 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 158 (284)
.+.|||. .|..+++.+|.++|++||+|.++.+-.+. .-||.|+|.+.+++..++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHH
Confidence 4789997 79999999999999999999998887642 269999999999999776
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.72 E-value=1.5 Score=39.75 Aligned_cols=56 Identities=18% Similarity=0.423 Sum_probs=45.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHhhccCCceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 023297 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162 (284)
Q Consensus 98 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (284)
....++|+ +|..+...+|.++|+.||.+ +|+.+-+ ..|||.|.+.+.|..+++.+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 45677776 99999999999999999964 4444433 369999999999999998875
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=77.23 E-value=5.1 Score=36.22 Aligned_cols=54 Identities=26% Similarity=0.362 Sum_probs=41.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH-HhC
Q 023297 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN 264 (284)
Q Consensus 202 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~-~l~ 264 (284)
...++|+ +|..|...+|.+.|+.||.+ .|+.+-+ + .|||.|.+.+.|..++ .++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd--t-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS--S-----EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC--C-----eEEEEECCHHHHHHHHHHHH
Confidence 3556666 88999999999999999953 4444333 2 4999999999999999 564
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.82 E-value=39 Score=21.27 Aligned_cols=67 Identities=10% Similarity=0.286 Sum_probs=40.9
Q ss_pred eEEEcCCCC-CCCHHHHHHhhccCC-----ceEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCCCCceeEEE
Q 023297 101 ELYVCNLPR-SFDISELLEMFKPFG-----TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (284)
Q Consensus 101 ~l~v~nl~~-~~t~~~l~~~f~~~G-----~i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (284)
++||..=-. .+...+|..++..-+ .|-.+.+..+ |.||+-.. +.+..+++.|++..+.|+.+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 355532222 366677777776443 3556666432 68888775 45778888999999999999987
Q ss_pred Ec
Q 023297 175 FS 176 (284)
Q Consensus 175 ~~ 176 (284)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=43.24 E-value=1e+02 Score=23.20 Aligned_cols=55 Identities=20% Similarity=0.218 Sum_probs=36.0
Q ss_pred EEEEcCCCC---------CCCHHHHHHhh--ccCCceEEEEEeecCCCCCcceEEEEEeCCH-HHHHHHH
Q 023297 204 KLYVGNLSW---------AVKPEDLRNHF--GRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAAL 261 (284)
Q Consensus 204 ~l~v~nl~~---------~~~~~~l~~~f--~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~a~ 261 (284)
...|.|+|. .....+|++.| ..|..++ |+.+.+.. ..+|+|+|+|... ..-..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 355666665 24457899977 8997755 66666542 3688999999663 3334444
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.30 E-value=67 Score=24.27 Aligned_cols=51 Identities=18% Similarity=0.100 Sum_probs=36.5
Q ss_pred CeEEEcCCCC-C--------CCHHHHHHhh--ccCCceEEEEEEeCCCCCCcccEEEEEeCCHHH
Q 023297 100 CELYVCNLPR-S--------FDISELLEMF--KPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153 (284)
Q Consensus 100 ~~l~v~nl~~-~--------~t~~~l~~~f--~~~G~i~~~~~~~~~~~~~~~g~afv~f~~~~~ 153 (284)
-.+.|-|+|. . ....+|++.| ..|.++. ++...++ ..+.|++.|.|.+.-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChH
Confidence 4567778887 2 3457899977 9998875 5555553 3478999999987655
No 406
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=31.79 E-value=70 Score=21.13 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=21.6
Q ss_pred ceEEEEEeecCCCCCcceEEEEEeCC
Q 023297 228 TVVSARVLHDRKGQTTRVFGFISFSS 253 (284)
Q Consensus 228 ~v~~v~i~~~~~~~~~~g~afV~f~~ 253 (284)
+|++|+|.+-...|+-+|||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888777778889999999975
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.78 E-value=1.2e+02 Score=20.01 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=42.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCceEEEEEeecCCCCCcceEEEEEeCCHHHHHHHH
Q 023297 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (284)
Q Consensus 201 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 261 (284)
..|-|-|-|+|..+-..++--...-.|.--.|..+-. .|.+.|.+.++-..|+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidg--------qamirfqnsdeqrlai 63 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG--------QAMIRFQNSDEQRLAI 63 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS--------CEEEEESSHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC--------eeEEEecCChHHHHHH
Confidence 4577899999999998888777777776666655432 3999999999999998
No 408
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=27.10 E-value=91 Score=21.20 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.5
Q ss_pred ceEEEEEeecCCCCCcceEEEEEeCC
Q 023297 228 TVVSARVLHDRKGQTTRVFGFISFSS 253 (284)
Q Consensus 228 ~v~~v~i~~~~~~~~~~g~afV~f~~ 253 (284)
.|++|+|.+-...|+-+|||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888777678889999999975
No 409
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.62 E-value=95 Score=21.32 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=20.6
Q ss_pred ceEEEEEeecCCCCCcceEEEEEeCC
Q 023297 228 TVVSARVLHDRKGQTTRVFGFISFSS 253 (284)
Q Consensus 228 ~v~~v~i~~~~~~~~~~g~afV~f~~ 253 (284)
.|++|+|.+-...|+-+|||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 47788887776678888999998875
No 410
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=23.60 E-value=43 Score=15.88 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=9.5
Q ss_pred HHHHHHhhccCC
Q 023297 113 ISELLEMFKPFG 124 (284)
Q Consensus 113 ~~~l~~~f~~~G 124 (284)
-.+++.+|+++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467888998887
No 411
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.08 E-value=62 Score=26.35 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=25.4
Q ss_pred CeEEEcCCCCCCCHHHHHHhhccCCceEEEEEE
Q 023297 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132 (284)
Q Consensus 100 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~~~ 132 (284)
.-+.|+|||+.++..-|..++.. +.+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 56789999999999999999987 556554443
No 412
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=20.16 E-value=2.1e+02 Score=19.37 Aligned_cols=49 Identities=8% Similarity=0.095 Sum_probs=29.4
Q ss_pred CCCCHHHHHHhhcc-CC---c-eEEEEEEeCCCCCCcccEEEEEeCCHHHHHHHH
Q 023297 109 RSFDISELLEMFKP-FG---T-VLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158 (284)
Q Consensus 109 ~~~t~~~l~~~f~~-~G---~-i~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~ 158 (284)
...+..+|++.+.+ |+ . |.-..+...-..|++.|||.| |.+.+.|.+.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45677888876643 33 2 333334444344677788866 77777766543
Done!