BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023298
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S Bound
Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4 Bound
Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 18 ALVIKCVFSPPPNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLED 77
++++ V + ++T R+ E + + VNLD + Y ++D+RE +++E+
Sbjct: 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAY-VNLDTGVKELPYEPSIDVREFVTVEE 72
Query: 78 VMEELGLGPNGGLIYCMEHLEDNLDDWXXXXXXXXXXXXXXVFDCPGQIELF 129
+M E G GPNG ++ + L + +++ + D PGQ+E F
Sbjct: 73 IMRE-GYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETF 123
>pdb|1IHK|A Chain A, Crystal Structure Of Fibroblast Growth Factor 9 (Fgf9)
Length = 174
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 4 YLDLLCKGYMSWLYALVIKCVFSPPPNQS---TYCSSLYRHCETVRRTMHIVNLD 55
YL + KG + L +CVF ++ TY S+LY+H +T RR +N D
Sbjct: 81 YLGMNEKGELYGSEKLTQECVFREQFEENWYNTYSSNLYKHVDTGRRYYVALNKD 135
>pdb|1G82|A Chain A, Structure Of Fibroblast Growth Factor 9
pdb|1G82|B Chain B, Structure Of Fibroblast Growth Factor 9
pdb|1G82|C Chain C, Structure Of Fibroblast Growth Factor 9
pdb|1G82|D Chain D, Structure Of Fibroblast Growth Factor 9
Length = 160
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 4 YLDLLCKGYMSWLYALVIKCVFSPPPNQS---TYCSSLYRHCETVRRTMHIVNLD 55
YL + KG + L +CVF ++ TY S+LY+H +T RR +N D
Sbjct: 67 YLGMNEKGELYGSEKLTQECVFREQFEENWYNTYSSNLYKHVDTGRRYYVALNKD 121
>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
pdb|2F8M|B Chain B, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
Length = 244
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 234 VDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADL 272
VDEY + S M + L S++ YVL +IDN ++ G+ D+
Sbjct: 21 VDEY-VQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDV 58
>pdb|3F1R|A Chain A, Crystal Structure Of Fgf20 Dimer
pdb|3F1R|B Chain B, Crystal Structure Of Fgf20 Dimer
Length = 211
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 4 YLDLLCKGYMSWLYALVIKCVFSPPPNQS---TYCSSLYRHCETVRRTMHIVNLD 55
YL + KG + L +C+F ++ TY S++Y+H +T RR +N D
Sbjct: 118 YLGMNDKGELYGSEKLTSECIFREQFEENWYNTYSSNIYKHGDTGRRYFVALNKD 172
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 32/52 (61%)
Query: 179 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSL 230
+L++P + ++K+D + N +E+ ++L + + LSE+++ P AK ++
Sbjct: 120 ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNI 171
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 220 APQFAKLNKSLIELVDEYSMVSFMPLDLRK--ESSIRYVLSQI 260
APQ A++N+ + EL E VSF+ L+ E S +Y +S +
Sbjct: 50 APQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSV 92
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 220 APQFAKLNKSLIELVDEYSMVSFMPLDLRK--ESSIRYVLSQI 260
APQ A++N+ + EL E VSF+ L+ E S +Y +S +
Sbjct: 44 APQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSV 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,050,246
Number of Sequences: 62578
Number of extensions: 296162
Number of successful extensions: 630
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 9
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)