Query 023298
Match_columns 284
No_of_seqs 205 out of 1550
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1534 Putative transcription 100.0 1.6E-59 3.5E-64 405.3 19.3 262 19-283 3-269 (273)
2 KOG1533 Predicted GTPase [Gene 100.0 6.1E-55 1.3E-59 382.1 20.4 246 19-266 2-254 (290)
3 PF03029 ATP_bind_1: Conserved 100.0 3E-54 6.4E-59 387.4 16.4 235 24-266 1-238 (238)
4 KOG1532 GTPase XAB1, interacts 100.0 3.6E-46 7.9E-51 333.4 20.4 247 17-267 17-266 (366)
5 PRK13768 GTPase; Provisional 100.0 2E-38 4.3E-43 287.3 25.4 246 19-270 2-252 (253)
6 COG1159 Era GTPase [General fu 99.9 8E-22 1.7E-26 179.5 17.2 172 21-275 8-182 (298)
7 TIGR00436 era GTP-binding prot 99.8 8E-18 1.7E-22 153.6 17.0 171 21-275 2-174 (270)
8 PRK00089 era GTPase Era; Revie 99.7 8.3E-17 1.8E-21 148.0 17.3 172 21-275 7-181 (292)
9 COG1160 Predicted GTPases [Gen 99.7 6.2E-16 1.3E-20 148.0 15.4 162 21-270 5-169 (444)
10 PRK12298 obgE GTPase CgtA; Rev 99.6 6.2E-15 1.3E-19 141.4 17.4 128 116-273 208-341 (390)
11 PRK15494 era GTPase Era; Provi 99.6 7.2E-15 1.6E-19 138.6 16.9 125 114-275 99-226 (339)
12 PRK09435 membrane ATPase/prote 99.6 1.4E-14 3E-19 136.1 16.3 196 15-265 52-260 (332)
13 PF00009 GTP_EFTU: Elongation 99.6 1.9E-14 4.2E-19 124.1 12.2 114 114-265 69-187 (188)
14 cd04163 Era Era subfamily. Er 99.6 8.4E-14 1.8E-18 114.3 15.4 162 20-264 4-168 (168)
15 TIGR00750 lao LAO/AO transport 99.6 1.6E-13 3.4E-18 127.4 17.6 203 13-265 28-238 (300)
16 KOG1423 Ras-like GTPase ERA [C 99.6 7.8E-14 1.7E-18 127.6 14.0 187 21-275 74-281 (379)
17 COG0536 Obg Predicted GTPase [ 99.5 9.9E-14 2.1E-18 128.6 14.5 167 24-268 164-336 (369)
18 cd02117 NifH_like This family 99.5 8E-14 1.7E-18 122.7 13.0 41 21-61 2-43 (212)
19 PRK12299 obgE GTPase CgtA; Rev 99.5 1.8E-13 3.9E-18 129.0 15.7 124 114-268 205-331 (335)
20 TIGR02729 Obg_CgtA Obg family 99.5 2.4E-13 5.3E-18 127.8 16.6 119 115-264 205-328 (329)
21 cd02032 Bchl_like This family 99.5 1.4E-13 3.1E-18 125.0 14.1 40 22-61 3-43 (267)
22 cd01898 Obg Obg subfamily. Th 99.5 7E-13 1.5E-17 110.8 16.9 119 116-264 49-170 (170)
23 TIGR01281 DPOR_bchL light-inde 99.5 1E-13 2.2E-18 125.9 12.7 40 22-61 3-43 (268)
24 CHL00072 chlL photochlorophyll 99.5 1.3E-13 2.8E-18 127.4 12.2 41 22-62 3-44 (290)
25 cd01884 EF_Tu EF-Tu subfamily. 99.5 8.2E-13 1.8E-17 115.4 16.6 113 114-264 64-192 (195)
26 PRK12297 obgE GTPase CgtA; Rev 99.5 4.3E-13 9.3E-18 129.8 15.5 166 21-269 160-331 (424)
27 cd02040 NifH NifH gene encodes 99.5 2.6E-13 5.6E-18 122.9 12.5 42 20-61 2-44 (270)
28 PRK13185 chlL protochlorophyll 99.5 2.8E-13 6.1E-18 123.2 12.8 43 20-62 3-46 (270)
29 PF02421 FeoB_N: Ferrous iron 99.5 2.7E-13 5.9E-18 114.5 11.7 152 22-260 3-156 (156)
30 PRK12296 obgE GTPase CgtA; Rev 99.5 5.9E-13 1.3E-17 130.8 14.9 123 114-267 205-342 (500)
31 cd04165 GTPBP1_like GTPBP1-lik 99.5 9.1E-13 2E-17 117.5 14.2 210 22-262 2-220 (224)
32 PRK13869 plasmid-partitioning 99.5 9.6E-13 2.1E-17 127.0 14.3 109 19-127 121-264 (405)
33 PHA02519 plasmid partition pro 99.5 1.2E-12 2.6E-17 125.6 14.4 109 19-127 106-247 (387)
34 COG1192 Soj ATPases involved i 99.4 1.1E-12 2.4E-17 118.4 13.3 109 19-127 2-132 (259)
35 TIGR03594 GTPase_EngA ribosome 99.4 2.8E-12 6E-17 123.9 16.4 115 114-267 46-162 (429)
36 TIGR01969 minD_arch cell divis 99.4 1.6E-12 3.4E-17 116.1 13.7 153 22-193 4-172 (251)
37 PF10662 PduV-EutP: Ethanolami 99.4 1E-12 2.3E-17 109.1 11.5 101 118-262 39-143 (143)
38 cd01889 SelB_euk SelB subfamil 99.4 3.3E-12 7.1E-17 110.3 14.9 118 114-265 67-186 (192)
39 PRK13232 nifH nitrogenase redu 99.4 2.1E-12 4.5E-17 117.9 14.1 43 21-63 3-46 (273)
40 cd00881 GTP_translation_factor 99.4 3.9E-12 8.5E-17 107.6 14.7 128 114-266 61-188 (189)
41 PRK09866 hypothetical protein; 99.4 7.4E-12 1.6E-16 125.0 18.7 118 114-263 229-351 (741)
42 CHL00175 minD septum-site dete 99.4 4.6E-12 1E-16 115.9 15.9 40 20-59 16-57 (281)
43 PRK13230 nitrogenase reductase 99.4 3.3E-13 7.1E-18 123.6 8.3 44 20-63 2-46 (279)
44 cd01894 EngA1 EngA1 subfamily. 99.4 4.9E-12 1.1E-16 103.7 14.4 111 114-263 44-156 (157)
45 PRK13705 plasmid-partitioning 99.4 5E-12 1.1E-16 121.4 16.5 109 19-127 106-247 (388)
46 PHA02518 ParA-like protein; Pr 99.4 3E-12 6.4E-17 111.4 13.4 42 22-63 3-46 (211)
47 PRK13849 putative crown gall t 99.4 2.3E-12 5E-17 115.5 12.9 43 21-63 3-47 (231)
48 TIGR03371 cellulose_yhjQ cellu 99.4 2.7E-12 5.8E-17 114.6 13.0 158 21-194 3-181 (246)
49 PRK10037 cell division protein 99.4 3.4E-12 7.3E-17 115.2 13.4 40 21-60 3-44 (250)
50 PRK03003 GTP-binding protein D 99.4 2.2E-12 4.7E-17 126.8 13.1 115 114-267 85-201 (472)
51 PRK13233 nifH nitrogenase redu 99.4 1.9E-12 4.1E-17 118.1 11.7 43 20-62 3-47 (275)
52 cd01895 EngA2 EngA2 subfamily. 99.4 1.1E-11 2.3E-16 102.9 15.1 122 114-263 49-173 (174)
53 TIGR01425 SRP54_euk signal rec 99.4 4.8E-12 1E-16 122.4 14.8 153 18-196 99-254 (429)
54 cd01881 Obg_like The Obg-like 99.4 7.5E-12 1.6E-16 104.8 14.2 120 114-263 43-175 (176)
55 cd01864 Rab19 Rab19 subfamily. 99.4 1.2E-11 2.6E-16 103.4 15.2 112 115-264 52-165 (165)
56 TIGR00064 ftsY signal recognit 99.4 6.6E-12 1.4E-16 115.2 14.5 44 15-58 68-112 (272)
57 PRK13235 nifH nitrogenase redu 99.4 5.5E-13 1.2E-17 121.8 6.7 43 21-63 3-46 (274)
58 TIGR03453 partition_RepA plasm 99.4 1.1E-11 2.4E-16 118.8 15.8 42 20-61 105-148 (387)
59 PF06564 YhjQ: YhjQ protein; 99.4 1.6E-11 3.4E-16 110.6 15.7 155 19-195 1-177 (243)
60 cd02037 MRP-like MRP (Multiple 99.4 1.2E-11 2.6E-16 105.0 14.2 129 23-194 4-134 (169)
61 PRK00093 GTP-binding protein D 99.4 1.2E-11 2.6E-16 119.8 16.1 114 114-266 48-163 (435)
62 cd01878 HflX HflX subfamily. 99.4 1.5E-11 3.2E-16 106.9 15.0 116 115-264 89-204 (204)
63 cd01888 eIF2_gamma eIF2-gamma 99.4 1.3E-11 2.9E-16 107.9 14.4 116 115-268 83-202 (203)
64 cd04160 Arfrp1 Arfrp1 subfamil 99.4 1.3E-11 2.7E-16 103.1 13.5 112 114-262 49-166 (167)
65 cd01897 NOG NOG1 is a nucleola 99.4 3E-11 6.6E-16 100.8 15.6 119 114-264 46-167 (168)
66 cd00157 Rho Rho (Ras homology) 99.4 5.5E-12 1.2E-16 105.3 11.1 123 115-262 48-170 (171)
67 cd01879 FeoB Ferrous iron tran 99.4 9.2E-12 2E-16 102.5 11.8 114 115-264 43-156 (158)
68 PRK10416 signal recognition pa 99.4 2E-11 4.4E-16 114.3 15.6 43 17-59 112-155 (318)
69 cd04171 SelB SelB subfamily. 99.4 3.1E-11 6.8E-16 99.7 14.9 110 115-262 51-163 (164)
70 cd00880 Era_like Era (E. coli 99.4 2.7E-11 5.9E-16 97.8 14.2 118 114-263 44-162 (163)
71 cd04112 Rab26 Rab26 subfamily. 99.3 1.8E-11 3.9E-16 105.6 13.6 124 115-275 50-173 (191)
72 TIGR01968 minD_bact septum sit 99.3 3.6E-11 7.7E-16 107.8 15.8 39 21-59 3-43 (261)
73 TIGR03156 GTP_HflX GTP-binding 99.3 2.4E-11 5.2E-16 115.3 15.4 115 114-263 236-350 (351)
74 TIGR03594 GTPase_EngA ribosome 99.3 4.3E-11 9.3E-16 115.6 17.3 124 114-265 219-344 (429)
75 TIGR01287 nifH nitrogenase iro 99.3 3.1E-12 6.8E-17 116.7 8.8 41 21-61 2-43 (275)
76 cd02036 MinD Bacterial cell di 99.3 1.5E-11 3.3E-16 104.0 12.3 39 23-61 4-43 (179)
77 KOG2749 mRNA cleavage and poly 99.3 8.3E-12 1.8E-16 116.2 11.4 164 14-195 99-277 (415)
78 TIGR01007 eps_fam capsular exo 99.3 3.9E-11 8.5E-16 104.7 15.0 163 14-194 12-193 (204)
79 PRK11058 GTPase HflX; Provisio 99.3 4.1E-11 8.9E-16 116.4 16.5 117 116-265 246-362 (426)
80 PRK00093 GTP-binding protein D 99.3 2.5E-11 5.4E-16 117.6 15.0 121 114-264 220-343 (435)
81 PRK00454 engB GTP-binding prot 99.3 9.6E-11 2.1E-15 100.5 16.9 122 115-267 70-196 (196)
82 cd04158 ARD1 ARD1 subfamily. 99.3 3.2E-11 6.9E-16 101.8 13.6 121 114-272 42-168 (169)
83 PRK10818 cell division inhibit 99.3 2.3E-11 5E-16 110.5 13.2 39 22-60 5-45 (270)
84 COG1160 Predicted GTPases [Gen 99.3 1.2E-11 2.6E-16 118.8 11.4 123 114-265 225-351 (444)
85 cd04164 trmE TrmE (MnmE, ThdF, 99.3 7.7E-11 1.7E-15 96.4 14.8 109 114-264 48-156 (157)
86 PRK03003 GTP-binding protein D 99.3 1.3E-10 2.9E-15 114.2 17.8 123 114-265 258-382 (472)
87 PRK09518 bifunctional cytidyla 99.3 8.4E-11 1.8E-15 120.9 16.9 123 114-266 497-622 (712)
88 cd01860 Rab5_related Rab5-rela 99.3 1.4E-10 2.9E-15 96.3 15.1 111 115-265 50-163 (163)
89 cd01899 Ygr210 Ygr210 subfamil 99.3 1E-10 2.2E-15 109.5 15.4 68 179-276 212-280 (318)
90 PRK12736 elongation factor Tu; 99.3 1.5E-10 3.1E-15 111.5 16.6 115 114-266 74-202 (394)
91 cd04145 M_R_Ras_like M-Ras/R-R 99.3 1.1E-10 2.4E-15 96.7 13.8 112 115-264 50-163 (164)
92 smart00173 RAS Ras subfamily o 99.3 6.8E-11 1.5E-15 98.3 12.5 113 115-265 48-162 (164)
93 cd04151 Arl1 Arl1 subfamily. 99.3 9.8E-11 2.1E-15 97.3 13.1 114 114-262 42-157 (158)
94 PRK15467 ethanolamine utilizat 99.3 8.7E-11 1.9E-15 98.9 12.8 110 119-269 41-151 (158)
95 PRK09518 bifunctional cytidyla 99.3 7.2E-11 1.6E-15 121.5 14.8 115 114-267 322-438 (712)
96 PRK13231 nitrogenase reductase 99.3 3.2E-11 6.8E-16 109.4 10.8 42 19-61 2-44 (264)
97 cd03114 ArgK-like The function 99.3 7.5E-11 1.6E-15 98.7 12.2 39 22-60 2-41 (148)
98 cd01886 EF-G Elongation factor 99.3 4.1E-10 8.9E-15 103.2 18.2 138 114-266 63-269 (270)
99 cd04136 Rap_like Rap-like subf 99.3 6.7E-11 1.4E-15 98.0 11.8 111 116-264 50-162 (163)
100 CHL00071 tufA elongation facto 99.3 1.8E-10 3.8E-15 111.4 16.4 114 114-265 74-211 (409)
101 cd04155 Arl3 Arl3 subfamily. 99.3 1.3E-10 2.7E-15 97.7 13.5 116 114-262 57-172 (173)
102 PRK00049 elongation factor Tu; 99.3 1.8E-10 3.8E-15 111.0 16.3 114 114-265 74-203 (396)
103 cd04101 RabL4 RabL4 (Rab-like4 99.3 5.3E-11 1.2E-15 98.9 11.1 112 115-264 52-163 (164)
104 smart00174 RHO Rho (Ras homolo 99.3 9.1E-11 2E-15 98.6 12.5 126 115-264 46-171 (174)
105 cd04119 RJL RJL (RabJ-Like) su 99.3 9.7E-11 2.1E-15 97.0 12.5 112 115-264 49-166 (168)
106 cd04113 Rab4 Rab4 subfamily. 99.3 8.7E-11 1.9E-15 97.5 12.2 111 115-263 49-160 (161)
107 cd04166 CysN_ATPS CysN_ATPS su 99.3 2.7E-10 5.9E-15 100.0 15.9 104 114-255 76-184 (208)
108 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.3 1.6E-10 3.4E-15 96.6 13.7 111 115-264 51-163 (166)
109 cd01890 LepA LepA subfamily. 99.3 9.9E-11 2.1E-15 98.9 12.6 112 114-265 66-177 (179)
110 PLN03127 Elongation factor Tu; 99.3 3.2E-10 6.9E-15 110.8 17.9 115 114-266 123-253 (447)
111 cd04142 RRP22 RRP22 subfamily. 99.2 2.1E-10 4.5E-15 100.2 14.9 124 115-269 49-179 (198)
112 PRK12735 elongation factor Tu; 99.2 2.3E-10 5E-15 110.1 16.5 116 114-266 74-204 (396)
113 cd01861 Rab6 Rab6 subfamily. 99.2 7.4E-11 1.6E-15 97.6 11.4 112 115-264 49-161 (161)
114 cd01868 Rab11_like Rab11-like. 99.2 1.7E-10 3.7E-15 96.1 13.6 109 116-264 53-164 (165)
115 cd01862 Rab7 Rab7 subfamily. 99.2 8.9E-11 1.9E-15 98.1 11.5 113 116-266 50-168 (172)
116 cd01867 Rab8_Rab10_Rab13_like 99.2 2.5E-10 5.5E-15 95.8 14.3 110 115-264 52-164 (167)
117 KOG1489 Predicted GTP-binding 99.2 1.5E-10 3.2E-15 106.7 13.8 159 24-263 201-365 (366)
118 PF01656 CbiA: CobQ/CobB/MinD/ 99.2 1.2E-10 2.7E-15 99.6 12.5 150 23-194 3-161 (195)
119 cd04170 EF-G_bact Elongation f 99.2 4.2E-10 9.2E-15 102.5 16.6 138 114-266 63-267 (268)
120 cd03110 Fer4_NifH_child This p 99.2 2.4E-10 5.1E-15 97.6 13.8 35 23-61 4-39 (179)
121 cd01876 YihA_EngB The YihA (En 99.2 5.6E-10 1.2E-14 91.8 15.6 119 116-264 46-170 (170)
122 PRK13234 nifH nitrogenase redu 99.2 1.9E-11 4.1E-16 113.3 7.4 45 18-62 3-48 (295)
123 cd01883 EF1_alpha Eukaryotic e 99.2 8.1E-11 1.8E-15 104.2 11.1 105 114-254 76-194 (219)
124 PTZ00133 ADP-ribosylation fact 99.2 3.3E-10 7.3E-15 97.3 14.5 116 114-264 60-177 (182)
125 TIGR02528 EutP ethanolamine ut 99.2 1.6E-10 3.4E-15 94.3 11.7 104 118-261 38-141 (142)
126 TIGR02016 BchX chlorophyllide 99.2 1.8E-10 3.9E-15 106.8 13.5 42 21-62 2-44 (296)
127 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.2 4.6E-10 1E-14 96.2 14.8 115 115-264 52-169 (183)
128 smart00175 RAB Rab subfamily o 99.2 2.5E-10 5.4E-15 94.5 12.7 113 115-265 49-162 (164)
129 TIGR03598 GTPase_YsxC ribosome 99.2 2.4E-10 5.1E-15 97.6 12.8 109 116-254 65-179 (179)
130 cd04138 H_N_K_Ras_like H-Ras/N 99.2 3.8E-10 8.2E-15 92.9 13.6 110 116-264 50-161 (162)
131 cd04157 Arl6 Arl6 subfamily. 99.2 3.5E-10 7.7E-15 93.5 13.4 114 114-262 44-161 (162)
132 cd01887 IF2_eIF5B IF2/eIF5B (i 99.2 5.4E-10 1.2E-14 92.9 14.4 116 114-265 49-166 (168)
133 PRK04213 GTP-binding protein; 99.2 3.3E-10 7.1E-15 98.0 13.5 123 116-266 53-193 (201)
134 cd04114 Rab30 Rab30 subfamily. 99.2 4.7E-10 1E-14 93.7 14.0 110 116-263 57-167 (169)
135 cd01865 Rab3 Rab3 subfamily. 99.2 3.5E-10 7.7E-15 94.7 13.3 112 115-265 50-163 (165)
136 cd04139 RalA_RalB RalA/RalB su 99.2 3.4E-10 7.4E-15 93.5 12.7 109 115-264 48-161 (164)
137 cd04168 TetM_like Tet(M)-like 99.2 1.1E-09 2.4E-14 98.5 16.9 138 114-266 63-236 (237)
138 PRK11670 antiporter inner memb 99.2 3.7E-10 8E-15 107.9 14.5 38 25-62 114-152 (369)
139 TIGR00231 small_GTP small GTP- 99.2 4E-10 8.6E-15 90.9 12.7 110 115-261 50-160 (161)
140 smart00177 ARF ARF-like small 99.2 7E-10 1.5E-14 94.4 14.5 116 114-264 56-173 (175)
141 PRK00771 signal recognition pa 99.2 5.4E-10 1.2E-14 108.7 15.5 43 17-59 93-136 (437)
142 cd00878 Arf_Arl Arf (ADP-ribos 99.2 5.7E-10 1.2E-14 92.3 13.5 114 114-262 42-157 (158)
143 cd00154 Rab Rab family. Rab G 99.2 1.8E-10 3.8E-15 93.8 10.3 109 115-261 49-158 (159)
144 PRK14974 cell division protein 99.2 9.7E-10 2.1E-14 103.6 16.7 42 17-58 138-180 (336)
145 PRK09602 translation-associate 99.2 8.5E-10 1.8E-14 106.3 16.6 38 238-275 243-281 (396)
146 cd04175 Rap1 Rap1 subgroup. T 99.2 3.4E-10 7.4E-15 94.3 12.2 111 116-264 50-162 (164)
147 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 4.3E-10 9.2E-15 97.6 13.2 133 114-270 48-190 (196)
148 cd04125 RabA_like RabA-like su 99.2 6.3E-10 1.4E-14 95.4 14.0 121 116-275 50-172 (188)
149 cd04122 Rab14 Rab14 subfamily. 99.2 4.2E-10 9E-15 94.3 12.5 110 115-264 51-163 (166)
150 cd04154 Arl2 Arl2 subfamily. 99.2 8.5E-10 1.8E-14 93.2 14.6 112 114-261 57-171 (173)
151 cd01891 TypA_BipA TypA (tyrosi 99.2 1.2E-09 2.7E-14 94.3 15.8 118 114-266 64-193 (194)
152 cd00876 Ras Ras family. The R 99.2 5.8E-10 1.3E-14 91.6 13.2 111 115-263 47-159 (160)
153 COG1084 Predicted GTPase [Gene 99.2 5.7E-10 1.2E-14 103.3 14.2 164 19-267 168-338 (346)
154 cd04107 Rab32_Rab38 Rab38/Rab3 99.2 5.3E-10 1.2E-14 97.1 13.3 114 115-267 50-170 (201)
155 cd04156 ARLTS1 ARLTS1 subfamil 99.2 4.1E-10 8.9E-15 93.2 12.0 114 115-262 44-159 (160)
156 COG3640 CooC CO dehydrogenase 99.2 5.3E-10 1.1E-14 99.4 13.3 150 21-194 2-198 (255)
157 PRK10512 selenocysteinyl-tRNA- 99.2 5.6E-10 1.2E-14 113.0 15.4 114 115-267 51-168 (614)
158 smart00178 SAR Sar1p-like memb 99.2 5.9E-10 1.3E-14 95.7 13.3 118 114-263 60-183 (184)
159 cd01866 Rab2 Rab2 subfamily. 99.2 7.5E-10 1.6E-14 93.1 13.1 110 116-264 54-165 (168)
160 PRK09554 feoB ferrous iron tra 99.2 7.2E-10 1.6E-14 114.7 15.5 117 114-265 49-168 (772)
161 TIGR03018 pepcterm_TyrKin exop 99.2 2E-09 4.4E-14 94.5 16.3 43 18-60 34-79 (207)
162 cd03115 SRP The signal recogni 99.1 1.4E-09 3.1E-14 92.3 14.6 39 21-59 2-41 (173)
163 cd04127 Rab27A Rab27a subfamil 99.1 5.7E-10 1.2E-14 94.4 12.0 111 115-264 63-176 (180)
164 cd04109 Rab28 Rab28 subfamily. 99.1 7.7E-10 1.7E-14 97.4 13.0 112 115-266 50-167 (215)
165 PRK13236 nitrogenase reductase 99.1 1.3E-10 2.9E-15 107.6 8.5 45 18-62 5-50 (296)
166 TIGR02034 CysN sulfate adenyly 99.1 7E-10 1.5E-14 107.2 13.7 113 114-263 79-207 (406)
167 cd04116 Rab9 Rab9 subfamily. 99.1 4.5E-10 9.8E-15 94.1 10.8 110 116-263 55-169 (170)
168 TIGR03815 CpaE_hom_Actino heli 99.1 1.4E-09 2.9E-14 101.8 15.1 43 19-61 93-137 (322)
169 cd04123 Rab21 Rab21 subfamily. 99.1 1.3E-09 2.9E-14 89.6 13.4 111 116-264 50-161 (162)
170 cd04149 Arf6 Arf6 subfamily. 99.1 8.6E-10 1.9E-14 93.3 12.5 112 114-262 52-167 (168)
171 cd02035 ArsA ArsA ATPase funct 99.1 1.1E-09 2.5E-14 96.8 13.7 38 22-59 2-40 (217)
172 cd04130 Wrch_1 Wrch-1 subfamil 99.1 5.9E-10 1.3E-14 94.2 11.5 120 115-261 48-170 (173)
173 PF00448 SRP54: SRP54-type pro 99.1 6.7E-10 1.5E-14 97.2 12.1 152 19-196 1-155 (196)
174 COG0486 ThdF Predicted GTPase 99.1 4.8E-10 1E-14 108.1 12.1 158 18-267 217-378 (454)
175 PRK10867 signal recognition pa 99.1 7.3E-10 1.6E-14 107.7 13.3 43 17-59 98-142 (433)
176 cd04159 Arl10_like Arl10-like 99.1 1.5E-09 3.1E-14 88.5 13.2 113 115-262 44-158 (159)
177 cd04137 RheB Rheb (Ras Homolog 99.1 8.3E-10 1.8E-14 93.5 12.1 114 115-266 49-164 (180)
178 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.1 8.7E-10 1.9E-14 93.6 12.2 112 114-261 58-172 (174)
179 cd00877 Ran Ran (Ras-related n 99.1 6.5E-10 1.4E-14 93.7 11.3 114 115-271 49-165 (166)
180 cd01893 Miro1 Miro1 subfamily. 99.1 2.3E-09 4.9E-14 90.0 14.5 114 114-264 46-163 (166)
181 cd01870 RhoA_like RhoA-like su 99.1 7E-10 1.5E-14 93.3 11.4 124 115-263 49-173 (175)
182 PRK05291 trmE tRNA modificatio 99.1 9.7E-10 2.1E-14 107.5 14.0 108 114-266 262-371 (449)
183 cd04144 Ras2 Ras2 subfamily. 99.1 9.8E-10 2.1E-14 94.6 12.5 112 116-265 48-163 (190)
184 PLN03118 Rab family protein; P 99.1 1.7E-09 3.6E-14 94.8 14.1 116 115-268 62-180 (211)
185 TIGR00485 EF-Tu translation el 99.1 1.6E-09 3.6E-14 104.1 15.3 115 114-265 74-201 (394)
186 PRK09841 cryptic autophosphory 99.1 7.3E-10 1.6E-14 114.3 13.5 158 18-193 530-705 (726)
187 cd04150 Arf1_5_like Arf1-Arf5- 99.1 1.5E-09 3.3E-14 90.8 13.1 114 114-262 43-158 (159)
188 cd04135 Tc10 TC10 subfamily. 99.1 6.7E-10 1.5E-14 93.3 11.0 123 116-263 49-172 (174)
189 PRK05124 cysN sulfate adenylyl 99.1 1.4E-09 3E-14 107.1 14.8 105 114-256 106-216 (474)
190 cd04120 Rab12 Rab12 subfamily. 99.1 1.1E-09 2.4E-14 96.1 12.7 113 115-266 49-164 (202)
191 PRK11519 tyrosine kinase; Prov 99.1 7.2E-10 1.6E-14 114.2 13.2 158 18-193 525-700 (719)
192 cd04132 Rho4_like Rho4-like su 99.1 2.1E-09 4.6E-14 91.7 14.0 120 116-267 50-169 (187)
193 cd04147 Ras_dva Ras-dva subfam 99.1 1.7E-09 3.7E-14 93.9 13.5 116 115-269 47-167 (198)
194 cd00882 Ras_like_GTPase Ras-li 99.1 3.1E-10 6.6E-15 90.2 7.9 113 114-261 44-156 (157)
195 TIGR00475 selB selenocysteine- 99.1 1.7E-09 3.7E-14 108.9 15.1 116 115-268 50-169 (581)
196 cd04106 Rab23_lke Rab23-like s 99.1 1.3E-09 2.7E-14 90.3 11.8 107 115-262 51-160 (162)
197 PLN00223 ADP-ribosylation fact 99.1 1.9E-09 4.1E-14 92.6 13.2 111 114-264 60-177 (181)
198 TIGR00437 feoB ferrous iron tr 99.1 4.1E-10 8.9E-15 113.6 10.4 119 114-268 40-158 (591)
199 cd01863 Rab18 Rab18 subfamily. 99.1 1.6E-09 3.5E-14 89.7 12.4 111 115-263 49-160 (161)
200 PRK12317 elongation factor 1-a 99.1 1.4E-09 3.1E-14 105.4 13.5 112 114-263 83-215 (425)
201 cd04140 ARHI_like ARHI subfami 99.1 2.3E-09 4.9E-14 89.8 13.0 111 115-263 49-163 (165)
202 PRK05506 bifunctional sulfate 99.1 2.2E-09 4.7E-14 109.2 15.3 113 114-264 103-232 (632)
203 cd02038 FleN-like FleN is a me 99.1 2.2E-09 4.8E-14 88.6 12.6 38 23-60 4-42 (139)
204 cd00879 Sar1 Sar1 subfamily. 99.1 3E-09 6.6E-14 90.9 13.9 122 115-263 63-189 (190)
205 PTZ00141 elongation factor 1- 99.1 1.6E-09 3.4E-14 106.0 13.6 114 114-264 84-224 (446)
206 cd04124 RabL2 RabL2 subfamily. 99.1 1.7E-09 3.6E-14 90.5 11.6 106 115-264 49-157 (161)
207 PLN03110 Rab GTPase; Provision 99.1 2.5E-09 5.3E-14 94.5 13.0 113 116-265 62-174 (216)
208 cd01871 Rac1_like Rac1-like su 99.1 1.6E-09 3.5E-14 92.3 11.4 125 115-263 49-173 (174)
209 PRK11889 flhF flagellar biosyn 99.1 2.1E-09 4.6E-14 102.8 13.4 152 16-197 238-393 (436)
210 COG2262 HflX GTPases [General 99.1 2.6E-09 5.6E-14 101.6 13.7 120 114-267 239-358 (411)
211 cd04169 RF3 RF3 subfamily. Pe 99.1 6.4E-09 1.4E-13 95.2 15.9 138 114-266 70-266 (267)
212 TIGR00073 hypB hydrogenase acc 99.1 7.1E-09 1.5E-13 91.0 15.6 179 18-263 21-205 (207)
213 cd04110 Rab35 Rab35 subfamily. 99.1 6E-09 1.3E-13 90.5 15.0 109 116-265 56-167 (199)
214 TIGR00959 ffh signal recogniti 99.1 2.6E-09 5.6E-14 103.7 14.0 42 18-59 98-141 (428)
215 cd03111 CpaE_like This protein 99.1 2.1E-09 4.6E-14 84.8 11.1 38 22-59 2-42 (106)
216 TIGR01005 eps_transp_fam exopo 99.1 1.4E-09 3.1E-14 112.5 12.9 159 17-193 544-720 (754)
217 cd04177 RSR1 RSR1 subgroup. R 99.1 2.5E-09 5.3E-14 89.8 12.1 111 115-264 49-163 (168)
218 cd04148 RGK RGK subfamily. Th 99.1 3.9E-09 8.4E-14 93.6 13.9 112 114-265 49-163 (221)
219 COG1341 Predicted GTPase or GT 99.0 1E-09 2.3E-14 104.2 10.6 108 15-129 69-186 (398)
220 TIGR03680 eif2g_arch translati 99.0 5.4E-09 1.2E-13 101.0 15.8 114 115-266 80-197 (406)
221 cd00550 ArsA_ATPase Oxyanion-t 99.0 2.4E-08 5.3E-13 90.6 19.2 39 21-59 2-41 (254)
222 cd04176 Rap2 Rap2 subgroup. T 99.0 4.2E-09 9E-14 87.5 13.1 109 116-264 50-162 (163)
223 PF07015 VirC1: VirC1 protein; 99.0 2.7E-09 5.8E-14 95.2 12.5 147 19-194 2-153 (231)
224 cd04146 RERG_RasL11_like RERG/ 99.0 3.1E-09 6.7E-14 88.7 12.3 113 116-264 48-163 (165)
225 PTZ00369 Ras-like protein; Pro 99.0 5.7E-09 1.2E-13 89.8 14.3 112 116-265 54-167 (189)
226 TIGR03029 EpsG chain length de 99.0 3.8E-09 8.2E-14 96.3 13.8 43 18-60 102-146 (274)
227 PLN03126 Elongation factor Tu; 99.0 9.5E-09 2.1E-13 101.2 17.5 113 114-264 143-279 (478)
228 PRK04000 translation initiatio 99.0 5E-09 1.1E-13 101.5 15.3 113 115-266 85-202 (411)
229 cd01896 DRG The developmentall 99.0 7.1E-09 1.5E-13 92.9 15.2 25 241-265 202-226 (233)
230 cd04117 Rab15 Rab15 subfamily. 99.0 3.8E-09 8.1E-14 88.4 12.5 112 115-263 49-160 (161)
231 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.0 5.6E-09 1.2E-13 88.7 13.5 112 115-264 50-163 (172)
232 PRK12739 elongation factor G; 99.0 8.2E-09 1.8E-13 106.0 17.2 67 114-195 72-139 (691)
233 PRK05703 flhF flagellar biosyn 99.0 3.5E-09 7.5E-14 102.9 13.7 151 17-196 219-372 (424)
234 PF03308 ArgK: ArgK protein; 99.0 4.7E-09 1E-13 94.9 13.1 190 19-265 29-230 (266)
235 KOG0461 Selenocysteine-specifi 99.0 3E-09 6.5E-14 99.2 11.9 174 22-264 10-192 (522)
236 cd04118 Rab24 Rab24 subfamily. 99.0 4.7E-09 1E-13 90.1 12.4 115 116-264 51-165 (193)
237 cd04111 Rab39 Rab39 subfamily. 99.0 3.5E-09 7.7E-14 93.2 11.8 110 116-265 53-166 (211)
238 PRK12724 flagellar biosynthesi 99.0 5E-09 1.1E-13 101.1 13.5 150 17-196 221-374 (432)
239 TIGR00491 aIF-2 translation in 99.0 8.8E-09 1.9E-13 103.7 15.6 134 115-264 69-215 (590)
240 TIGR00483 EF-1_alpha translati 99.0 6.1E-09 1.3E-13 101.1 14.0 114 114-264 84-218 (426)
241 cd04134 Rho3 Rho3 subfamily. 99.0 2.9E-09 6.4E-14 91.7 10.5 123 115-265 48-174 (189)
242 PRK12726 flagellar biosynthesi 99.0 4.3E-09 9.3E-14 100.3 12.5 44 16-59 203-247 (407)
243 COG0370 FeoB Fe2+ transport sy 99.0 4.8E-09 1E-13 105.1 13.3 118 114-267 49-166 (653)
244 COG0455 flhG Antiactivator of 99.0 4.3E-08 9.4E-13 89.5 18.4 153 22-193 6-178 (262)
245 cd04115 Rab33B_Rab33A Rab33B/R 99.0 4.3E-09 9.3E-14 88.6 11.0 114 115-264 51-168 (170)
246 cd01874 Cdc42 Cdc42 subfamily. 99.0 3E-09 6.4E-14 90.7 10.0 121 115-263 49-173 (175)
247 PF01926 MMR_HSR1: 50S ribosom 99.0 2.9E-09 6.2E-14 84.4 9.2 71 114-190 46-116 (116)
248 cd01882 BMS1 Bms1. Bms1 is an 99.0 2.6E-08 5.6E-13 88.8 16.4 114 114-268 82-204 (225)
249 PLN00043 elongation factor 1-a 99.0 7E-09 1.5E-13 101.5 13.6 116 114-263 84-223 (447)
250 PRK05433 GTP-binding protein L 99.0 1.3E-08 2.8E-13 102.9 16.0 113 114-266 73-185 (600)
251 cd04128 Spg1 Spg1p. Spg1p (se 99.0 7.8E-09 1.7E-13 88.9 12.3 117 115-266 49-167 (182)
252 TIGR00484 EF-G translation elo 99.0 2.7E-08 5.8E-13 102.3 18.1 67 114-195 74-141 (689)
253 PRK10218 GTP-binding protein; 99.0 3.5E-08 7.6E-13 99.8 18.6 120 114-267 67-197 (607)
254 TIGR01393 lepA GTP-binding pro 99.0 6.4E-09 1.4E-13 105.0 13.3 112 115-266 70-181 (595)
255 PRK12727 flagellar biosynthesi 99.0 1.1E-08 2.3E-13 101.2 14.3 151 14-195 345-498 (559)
256 cd04167 Snu114p Snu114p subfam 99.0 2.4E-08 5.2E-13 87.8 15.1 135 21-195 2-137 (213)
257 cd01892 Miro2 Miro2 subfamily. 99.0 1.1E-08 2.4E-13 86.5 12.5 108 116-265 55-166 (169)
258 PLN03108 Rab family protein; P 99.0 1.5E-08 3.3E-13 89.0 13.5 111 116-264 56-167 (210)
259 COG0218 Predicted GTPase [Gene 98.9 3.4E-08 7.3E-13 86.1 15.2 122 114-266 69-198 (200)
260 cd04161 Arl2l1_Arl13_like Arl2 98.9 7.7E-09 1.7E-13 87.2 11.0 115 114-261 42-165 (167)
261 cd04143 Rhes_like Rhes_like su 98.9 3.2E-08 6.9E-13 89.5 15.7 112 115-265 48-171 (247)
262 PRK12723 flagellar biosynthesi 98.9 1.2E-08 2.6E-13 97.9 13.5 152 17-197 172-328 (388)
263 TIGR01394 TypA_BipA GTP-bindin 98.9 1.7E-08 3.7E-13 101.9 14.5 120 114-267 63-193 (594)
264 TIGR00487 IF-2 translation ini 98.9 2E-08 4.4E-13 101.2 15.0 110 116-262 136-247 (587)
265 cd04126 Rab20 Rab20 subfamily. 98.9 2.6E-08 5.5E-13 88.7 13.5 70 115-195 44-114 (220)
266 COG1703 ArgK Putative periplas 98.9 6.4E-08 1.4E-12 89.0 16.0 195 19-267 51-256 (323)
267 PRK00007 elongation factor G; 98.9 3.9E-08 8.5E-13 101.1 16.5 67 114-195 74-141 (693)
268 TIGR00450 mnmE_trmE_thdF tRNA 98.9 1.6E-08 3.4E-13 98.8 12.9 73 114-195 250-324 (442)
269 cd02033 BchX Chlorophyllide re 98.9 3.5E-08 7.6E-13 92.9 14.4 45 17-61 29-74 (329)
270 PLN03071 GTP-binding nuclear p 98.9 4E-08 8.7E-13 87.0 13.6 111 115-266 62-173 (219)
271 cd02042 ParA ParA and ParB of 98.9 3.3E-08 7.2E-13 76.9 11.6 36 22-57 2-39 (104)
272 cd04121 Rab40 Rab40 subfamily. 98.9 3.8E-08 8.2E-13 85.5 13.1 112 115-264 55-166 (189)
273 PF00071 Ras: Ras family; Int 98.9 2.4E-08 5.2E-13 82.7 11.4 111 114-264 47-160 (162)
274 cd04108 Rab36_Rab34 Rab34/Rab3 98.9 1.9E-08 4E-13 85.3 10.8 114 115-266 49-166 (170)
275 CHL00189 infB translation init 98.9 3E-08 6.5E-13 101.9 14.2 115 114-264 294-409 (742)
276 PRK12740 elongation factor G; 98.9 6.1E-08 1.3E-12 99.2 15.7 68 114-195 59-126 (668)
277 PRK10463 hydrogenase nickel in 98.9 4.9E-08 1.1E-12 90.2 13.5 174 18-262 103-286 (290)
278 TIGR00101 ureG urease accessor 98.9 7.6E-08 1.7E-12 84.4 14.2 187 19-264 1-195 (199)
279 cd04129 Rho2 Rho2 subfamily. 98.9 3.4E-08 7.4E-13 84.8 11.8 123 116-264 50-172 (187)
280 cd01875 RhoG RhoG subfamily. 98.8 3.7E-08 8E-13 85.1 11.8 124 115-265 51-177 (191)
281 PRK00741 prfC peptide chain re 98.8 1.8E-07 3.9E-12 93.3 18.1 67 114-195 78-145 (526)
282 cd04104 p47_IIGP_like p47 (47- 98.8 1.7E-07 3.7E-12 81.5 15.6 130 116-267 53-186 (197)
283 TIGR03499 FlhF flagellar biosy 98.8 1.3E-08 2.8E-13 93.9 8.9 45 15-59 190-237 (282)
284 cd04162 Arl9_Arfrp2_like Arl9/ 98.8 7.7E-08 1.7E-12 80.9 12.6 113 114-261 43-162 (164)
285 cd04131 Rnd Rnd subfamily. Th 98.8 6.3E-08 1.4E-12 83.0 11.5 124 115-263 49-174 (178)
286 PRK05306 infB translation init 98.8 9.3E-08 2E-12 99.1 14.4 113 114-262 336-449 (787)
287 cd04133 Rop_like Rop subfamily 98.8 6.5E-08 1.4E-12 83.0 11.1 123 115-264 49-172 (176)
288 COG0541 Ffh Signal recognition 98.8 1.4E-07 2.9E-12 90.7 14.1 117 17-160 98-225 (451)
289 PRK04004 translation initiatio 98.8 2E-07 4.4E-12 94.1 16.2 129 116-262 72-215 (586)
290 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.8 1E-07 2.2E-12 85.6 12.3 125 115-264 61-187 (232)
291 COG5256 TEF1 Translation elong 98.8 1.2E-07 2.5E-12 90.5 13.1 105 114-255 84-201 (428)
292 PRK14722 flhF flagellar biosyn 98.8 1.9E-07 4.1E-12 89.3 14.4 45 14-58 132-179 (374)
293 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.8 1.1E-07 2.5E-12 81.9 11.8 124 115-263 53-178 (182)
294 PRK13351 elongation factor G; 98.7 3E-07 6.4E-12 94.5 16.7 67 114-195 72-139 (687)
295 COG1100 GTPase SAR1 and relate 98.7 1.2E-08 2.6E-13 89.1 5.5 122 20-142 6-137 (219)
296 PRK06731 flhF flagellar biosyn 98.7 2.4E-07 5.2E-12 85.0 14.1 151 20-197 76-227 (270)
297 PF00025 Arf: ADP-ribosylation 98.7 4.8E-08 1E-12 83.5 8.8 115 114-263 57-174 (175)
298 COG5623 CLP1 Predicted GTPase 98.7 3.7E-08 8E-13 90.6 8.1 119 10-129 90-234 (424)
299 TIGR00503 prfC peptide chain r 98.7 9.5E-07 2.1E-11 88.2 18.8 67 114-195 79-146 (527)
300 PTZ00258 GTP-binding protein; 98.7 7.4E-07 1.6E-11 85.6 17.2 42 114-158 84-126 (390)
301 COG0489 Mrp ATPases involved i 98.7 2.8E-07 6.2E-12 84.3 13.7 157 21-195 60-233 (265)
302 COG2894 MinD Septum formation 98.7 1E-07 2.2E-12 84.2 10.2 106 20-127 4-126 (272)
303 PF09140 MipZ: ATPase MipZ; I 98.7 1.8E-08 3.9E-13 90.7 5.5 39 22-60 2-43 (261)
304 cd04103 Centaurin_gamma Centau 98.7 3.1E-07 6.6E-12 77.1 12.6 106 116-263 48-157 (158)
305 COG1163 DRG Predicted GTPase [ 98.7 1.3E-07 2.9E-12 87.7 11.1 52 180-265 238-289 (365)
306 cd02034 CooC The accessory pro 98.7 3.9E-08 8.4E-13 79.1 6.5 35 22-56 2-37 (116)
307 cd04105 SR_beta Signal recogni 98.7 4.7E-07 1E-11 79.3 13.9 74 114-195 47-123 (203)
308 COG2229 Predicted GTPase [Gene 98.7 7.6E-07 1.7E-11 76.5 14.6 169 20-270 11-183 (187)
309 PF09439 SRPRB: Signal recogni 98.7 1.2E-07 2.6E-12 82.0 9.9 72 114-195 48-126 (181)
310 PTZ00327 eukaryotic translatio 98.7 2.1E-07 4.5E-12 91.4 12.2 114 114-267 116-235 (460)
311 PRK14723 flhF flagellar biosyn 98.7 5.8E-07 1.3E-11 92.5 15.4 153 16-197 182-339 (767)
312 PF02374 ArsA_ATPase: Anion-tr 98.7 7.8E-08 1.7E-12 89.7 8.3 41 19-59 1-42 (305)
313 PRK13886 conjugal transfer pro 98.6 4.1E-07 8.9E-12 82.0 12.5 146 22-190 6-154 (241)
314 cd03112 CobW_like The function 98.6 1.8E-07 3.8E-12 79.0 9.1 151 21-193 2-158 (158)
315 KOG1191 Mitochondrial GTPase [ 98.6 2.8E-07 6.1E-12 89.4 11.5 167 19-264 268-449 (531)
316 smart00053 DYNc Dynamin, GTPas 98.6 6.6E-07 1.4E-11 80.8 12.9 78 114-197 124-208 (240)
317 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.6 5.3E-07 1.2E-11 80.4 11.8 125 115-263 49-174 (222)
318 COG0003 ArsA Predicted ATPase 98.6 3E-07 6.5E-12 86.3 10.4 42 19-60 2-44 (322)
319 COG4917 EutP Ethanolamine util 98.6 1.9E-07 4.2E-12 75.7 7.8 104 118-262 40-143 (148)
320 cd01885 EF2 EF2 (for archaea a 98.6 3.3E-06 7.2E-11 75.3 16.4 66 114-194 72-138 (222)
321 PF13614 AAA_31: AAA domain; P 98.6 1.7E-07 3.7E-12 77.7 7.4 41 20-60 1-43 (157)
322 PTZ00099 rab6; Provisional 98.5 7.8E-07 1.7E-11 76.3 11.0 117 114-268 28-145 (176)
323 PTZ00132 GTP-binding nuclear p 98.5 2.5E-06 5.3E-11 74.8 14.4 116 115-270 58-173 (215)
324 KOG1144 Translation initiation 98.5 1.5E-06 3.2E-11 87.8 14.1 128 116-263 541-685 (1064)
325 COG0532 InfB Translation initi 98.5 4.4E-07 9.6E-12 88.9 10.3 111 115-263 55-168 (509)
326 cd01873 RhoBTB RhoBTB subfamil 98.5 1.5E-06 3.4E-11 75.7 12.0 127 114-263 65-194 (195)
327 PRK06995 flhF flagellar biosyn 98.5 2.2E-06 4.8E-11 84.5 13.3 43 16-58 253-298 (484)
328 KOG0780 Signal recognition par 98.5 8E-07 1.7E-11 84.2 9.6 127 11-159 93-225 (483)
329 smart00176 RAN Ran (Ras-relate 98.5 8.3E-07 1.8E-11 77.8 8.9 111 115-266 44-155 (200)
330 cd01850 CDC_Septin CDC/Septin. 98.5 1.2E-06 2.6E-11 80.6 10.4 44 148-197 115-159 (276)
331 PRK07560 elongation factor EF- 98.4 2.5E-06 5.4E-11 88.3 13.3 67 114-195 86-153 (731)
332 COG0050 TufB GTPases - transla 98.4 4E-06 8.6E-11 77.2 12.7 174 22-266 15-202 (394)
333 COG0552 FtsY Signal recognitio 98.4 4.9E-06 1.1E-10 77.8 13.2 40 17-56 137-177 (340)
334 cd01858 NGP_1 NGP-1. Autoanti 98.4 1.1E-06 2.5E-11 73.4 8.3 87 147-265 8-95 (157)
335 COG2895 CysN GTPases - Sulfate 98.4 7.3E-07 1.6E-11 83.6 7.2 100 114-255 85-193 (431)
336 KOG3022 Predicted ATPase, nucl 98.4 2.1E-06 4.5E-11 78.2 9.8 42 21-62 50-92 (300)
337 TIGR00347 bioD dethiobiotin sy 98.4 8.8E-06 1.9E-10 68.5 13.0 34 24-59 2-37 (166)
338 COG0378 HypB Ni2+-binding GTPa 98.3 5.4E-06 1.2E-10 72.2 11.1 181 17-263 10-199 (202)
339 cd01983 Fer4_NifH The Fer4_Nif 98.3 1E-05 2.2E-10 60.5 11.3 32 22-53 2-34 (99)
340 PRK14845 translation initiatio 98.3 8.6E-06 1.9E-10 86.7 14.3 131 116-265 527-673 (1049)
341 PTZ00416 elongation factor 2; 98.3 1.7E-06 3.6E-11 90.9 8.8 66 114-194 91-157 (836)
342 PF04548 AIG1: AIG1 family; I 98.3 8.6E-06 1.9E-10 71.8 12.1 133 114-268 48-189 (212)
343 KOG0781 Signal recognition par 98.3 4.3E-06 9.4E-11 81.1 10.3 161 17-197 376-546 (587)
344 COG1149 MinD superfamily P-loo 98.3 8.2E-06 1.8E-10 74.3 11.0 72 115-204 164-235 (284)
345 cd01856 YlqF YlqF. Proteins o 98.3 4.5E-06 9.8E-11 70.9 8.5 81 148-265 20-101 (171)
346 cd01849 YlqF_related_GTPase Yl 98.2 5.1E-06 1.1E-10 69.4 8.0 83 149-264 1-84 (155)
347 cd01859 MJ1464 MJ1464. This f 98.2 1E-05 2.2E-10 67.3 9.8 94 137-267 4-98 (156)
348 PF00350 Dynamin_N: Dynamin fa 98.2 2.5E-06 5.4E-11 71.4 6.1 67 114-191 100-168 (168)
349 KOG0090 Signal recognition par 98.2 1.1E-05 2.4E-10 71.1 9.8 142 116-264 83-238 (238)
350 KOG1145 Mitochondrial translat 98.2 1.8E-05 3.9E-10 78.0 12.2 111 114-262 200-313 (683)
351 TIGR03596 GTPase_YlqF ribosome 98.2 6.9E-06 1.5E-10 75.4 8.6 85 146-267 20-105 (276)
352 KOG0410 Predicted GTP binding 98.2 8E-06 1.7E-10 76.1 8.7 152 22-264 181-340 (410)
353 PF08477 Miro: Miro-like prote 98.2 1.2E-05 2.7E-10 63.1 8.8 65 116-192 51-119 (119)
354 TIGR00490 aEF-2 translation el 98.2 9E-06 1.9E-10 84.1 10.1 67 114-195 85-152 (720)
355 COG1419 FlhF Flagellar GTP-bin 98.1 3.2E-05 7E-10 74.2 12.5 148 18-195 202-352 (407)
356 KOG0462 Elongation factor-type 98.1 1.1E-05 2.5E-10 79.4 9.4 112 115-266 125-236 (650)
357 COG0480 FusA Translation elong 98.1 9.3E-05 2E-09 76.1 16.2 134 16-196 7-143 (697)
358 TIGR00991 3a0901s02IAP34 GTP-b 98.1 4.7E-05 1E-09 71.1 12.5 97 114-213 85-186 (313)
359 PF03205 MobB: Molybdopterin g 98.1 7.3E-06 1.6E-10 68.0 6.1 41 21-61 2-44 (140)
360 KOG0084 GTPase Rab1/YPT1, smal 98.1 2.6E-05 5.6E-10 67.8 9.5 112 116-265 59-172 (205)
361 PLN00116 translation elongatio 98.1 1.5E-05 3.2E-10 83.9 9.6 66 114-194 97-163 (843)
362 KOG0092 GTPase Rab5/YPT51 and 98.1 3.8E-05 8.3E-10 66.5 10.3 118 116-272 55-174 (200)
363 KOG0458 Elongation factor 1 al 98.1 3.3E-05 7.2E-10 76.5 10.9 108 114-256 254-373 (603)
364 COG3596 Predicted GTPase [Gene 98.0 0.0002 4.3E-09 65.6 14.9 132 114-265 86-222 (296)
365 KOG1490 GTP-binding protein CR 98.0 3.1E-05 6.8E-10 75.7 10.3 112 116-255 216-331 (620)
366 KOG0395 Ras-related GTPase [Ge 98.0 7E-05 1.5E-09 65.6 11.6 110 115-264 51-164 (196)
367 KOG0073 GTP-binding ADP-ribosy 98.0 0.00022 4.7E-09 60.6 13.9 115 114-262 59-179 (185)
368 cd01900 YchF YchF subfamily. 98.0 1.3E-05 2.9E-10 73.7 7.2 42 114-158 61-103 (274)
369 COG5019 CDC3 Septin family pro 98.0 0.00011 2.5E-09 69.4 13.3 121 114-266 81-224 (373)
370 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.9E-05 4.1E-10 73.0 7.8 83 148-267 25-108 (287)
371 KOG0078 GTP-binding protein SE 98.0 6.7E-05 1.5E-09 65.8 10.5 112 116-265 62-174 (207)
372 PF01583 APS_kinase: Adenylyls 98.0 1.6E-05 3.4E-10 67.3 6.3 43 18-60 1-44 (156)
373 PF04670 Gtr1_RagA: Gtr1/RagA 98.0 5.1E-05 1.1E-09 68.2 10.0 132 115-271 48-183 (232)
374 PF00735 Septin: Septin; Inte 98.0 5E-05 1.1E-09 70.1 10.1 50 148-204 114-164 (281)
375 PRK09601 GTP-binding protein Y 98.0 2.3E-05 5.1E-10 74.7 7.9 42 114-158 65-107 (364)
376 cd01855 YqeH YqeH. YqeH is an 97.9 6.1E-05 1.3E-09 64.8 9.6 89 148-266 35-126 (190)
377 COG0481 LepA Membrane GTPase L 97.9 3.4E-05 7.3E-10 75.1 8.5 111 114-266 75-187 (603)
378 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.9 6.8E-05 1.5E-09 65.3 9.5 116 116-271 72-191 (221)
379 PRK00090 bioD dithiobiotin syn 97.9 0.00032 7E-09 61.8 14.0 36 22-59 2-39 (222)
380 PF02492 cobW: CobW/HypB/UreG, 97.9 2E-05 4.3E-10 67.6 5.8 146 21-197 2-157 (178)
381 TIGR02836 spore_IV_A stage IV 97.9 0.00016 3.5E-09 70.0 12.3 30 13-42 11-41 (492)
382 PRK14721 flhF flagellar biosyn 97.9 0.00013 2.8E-09 71.0 11.6 45 14-58 186-233 (420)
383 KOG2825 Putative arsenite-tran 97.9 3.8E-05 8.2E-10 69.4 7.2 41 19-60 20-61 (323)
384 COG1618 Predicted nucleotide k 97.8 0.0003 6.4E-09 59.8 11.5 31 21-51 7-38 (179)
385 COG0529 CysC Adenylylsulfate k 97.8 4.8E-05 1E-09 65.5 6.6 43 17-59 21-64 (197)
386 COG5257 GCD11 Translation init 97.8 0.00015 3.2E-09 67.7 9.8 117 115-269 86-206 (415)
387 COG1217 TypA Predicted membran 97.8 0.00036 7.9E-09 67.9 12.7 127 114-275 67-204 (603)
388 PRK12289 GTPase RsgA; Reviewed 97.8 0.00011 2.4E-09 70.0 9.2 82 148-262 90-172 (352)
389 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 0.00012 2.7E-09 60.1 8.2 53 138-197 5-58 (141)
390 cd01853 Toc34_like Toc34-like 97.8 0.00025 5.4E-09 64.4 10.8 26 15-40 27-53 (249)
391 cd02027 APSK Adenosine 5'-phos 97.8 4.3E-05 9.2E-10 63.7 5.3 38 22-59 2-40 (149)
392 KOG1954 Endocytosis/signaling 97.8 0.00016 3.4E-09 68.6 9.4 161 15-197 54-227 (532)
393 PRK06067 flagellar accessory p 97.7 0.0002 4.3E-09 63.8 9.6 52 3-57 12-64 (234)
394 cd01124 KaiC KaiC is a circadi 97.7 0.00077 1.7E-08 57.2 12.6 38 22-59 2-40 (187)
395 PF00142 Fer4_NifH: 4Fe-4S iro 97.7 6.2E-05 1.3E-09 68.6 5.9 41 21-61 2-43 (273)
396 KOG0460 Mitochondrial translat 97.7 0.00021 4.5E-09 67.2 9.4 115 114-267 116-247 (449)
397 PF13479 AAA_24: AAA domain 97.7 0.00014 3.1E-09 64.1 7.7 36 18-61 2-38 (213)
398 PRK05541 adenylylsulfate kinas 97.7 7E-05 1.5E-09 63.7 5.4 43 13-55 1-44 (176)
399 PRK14493 putative bifunctional 97.7 6.6E-05 1.4E-09 69.1 5.3 39 19-58 1-40 (274)
400 KOG0076 GTP-binding ADP-ribosy 97.6 0.00074 1.6E-08 57.9 10.7 121 114-267 68-189 (197)
401 PF13671 AAA_33: AAA domain; P 97.6 0.00062 1.4E-08 55.2 9.9 31 21-56 1-32 (143)
402 PF06745 KaiC: KaiC; InterPro 97.6 0.0012 2.6E-08 58.3 12.4 43 16-58 16-60 (226)
403 PF13207 AAA_17: AAA domain; P 97.6 8.4E-05 1.8E-09 58.8 4.3 31 21-56 1-32 (121)
404 PRK00889 adenylylsulfate kinas 97.5 0.00015 3.3E-09 61.5 5.6 41 19-59 4-45 (175)
405 PRK07667 uridine kinase; Provi 97.5 0.00017 3.6E-09 62.7 5.8 40 17-56 15-55 (193)
406 KOG0098 GTPase Rab2, small G p 97.5 0.00075 1.6E-08 58.5 9.6 116 116-270 56-177 (216)
407 KOG0093 GTPase Rab3, small G p 97.5 0.00053 1.1E-08 57.4 8.2 109 116-264 71-182 (193)
408 TIGR02012 tigrfam_recA protein 97.5 0.00049 1.1E-08 64.7 9.0 49 5-56 43-93 (321)
409 COG3276 SelB Selenocysteine-sp 97.5 0.00088 1.9E-08 64.8 10.8 110 114-265 49-162 (447)
410 KOG0088 GTPase Rab21, small G 97.5 0.00072 1.6E-08 57.2 8.9 113 114-265 61-175 (218)
411 cd01394 radB RadB. The archaea 97.5 0.00021 4.5E-09 62.8 6.0 53 3-58 6-59 (218)
412 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.0042 9.1E-08 55.6 14.6 49 5-56 10-59 (237)
413 KOG0095 GTPase Rab30, small G 97.5 0.00058 1.2E-08 57.3 7.8 109 116-261 57-165 (213)
414 cd02028 UMPK_like Uridine mono 97.5 0.00015 3.3E-09 62.4 4.6 34 22-55 2-36 (179)
415 PRK00098 GTPase RsgA; Reviewed 97.5 0.00061 1.3E-08 63.3 8.9 83 148-261 81-163 (298)
416 PRK06696 uridine kinase; Valid 97.5 0.0002 4.3E-09 63.5 5.5 40 16-55 19-59 (223)
417 PRK13796 GTPase YqeH; Provisio 97.5 0.0012 2.6E-08 63.1 11.1 84 149-265 71-159 (365)
418 KOG2655 Septin family protein 97.4 0.002 4.3E-08 61.3 12.4 82 116-204 80-180 (366)
419 COG0012 Predicted GTPase, prob 97.4 0.00037 8.1E-09 66.2 7.1 99 22-158 5-108 (372)
420 TIGR00092 GTP-binding protein 97.4 0.00065 1.4E-08 65.0 8.5 99 22-158 5-108 (368)
421 cd04102 RabL3 RabL3 (Rab-like3 97.4 0.0015 3.3E-08 57.3 10.2 71 116-196 55-144 (202)
422 COG1348 NifH Nitrogenase subun 97.4 0.0002 4.3E-09 64.2 4.6 42 20-61 2-44 (278)
423 PRK04328 hypothetical protein; 97.4 0.006 1.3E-07 55.1 14.3 50 4-56 11-61 (249)
424 TIGR02237 recomb_radB DNA repa 97.4 0.00038 8.3E-09 60.6 6.2 49 5-56 1-50 (209)
425 TIGR00157 ribosome small subun 97.4 0.0014 3E-08 59.3 9.9 81 149-262 38-120 (245)
426 smart00382 AAA ATPases associa 97.3 0.00019 4.1E-09 56.2 3.5 41 20-60 3-44 (148)
427 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00025 5.4E-09 63.9 4.6 35 22-56 2-37 (249)
428 cd03116 MobB Molybdenum is an 97.3 0.00044 9.5E-09 58.6 5.6 40 19-58 1-41 (159)
429 PRK05480 uridine/cytidine kina 97.3 0.00042 9.1E-09 60.6 5.5 39 17-57 4-43 (209)
430 PF06414 Zeta_toxin: Zeta toxi 97.3 0.0048 1.1E-07 53.6 12.2 116 17-157 13-129 (199)
431 PRK03846 adenylylsulfate kinas 97.3 0.00042 9.1E-09 60.3 5.5 44 16-59 21-65 (198)
432 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.0069 1.5E-07 53.4 13.2 41 16-56 13-54 (224)
433 cd02019 NK Nucleoside/nucleoti 97.3 0.00048 1E-08 49.9 4.7 31 22-54 2-33 (69)
434 PRK06762 hypothetical protein; 97.3 0.00034 7.4E-09 58.7 4.5 34 19-55 2-36 (166)
435 PRK12374 putative dithiobiotin 97.3 0.011 2.5E-07 52.6 14.5 38 21-60 4-43 (231)
436 TIGR03597 GTPase_YqeH ribosome 97.3 0.0024 5.2E-08 60.9 10.7 86 148-264 64-152 (360)
437 TIGR00993 3a0901s04IAP86 chlor 97.3 0.0035 7.6E-08 64.0 12.2 100 114-216 165-277 (763)
438 PHA00729 NTP-binding motif con 97.2 0.00033 7.2E-09 62.7 4.4 26 18-43 16-42 (226)
439 TIGR00176 mobB molybdopterin-g 97.2 0.00047 1E-08 58.1 5.1 36 22-57 2-38 (155)
440 cd01120 RecA-like_NTPases RecA 97.2 0.00056 1.2E-08 55.8 4.9 38 22-59 2-40 (165)
441 PLN00023 GTP-binding protein; 97.2 0.003 6.4E-08 59.6 10.1 68 115-195 83-165 (334)
442 PF13173 AAA_14: AAA domain 97.1 0.00061 1.3E-08 55.0 4.6 37 21-58 4-41 (128)
443 PRK09361 radB DNA repair and r 97.1 0.00087 1.9E-08 59.2 6.0 40 16-55 20-60 (225)
444 PF13401 AAA_22: AAA domain; P 97.1 0.00049 1.1E-08 54.9 4.0 41 18-58 3-49 (131)
445 PF00485 PRK: Phosphoribulokin 97.1 0.00056 1.2E-08 59.2 4.7 35 21-55 1-40 (194)
446 COG1484 DnaC DNA replication p 97.1 0.00049 1.1E-08 62.6 4.5 46 9-54 95-141 (254)
447 PRK09270 nucleoside triphospha 97.1 0.0007 1.5E-08 60.3 5.3 45 12-56 26-72 (229)
448 PF13245 AAA_19: Part of AAA d 97.1 0.00082 1.8E-08 49.9 4.9 35 19-53 10-49 (76)
449 PF01695 IstB_IS21: IstB-like 97.1 0.00068 1.5E-08 58.4 5.1 42 13-54 41-83 (178)
450 PRK06526 transposase; Provisio 97.1 0.00032 7E-09 63.8 3.2 40 13-52 92-132 (254)
451 COG4963 CpaE Flp pilus assembl 97.1 0.016 3.4E-07 55.3 14.4 159 18-194 103-284 (366)
452 PRK00279 adk adenylate kinase; 97.1 0.048 1E-06 47.8 16.8 21 22-42 3-24 (215)
453 TIGR00313 cobQ cobyric acid sy 97.1 0.0084 1.8E-07 59.4 13.1 35 22-58 1-37 (475)
454 COG4108 PrfC Peptide chain rel 97.1 0.018 3.9E-07 56.0 14.7 67 114-195 80-147 (528)
455 TIGR02475 CobW cobalamin biosy 97.1 0.0036 7.8E-08 59.4 10.0 38 20-59 5-43 (341)
456 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.00079 1.7E-08 61.3 5.3 40 16-55 33-73 (259)
457 PRK07952 DNA replication prote 97.1 0.00066 1.4E-08 61.5 4.7 45 9-53 88-134 (244)
458 PRK11537 putative GTP-binding 97.1 0.0025 5.5E-08 59.9 8.7 153 20-196 5-165 (318)
459 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.0028 6E-08 58.6 8.9 81 148-261 79-160 (287)
460 COG5192 BMS1 GTP-binding prote 97.1 0.0033 7.1E-08 62.7 9.6 113 16-200 66-182 (1077)
461 PRK01077 cobyrinic acid a,c-di 97.1 0.013 2.9E-07 57.6 14.1 39 19-57 3-43 (451)
462 KOG0091 GTPase Rab39, small G 97.1 0.022 4.7E-07 48.7 13.2 116 116-268 59-180 (213)
463 cd04178 Nucleostemin_like Nucl 97.1 0.0016 3.5E-08 55.8 6.6 51 149-204 1-52 (172)
464 cd01672 TMPK Thymidine monopho 97.1 0.0009 2E-08 56.9 5.0 34 21-54 2-36 (200)
465 cd00983 recA RecA is a bacter 97.0 0.002 4.4E-08 60.7 7.7 39 17-55 53-92 (325)
466 PRK14494 putative molybdopteri 97.0 0.00094 2E-08 59.9 5.1 36 19-54 1-37 (229)
467 PRK09354 recA recombinase A; P 97.0 0.0023 5.1E-08 60.8 8.1 49 5-56 48-98 (349)
468 PRK05439 pantothenate kinase; 97.0 0.001 2.3E-08 62.3 5.6 40 16-55 83-125 (311)
469 KOG1491 Predicted GTP-binding 97.0 0.0018 3.9E-08 60.9 7.0 99 22-158 23-125 (391)
470 TIGR00554 panK_bact pantothena 97.0 0.00062 1.4E-08 63.2 3.9 40 17-56 60-102 (290)
471 PF08433 KTI12: Chromatin asso 97.0 0.00075 1.6E-08 62.0 4.4 38 20-57 2-40 (270)
472 COG4088 Predicted nucleotide k 97.0 0.00061 1.3E-08 60.2 3.5 37 20-56 2-39 (261)
473 PRK01889 GTPase RsgA; Reviewed 97.0 0.0012 2.7E-08 62.9 5.9 110 115-261 72-193 (356)
474 PRK08118 topology modulation p 97.0 0.00064 1.4E-08 57.8 3.5 23 20-42 2-25 (167)
475 PRK09183 transposase/IS protei 97.0 0.0012 2.5E-08 60.3 5.2 41 13-53 96-137 (259)
476 cd02025 PanK Pantothenate kina 97.0 0.001 2.2E-08 59.1 4.7 36 22-57 2-40 (220)
477 PRK09302 circadian clock prote 96.9 0.017 3.6E-07 57.6 13.6 52 5-59 20-73 (509)
478 smart00275 G_alpha G protein a 96.9 0.0031 6.8E-08 59.8 8.1 132 115-263 184-332 (342)
479 cd00984 DnaB_C DnaB helicase C 96.9 0.0016 3.5E-08 57.8 5.8 50 5-58 3-54 (242)
480 PRK08233 hypothetical protein; 96.9 0.00084 1.8E-08 56.7 3.8 37 19-57 3-40 (182)
481 KOG0087 GTPase Rab11/YPT3, sma 96.9 0.003 6.6E-08 55.7 7.1 108 117-261 65-172 (222)
482 cd02023 UMPK Uridine monophosp 96.9 0.0011 2.4E-08 57.3 4.4 33 22-56 2-35 (198)
483 KOG0465 Mitochondrial elongati 96.9 0.0086 1.9E-07 60.2 11.0 68 114-196 103-171 (721)
484 TIGR00455 apsK adenylylsulfate 96.9 0.0017 3.7E-08 55.5 5.5 43 16-58 15-58 (184)
485 cd00009 AAA The AAA+ (ATPases 96.9 0.0015 3.3E-08 51.6 4.8 40 19-58 19-59 (151)
486 TIGR00041 DTMP_kinase thymidyl 96.9 0.0015 3.2E-08 56.1 5.0 34 20-53 4-38 (195)
487 PRK08506 replicative DNA helic 96.9 0.011 2.4E-07 58.5 11.8 51 5-59 182-233 (472)
488 PF03266 NTPase_1: NTPase; In 96.9 0.0021 4.6E-08 54.9 5.9 28 22-49 2-30 (168)
489 PRK05632 phosphate acetyltrans 96.9 0.034 7.4E-07 57.5 15.7 38 20-59 3-42 (684)
490 TIGR03348 VI_IcmF type VI secr 96.9 0.0029 6.3E-08 69.0 8.2 81 114-194 160-256 (1169)
491 PRK13808 adenylate kinase; Pro 96.9 0.055 1.2E-06 51.2 15.7 21 22-42 3-24 (333)
492 cd00544 CobU Adenosylcobinamid 96.8 0.0037 8E-08 53.5 6.9 28 22-52 2-30 (169)
493 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0024 5.2E-08 56.4 6.0 49 5-56 9-58 (229)
494 PF13481 AAA_25: AAA domain; P 96.8 0.0018 3.9E-08 55.4 4.9 40 20-59 33-83 (193)
495 COG0523 Putative GTPases (G3E 96.8 0.022 4.7E-07 53.7 12.5 148 22-197 4-161 (323)
496 PRK08181 transposase; Validate 96.8 0.0011 2.5E-08 60.8 3.8 43 12-54 98-142 (269)
497 PF07728 AAA_5: AAA domain (dy 96.8 0.0022 4.7E-08 52.1 5.1 36 22-60 2-38 (139)
498 KOG1143 Predicted translation 96.8 0.012 2.5E-07 56.3 10.4 219 21-271 169-393 (591)
499 PRK10751 molybdopterin-guanine 96.8 0.0021 4.6E-08 55.3 5.1 40 18-57 5-45 (173)
500 KOG1707 Predicted Ras related/ 96.8 0.011 2.5E-07 59.0 10.8 27 14-40 4-31 (625)
No 1
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=100.00 E-value=1.6e-59 Score=405.31 Aligned_cols=262 Identities=61% Similarity=1.088 Sum_probs=242.9
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 97 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~ 97 (284)
.++++|+||| |||||+|.++.+|....||++.+|||||+++.+.|+..+|||++|++.|||+.+.+||||++++|||++
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl 82 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYL 82 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHH
Confidence 3579999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 023298 98 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 177 (284)
Q Consensus 98 ~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~ 177 (284)
..|+ +||.+.+..+ +.+|+++|||||+|+|+|.+..++++++++..+++.+++||+|+....+-.+|++.++.++++|
T Consensus 83 ~~Nl-dwL~~~~Gd~-eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAM 160 (273)
T KOG1534|consen 83 LENL-DWLEEEIGDV-EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAM 160 (273)
T ss_pred HHHH-HHHHhhccCc-cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHH
Confidence 9999 9999887766 8899999999999999999999999999988889999999999999999999999999999999
Q ss_pred HhcCCCEEEEecCCccccc--hhhhhhhcCcchHHHHH--HhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccH
Q 023298 178 VQLELPHVNILSKMDLVTN--KKEIEDYLNPESQFLLS--ELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSI 253 (284)
Q Consensus 178 ~~~~~p~IlVlNK~Dll~~--~~~l~~~l~~~~~~l~~--~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l 253 (284)
.+++.|+|+|++|.|++++ +.++++|++.+...+.+ +++. .++|+.+|++.|++++++|++++|+|+...+.+++
T Consensus 161 i~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~-~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi 239 (273)
T KOG1534|consen 161 ISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINL-RSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESI 239 (273)
T ss_pred HHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhccccccc-ccHHHHHHHHHHHHHhccccceeeeecCCCCHHHH
Confidence 9999999999999999974 33789999877666653 3443 34799999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 023298 254 RYVLSQIDNCIQWGEDADLKIKDFDPEDDD 283 (284)
Q Consensus 254 ~~Ll~~I~~~l~~g~d~~~~~~~~~~~~~~ 283 (284)
+.++..|+.+.|+||+.||++||.+|.|++
T Consensus 240 ~~iL~~ID~aiQy~Ed~E~k~~d~~e~d~~ 269 (273)
T KOG1534|consen 240 NIILSYIDDAIQYGEDLEPKEPDEDEDDDS 269 (273)
T ss_pred HHHHHHHHHHHHhccccCccCCCccccccc
Confidence 999999999999999999999987665553
No 2
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=100.00 E-value=6.1e-55 Score=382.12 Aligned_cols=246 Identities=42% Similarity=0.769 Sum_probs=227.5
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 97 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~ 97 (284)
|++++||||| |||||+|..+++.++..||+|++|||||++...+|++++||++++++.++|+++++||||++++|||.+
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l 81 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYL 81 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHH
Confidence 6789999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 023298 98 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 177 (284)
Q Consensus 98 ~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~ 177 (284)
..++ +||.++|+.. .+.|++||||||+|.|+++....++.+.|.+.+++.+++.|+|+..+++|+.|++.++.++.+|
T Consensus 82 ~~~i-dwl~~~l~~~-~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tM 159 (290)
T KOG1533|consen 82 EANI-DWLLEKLKPL-TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATM 159 (290)
T ss_pred Hhhh-HHHHHHhhhc-cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHH
Confidence 9999 9999999986 7899999999999999999999999999988899999999999999999999999999999999
Q ss_pred HhcCCCEEEEecCCccccchhhh---hhhcC--cchHHHHHHhhh-cchhHHHHHHHHHHHHHhccCCceEEEEeccCcc
Q 023298 178 VQLELPHVNILSKMDLVTNKKEI---EDYLN--PESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES 251 (284)
Q Consensus 178 ~~~~~p~IlVlNK~Dll~~~~~l---~~~l~--~~~~~l~~~l~~-~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~ 251 (284)
+.++.|||+|++|+|++++-..+ .++.. .|.++|...++. +..++|++|+.+|++++++|++++|.+++..+++
T Consensus 160 l~melphVNvlSK~Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nke 239 (290)
T KOG1533|consen 160 LHMELPHVNVLSKADLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKE 239 (290)
T ss_pred HhhcccchhhhhHhHHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHH
Confidence 99999999999999998754222 12222 256677666654 4567999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCC
Q 023298 252 SIRYVLSQIDNCIQW 266 (284)
Q Consensus 252 ~l~~Ll~~I~~~l~~ 266 (284)
++.+|.+.||++.+|
T Consensus 240 Sml~l~~~IDkAnGy 254 (290)
T KOG1533|consen 240 SMLRLQQTIDKANGY 254 (290)
T ss_pred HHHHHHHHHHhccCe
Confidence 999999999999995
No 3
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=100.00 E-value=3e-54 Score=387.45 Aligned_cols=235 Identities=47% Similarity=0.839 Sum_probs=185.2
Q ss_pred EECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhcHH
Q 023298 24 VFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 102 (284)
Q Consensus 24 viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~~~ 102 (284)
|+||| |||||+|.++++|+...||+|.+|||||+++.+||++++||||+|+++++|+++++||||++++|||++..|+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~LGPNGal~~~me~l~~~~- 79 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYGLGPNGALIYCMEYLEENI- 79 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T--HHHHHHHHHHHHGGGH-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcCcCCcHHHHHHHHHHHHHH-
Confidence 79999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 023298 103 DWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 182 (284)
Q Consensus 103 ~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~ 182 (284)
+|+.+++++. +.+|++||||||+|.|.|+..+.+++++|++ +.+.+++||+|+..+.+|..|+++++.+++.+.+++.
T Consensus 80 d~l~~~i~~~-~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~l 157 (238)
T PF03029_consen 80 DWLDEEIEKY-EDDYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLEL 157 (238)
T ss_dssp HHHHHHHHHH-H-SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhc-CCcEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCC
Confidence 9999999877 7799999999999999999999999999976 6788999999999999999999999999999999999
Q ss_pred CEEEEecCCccccchh-hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCc-eEEEEeccCcccHHHHHHHH
Q 023298 183 PHVNILSKMDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV-SFMPLDLRKESSIRYVLSQI 260 (284)
Q Consensus 183 p~IlVlNK~Dll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~-~~ipiSa~~~~~l~~Ll~~I 260 (284)
|+|+|+||+|++++.. ...++. .+++.+...++.. +++++.+|++++++|+.. +|+|+|+++++|+.+|++.|
T Consensus 158 P~vnvlsK~Dl~~~~~~~~l~~~-~d~~~l~~~~~~~----~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 158 PHVNVLSKIDLLSKYLEFILEWF-EDPDSLEDLLESD----YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp EEEEEE--GGGS-HHHHHHHHHH-HSHHHHHHHHHT-----HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred CEEEeeeccCcccchhHHHHHHh-cChHHHHHHHHHH----HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence 9999999999987220 222333 2455555544432 889999999999999998 99999999999999999999
Q ss_pred HHhcCC
Q 023298 261 DNCIQW 266 (284)
Q Consensus 261 ~~~l~~ 266 (284)
+++++|
T Consensus 233 d~a~~y 238 (238)
T PF03029_consen 233 DKANQY 238 (238)
T ss_dssp HHHHH-
T ss_pred HHHhcC
Confidence 999876
No 4
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-46 Score=333.37 Aligned_cols=247 Identities=23% Similarity=0.420 Sum_probs=221.8
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhH
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 95 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e 95 (284)
.+|.+++|+|+| |||||+|+.|..|+...+.++++|||||+....||+..+||||.+...++|++|+|||||+++.|++
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 568899999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcHHHHHHHHhhccC-CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q 023298 96 HLEDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 174 (284)
Q Consensus 96 ~~~~~~~~~l~~~l~~~~-~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l 174 (284)
++..++++.++ -+++.+ ..+||+||||||+|.|.|+..|..+...|.. .+..+++|++|+.+..+|..|+++++.+.
T Consensus 97 LF~tk~dqv~~-~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~las-s~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 97 LFATKFDQVIE-LIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLAS-SFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHH-HHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhh-cCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 99999975432 233222 5689999999999999999999999999854 46789999999999999999999999999
Q ss_pred HHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-CCceEEEEeccCcccH
Q 023298 175 SAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSI 253 (284)
Q Consensus 175 ~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-~~~~~ipiSa~~~~~l 253 (284)
+.+.+.++|+|+|+||+|+.+.+ -..+|+. |++.+.+++++..++....|.+++.-.+++| ..++++.+|+.+|.|+
T Consensus 175 Silyktklp~ivvfNK~Dv~d~~-fa~eWm~-DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 175 SILYKTKLPFIVVFNKTDVSDSE-FALEWMT-DFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHhccCCeEEEEecccccccH-HHHHHHH-HHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 99999999999999999998777 4567774 8889999998766778889999999999884 7799999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 023298 254 RYVLSQIDNCIQWG 267 (284)
Q Consensus 254 ~~Ll~~I~~~l~~g 267 (284)
++++.+|++.+.+.
T Consensus 253 ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 253 DDFFTAVDESVDEY 266 (366)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999776543
No 5
>PRK13768 GTPase; Provisional
Probab=100.00 E-value=2e-38 Score=287.31 Aligned_cols=246 Identities=29% Similarity=0.523 Sum_probs=214.8
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 97 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~ 97 (284)
+++++|.|++ |||||+|.+++.+++..|++|++||+|||.+..+|.+++|+++.++..++|.++++||||+++++++++
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~~~~~~i~~~~~~~~v~~~~~l~p~~~~~~~~~~~ 81 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPYTPDFDVRDYVTAREIMKKYGLGPNGALIASVDLL 81 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCCCCCcchhhheeHHHHHHHcCCCCchHHHHHHHHH
Confidence 4678999999 999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 023298 98 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 177 (284)
Q Consensus 98 ~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~ 177 (284)
..+. +|+.+.++.. +.+|+++||||+++.+.++..++.+.++++... ..+++|++|+....++.++....+..+..+
T Consensus 82 ~~~~-~~l~~~l~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~ 158 (253)
T PRK13768 82 LTKA-DEIKEEIESL-DADYVLVDTPGQMELFAFRESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQ 158 (253)
T ss_pred HHHH-HHHHHHHHhc-CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHH
Confidence 8888 7888888776 679999999999999988898999999987544 678999999987777888766665556666
Q ss_pred HhcCCCEEEEecCCccccchhhh---hhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC-ceEEEEeccCcccH
Q 023298 178 VQLELPHVNILSKMDLVTNKKEI---EDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSI 253 (284)
Q Consensus 178 ~~~~~p~IlVlNK~Dll~~~~~l---~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~-~~~ipiSa~~~~~l 253 (284)
.+.++|+++|+||+|++++. +. .++++ +++.+.+++....+.. ++|+.+|++.+++++. .+++|+|+++++|+
T Consensus 159 ~~~~~~~i~v~nK~D~~~~~-~~~~~~~~l~-~~~~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl 235 (253)
T PRK13768 159 LRLGLPQIPVLNKADLLSEE-ELERILKWLE-DPEYLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGF 235 (253)
T ss_pred HHcCCCEEEEEEhHhhcCch-hHHHHHHHHh-CHHHHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCH
Confidence 67899999999999998754 33 33443 6777777776655555 8999999999999875 58999999999999
Q ss_pred HHHHHHHHHhcCCCCCC
Q 023298 254 RYVLSQIDNCIQWGEDA 270 (284)
Q Consensus 254 ~~Ll~~I~~~l~~g~d~ 270 (284)
++|++.|.+.++.++|.
T Consensus 236 ~~L~~~I~~~l~~~~~~ 252 (253)
T PRK13768 236 DELYAAIQEVFCGGEDL 252 (253)
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 99999999999999985
No 6
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=8e-22 Score=179.52 Aligned_cols=172 Identities=15% Similarity=0.194 Sum_probs=135.0
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
.|.|+|.| ||||||..+|- |+++.+|-=-||.+.. .|+..++
T Consensus 8 fVaIiGrPNvGKSTLlN~l~------G~KisIvS~k~QTTR~------~I~GI~t------------------------- 50 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALV------GQKISIVSPKPQTTRN------RIRGIVT------------------------- 50 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHh------cCceEeecCCcchhhh------heeEEEE-------------------------
Confidence 38899999 99999998875 5899999988888742 1222110
Q ss_pred cHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCC-CCCHHHHHHHHHHHHHHH
Q 023298 100 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAM 177 (284)
Q Consensus 100 ~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~-~~~~~~~i~~~l~~l~~~ 177 (284)
..++|+||+||||.++ .++.+++.|++... +....++++|++|+.. +...+.++...+.
T Consensus 51 ------------~~~~QiIfvDTPGih~--pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk----- 111 (298)
T COG1159 51 ------------TDNAQIIFVDTPGIHK--PKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLK----- 111 (298)
T ss_pred ------------cCCceEEEEeCCCCCC--cchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHh-----
Confidence 1167999999999999 67888888888765 4566789999999987 6777777765543
Q ss_pred HhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHH
Q 023298 178 VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVL 257 (284)
Q Consensus 178 ~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll 257 (284)
+.+.|+++++||+|.++++..+..+. ..+...+.|.+++|+||++|.|++.|+
T Consensus 112 -~~~~pvil~iNKID~~~~~~~l~~~~--------------------------~~~~~~~~f~~ivpiSA~~g~n~~~L~ 164 (298)
T COG1159 112 -KTKTPVILVVNKIDKVKPKTVLLKLI--------------------------AFLKKLLPFKEIVPISALKGDNVDTLL 164 (298)
T ss_pred -hcCCCeEEEEEccccCCcHHHHHHHH--------------------------HHHHhhCCcceEEEeeccccCCHHHHH
Confidence 45789999999999988762233332 222345677899999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCC
Q 023298 258 SQIDNCIQWGEDADLKIK 275 (284)
Q Consensus 258 ~~I~~~l~~g~d~~~~~~ 275 (284)
+.+.+.||+||...|.+-
T Consensus 165 ~~i~~~Lpeg~~~yp~d~ 182 (298)
T COG1159 165 EIIKEYLPEGPWYYPEDQ 182 (298)
T ss_pred HHHHHhCCCCCCcCChhh
Confidence 999999999999998776
No 7
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.78 E-value=8e-18 Score=153.60 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=112.5
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
.|.|+|++ ||||||...|.. .++..+.--||.+... ++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~------~~~~~vs~~~~TTr~~------i~~---------------------------- 41 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHG------QKISITSPKAQTTRNR------ISG---------------------------- 41 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhC------CcEeecCCCCCcccCc------EEE----------------------------
Confidence 48899999 999999999975 4555444334432210 000
Q ss_pred cHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHH-HhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 023298 100 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 178 (284)
Q Consensus 100 ~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l-~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~ 178 (284)
+....+.+++++||||+.+. .+.....|.+.. .....+++++|++|+....+...++.. .+.
T Consensus 42 ---------i~~~~~~qii~vDTPG~~~~--~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~------~l~ 104 (270)
T TIGR00436 42 ---------IHTTGASQIIFIDTPGFHEK--KHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLT------KLQ 104 (270)
T ss_pred ---------EEEcCCcEEEEEECcCCCCC--cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHH------HHH
Confidence 00001457899999999873 334444454433 223345789999999876444333322 233
Q ss_pred hcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHH
Q 023298 179 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 258 (284)
Q Consensus 179 ~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~ 258 (284)
+.+.|+++|+||+|+..+. .+.+.. .++....++..++|+||++|.|+++|++
T Consensus 105 ~~~~p~ilV~NK~Dl~~~~-~~~~~~--------------------------~~~~~~~~~~~v~~iSA~~g~gi~~L~~ 157 (270)
T TIGR00436 105 NLKRPVVLTRNKLDNKFKD-KLLPLI--------------------------DKYAILEDFKDIVPISALTGDNTSFLAA 157 (270)
T ss_pred hcCCCEEEEEECeeCCCHH-HHHHHH--------------------------HHHHhhcCCCceEEEecCCCCCHHHHHH
Confidence 5689999999999997433 222111 1112234456899999999999999999
Q ss_pred HHHHhcCCCCCCCCCCC
Q 023298 259 QIDNCIQWGEDADLKIK 275 (284)
Q Consensus 259 ~I~~~l~~g~d~~~~~~ 275 (284)
.|.+.+|++|...|.+-
T Consensus 158 ~l~~~l~~~~~~~~~~~ 174 (270)
T TIGR00436 158 FIEVHLPEGPFRYPEDY 174 (270)
T ss_pred HHHHhCCCCCCCCCCcc
Confidence 99999999998777654
No 8
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=8.3e-17 Score=148.03 Aligned_cols=172 Identities=20% Similarity=0.279 Sum_probs=113.9
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
.+.|+|++ ||||||+..|. |.++..+.-.||.+... ++. +
T Consensus 7 ~V~iiG~pn~GKSTLin~L~------g~~~~~vs~~~~tt~~~------i~~------------i--------------- 47 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTRHR------IRG------------I--------------- 47 (292)
T ss_pred EEEEECCCCCCHHHHHHHHh------CCceeecCCCCCccccc------EEE------------E---------------
Confidence 48899999 99999999886 46666666555543210 000 0
Q ss_pred cHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCC-CCCHHHHHHHHHHHHHHH
Q 023298 100 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAM 177 (284)
Q Consensus 100 ~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~-~~~~~~~i~~~l~~l~~~ 177 (284)
.. ..+.+++++||||+.+ ......+.+..... .....++++|++|+.. +......+... +
T Consensus 48 ---------~~-~~~~qi~~iDTPG~~~--~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~------l 109 (292)
T PRK00089 48 ---------VT-EDDAQIIFVDTPGIHK--PKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEK------L 109 (292)
T ss_pred ---------EE-cCCceEEEEECCCCCC--chhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHH------H
Confidence 00 0145899999999876 33344444544332 3334678999999986 33333333222 2
Q ss_pred HhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHH
Q 023298 178 VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVL 257 (284)
Q Consensus 178 ~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll 257 (284)
...+.|+++|+||+|+...+..+...+ ..+.+.+++..++|+||+++.|++.|+
T Consensus 110 ~~~~~pvilVlNKiDl~~~~~~l~~~~--------------------------~~l~~~~~~~~i~~iSA~~~~gv~~L~ 163 (292)
T PRK00089 110 KKVKTPVILVLNKIDLVKDKEELLPLL--------------------------EELSELMDFAEIVPISALKGDNVDELL 163 (292)
T ss_pred hhcCCCEEEEEECCcCCCCHHHHHHHH--------------------------HHHHhhCCCCeEEEecCCCCCCHHHHH
Confidence 245789999999999984331333222 112234567889999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCC
Q 023298 258 SQIDNCIQWGEDADLKIK 275 (284)
Q Consensus 258 ~~I~~~l~~g~d~~~~~~ 275 (284)
+.+.+.+++++...+.+-
T Consensus 164 ~~L~~~l~~~~~~y~~~~ 181 (292)
T PRK00089 164 DVIAKYLPEGPPYYPEDQ 181 (292)
T ss_pred HHHHHhCCCCCCCCCCCC
Confidence 999999999998766553
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=6.2e-16 Score=148.02 Aligned_cols=162 Identities=13% Similarity=0.168 Sum_probs=117.1
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
.|.++|-| ||||||...|+. ++.++|+-=|+.+. |- .|+-+
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g------~r~AIV~D~pGvTR----------Dr--------~y~~~-------------- 46 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTG------RRIAIVSDTPGVTR----------DR--------IYGDA-------------- 46 (444)
T ss_pred EEEEECCCCCcHHHHHHHHhC------CeeeEeecCCCCcc----------CC--------cccee--------------
Confidence 49999999 999999999886 89999998888863 21 11111
Q ss_pred cHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHH
Q 023298 100 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAM 177 (284)
Q Consensus 100 ~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~ 177 (284)
++. +..+.+|||+|..... ...++..+..+ +.++..+++++|++|+...-++ +..++.+|.
T Consensus 47 --------~~~---~~~f~lIDTgGl~~~~-~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr----- 109 (444)
T COG1160 47 --------EWL---GREFILIDTGGLDDGD-EDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR----- 109 (444)
T ss_pred --------EEc---CceEEEEECCCCCcCC-chHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-----
Confidence 111 4569999999987421 12445555444 3455667899999999876444 454666543
Q ss_pred HhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHH
Q 023298 178 VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVL 257 (284)
Q Consensus 178 ~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll 257 (284)
+.++|+|+|+||+|..+.+....+ +..+||.+++||||.+|.|+.+|+
T Consensus 110 -~~~kpviLvvNK~D~~~~e~~~~e-------------------------------fyslG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 110 -RSKKPVILVVNKIDNLKAEELAYE-------------------------------FYSLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred -hcCCCEEEEEEcccCchhhhhHHH-------------------------------HHhcCCCCceEeehhhccCHHHHH
Confidence 677999999999997633211111 245788999999999999999999
Q ss_pred HHHHHhcCCCCCC
Q 023298 258 SQIDNCIQWGEDA 270 (284)
Q Consensus 258 ~~I~~~l~~g~d~ 270 (284)
+.+.+.+| +++.
T Consensus 158 d~v~~~l~-~~e~ 169 (444)
T COG1160 158 DAVLELLP-PDEE 169 (444)
T ss_pred HHHHhhcC-Cccc
Confidence 99999998 4443
No 10
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=6.2e-15 Score=141.44 Aligned_cols=128 Identities=18% Similarity=0.216 Sum_probs=85.8
Q ss_pred CEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCCCC--CCHHHHHHHHHHHHHHHHh--cCCCEEEEecC
Q 023298 116 DYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQ--LELPHVNILSK 190 (284)
Q Consensus 116 ~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~~~--~~~~~~i~~~l~~l~~~~~--~~~p~IlVlNK 190 (284)
+++++||||+++... ...++.+++++++. .++++|++|+... .++..-+..++..+..... .++|.|+|+||
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r---advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNK 284 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLER---CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNK 284 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHh---CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeC
Confidence 489999999987432 22356777787765 3689999998743 2333333344333333221 46899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC-ceEEEEeccCcccHHHHHHHHHHhcCCCCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWGED 269 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~-~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d 269 (284)
+|+..++ ++.+.+ .++.+.+++ ..++|+||+++.|+++|++.|.+.+++++.
T Consensus 285 iDl~~~~-el~~~l--------------------------~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 285 IDLLDEE-EAEERA--------------------------KAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred CccCChH-HHHHHH--------------------------HHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcc
Confidence 9987543 332221 112223344 379999999999999999999999999877
Q ss_pred CCCC
Q 023298 270 ADLK 273 (284)
Q Consensus 270 ~~~~ 273 (284)
..|.
T Consensus 338 ~~~~ 341 (390)
T PRK12298 338 EEAE 341 (390)
T ss_pred cCCc
Confidence 6543
No 11
>PRK15494 era GTPase Era; Provisional
Probab=99.64 E-value=7.2e-15 Score=138.63 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=84.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHH-HhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l-~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.+++|+||||+++. .......+.+.. .....+++++|++|+... ......+.. .+...+.|.|+|+||+
T Consensus 99 ~~qi~~~DTpG~~~~--~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~------~l~~~~~p~IlViNKi 170 (339)
T PRK15494 99 DTQVILYDTPGIFEP--KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILD------KLRSLNIVPIFLLNKI 170 (339)
T ss_pred CeEEEEEECCCcCCC--cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHH------HHHhcCCCEEEEEEhh
Confidence 457899999999873 334455555543 223335789999998653 222222222 2234577999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhc-cCCceEEEEeccCcccHHHHHHHHHHhcCCCCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE-YSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDA 270 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~-~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~ 270 (284)
|+..+ .+.+.. +.+.. ..+..++|+||++|.|++.|++.|.+.+++||..
T Consensus 171 Dl~~~--~~~~~~---------------------------~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~ 221 (339)
T PRK15494 171 DIESK--YLNDIK---------------------------AFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWL 221 (339)
T ss_pred cCccc--cHHHHH---------------------------HHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCC
Confidence 98532 121111 11122 2356899999999999999999999999999999
Q ss_pred CCCCC
Q 023298 271 DLKIK 275 (284)
Q Consensus 271 ~~~~~ 275 (284)
.|.+-
T Consensus 222 ~~~~~ 226 (339)
T PRK15494 222 YAEDD 226 (339)
T ss_pred CCCCC
Confidence 88766
No 12
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.62 E-value=1.4e-14 Score=136.06 Aligned_cols=196 Identities=12% Similarity=0.066 Sum_probs=112.1
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhh
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC 93 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~ 93 (284)
+--++.++-|.|++ |||||++..|..++...|++|.+|++||+...+.-. =+.+.+ =|+++.-.|+. ++.+
T Consensus 52 ~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~ga---llgd~~----r~~~~~~~~~~-~~r~ 123 (332)
T PRK09435 52 HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGS---ILGDKT----RMERLSRHPNA-FIRP 123 (332)
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchh---hhchHh----HHHhhcCCCCe-EEEe
Confidence 34567889999999 999999999999999999999999999998743210 000111 12222222321 1111
Q ss_pred ---hHh---hhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHH
Q 023298 94 ---MEH---LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI 167 (284)
Q Consensus 94 ---~e~---~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i 167 (284)
... +.....+.+ +.++.. +++++||||+|.-..- .. + .. .+++++++++.. .+++..
T Consensus 124 ~~~~~~l~~~a~~~~~~~-~~~~~~-g~d~viieT~Gv~qs~-----~~--i--~~---~aD~vlvv~~p~---~gd~iq 186 (332)
T PRK09435 124 SPSSGTLGGVARKTRETM-LLCEAA-GYDVILVETVGVGQSE-----TA--V--AG---MVDFFLLLQLPG---AGDELQ 186 (332)
T ss_pred cCCcccccchHHHHHHHH-HHHhcc-CCCEEEEECCCCccch-----hH--H--HH---hCCEEEEEecCC---chHHHH
Confidence 000 111111111 123332 7899999999965311 11 1 21 246677776522 333321
Q ss_pred HHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhc----c-CC-ce
Q 023298 168 SGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE----Y-SM-VS 241 (284)
Q Consensus 168 ~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~----~-~~-~~ 241 (284)
.... . .++...++|+||+|+.+.. ....... .+...+.. . +. ..
T Consensus 187 -~~k~---g--i~E~aDIiVVNKaDl~~~~-~a~~~~~-----------------------el~~~L~l~~~~~~~w~~p 236 (332)
T PRK09435 187 -GIKK---G--IMELADLIVINKADGDNKT-AARRAAA-----------------------EYRSALRLLRPKDPGWQPP 236 (332)
T ss_pred -HHHh---h--hhhhhheEEeehhcccchh-HHHHHHH-----------------------HHHHHHhcccccccCCCCC
Confidence 1111 0 1233459999999997643 2222211 01111111 1 12 57
Q ss_pred EEEEeccCcccHHHHHHHHHHhcC
Q 023298 242 FMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 242 ~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
++++||+++.|+++|++.|.+.++
T Consensus 237 Vi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 237 VLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999865
No 13
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.58 E-value=1.9e-14 Score=124.06 Aligned_cols=114 Identities=21% Similarity=0.434 Sum_probs=74.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
...+.+|||||+.. ....+.+.+. ..++++++||+.....+... ..+......+.|.|+|+||+|+
T Consensus 69 ~~~i~~iDtPG~~~------f~~~~~~~~~---~~D~ailvVda~~g~~~~~~-----~~l~~~~~~~~p~ivvlNK~D~ 134 (188)
T PF00009_consen 69 NRKITLIDTPGHED------FIKEMIRGLR---QADIAILVVDANDGIQPQTE-----EHLKILRELGIPIIVVLNKMDL 134 (188)
T ss_dssp SEEEEEEEESSSHH------HHHHHHHHHT---TSSEEEEEEETTTBSTHHHH-----HHHHHHHHTT-SEEEEEETCTS
T ss_pred ccceeecccccccc------eeecccceec---ccccceeeeecccccccccc-----cccccccccccceEEeeeeccc
Confidence 56899999999654 2233334443 35789999999755333322 1122345788999999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-----CceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-----MVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-----~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.. . ++.+..+ ++.. .+++.++ ...++|+||.+|.|++.|++.|.+.+|
T Consensus 135 ~~-~-~~~~~~~-------------------~~~~---~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 135 IE-K-ELEEIIE-------------------EIKE---KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp SH-H-HHHHHHH-------------------HHHH---HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred hh-h-hHHHHHH-------------------HHHH---HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 73 2 3333321 1111 1222322 468999999999999999999999987
No 14
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.58 E-value=8.4e-14 Score=114.28 Aligned_cols=162 Identities=19% Similarity=0.249 Sum_probs=98.5
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhh
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 98 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~ 98 (284)
..+.++|++ |||||++.++. |+++..++-+++..... ++.
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~------~~~~~~~~~~~~~~~~~------~~~--------------------------- 44 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALV------GQKISIVSPKPQTTRNR------IRG--------------------------- 44 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHh------CCceEeccCCCCceece------EEE---------------------------
Confidence 348999999 99999999986 35665555444432100 000
Q ss_pred hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHH
Q 023298 99 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSA 176 (284)
Q Consensus 99 ~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~ 176 (284)
.....+..++++||||+.+... .....+.+... .....+++++++|+... .+....+.. .
T Consensus 45 ----------~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~------~ 106 (168)
T cd04163 45 ----------IYTDDDAQIIFVDTPGIHKPKK--KLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILE------L 106 (168)
T ss_pred ----------EEEcCCeEEEEEECCCCCcchH--HHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHH------H
Confidence 0000034789999999876322 22222322211 12224689999999865 333333322 2
Q ss_pred HHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHH
Q 023298 177 MVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYV 256 (284)
Q Consensus 177 ~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~L 256 (284)
+.+.+.|.++|+||+|+......+.++. ..+....+...++++|+++++|++.+
T Consensus 107 ~~~~~~~~iiv~nK~Dl~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~s~~~~~~~~~l 160 (168)
T cd04163 107 LKKSKTPVILVLNKIDLVKDKEDLLPLL--------------------------EKLKELGPFAEIFPISALKGENVDEL 160 (168)
T ss_pred HHHhCCCEEEEEEchhccccHHHHHHHH--------------------------HHHHhccCCCceEEEEeccCCChHHH
Confidence 2345789999999999874221333322 11113344678999999999999999
Q ss_pred HHHHHHhc
Q 023298 257 LSQIDNCI 264 (284)
Q Consensus 257 l~~I~~~l 264 (284)
++.|.+.+
T Consensus 161 ~~~l~~~~ 168 (168)
T cd04163 161 LEEIVKYL 168 (168)
T ss_pred HHHHHhhC
Confidence 99997653
No 15
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.56 E-value=1.6e-13 Score=127.42 Aligned_cols=203 Identities=12% Similarity=0.096 Sum_probs=109.0
Q ss_pred cccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhh--hc---Cccc
Q 023298 13 MSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVME--EL---GLGP 86 (284)
Q Consensus 13 ~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~--~~---~lgP 86 (284)
......+..+.|+|++ |||||++..++.++...|++|.+|++||+...+... + +.+-+.+.+.-. .. .+.+
T Consensus 28 ~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~ 104 (300)
T TIGR00750 28 MPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGS--I-LGDRTRMQRLATDPGAFIRSMPT 104 (300)
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhh--h-cccchhhhhcccCCCceeeecCc
Confidence 3455567789999999 999999999999999999999999999988532110 0 001001110000 00 1111
Q ss_pred CchhhhhhHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH
Q 023298 87 NGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 166 (284)
Q Consensus 87 ng~l~~~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~ 166 (284)
.| ...... ....+. .+.++.. ++++|||||||.-. ... ..+.. .+.++++.+.. ...+
T Consensus 105 ~~-~~~~~~---~~~~~~-~~~l~~~-g~D~viidT~G~~~-----~e~----~i~~~---aD~i~vv~~~~---~~~e- 162 (300)
T TIGR00750 105 RG-HLGGLS---QATREL-ILLLDAA-GYDVIIVETVGVGQ-----SEV----DIANM---ADTFVVVTIPG---TGDD- 162 (300)
T ss_pred cc-cccchh---HHHHHH-HHHHHhC-CCCEEEEeCCCCch-----hhh----HHHHh---hceEEEEecCC---ccHH-
Confidence 11 111111 111111 1223333 78999999999432 111 11222 23444444332 1222
Q ss_pred HHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-CC-ceEEE
Q 023298 167 ISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SM-VSFMP 244 (284)
Q Consensus 167 i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-~~-~~~ip 244 (284)
+..... . -.++|.++|+||+|+.... ....... .+...+..+.+.. ++ ..+++
T Consensus 163 l~~~~~---~--l~~~~~ivv~NK~Dl~~~~-~~~~~~~-------------------~~~~~l~~l~~~~~~~~~~v~~ 217 (300)
T TIGR00750 163 LQGIKA---G--LMEIADIYVVNKADGEGAT-NVTIARL-------------------MLALALEEIRRREDGWRPPVLT 217 (300)
T ss_pred HHHHHH---H--HhhhccEEEEEcccccchh-HHHHHHH-------------------HHHHHHhhccccccCCCCCEEE
Confidence 111111 1 1467899999999987543 2111000 0000111111221 22 35899
Q ss_pred EeccCcccHHHHHHHHHHhcC
Q 023298 245 LDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 245 iSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+||++++|++.|++.|.+...
T Consensus 218 iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 218 TSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred EEccCCCCHHHHHHHHHHHHH
Confidence 999999999999999988754
No 16
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.55 E-value=7.8e-14 Score=127.59 Aligned_cols=187 Identities=14% Similarity=0.199 Sum_probs=114.4
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
.+.|||+| +|||||+.++- |+||..+---++.+.- +. .|+
T Consensus 74 ~vavIG~PNvGKStLtN~mi------g~kv~~vS~K~~TTr~---------~i---------lgi--------------- 114 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMI------GQKVSAVSRKVHTTRH---------RI---------LGI--------------- 114 (379)
T ss_pred EEEEEcCCCcchhhhhhHhh------CCccccccccccceee---------ee---------eEE---------------
Confidence 37899999 99999998875 4777666555544321 00 011
Q ss_pred cHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHH----HhcCCCeEEEEEecCCCC---CCHHHHHHHHHH
Q 023298 100 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL----KSRNFNVCAVYLLDSQFI---TDVTKFISGCMA 172 (284)
Q Consensus 100 ~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l----~~~d~~~vil~LiDa~~~---~~~~~~i~~~l~ 172 (284)
+.. ++.|.||.||||.++...++.-.. +...+ .+++.+++++.++|+... .+|. +..+
T Consensus 115 ---------~ts-~eTQlvf~DTPGlvs~~~~r~~~l-~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~-- 179 (379)
T KOG1423|consen 115 ---------ITS-GETQLVFYDTPGLVSKKMHRRHHL-MMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHM-- 179 (379)
T ss_pred ---------Eec-CceEEEEecCCcccccchhhhHHH-HHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHH--
Confidence 111 167999999999998544333222 12212 234556889999999742 2221 1111
Q ss_pred HHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-------------CC
Q 023298 173 SLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-------------SM 239 (284)
Q Consensus 173 ~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-------------~~ 239 (284)
+... ...|-|+|+||+|.++.+..+.+... .| . ++....+...+.+-+.+. .|
T Consensus 180 -l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~----~L----t---~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshf 245 (379)
T KOG1423|consen 180 -LEEY--SKIPSILVMNKIDKLKQKRLLLNLKD----LL----T---NGELAKLKLEVQEKFTDVPSDEKWRTICGWSHF 245 (379)
T ss_pred -HHHH--hcCCceeeccchhcchhhhHHhhhHH----hc----c---ccccchhhhhHHHHhccCCcccccccccCcccc
Confidence 1111 35799999999999875523322221 11 0 011111112222222222 36
Q ss_pred ceEEEEeccCcccHHHHHHHHHHhcCCCCCCCCCCC
Q 023298 240 VSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKIK 275 (284)
Q Consensus 240 ~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~~~~~ 275 (284)
.++++|||++|+|+++|-+.+....|.||+.++.+-
T Consensus 246 e~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i 281 (379)
T KOG1423|consen 246 ERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADI 281 (379)
T ss_pred eeEEEEecccccCHHHHHHHHHhcCCCCCCCCCccc
Confidence 789999999999999999999999999999998654
No 17
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.55 E-value=9.9e-14 Score=128.63 Aligned_cols=167 Identities=20% Similarity=0.303 Sum_probs=122.5
Q ss_pred EECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhcHH
Q 023298 24 VFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 102 (284)
Q Consensus 24 viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~~~ 102 (284)
++|-| +|||||...+++ .-|....+|++ .|.||-+++..
T Consensus 164 LVG~PNaGKSTlls~vS~-------------AkPKIadYpFT------------------TL~PnLGvV~~--------- 203 (369)
T COG0536 164 LVGLPNAGKSTLLSAVSA-------------AKPKIADYPFT------------------TLVPNLGVVRV--------- 203 (369)
T ss_pred cccCCCCcHHHHHHHHhh-------------cCCcccCCccc------------------cccCcccEEEe---------
Confidence 78999 999999999998 55666666553 46688766642
Q ss_pred HHHHHHhhccCCCCEEEEeCCCCcccc-cccchHHHHHHHHHhcCCCeEEEEEecCCCC--CCHHHHHHHHHHHHHHHHh
Q 023298 103 DWLAEELDNYLDDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQ 179 (284)
Q Consensus 103 ~~l~~~l~~~~~~~~viiDtPg~~e~~-~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~--~~~~~~i~~~l~~l~~~~~ 179 (284)
. . +.++|+.|.||.+|.. ....++.+|++++++. -+++|+||.+.. .+|.+-+..+...|..+..
T Consensus 204 -------~-~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt---~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~ 271 (369)
T COG0536 204 -------D-G-GESFVVADIPGLIEGASEGVGLGLRFLRHIERT---RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP 271 (369)
T ss_pred -------c-C-CCcEEEecCcccccccccCCCccHHHHHHHHhh---heeEEEEecCcccCCCHHHHHHHHHHHHHHhhH
Confidence 1 1 5679999999999985 3567789999999874 479999999866 3566666666666666632
Q ss_pred --cCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHH
Q 023298 180 --LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVL 257 (284)
Q Consensus 180 --~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll 257 (284)
.++|.++|+||+|+.....+++.+. ..+.+..+...+.+|||.+++|++.|+
T Consensus 272 ~L~~K~~ivv~NKiD~~~~~e~~~~~~--------------------------~~l~~~~~~~~~~~ISa~t~~g~~~L~ 325 (369)
T COG0536 272 KLAEKPRIVVLNKIDLPLDEEELEELK--------------------------KALAEALGWEVFYLISALTREGLDELL 325 (369)
T ss_pred HhccCceEEEEeccCCCcCHHHHHHHH--------------------------HHHHHhcCCCcceeeehhcccCHHHHH
Confidence 5899999999999655442333332 112233444555559999999999999
Q ss_pred HHHHHhcCCCC
Q 023298 258 SQIDNCIQWGE 268 (284)
Q Consensus 258 ~~I~~~l~~g~ 268 (284)
..+.+.+....
T Consensus 326 ~~~~~~l~~~~ 336 (369)
T COG0536 326 RALAELLEETK 336 (369)
T ss_pred HHHHHHHHHhh
Confidence 99998887765
No 18
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.54 E-value=8e-14 Score=122.68 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=38.3
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
.+.|+|.| |||||+|.|||.+|++.|+||++||+|||++.+
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~ 43 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADST 43 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence 47788999 999999999999999999999999999999754
No 19
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=1.8e-13 Score=128.97 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=80.6
Q ss_pred CCCEEEEeCCCCcccccc-cchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh--cCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ--LELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~-~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~--~~~p~IlVlNK 190 (284)
..+++++||||+++.... ..++..++++++.+ .+++|++|++...+-.. +..+...+..... .++|.++|+||
T Consensus 205 ~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a---~vlI~ViD~s~~~s~e~-~~~~~~EL~~~~~~L~~kp~IIV~NK 280 (335)
T PRK12299 205 YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT---RLLLHLVDIEAVDPVED-YKTIRNELEKYSPELADKPRILVLNK 280 (335)
T ss_pred CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc---CEEEEEEcCCCCCCHHH-HHHHHHHHHHhhhhcccCCeEEEEEC
Confidence 346899999999875432 24566777777653 58999999875432222 3334333333322 47899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
+|+.... +..... . .......+ ..++++||++++|+++|++.|.+.+++..
T Consensus 281 iDL~~~~-~~~~~~----------~---------------~~~~~~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 281 IDLLDEE-EEREKR----------A---------------ALELAALG-GPVFLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred cccCCch-hHHHHH----------H---------------HHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 9986543 221100 0 01112222 57999999999999999999999887643
No 20
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.54 E-value=2.4e-13 Score=127.77 Aligned_cols=119 Identities=19% Similarity=0.319 Sum_probs=79.9
Q ss_pred CCEEEEeCCCCcccccc-cchHHHHHHHHHhcCCCeEEEEEecCCCC--CCHHHHHHHHHHHHHHHHh--cCCCEEEEec
Q 023298 115 DDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQ--LELPHVNILS 189 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~-~~~~~~l~~~l~~~d~~~vil~LiDa~~~--~~~~~~i~~~l~~l~~~~~--~~~p~IlVlN 189 (284)
.++.++||||+++.... ...+..+.++++.+ ++++|++|+... .++-+-+..+...+..+.. .++|.++|+|
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~flrhiera---d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N 281 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERT---RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLN 281 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHHHHHHHhh---CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence 57899999999875432 34566777877653 579999998754 2344444444444443322 4789999999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+|+.... ...++.+ ++.+.++ ..++++||++++|+++|++.|.+.+
T Consensus 282 K~DL~~~~-~~~~~~~--------------------------~l~~~~~-~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 282 KIDLLDEE-ELAELLK--------------------------ELKKALG-KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred CccCCChH-HHHHHHH--------------------------HHHHHcC-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 99986543 2222110 1112222 5799999999999999999998765
No 21
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.53 E-value=1.4e-13 Score=124.99 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=37.3
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
|.|.|.| |||||+|.|||.+|+++|+||++||+|||++..
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~~~~ 43 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKHDST 43 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 6677999 999999999999999999999999999999854
No 22
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.53 E-value=7e-13 Score=110.81 Aligned_cols=119 Identities=21% Similarity=0.289 Sum_probs=73.3
Q ss_pred CEEEEeCCCCcccccc-cchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~-~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~--~~~~p~IlVlNK~D 192 (284)
++.++||||+.+.... +.....+.+.+.. .+++++++|+....++...+..+...+.... ..++|.++|+||+|
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~---~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~D 125 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRFLRHIER---TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKID 125 (170)
T ss_pred eEEEEecCcccCcccccCCchHHHHHHHHh---CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchh
Confidence 7899999998653322 1223334444433 4689999999754222333444443333222 13689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+..+. ...++. .+.........++++||+++.|++++++.|.+.+
T Consensus 126 l~~~~-~~~~~~--------------------------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 126 LLDEE-ELFELL--------------------------KELLKELWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred cCCch-hhHHHH--------------------------HHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 87644 332222 1111222236789999999999999999887653
No 23
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.52 E-value=1e-13 Score=125.88 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=37.1
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
+.|.|.| |||||+|.|||.+|++.|+||++||+|||++.+
T Consensus 3 i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~~~~ 43 (268)
T TIGR01281 3 LAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKHDST 43 (268)
T ss_pred EEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcccccc
Confidence 5566999 999999999999999999999999999999855
No 24
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.51 E-value=1.3e-13 Score=127.44 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=38.8
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFD 62 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~ 62 (284)
+.|.|.| |||||+|.|||.+|++.|+||++||+|||++.+.
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~t~ 44 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDSTF 44 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcccc
Confidence 7899999 9999999999999999999999999999998654
No 25
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.51 E-value=8.2e-13 Score=115.41 Aligned_cols=113 Identities=20% Similarity=0.268 Sum_probs=69.1
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCC-EEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELP-HVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p-~IlVlNK~ 191 (284)
+.+++++||||+.. ....+...+ ...+++++++|+...-.+ ...+.. .+.+.++| .|+|+||+
T Consensus 64 ~~~i~~iDtPG~~~------~~~~~~~~~---~~~D~~ilVvda~~g~~~~~~~~~~------~~~~~~~~~iIvviNK~ 128 (195)
T cd01884 64 NRHYAHVDCPGHAD------YIKNMITGA---AQMDGAILVVSATDGPMPQTREHLL------LARQVGVPYIVVFLNKA 128 (195)
T ss_pred CeEEEEEECcCHHH------HHHHHHHHh---hhCCEEEEEEECCCCCcHHHHHHHH------HHHHcCCCcEEEEEeCC
Confidence 56899999999643 122233333 335789999999754222 222222 23356787 67999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC----CceEEEEeccCcccH----------HHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKESSI----------RYVL 257 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~----~~~~ipiSa~~~~~l----------~~Ll 257 (284)
|++.++ +..+.. ...+.+.+...+ ...|+|+||.+|.|. ..|+
T Consensus 129 D~~~~~-~~~~~~----------------------~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~ 185 (195)
T cd01884 129 DMVDDE-ELLELV----------------------EMEVRELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELL 185 (195)
T ss_pred CCCCcH-HHHHHH----------------------HHHHHHHHHHhcccccCCeEEEeeCccccCCCCCCcchhcHhHHH
Confidence 997533 322211 112233344443 378999999999974 5777
Q ss_pred HHHHHhc
Q 023298 258 SQIDNCI 264 (284)
Q Consensus 258 ~~I~~~l 264 (284)
++|+...
T Consensus 186 ~~l~~~~ 192 (195)
T cd01884 186 DALDSYI 192 (195)
T ss_pred HHHHhCC
Confidence 7777654
No 26
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.50 E-value=4.3e-13 Score=129.83 Aligned_cols=166 Identities=20% Similarity=0.298 Sum_probs=104.9
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
-|.++|.+ |||||+...|+. ..|.....+++ .+.||-+.+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~-------------ak~kIa~ypfT------------------Tl~PnlG~v~------- 201 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSN-------------AKPKIANYHFT------------------TLVPNLGVVE------- 201 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHc-------------CCCccccCCcc------------------eeceEEEEEE-------
Confidence 48899999 999999999986 22433332221 1224422211
Q ss_pred cHHHHHHHHhhccCCCCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCCCC--CCHHHHHHHHHHHHHH
Q 023298 100 NLDDWLAEELDNYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSA 176 (284)
Q Consensus 100 ~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~~~--~~~~~~i~~~l~~l~~ 176 (284)
+.. +.+++++||||+++... ...++..++++++. ..+++|++|++.. .++.+-+..+...+..
T Consensus 202 ---------~~~--~~~~~laD~PGliega~~~~gLg~~fLrhier---~~llI~VID~s~~~~~dp~e~~~~i~~EL~~ 267 (424)
T PRK12297 202 ---------TDD--GRSFVMADIPGLIEGASEGVGLGHQFLRHIER---TRVIVHVIDMSGSEGRDPIEDYEKINKELKL 267 (424)
T ss_pred ---------EeC--CceEEEEECCCCcccccccchHHHHHHHHHhh---CCEEEEEEeCCccccCChHHHHHHHHHHHhh
Confidence 110 35799999999987432 23455667777765 3689999999754 2343333333333333
Q ss_pred HHh--cCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHH
Q 023298 177 MVQ--LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIR 254 (284)
Q Consensus 177 ~~~--~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~ 254 (284)
... .++|.++|+||+|+......+..+ .+.++ ..++|+||++++|++
T Consensus 268 y~~~L~~kP~IVV~NK~DL~~~~e~l~~l------------------------------~~~l~-~~i~~iSA~tgeGI~ 316 (424)
T PRK12297 268 YNPRLLERPQIVVANKMDLPEAEENLEEF------------------------------KEKLG-PKVFPISALTGQGLD 316 (424)
T ss_pred hchhccCCcEEEEEeCCCCcCCHHHHHHH------------------------------HHHhC-CcEEEEeCCCCCCHH
Confidence 321 478999999999973222011111 12222 579999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 023298 255 YVLSQIDNCIQWGED 269 (284)
Q Consensus 255 ~Ll~~I~~~l~~g~d 269 (284)
+|++.|.+.+...+.
T Consensus 317 eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 317 ELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999999988877654
No 27
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.49 E-value=2.6e-13 Score=122.86 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=38.6
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
+.+.|+|.| |||||+|.|||.+|++.|+||++||+|||++.+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~~ 44 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADST 44 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCch
Confidence 457777999 999999999999999999999999999999865
No 28
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.49 E-value=2.8e-13 Score=123.16 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=38.7
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFD 62 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~ 62 (284)
+++.|.|.| |||||+|.|||.+|++.|+||++||+|||++.+.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq~~~t~ 46 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPKHDSTF 46 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCCcchhh
Confidence 346677999 9999999999999999999999999999998653
No 29
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.49 E-value=2.7e-13 Score=114.46 Aligned_cols=152 Identities=22% Similarity=0.281 Sum_probs=91.4
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 100 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~ 100 (284)
|.++|.| |||||+...|.. +++.+=|- |+.+- +... +
T Consensus 3 ialvG~PNvGKStLfN~Ltg------~~~~v~n~-pG~Tv-------~~~~-----------g----------------- 40 (156)
T PF02421_consen 3 IALVGNPNVGKSTLFNALTG------AKQKVGNW-PGTTV-------EKKE-----------G----------------- 40 (156)
T ss_dssp EEEEESTTSSHHHHHHHHHT------TSEEEEES-TTSSS-------EEEE-----------E-----------------
T ss_pred EEEECCCCCCHHHHHHHHHC------CCceecCC-CCCCe-------eeee-----------E-----------------
Confidence 7899999 999999998886 45555443 44431 1100 0
Q ss_pred HHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 023298 101 LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 179 (284)
Q Consensus 101 ~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~ 179 (284)
.+. +.+.++.++|+||....... ..-+++.. .+.. ...+++++++|+....+ +. .-+.++..
T Consensus 41 -------~~~-~~~~~~~lvDlPG~ysl~~~-s~ee~v~~~~l~~-~~~D~ii~VvDa~~l~r-~l------~l~~ql~e 103 (156)
T PF02421_consen 41 -------IFK-LGDQQVELVDLPGIYSLSSK-SEEERVARDYLLS-EKPDLIIVVVDATNLER-NL------YLTLQLLE 103 (156)
T ss_dssp -------EEE-ETTEEEEEEE----SSSSSS-SHHHHHHHHHHHH-TSSSEEEEEEEGGGHHH-HH------HHHHHHHH
T ss_pred -------EEE-ecCceEEEEECCCcccCCCC-CcHHHHHHHHHhh-cCCCEEEEECCCCCHHH-HH------HHHHHHHH
Confidence 011 11458999999998764332 22344433 3432 33678999999975421 11 22345567
Q ss_pred cCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHH
Q 023298 180 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 259 (284)
Q Consensus 180 ~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~ 259 (284)
+++|+++|+||+|...++ .+.- +.+ .|+ + .. ...++|+||.+++|+++|.++
T Consensus 104 ~g~P~vvvlN~~D~a~~~-g~~i----d~~---------------~Ls----~---~L-g~pvi~~sa~~~~g~~~L~~~ 155 (156)
T PF02421_consen 104 LGIPVVVVLNKMDEAERK-GIEI----DAE---------------KLS----E---RL-GVPVIPVSARTGEGIDELKDA 155 (156)
T ss_dssp TTSSEEEEEETHHHHHHT-TEEE-----HH---------------HHH----H---HH-TS-EEEEBTTTTBTHHHHHHH
T ss_pred cCCCEEEEEeCHHHHHHc-CCEE----CHH---------------HHH----H---Hh-CCCEEEEEeCCCcCHHHHHhh
Confidence 899999999999997654 2211 101 111 1 11 368999999999999999987
Q ss_pred H
Q 023298 260 I 260 (284)
Q Consensus 260 I 260 (284)
|
T Consensus 156 I 156 (156)
T PF02421_consen 156 I 156 (156)
T ss_dssp H
T ss_pred C
Confidence 6
No 30
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.48 E-value=5.9e-13 Score=130.82 Aligned_cols=123 Identities=18% Similarity=0.265 Sum_probs=78.0
Q ss_pred CCCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCCCCC---CHHHHHHHHHHHHHHHH-----------
Q 023298 114 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT---DVTKFISGCMASLSAMV----------- 178 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~---~~~~~i~~~l~~l~~~~----------- 178 (284)
+.+++++||||+++... ...++..++++++. .++++|++|++... +|-.-+..+...+..+.
T Consensus 205 ~~~f~laDtPGliegas~g~gLg~~fLrhier---advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~ 281 (500)
T PRK12296 205 DTRFTVADVPGLIPGASEGKGLGLDFLRHIER---CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGD 281 (500)
T ss_pred CeEEEEEECCCCccccchhhHHHHHHHHHHHh---cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhh
Confidence 45799999999986432 22344556666654 46899999997532 23222222222232222
Q ss_pred hcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHH
Q 023298 179 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 258 (284)
Q Consensus 179 ~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~ 258 (284)
..++|.|+|+||+|+.... ++.+.+ .+.+...+ ..++++||++++|+++|+.
T Consensus 282 l~~kP~IVVlNKiDL~da~-el~e~l--------------------------~~~l~~~g-~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 282 LAERPRLVVLNKIDVPDAR-ELAEFV--------------------------RPELEARG-WPVFEVSAASREGLRELSF 333 (500)
T ss_pred hcCCCEEEEEECccchhhH-HHHHHH--------------------------HHHHHHcC-CeEEEEECCCCCCHHHHHH
Confidence 2478999999999986433 222221 11122233 5799999999999999999
Q ss_pred HHHHhcCCC
Q 023298 259 QIDNCIQWG 267 (284)
Q Consensus 259 ~I~~~l~~g 267 (284)
.|.+.+..-
T Consensus 334 ~L~ell~~~ 342 (500)
T PRK12296 334 ALAELVEEA 342 (500)
T ss_pred HHHHHHHhh
Confidence 988877553
No 31
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.47 E-value=9.1e-13 Score=117.52 Aligned_cols=210 Identities=14% Similarity=0.074 Sum_probs=105.7
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 100 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~ 100 (284)
++|+|.. +||||++..+.......|+.....++|-...+..-... .++.. +.+|+...|.++..-... .
T Consensus 2 v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t------~~~~~--~~~g~~~~~~~~~~~~~~--~ 71 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRT------SSVSN--EILGFDSDGEVVNYPDNH--L 71 (224)
T ss_pred EEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCch------hhhhh--hhcccCCCCceecCCCCc--c
Confidence 6789999 99999999999865556666666666644332211000 01111 112222222221100000 0
Q ss_pred HHHHH-HHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHH
Q 023298 101 LDDWL-AEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMV 178 (284)
Q Consensus 101 ~~~~l-~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~ 178 (284)
.+- .+..+ ..++.+.+|||||+.. ..+.+...+.. ...+++++++|+.....+ +..+. ..+.
T Consensus 72 --~~~~~~~~~-~~~~~i~liDtpG~~~------~~~~~~~~~~~-~~~D~~llVvda~~g~~~~d~~~l------~~l~ 135 (224)
T cd04165 72 --SESDIEICE-KSSKLVTFIDLAGHER------YLKTTLFGLTG-YAPDYAMLVVAANAGIIGMTKEHL------GLAL 135 (224)
T ss_pred --ccccceeee-eCCcEEEEEECCCcHH------HHHHHHHhhcc-cCCCEEEEEEECCCCCcHHHHHHH------HHHH
Confidence 000 01112 1256789999999532 22333444421 235688999998754332 22222 2334
Q ss_pred hcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHH----HHHHHH--HHHHHhccCCceEEEEeccCccc
Q 023298 179 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQF----AKLNKS--LIELVDEYSMVSFMPLDLRKESS 252 (284)
Q Consensus 179 ~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~----~~l~~~--i~~~l~~~~~~~~ipiSa~~~~~ 252 (284)
..++|+++|+||+|++++. .+.+.++ .+.+.+....-.+. +..... .+.-........++++|+.+|+|
T Consensus 136 ~~~ip~ivvvNK~D~~~~~-~~~~~~~----~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~G 210 (224)
T cd04165 136 ALNIPVFVVVTKIDLAPAN-ILQETLK----DLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEG 210 (224)
T ss_pred HcCCCEEEEEECccccCHH-HHHHHHH----HHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccC
Confidence 6789999999999987643 3333221 11111110000000 000000 00001112235899999999999
Q ss_pred HHHHHHHHHH
Q 023298 253 IRYVLSQIDN 262 (284)
Q Consensus 253 l~~Ll~~I~~ 262 (284)
++.|.+.+..
T Consensus 211 i~~L~~~L~~ 220 (224)
T cd04165 211 LDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHh
Confidence 9999887753
No 32
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.46 E-value=9.6e-13 Score=127.01 Aligned_cols=109 Identities=25% Similarity=0.265 Sum_probs=66.3
Q ss_pred ceEEEEEC-CC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC---CCCcccc------ccc-------cccHHHHhh
Q 023298 19 LVIKCVFS-PP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF---DYPVAMD------IRE-------LISLEDVME 80 (284)
Q Consensus 19 ~~~~~viG-~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~---~~~~~~d------ir~-------~i~~~~vm~ 80 (284)
+.++.|.. .| |||||+|.|||.+|+..|+||++||+|||++.+ .+.++.+ +.+ -.++.+++.
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~~i~ 200 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIR 200 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCCCCHHHHcCCCccccccccccHHHHHhccccCCCHHHhee
Confidence 35444544 37 999999999999999999999999999999843 2222211 111 122333332
Q ss_pred -----hcCcccCchhhhhhHhhhh-------cH----HHHHHHHhhccC-CCCEEEEeCCCCcc
Q 023298 81 -----ELGLGPNGGLIYCMEHLED-------NL----DDWLAEELDNYL-DDDYLVFDCPGQIE 127 (284)
Q Consensus 81 -----~~~lgPng~l~~~~e~~~~-------~~----~~~l~~~l~~~~-~~~~viiDtPg~~e 127 (284)
+..+.|++.-+..++.... .. ...|++.|+... +++||||||||...
T Consensus 201 ~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~~~yD~IiIDtpP~l~ 264 (405)
T PRK13869 201 PTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVADDYDVVVIDCPPQLG 264 (405)
T ss_pred ccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhhccCCEEEEECCCchh
Confidence 3445665543433332110 00 023555665443 68999999999765
No 33
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.45 E-value=1.2e-12 Score=125.55 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=65.2
Q ss_pred ceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEec-CcCCCCCC---CCcccccccccc-----------HHHHh--
Q 023298 19 LVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNL-DPAAENFD---YPVAMDIRELIS-----------LEDVM-- 79 (284)
Q Consensus 19 ~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdL-DPq~~~~~---~~~~~dir~~i~-----------~~~vm-- 79 (284)
+.++.|... | |||||+|.|||.+|+..|+||++||+ |||++.+. +.++.++.+.-+ ..+++
T Consensus 106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ~nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~~i~~ 185 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQGTASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAIKP 185 (387)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCCCCcccccCcCccccccccccHHHHHhCCCcchHhheec
Confidence 344444444 6 99999999999999999999999996 99999643 322222211111 11221
Q ss_pred ---hhcCcccCchhhhhhHhhhh----------cHHHHHHHHhhccC-CCCEEEEeCCCCcc
Q 023298 80 ---EELGLGPNGGLIYCMEHLED----------NLDDWLAEELDNYL-DDDYLVFDCPGQIE 127 (284)
Q Consensus 80 ---~~~~lgPng~l~~~~e~~~~----------~~~~~l~~~l~~~~-~~~~viiDtPg~~e 127 (284)
.+.++.|.+..+...+.... .....|++.++... +++||||||||...
T Consensus 186 t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~~~YD~IlID~pPslg 247 (387)
T PHA02519 186 TCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVWDNYDIIVIDSAPNLG 247 (387)
T ss_pred CCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhhccCCEEEEECCCCcc
Confidence 22344565443332221110 11124555555443 68999999999775
No 34
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.45 E-value=1.1e-12 Score=118.41 Aligned_cols=109 Identities=22% Similarity=0.221 Sum_probs=65.3
Q ss_pred ceEEEEECC-C-CcHHHHHHHHHHHHH-hcCCceEEEecCcCCCCCCCCc---c--ccccccccHHH----------Hhh
Q 023298 19 LVIKCVFSP-P-PNQSTYCSSLYRHCE-TVRRTMHIVNLDPAAENFDYPV---A--MDIRELISLED----------VME 80 (284)
Q Consensus 19 ~~~~~viG~-~-sGKTT~~~~La~~l~-~~g~~v~iVdLDPq~~~~~~~~---~--~dir~~i~~~~----------vm~ 80 (284)
+.++.|+.. | |||||++.|||.+|+ ..|+||++||+|||++.+.|-. . ..+.++..... .+.
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVVIE 81 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchhhHhcCCCcccchhHHHHHhcccccccchhcccCCC
Confidence 455556665 6 999999999999999 5669999999999988654321 1 11111111000 234
Q ss_pred hcCcccCchhhh-h--hHhhhhcHHHHHHHHhhccC-CCCEEEEeCCCCcc
Q 023298 81 ELGLGPNGGLIY-C--MEHLEDNLDDWLAEELDNYL-DDDYLVFDCPGQIE 127 (284)
Q Consensus 81 ~~~lgPng~l~~-~--~e~~~~~~~~~l~~~l~~~~-~~~~viiDtPg~~e 127 (284)
++++.|++.-.. . .+......+..+++.++... +++||+|||||...
T Consensus 82 ~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~yD~iiID~pp~l~ 132 (259)
T COG1192 82 GLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVKDDYDYIIIDTPPSLG 132 (259)
T ss_pred CceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhccCCCEEEECCCCchh
Confidence 456777655443 1 11111222233444443222 68999999999764
No 35
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.44 E-value=2.8e-12 Score=123.89 Aligned_cols=115 Identities=10% Similarity=0.098 Sum_probs=76.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+..+.++||||+.. ......+.+..... .....++++|++|+.....+ +..+..++ .+.++|+++|+||+
T Consensus 46 ~~~~~liDTpG~~~--~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l------~~~~~piilVvNK~ 117 (429)
T TIGR03594 46 GREFILIDTGGIEE--DDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWL------RKSGKPVILVANKI 117 (429)
T ss_pred CeEEEEEECCCCCC--cchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHH------HHhCCCEEEEEECc
Confidence 44689999999754 11222233333221 23335789999999764333 33344333 35689999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+........ -+...++..++++||.+|.|+.+|++.+.+.++..
T Consensus 118 D~~~~~~~~~-------------------------------~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 118 DGKKEDAVAA-------------------------------EFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred cCCcccccHH-------------------------------HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcc
Confidence 9865331100 01345677899999999999999999999998764
No 36
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.44 E-value=1.6e-12 Score=116.10 Aligned_cols=153 Identities=14% Similarity=0.226 Sum_probs=80.4
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCC----Cc-cccccccc----cHHHHhh----hcCcccC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY----PV-AMDIRELI----SLEDVME----ELGLGPN 87 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~----~~-~~dir~~i----~~~~vm~----~~~lgPn 87 (284)
.++-+.| |||||++.|||..|++.|++|++||+|||.....+ ++ ..++.+.+ .+++.+. +..+.|.
T Consensus 4 ~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~ 83 (251)
T TIGR01969 4 TIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVKVIPA 83 (251)
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEEEEeC
Confidence 3444557 99999999999999999999999999998643322 11 11122211 1222211 1222343
Q ss_pred chhhhhhHhhhhcHHHHHHHHhhccC-CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH
Q 023298 88 GGLIYCMEHLEDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF 166 (284)
Q Consensus 88 g~l~~~~e~~~~~~~~~l~~~l~~~~-~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~ 166 (284)
+.-....+. ... +.+.+.+.... +++||||||||..... ....+..+ +.++.++++...+ -.
T Consensus 84 ~~~~~~~~~--~~~-~~l~~~l~~l~~~yD~VIiD~p~~~~~~--------~~~~l~~a---d~vliv~~~~~~s-~~-- 146 (251)
T TIGR01969 84 GVSLEGLRK--ADP-DKLEDVLKEIIDDTDFLLIDAPAGLERD--------AVTALAAA---DELLLVVNPEISS-IT-- 146 (251)
T ss_pred CCCHHHHhh--cCH-HHHHHHHHHHHhhCCEEEEeCCCccCHH--------HHHHHHhC---CeEEEEECCCCch-HH--
Confidence 321111110 011 22333333221 6899999999976521 22334333 4566667664322 11
Q ss_pred HHHHHHHHHHHHhcCCC-EEEEecCCcc
Q 023298 167 ISGCMASLSAMVQLELP-HVNILSKMDL 193 (284)
Q Consensus 167 i~~~l~~l~~~~~~~~p-~IlVlNK~Dl 193 (284)
..+.......+.+.+ ..+|+|+++.
T Consensus 147 --~~~~~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 147 --DALKTKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred --HHHHHHHHHHhcCCceEEEEEECCCc
Confidence 111222222344555 4689999875
No 37
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.44 E-value=1e-12 Score=109.12 Aligned_cols=101 Identities=16% Similarity=0.262 Sum_probs=67.0
Q ss_pred EEEeCCCCcccccccchHHHHHHHHH--hcCCCeEEEEEecCCCC--CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 118 LVFDCPGQIELFTHVPVLRNFVDHLK--SRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 118 viiDtPg~~e~~~~~~~~~~l~~~l~--~~d~~~vil~LiDa~~~--~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.+|||||-. ..+ +.+.++|. +.+ +++|+++.|+... .-|..|.. -.++|+|-|++|+|+
T Consensus 39 ~~IDTPGEy--iE~----~~~y~aLi~ta~d-ad~V~ll~dat~~~~~~pP~fa~----------~f~~pvIGVITK~Dl 101 (143)
T PF10662_consen 39 NTIDTPGEY--IEN----PRFYHALIVTAQD-ADVVLLLQDATEPRSVFPPGFAS----------MFNKPVIGVITKIDL 101 (143)
T ss_pred cEEECChhh--eeC----HHHHHHHHHHHhh-CCEEEEEecCCCCCccCCchhhc----------ccCCCEEEEEECccC
Confidence 459999932 122 23334432 223 4689999999864 23455432 246899999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
.++..+++.- .+.+...|..+++++|+.+|+|+++|.+.+.+
T Consensus 102 ~~~~~~i~~a---------------------------~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 102 PSDDANIERA---------------------------KKWLKNAGVKEIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred ccchhhHHHH---------------------------HHHHHHcCCCCeEEEECCCCcCHHHHHHHHhC
Confidence 7433133221 23445667788999999999999999988753
No 38
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.44 E-value=3.3e-12 Score=110.29 Aligned_cols=118 Identities=17% Similarity=0.251 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.++||||+... ...+.... ...+.+++++|+....+.... ..+ . .....+.|.++|+||+|+
T Consensus 67 ~~~~~i~DtpG~~~~------~~~~~~~~---~~~d~vi~VvD~~~~~~~~~~-~~~-~---~~~~~~~~~iiv~NK~Dl 132 (192)
T cd01889 67 NLQITLVDCPGHASL------IRTIIGGA---QIIDLMLLVVDATKGIQTQTA-ECL-V---IGEILCKKLIVVLNKIDL 132 (192)
T ss_pred CceEEEEECCCcHHH------HHHHHHHH---hhCCEEEEEEECCCCccHHHH-HHH-H---HHHHcCCCEEEEEECccc
Confidence 568999999997431 12222222 224689999999754322221 001 1 112347899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.... ......+ ++...+...+.++ ....++|+||++|+|+++|+..+...++
T Consensus 133 ~~~~-~~~~~~~-------------------~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 133 IPEE-ERERKIE-------------------KMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCHH-HHHHHHH-------------------HHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 7533 2221111 1111112223222 3468999999999999999999988765
No 39
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.44 E-value=2.1e-12 Score=117.90 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=38.8
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY 63 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~ 63 (284)
++.|.|.| |||||++.|||..|++.|+||++||+|||++.+.+
T Consensus 3 ~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~ 46 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRM 46 (273)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchh
Confidence 45566999 99999999999999999999999999999997654
No 40
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.43 E-value=3.9e-12 Score=107.60 Aligned_cols=128 Identities=17% Similarity=0.134 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.+++++||||+... .......+.. .+++++++|+......... .. +......++|.++|+||+|+
T Consensus 61 ~~~~~liDtpG~~~~------~~~~~~~~~~---~d~~i~v~d~~~~~~~~~~--~~---~~~~~~~~~~i~iv~nK~D~ 126 (189)
T cd00881 61 DRRVNFIDTPGHEDF------SSEVIRGLSV---SDGAILVVDANEGVQPQTR--EH---LRIAREGGLPIIVAINKIDR 126 (189)
T ss_pred CEEEEEEeCCCcHHH------HHHHHHHHHh---cCEEEEEEECCCCCcHHHH--HH---HHHHHHCCCCeEEEEECCCC
Confidence 447899999997541 1112223333 4678999998754322211 11 11223368999999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
.... ++....+ .+.+.++... ..+.+ ...........++|+||++|.|+++++..+...+|.
T Consensus 127 ~~~~-~~~~~~~----~~~~~~~~~~-~~~~~-----~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 127 VGEE-DLEEVLR----EIKELLGLIG-FISTK-----EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred cchh-cHHHHHH----HHHHHHcccc-ccchh-----hhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 7533 2222211 1111111000 00000 001112235789999999999999999999998863
No 41
>PRK09866 hypothetical protein; Provisional
Probab=99.43 E-value=7.4e-12 Score=124.97 Aligned_cols=118 Identities=11% Similarity=0.126 Sum_probs=76.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcC--CCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLE--LPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~--~p~IlVlNK 190 (284)
..|+||+||||.++.. .....+.|.+.+.. +++|+|++|+... ...+..+... +.+.+ .|+++|+||
T Consensus 229 ~~QIIFVDTPGIhk~~-~~~L~k~M~eqL~e---ADvVLFVVDat~~~s~~DeeIlk~------Lkk~~K~~PVILVVNK 298 (741)
T PRK09866 229 PGQLTLLDTPGPNEAG-QPHLQKMLNQQLAR---ASAVLAVLDYTQLKSISDEEVREA------ILAVGQSVPLYVLVNK 298 (741)
T ss_pred cCCEEEEECCCCCCcc-chHHHHHHHHHHhh---CCEEEEEEeCCCCCChhHHHHHHH------HHhcCCCCCEEEEEEc
Confidence 4799999999988622 12245566776654 4689999999864 4444444333 23455 499999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHH--hccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV--DEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l--~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+|+.++.....+.+ .. .+...+ ....+.+++||||++|.|++.|++.|.+.
T Consensus 299 IDl~dreeddkE~L-------le---------------~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 299 FDQQDRNSDDADQV-------RA---------------LISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred ccCCCcccchHHHH-------HH---------------HHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 99864221111111 00 011111 13356899999999999999999999874
No 42
>CHL00175 minD septum-site determining protein; Validated
Probab=99.43 E-value=4.6e-12 Score=115.93 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=34.5
Q ss_pred eEEEEEC-CC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 20 VIKCVFS-PP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 20 ~~~~viG-~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
+++.|+| .| |||||+|.|||.+|++.|++|++||+|||..
T Consensus 16 ~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~ 57 (281)
T CHL00175 16 RIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLR 57 (281)
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 3455555 57 9999999999999999999999999999854
No 43
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.43 E-value=3.3e-13 Score=123.58 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=39.7
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY 63 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~ 63 (284)
+.+.++|.| |||||+|.|||..|++.|+||++||+|||++.+.+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n~t~~ 46 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKADCTRN 46 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCccccccc
Confidence 457777999 99999999999999999999999999999986543
No 44
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.42 E-value=4.9e-12 Score=103.67 Aligned_cols=111 Identities=11% Similarity=0.129 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHH-HhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l-~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+.+... .....+.+.. ......+++++++|+... ......+.. .+.+.+.|+++|+||+
T Consensus 44 ~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~------~~~~~~~piiiv~nK~ 115 (157)
T cd01894 44 GREFILIDTGGIEPDDE--GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAK------YLRKSKKPVILVVNKV 115 (157)
T ss_pred CeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHH------HHHhcCCCEEEEEECc
Confidence 45789999999876322 2233333222 111224689999998643 222222222 2335679999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
|+.... .. . +.+...+...++++|++++.|++++++.|.+.
T Consensus 116 D~~~~~-~~---~---------------------------~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 116 DNIKEE-DE---A---------------------------AEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ccCChH-HH---H---------------------------HHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 987543 11 0 01123344578999999999999999998764
No 45
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.42 E-value=5e-12 Score=121.42 Aligned_cols=109 Identities=14% Similarity=0.102 Sum_probs=65.5
Q ss_pred ceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEec-CcCCCCCCC---Ccccccc--c----cc-----cHHHHh--
Q 023298 19 LVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNL-DPAAENFDY---PVAMDIR--E----LI-----SLEDVM-- 79 (284)
Q Consensus 19 ~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdL-DPq~~~~~~---~~~~dir--~----~i-----~~~~vm-- 79 (284)
+.++.|... | |||||+|.|||.+|+..|+||++||+ |||++.+.+ .++.++. + .+ ...+++
T Consensus 106 ~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~ 185 (388)
T PRK13705 106 PPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQGTASMYHGWVPDLHIHAEDTLLPFYLGEKDDATYAIKP 185 (388)
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCCchhhhcCcCccccccccccHHHHHhcCCCchhhheec
Confidence 444444444 6 99999999999999999999999996 999986432 2221111 0 00 111111
Q ss_pred ---hhcCcccCchhhhhhHhh-hh---------cHHHHHHHHhhccC-CCCEEEEeCCCCcc
Q 023298 80 ---EELGLGPNGGLIYCMEHL-ED---------NLDDWLAEELDNYL-DDDYLVFDCPGQIE 127 (284)
Q Consensus 80 ---~~~~lgPng~l~~~~e~~-~~---------~~~~~l~~~l~~~~-~~~~viiDtPg~~e 127 (284)
.+..+.|.+..+...+.. .. +....|++.++... +++||||||||...
T Consensus 186 t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~~~YD~IiIDtpP~l~ 247 (388)
T PRK13705 186 TCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAHDYDVIVIDSAPNLG 247 (388)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhhccCCEEEEECCCchh
Confidence 234456655444333321 11 11234556665543 68999999999765
No 46
>PHA02518 ParA-like protein; Provisional
Probab=99.42 E-value=3e-12 Score=111.42 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=37.3
Q ss_pred EEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCC
Q 023298 22 KCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY 63 (284)
Q Consensus 22 ~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~ 63 (284)
+.|.+. | |||||+|.|||.+|++.|++|++||+|||++...|
T Consensus 3 i~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~ 46 (211)
T PHA02518 3 IAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDW 46 (211)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHH
Confidence 555655 6 99999999999999999999999999999987655
No 47
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.42 E-value=2.3e-12 Score=115.47 Aligned_cols=43 Identities=9% Similarity=0.028 Sum_probs=37.2
Q ss_pred EEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCC
Q 023298 21 IKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY 63 (284)
Q Consensus 21 ~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~ 63 (284)
++.|.+. | |||||++.|||.+|++.|++|++||+|||++...|
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~~w 47 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRW 47 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHH
Confidence 4555554 6 99999999999999999999999999999996555
No 48
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.41 E-value=2.7e-12 Score=114.55 Aligned_cols=158 Identities=12% Similarity=0.142 Sum_probs=83.1
Q ss_pred EEEEEC-CC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC---CCCc--cccccccc----cHHHHh----hhcCcc
Q 023298 21 IKCVFS-PP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF---DYPV--AMDIRELI----SLEDVM----EELGLG 85 (284)
Q Consensus 21 ~~~viG-~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~---~~~~--~~dir~~i----~~~~vm----~~~~lg 85 (284)
++.|.+ .| +||||++.|||..|++.|+||++||+|||++.. ..+. ...+.+.+ .+.+++ .+..+.
T Consensus 3 iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~i 82 (246)
T TIGR03371 3 VIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQNLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDGVLFL 82 (246)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcchHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCCeEEe
Confidence 456666 57 999999999999999999999999999998621 1111 11111111 122222 123344
Q ss_pred cCchhhhh-hHhhhhcHHHHHHHHhhccC--CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC
Q 023298 86 PNGGLIYC-MEHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD 162 (284)
Q Consensus 86 Png~l~~~-~e~~~~~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~ 162 (284)
|.|..... .+.+.....+++++.++... .++||+|||||..... ....+..+ +.++..+...
T Consensus 83 p~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~~~--------~~~~l~~a---d~vii~~~~~---- 147 (246)
T TIGR03371 83 PFGDLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDVPRGPSPI--------TRQALAAA---DLVLVVVNAD---- 147 (246)
T ss_pred cCCCCcHHHHHHHhhcCHHHHHHHHHhcccCCCCEEEEECCCCchHH--------HHHHHHhC---CeEEEEeCCC----
Confidence 54432211 11111111245555555442 2489999999955421 22334443 4455555552
Q ss_pred HHHHHHHHHHHHHHHHh---cCCCEEEEecCCccc
Q 023298 163 VTKFISGCMASLSAMVQ---LELPHVNILSKMDLV 194 (284)
Q Consensus 163 ~~~~i~~~l~~l~~~~~---~~~p~IlVlNK~Dll 194 (284)
+..+ ......+..+.+ ...+.-+|+|+++..
T Consensus 148 ~~s~-~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 148 AACY-ATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred HHHH-HHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 2221 111101111111 234567899999853
No 49
>PRK10037 cell division protein; Provisional
Probab=99.41 E-value=3.4e-12 Score=115.16 Aligned_cols=40 Identities=8% Similarity=0.043 Sum_probs=35.0
Q ss_pred EEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 21 IKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 21 ~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
++.|.+. | |||||+|.|||.+|+++|+||++||+|||++.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q~~~ 44 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDNLL 44 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChhhhH
Confidence 3455544 6 99999999999999999999999999999873
No 50
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.41 E-value=2.2e-12 Score=126.75 Aligned_cols=115 Identities=8% Similarity=0.079 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+.. ........+..... ....+++++|++|+....+. ...+..+ +.+.++|+++|+||+
T Consensus 85 ~~~~~l~DT~G~~~--~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~------l~~~~~piilV~NK~ 156 (472)
T PRK03003 85 GRRFTVVDTGGWEP--DAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARV------LRRSGKPVILAANKV 156 (472)
T ss_pred CcEEEEEeCCCcCC--cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHH------HHHcCCCEEEEEECc
Confidence 44689999999763 11222233332221 22235789999999865333 2223332 235689999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+.....+..+ +...++...+++||++|.|+++|++.|.+.++..
T Consensus 157 Dl~~~~~~~~~-------------------------------~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~ 201 (472)
T PRK03003 157 DDERGEADAAA-------------------------------LWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEV 201 (472)
T ss_pred cCCccchhhHH-------------------------------HHhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccc
Confidence 98532201100 0123444568999999999999999999988764
No 51
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.41 E-value=1.9e-12 Score=118.10 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=37.7
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHh-cCCceEEEecCcCCCCCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCET-VRRTMHIVNLDPAAENFD 62 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~-~g~~v~iVdLDPq~~~~~ 62 (284)
+++.|.|.| |||||+|.|||..|++ .|+||++||+|||++.+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~ 47 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTR 47 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHH
Confidence 345566999 9999999999999997 699999999999998653
No 52
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.40 E-value=1.1e-11 Score=102.87 Aligned_cols=122 Identities=12% Similarity=0.162 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHH--HHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNF--VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l--~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+.+..........+ .+.+......+++++++|+....+.... . .+......+.|.++|+||+
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~---~~~~~~~~~~~~iiv~nK~ 123 (174)
T cd01895 49 GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL--R---IAGLILEEGKALVIVVNKW 123 (174)
T ss_pred CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH--H---HHHHHHhcCCCEEEEEecc
Confidence 3468999999986542211111211 2222222224689999998754332221 1 1122234579999999999
Q ss_pred ccccch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 192 DLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 192 Dll~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
|+.... .....+. ..+.+.+...+...++++||++++|+.++.+.+.+.
T Consensus 124 Dl~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 124 DLVEKDSKTMKEFK-----------------------KEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccCCccHHHHHHHH-----------------------HHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 987542 0121111 111122222334689999999999999999988764
No 53
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.40 E-value=4.8e-12 Score=122.35 Aligned_cols=153 Identities=8% Similarity=0.100 Sum_probs=85.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHh--hhcCcccCchhhhhh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVM--EELGLGPNGGLIYCM 94 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm--~~~~lgPng~l~~~~ 94 (284)
+|.+++++|++ |||||+|..||.++.++|++|++|+.||+.... +. -++.+ .+.+ .-+...+....+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA-~e---QLk~~---a~~~~vp~~~~~~~~dp~--- 168 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGA-FD---QLKQN---ATKARIPFYGSYTESDPV--- 168 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhH-HH---HHHHH---hhccCCeEEeecCCCCHH---
Confidence 47899999999 999999999999999999999999999987421 10 00000 0000 000000000000
Q ss_pred HhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q 023298 95 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 174 (284)
Q Consensus 95 e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l 174 (284)
......+ + .+... ++++|||||||.+. ........|.+.....+ ++.+++++|+....+... +...
T Consensus 169 ~i~~~~l----~-~~~~~-~~DvViIDTaGr~~--~d~~lm~El~~i~~~~~-p~e~lLVlda~~Gq~a~~-~a~~---- 234 (429)
T TIGR01425 169 KIASEGV----E-KFKKE-NFDIIIVDTSGRHK--QEDSLFEEMLQVAEAIQ-PDNIIFVMDGSIGQAAEA-QAKA---- 234 (429)
T ss_pred HHHHHHH----H-HHHhC-CCCEEEEECCCCCc--chHHHHHHHHHHhhhcC-CcEEEEEeccccChhHHH-HHHH----
Confidence 0001111 1 12211 67999999999765 22233333333322222 456889999864322222 2221
Q ss_pred HHHHhcCCCEEEEecCCccccc
Q 023298 175 SAMVQLELPHVNILSKMDLVTN 196 (284)
Q Consensus 175 ~~~~~~~~p~IlVlNK~Dll~~ 196 (284)
+.+.-.+.-+|+||.|-..+
T Consensus 235 --F~~~~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 235 --FKDSVDVGSVIITKLDGHAK 254 (429)
T ss_pred --HHhccCCcEEEEECccCCCC
Confidence 22333478899999997543
No 54
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.40 E-value=7.5e-12 Score=104.84 Aligned_cols=120 Identities=19% Similarity=0.211 Sum_probs=72.1
Q ss_pred CCCEEEEeCCCCcccccc-cchHHHHHHHHHhcCCCeEEEEEecCCCCC-----CHHHHHHHHHHHHHHHH-------hc
Q 023298 114 DDDYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-----DVTKFISGCMASLSAMV-------QL 180 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~-~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-----~~~~~i~~~l~~l~~~~-------~~ 180 (284)
..++.++||||+.+.... ......+...+.. .+++++++|+.... ++...+..+...+.... ..
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGNQFLAHIRR---ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLT 119 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccHHHHHHHhc---cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHh
Confidence 346899999998653222 1222233444433 46899999997552 33222323333222222 24
Q ss_pred CCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHH
Q 023298 181 ELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI 260 (284)
Q Consensus 181 ~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I 260 (284)
++|.++|+||+|+.... ....+. ...........++++||+++.|++++++.+
T Consensus 120 ~~p~ivv~NK~Dl~~~~-~~~~~~--------------------------~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l 172 (176)
T cd01881 120 AKPVIYVLNKIDLDDAE-ELEEEL--------------------------VRELALEEGAEVVPISAKTEEGLDELIRAI 172 (176)
T ss_pred hCCeEEEEEchhcCchh-HHHHHH--------------------------HHHHhcCCCCCEEEEehhhhcCHHHHHHHH
Confidence 78999999999997544 332221 001122234679999999999999999988
Q ss_pred HHh
Q 023298 261 DNC 263 (284)
Q Consensus 261 ~~~ 263 (284)
...
T Consensus 173 ~~~ 175 (176)
T cd01881 173 YEL 175 (176)
T ss_pred Hhh
Confidence 654
No 55
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.40 E-value=1.2e-11 Score=103.42 Aligned_cols=112 Identities=13% Similarity=0.191 Sum_probs=70.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+... ..+.+..- ...+++++++|+.. +..+ +..++..+......+.|.++|.||+|
T Consensus 52 ~~l~i~D~~G~~~~-------~~~~~~~~--~~~d~~llv~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 119 (165)
T cd01864 52 VKLQIWDTAGQERF-------RTITQSYY--RSANGAIIAYDITR---RSSFESVPHWIEEVEKYGASNVVLLLIGNKCD 119 (165)
T ss_pred EEEEEEECCChHHH-------HHHHHHHh--ccCCEEEEEEECcC---HHHHHhHHHHHHHHHHhCCCCCcEEEEEECcc
Confidence 36799999996431 12222221 12467889999864 3333 33444444333345789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+...+ +.. . ....++.+.++...++++||++|.|++++++.+.+.+
T Consensus 120 l~~~~-~~~-~------------------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 120 LEEQR-EVL-F------------------------EEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred ccccc-ccC-H------------------------HHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 86533 110 0 0011223445667899999999999999999987653
No 56
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.39 E-value=6.6e-12 Score=115.16 Aligned_cols=44 Identities=7% Similarity=-0.071 Sum_probs=39.8
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
.-.++++++++||+ |||||++.+||.++++.|++|++|+.|++.
T Consensus 68 ~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 68 EENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 34567889999999 999999999999999999999999999854
No 57
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.38 E-value=5.5e-13 Score=121.76 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=38.8
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY 63 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~ 63 (284)
.+.|.|.| |||||+|.|||..|++.|+||++||+|||++.+.+
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~ 46 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRL 46 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 46666999 99999999999999999999999999999997543
No 58
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.38 E-value=1.1e-11 Score=118.82 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=35.9
Q ss_pred eEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 20 VIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 20 ~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
+++.|.+. | |||||+|.|||.+|+..|+||++||+|||++.+
T Consensus 105 ~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ~~ls 148 (387)
T TIGR03453 105 QVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQASLS 148 (387)
T ss_pred eEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHH
Confidence 44555444 6 999999999999999999999999999999853
No 59
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.38 E-value=1.6e-11 Score=110.60 Aligned_cols=155 Identities=17% Similarity=0.302 Sum_probs=92.2
Q ss_pred ceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC---CCCCccc------cccccccHHHHh----hhcC
Q 023298 19 LVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN---FDYPVAM------DIRELISLEDVM----EELG 83 (284)
Q Consensus 19 ~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~---~~~~~~~------dir~~i~~~~vm----~~~~ 83 (284)
|.+|+|+|+ | +||||++.|||..|++.|++|++||+|||+.. |..+.+. ..-+--.+.+.+ .+..
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g~~ 80 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDGVD 80 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCCCE
Confidence 456899999 5 99999999999999999999999999999983 3322100 000111233322 2445
Q ss_pred cccCchhhhh----hHhhhhcHHHHHHHHhhccC---CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEec
Q 023298 84 LGPNGGLIYC----MEHLEDNLDDWLAEELDNYL---DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 156 (284)
Q Consensus 84 lgPng~l~~~----~e~~~~~~~~~l~~~l~~~~---~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiD 156 (284)
+.|-|.+-.. .+.+...- .|+.+.+.... .+++|+||||+....+ ..+.+..+| .++.++-
T Consensus 81 ~LPfG~l~~~~~~~~~~l~~~~-~~l~~~l~~l~~~~~~~~iliD~P~g~~~~--------~~~al~~aD---~vL~V~~ 148 (243)
T PF06564_consen 81 FLPFGQLTEAEREAFEQLAQDP-QWLARALAALKALGPYDWILIDTPPGPSPY--------TRQALAAAD---LVLVVVN 148 (243)
T ss_pred EEcCCCCCHHHHHHHHHhhcCH-HHHHHHHHHHhccCCCCEEEEeCCCCCcHH--------HHHHHHhCC---eEEEEeC
Confidence 6687766432 22222222 56666666553 5789999999965522 223344444 3444443
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 157 SQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 157 a~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
+ ++..+. . +.. ........+|+|+.|..+
T Consensus 149 ~----Da~s~~--~---L~q-~~l~~~~~~liNq~~~~s 177 (243)
T PF06564_consen 149 P----DAASHA--R---LHQ-RALPAGHRFLINQYDPAS 177 (243)
T ss_pred C----CHHHHH--H---HHH-hcccCCcEEEEeccCccc
Confidence 3 222221 1 111 123446788999999754
No 60
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.38 E-value=1.2e-11 Score=104.98 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=75.3
Q ss_pred EEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhcH
Q 023298 23 CVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNL 101 (284)
Q Consensus 23 ~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~~ 101 (284)
+.-+.| +||||++.|||.++++.|+||++||+|||.....+- .+ +|. . ...+
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~----~~--------------~~~--~-------~~~l 56 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKM----WR--------------GPM--K-------MGAI 56 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHH----Hh--------------Ccc--h-------HHHH
Confidence 344457 999999999999999999999999999999754321 00 111 0 0112
Q ss_pred HHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 023298 102 DDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE 181 (284)
Q Consensus 102 ~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~ 181 (284)
.+++++ +.. .+++|||+||||..... ....+. ....+.+++++.+... . +......+..+.+.+
T Consensus 57 ~~~~~~-~~~-~~yD~VIiD~pp~~~~~--------~~~~~~-~~~ad~viiV~~p~~~----s-~~~~~~~~~~l~~~~ 120 (169)
T cd02037 57 KQFLTD-VDW-GELDYLVIDMPPGTGDE--------HLTLAQ-SLPIDGAVIVTTPQEV----A-LDDVRKAIDMFKKVN 120 (169)
T ss_pred HHHHHH-hhc-CCCCEEEEeCCCCCcHH--------HHHHHh-ccCCCeEEEEECCchh----h-HHHHHHHHHHHHhcC
Confidence 123332 221 17899999999975411 111121 0113456666654321 1 233333344555666
Q ss_pred CCE-EEEecCCccc
Q 023298 182 LPH-VNILSKMDLV 194 (284)
Q Consensus 182 ~p~-IlVlNK~Dll 194 (284)
.+. -+|+|+.+..
T Consensus 121 ~~~~gvv~N~~~~~ 134 (169)
T cd02037 121 IPILGVVENMSYFV 134 (169)
T ss_pred CCeEEEEEcCCccc
Confidence 666 4679998753
No 61
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.38 E-value=1.2e-11 Score=119.79 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHH-HhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l-~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+.. ........+.... ......++++|++|+....+. +..+..+ +.+.++|+++|+||+
T Consensus 48 ~~~~~liDT~G~~~--~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~------l~~~~~piilv~NK~ 119 (435)
T PRK00093 48 GREFILIDTGGIEP--DDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKI------LRKSNKPVILVVNKV 119 (435)
T ss_pred CcEEEEEECCCCCC--cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHH------HHHcCCcEEEEEECc
Confidence 45789999999875 1111222232222 122335789999999754333 3334333 335689999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
|+........ ++ ...++..++++||++|.|+.++++.|.+..+.
T Consensus 120 D~~~~~~~~~------------------------------~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~ 163 (435)
T PRK00093 120 DGPDEEADAY------------------------------EF-YSLGLGEPYPISAEHGRGIGDLLDAILEELPE 163 (435)
T ss_pred cCccchhhHH------------------------------HH-HhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCc
Confidence 9643210110 01 23455678999999999999999999885443
No 62
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.38 E-value=1.5e-11 Score=106.88 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.++||||+.+.... .....+...+......+++++++|+........ +..+...+..+...++|+++|+||+|+.
T Consensus 89 ~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~-~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 89 REVLLTDTVGFIRDLPH-QLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQ-IETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred ceEEEeCCCccccCCCH-HHHHHHHHHHHHHhcCCeEEEEEECCCCChhhH-HHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 37899999998653221 111222222221122467999999874432221 2222222222223468999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
... ..... .......++++||+++.|+++++..|.+.+
T Consensus 167 ~~~-~~~~~-------------------------------~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 167 DDE-ELEER-------------------------------LEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred ChH-HHHHH-------------------------------hhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 543 22100 111236799999999999999999987654
No 63
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.37 E-value=1.3e-11 Score=107.94 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=70.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcC-CCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLE-LPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~-~p~IlVlNK~D 192 (284)
.++.|+||||+.. ....+...+. ..+++++++|+... ..+... ..+. .+...+ .|+++|+||+|
T Consensus 83 ~~i~~iDtPG~~~------~~~~~~~~~~---~~D~~llVvd~~~~~~~~~t~--~~l~---~~~~~~~~~iiivvNK~D 148 (203)
T cd01888 83 RHVSFVDCPGHEI------LMATMLSGAA---VMDGALLLIAANEPCPQPQTS--EHLA---ALEIMGLKHIIIVQNKID 148 (203)
T ss_pred cEEEEEECCChHH------HHHHHHHhhh---cCCEEEEEEECCCCCCCcchH--HHHH---HHHHcCCCcEEEEEEchh
Confidence 6789999999532 1222333332 24689999999752 222211 0111 112233 47899999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
+..+. +....++ .+.+.+..+ ....++|+||++|+|+++|++.|.+.+|+++
T Consensus 149 l~~~~-~~~~~~~-----------------------~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 149 LVKEE-QALENYE-----------------------QIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred ccCHH-HHHHHHH-----------------------HHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 97533 2222211 112222322 2357999999999999999999999998865
No 64
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.37 E-value=1.3e-11 Score=103.07 Aligned_cols=112 Identities=15% Similarity=0.209 Sum_probs=64.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH-HHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~-~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+.+.. .+... +.. .+++++++|+....+... ...++..+.. ....+.|+++|+||+
T Consensus 49 ~~~~~l~Dt~G~~~~~-------~~~~~~~~~---~~~~v~vvd~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~NK~ 117 (167)
T cd04160 49 NARLKFWDLGGQESLR-------SLWDKYYAE---CHAIIYVIDSTDRERFEE-SKSALEKVLRNEALEGVPLLILANKQ 117 (167)
T ss_pred CEEEEEEECCCChhhH-------HHHHHHhCC---CCEEEEEEECchHHHHHH-HHHHHHHHHhChhhcCCCEEEEEEcc
Confidence 4578999999976421 12222 322 468999999864321111 2222221111 112478999999999
Q ss_pred ccccch--hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHH
Q 023298 192 DLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 192 Dll~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
|+.... .++.++++ ...+.. ....++++||++|+|++++++.|.+
T Consensus 118 D~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 118 DLPDALSVEEIKEVFQ--------------------------DKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ccccCCCHHHHHHHhc--------------------------cccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 985432 01111111 001111 2258999999999999999987753
No 65
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.36 E-value=3e-11 Score=100.82 Aligned_cols=119 Identities=14% Similarity=0.222 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCCcccccccc-hH-HHHHHHHHhcCCCeEEEEEecCCCCCC-HHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVP-VL-RNFVDHLKSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~-~~-~~l~~~l~~~d~~~vil~LiDa~~~~~-~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+.++.++||||+.+...+.. .. ...+..+.. ..+++++++|+....+ .......++..+.... .+.|+++|+||
T Consensus 46 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~--~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK 122 (168)
T cd01897 46 YLRWQVIDTPGLLDRPLEERNTIEMQAITALAH--LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNK 122 (168)
T ss_pred ceEEEEEECCCcCCccccCCchHHHHHHHHHHh--ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEc
Confidence 34789999999853211111 01 111122211 1357889999875322 1111222222221111 27899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+.... .+.. . .+. .......++++||++|.|++++++.+.+.+
T Consensus 123 ~Dl~~~~-~~~~-~--------------------------~~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 123 IDLLTFE-DLSE-I--------------------------EEE-EELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cccCchh-hHHH-H--------------------------HHh-hhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 9986533 2221 0 011 122346799999999999999999988764
No 66
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.36 E-value=5.5e-12 Score=105.33 Aligned_cols=123 Identities=11% Similarity=0.081 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+.++||||+.+....+ ... ....+++++++|+....+.......++..+.. ...+.|+++|.||+|+.
T Consensus 48 ~~l~~~D~~g~~~~~~~~-------~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~ 117 (171)
T cd00157 48 VNLGLWDTAGQEEYDRLR-------PLS--YPNTDVFLICFSVDSPSSFENVKTKWIPEIRH-YCPNVPIILVGTKIDLR 117 (171)
T ss_pred EEEEEEeCCCcccccccc-------hhh--cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEccHHhh
Confidence 367899999987632211 111 12246899999986422222222222222221 12369999999999997
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
... .....+......+ . .....+....++...++++||++|+|+++++..|.+
T Consensus 118 ~~~-~~~~~~~~~~~~v-------~-------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 118 DDE-NTLKKLEKGKEPI-------T-------PEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hch-hhhhhcccCCCcc-------C-------HHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 644 2221110000000 0 001123335566668999999999999999998865
No 67
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.36 E-value=9.2e-12 Score=102.48 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.++||||+.+..... ...++.+........+++++++|+......... ...+.+.++|+++|+||+|+.
T Consensus 43 ~~~~liDtpG~~~~~~~~-~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-------~~~~~~~~~~~iiv~NK~Dl~ 114 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYS-EDEKVARDFLLGEKPDLIVNVVDATNLERNLYL-------TLQLLELGLPVVVALNMIDEA 114 (158)
T ss_pred eEEEEEECCCccccCCCC-hhHHHHHHHhcCCCCcEEEEEeeCCcchhHHHH-------HHHHHHcCCCEEEEEehhhhc
Confidence 468999999986643321 122333332211335789999998753221111 112345689999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
... ...... ..+...++ ..++++||.+|.|+..+++.+..+.
T Consensus 115 ~~~-~~~~~~--------------------------~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 115 EKR-GIKIDL--------------------------DKLSELLG-VPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ccc-cchhhH--------------------------HHHHHhhC-CCeEEEEccCCCCHHHHHHHHHHHh
Confidence 533 221111 01111222 5799999999999999999988764
No 68
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.36 E-value=2e-11 Score=114.25 Aligned_cols=43 Identities=9% Similarity=0.018 Sum_probs=39.7
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
.++.+++++||+ |||||++.+||.++...|++|++++.|++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence 467889999999 9999999999999999999999999999764
No 69
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.35 E-value=3.1e-11 Score=99.73 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=63.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcC-CCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE-LPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~-~p~IlVlNK~Dl 193 (284)
..+.++||||+... ...+...+.. .+++++++|+.....+... ..+. .....+ +|.++|+||+|+
T Consensus 51 ~~~~~~DtpG~~~~------~~~~~~~~~~---ad~ii~V~d~~~~~~~~~~--~~~~---~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 51 KRLGFIDVPGHEKF------IKNMLAGAGG---IDLVLLVVAADEGIMPQTR--EHLE---ILELLGIKRGLVVLTKADL 116 (164)
T ss_pred cEEEEEECCChHHH------HHHHHhhhhc---CCEEEEEEECCCCccHhHH--HHHH---HHHHhCCCcEEEEEECccc
Confidence 46889999997431 1112222322 4689999998642112211 1111 112234 499999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHH
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
.... ......+ .+.+.+... ....++|+||++++|+++++..+.+
T Consensus 117 ~~~~-~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 117 VDED-WLELVEE-----------------------EIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cCHH-HHHHHHH-----------------------HHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 6532 1111110 111222221 2368999999999999999988764
No 70
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.35 E-value=2.7e-11 Score=97.78 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=73.2
Q ss_pred CCCEEEEeCCCCcccccccchH-HHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVL-RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~-~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..+++++||||+.+........ ..+...+.. .+++++++|+.......... ........+.|.++|+||+|
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~---~d~il~v~~~~~~~~~~~~~-----~~~~~~~~~~~~ivv~nK~D 115 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLER---ADLILFVVDADLRADEEEEK-----LLELLRERGKPVLLVLNKID 115 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHh---CCEEEEEEeCCCCCCHHHHH-----HHHHHHhcCCeEEEEEEccc
Confidence 3478999999987744322211 122222333 46789999998664333321 11223456899999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+.... ....... .............++++|+.++.|++++++.+.+.
T Consensus 116 ~~~~~-~~~~~~~-----------------------~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 116 LLPEE-EEEELLE-----------------------LRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred cCChh-hHHHHHH-----------------------HHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 97644 3322210 00111123345789999999999999999988765
No 71
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=1.8e-11 Score=105.60 Aligned_cols=124 Identities=12% Similarity=0.153 Sum_probs=75.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.|+||||+.... .+....- ...+++++++|+....+... +..++..+......+.|+++|.||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~-------~~~~~~~--~~ad~~i~v~D~~~~~s~~~-~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 50 VKLQIWDTAGQERFR-------SVTHAYY--RDAHALLLLYDITNKASFDN-IRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred EEEEEEeCCCcHHHH-------HhhHHHc--cCCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 367899999974311 1222221 12467899999864432222 3334443333333478999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCCCCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLKI 274 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~~~~ 274 (284)
..+ ....- ....+...++ ..++++||++|.|+++++..|.+.+....-..+.+
T Consensus 120 ~~~-~~~~~-------------------------~~~~l~~~~~-~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~~~~~ 172 (191)
T cd04112 120 GER-VVKRE-------------------------DGERLAKEYG-VPFMETSAKTGLNVELAFTAVAKELKHRKYEQPDE 172 (191)
T ss_pred hcc-ccCHH-------------------------HHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhccccCCC
Confidence 422 11100 0011123333 47999999999999999999999888775554544
Q ss_pred C
Q 023298 275 K 275 (284)
Q Consensus 275 ~ 275 (284)
+
T Consensus 173 ~ 173 (191)
T cd04112 173 G 173 (191)
T ss_pred C
Confidence 4
No 72
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.34 E-value=3.6e-11 Score=107.84 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=33.7
Q ss_pred EEEEEC-CC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 21 IKCVFS-PP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 21 ~~~viG-~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
++.|++ .| |||||++.|||.+|++.|+||++||+|||..
T Consensus 3 ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~ 43 (261)
T TIGR01968 3 VIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLR 43 (261)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 355555 46 9999999999999999999999999999854
No 73
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.34 E-value=2.4e-11 Score=115.27 Aligned_cols=115 Identities=16% Similarity=0.216 Sum_probs=70.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.++||||++....+ .....+...+.....++++++++|++....... +..+...+..+...++|+++|+||+|+
T Consensus 236 ~~~i~l~DT~G~~~~l~~-~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~-~~~~~~~L~~l~~~~~piIlV~NK~Dl 313 (351)
T TIGR03156 236 GGEVLLTDTVGFIRDLPH-ELVAAFRATLEEVREADLLLHVVDASDPDREEQ-IEAVEKVLEELGAEDIPQLLVYNKIDL 313 (351)
T ss_pred CceEEEEecCcccccCCH-HHHHHHHHHHHHHHhCCEEEEEEECCCCchHHH-HHHHHHHHHHhccCCCCEEEEEEeecC
Confidence 347899999998653222 223334333332233578999999975432222 222222222222347899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
...+ .+... . .+...++++||++|.|++.|++.|.+.
T Consensus 314 ~~~~-~v~~~-------------------------------~-~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 314 LDEP-RIERL-------------------------------E-EGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CChH-hHHHH-------------------------------H-hCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 6432 21100 0 012458999999999999999998765
No 74
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.34 E-value=4.3e-11 Score=115.64 Aligned_cols=124 Identities=16% Similarity=0.200 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHH--HHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNF--VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l--~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+..+.++||||+..........+.+ .+.+......+++++++|+....+..+. ..+....+.++|.|+|+||+
T Consensus 219 ~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-----~~~~~~~~~~~~iiiv~NK~ 293 (429)
T TIGR03594 219 GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-----RIAGLILEAGKALVIVVNKW 293 (429)
T ss_pred CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-----HHHHHHHHcCCcEEEEEECc
Confidence 3478999999975422111111221 2223222335789999999754333222 11122345689999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|++.++....++. ..+.+.+...++..++++||++|.|++++++.+.+.+.
T Consensus 294 Dl~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 294 DLVKDEKTREEFK-----------------------KELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred ccCCCHHHHHHHH-----------------------HHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9973221222221 12223334445678999999999999999999887653
No 75
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.34 E-value=3.1e-12 Score=116.67 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=38.5
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
.|.|.|.| |||||+|.|||..|++.|+||++||+|||++.+
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~ 43 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADST 43 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCcc
Confidence 57788999 999999999999999999999999999999864
No 76
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.34 E-value=1.5e-11 Score=104.00 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=33.8
Q ss_pred EEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 23 CVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 23 ~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
++-+.| +||||++.|||.+|+++|++|++||+|||....
T Consensus 4 v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~ 43 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNL 43 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Confidence 334457 999999999999999999999999999986543
No 77
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=99.34 E-value=8.3e-12 Score=116.25 Aligned_cols=164 Identities=20% Similarity=0.188 Sum_probs=94.3
Q ss_pred ccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCcc---ccccccccHHHH-------hhhc
Q 023298 14 SWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVA---MDIRELISLEDV-------MEEL 82 (284)
Q Consensus 14 ~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~---~dir~~i~~~~v-------m~~~ 82 (284)
.+-|||+ ++|+||. |||||+|+.|.+|..+.|++++.||||||++....|+. +.|...+++.|= .-.+
T Consensus 99 ~~~~GPr-v~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~eGf~l~~pLV~~F 177 (415)
T KOG2749|consen 99 ESSYGPR-VMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVIEGFSLTAPLVYNF 177 (415)
T ss_pred hhccCCE-EEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceecccchhheecccccchhhCcccCCceeeec
Confidence 4667999 9999999 99999999999999999999999999999997655542 234443333210 0123
Q ss_pred Cc-ccCchhhhhhHhhhhcHHHHHHHHhhccC--CCCEEEEeCCCCcccccccchHHH-HHHHHHhcCCCeEEEEEecCC
Q 023298 83 GL-GPNGGLIYCMEHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQIELFTHVPVLRN-FVDHLKSRNFNVCAVYLLDSQ 158 (284)
Q Consensus 83 ~l-gPng~l~~~~e~~~~~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~~~~~~~~-l~~~l~~~d~~~vil~LiDa~ 158 (284)
|+ .||..+.. .+.+.+.+-+.+.+++...+ +...++|||+|+++. .+.+ ++..+++-+ ..++++++..
T Consensus 178 G~~sp~~N~~L-Y~~~~s~La~v~~~~~~~n~~ar~sG~iInT~g~i~~-----egy~~llhai~~f~--v~vviVLg~E 249 (415)
T KOG2749|consen 178 GLTSPSTNLEL-YKALVSELAEVLKQRLSLNPEARVSGCIINTCGWIEG-----EGYAALLHAIKAFE--VDVVIVLGQE 249 (415)
T ss_pred cCCCCCcCHHH-HHHHHHHHHHHHHHHhccCchhcccceEEeccceecc-----ccHHHHHHHHHHcC--ccEEEEeccH
Confidence 33 34433211 01122222233444443222 568999999999872 1222 334343323 2255566642
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 159 FITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 159 ~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
...+.+... +...+--.++-+.|++.+.
T Consensus 250 ------rLy~~lkk~---~~~~~~v~vv~lpKsgGv~ 277 (415)
T KOG2749|consen 250 ------RLYSSLKKD---LPPKKNVRVVKLPKSGGVV 277 (415)
T ss_pred ------HHHHHHHhh---ccccccceEEEecCCCCeE
Confidence 323322111 1111223566677888865
No 78
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.33 E-value=3.9e-11 Score=104.70 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=88.9
Q ss_pred ccccCceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCC----Cc-ccccccc----ccHHHHh---
Q 023298 14 SWLYALVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY----PV-AMDIREL----ISLEDVM--- 79 (284)
Q Consensus 14 ~~~~~~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~----~~-~~dir~~----i~~~~vm--- 79 (284)
....+++.+.|+++ | +||||++.+||..+++.|++|++||+|||...... +. ...+.+. ..+++.+
T Consensus 12 ~~~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~l~~~i~~~ 91 (204)
T TIGR01007 12 FSGAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNFLSGTTDLSDAICDT 91 (204)
T ss_pred hhcCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCCCCCHHHHhcCCCCHHHhcccC
Confidence 33445777888876 5 99999999999999999999999999999874321 11 1111111 1223322
Q ss_pred --hhcCcccCchhhhh-hHhhh-hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEe
Q 023298 80 --EELGLGPNGGLIYC-MEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLL 155 (284)
Q Consensus 80 --~~~~lgPng~l~~~-~e~~~-~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~Li 155 (284)
.+..+.|.|..... .+.+. ..+.+.+ +.+.+ ++++|||||||..... ...+ +.+ ..+.+++++
T Consensus 92 ~~~~l~~l~~g~~~~~~~~~l~~~~l~~~l-~~l~~--~yD~ViiD~pp~~~~~-----~~~~---~~~--~~D~vilV~ 158 (204)
T TIGR01007 92 NIENLFVITSGPVPPNPTELLQSSNFKTLI-ETLRK--YFDYIIIDTPPIGTVT-----DAAI---IAR--ACDASILVT 158 (204)
T ss_pred CCCCEEEEeCCCCCCCHHHHhCcHHHHHHH-HHHHh--cCCEEEEeCCCccccc-----hHHH---HHH--hCCeEEEEE
Confidence 22333444433211 11111 1221222 23332 7899999999943211 1111 211 134577777
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCCCE-EEEecCCccc
Q 023298 156 DSQFITDVTKFISGCMASLSAMVQLELPH-VNILSKMDLV 194 (284)
Q Consensus 156 Da~~~~~~~~~i~~~l~~l~~~~~~~~p~-IlVlNK~Dll 194 (284)
++.... ... ...++..+.+.+.+. -+|+||.+.-
T Consensus 159 ~~~~~~-~~~----~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 159 DAGEIK-KRD----VQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred ECCCCC-HHH----HHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 764332 111 223334445566564 5789999864
No 79
>PRK11058 GTPase HflX; Provisional
Probab=99.33 E-value=4.1e-11 Score=116.37 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=71.7
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
+++++||||++.... +.....+...++....++++++++|++....... +..+...+..+...++|+++|+||+|+..
T Consensus 246 ~~~l~DTaG~~r~lp-~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~-l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 246 ETVLADTVGFIRHLP-HDLVAAFKATLQETRQATLLLHVVDAADVRVQEN-IEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred eEEEEecCcccccCC-HHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHH-HHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 679999999854322 2333445445544444678999999975422222 22121222223334789999999999864
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.. . .... . ...+...++++||++|.|++.|++.|.+.+.
T Consensus 324 ~~-~--~~~~---------------------------~-~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 324 DF-E--PRID---------------------------R-DEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ch-h--HHHH---------------------------H-HhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 22 1 0000 0 0122223588999999999999999998874
No 80
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.33 E-value=2.5e-11 Score=117.62 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHH--HHHHHhcCCCeEEEEEecCCCCCCHHH-HHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNF--VDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l--~~~l~~~d~~~vil~LiDa~~~~~~~~-~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+.++.++||||+..........+.+ .+.+..+...+++++++|+....+..+ .+. ....+.++|+++|+||
T Consensus 220 ~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~------~~~~~~~~~~ivv~NK 293 (435)
T PRK00093 220 GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIA------GLALEAGRALVIVVNK 293 (435)
T ss_pred CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH------HHHHHcCCcEEEEEEC
Confidence 4578999999975421111112211 222322223578999999986533332 222 2233568999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+...+ ...++. ..+.+.+...++..++++||++|.|+++++..+.+..
T Consensus 294 ~Dl~~~~-~~~~~~-----------------------~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 294 WDLVDEK-TMEEFK-----------------------KELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred ccCCCHH-HHHHHH-----------------------HHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9997433 222221 1222333444567899999999999999999887754
No 81
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.33 E-value=9.6e-11 Score=100.48 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=73.3
Q ss_pred CCEEEEeCCCCccccccc---chHHHHH-HHHHhcCCCeEEEEEecCCCCCCHHH-HHHHHHHHHHHHHhcCCCEEEEec
Q 023298 115 DDYLVFDCPGQIELFTHV---PVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNILS 189 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~---~~~~~l~-~~l~~~d~~~vil~LiDa~~~~~~~~-~i~~~l~~l~~~~~~~~p~IlVlN 189 (284)
.++.++||||+....... .....+. ..+...+...++++++|+........ .+.. .+...++|+++|+|
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~------~l~~~~~~~iiv~n 143 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIE------WLKEYGIPVLIVLT 143 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHH------HHHHcCCcEEEEEE
Confidence 478999999964311100 1111222 23333333456788888764322222 1222 22356899999999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+|+.+.. +..... ..+.+.+... ...++|+||++++|++++++.|.+.+.++
T Consensus 144 K~Dl~~~~-~~~~~~-----------------------~~i~~~l~~~-~~~~~~~Sa~~~~gi~~l~~~i~~~~~~~ 196 (196)
T PRK00454 144 KADKLKKG-ERKKQL-----------------------KKVRKALKFG-DDEVILFSSLKKQGIDELRAAIAKWLAEA 196 (196)
T ss_pred CcccCCHH-HHHHHH-----------------------HHHHHHHHhc-CCceEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 99997643 222211 1122333333 46889999999999999999999988764
No 82
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.33 E-value=3.2e-11 Score=101.83 Aligned_cols=121 Identities=16% Similarity=0.143 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~D 192 (284)
+.++.++||||+.+.. . .....+.. .++++|++|++...+..+ +..++..+.... ..+.|+++|.||+|
T Consensus 42 ~~~i~l~Dt~G~~~~~---~---~~~~~~~~---ad~ii~V~D~s~~~s~~~-~~~~~~~~~~~~~~~~~piilv~NK~D 111 (169)
T cd04158 42 NLKFTIWDVGGKHKLR---P---LWKHYYLN---TQAVVFVVDSSHRDRVSE-AHSELAKLLTEKELRDALLLIFANKQD 111 (169)
T ss_pred CEEEEEEECCCChhcc---h---HHHHHhcc---CCEEEEEEeCCcHHHHHH-HHHHHHHHhcChhhCCCCEEEEEeCcC
Confidence 4478999999976421 1 11112322 468999999864322222 222222221111 13479999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhc-----cCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE-----YSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~-----~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+.... ...+.. +.+.. .....|+++||++|.|+++++..+.+.+.++
T Consensus 112 l~~~~-~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 112 VAGAL-SVEEMT---------------------------ELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred cccCC-CHHHHH---------------------------HHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 85321 111111 11111 1124688999999999999999999999999
Q ss_pred CCCCC
Q 023298 268 EDADL 272 (284)
Q Consensus 268 ~d~~~ 272 (284)
+.+++
T Consensus 164 ~~~~~ 168 (169)
T cd04158 164 GVLDV 168 (169)
T ss_pred ccccc
Confidence 88764
No 83
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.32 E-value=2.3e-11 Score=110.49 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=33.9
Q ss_pred EEEEC-CC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 22 KCVFS-PP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 22 ~~viG-~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
+.|.+ .| |||||+|.|||.+|++.|++|++||+|||...
T Consensus 5 iav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~ 45 (270)
T PRK10818 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRN 45 (270)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCC
Confidence 44444 57 99999999999999999999999999998653
No 84
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.31 E-value=1.2e-11 Score=118.80 Aligned_cols=123 Identities=14% Similarity=0.171 Sum_probs=82.0
Q ss_pred CCCEEEEeCCCCcccccccchHHH--HHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRN--FVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~--l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+..|++|||.|.=.--.-....++ ..+.+++++.++++++++|++.. +..+..+..+ ..+.++++|+|+||
T Consensus 225 ~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~------i~~~g~~~vIvvNK 298 (444)
T COG1160 225 GRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGL------IEEAGRGIVIVVNK 298 (444)
T ss_pred CeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHH------HHHcCCCeEEEEEc
Confidence 557999999994211000000111 24555555567899999999864 5555555544 34789999999999
Q ss_pred Cccccch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
||++.+. ..++++. ..|-..+...++..++++||++|.++..|++.|.++..
T Consensus 299 WDl~~~~~~~~~~~k-----------------------~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 299 WDLVEEDEATMEEFK-----------------------KKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred cccCCchhhHHHHHH-----------------------HHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 9998742 1222222 12233445567889999999999999999999988753
No 85
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.31 E-value=7.7e-11 Score=96.36 Aligned_cols=109 Identities=11% Similarity=0.099 Sum_probs=67.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.++||||+.+.... .....+.+........+++++++|+......... ..+. . ..++|+++|+||+|+
T Consensus 48 ~~~~~i~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~--~~~~---~--~~~~~vi~v~nK~D~ 119 (157)
T cd04164 48 GIPVRLIDTAGIRETEDE-IEKIGIERAREAIEEADLVLFVIDASRGLDEEDL--EILE---L--PADKPIIVVLNKSDL 119 (157)
T ss_pred CEEEEEEECCCcCCCcch-HHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHH--HHHH---h--hcCCCEEEEEEchhc
Confidence 346899999998653221 0011111111111224689999999854332221 1111 1 457899999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.... .. . .......++++||+++.|+++|++.|.+.+
T Consensus 120 ~~~~-~~---~------------------------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 120 LPDS-EL---L------------------------------SLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred CCcc-cc---c------------------------------cccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 7544 21 0 111236799999999999999999988764
No 86
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.29 E-value=1.3e-10 Score=114.19 Aligned_cols=123 Identities=11% Similarity=0.124 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHH--HHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNF--VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l--~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+............+ ++.......++++++++|+....+.... . .+......++|+|+|+||+
T Consensus 258 ~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~--~---~~~~~~~~~~piIiV~NK~ 332 (472)
T PRK03003 258 GKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQ--R---VLSMVIEAGRALVLAFNKW 332 (472)
T ss_pred CEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHH--H---HHHHHHHcCCCEEEEEECc
Confidence 4467899999974321111111111 1111122335789999999754333221 1 1223345789999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+.... ..... ...+.+.+....+..++++||++|.|++++++.|.+.+.
T Consensus 333 Dl~~~~-~~~~~-----------------------~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 333 DLVDED-RRYYL-----------------------EREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred ccCChh-HHHHH-----------------------HHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 997532 11111 011112223334568899999999999999999988764
No 87
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.29 E-value=8.4e-11 Score=120.95 Aligned_cols=123 Identities=12% Similarity=0.140 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHH---HHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNF---VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l---~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+.++.++||||+.+..... .+... ++........+++++++|+....+.... . + +......++|+|+|+||
T Consensus 497 ~~~~~liDTaG~~~~~~~~-~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~-~-i---~~~~~~~~~piIiV~NK 570 (712)
T PRK09518 497 GEDWLFIDTAGIKRRQHKL-TGAEYYSSLRTQAAIERSELALFLFDASQPISEQDL-K-V---MSMAVDAGRALVLVFNK 570 (712)
T ss_pred CCEEEEEECCCcccCcccc-hhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHH-H-H---HHHHHHcCCCEEEEEEc
Confidence 4578899999976432211 12122 2222223345789999999755333322 1 1 12234568999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+|+.+.+ ....+. ..+...+...++..++++||++|.|+++|++.+.+.++.
T Consensus 571 ~DL~~~~-~~~~~~-----------------------~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 571 WDLMDEF-RRQRLE-----------------------RLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred hhcCChh-HHHHHH-----------------------HHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9997533 211110 111122233355788999999999999999999888764
No 88
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.29 E-value=1.4e-10 Score=96.26 Aligned_cols=111 Identities=14% Similarity=0.227 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+.++||||+.... .+.+. +.. .+++++++|+. ++..+ ...++..+......+.|.++|.||+
T Consensus 50 ~~~~i~D~~G~~~~~-------~~~~~~~~~---~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~ 116 (163)
T cd01860 50 VKFEIWDTAGQERYR-------SLAPMYYRG---AAAAIVVYDIT---SEESFEKAKSWVKELQRNASPNIIIALVGNKA 116 (163)
T ss_pred EEEEEEeCCchHHHH-------HHHHHHhcc---CCEEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 367899999964311 11111 222 46789999986 34333 3334443333333468899999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+.... .... +. ..++...++ ..++++||++|.|+.+++..+.+.+|
T Consensus 117 D~~~~~-~~~~------~~-------------------~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd01860 117 DLESKR-QVST------EE-------------------AQEYADENG-LLFFETSAKTGENVNELFTEIAKKLP 163 (163)
T ss_pred cccccC-cCCH------HH-------------------HHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 986422 1100 00 011123334 67999999999999999999988764
No 89
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.28 E-value=1e-10 Score=109.55 Aligned_cols=68 Identities=15% Similarity=0.068 Sum_probs=49.8
Q ss_pred hcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHH
Q 023298 179 QLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS 258 (284)
Q Consensus 179 ~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~ 258 (284)
...+|+|.|+||+|+..++ +..+.+ ...+.+..++|+||+.+.++..|.+
T Consensus 212 lt~KPvI~VlNK~Dl~~~~-~~~~~l-----------------------------~~~~~~~~iI~iSA~~e~~L~~L~~ 261 (318)
T cd01899 212 KRSKPMVIAANKADIPDAE-NNISKL-----------------------------RLKYPDEIVVPTSAEAELALRRAAK 261 (318)
T ss_pred hcCCcEEEEEEHHHccChH-HHHHHH-----------------------------HhhCCCCeEEEEeCcccccHHHHHH
Confidence 3457999999999975433 221111 1233467899999999999999998
Q ss_pred -HHHHhcCCCCCCCCCCCC
Q 023298 259 -QIDNCIQWGEDADLKIKD 276 (284)
Q Consensus 259 -~I~~~l~~g~d~~~~~~~ 276 (284)
.+.+++|+|+..+...++
T Consensus 262 ~~i~~~lPe~~~f~~~~~~ 280 (318)
T cd01899 262 QGLIKYDPGDSDFEITDEL 280 (318)
T ss_pred hhHHHhCCCCCCceecccC
Confidence 599999999988765543
No 90
>PRK12736 elongation factor Tu; Reviewed
Probab=99.27 E-value=1.5e-10 Score=111.47 Aligned_cols=115 Identities=21% Similarity=0.280 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH-HHHHHHHHHHHHhcCCCE-EEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF-ISGCMASLSAMVQLELPH-VNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~-i~~~l~~l~~~~~~~~p~-IlVlNK~ 191 (284)
+.++.++||||+.+ ....+...+. ..+++++++|+.....+... ... .....+.|+ |+|+||+
T Consensus 74 ~~~i~~iDtPGh~~------f~~~~~~~~~---~~d~~llVvd~~~g~~~~t~~~~~------~~~~~g~~~~IvviNK~ 138 (394)
T PRK12736 74 KRHYAHVDCPGHAD------YVKNMITGAA---QMDGAILVVAATDGPMPQTREHIL------LARQVGVPYLVVFLNKV 138 (394)
T ss_pred CcEEEEEECCCHHH------HHHHHHHHHh---hCCEEEEEEECCCCCchhHHHHHH------HHHHcCCCEEEEEEEec
Confidence 55899999999542 1223333332 35789999999754233221 222 233568895 6889999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC----CceEEEEeccCcc--------cHHHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKES--------SIRYVLSQ 259 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~----~~~~ipiSa~~~~--------~l~~Ll~~ 259 (284)
|+++++ +..+... ..+.+.+..++ ...++|+||++|. ++..|++.
T Consensus 139 D~~~~~-~~~~~i~----------------------~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~ 195 (394)
T PRK12736 139 DLVDDE-ELLELVE----------------------MEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDA 195 (394)
T ss_pred CCcchH-HHHHHHH----------------------HHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHH
Confidence 987543 2222111 12223333343 3689999999983 78999999
Q ss_pred HHHhcCC
Q 023298 260 IDNCIQW 266 (284)
Q Consensus 260 I~~~l~~ 266 (284)
+++.+|.
T Consensus 196 l~~~lp~ 202 (394)
T PRK12736 196 VDEYIPT 202 (394)
T ss_pred HHHhCCC
Confidence 9998874
No 91
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.27 E-value=1.1e-10 Score=96.73 Aligned_cols=112 Identities=11% Similarity=0.159 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~D 192 (284)
.++.++||||+.+.. .+.+. +.. .+.+++++|+....+. ..+..+...+.... ..+.|+++|.||+|
T Consensus 50 ~~~~i~Dt~G~~~~~-------~~~~~~~~~---~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~piiiv~NK~D 118 (164)
T cd04145 50 AILDILDTAGQEEFS-------AMREQYMRT---GEGFLLVFSVTDRGSF-EEVDKFHTQILRVKDRDEFPMILVGNKAD 118 (164)
T ss_pred EEEEEEECCCCcchh-------HHHHHHHhh---CCEEEEEEECCCHHHH-HHHHHHHHHHHHHhCCCCCCEEEEeeCcc
Confidence 357889999976421 12222 333 3578888888643221 11334433332222 24789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+..++ .+.... ..+....++ ..++++||++|.|++++++.+.+.+
T Consensus 119 l~~~~-~~~~~~-------------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 119 LEHQR-KVSREE-------------------------GQELARKLK-IPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ccccc-eecHHH-------------------------HHHHHHHcC-CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 85432 111000 011223344 4789999999999999999987764
No 92
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.27 E-value=6.8e-11 Score=98.30 Aligned_cols=113 Identities=13% Similarity=0.153 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK~D 192 (284)
..+.++||||+.... .+... +.. .+.+++++|+....+... +..+...+... ...+.|.++|.||+|
T Consensus 48 ~~l~i~Dt~g~~~~~-------~~~~~~~~~---~~~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~pii~v~nK~D 116 (164)
T smart00173 48 CLLDILDTAGQEEFS-------AMRDQYMRT---GEGFLLVYSITDRQSFEE-IKKFREQILRVKDRDDVPIVLVGNKCD 116 (164)
T ss_pred EEEEEEECCCcccch-------HHHHHHHhh---CCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 356789999976522 12222 333 356788888763322111 22332222222 224689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+...+ ...... +.++...++ ..++++||++|.|++++++.+.+.+.
T Consensus 117 l~~~~-~~~~~~-------------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 117 LESER-VVSTEE-------------------------GKELARQWG-CPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred ccccc-eEcHHH-------------------------HHHHHHHcC-CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 86432 111000 011123333 68999999999999999999987654
No 93
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.27 E-value=9.8e-11 Score=97.28 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHH-HHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS-LSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~-l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+... ..+.+ .+.. .+++++++|+....+... ....+.. +......++|+++|+||+
T Consensus 42 ~~~~~i~Dt~G~~~~-------~~~~~~~~~~---~~~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd04151 42 NLKFQVWDLGGQTSI-------RPYWRCYYSN---TDAIIYVVDSTDRDRLGT-AKEELHAMLEEEELKGAVLLVFANKQ 110 (158)
T ss_pred CEEEEEEECCCCHHH-------HHHHHHHhcC---CCEEEEEEECCCHHHHHH-HHHHHHHHHhchhhcCCcEEEEEeCC
Confidence 346899999997541 11222 2322 468999999864322111 1111111 111112368999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
|+.... ...+.. ..+.. .... ....+++|+||++|.|++++++.+.+
T Consensus 111 Dl~~~~-~~~~i~--------~~~~~--------------~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 111 DMPGAL-SEAEIS--------EKLGL--------------SELK-DRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCCCC-CHHHHH--------HHhCc--------------cccC-CCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 985422 111111 00000 0000 01246999999999999999998754
No 94
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.26 E-value=8.7e-11 Score=98.90 Aligned_cols=110 Identities=13% Similarity=0.214 Sum_probs=69.0
Q ss_pred EEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchh
Q 023298 119 VFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKK 198 (284)
Q Consensus 119 iiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~ 198 (284)
++||||+.. .+......+...++. .+++++++|+....+. +...+.. ...++|+++++||+|+...+
T Consensus 41 ~iDtpG~~~--~~~~~~~~~~~~~~~---ad~il~v~d~~~~~s~---~~~~~~~----~~~~~~ii~v~nK~Dl~~~~- 107 (158)
T PRK15467 41 DIDTPGEYF--SHPRWYHALITTLQD---VDMLIYVHGANDPESR---LPAGLLD----IGVSKRQIAVISKTDMPDAD- 107 (158)
T ss_pred cccCCcccc--CCHHHHHHHHHHHhc---CCEEEEEEeCCCcccc---cCHHHHh----ccCCCCeEEEEEccccCccc-
Confidence 589999753 232333344444433 4789999998744221 1111111 12367999999999984321
Q ss_pred hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC-ceEEEEeccCcccHHHHHHHHHHhcCCCCC
Q 023298 199 EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWGED 269 (284)
Q Consensus 199 ~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~-~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d 269 (284)
.... .+.+...++ ..++++||++|+|+++|++.+.+.++.-..
T Consensus 108 -~~~~---------------------------~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 151 (158)
T PRK15467 108 -VAAT---------------------------RKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEA 151 (158)
T ss_pred -HHHH---------------------------HHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhhhc
Confidence 1111 122334454 589999999999999999999998865443
No 95
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.26 E-value=7.2e-11 Score=121.47 Aligned_cols=115 Identities=11% Similarity=0.135 Sum_probs=73.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+... .......+.+... ....+++++|++|+.....+ +..+... +.+.++|+|+|+||+
T Consensus 322 ~~~~~liDT~G~~~~--~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~------Lr~~~~pvIlV~NK~ 393 (712)
T PRK09518 322 GTDFKLVDTGGWEAD--VEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRM------LRRAGKPVVLAVNKI 393 (712)
T ss_pred CEEEEEEeCCCcCCC--CccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHH------HHhcCCCEEEEEECc
Confidence 447899999997642 2223333433322 22345789999999754333 3323332 235789999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+........++ ...++...+|+||++|.|+.+|++.|.+.++..
T Consensus 394 D~~~~~~~~~~~-------------------------------~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 394 DDQASEYDAAEF-------------------------------WKLGLGEPYPISAMHGRGVGDLLDEALDSLKVA 438 (712)
T ss_pred ccccchhhHHHH-------------------------------HHcCCCCeEEEECCCCCCchHHHHHHHHhcccc
Confidence 985422010000 123445678999999999999999999998764
No 96
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.26 E-value=3.2e-11 Score=109.43 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=37.5
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
++++.|.|.| |||||+|.|||..|++.| ||++||+|||++.+
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~~~ 44 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKADTT 44 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcccc
Confidence 3456777999 999999999999999999 99999999998754
No 97
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.26 E-value=7.5e-11 Score=98.72 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=36.4
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
+.++|++ |||||++.+++.++...|.++.+++.||+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~ 41 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPF 41 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC
Confidence 6789999 99999999999999999999999999998764
No 98
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.26 E-value=4.1e-10 Score=103.18 Aligned_cols=138 Identities=15% Similarity=0.188 Sum_probs=82.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+.. ......+.+.. .+++++++|+...-.+ ...+.. ...+.++|+++++||+|
T Consensus 63 ~~~i~liDTPG~~d------f~~~~~~~l~~---aD~ailVVDa~~g~~~~t~~~~~------~~~~~~~p~ivviNK~D 127 (270)
T cd01886 63 DHRINIIDTPGHVD------FTIEVERSLRV---LDGAVAVFDAVAGVEPQTETVWR------QADRYNVPRIAFVNKMD 127 (270)
T ss_pred CEEEEEEECCCcHH------HHHHHHHHHHH---cCEEEEEEECCCCCCHHHHHHHH------HHHHcCCCEEEEEECCC
Confidence 56899999999754 12233444544 3688999999764333 222322 23467899999999999
Q ss_pred cccchh-----hhhhhcCc----------------------------------------c-hH-----------HHHHHh
Q 023298 193 LVTNKK-----EIEDYLNP----------------------------------------E-SQ-----------FLLSEL 215 (284)
Q Consensus 193 ll~~~~-----~l~~~l~~----------------------------------------~-~~-----------~l~~~l 215 (284)
+..... ++.+.+.. + ++ .|.+.+
T Consensus 128 ~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~v 207 (270)
T cd01886 128 RTGADFFRVVEQIREKLGANPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETL 207 (270)
T ss_pred CCCCCHHHHHHHHHHHhCCCceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHH
Confidence 864210 11111100 0 11 112222
Q ss_pred hhcchh-----------HHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 216 NQHMAP-----------QFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 216 ~~~~~~-----------~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
.+.... ....+...+.+.+..-.+..++.-||.++.|+..|++.|..++|.
T Consensus 208 ae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~ 269 (270)
T cd01886 208 AEFDDELMEKYLEGEEITEEEIKAAIRKGTIANKIVPVLCGSAFKNKGVQPLLDAVVDYLPS 269 (270)
T ss_pred hcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCC
Confidence 211111 122355566666666666777778999999999999999999874
No 99
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.26 E-value=6.7e-11 Score=97.97 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=64.6
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~Dl 193 (284)
.+.+.||||+.... . +.+. +.. .+++++++|.....+-. .+..++..+.... ..+.|+++|.||+|+
T Consensus 50 ~l~i~Dt~G~~~~~---~----~~~~~~~~---~~~~ilv~d~~~~~s~~-~~~~~~~~i~~~~~~~~~piilv~nK~Dl 118 (163)
T cd04136 50 MLEILDTAGTEQFT---A----MRDLYIKN---GQGFVLVYSITSQSSFN-DLQDLREQILRVKDTENVPMVLVGNKCDL 118 (163)
T ss_pred EEEEEECCCccccc---h----HHHHHhhc---CCEEEEEEECCCHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 46789999975421 1 2222 222 35678888875332211 1333333222222 236899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
...+ ....-. ..++...++ ..++++||++|.|+.++++.+.+.+
T Consensus 119 ~~~~-~~~~~~-------------------------~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 119 EDER-VVSREE-------------------------GQALARQWG-CPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred cccc-eecHHH-------------------------HHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHhc
Confidence 6432 111000 011113344 6899999999999999999987653
No 100
>CHL00071 tufA elongation factor Tu
Probab=99.26 E-value=1.8e-10 Score=111.38 Aligned_cols=114 Identities=20% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCC-EEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELP-HVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p-~IlVlNK~ 191 (284)
+.+++++||||+. .....+...+. ..+++++++|+...-.+ ...+.. .....++| +|+|+||+
T Consensus 74 ~~~~~~iDtPGh~------~~~~~~~~~~~---~~D~~ilVvda~~g~~~qt~~~~~------~~~~~g~~~iIvvvNK~ 138 (409)
T CHL00071 74 NRHYAHVDCPGHA------DYVKNMITGAA---QMDGAILVVSAADGPMPQTKEHIL------LAKQVGVPNIVVFLNKE 138 (409)
T ss_pred CeEEEEEECCChH------HHHHHHHHHHH---hCCEEEEEEECCCCCcHHHHHHHH------HHHHcCCCEEEEEEEcc
Confidence 5689999999943 22333444443 34789999999754222 222222 23356889 56899999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCccc---------------
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESS--------------- 252 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~--------------- 252 (284)
|++.++ +..+.+. ..+.+.+...++ ..|+|+||.+|.+
T Consensus 139 D~~~~~-~~~~~~~----------------------~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w 195 (409)
T CHL00071 139 DQVDDE-ELLELVE----------------------LEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKW 195 (409)
T ss_pred CCCCHH-HHHHHHH----------------------HHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCch
Confidence 997544 3222211 122333344333 6899999999873
Q ss_pred ---HHHHHHHHHHhcC
Q 023298 253 ---IRYVLSQIDNCIQ 265 (284)
Q Consensus 253 ---l~~Ll~~I~~~l~ 265 (284)
+..|++.|++..|
T Consensus 196 ~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 196 VDKIYNLMDAVDSYIP 211 (409)
T ss_pred hhhHHHHHHHHHhhCC
Confidence 5788888888764
No 101
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.26 E-value=1.3e-10 Score=97.67 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=63.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.++||||+... .......++. .+++++++|+....+.......+...+......++|+++++||+|+
T Consensus 57 ~~~~~~~D~~G~~~~------~~~~~~~~~~---~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (173)
T cd04155 57 GFKLNVWDIGGQRAI------RPYWRNYFEN---TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL 127 (173)
T ss_pred CEEEEEEECCCCHHH------HHHHHHHhcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence 346789999996431 1111122322 3578999998643222221111111111222357899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
.... ....+. +.++. .++ ......++++||++|+|++++++.|.+
T Consensus 128 ~~~~-~~~~i~--------~~l~~-------------~~~--~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 128 ATAA-PAEEIA--------EALNL-------------HDL--RDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ccCC-CHHHHH--------HHcCC-------------ccc--CCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 6533 222221 10100 000 011235789999999999999988754
No 102
>PRK00049 elongation factor Tu; Reviewed
Probab=99.26 E-value=1.8e-10 Score=110.95 Aligned_cols=114 Identities=18% Similarity=0.284 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHH-HHHHHHHHHHHHHhcCCCEE-EEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPHV-NILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~-~i~~~l~~l~~~~~~~~p~I-lVlNK~ 191 (284)
+.+++++||||+.. ....+.. .+...+++++++|+...-.+.. .+.. .....+.|++ +++||+
T Consensus 74 ~~~i~~iDtPG~~~------f~~~~~~---~~~~aD~~llVVDa~~g~~~qt~~~~~------~~~~~g~p~iiVvvNK~ 138 (396)
T PRK00049 74 KRHYAHVDCPGHAD------YVKNMIT---GAAQMDGAILVVSAADGPMPQTREHIL------LARQVGVPYIVVFLNKC 138 (396)
T ss_pred CeEEEEEECCCHHH------HHHHHHh---hhccCCEEEEEEECCCCCchHHHHHHH------HHHHcCCCEEEEEEeec
Confidence 56899999999632 1222222 2334578999999975433322 2222 2335688986 589999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcc----------cHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKES----------SIRYVL 257 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~----------~l~~Ll 257 (284)
|+++++ +..+.+ ...+.+++...++ ..|+|+||.++. ++..|+
T Consensus 139 D~~~~~-~~~~~~----------------------~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll 195 (396)
T PRK00049 139 DMVDDE-ELLELV----------------------EMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELM 195 (396)
T ss_pred CCcchH-HHHHHH----------------------HHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHH
Confidence 997533 222111 1122334444433 679999999975 578999
Q ss_pred HHHHHhcC
Q 023298 258 SQIDNCIQ 265 (284)
Q Consensus 258 ~~I~~~l~ 265 (284)
++|+..++
T Consensus 196 ~~l~~~~~ 203 (396)
T PRK00049 196 DAVDSYIP 203 (396)
T ss_pred HHHHhcCC
Confidence 99998776
No 103
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.26 E-value=5.3e-11 Score=98.95 Aligned_cols=112 Identities=14% Similarity=0.197 Sum_probs=66.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.+.||||+.. ...+.+..- ...+++++++|.....+... +..++..+... ..+.|.++|.||+|+.
T Consensus 52 ~~l~i~Dt~G~~~-------~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~nK~Dl~ 120 (164)
T cd04101 52 VELFIFDSAGQEL-------YSDMVSNYW--ESPSVFILVYDVSNKASFEN-CSRWVNKVRTA-SKHMPGVLVGNKMDLA 120 (164)
T ss_pred EEEEEEECCCHHH-------HHHHHHHHh--CCCCEEEEEEECcCHHHHHH-HHHHHHHHHHh-CCCCCEEEEEECcccc
Confidence 4689999999633 122333221 22478999999864322211 33333322221 2468999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+.. ++.... . ......++ ..++++||+++.|++++++.+.+.+
T Consensus 121 ~~~-~~~~~~------------------~-------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 121 DKA-EVTDAQ------------------A-------QAFAQANQ-LKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred ccc-CCCHHH------------------H-------HHHHHHcC-CeEEEEeCCCCCChHHHHHHHHHHh
Confidence 533 221100 0 00112223 5689999999999999999887653
No 104
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.26 E-value=9.1e-11 Score=98.63 Aligned_cols=126 Identities=10% Similarity=0.075 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.+.||||+.+... +.+.. ....+++++++|.....+-......++..+.. ...+.|+++|.||+|+.
T Consensus 46 ~~~~i~Dt~G~~~~~~-------~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~-~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 46 VELGLWDTAGQEDYDR-------LRPLS--YPDTDVFLICFSVDSPASFENVKEKWYPEVKH-FCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEEEEECCCCcccch-------hchhh--cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEecChhhh
Confidence 3678999999765221 11111 12246889999986332222211223332222 12479999999999987
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.+......+.......+ . .....++...++...++++||++|.|++++++.+.+..
T Consensus 116 ~~~~~~~~~~~~~~~~v----~----------~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 116 EDKSTLRELSKQKQEPV----T----------YEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hChhhhhhhhcccCCCc----c----------HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 53312222211000000 0 01112333556667899999999999999999987653
No 105
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.26 E-value=9.7e-11 Score=97.00 Aligned_cols=112 Identities=10% Similarity=0.092 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh-----cCCCEEEEe
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-----LELPHVNIL 188 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~-----~~~p~IlVl 188 (284)
..+.++||||+.+. ..+.+. +.. .+++++++|.+...+-.. +..++..+..... .+.|+++|.
T Consensus 49 ~~l~i~Dt~G~~~~-------~~~~~~~~~~---~d~~ilv~D~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~piilv~ 117 (168)
T cd04119 49 VRVNFFDLSGHPEY-------LEVRNEFYKD---TQGVLLVYDVTDRQSFEA-LDSWLKEMKQEGGPHGNMENIVVVVCA 117 (168)
T ss_pred EEEEEEECCccHHH-------HHHHHHHhcc---CCEEEEEEECCCHHHHHh-HHHHHHHHHHhccccccCCCceEEEEE
Confidence 46789999997431 122222 222 467899999864321111 3333333332222 458999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
||+|+..+. ....- . ......+.+ ..++++||++|+|++++++.|.+.+
T Consensus 118 nK~Dl~~~~-~~~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 118 NKIDLTKHR-AVSED------E-------------------GRLWAESKG-FKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred Echhccccc-ccCHH------H-------------------HHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 999986322 11000 0 011113334 5789999999999999999987653
No 106
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.25 E-value=8.7e-11 Score=97.52 Aligned_cols=111 Identities=12% Similarity=0.149 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..+.++||||+.... .+.+. +.. .+++++++|+....+... +..++..+..+...+.|.++|.||+|+
T Consensus 49 ~~l~l~D~~G~~~~~-------~~~~~~~~~---~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iivv~nK~D~ 117 (161)
T cd04113 49 VKLQIWDTAGQERFR-------SVTRSYYRG---AAGALLVYDITNRTSFEA-LPTWLSDARALASPNIVVILVGNKSDL 117 (161)
T ss_pred EEEEEEECcchHHHH-------HhHHHHhcC---CCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEEchhc
Confidence 357899999974311 12222 222 467899999864322111 344444333344457899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
.... ..... . .......++ ..++.+||+++.|++++++.+.+.
T Consensus 118 ~~~~-~~~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 118 ADQR-EVTFL------E-------------------ASRFAQENG-LLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred chhc-cCCHH------H-------------------HHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHh
Confidence 6422 11000 0 011223344 689999999999999999988764
No 107
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.25 E-value=2.7e-10 Score=99.98 Aligned_cols=104 Identities=21% Similarity=0.324 Sum_probs=59.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCC-CEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLEL-PHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~-p~IlVlNK~ 191 (284)
+.++.++||||+.+. ...+...+.. .+++++++|+...... ......+ ....+. ++|+|+||+
T Consensus 76 ~~~~~liDTpG~~~~------~~~~~~~~~~---ad~~llVvD~~~~~~~~~~~~~~~------~~~~~~~~iIvviNK~ 140 (208)
T cd04166 76 KRKFIIADTPGHEQY------TRNMVTGAST---ADLAILLVDARKGVLEQTRRHSYI------LSLLGIRHVVVAVNKM 140 (208)
T ss_pred CceEEEEECCcHHHH------HHHHHHhhhh---CCEEEEEEECCCCccHhHHHHHHH------HHHcCCCcEEEEEEch
Confidence 568999999996431 1223333433 4789999999753221 2212111 123454 467799999
Q ss_pred ccccchhh-hhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC--ceEEEEeccCcccHHH
Q 023298 192 DLVTNKKE-IEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRY 255 (284)
Q Consensus 192 Dll~~~~~-l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~--~~~ipiSa~~~~~l~~ 255 (284)
|+.....+ +... ...+.+++..+++ ..++|+||++|.|+.+
T Consensus 141 D~~~~~~~~~~~i-----------------------~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 141 DLVDYSEEVFEEI-----------------------VADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred hcccCCHHHHHHH-----------------------HHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 98642201 1111 1122233344453 5699999999999875
No 108
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.25 E-value=1.6e-10 Score=96.56 Aligned_cols=111 Identities=13% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++-++||||+... ..+.+..- ..++++++++|+.. +..| +..++..+......+.|.++|.||+|
T Consensus 51 ~~~~i~D~~G~~~~-------~~~~~~~~--~~~~~ii~v~d~~~---~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~D 118 (166)
T cd01869 51 IKLQIWDTAGQERF-------RTITSSYY--RGAHGIIIVYDVTD---QESFNNVKQWLQEIDRYASENVNKLLVGNKCD 118 (166)
T ss_pred EEEEEEECCCcHhH-------HHHHHHHh--CcCCEEEEEEECcC---HHHHHhHHHHHHHHHHhCCCCCcEEEEEEChh
Confidence 36789999996431 11222221 12468999999863 3333 44454444333334689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+..++ .+.. . . . .+....++ ..++++||++|+|+++++..|.+.+
T Consensus 119 l~~~~-~~~~-~-----~----~---------------~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 119 LTDKR-VVDY-S-----E----A---------------QEFADELG-IPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred ccccc-CCCH-H-----H----H---------------HHHHHHcC-CeEEEEECCCCcCHHHHHHHHHHHH
Confidence 86433 2110 0 0 0 01112233 5799999999999999999998765
No 109
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.25 E-value=9.9e-11 Score=98.85 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=67.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.++||||+.+.. ....+.+.. .+++++++|+....+...+ ..+ ......++|+++|+||+|+
T Consensus 66 ~~~~~l~Dt~G~~~~~------~~~~~~~~~---ad~~i~v~D~~~~~~~~~~-~~~----~~~~~~~~~iiiv~NK~Dl 131 (179)
T cd01890 66 EYLLNLIDTPGHVDFS------YEVSRSLAA---CEGALLLVDATQGVEAQTL-ANF----YLALENNLEIIPVINKIDL 131 (179)
T ss_pred cEEEEEEECCCChhhH------HHHHHHHHh---cCeEEEEEECCCCccHhhH-HHH----HHHHHcCCCEEEEEECCCC
Confidence 4467899999986521 112233433 3678999998753222221 111 1122467899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.... ..... . .+++.+. .....++++||++|+|+++|++.+.+.+|
T Consensus 132 ~~~~--~~~~~--------~---------------~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 132 PSAD--PERVK--------Q---------------QIEDVLG-LDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CcCC--HHHHH--------H---------------HHHHHhC-CCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 5321 11000 0 1111111 12246899999999999999999988764
No 110
>PLN03127 Elongation factor Tu; Provisional
Probab=99.25 E-value=3.2e-10 Score=110.81 Aligned_cols=115 Identities=20% Similarity=0.280 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCE-EEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPH-VNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~-IlVlNK~ 191 (284)
+.+++|+||||+.. ....+...+. ..+++++++|+...-.+ ...+.. .....+.|+ |+|+||+
T Consensus 123 ~~~i~~iDtPGh~~------f~~~~~~g~~---~aD~allVVda~~g~~~qt~e~l~------~~~~~gip~iIvviNKi 187 (447)
T PLN03127 123 KRHYAHVDCPGHAD------YVKNMITGAA---QMDGGILVVSAPDGPMPQTKEHIL------LARQVGVPSLVVFLNKV 187 (447)
T ss_pred CeEEEEEECCCccc------hHHHHHHHHh---hCCEEEEEEECCCCCchhHHHHHH------HHHHcCCCeEEEEEEee
Confidence 56899999999643 2333333332 25789999999754222 222222 233578896 6889999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC----CceEEEEecc---Cccc-------HHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLR---KESS-------IRYVL 257 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~----~~~~ipiSa~---~~~~-------l~~Ll 257 (284)
|++.++ +..+.++ ..+.+++..++ ...|+|+|+. +|.| +..|+
T Consensus 188 Dlv~~~-~~~~~i~----------------------~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll 244 (447)
T PLN03127 188 DVVDDE-ELLELVE----------------------MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLM 244 (447)
T ss_pred ccCCHH-HHHHHHH----------------------HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHH
Confidence 997543 3222211 11122233322 2578888875 5555 78999
Q ss_pred HHHHHhcCC
Q 023298 258 SQIDNCIQW 266 (284)
Q Consensus 258 ~~I~~~l~~ 266 (284)
+.+++.+|.
T Consensus 245 ~~l~~~lp~ 253 (447)
T PLN03127 245 DAVDEYIPE 253 (447)
T ss_pred HHHHHhCCC
Confidence 999998863
No 111
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.25 E-value=2.1e-10 Score=100.16 Aligned_cols=124 Identities=13% Similarity=0.146 Sum_probs=69.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH---hcCCCEEEEe
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV---QLELPHVNIL 188 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~---~~~~p~IlVl 188 (284)
.++.++||||+.. +.. ..+..... ........+++++++|+. ++..| +..+...+.... ..+.|+++|.
T Consensus 49 ~~l~i~Dt~G~~~-~~~-~~~~e~~~~~~~~~~~ad~iilv~D~~---~~~S~~~~~~~~~~i~~~~~~~~~~~piiivg 123 (198)
T cd04142 49 YDLHILDVPNMQR-YPG-TAGQEWMDPRFRGLRNSRAFILVYDIC---SPDSFHYVKLLRQQILETRPAGNKEPPIVVVG 123 (198)
T ss_pred EEEEEEeCCCccc-CCc-cchhHHHHHHHhhhccCCEEEEEEECC---CHHHHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 4678999999753 211 11222111 111223357899999986 34443 333322222222 2468999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH-hcCCC
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN-CIQWG 267 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~-~l~~g 267 (284)
||+|+...+ .... +.+ .++........++++||++|.|+++|++.+.+ ++..|
T Consensus 124 NK~Dl~~~~-~~~~------~~~-------------------~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 124 NKRDQQRHR-FAPR------HVL-------------------SVLVRKSWKCGYLECSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred ECccccccc-cccH------HHH-------------------HHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 999995432 1100 000 01111112367999999999999999998874 44444
Q ss_pred CC
Q 023298 268 ED 269 (284)
Q Consensus 268 ~d 269 (284)
+-
T Consensus 178 ~~ 179 (198)
T cd04142 178 RS 179 (198)
T ss_pred CC
Confidence 44
No 112
>PRK12735 elongation factor Tu; Reviewed
Probab=99.25 E-value=2.3e-10 Score=110.13 Aligned_cols=116 Identities=18% Similarity=0.299 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEE-EEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~I-lVlNK~D 192 (284)
+.++.|+||||+.+ ....+...+ ...+++++++|+...-.+... . .+......+.|++ +|+||+|
T Consensus 74 ~~~i~~iDtPGh~~------f~~~~~~~~---~~aD~~llVvda~~g~~~qt~--e---~l~~~~~~gi~~iivvvNK~D 139 (396)
T PRK12735 74 NRHYAHVDCPGHAD------YVKNMITGA---AQMDGAILVVSAADGPMPQTR--E---HILLARQVGVPYIVVFLNKCD 139 (396)
T ss_pred CcEEEEEECCCHHH------HHHHHHhhh---ccCCEEEEEEECCCCCchhHH--H---HHHHHHHcCCCeEEEEEEecC
Confidence 45899999999632 122233223 335789999999753222211 1 1112335688977 5799999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCc----------ccHHHHHH
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKE----------SSIRYVLS 258 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~----------~~l~~Ll~ 258 (284)
++.++ +..+.+. ..+..++..+++ ..|+|+||.+| .++..|++
T Consensus 140 l~~~~-~~~~~~~----------------------~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~ 196 (396)
T PRK12735 140 MVDDE-ELLELVE----------------------MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMD 196 (396)
T ss_pred CcchH-HHHHHHH----------------------HHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHH
Confidence 97533 2222211 122334444443 67999999998 47899999
Q ss_pred HHHHhcCC
Q 023298 259 QIDNCIQW 266 (284)
Q Consensus 259 ~I~~~l~~ 266 (284)
.++..+|.
T Consensus 197 ~l~~~~~~ 204 (396)
T PRK12735 197 AVDSYIPE 204 (396)
T ss_pred HHHhcCCC
Confidence 99998763
No 113
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.25 E-value=7.4e-11 Score=97.64 Aligned_cols=112 Identities=13% Similarity=0.184 Sum_probs=65.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+... ..+... ++. .+++++++|+....+... +..++..+......+.|+++|+||+|+
T Consensus 49 ~~l~~~D~~G~~~~-------~~~~~~~~~~---~~~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~iilv~nK~D~ 117 (161)
T cd01861 49 VRLQLWDTAGQERF-------RSLIPSYIRD---SSVAVVVYDITNRQSFDN-TDKWIDDVRDERGNDVIIVLVGNKTDL 117 (161)
T ss_pred EEEEEEECCCcHHH-------HHHHHHHhcc---CCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCCCCEEEEEEEChhc
Confidence 36789999996541 122222 222 467889999864322222 333333222212225899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
..+.....+.. .......+ ..++++||++++|++++++.|.+.+
T Consensus 118 ~~~~~~~~~~~--------------------------~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 118 SDKRQVSTEEG--------------------------EKKAKELN-AMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred cccCccCHHHH--------------------------HHHHHHhC-CEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 53220111100 01112233 6799999999999999999997753
No 114
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.24 E-value=1.7e-10 Score=96.09 Aligned_cols=109 Identities=15% Similarity=0.201 Sum_probs=65.0
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.+.++||||+.. ...+.+. +.. .+.+++++|+. ++..+ +..++..+......+.|.++|.||+|
T Consensus 53 ~~~l~D~~g~~~-------~~~~~~~~~~~---~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~D 119 (165)
T cd01868 53 KAQIWDTAGQER-------YRAITSAYYRG---AVGALLVYDIT---KKQTFENVERWLKELRDHADSNIVIMLVGNKSD 119 (165)
T ss_pred EEEEEeCCChHH-------HHHHHHHHHCC---CCEEEEEEECc---CHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 578999999643 1112222 222 46788899986 33333 33343333232333689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+...+ ....- .. ..+.... ...++++||++|.|++.+++.+.+.+
T Consensus 120 l~~~~-~~~~~------------------~~-------~~~~~~~-~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 120 LRHLR-AVPTE------------------EA-------KAFAEKN-GLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ccccc-cCCHH------------------HH-------HHHHHHc-CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 86432 11000 00 0111122 25799999999999999999987654
No 115
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.24 E-value=8.9e-11 Score=98.08 Aligned_cols=113 Identities=11% Similarity=0.190 Sum_probs=67.0
Q ss_pred CEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH----hcCCCEEEEecC
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV----QLELPHVNILSK 190 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~----~~~~p~IlVlNK 190 (284)
++.++||||+... ..+.. .++. ++++++++|+....+... +..+...+.... ..+.|.++|+||
T Consensus 50 ~~~~~D~~g~~~~-------~~~~~~~~~~---~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (172)
T cd01862 50 TLQIWDTAGQERF-------QSLGVAFYRG---ADCCVLVYDVTNPKSFES-LDSWRDEFLIQASPSDPENFPFVVLGNK 118 (172)
T ss_pred EEEEEeCCChHHH-------HhHHHHHhcC---CCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCccCCCCceEEEEEEC
Confidence 5678999996431 11212 2322 467899999864321111 112222111111 126899999999
Q ss_pred Cccccchhhh-hhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 191 MDLVTNKKEI-EDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 191 ~Dll~~~~~l-~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+|+..++ .. .+. +..+.+..+...++++|+++|.|++.+++.|.+.+.+
T Consensus 119 ~Dl~~~~-~~~~~~--------------------------~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 119 IDLEEKR-QVSTKK--------------------------AQQWCQSNGNIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred ccccccc-ccCHHH--------------------------HHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9997422 11 110 0122345566899999999999999999998876543
No 116
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.24 E-value=2.5e-10 Score=95.77 Aligned_cols=110 Identities=15% Similarity=0.247 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+.+.||||+... ..+.. .++. ++++++++|+.. +..| +..++..+......+.|.++|.||+
T Consensus 52 ~~l~l~D~~g~~~~-------~~~~~~~~~~---ad~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~ 118 (167)
T cd01867 52 IKLQIWDTAGQERF-------RTITTAYYRG---AMGIILVYDITD---EKSFENIRNWMRNIEEHASEDVERMLVGNKC 118 (167)
T ss_pred EEEEEEeCCchHHH-------HHHHHHHhCC---CCEEEEEEECcC---HHHHHhHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 35789999996431 11222 2322 468999999853 3333 4445444433333568999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+.... .... +.. .+....++ ..++++||++|.|++++++.+.+.+
T Consensus 119 Dl~~~~-~~~~------~~~-------------------~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 119 DMEEKR-VVSK------EEG-------------------EALADEYG-IKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred cccccc-CCCH------HHH-------------------HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 996432 1110 000 11112333 4789999999999999999888754
No 117
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.24 E-value=1.5e-10 Score=106.69 Aligned_cols=159 Identities=18% Similarity=0.277 Sum_probs=111.0
Q ss_pred EECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhcHH
Q 023298 24 VFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDNLD 102 (284)
Q Consensus 24 viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~~~ 102 (284)
++|-| +||||+-..|+. .-|....++++ .+-|+-+.+.
T Consensus 201 LVG~PNAGKSTLL~als~-------------AKpkVa~YaFT------------------TL~P~iG~v~---------- 239 (366)
T KOG1489|consen 201 LVGFPNAGKSTLLNALSR-------------AKPKVAHYAFT------------------TLRPHIGTVN---------- 239 (366)
T ss_pred eecCCCCcHHHHHHHhhc-------------cCCccccccee------------------eeccccceee----------
Confidence 78999 999999999988 55666655442 2335432211
Q ss_pred HHHHHHhhccCCCCEEEEeCCCCcccc-cccchHHHHHHHHHhcCCCeEEEEEecCCCC--CCHHHHHHHHHHHHHHHHh
Q 023298 103 DWLAEELDNYLDDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQ 179 (284)
Q Consensus 103 ~~l~~~l~~~~~~~~viiDtPg~~e~~-~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~--~~~~~~i~~~l~~l~~~~~ 179 (284)
.+. ..|+.+.|.||.++.. ..+..+..|+++++.+ ...+|++|.+.. .+|.+.+..+...+..+-+
T Consensus 240 ------ydd--f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~---~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek 308 (366)
T KOG1489|consen 240 ------YDD--FSQITVADIPGIIEGAHMNKGLGYKFLRHIERC---KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK 308 (366)
T ss_pred ------ccc--cceeEeccCccccccccccCcccHHHHHHHHhh---ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh
Confidence 111 2358999999999874 5667788999999864 478999999865 3566666666666666644
Q ss_pred --cCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHH
Q 023298 180 --LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVL 257 (284)
Q Consensus 180 --~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll 257 (284)
..+|+++|.||+|+...+ +++++ ++.+......++|+||+.++++..|+
T Consensus 309 ~L~~rp~liVaNKiD~~eae---~~~l~--------------------------~L~~~lq~~~V~pvsA~~~egl~~ll 359 (366)
T KOG1489|consen 309 GLADRPALIVANKIDLPEAE---KNLLS--------------------------SLAKRLQNPHVVPVSAKSGEGLEELL 359 (366)
T ss_pred hhccCceEEEEeccCchhHH---HHHHH--------------------------HHHHHcCCCcEEEeeeccccchHHHH
Confidence 578999999999985322 11111 11122223479999999999999999
Q ss_pred HHHHHh
Q 023298 258 SQIDNC 263 (284)
Q Consensus 258 ~~I~~~ 263 (284)
..+.+.
T Consensus 360 ~~lr~~ 365 (366)
T KOG1489|consen 360 NGLREL 365 (366)
T ss_pred HHHhhc
Confidence 988654
No 118
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.24 E-value=1.2e-10 Score=99.59 Aligned_cols=150 Identities=16% Similarity=0.242 Sum_probs=78.7
Q ss_pred EEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccc-c-cccccc-HHHHhhhcCcccCchhhhhhHhhh
Q 023298 23 CVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAM-D-IRELIS-LEDVMEELGLGPNGGLIYCMEHLE 98 (284)
Q Consensus 23 ~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~-d-ir~~i~-~~~vm~~~~lgPng~l~~~~e~~~ 98 (284)
++-+.| +||||+|.+||.+|+++|++|++||+|||++.+.+-... + .++... ....+..+. .+.+...-+.
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-- 77 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAILKNFE---SQDIYQGEEY-- 77 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCHHESCC---HHHHHHHCHC--
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhhhhccc---hhhhhhhhhh--
Confidence 344457 999999999999999999999999999999864321101 0 000000 000000000 0000000000
Q ss_pred hcHHHHHHHHhhccC--CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 023298 99 DNLDDWLAEELDNYL--DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 176 (284)
Q Consensus 99 ~~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~ 176 (284)
.....+++.++.+. .++||||||||..... ....+.. ++.++..+++. +.. +......+..
T Consensus 78 -~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~--------~~~~l~~---ad~viv~~~~~----~~~-i~~~~~~~~~ 140 (195)
T PF01656_consen 78 -LDPELLREILESLIKSDYDYIIIDTPPGLSDP--------VRNALAA---ADYVIVPIEPD----PSS-IEGAERLIEL 140 (195)
T ss_dssp -HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHH--------HHHHHHT---SSEEEEEEESS----HHH-HHHHHHHHHH
T ss_pred -hHHHHHHHHHHHhhhccccceeecccccccHH--------HHHHHHh---CceeeeecCCc----HHH-HHHHHHHHHH
Confidence 00112333333211 4899999999976522 2233433 35566667663 322 4444444455
Q ss_pred HHhcCC---CEEEEecCCccc
Q 023298 177 MVQLEL---PHVNILSKMDLV 194 (284)
Q Consensus 177 ~~~~~~---p~IlVlNK~Dll 194 (284)
+.+.+. ...+|+||++.-
T Consensus 141 l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 141 LKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp HHHHTHTEEEEEEEEEEETSC
T ss_pred HHHhccccceEEEEEeeeCCC
Confidence 555552 457899999764
No 119
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.23 E-value=4.2e-10 Score=102.49 Aligned_cols=138 Identities=13% Similarity=0.147 Sum_probs=83.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHH-HHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~-~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++++.++||||+... .....+.+.. .+.+++++|+....... ..+. ......+.|.++|+||+|
T Consensus 63 ~~~i~liDtPG~~~f------~~~~~~~l~~---aD~~i~Vvd~~~g~~~~~~~~~------~~~~~~~~p~iivvNK~D 127 (268)
T cd04170 63 GHKINLIDTPGYADF------VGETRAALRA---ADAALVVVSAQSGVEVGTEKLW------EFADEAGIPRIIFINKMD 127 (268)
T ss_pred CEEEEEEECcCHHHH------HHHHHHHHHH---CCEEEEEEeCCCCCCHHHHHHH------HHHHHcCCCEEEEEECCc
Confidence 567899999997541 1223344443 36788899987543322 2122 223456899999999999
Q ss_pred cccchh-----hhhhhcCc---------------------------------------chH-----------HHHHHhhh
Q 023298 193 LVTNKK-----EIEDYLNP---------------------------------------ESQ-----------FLLSELNQ 217 (284)
Q Consensus 193 ll~~~~-----~l~~~l~~---------------------------------------~~~-----------~l~~~l~~ 217 (284)
+..... .+.+.+.. -++ .|.+.+.+
T Consensus 128 ~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~ 207 (268)
T cd04170 128 RERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEAREELLEAVAE 207 (268)
T ss_pred cCCCCHHHHHHHHHHHhCCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHHHHHHHHHHhh
Confidence 864311 11111000 001 12222222
Q ss_pred cchh-----------HHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 218 HMAP-----------QFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 218 ~~~~-----------~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
.... ....+...+.+.+..-.+..+++.||+++.|++.|++.+.+++|.
T Consensus 208 ~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~ 267 (268)
T cd04170 208 TDDELMEKYLEGGELTEEELHAGLRRALRAGLLVPVLCGSALTNIGVRELLDALVHLLPS 267 (268)
T ss_pred CCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCC
Confidence 1111 122456666777777778899999999999999999999999874
No 120
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.23 E-value=2.4e-10 Score=97.57 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=29.9
Q ss_pred EEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 23 CVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 23 ~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
++-|.| +||||++.|||..| +||++||+|+|....
T Consensus 4 v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~ 39 (179)
T cd03110 4 VISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNL 39 (179)
T ss_pred EEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCch
Confidence 444557 99999999999999 799999999997643
No 121
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.23 E-value=5.6e-10 Score=91.78 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=68.9
Q ss_pred CEEEEeCCCCcccccccch----HHHHHHHHHhcCCCeEEEEEecCCCCCCHH-HHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 116 DYLVFDCPGQIELFTHVPV----LRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~----~~~l~~~l~~~d~~~vil~LiDa~~~~~~~-~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
++.++||||.......... ...+...+...+....+++++|........ ..+.. .+...+.|+++|+||
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~------~l~~~~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLD------WLEELGIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHH------HHHHcCCCEEEEEEc
Confidence 7899999996542111111 111222333222234677888886442222 21222 233457899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHh-ccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD-EYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~-~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+.... +..... ..+...++ ......++|+|++++.++.++++.|.+.+
T Consensus 120 ~D~~~~~-~~~~~~-----------------------~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 120 ADKLKKS-ELAKAL-----------------------KEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred hhcCChH-HHHHHH-----------------------HHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 9987543 222111 01112222 23446899999999999999999998753
No 122
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.23 E-value=1.9e-11 Score=113.27 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=40.2
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFD 62 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~ 62 (284)
+++.+.|.|.| +||||+|.|||..|++.|+||++||+|||++.+.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~ 48 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTR 48 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccccccccc
Confidence 45666677999 9999999999999999999999999999998653
No 123
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.22 E-value=8.1e-11 Score=104.19 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=60.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC-----H-HHHHHHHHHHHHHHHhcC-CCEEE
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-----V-TKFISGCMASLSAMVQLE-LPHVN 186 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~-----~-~~~i~~~l~~l~~~~~~~-~p~Il 186 (284)
+..+.++||||+... ...+...+. ..+++++++|+..... . ...... +......+ +|+|+
T Consensus 76 ~~~i~liDtpG~~~~------~~~~~~~~~---~~d~~i~VvDa~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~iii 142 (219)
T cd01883 76 KYRFTILDAPGHRDF------VPNMITGAS---QADVAVLVVDARKGEFEAGFEKGGQTREH----ALLARTLGVKQLIV 142 (219)
T ss_pred CeEEEEEECCChHHH------HHHHHHHhh---hCCEEEEEEECCCCccccccccccchHHH----HHHHHHcCCCeEEE
Confidence 567899999996431 122333332 3578999999975210 0 011111 11122444 67888
Q ss_pred EecCCccccc---hhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcccHH
Q 023298 187 ILSKMDLVTN---KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR 254 (284)
Q Consensus 187 VlNK~Dll~~---~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~l~ 254 (284)
|+||+|+... +..+.. +...+.+.+..+++ ..|+|+||++|+|++
T Consensus 143 vvNK~Dl~~~~~~~~~~~~-----------------------i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 143 AVNKMDDVTVNWSEERYDE-----------------------IKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEccccccccccHHHHHH-----------------------HHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9999998732 101111 11222334455444 579999999999987
No 124
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.22 E-value=3.3e-10 Score=97.25 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH-HHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l-~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+.. .+.+... +.. .++++|++|+....+-.. ....+..+ ..-.....|+++|.||.
T Consensus 60 ~~~~~l~D~~G~~~-------~~~~~~~~~~~---ad~iI~v~D~t~~~s~~~-~~~~l~~~~~~~~~~~~piilv~NK~ 128 (182)
T PTZ00133 60 NLKFTMWDVGGQDK-------LRPLWRHYYQN---TNGLIFVVDSNDRERIGD-AREELERMLSEDELRDAVLLVFANKQ 128 (182)
T ss_pred CEEEEEEECCCCHh-------HHHHHHHHhcC---CCEEEEEEeCCCHHHHHH-HHHHHHHHHhCHhhcCCCEEEEEeCC
Confidence 44789999999743 1112222 222 468999999864321111 11111111 10011358999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+.... ...+.. ..+.. ..+.. ....++++||++|+|++++++.|.+.+
T Consensus 129 Dl~~~~-~~~~i~--------~~l~~--------------~~~~~-~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 129 DLPNAM-STTEVT--------EKLGL--------------HSVRQ-RNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCCC-CHHHHH--------HHhCC--------------CcccC-CcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 984321 111110 00000 00011 123467899999999999999987654
No 125
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.22 E-value=1.6e-10 Score=94.26 Aligned_cols=104 Identities=11% Similarity=0.146 Sum_probs=59.9
Q ss_pred EEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccch
Q 023298 118 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 118 viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
.++||||+.- .+......+...+.. .+++++++|+....+... ..+.. ..+.|.++|+||+|+....
T Consensus 38 ~~iDt~G~~~--~~~~~~~~~~~~~~~---ad~vilv~d~~~~~s~~~--~~~~~------~~~~p~ilv~NK~Dl~~~~ 104 (142)
T TIGR02528 38 GAIDTPGEYV--ENRRLYSALIVTAAD---ADVIALVQSATDPESRFP--PGFAS------IFVKPVIGLVTKIDLAEAD 104 (142)
T ss_pred eeecCchhhh--hhHHHHHHHHHHhhc---CCEEEEEecCCCCCcCCC--hhHHH------hccCCeEEEEEeeccCCcc
Confidence 5789999732 111112222233322 468999999865432111 01111 1245999999999986422
Q ss_pred hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 198 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 198 ~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
...+. ..+..+..+...++++||++|+|++++++.+.
T Consensus 105 -~~~~~--------------------------~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 105 -VDIER--------------------------AKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred -cCHHH--------------------------HHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 10000 01222344556799999999999999998763
No 126
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.22 E-value=1.8e-10 Score=106.84 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=37.8
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFD 62 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~ 62 (284)
.+.|+|.| +||||++.|||.+|+++|+||++||+|||.+.+.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~ 44 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTS 44 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccc
Confidence 35566999 9999999999999999999999999999998543
No 127
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.21 E-value=4.6e-10 Score=96.20 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=65.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHH-HHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS-AMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~-~~~~~~~p~IlVlNK~Dl 193 (284)
..+.+.||||+-.. ..+....- ..+++++|++|+....+... +..++..+. .....++|+++|+||+|+
T Consensus 52 ~~l~l~Dt~G~~~~-------~~~~~~~~--~~~d~ii~v~D~~~~~~~~~-~~~~~~~i~~~~~~~~~p~iiv~NK~D~ 121 (183)
T cd04152 52 ITFHFWDVGGQEKL-------RPLWKSYT--RCTDGIVFVVDSVDVERMEE-AKTELHKITRFSENQGVPVLVLANKQDL 121 (183)
T ss_pred eEEEEEECCCcHhH-------HHHHHHHh--ccCCEEEEEEECCCHHHHHH-HHHHHHHHHhhhhcCCCcEEEEEECcCc
Confidence 46789999996431 11222221 12468999999864322211 122222221 223357999999999998
Q ss_pred ccch--hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 194 VTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.... .++..++. ++ + +.......++|+||++|+|+++++..|.+.+
T Consensus 122 ~~~~~~~~~~~~~~---------~~---------------~-~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 122 PNALSVSEVEKLLA---------LH---------------E-LSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred cccCCHHHHHHHhC---------cc---------------c-cCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 5321 01111110 00 0 0011124689999999999999999888765
No 128
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.21 E-value=2.5e-10 Score=94.47 Aligned_cols=113 Identities=12% Similarity=0.198 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.++||||+... ..+.+..-+ ..+++++++|+....+... +..++..+......+.|.++|.||+|+.
T Consensus 49 ~~~~l~D~~G~~~~-------~~~~~~~~~--~~d~~ilv~d~~~~~s~~~-~~~~l~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 49 VKLQIWDTAGQERF-------RSITSSYYR--GAVGALLVYDITNRESFEN-LKNWLKELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEEEEECCChHHH-------HHHHHHHhC--CCCEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence 36789999996431 112222211 2468999999864322221 3334443333333478999999999976
Q ss_pred cchhhhh-hhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 195 TNKKEIE-DYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 195 ~~~~~l~-~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.. ... +.. .+....++ ..++++|+++|.|++++++.|.+.+.
T Consensus 119 ~~~-~~~~~~~--------------------------~~~~~~~~-~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 119 DQR-QVSREEA--------------------------EAFAEEHG-LPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred ccc-CCCHHHH--------------------------HHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 422 111 000 11123344 46999999999999999999988764
No 129
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.21 E-value=2.4e-10 Score=97.56 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=60.6
Q ss_pred CEEEEeCCCCcccccccc---hHHHHH-HHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 116 DYLVFDCPGQIELFTHVP---VLRNFV-DHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~---~~~~l~-~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
++.++||||+........ ....++ ..+...+..+++++++|+...... ...+.. .+...++|+++|+||
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~------~~~~~~~pviiv~nK 138 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLE------WLRERGIPVLIVLTK 138 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHH------HHHHcCCCEEEEEEC
Confidence 689999999654221111 111222 223332223578999998753222 222212 223468999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHH
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIR 254 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~ 254 (284)
+|+.... +.....+ .+.+.+...+ ..+++++||++|+|++
T Consensus 139 ~D~~~~~-~~~~~~~-----------------------~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 139 ADKLKKS-ELNKQLK-----------------------KIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cccCCHH-HHHHHHH-----------------------HHHHHHhhccCCCceEEEECCCCCCCC
Confidence 9987533 2222211 1122223333 2489999999999973
No 130
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.21 E-value=3.8e-10 Score=92.89 Aligned_cols=110 Identities=13% Similarity=0.190 Sum_probs=62.0
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~Dl 193 (284)
.+-++||||+-+. ..+... +.. .+.+++++|.....+... +..+...+.... ..+.|+++|.||+|+
T Consensus 50 ~~~i~Dt~G~~~~-------~~l~~~~~~~---~~~~i~v~~~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~Dl 118 (162)
T cd04138 50 LLDILDTAGQEEY-------SAMRDQYMRT---GEGFLCVFAINSRKSFED-IHTYREQIKRVKDSDDVPMVLVGNKCDL 118 (162)
T ss_pred EEEEEECCCCcch-------HHHHHHHHhc---CCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3567999997541 123222 333 345677777653221111 222322222222 247899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
..+.....+. .+....++ ..++++||++|.|++++++.+.+.+
T Consensus 119 ~~~~~~~~~~---------------------------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 119 AARTVSSRQG---------------------------QDLAKSYG-IPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred ccceecHHHH---------------------------HHHHHHhC-CeEEEecCCCCCCHHHHHHHHHHHh
Confidence 6422000000 01112222 4789999999999999999987653
No 131
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.20 E-value=3.5e-10 Score=93.50 Aligned_cols=114 Identities=12% Similarity=0.107 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH---HHhcCCCEEEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA---MVQLELPHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~---~~~~~~p~IlVlN 189 (284)
+..+.++||||+.... .+.+ .+.. .++++|++|+....+... ....+..+.. +...++|+++|+|
T Consensus 44 ~~~~~l~Dt~G~~~~~-------~~~~~~~~~---~d~ii~v~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~N 112 (162)
T cd04157 44 NLSFTAFDMSGQGKYR-------GLWEHYYKN---IQGIIFVIDSSDRLRLVV-VKDELELLLNHPDIKHRRVPILFFAN 112 (162)
T ss_pred CEEEEEEECCCCHhhH-------HHHHHHHcc---CCEEEEEEeCCcHHHHHH-HHHHHHHHHcCcccccCCCCEEEEEe
Confidence 3467899999975411 1212 2322 467999999863321111 1122221111 1124799999999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
|+|+.... ...++. ..+.. .+. ......++++||++|.|++++++.|.+
T Consensus 113 K~Dl~~~~-~~~~~~--------~~l~~-------------~~~--~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 113 KMDLPDAL-TAVKIT--------QLLGL-------------ENI--KDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CccccCCC-CHHHHH--------HHhCC-------------ccc--cCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 99986432 111111 00000 000 011246899999999999999988753
No 132
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.20 E-value=5.4e-10 Score=92.95 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=67.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+.... .+.. .+. ..+++++++|+.....+..+- .+..+.+.++|.++|+||+|
T Consensus 49 ~~~~~iiDtpG~~~~~-------~~~~~~~~---~~d~il~v~d~~~~~~~~~~~-----~~~~~~~~~~p~ivv~NK~D 113 (168)
T cd01887 49 IPGITFIDTPGHEAFT-------NMRARGAS---LTDIAILVVAADDGVMPQTIE-----AIKLAKAANVPFIVALNKID 113 (168)
T ss_pred cceEEEEeCCCcHHHH-------HHHHHHHh---hcCEEEEEEECCCCccHHHHH-----HHHHHHHcCCCEEEEEEcee
Confidence 4578999999974311 1211 122 246789999997543333221 11223457899999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.... ...+. ..+. .+. ....+..+ ...++++|+++|+|+.+|++.|.+...
T Consensus 114 l~~~~--~~~~~--------~~~~--------~~~---~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 114 KPNAN--PERVK--------NELS--------ELG---LQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ccccc--HHHHH--------HHHH--------Hhh---ccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 86421 11111 0000 000 00001112 357999999999999999999987643
No 133
>PRK04213 GTP-binding protein; Provisional
Probab=99.20 E-value=3.3e-10 Score=98.02 Aligned_cols=123 Identities=16% Similarity=0.269 Sum_probs=65.4
Q ss_pred CEEEEeCCCCcccccccch-HHHH----HHHHH-hcCCCeEEEEEecCCCCCCH-HHH-----HHHHHHHHHHHHhcCCC
Q 023298 116 DYLVFDCPGQIELFTHVPV-LRNF----VDHLK-SRNFNVCAVYLLDSQFITDV-TKF-----ISGCMASLSAMVQLELP 183 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~-~~~l----~~~l~-~~d~~~vil~LiDa~~~~~~-~~~-----i~~~l~~l~~~~~~~~p 183 (284)
++.++||||.-........ ..++ ...+. .++..+++++++|+....+. ..+ +..-......+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 5799999995221111110 1112 11222 23445788999998643211 000 00000001122245899
Q ss_pred EEEEecCCccccchh-hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhc---cC--CceEEEEeccCcccHHHHH
Q 023298 184 HVNILSKMDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE---YS--MVSFMPLDLRKESSIRYVL 257 (284)
Q Consensus 184 ~IlVlNK~Dll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~---~~--~~~~ipiSa~~~~~l~~Ll 257 (284)
+++|+||+|+..+.. ...++ ++.+.. +. ...++++||++| |+++++
T Consensus 133 ~iiv~NK~Dl~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~ 184 (201)
T PRK04213 133 PIVAVNKMDKIKNRDEVLDEI---------------------------AERLGLYPPWRQWQDIIAPISAKKG-GIEELK 184 (201)
T ss_pred eEEEEECccccCcHHHHHHHH---------------------------HHHhcCCccccccCCcEEEEecccC-CHHHHH
Confidence 999999999864320 01111 111110 10 125899999999 999999
Q ss_pred HHHHHhcCC
Q 023298 258 SQIDNCIQW 266 (284)
Q Consensus 258 ~~I~~~l~~ 266 (284)
+.|.+.+++
T Consensus 185 ~~l~~~~~~ 193 (201)
T PRK04213 185 EAIRKRLHE 193 (201)
T ss_pred HHHHHhhcC
Confidence 999988754
No 134
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.20 E-value=4.7e-10 Score=93.71 Aligned_cols=110 Identities=10% Similarity=0.189 Sum_probs=66.0
Q ss_pred CEEEEeCCCCcccccccchHHHH-HHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l-~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.+.+.||||+... ... ...+.. .+++++++|.....+.. .+..++..+......+.|.++|.||+|+.
T Consensus 57 ~~~~~D~~g~~~~-------~~~~~~~~~~---~d~~i~v~d~~~~~s~~-~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 57 KLQIWDTAGQERF-------RSITQSYYRS---ANALILTYDITCEESFR-CLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred EEEEEECCCcHHH-------HHHHHHHhcC---CCEEEEEEECcCHHHHH-HHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 4678899996431 111 122322 46799999985322111 13344444444444578999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
.+. ++..-. .+.+.......++++||++|.|+.++++.|.+.
T Consensus 126 ~~~-~i~~~~--------------------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 126 ERR-EVSQQR--------------------------AEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ccc-ccCHHH--------------------------HHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 433 221110 000111112679999999999999999998764
No 135
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.20 E-value=3.5e-10 Score=94.71 Aligned_cols=112 Identities=11% Similarity=0.147 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..+.+.||||+.... .+.... ....+++++++|+.. +..+ +..++..+......+.|+++|.||+|
T Consensus 50 ~~~~l~Dt~g~~~~~-------~~~~~~--~~~~~~~l~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piivv~nK~D 117 (165)
T cd01865 50 VKLQIWDTAGQERYR-------TITTAY--YRGAMGFILMYDITN---EESFNAVQDWSTQIKTYSWDNAQVILVGNKCD 117 (165)
T ss_pred EEEEEEECCChHHHH-------HHHHHH--ccCCcEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCCEEEEEECcc
Confidence 357899999965311 121211 122467899999863 3333 44454443333334689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+...+ ..... .. .++.+..+ ..++++||++|.|++++++.+.+.+.
T Consensus 118 l~~~~-~~~~~------------------~~-------~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 118 MEDER-VVSSE------------------RG-------RQLADQLG-FEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred cCccc-ccCHH------------------HH-------HHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 86533 11100 00 11112333 37999999999999999999987653
No 136
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.19 E-value=3.4e-10 Score=93.49 Aligned_cols=109 Identities=14% Similarity=0.230 Sum_probs=64.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK 190 (284)
..+.++||||+.+.. .+... ++. .+.+++++|.. ++..+ +..+...+..+. ..++|.++|+||
T Consensus 48 ~~~~i~D~~g~~~~~-------~~~~~~~~~---~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK 114 (164)
T cd04139 48 VQLNILDTAGQEDYA-------AIRDNYHRS---GEGFLLVFSIT---DMESFTATAEFREQILRVKDDDNVPLLLVGNK 114 (164)
T ss_pred EEEEEEECCChhhhh-------HHHHHHhhc---CCEEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEc
Confidence 368899999976421 12222 222 24677777765 33332 222322222221 257999999999
Q ss_pred Cccccchh-hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+..... ..... ......++ ..++++||++|+|++++++.+.+.+
T Consensus 115 ~D~~~~~~~~~~~~---------------------------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 115 CDLEDKRQVSSEEA---------------------------ANLARQWG-VPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred cccccccccCHHHH---------------------------HHHHHHhC-CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 99865220 01100 01112233 5799999999999999999988765
No 137
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.19 E-value=1.1e-09 Score=98.45 Aligned_cols=138 Identities=14% Similarity=0.195 Sum_probs=81.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+... .....+.+.. .+.+++++|+...... ...+.. ...+.++|.++++||+|
T Consensus 63 ~~~i~liDTPG~~~f------~~~~~~~l~~---aD~~IlVvd~~~g~~~~~~~~~~------~~~~~~~P~iivvNK~D 127 (237)
T cd04168 63 DTKVNLIDTPGHMDF------IAEVERSLSV---LDGAILVISAVEGVQAQTRILWR------LLRKLNIPTIIFVNKID 127 (237)
T ss_pred CEEEEEEeCCCccch------HHHHHHHHHH---hCeEEEEEeCCCCCCHHHHHHHH------HHHHcCCCEEEEEECcc
Confidence 568999999998652 1223344544 3578889998754222 222222 23356899999999999
Q ss_pred cccch-hh----hhhhcC-------------------cchHHHHHHhhhcchh-----------HHHHHHHHHHHHHhcc
Q 023298 193 LVTNK-KE----IEDYLN-------------------PESQFLLSELNQHMAP-----------QFAKLNKSLIELVDEY 237 (284)
Q Consensus 193 ll~~~-~~----l~~~l~-------------------~~~~~l~~~l~~~~~~-----------~~~~l~~~i~~~l~~~ 237 (284)
+.... .+ +.+.+. +-++.|.+.+.+.... ....+...+.+.+..-
T Consensus 128 ~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~ 207 (237)
T cd04168 128 RAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKR 207 (237)
T ss_pred ccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 86421 01 111000 0123344433321111 1234555555555555
Q ss_pred CCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 238 SMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 238 ~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
.+..++.-||.++.|+..|++.|.+++|.
T Consensus 208 ~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~ 236 (237)
T cd04168 208 KVFPVYHGSALKGIGIEELLEGITKLFPT 236 (237)
T ss_pred CeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence 45555555999999999999999999874
No 138
>PRK11670 antiporter inner membrane protein; Provisional
Probab=99.19 E-value=3.7e-10 Score=107.87 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=34.3
Q ss_pred ECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCC
Q 023298 25 FSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFD 62 (284)
Q Consensus 25 iG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~ 62 (284)
-|.| +||||++.|||..|++.|+||++||+|||+...+
T Consensus 114 S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~ 152 (369)
T PRK11670 114 SGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIP 152 (369)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcc
Confidence 3446 9999999999999999999999999999998653
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.19 E-value=4e-10 Score=90.93 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=60.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..+.++||||+.+.. .......+.. ...++.+|.... .+-..........+......+.|.++|+||+|+
T Consensus 50 ~~~~~~D~~G~~~~~---~~~~~~~~~~------~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 120 (161)
T TIGR00231 50 YKFNLLDTAGQEDYR---AIRRLYYRAV------ESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDL 120 (161)
T ss_pred EEEEEEECCCcccch---HHHHHHHhhh------hEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccC
Confidence 467899999965421 1111111111 233444444322 111111112222222222337899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
.... .... ..+.+...+...++|+||.++.|+..+++.|.
T Consensus 121 ~~~~--~~~~--------------------------~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 121 RDAK--LKTH--------------------------VAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred Ccch--hhHH--------------------------HHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 6532 1111 12223445556799999999999999998874
No 140
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.18 E-value=7e-10 Score=94.42 Aligned_cols=116 Identities=13% Similarity=0.125 Sum_probs=64.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~ 191 (284)
+..+.+.||||+... ..+.+. +.. .++++|++|++...+... ....+..+.... ..+.|+++|.||+
T Consensus 56 ~~~l~l~D~~G~~~~-------~~~~~~~~~~---ad~ii~v~D~t~~~s~~~-~~~~l~~~~~~~~~~~~piilv~NK~ 124 (175)
T smart00177 56 NISFTVWDVGGQDKI-------RPLWRHYYTN---TQGLIFVVDSNDRDRIDE-AREELHRMLNEDELRDAVILVFANKQ 124 (175)
T ss_pred CEEEEEEECCCChhh-------HHHHHHHhCC---CCEEEEEEECCCHHHHHH-HHHHHHHHhhCHhhcCCcEEEEEeCc
Confidence 346899999997541 123222 332 468999999863221111 112221111111 1257999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+.... ...++. +.+.. ..+. .....++++||++|+|+.++++.|.+.+
T Consensus 125 Dl~~~~-~~~~i~--------~~~~~--------------~~~~-~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 125 DLPDAM-KAAEIT--------EKLGL--------------HSIR-DRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CcccCC-CHHHHH--------HHhCc--------------cccC-CCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 985321 111111 00000 0001 1124688999999999999999987754
No 141
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.18 E-value=5.4e-10 Score=108.73 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=39.8
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
.+|..++++|++ |||||+|..||.+|.+.|++|++|++|+...
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 468999999999 9999999999999999999999999998653
No 142
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.18 E-value=5.7e-10 Score=92.29 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=64.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH-HHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l-~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+... ..+... +.. .+++++++|+....+... ....+..+ ......+.|+++|.||+
T Consensus 42 ~~~~~i~D~~G~~~~-------~~~~~~~~~~---~~~~i~v~D~~~~~~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~ 110 (158)
T cd00878 42 NVSFTVWDVGGQDKI-------RPLWKHYYEN---TNGIIFVVDSSDRERIEE-AKEELHKLLNEEELKGVPLLIFANKQ 110 (158)
T ss_pred CEEEEEEECCCChhh-------HHHHHHHhcc---CCEEEEEEECCCHHHHHH-HHHHHHHHHhCcccCCCcEEEEeecc
Confidence 347899999997642 112222 222 468999999974321111 11222111 11123578999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
|+.... ...+.. ..+.. .........++++||++|.|++++++.|.+
T Consensus 111 D~~~~~-~~~~~~--------~~~~~---------------~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 111 DLPGAL-SVSELI--------EKLGL---------------EKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCcccc-CHHHHH--------HhhCh---------------hhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 986532 121111 11100 001122468999999999999999988764
No 143
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.18 E-value=1.8e-10 Score=93.76 Aligned_cols=109 Identities=12% Similarity=0.201 Sum_probs=63.4
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+... ..+... +.. .+++++++|+....+ -..+..++..+......+.|.++|+||+|+
T Consensus 49 ~~~~l~D~~g~~~~-------~~~~~~~~~~---~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 117 (159)
T cd00154 49 VKLQIWDTAGQERF-------RSITPSYYRG---AHGAILVYDITNRES-FENLDKWLKELKEYAPENIPIILVGNKIDL 117 (159)
T ss_pred EEEEEEecCChHHH-------HHHHHHHhcC---CCEEEEEEECCCHHH-HHHHHHHHHHHHHhCCCCCcEEEEEEcccc
Confidence 46789999997431 112222 222 468999999864221 112333333222222245899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
........+.. .++.... ...++.+|++++.|++++++.|.
T Consensus 118 ~~~~~~~~~~~--------------------------~~~~~~~-~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 118 EDQRQVSTEEA--------------------------QQFAKEN-GLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cccccccHHHH--------------------------HHHHHHc-CCeEEEEecCCCCCHHHHHHHHh
Confidence 62220111000 1111222 36799999999999999998875
No 144
>PRK14974 cell division protein FtsY; Provisional
Probab=99.18 E-value=9.7e-10 Score=103.61 Aligned_cols=42 Identities=12% Similarity=-0.050 Sum_probs=38.7
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
.+|++++++|++ |||||++.+|+.+|...|++|++++.|+..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 358899999999 999999999999999999999999999764
No 145
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.18 E-value=8.5e-10 Score=106.26 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=35.0
Q ss_pred CCceEEEEeccCcccHHH-HHHHHHHhcCCCCCCCCCCC
Q 023298 238 SMVSFMPLDLRKESSIRY-VLSQIDNCIQWGEDADLKIK 275 (284)
Q Consensus 238 ~~~~~ipiSa~~~~~l~~-Ll~~I~~~l~~g~d~~~~~~ 275 (284)
++..++|+||+.+.++.. |.+.+.+++|+|+..++.+.
T Consensus 243 ~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ 281 (396)
T PRK09602 243 KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGE 281 (396)
T ss_pred CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcccc
Confidence 567899999999999999 99999999999999998765
No 146
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.18 E-value=3.4e-10 Score=94.33 Aligned_cols=111 Identities=11% Similarity=0.164 Sum_probs=64.0
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~Dl 193 (284)
.+.+.||||+.... . +.+. ++. .+++++++|.....+... +..++..+.... ..+.|+++|.||+|+
T Consensus 50 ~l~i~Dt~G~~~~~---~----~~~~~~~~---~d~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl 118 (164)
T cd04175 50 MLEILDTAGTEQFT---A----MRDLYMKN---GQGFVLVYSITAQSTFND-LQDLREQILRVKDTEDVPMILVGNKCDL 118 (164)
T ss_pred EEEEEECCCcccch---h----HHHHHHhh---CCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCcc
Confidence 45689999986422 1 2222 223 246778888753322211 223333222221 246899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.... ....- . ..++.+.++ ..++++||++|.|+++++..|.+.+
T Consensus 119 ~~~~-~~~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 119 EDER-VVGKE------Q-------------------GQNLARQWG-CAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred hhcc-EEcHH------H-------------------HHHHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 6432 11000 0 001112233 5799999999999999999987654
No 147
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.18 E-value=4.3e-10 Score=97.64 Aligned_cols=133 Identities=14% Similarity=0.193 Sum_probs=81.6
Q ss_pred CCCEEEEeCCCCccccc-ccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH--HhcCCCEEEEec
Q 023298 114 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM--VQLELPHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~-~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~--~~~~~p~IlVlN 189 (284)
+.++.+|||||..+... .......+.+.+. .....++++|++|+..++..+..+...+. .. .+.-.++++|++
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~---~~fg~~~~~~~ivv~T 124 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQ---ELFGEKVLDHTIVLFT 124 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHH---HHhChHhHhcEEEEEE
Confidence 55899999999876432 1123344555443 23446789999998875443433322222 11 122368999999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-----CceEEEEeccCcccHHHHHHHHHHhc
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-----MVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-----~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
++|.+... .+++++...... +..+++..+ |-+..+ |+.++.++.+|++.|++.+
T Consensus 125 ~~d~l~~~-~~~~~~~~~~~~-------------------l~~l~~~c~~r~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 125 RGDDLEGG-TLEDYLENSCEA-------------------LKRLLEKCGGRYVAFNNKAK-GEEQEQQVKELLAKVESMV 183 (196)
T ss_pred CccccCCC-cHHHHHHhccHH-------------------HHHHHHHhCCeEEEEeCCCC-cchhHHHHHHHHHHHHHHH
Confidence 99988765 666665422222 233344432 222334 5778999999999999999
Q ss_pred CC-CCCC
Q 023298 265 QW-GEDA 270 (284)
Q Consensus 265 ~~-g~d~ 270 (284)
++ |+..
T Consensus 184 ~~~~~~~ 190 (196)
T cd01852 184 KENGGKP 190 (196)
T ss_pred HhcCCCC
Confidence 97 5443
No 148
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.18 E-value=6.3e-10 Score=95.38 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=72.4
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.+.+.||||+... ..+.+.. ....+++++++|... +..| +..++..+........|.++|.||+|+
T Consensus 50 ~~~i~Dt~g~~~~-------~~~~~~~--~~~~d~iilv~d~~~---~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 50 KLQIWDTNGQERF-------RSLNNSY--YRGAHGYLLVYDVTD---QESFENLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEECCCcHHH-------HhhHHHH--ccCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 5678999996431 1122222 122468899999864 3333 444544444433345899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADLK 273 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~~~ 273 (284)
.+.. ...... . ....+..+ ..++.+||++|.|+++++..+.+.+.........
T Consensus 118 ~~~~-~v~~~~------------------~-------~~~~~~~~-~~~~evSa~~~~~i~~~f~~l~~~~~~~~~~~~~ 170 (188)
T cd04125 118 VNNK-VVDSNI------------------A-------KSFCDSLN-IPFFETSAKQSINVEEAFILLVKLIIKRLEEQEL 170 (188)
T ss_pred cccc-cCCHHH------------------H-------HHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHHhhcCcC
Confidence 6433 111100 0 01112233 3799999999999999999888877655444444
Q ss_pred CC
Q 023298 274 IK 275 (284)
Q Consensus 274 ~~ 275 (284)
.|
T Consensus 171 ~~ 172 (188)
T cd04125 171 SP 172 (188)
T ss_pred Cc
Confidence 44
No 149
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.17 E-value=4.2e-10 Score=94.25 Aligned_cols=110 Identities=14% Similarity=0.190 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
.++.+.||||+... ..+.+. ++. .+++++++|... +..| +..++.........+.|.++|.||+
T Consensus 51 ~~l~i~Dt~G~~~~-------~~~~~~~~~~---~~~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~ 117 (166)
T cd04122 51 IKLQIWDTAGQERF-------RAVTRSYYRG---AAGALMVYDITR---RSTYNHLSSWLTDARNLTNPNTVIFLIGNKA 117 (166)
T ss_pred EEEEEEECCCcHHH-------HHHHHHHhcC---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECc
Confidence 46789999997541 112222 322 467899999863 3433 4444443333333468999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+.... ....- . ..+.....+ ..++++||++|+|+++++..+.+.+
T Consensus 118 Dl~~~~-~~~~~------~-------------------~~~~~~~~~-~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 118 DLEAQR-DVTYE------E-------------------AKQFADENG-LLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred cccccc-CcCHH------H-------------------HHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 986433 11000 0 011112233 5799999999999999988776543
No 150
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.17 E-value=8.5e-10 Score=93.20 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH-HHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l-~~~~~~~~p~IlVlNK~ 191 (284)
+..+.++||||+... ..+.. .+.. .+++++++|+....+... ...++..+ ......+.|+++|+||+
T Consensus 57 ~~~l~l~D~~G~~~~-------~~~~~~~~~~---~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~ 125 (173)
T cd04154 57 GYKLNIWDVGGQKTL-------RPYWRNYFES---TDALIWVVDSSDRLRLDD-CKRELKELLQEERLAGATLLILANKQ 125 (173)
T ss_pred CEEEEEEECCCCHHH-------HHHHHHHhCC---CCEEEEEEECCCHHHHHH-HHHHHHHHHhChhhcCCCEEEEEECc
Confidence 346789999997541 11212 2322 468999999864321111 11122111 11122578999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHH-hccCCceEEEEeccCcccHHHHHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV-DEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l-~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
|+.... ...+.. +.+ +.. .......++++||++|+|+++++..+.
T Consensus 126 Dl~~~~-~~~~~~--------~~~----------------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 126 DLPGAL-SEEEIR--------EAL----------------ELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ccccCC-CHHHHH--------HHh----------------CccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 986422 111110 000 000 011235799999999999999998764
No 151
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.17 E-value=1.2e-09 Score=94.33 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=64.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.++||||+.... ......+.. .+++++++|+.....+.. ..+ +......+.|.++|+||+|+
T Consensus 64 ~~~~~l~DtpG~~~~~------~~~~~~~~~---~d~~ilV~d~~~~~~~~~--~~~---~~~~~~~~~p~iiv~NK~Dl 129 (194)
T cd01891 64 DTKINIVDTPGHADFG------GEVERVLSM---VDGVLLLVDASEGPMPQT--RFV---LKKALELGLKPIVVINKIDR 129 (194)
T ss_pred CEEEEEEECCCcHHHH------HHHHHHHHh---cCEEEEEEECCCCccHHH--HHH---HHHHHHcCCCEEEEEECCCC
Confidence 4578999999975411 112222333 367899999865321211 111 11223468999999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC--CceEEEEeccCcccH----------HHHHHHHH
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSI----------RYVLSQID 261 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~--~~~~ipiSa~~~~~l----------~~Ll~~I~ 261 (284)
.... .....+ ++. .+ +..+-.... ...++++||++|.|+ .+|++.|+
T Consensus 130 ~~~~--~~~~~~--------~~~--------~~---~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~ 188 (194)
T cd01891 130 PDAR--PEEVVD--------EVF--------DL---FIELGATEEQLDFPVLYASAKNGWASLNLEDPSEDLEPLFDTII 188 (194)
T ss_pred CCCC--HHHHHH--------HHH--------HH---HHHhCCccccCccCEEEeehhccccccccccchhhHHHHHHHHH
Confidence 6422 111110 000 00 000001111 247999999999554 67777777
Q ss_pred HhcCC
Q 023298 262 NCIQW 266 (284)
Q Consensus 262 ~~l~~ 266 (284)
++.|.
T Consensus 189 ~~~~~ 193 (194)
T cd01891 189 EHVPA 193 (194)
T ss_pred hcCCC
Confidence 77663
No 152
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.17 E-value=5.8e-10 Score=91.56 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=64.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~-~~~p~IlVlNK~D 192 (284)
..+.++||||+.... .+.. .+.. .+++++++|.....+-.. +..+...+..... .+.|+++|+||+|
T Consensus 47 ~~~~l~D~~g~~~~~-------~~~~~~~~~---~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D 115 (160)
T cd00876 47 YTLDILDTAGQEEFS-------AMRDLYIRQ---GDGFILVYSITDRESFEE-IKGYREQILRVKDDEDIPIVLVGNKCD 115 (160)
T ss_pred EEEEEEECCChHHHH-------HHHHHHHhc---CCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCCcEEEEEECCc
Confidence 467899999976521 1222 2333 357888888753221111 2222222222222 4799999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+...+ .... + .+.+....++ ..++++|++++.|+.++++.|.+.
T Consensus 116 ~~~~~-~~~~------~-------------------~~~~~~~~~~-~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 116 LENER-QVSK------E-------------------EGKALAKEWG-CPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred ccccc-eecH------H-------------------HHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHhh
Confidence 86522 1100 0 0011112232 679999999999999999988764
No 153
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.17 E-value=5.7e-10 Score=103.35 Aligned_cols=164 Identities=15% Similarity=0.211 Sum_probs=100.2
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 97 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~ 97 (284)
...++|.|+| ||||||..+++. .+|-...+|++- ++..+|-
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~-------------AkpEvA~YPFTT--------------K~i~vGh----------- 209 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTT-------------AKPEVAPYPFTT--------------KGIHVGH----------- 209 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhc-------------CCCccCCCCccc--------------cceeEee-----------
Confidence 4559999999 999999999998 788887666631 1222331
Q ss_pred hhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHH----HHHHHhcCCCeEEEEEecCCCC--CCHHHHHHHHH
Q 023298 98 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF----VDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCM 171 (284)
Q Consensus 98 ~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l----~~~l~~~d~~~vil~LiDa~~~--~~~~~~i~~~l 171 (284)
++ ++...+=+|||||... ..-...+.+ +-+|.- ...+|+|++|++.. .+....++ ++
T Consensus 210 -----------fe-~~~~R~QvIDTPGlLD--RPl~ErN~IE~qAi~AL~h--l~~~IlF~~D~Se~cgy~lE~Q~~-L~ 272 (346)
T COG1084 210 -----------FE-RGYLRIQVIDTPGLLD--RPLEERNEIERQAILALRH--LAGVILFLFDPSETCGYSLEEQIS-LL 272 (346)
T ss_pred -----------ee-cCCceEEEecCCcccC--CChHHhcHHHHHHHHHHHH--hcCeEEEEEcCccccCCCHHHHHH-HH
Confidence 01 1123577899999875 222222223 222322 24689999999742 34444332 22
Q ss_pred HHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcc
Q 023298 172 ASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES 251 (284)
Q Consensus 172 ~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~ 251 (284)
..+. ...+.|++.|+||+|....+ .+++.- ..+...+....+-+++..+.
T Consensus 273 ~eIk--~~f~~p~v~V~nK~D~~~~e-~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 322 (346)
T COG1084 273 EEIK--ELFKAPIVVVINKIDIADEE-KLEEIE---------------------------ASVLEEGGEEPLKISATKGC 322 (346)
T ss_pred HHHH--HhcCCCeEEEEecccccchh-HHHHHH---------------------------HHHHhhccccccceeeeehh
Confidence 2211 23558999999999987543 333221 11122334556778899999
Q ss_pred cHHHHHHHHHHhcCCC
Q 023298 252 SIRYVLSQIDNCIQWG 267 (284)
Q Consensus 252 ~l~~Ll~~I~~~l~~g 267 (284)
+++.+-..+.+...++
T Consensus 323 ~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 323 GLDKLREEVRKTALEP 338 (346)
T ss_pred hHHHHHHHHHHHhhch
Confidence 9998888887774444
No 154
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.17 E-value=5.3e-10 Score=97.14 Aligned_cols=114 Identities=16% Similarity=0.235 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH----hcCCCEEEE
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV----QLELPHVNI 187 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~----~~~~p~IlV 187 (284)
..+.+.||||+.. + ..+.+. +.. .+++++++|.. ++..| +..++..+.... ..+.|+++|
T Consensus 50 ~~l~l~Dt~G~~~-~------~~~~~~~~~~---a~~~ilv~D~t---~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv 116 (201)
T cd04107 50 VRLQLWDIAGQER-F------GGMTRVYYRG---AVGAIIVFDVT---RPSTFEAVLKWKADLDSKVTLPNGEPIPCLLL 116 (201)
T ss_pred EEEEEEECCCchh-h------hhhHHHHhCC---CCEEEEEEECC---CHHHHHHHHHHHHHHHHhhcccCCCCCcEEEE
Confidence 3678999999743 1 112222 222 36789999975 34443 222332222211 246899999
Q ss_pred ecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 188 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 188 lNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
.||+|+.... .... ..+.++...+++..++++||++|.|++++++.+.+.+-..
T Consensus 117 ~NK~Dl~~~~-~~~~-------------------------~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 117 ANKCDLKKRL-AKDG-------------------------EQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred EECCCccccc-ccCH-------------------------HHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999986322 1100 0012233455667899999999999999999998776543
No 155
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.17 E-value=4.1e-10 Score=93.21 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=62.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH-HHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~-~~~~~~p~IlVlNK~D 192 (284)
..+.+.||||+... ..+.. .+.. .++++|++|+....+... +...+..+.. ....+.|+++|+||+|
T Consensus 44 ~~l~i~D~~G~~~~-------~~~~~~~~~~---~~~iv~v~D~~~~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~D 112 (160)
T cd04156 44 LSLTVWDVGGQEKM-------RTVWKCYLEN---TDGLVYVVDSSDEARLDE-SQKELKHILKNEHIKGVPVVLLANKQD 112 (160)
T ss_pred eEEEEEECCCCHhH-------HHHHHHHhcc---CCEEEEEEECCcHHHHHH-HHHHHHHHHhchhhcCCCEEEEEECcc
Confidence 46899999997541 11212 2322 467899999864321111 2222221111 1114789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
+.... ...+.. ..+.. .++ .......++++||++|+|++++++.|.+
T Consensus 113 l~~~~-~~~~i~--------~~~~~-------------~~~-~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 113 LPGAL-TAEEIT--------RRFKL-------------KKY-CSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccCc-CHHHHH--------HHcCC-------------ccc-CCCCcEEEEecccccCCChHHHHHHHhc
Confidence 85321 111110 00000 000 1111246899999999999999998854
No 156
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.17 E-value=5.3e-10 Score=99.42 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=83.9
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHh-cCCceEEEecCcCCCC---CCCCcc----ccccccc------------------
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCET-VRRTMHIVNLDPAAEN---FDYPVA----MDIRELI------------------ 73 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~-~g~~v~iVdLDPq~~~---~~~~~~----~dir~~i------------------ 73 (284)
.+.|.|.| |||||++..|+..+.. .|++|++||.||..+. +..+.. -+.|+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~ 81 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKE 81 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccccc
Confidence 37899999 9999999996666555 5699999999995542 111110 0122211
Q ss_pred --cHHHHhhhcCc-ccC------------chhhhh-hHhhhhcHHHHHHHHhhccC--CCCEEEEeCCCCcccccccchH
Q 023298 74 --SLEDVMEELGL-GPN------------GGLIYC-MEHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQIELFTHVPVL 135 (284)
Q Consensus 74 --~~~~vm~~~~l-gPn------------g~l~~~-~e~~~~~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~~~~~~ 135 (284)
.+.+++.++.. .|+ |.-=+| |.. |+++-|+... ++++|++||=..+|-|.+..
T Consensus 82 ~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~a-------llR~~l~~l~~~~~e~VivDtEAGiEHfgRg~-- 152 (255)
T COG3640 82 NPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNA-------LLRRLLRHLILNRYEVVIVDTEAGIEHFGRGT-- 152 (255)
T ss_pred CcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHH-------HHHHHHHHHhcccCcEEEEecccchhhhcccc--
Confidence 12222221111 011 111112 222 3333333222 58999999999887443211
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcC-CCEEEEecCCccc
Q 023298 136 RNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLE-LPHVNILSKMDLV 194 (284)
Q Consensus 136 ~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~-~p~IlVlNK~Dll 194 (284)
.+. .++++.++|++.- ....+.+..+ ...++ +++.+|+||+|--
T Consensus 153 ------~~~---vD~vivVvDpS~~sl~taeri~~L------~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 ------IEG---VDLVIVVVDPSYKSLRTAERIKEL------AEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred ------ccC---CCEEEEEeCCcHHHHHHHHHHHHH------HHHhCCceEEEEEeeccch
Confidence 222 4678889998643 2223323222 22567 8999999999853
No 157
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.17 E-value=5.6e-10 Score=112.96 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH-HHHHHHHHHHHHhcCCCE-EEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF-ISGCMASLSAMVQLELPH-VNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~-i~~~l~~l~~~~~~~~p~-IlVlNK~D 192 (284)
..+.|+||||+-. ..+.|...+.. .+++++++|+...-.+... ... .+...+.|. |+|+||+|
T Consensus 51 ~~i~~IDtPGhe~------fi~~m~~g~~~---~D~~lLVVda~eg~~~qT~ehl~------il~~lgi~~iIVVlNKiD 115 (614)
T PRK10512 51 RVLGFIDVPGHEK------FLSNMLAGVGG---IDHALLVVACDDGVMAQTREHLA------ILQLTGNPMLTVALTKAD 115 (614)
T ss_pred cEEEEEECCCHHH------HHHHHHHHhhc---CCEEEEEEECCCCCcHHHHHHHH------HHHHcCCCeEEEEEECCc
Confidence 3578999999632 12233333322 4688999998754333322 211 223456775 79999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC--CceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~--~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+++++ .+.... ..+.+.+...+ ...++|+||.+|+|++.|++.|.+..+..
T Consensus 116 lv~~~-~~~~v~-----------------------~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 116 RVDEA-RIAEVR-----------------------RQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPERE 168 (614)
T ss_pred cCCHH-HHHHHH-----------------------HHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhccc
Confidence 97533 332221 11223334444 36799999999999999999999876654
No 158
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.16 E-value=5.9e-10 Score=95.71 Aligned_cols=118 Identities=14% Similarity=0.124 Sum_probs=65.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHH-HHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHH-HhcCCCEEEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM-VQLELPHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~-~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~-~~~~~p~IlVlN 189 (284)
+.++.++||||+... ..+. ..+.. .+.++|++|++. +..+ ....+..+... ...+.|+++|+|
T Consensus 60 ~~~~~~~D~~G~~~~-------~~~~~~~~~~---ad~ii~vvD~~~---~~~~~~~~~~l~~l~~~~~~~~~piliv~N 126 (184)
T smart00178 60 NIKFTTFDLGGHQQA-------RRLWKDYFPE---VNGIVYLVDAYD---KERFAESKRELDALLSDEELATVPFLILGN 126 (184)
T ss_pred CEEEEEEECCCCHHH-------HHHHHHHhCC---CCEEEEEEECCc---HHHHHHHHHHHHHHHcChhhcCCCEEEEEe
Confidence 347899999997541 1121 22322 468999999863 3332 11122211111 124789999999
Q ss_pred CCccccc--hhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 190 KMDLVTN--KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 190 K~Dll~~--~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
|+|+... ..++.+.+.- .+... . ..-.......++++||++|+|++++++.+.+.
T Consensus 127 K~Dl~~~~~~~~i~~~l~l---------~~~~~--------~--~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 127 KIDAPYAASEDELRYALGL---------TNTTG--------S--KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CccccCCCCHHHHHHHcCC---------Ccccc--------c--ccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 9998431 1122222210 00000 0 00002235679999999999999999988653
No 159
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.15 E-value=7.5e-10 Score=93.09 Aligned_cols=110 Identities=15% Similarity=0.168 Sum_probs=65.9
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
++.+.||||+.+. ..+.+..- ...+++++++|+.. +..+ +..++..+......+.|+++|.||+|+
T Consensus 54 ~~~i~Dt~G~~~~-------~~~~~~~~--~~~d~il~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl 121 (168)
T cd01866 54 KLQIWDTAGQESF-------RSITRSYY--RGAAGALLVYDITR---RETFNHLTSWLEDARQHSNSNMTIMLIGNKCDL 121 (168)
T ss_pred EEEEEECCCcHHH-------HHHHHHHh--ccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 6789999996431 11222221 22467999999863 3333 334443322222246899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
..+. ....- . ...+....+ ..++++||++++|+++++..+.+.+
T Consensus 122 ~~~~-~~~~~------~-------------------~~~~~~~~~-~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 122 ESRR-EVSYE------E-------------------GEAFAKEHG-LIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred cccc-CCCHH------H-------------------HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6432 11000 0 011112232 5799999999999999998887665
No 160
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.15 E-value=7.2e-10 Score=114.70 Aligned_cols=117 Identities=16% Similarity=0.220 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCcccccc---cchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTH---VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~---~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+.++.++||||+...... ....+++.+........+++++++|+....+. .++ ...+.+.++|+++|+||
T Consensus 49 ~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~-l~l------~~ql~e~giPvIvVlNK 121 (772)
T PRK09554 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN-LYL------TLQLLELGIPCIVALNM 121 (772)
T ss_pred ceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh-HHH------HHHHHHcCCCEEEEEEc
Confidence 457899999998764321 12234443332122335789999999764321 211 22345678999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|+.+++ ....-. .++-+.++ ..++|+||.+|+|+++|.+.+.+..+
T Consensus 122 ~Dl~~~~-~i~id~--------------------------~~L~~~LG-~pVvpiSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 122 LDIAEKQ-NIRIDI--------------------------DALSARLG-CPVIPLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred hhhhhcc-CcHHHH--------------------------HHHHHHhC-CCEEEEEeecCCCHHHHHHHHHHhhh
Confidence 9986433 221100 01112233 58999999999999999999998764
No 161
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.15 E-value=2e-09 Score=94.45 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=36.8
Q ss_pred CceEEEEECC-C-CcHHHHHHHHHHHHHh-cCCceEEEecCcCCCC
Q 023298 18 ALVIKCVFSP-P-PNQSTYCSSLYRHCET-VRRTMHIVNLDPAAEN 60 (284)
Q Consensus 18 ~~~~~~viG~-~-sGKTT~~~~La~~l~~-~g~~v~iVdLDPq~~~ 60 (284)
+.+.+.|+|+ | +||||++.+||.+|++ .|+||++||+|||...
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~ 79 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPS 79 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChh
Confidence 3456777765 6 9999999999999997 6999999999999853
No 162
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.14 E-value=1.4e-09 Score=92.29 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=36.4
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
+++++|++ |||||++.+++..+++.|.+|++||+|++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 57899999 9999999999999999999999999999754
No 163
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.14 E-value=5.7e-10 Score=94.37 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=65.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK~ 191 (284)
..+-++||||+-+. ..+.+..- ...+++++++|+. ++..| +..++..+.... ..+.|+++|.||+
T Consensus 63 ~~~~i~Dt~G~~~~-------~~~~~~~~--~~~~~~i~v~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~ 130 (180)
T cd04127 63 IHLQLWDTAGQERF-------RSLTTAFF--RDAMGFLLIFDLT---NEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKA 130 (180)
T ss_pred EEEEEEeCCChHHH-------HHHHHHHh--CCCCEEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCc
Confidence 46789999996431 11222221 1246789999986 34444 333333222211 1367999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+...+ ....- ...++.+.++ ..++++||++|.|++++++.+.+.+
T Consensus 131 Dl~~~~-~v~~~-------------------------~~~~~~~~~~-~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 131 DLEDQR-QVSEE-------------------------QAKALADKYG-IPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred cchhcC-ccCHH-------------------------HHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 986432 11100 0011123333 4789999999999999999987643
No 164
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.14 E-value=7.7e-10 Score=97.37 Aligned_cols=112 Identities=13% Similarity=0.158 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh---cCCCEEEEe
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ---LELPHVNIL 188 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~---~~~p~IlVl 188 (284)
..+.+.||||+... ..+... +.. .+++++++|+... ..| +..++..+..... .+.|+++|.
T Consensus 50 ~~~~i~Dt~G~~~~-------~~l~~~~~~~---ad~iilV~D~t~~---~s~~~~~~w~~~l~~~~~~~~~~~piilVg 116 (215)
T cd04109 50 VTLQVWDIGGQSIG-------GKMLDKYIYG---AHAVFLVYDVTNS---QSFENLEDWYSMVRKVLKSSETQPLVVLVG 116 (215)
T ss_pred EEEEEEECCCcHHH-------HHHHHHHhhc---CCEEEEEEECCCH---HHHHHHHHHHHHHHHhccccCCCceEEEEE
Confidence 36789999997431 123222 222 4689999998643 333 3334333332221 245789999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
||+|+...+ ....- .. .++...++ ..++++||++|+|++++++.+.+.+..
T Consensus 117 NK~DL~~~~-~v~~~------------------~~-------~~~~~~~~-~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 117 NKTDLEHNR-TVKDD------------------KH-------ARFAQANG-MESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred ECccccccc-ccCHH------------------HH-------HHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999986432 11000 00 11223344 468899999999999999999887653
No 165
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.14 E-value=1.3e-10 Score=107.60 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=41.0
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFD 62 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~ 62 (284)
..+.+.|.|.| |||||++.|||..|++.|+||++||+|||.+.+.
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~ 50 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTR 50 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccc
Confidence 34667889999 9999999999999999999999999999998654
No 166
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.13 E-value=7e-10 Score=107.15 Aligned_cols=113 Identities=23% Similarity=0.334 Sum_probs=65.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHH-HHHHHHHHHHHHHHhcCC-CEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLEL-PHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~-~~i~~~l~~l~~~~~~~~-p~IlVlNK~ 191 (284)
+.++.|+||||+.. ....+...+.. .+++++++|+...-.+. .-...+ ....+. +.|+|+||+
T Consensus 79 ~~~~~liDtPGh~~------f~~~~~~~~~~---aD~allVVda~~G~~~qt~~~~~~------~~~~~~~~iivviNK~ 143 (406)
T TIGR02034 79 KRKFIVADTPGHEQ------YTRNMATGAST---ADLAVLLVDARKGVLEQTRRHSYI------ASLLGIRHVVLAVNKM 143 (406)
T ss_pred CeEEEEEeCCCHHH------HHHHHHHHHhh---CCEEEEEEECCCCCccccHHHHHH------HHHcCCCcEEEEEEec
Confidence 55899999999533 23334444433 46899999997542222 112111 113344 578899999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC--ceEEEEeccCcccHHH------------HH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRY------------VL 257 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~--~~~ipiSa~~~~~l~~------------Ll 257 (284)
|+.....+..+ .....+.+++..+++ ..++|+||.+|+|+.+ |+
T Consensus 144 D~~~~~~~~~~----------------------~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~ 201 (406)
T TIGR02034 144 DLVDYDEEVFE----------------------NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLL 201 (406)
T ss_pred ccccchHHHHH----------------------HHHHHHHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHH
Confidence 98742211110 111112233344444 4699999999999875 66
Q ss_pred HHHHHh
Q 023298 258 SQIDNC 263 (284)
Q Consensus 258 ~~I~~~ 263 (284)
+.++..
T Consensus 202 ~~L~~~ 207 (406)
T TIGR02034 202 EILETV 207 (406)
T ss_pred HHHHhc
Confidence 777654
No 167
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.13 E-value=4.5e-10 Score=94.14 Aligned_cols=110 Identities=10% Similarity=0.180 Sum_probs=62.4
Q ss_pred CEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH----hcCCCEEEEecC
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV----QLELPHVNILSK 190 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~----~~~~p~IlVlNK 190 (284)
.+.|.||||+... ..+.. .++. .+++++++|.....+... +..+...+.... ..+.|.++|.||
T Consensus 55 ~l~i~D~~G~~~~-------~~~~~~~~~~---~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK 123 (170)
T cd04116 55 TLQIWDTAGQERF-------RSLRTPFYRG---SDCCLLTFAVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVVLGNK 123 (170)
T ss_pred EEEEEeCCChHHH-------HHhHHHHhcC---CCEEEEEEECCCHHHHHh-HHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 5678899997531 11222 2322 345666666643211111 222322222221 245799999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+|+..+. ... ..+.++.++++...++++||++|+|+.++++.+.+.
T Consensus 124 ~Dl~~~~--~~~-------------------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 124 NDIPERQ--VST-------------------------EEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred ccccccc--cCH-------------------------HHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 9985322 100 001122345555689999999999999999988754
No 168
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.13 E-value=1.4e-09 Score=101.78 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=37.9
Q ss_pred ceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 19 LVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 19 ~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
.+++.|+|. | |||||++.|||..|++.|++|++||+|||.+..
T Consensus 93 ~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~ 137 (322)
T TIGR03815 93 GVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGL 137 (322)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCe
Confidence 455777765 6 999999999999999999999999999998854
No 169
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.13 E-value=1.3e-09 Score=89.63 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=65.1
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.+.++||||+.... .+... +.. .+++++++|.....+.. .+..++..+......++|.++|+||+|+.
T Consensus 50 ~~~~~D~~g~~~~~-------~~~~~~~~~---~~~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~piiiv~nK~D~~ 118 (162)
T cd04123 50 DLAIWDTAGQERYH-------ALGPIYYRD---ADGAILVYDITDADSFQ-KVKKWIKELKQMRGNNISLVIVGNKIDLE 118 (162)
T ss_pred EEEEEECCchHHHH-------HhhHHHhcc---CCEEEEEEECCCHHHHH-HHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 57899999975421 12222 222 46789999975332111 12333333333333368999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.+. .+..- .+.+....++ ..++++|++++.|++++++.+.+.+
T Consensus 119 ~~~-~~~~~-------------------------~~~~~~~~~~-~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 119 RQR-VVSKS-------------------------EAEEYAKSVG-AKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred ccc-CCCHH-------------------------HHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 432 11100 0011112222 5688999999999999999987643
No 170
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.13 E-value=8.6e-10 Score=93.35 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH-HHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~-~~~~~~p~IlVlNK~ 191 (284)
+..+.+.||||+... ..+.. .+.. .++++|++|+....+.... ...+..+.. -...+.|+++|.||+
T Consensus 52 ~~~~~l~Dt~G~~~~-------~~~~~~~~~~---a~~ii~v~D~t~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~ 120 (168)
T cd04149 52 NVKFNVWDVGGQDKI-------RPLWRHYYTG---TQGLIFVVDSADRDRIDEA-RQELHRIINDREMRDALLLVFANKQ 120 (168)
T ss_pred CEEEEEEECCCCHHH-------HHHHHHHhcc---CCEEEEEEeCCchhhHHHH-HHHHHHHhcCHhhcCCcEEEEEECc
Confidence 346899999997541 11212 2322 4689999998643222221 122111111 011358999999999
Q ss_pred ccccch--hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 192 DLVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 192 Dll~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
|+.... .++.+++. +. + .......++++||++|+|++++++.|.+
T Consensus 121 Dl~~~~~~~~i~~~~~---------~~---------------~--~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 121 DLPDAMKPHEIQEKLG---------LT---------------R--IRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CCccCCCHHHHHHHcC---------CC---------------c--cCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 985321 02222211 00 0 0011246899999999999999988753
No 171
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.13 E-value=1.1e-09 Score=96.84 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=36.5
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
+++.|.| +||||++.+++.++++.|+||++||+||+.+
T Consensus 2 ~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~ 40 (217)
T cd02035 2 IFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN 40 (217)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc
Confidence 6889999 9999999999999999999999999999995
No 172
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.13 E-value=5.9e-10 Score=94.16 Aligned_cols=120 Identities=12% Similarity=0.105 Sum_probs=66.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--H-HHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--I-SGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i-~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+.++||||+.+....+. . .....+++++++|... +..| + ..++..+.. ...+.|+++|.||+
T Consensus 48 ~~~~i~Dt~G~~~~~~~~~--------~-~~~~a~~~i~v~d~~~---~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~ 114 (173)
T cd04130 48 VRLQLCDTAGQDEFDKLRP--------L-CYPDTDVFLLCFSVVN---PSSFQNISEKWIPEIRK-HNPKAPIILVGTQA 114 (173)
T ss_pred EEEEEEECCCChhhccccc--------c-ccCCCcEEEEEEECCC---HHHHHHHHHHHHHHHHh-hCCCCCEEEEeeCh
Confidence 3678999999855322111 1 1122468899999863 3333 2 123322221 12368999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
|+......+..+....... +. .....++.+.++...++++||++|.|++++++.+.
T Consensus 115 Dl~~~~~~~~~~~~~~~~~----v~----------~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 115 DLRTDVNVLIQLARYGEKP----VS----------QSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hhccChhHHHHHhhcCCCC----cC----------HHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9865431111111100000 00 00111222445666899999999999999998764
No 173
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.13 E-value=6.7e-10 Score=97.21 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=79.5
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 97 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~ 97 (284)
|+.++++||. |||||++.-||.++..+|++|.+|.+|...-.- +..+-++.++| ++ |--..-..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga-------~eQL~~~a~~l---~v-p~~~~~~~---- 65 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGA-------VEQLKTYAEIL---GV-PFYVARTE---- 65 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHH-------HHHHHHHHHHH---TE-EEEESSTT----
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccH-------HHHHHHHHHHh---cc-ccchhhcc----
Confidence 7889999999 999999999999999889999999999876420 11111122221 11 10000000
Q ss_pred hhcHHHHHHHHhhcc--CCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHH
Q 023298 98 EDNLDDWLAEELDNY--LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 175 (284)
Q Consensus 98 ~~~~~~~l~~~l~~~--~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~ 175 (284)
..-.+.+.+.+++. .++++|+|||||.... .......|.+.+.... .+-+.+++++....+.-..+.
T Consensus 66 -~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~--d~~~~~el~~~~~~~~-~~~~~LVlsa~~~~~~~~~~~------- 134 (196)
T PF00448_consen 66 -SDPAEIAREALEKFRKKGYDLVLIDTAGRSPR--DEELLEELKKLLEALN-PDEVHLVLSATMGQEDLEQAL------- 134 (196)
T ss_dssp -SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSST--HHHHHHHHHHHHHHHS-SSEEEEEEEGGGGGHHHHHHH-------
T ss_pred -hhhHHHHHHHHHHHhhcCCCEEEEecCCcchh--hHHHHHHHHHHhhhcC-CccceEEEecccChHHHHHHH-------
Confidence 00001122222211 1579999999997652 1222333433333222 345777888754322111111
Q ss_pred HHHhcCCCEEEEecCCccccc
Q 023298 176 AMVQLELPHVNILSKMDLVTN 196 (284)
Q Consensus 176 ~~~~~~~p~IlVlNK~Dll~~ 196 (284)
...+.-.+.=++++|.|-..+
T Consensus 135 ~~~~~~~~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 135 AFYEAFGIDGLILTKLDETAR 155 (196)
T ss_dssp HHHHHSSTCEEEEESTTSSST
T ss_pred HHhhcccCceEEEEeecCCCC
Confidence 111222345677999997653
No 174
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.13 E-value=4.8e-10 Score=108.06 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=103.0
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 96 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~ 96 (284)
|.+ ++++|+| ||||+|-..|+. +..++|--=|+.+ ||.+ ++
T Consensus 217 G~k-vvIiG~PNvGKSSLLNaL~~------~d~AIVTdI~GTT----------RDvi------ee--------------- 258 (454)
T COG0486 217 GLK-VVIIGRPNVGKSSLLNALLG------RDRAIVTDIAGTT----------RDVI------EE--------------- 258 (454)
T ss_pred Cce-EEEECCCCCcHHHHHHHHhc------CCceEecCCCCCc----------cceE------EE---------------
Confidence 444 8999999 999999998887 5555554333332 1211 10
Q ss_pred hhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHH--HHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHH
Q 023298 97 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF--VDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMAS 173 (284)
Q Consensus 97 ~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l--~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~ 173 (284)
.+ .+. +..+-++||.|.-|. ....+++ -++.+++..+++++|++|++.. ...+..+..
T Consensus 259 ---~i------~i~---G~pv~l~DTAGiRet---~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~---- 319 (454)
T COG0486 259 ---DI------NLN---GIPVRLVDTAGIRET---DDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE---- 319 (454)
T ss_pred ---EE------EEC---CEEEEEEecCCcccC---ccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH----
Confidence 00 122 557899999998762 2334443 4444444446899999999864 222222211
Q ss_pred HHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccH
Q 023298 174 LSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSI 253 (284)
Q Consensus 174 l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l 253 (284)
....++|+++|+||+|+..+. ..... +...-..++++|+++|+|+
T Consensus 320 ---~~~~~~~~i~v~NK~DL~~~~-~~~~~-------------------------------~~~~~~~~i~iSa~t~~Gl 364 (454)
T COG0486 320 ---LLPKKKPIIVVLNKADLVSKI-ELESE-------------------------------KLANGDAIISISAKTGEGL 364 (454)
T ss_pred ---hcccCCCEEEEEechhccccc-ccchh-------------------------------hccCCCceEEEEecCccCH
Confidence 235679999999999998654 21111 0111236899999999999
Q ss_pred HHHHHHHHHhcCCC
Q 023298 254 RYVLSQIDNCIQWG 267 (284)
Q Consensus 254 ~~Ll~~I~~~l~~g 267 (284)
+.|.++|.+.++.+
T Consensus 365 ~~L~~~i~~~~~~~ 378 (454)
T COG0486 365 DALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999999887
No 175
>PRK10867 signal recognition particle protein; Provisional
Probab=99.12 E-value=7.3e-10 Score=107.65 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=39.8
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEecCcCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVNLDPAAE 59 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVdLDPq~~ 59 (284)
.+|.+++++|++ |||||+|.+||.+|... |++|++|++|++..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 358899999999 99999999999999998 99999999999765
No 176
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.12 E-value=1.5e-09 Score=88.46 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=62.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHH-HHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS-LSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~-l~~~~~~~~p~IlVlNK~D 192 (284)
..+.++||||+... ..+.. .+.. .+++++++|+....+... ....+.. +......++|+++|+||+|
T Consensus 44 ~~~~~~D~~g~~~~-------~~~~~~~~~~---~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~D 112 (159)
T cd04159 44 VTLKVWDLGGQPRF-------RSMWERYCRG---VNAIVYVVDAADRTALEA-AKNELHDLLEKPSLEGIPLLVLGNKND 112 (159)
T ss_pred EEEEEEECCCCHhH-------HHHHHHHHhc---CCEEEEEEECCCHHHHHH-HHHHHHHHHcChhhcCCCEEEEEeCcc
Confidence 36789999997431 11222 2322 467899999864321111 1111111 1111124789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
+.... ......+ .+.. .. .......++++|+++|.|++.+++.|.+
T Consensus 113 ~~~~~-~~~~~~~--------~~~~--------------~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 113 LPGAL-SVDELIE--------QMNL--------------KS-ITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCc-CHHHHHH--------HhCc--------------cc-ccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 86533 2211110 0000 00 0012257899999999999999998864
No 177
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.12 E-value=8.3e-10 Score=93.52 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=64.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH-HHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~-~~~~~~p~IlVlNK~D 192 (284)
..+.++||||+.+.. .+... +.. .+.+++++|.....+. ..+..+...+.. ....+.|+++|.||+|
T Consensus 49 ~~~~l~D~~g~~~~~-------~~~~~~~~~---~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 117 (180)
T cd04137 49 YHLEIVDTAGQDEYS-------ILPQKYSIG---IHGYILVYSVTSRKSF-EVVKVIYDKILDMLGKESVPIVLVGNKSD 117 (180)
T ss_pred EEEEEEECCChHhhH-------HHHHHHHhh---CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEEchh
Confidence 467899999975411 11111 222 2457777887643211 112222222222 1234689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+...+ ..... . +..+...++ ..++++||+++.|+.+++..+.+.+..
T Consensus 118 l~~~~-~~~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (180)
T cd04137 118 LHTQR-QVSTE------E-------------------GKELAESWG-AAFLESSARENENVEEAFELLIEEIEK 164 (180)
T ss_pred hhhcC-ccCHH------H-------------------HHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 85422 11100 0 001112233 578999999999999999998876543
No 178
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.12 E-value=8.7e-10 Score=93.56 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=61.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHH--HHHHHHHHHHH-hcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--SGCMASLSAMV-QLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i--~~~l~~l~~~~-~~~~p~IlVlNK 190 (284)
+.++.++||||+.+.. ......++. .++++|++|++.. ..+- ...+..+.... ..+.|+++|+||
T Consensus 58 ~~~~~l~D~~G~~~~~------~~~~~~~~~---~d~vi~V~D~s~~---~~~~~~~~~l~~~~~~~~~~~~p~viv~NK 125 (174)
T cd04153 58 NIRFLMWDIGGQESLR------SSWNTYYTN---TDAVILVIDSTDR---ERLPLTKEELYKMLAHEDLRKAVLLVLANK 125 (174)
T ss_pred CeEEEEEECCCCHHHH------HHHHHHhhc---CCEEEEEEECCCH---HHHHHHHHHHHHHHhchhhcCCCEEEEEEC
Confidence 3478999999975411 111122333 4689999998643 2221 11111111111 135899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
+|+.... ...++. ..+.. ...... ...++++||++|+|+++++..|.
T Consensus 126 ~Dl~~~~-~~~~i~--------~~l~~--------------~~~~~~-~~~~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 126 QDLKGAM-TPAEIS--------ESLGL--------------TSIRDH-TWHIQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred CCCCCCC-CHHHHH--------HHhCc--------------ccccCC-ceEEEecccCCCCCHHHHHHHHh
Confidence 9985321 111110 00100 000111 14689999999999999998875
No 179
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.12 E-value=6.5e-10 Score=93.71 Aligned_cols=114 Identities=14% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+.+.||||+.. +. . +.+. +.. .+++++++|... +..+ +..++..+..... +.|+++|.||+
T Consensus 49 ~~l~i~Dt~G~~~-~~--~----~~~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~ 114 (166)
T cd00877 49 IRFNVWDTAGQEK-FG--G----LRDGYYIG---GQCAIIMFDVTS---RVTYKNVPNWHRDLVRVCG-NIPIVLCGNKV 114 (166)
T ss_pred EEEEEEECCCChh-hc--c----ccHHHhcC---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhCC-CCcEEEEEEch
Confidence 4678999999754 11 1 1111 222 467899999863 3333 3444444333332 79999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDAD 271 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~ 271 (284)
|+..+. ..... .+. .......++++||++|+|++++++.+.+.+-..++.+
T Consensus 115 Dl~~~~--~~~~~--------------------------~~~-~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~~ 165 (166)
T cd00877 115 DIKDRK--VKAKQ--------------------------ITF-HRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNLE 165 (166)
T ss_pred hccccc--CCHHH--------------------------HHH-HHHcCCEEEEEeCCCCCChHHHHHHHHHHHHhccccc
Confidence 986321 11000 001 1123467999999999999999999998887666543
No 180
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.12 E-value=2.3e-09 Score=89.99 Aligned_cols=114 Identities=9% Similarity=0.162 Sum_probs=66.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHH---HHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS---GCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~---~~l~~l~~~~~~~~p~IlVlNK 190 (284)
..++.++||||+.+.. ..+...+.. .+++++++|+.. +..+-. .++..+... ..+.|+++|.||
T Consensus 46 ~~~~~i~Dt~G~~~~~------~~~~~~~~~---ad~~ilv~d~~~---~~s~~~~~~~~~~~i~~~-~~~~pviiv~nK 112 (166)
T cd01893 46 RVPTTIVDTSSRPQDR------ANLAAEIRK---ANVICLVYSVDR---PSTLERIRTKWLPLIRRL-GVKVPIILVGNK 112 (166)
T ss_pred eEEEEEEeCCCchhhh------HHHhhhccc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHHh-CCCCCEEEEEEc
Confidence 3478999999975421 112222322 457888898753 333321 232222222 237899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+.+.. .... ++ +. +..+.+.+. ...++++||++|.|++++++.+.+..
T Consensus 113 ~Dl~~~~-~~~~-~~-------~~---------------~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 113 SDLRDGS-SQAG-LE-------EE---------------MLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hhccccc-chhH-HH-------HH---------------HHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 9996533 1110 00 00 011112222 24799999999999999999998764
No 181
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.12 E-value=7e-10 Score=93.30 Aligned_cols=124 Identities=10% Similarity=0.146 Sum_probs=65.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+.+... +.. .+.. .+++++++|.....+-......++..+.. ...++|+++|.||+|+
T Consensus 49 ~~l~i~Dt~G~~~~~~-------~~~~~~~~---~d~~i~v~~~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl 117 (175)
T cd01870 49 VELALWDTAGQEDYDR-------LRPLSYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDL 117 (175)
T ss_pred EEEEEEeCCCchhhhh-------ccccccCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEeeChhc
Confidence 3678999999754211 111 1222 35677777765322111211122222111 1237899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
.... .....+. .... . ... .....++...++...++++||++|.|+++++..|.+.
T Consensus 118 ~~~~-~~~~~i~--------~~~~-~-~v~---~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 118 RNDE-HTRRELA--------KMKQ-E-PVK---PEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred ccCh-hhhhhhh--------hccC-C-Ccc---HHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 6533 2211110 0000 0 000 0001122234556689999999999999999998764
No 182
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.12 E-value=9.7e-10 Score=107.53 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=69.0
Q ss_pred CCCEEEEeCCCCcccccccchHHH--HHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRN--FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~--l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+..+.++||||+.+ .+ ...+. +.+.+......+++++++|++...+.... ..+. . ..++|+++|+||+
T Consensus 262 g~~i~l~DT~G~~~--~~-~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~--~~l~---~--~~~~piiiV~NK~ 331 (449)
T PRK05291 262 GIPLRLIDTAGIRE--TD-DEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDD--EILE---E--LKDKPVIVVLNKA 331 (449)
T ss_pred CeEEEEEeCCCCCC--Cc-cHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHH--HHHH---h--cCCCCcEEEEEhh
Confidence 44689999999864 21 22222 22222222335789999999754333321 1111 1 3578999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
|+..+. ... ......++++||++|.|++.|++.|.+.+..
T Consensus 332 DL~~~~-~~~----------------------------------~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 332 DLTGEI-DLE----------------------------------EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred hccccc-hhh----------------------------------hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 986533 111 0112468999999999999999999998864
No 183
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.12 E-value=9.8e-10 Score=94.62 Aligned_cols=112 Identities=12% Similarity=0.174 Sum_probs=66.3
Q ss_pred CEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh---cCCCEEEEecCC
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ---LELPHVNILSKM 191 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~---~~~p~IlVlNK~ 191 (284)
.+-++||||+.... . +.+ .+.. .+++++++|.....+... +..++..+..... .+.|+++|.||+
T Consensus 48 ~l~i~Dt~G~~~~~---~----~~~~~~~~---ad~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~piilvgNK~ 116 (190)
T cd04144 48 MLEVLDTAGQEEYT---A----LRDQWIRE---GEGFILVYSITSRSTFER-VERFREQIQRVKDESAADVPIMIVGNKC 116 (190)
T ss_pred EEEEEECCCchhhH---H----HHHHHHHh---CCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcccCCCCCEEEEEECh
Confidence 56789999975421 1 212 2333 357888888753322111 3344443333222 368999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+...+ .+.... ..+....++ ..++++||++|.|++++++.+.+.+.
T Consensus 117 Dl~~~~-~v~~~~-------------------------~~~~~~~~~-~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 117 DKVYER-EVSTEE-------------------------GAALARRLG-CEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred hccccC-ccCHHH-------------------------HHHHHHHhC-CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 986432 211000 011123344 47999999999999999998887643
No 184
>PLN03118 Rab family protein; Provisional
Probab=99.12 E-value=1.7e-09 Score=94.81 Aligned_cols=116 Identities=11% Similarity=0.138 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHH-HHHHHHHHH-hcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISG-CMASLSAMV-QLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~-~l~~l~~~~-~~~~p~IlVlNK~ 191 (284)
.++.++||||+... ..+... +.. .+++++++|+....+... +.. +...+.... ..+.|.++|.||+
T Consensus 62 ~~l~l~Dt~G~~~~-------~~~~~~~~~~---~d~~vlv~D~~~~~sf~~-~~~~~~~~~~~~~~~~~~~~ilv~NK~ 130 (211)
T PLN03118 62 LKLTIWDTAGQERF-------RTLTSSYYRN---AQGIILVYDVTRRETFTN-LSDVWGKEVELYSTNQDCVKMLVGNKV 130 (211)
T ss_pred EEEEEEECCCchhh-------HHHHHHHHhc---CCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 46799999997542 112222 322 367899999864322111 211 212122111 2457999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
|+...+ .+..-. . .+....++ ..++++||+++.|++++++.|.+.+...+
T Consensus 131 Dl~~~~-~i~~~~------~-------------------~~~~~~~~-~~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 131 DRESER-DVSREE------G-------------------MALAKEHG-CLFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred cccccC-ccCHHH------H-------------------HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 986433 211000 0 01112233 46899999999999999999998876544
No 185
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.11 E-value=1.6e-09 Score=104.12 Aligned_cols=115 Identities=19% Similarity=0.312 Sum_probs=68.1
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEE-EEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHV-NILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~I-lVlNK~D 192 (284)
+.++.++||||+.. ....+...+. ..+++++++|+...-.+... . .+......+.|++ +|+||+|
T Consensus 74 ~~~~~liDtpGh~~------f~~~~~~~~~---~~D~~ilVvda~~g~~~qt~--e---~l~~~~~~gi~~iIvvvNK~D 139 (394)
T TIGR00485 74 NRHYAHVDCPGHAD------YVKNMITGAA---QMDGAILVVSATDGPMPQTR--E---HILLARQVGVPYIVVFLNKCD 139 (394)
T ss_pred CEEEEEEECCchHH------HHHHHHHHHh---hCCEEEEEEECCCCCcHHHH--H---HHHHHHHcCCCEEEEEEEecc
Confidence 45789999999643 1223333332 24678899999753223322 1 1112335688876 6899999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcc--------cHHHHHHHH
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKES--------SIRYVLSQI 260 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~--------~l~~Ll~~I 260 (284)
++.++ +..+.. ...+.+++..+++ ..++|+||.+|. ++..|++.+
T Consensus 140 l~~~~-~~~~~~----------------------~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l 196 (394)
T TIGR00485 140 MVDDE-ELLELV----------------------EMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAV 196 (394)
T ss_pred cCCHH-HHHHHH----------------------HHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHH
Confidence 97543 221111 0122333444443 679999999875 466788888
Q ss_pred HHhcC
Q 023298 261 DNCIQ 265 (284)
Q Consensus 261 ~~~l~ 265 (284)
++..|
T Consensus 197 ~~~~~ 201 (394)
T TIGR00485 197 DEYIP 201 (394)
T ss_pred HhcCC
Confidence 77654
No 186
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.11 E-value=7.3e-10 Score=114.29 Aligned_cols=158 Identities=14% Similarity=0.094 Sum_probs=89.9
Q ss_pred CceEEEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC----CCCccccccc----cccHHHHhh-----hc
Q 023298 18 ALVIKCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIRE----LISLEDVME-----EL 82 (284)
Q Consensus 18 ~~~~~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~----~~~~~~dir~----~i~~~~vm~-----~~ 82 (284)
++++++|.|+. +||||++.|||.+++..|+||++||+|++.... ..+....+.+ -..+++++. +.
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 609 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 609 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCCCCHHHHhCCCCCHHHheeccCCCCE
Confidence 55778899885 999999999999999999999999999997532 1111111111 122333332 34
Q ss_pred CcccCchhhh-hhHhhh-hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC
Q 023298 83 GLGPNGGLIY-CMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 160 (284)
Q Consensus 83 ~lgPng~l~~-~~e~~~-~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~ 160 (284)
.+.|.|.... ..+++. ..+.+.+ +.+.. +++||||||||...... -.+ +. ...+.+++++.....
T Consensus 610 ~vl~~g~~~~~p~ell~~~~~~~ll-~~l~~--~yD~IIIDtPP~~~~~D-----a~~---la--~~ad~~llVvr~~~t 676 (726)
T PRK09841 610 DVITRGQVPPNPSELLMRDRMRQLL-EWAND--HYDLVIVDTPPMLAVSD-----AAV---VG--RSVGTSLLVARFGLN 676 (726)
T ss_pred EEEeCCCCCCCHHHHhCcHHHHHHH-HHHHh--cCCEEEEeCCCccccch-----HHH---HH--HhCCeEEEEEeCCCC
Confidence 4556554322 223332 2332222 23332 78999999999765211 011 11 112456666644322
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEE-EEecCCcc
Q 023298 161 TDVTKFISGCMASLSAMVQLELPHV-NILSKMDL 193 (284)
Q Consensus 161 ~~~~~~i~~~l~~l~~~~~~~~p~I-lVlNK~Dl 193 (284)
...-+. .++..+.+.+.+.+ +|+|+++.
T Consensus 677 --~~~~~~---~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 677 --TAKEVS---LSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred --CHHHHH---HHHHHHHhCCCceEEEEEeCccc
Confidence 212222 23344455666654 88999974
No 187
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.11 E-value=1.5e-09 Score=90.84 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=61.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK~ 191 (284)
+.++.+.||||+... ..+... ++. .++++|++|+....+... +...+..+... ...+.|.++|.||+
T Consensus 43 ~~~~~l~D~~G~~~~-------~~~~~~~~~~---ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~NK~ 111 (159)
T cd04150 43 NISFTVWDVGGQDKI-------RPLWRHYFQN---TQGLIFVVDSNDRERIGE-AREELQRMLNEDELRDAVLLVFANKQ 111 (159)
T ss_pred CEEEEEEECCCCHhH-------HHHHHHHhcC---CCEEEEEEeCCCHHHHHH-HHHHHHHHHhcHHhcCCCEEEEEECC
Confidence 446899999997541 112222 333 468999999864322221 11222211111 11358999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
|+.... ...+.. ..+.. ..+. .....++++||++|+|++++++.|.+
T Consensus 112 Dl~~~~-~~~~i~--------~~~~~--------------~~~~-~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 112 DLPNAM-SAAEVT--------DKLGL--------------HSLR-NRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCC-CHHHHH--------HHhCc--------------cccC-CCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 985321 111111 00000 0000 11235789999999999999988753
No 188
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.11 E-value=6.7e-10 Score=93.31 Aligned_cols=123 Identities=11% Similarity=0.103 Sum_probs=66.4
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
.+-++||||+......+ . . .....+++++++|.....+-......++..+... ..+.|+++|.||+|+..
T Consensus 49 ~~~i~Dt~G~~~~~~~~-------~-~-~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 49 LLGLYDTAGQEDYDRLR-------P-L-SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRD 118 (174)
T ss_pred EEEEEeCCCcccccccc-------c-c-cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhc
Confidence 46789999975522111 1 1 1112357788888753322111111222222222 45799999999999865
Q ss_pred chhhhhhhcCcchHHHHHHhhh-cchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 196 NKKEIEDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~-~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
.......... ... ... .....+....++...++.+||++|.|++++++.+.+.
T Consensus 119 ~~~~~~~~~~---------~~~~~v~------~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 119 DPKTLARLND---------MKEKPVT------VEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred ChhhHHHHhh---------ccCCCCC------HHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 3311111100 000 000 0011223345666689999999999999999988764
No 189
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.11 E-value=1.4e-09 Score=107.09 Aligned_cols=105 Identities=22% Similarity=0.260 Sum_probs=60.1
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcC-CCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLE-LPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~-~p~IlVlNK~ 191 (284)
+.+++|+||||+ + .....+...+. ..+++++++|+...-.+ ......++ ...+ .|.|+|+||+
T Consensus 106 ~~~i~~iDTPGh-~-----~f~~~~~~~l~---~aD~allVVDa~~G~~~qt~~~~~l~------~~lg~~~iIvvvNKi 170 (474)
T PRK05124 106 KRKFIIADTPGH-E-----QYTRNMATGAS---TCDLAILLIDARKGVLDQTRRHSFIA------TLLGIKHLVVAVNKM 170 (474)
T ss_pred CcEEEEEECCCc-H-----HHHHHHHHHHh---hCCEEEEEEECCCCccccchHHHHHH------HHhCCCceEEEEEee
Confidence 568999999993 2 22333444443 35789999999753221 11111111 1223 4788999999
Q ss_pred ccccchhh-hhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC---CceEEEEeccCcccHHHH
Q 023298 192 DLVTNKKE-IEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS---MVSFMPLDLRKESSIRYV 256 (284)
Q Consensus 192 Dll~~~~~-l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~---~~~~ipiSa~~~~~l~~L 256 (284)
|+.....+ +.+.. ..+..++..++ ...++|+||++|+|+..+
T Consensus 171 D~~~~~~~~~~~i~-----------------------~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 171 DLVDYSEEVFERIR-----------------------EDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ccccchhHHHHHHH-----------------------HHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 99742201 11111 11222233333 478999999999998763
No 190
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.11 E-value=1.1e-09 Score=96.10 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
.++.+.||+|+-.. ..+.+. +.. ++++++++|... +..| +..++..+......+.|+++|.||+
T Consensus 49 v~l~iwDtaGqe~~-------~~l~~~y~~~---ad~iIlVfDvtd---~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~ 115 (202)
T cd04120 49 IRLQIWDTAGQERF-------NSITSAYYRS---AKGIILVYDITK---KETFDDLPKWMKMIDKYASEDAELLLVGNKL 115 (202)
T ss_pred EEEEEEeCCCchhh-------HHHHHHHhcC---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 46789999997541 112222 322 467899999864 3333 3444443333323468999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
|+...+ ++.... . .++.+......++.+||++|.|+++++..+.+.+..
T Consensus 116 DL~~~~-~v~~~~----------------------~---~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 116 DCETDR-EISRQQ----------------------G---EKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred cccccc-ccCHHH----------------------H---HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 985432 221110 0 011122222578999999999999999888776543
No 191
>PRK11519 tyrosine kinase; Provisional
Probab=99.11 E-value=7.2e-10 Score=114.24 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=92.8
Q ss_pred CceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC----CCCcccccc----ccccHHHHh-----hhc
Q 023298 18 ALVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIR----ELISLEDVM-----EEL 82 (284)
Q Consensus 18 ~~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~----~~~~~~dir----~~i~~~~vm-----~~~ 82 (284)
+...++|.|+ | +||||+|.|||..++..|+||++||+|++...+ ..+...-+. +..++++++ .++
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~~gl~~~l~~~~~l~~~i~~~~~~~l 604 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSDILIGQGDITTAAKPTSIANF 604 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCCCCHHHHhCCCCCHHHhecccCcCCE
Confidence 4567888885 5 999999999999999999999999999997632 111111111 122344443 345
Q ss_pred CcccCchhhh-hhHhhh-hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC
Q 023298 83 GLGPNGGLIY-CMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 160 (284)
Q Consensus 83 ~lgPng~l~~-~~e~~~-~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~ 160 (284)
.+.|.|.... ..+++. ..+.+.+ +.+++ +++||||||||..... .-.+ +. ...+.+++++-....
T Consensus 605 ~~lp~g~~~~~~~ell~s~~~~~ll-~~l~~--~yD~ViiDtpP~~~v~-----Da~~---l~--~~~d~~l~Vvr~~~t 671 (719)
T PRK11519 605 DLIPRGQVPPNPSELLMSERFAELV-NWASK--NYDLVLIDTPPILAVT-----DAAI---VG--RHVGTTLMVARYAVN 671 (719)
T ss_pred EEEeCCCCCCCHHHHhhHHHHHHHH-HHHHh--cCCEEEEeCCCcccch-----HHHH---HH--HHCCeEEEEEeCCCC
Confidence 5566655422 223332 2332222 23332 7899999999976421 0111 11 123567787765322
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEE-EEecCCcc
Q 023298 161 TDVTKFISGCMASLSAMVQLELPHV-NILSKMDL 193 (284)
Q Consensus 161 ~~~~~~i~~~l~~l~~~~~~~~p~I-lVlNK~Dl 193 (284)
+...+. .++..+.+.+.+.+ +|+|+++.
T Consensus 672 --~~~~~~---~~~~~l~~~~~~~~G~VlN~v~~ 700 (719)
T PRK11519 672 --TLKEVE---TSLSRFEQNGIPVKGVILNSIFR 700 (719)
T ss_pred --CHHHHH---HHHHHHHhCCCCeEEEEEeCCcc
Confidence 223232 33445556777776 78999864
No 192
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.10 E-value=2.1e-09 Score=91.66 Aligned_cols=120 Identities=10% Similarity=0.057 Sum_probs=69.8
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
.+.+.||||+.+.. .+.... ....+++++++|.....+-......++..+.. ...+.|.|+|.||+|+..
T Consensus 50 ~l~i~Dt~G~~~~~-------~~~~~~--~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 50 ELALWDTAGQEEYD-------RLRPLS--YPDVDVLLICYAVDNPTSLDNVEDKWFPEVNH-FCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred EEEEEECCCchhHH-------HHHHHh--CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEeChhhhh
Confidence 57899999975411 121111 12246899999986433222222223322221 124689999999999864
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
.. ........ ....++...++...++++||++|.|+++++..+.+.+...
T Consensus 120 ~~-~~~~~v~~---------------------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 120 DK-NLDRKVTP---------------------AQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKK 169 (187)
T ss_pred Cc-cccCCcCH---------------------HHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhh
Confidence 32 11111110 0011223445555899999999999999999888776543
No 193
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.10 E-value=1.7e-09 Score=93.85 Aligned_cols=116 Identities=9% Similarity=0.132 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlNK 190 (284)
..+.++||||+.+.. . +.+ .+.. .+++++++|+.. +..+ +..++..+..... .++|+++|+||
T Consensus 47 ~~l~i~D~~G~~~~~---~----~~~~~~~~---ad~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK 113 (198)
T cd04147 47 LTLDILDTSGSYSFP---A----MRKLSIQN---SDAFALVYAVDD---PESFEEVERLREEILEVKEDKFVPIVVVGNK 113 (198)
T ss_pred EEEEEEECCCchhhh---H----HHHHHhhc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEc
Confidence 367899999975421 1 111 1222 468899999863 3333 3333332222222 47999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHh-ccCCceEEEEeccCcccHHHHHHHHHHhcCCCCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD-EYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGED 269 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~-~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d 269 (284)
+|+...+..+..-. . .+... .+ ...++++||++|.|++++++.+.+.++....
T Consensus 114 ~Dl~~~~~~v~~~~----------~---------------~~~~~~~~-~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 167 (198)
T cd04147 114 ADSLEEERQVPAKD----------A---------------LSTVELDW-NCGFVETSAKDNENVLEVFKELLRQANLPYN 167 (198)
T ss_pred cccccccccccHHH----------H---------------HHHHHhhc-CCcEEEecCCCCCCHHHHHHHHHHHhhcccc
Confidence 99865321111000 0 00111 12 2578999999999999999999988775444
No 194
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.10 E-value=3.1e-10 Score=90.19 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=67.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.++||||+...... ....+.. .+++++++|+.......................+.|+++|+||+|+
T Consensus 44 ~~~~~l~D~~g~~~~~~~------~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~ 114 (157)
T cd00882 44 KVKLQIWDTAGQERFRSL------RRLYYRG---ADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL 114 (157)
T ss_pred EEEEEEEecCChHHHHhH------HHHHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 447899999997652211 1112222 4678999998743222221111012233445678999999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
.... ...... ............++++|+.++.|+..+++.|.
T Consensus 115 ~~~~-~~~~~~-------------------------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 115 PEER-VVSEEE-------------------------LAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred cccc-chHHHH-------------------------HHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 6543 111110 01112233457899999999999999998874
No 195
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.10 E-value=1.7e-09 Score=108.90 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=72.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCC-EEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p-~IlVlNK~Dl 193 (284)
..+.++||||+-. ....+...+. ..+++++++|+...-.+..+- . +..+...+.| .|+|+||+|+
T Consensus 50 ~~v~~iDtPGhe~------f~~~~~~g~~---~aD~aILVVDa~~G~~~qT~e--h---l~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 50 YRLGFIDVPGHEK------FISNAIAGGG---GIDAALLVVDADEGVMTQTGE--H---LAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred EEEEEEECCCHHH------HHHHHHhhhc---cCCEEEEEEECCCCCcHHHHH--H---HHHHHHcCCCeEEEEEECCCC
Confidence 4679999999532 1222333232 246899999997532333321 1 1123346788 9999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC---CceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS---MVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~---~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
++.+ .+.... ..+.+++..++ ...++|+||++|+|++++...|.+.+..-+
T Consensus 116 v~~~-~~~~~~-----------------------~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 116 VNEE-EIKRTE-----------------------MFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred CCHH-HHHHHH-----------------------HHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 7543 222111 11223333333 367999999999999999999988776544
No 196
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.09 E-value=1.3e-09 Score=90.30 Aligned_cols=107 Identities=13% Similarity=0.253 Sum_probs=63.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
.++.+.||||+... ..+.+ .+.. .+++++++|+.. +..+ +..++..+.. ...+.|+++|.||+
T Consensus 51 ~~~~i~D~~G~~~~-------~~~~~~~~~~---~~~~v~v~d~~~---~~s~~~l~~~~~~~~~-~~~~~p~iiv~nK~ 116 (162)
T cd04106 51 VRLMLWDTAGQEEF-------DAITKAYYRG---AQACILVFSTTD---RESFEAIESWKEKVEA-ECGDIPMVLVQTKI 116 (162)
T ss_pred EEEEEeeCCchHHH-------HHhHHHHhcC---CCEEEEEEECCC---HHHHHHHHHHHHHHHH-hCCCCCEEEEEECh
Confidence 36889999997531 11222 2322 356788888753 3333 2333322211 12478999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
|+.... ....- ...++.+.++ ..++++||+++.|+++++..|.+
T Consensus 117 Dl~~~~-~v~~~-------------------------~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 117 DLLDQA-VITNE-------------------------EAEALAKRLQ-LPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred hccccc-CCCHH-------------------------HHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHH
Confidence 986533 11100 0011123333 37999999999999999988864
No 197
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.09 E-value=1.9e-09 Score=92.56 Aligned_cols=111 Identities=15% Similarity=0.198 Sum_probs=63.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh----cCCCEEEEe
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ----LELPHVNIL 188 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~----~~~p~IlVl 188 (284)
+..+.+.||||+.. ...+... +.. .++++|++|++.. ..+- .+...+..+.. .+.|.++|.
T Consensus 60 ~~~~~i~D~~Gq~~-------~~~~~~~~~~~---a~~iI~V~D~s~~---~s~~-~~~~~l~~~l~~~~~~~~piilv~ 125 (181)
T PLN00223 60 NISFTVWDVGGQDK-------IRPLWRHYFQN---TQGLIFVVDSNDR---DRVV-EARDELHRMLNEDELRDAVLLVFA 125 (181)
T ss_pred CEEEEEEECCCCHH-------HHHHHHHHhcc---CCEEEEEEeCCcH---HHHH-HHHHHHHHHhcCHhhCCCCEEEEE
Confidence 34689999999743 1122222 322 4689999998643 3321 11112222221 368999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
||+|+.... ...++. +.+. +... ....++++||++|+|+.++++.|.+.+
T Consensus 126 NK~Dl~~~~-~~~~~~--------~~l~-----------------l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 126 NKQDLPNAM-NAAEIT--------DKLG-----------------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred ECCCCCCCC-CHHHHH--------HHhC-----------------ccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 999985432 111111 0000 0000 112467899999999999999887654
No 198
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.09 E-value=4.1e-10 Score=113.56 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.++||||+.+..... ..+++.+........+++++++|++...+.... .....+.++|+++|+||+|+
T Consensus 40 ~~~i~lvDtPG~~~~~~~s-~~e~v~~~~l~~~~aDvvI~VvDat~ler~l~l-------~~ql~~~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 40 GEDIEIVDLPGIYSLTTFS-LEEEVARDYLLNEKPDLVVNVVDASNLERNLYL-------TLQLLELGIPMILALNLVDE 111 (591)
T ss_pred CeEEEEEECCCccccCccc-hHHHHHHHHHhhcCCCEEEEEecCCcchhhHHH-------HHHHHhcCCCEEEEEehhHH
Confidence 4468999999987644322 223343333222235789999999764322111 12234578999999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
.+++ .+..-. .++-+..+ ..++|+||++|+|++++++.+.+...+++
T Consensus 112 ~~~~-~i~~d~--------------------------~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~~~~~~ 158 (591)
T TIGR00437 112 AEKK-GIRIDE--------------------------EKLEERLG-VPVVPTSATEGRGIERLKDAIRKAIGLKE 158 (591)
T ss_pred HHhC-CChhhH--------------------------HHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHhhcch
Confidence 6433 221000 01112223 68999999999999999999998766554
No 199
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.09 E-value=1.6e-09 Score=89.68 Aligned_cols=111 Identities=9% Similarity=0.134 Sum_probs=65.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+.... .+....- ...+++++++|+....+... +..++..+.... ..+.|.++|.||+|+
T Consensus 49 ~~~~l~D~~g~~~~~-------~~~~~~~--~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~~iv~nK~D~ 118 (161)
T cd01863 49 VKLAIWDTAGQERFR-------TLTSSYY--RGAQGVILVYDVTRRDTFTN-LETWLNELETYSTNNDIVKMLVGNKIDK 118 (161)
T ss_pred EEEEEEECCCchhhh-------hhhHHHh--CCCCEEEEEEECCCHHHHHh-HHHHHHHHHHhCCCCCCcEEEEEECCcc
Confidence 467999999964311 1112121 12467999999864322222 333433333332 357899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
........+. .++.... -..++++||++|+|++++++.+.+.
T Consensus 119 ~~~~~~~~~~---------------------------~~~~~~~-~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 119 ENREVTREEG---------------------------LKFARKH-NMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cccccCHHHH---------------------------HHHHHHc-CCEEEEEecCCCCCHHHHHHHHHHh
Confidence 6322011111 0111222 2579999999999999999988764
No 200
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.09 E-value=1.4e-09 Score=105.43 Aligned_cols=112 Identities=20% Similarity=0.309 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCC--CCCH-HHHHHHHHHHHHHHHhcCC-CEEEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF--ITDV-TKFISGCMASLSAMVQLEL-PHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~--~~~~-~~~i~~~l~~l~~~~~~~~-p~IlVlN 189 (284)
++++.++||||+.. | ...+...+. ..+++++++|+.. ...+ ......+ ....+. |.++|+|
T Consensus 83 ~~~i~liDtpG~~~-~-----~~~~~~~~~---~aD~~ilVvDa~~~~~~~~~~~~~~~~------~~~~~~~~iivviN 147 (425)
T PRK12317 83 KYYFTIVDCPGHRD-F-----VKNMITGAS---QADAAVLVVAADDAGGVMPQTREHVFL------ARTLGINQLIVAIN 147 (425)
T ss_pred CeEEEEEECCCccc-c-----hhhHhhchh---cCCEEEEEEEcccCCCCCcchHHHHHH------HHHcCCCeEEEEEE
Confidence 56899999999633 1 122222232 3578999999975 2111 1111111 123454 5889999
Q ss_pred CCccccch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcccHHH---------
Q 023298 190 KMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY--------- 255 (284)
Q Consensus 190 K~Dll~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~l~~--------- 255 (284)
|+|+.... ..+... ...+.+++..+++ ..++|+||++|+|+++
T Consensus 148 K~Dl~~~~~~~~~~~-----------------------~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~~~~wy~ 204 (425)
T PRK12317 148 KMDAVNYDEKRYEEV-----------------------KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSENMPWYN 204 (425)
T ss_pred ccccccccHHHHHHH-----------------------HHHHHHHHHhhCCCcCcceEEEeecccCCCccccccCCCccc
Confidence 99987421 011111 1122333344443 5799999999999986
Q ss_pred ---HHHHHHHh
Q 023298 256 ---VLSQIDNC 263 (284)
Q Consensus 256 ---Ll~~I~~~ 263 (284)
|++.|+..
T Consensus 205 g~~L~~~l~~~ 215 (425)
T PRK12317 205 GPTLLEALDNL 215 (425)
T ss_pred HHHHHHHHhcC
Confidence 77777653
No 201
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.09 E-value=2.3e-09 Score=89.81 Aligned_cols=111 Identities=9% Similarity=0.152 Sum_probs=64.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh---cCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ---LELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~---~~~p~IlVlNK 190 (284)
..+.++||||+.... .+.+. +.. .+++++++|.....+... +..++..+..... .+.|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~~-------~~~~~~~~~---~~~~ilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~~~piilv~nK 117 (165)
T cd04140 49 CTLQITDTTGSHQFP-------AMQRLSISK---GHAFILVYSVTSKQSLEE-LKPIYELICEIKGNNIEKIPIMLVGNK 117 (165)
T ss_pred EEEEEEECCCCCcch-------HHHHHHhhc---CCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcCCCCCCCEEEEEEC
Confidence 367899999986421 12221 222 356778888753322111 3333332322221 46899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+|+.... ++.... . ......++ ..++++||++|+|++++++.|.+.
T Consensus 118 ~Dl~~~~-~v~~~~----------------------~---~~~~~~~~-~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 118 CDESHKR-EVSSNE----------------------G---AACATEWN-CAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ccccccC-eecHHH----------------------H---HHHHHHhC-CcEEEeecCCCCCHHHHHHHHHhc
Confidence 9986432 211100 0 01112233 578999999999999999988653
No 202
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.08 E-value=2.2e-09 Score=109.22 Aligned_cols=113 Identities=20% Similarity=0.272 Sum_probs=66.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHH-HHHHHHHHHHHHHHhcC-CCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLE-LPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~-~~i~~~l~~l~~~~~~~-~p~IlVlNK~ 191 (284)
+.+++|+||||+.. ....+...+.. .+++++++|+.....+. .....+ ....+ .|.|+|+||+
T Consensus 103 ~~~~~liDtPG~~~------f~~~~~~~~~~---aD~~llVvda~~g~~~~t~e~~~~------~~~~~~~~iivvvNK~ 167 (632)
T PRK05506 103 KRKFIVADTPGHEQ------YTRNMVTGAST---ADLAIILVDARKGVLTQTRRHSFI------ASLLGIRHVVLAVNKM 167 (632)
T ss_pred CceEEEEECCChHH------HHHHHHHHHHh---CCEEEEEEECCCCccccCHHHHHH------HHHhCCCeEEEEEEec
Confidence 56899999999532 22334444433 57899999997542221 111111 11234 4678899999
Q ss_pred ccccc-hhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC--ceEEEEeccCcccHH------------HH
Q 023298 192 DLVTN-KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIR------------YV 256 (284)
Q Consensus 192 Dll~~-~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~--~~~ipiSa~~~~~l~------------~L 256 (284)
|+++. +..+.+. ...+.+++..+++ ..++|+||++|+|+. .|
T Consensus 168 D~~~~~~~~~~~i-----------------------~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL 224 (632)
T PRK05506 168 DLVDYDQEVFDEI-----------------------VADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSL 224 (632)
T ss_pred ccccchhHHHHHH-----------------------HHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHH
Confidence 99742 2111111 1122334445555 569999999999987 47
Q ss_pred HHHHHHhc
Q 023298 257 LSQIDNCI 264 (284)
Q Consensus 257 l~~I~~~l 264 (284)
++.++...
T Consensus 225 ~~~l~~~~ 232 (632)
T PRK05506 225 LEHLETVE 232 (632)
T ss_pred HHHHhcCC
Confidence 77776653
No 203
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.08 E-value=2.2e-09 Score=88.55 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=34.0
Q ss_pred EEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 23 CVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 23 ~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
+.-|.| +||||++.+++.+++.+|.+|++||+|||.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~ 42 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN 42 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 345667 99999999999999999999999999998864
No 204
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.08 E-value=3e-09 Score=90.94 Aligned_cols=122 Identities=14% Similarity=0.096 Sum_probs=63.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~D 192 (284)
..+.++||||+... ..+.. .+.. .+.+++++|+....+... ....+..+.... ..+.|+++|.||+|
T Consensus 63 ~~~~l~D~~G~~~~-------~~~~~~~~~~---ad~iilV~D~~~~~s~~~-~~~~~~~i~~~~~~~~~pvivv~NK~D 131 (190)
T cd00879 63 IKFKTFDLGGHEQA-------RRLWKDYFPE---VDGIVFLVDAADPERFQE-SKEELDSLLSDEELANVPFLILGNKID 131 (190)
T ss_pred EEEEEEECCCCHHH-------HHHHHHHhcc---CCEEEEEEECCcHHHHHH-HHHHHHHHHcCccccCCCEEEEEeCCC
Confidence 36789999996541 11212 2322 367899999864321111 112222111111 24689999999999
Q ss_pred cccch--hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-CCceEEEEeccCcccHHHHHHHHHHh
Q 023298 193 LVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 193 ll~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+.... .++..++. ... ....+.....+.. ....+++.||++|+|++++++.+...
T Consensus 132 l~~~~~~~~~~~~~~-----------~~~-----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 132 LPGAVSEEELRQALG-----------LYG-----TTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CCCCcCHHHHHHHhC-----------ccc-----ccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 85311 01222111 000 0000000011111 12568999999999999999988764
No 205
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.08 E-value=1.6e-09 Score=105.96 Aligned_cols=114 Identities=16% Similarity=0.261 Sum_probs=67.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-------CHHHHHHHHHHHHHHHHhcCCCE-E
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-------DVTKFISGCMASLSAMVQLELPH-V 185 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-------~~~~~i~~~l~~l~~~~~~~~p~-I 185 (284)
++.+.||||||+.. ....+...+. ..++++++||+...- .+... ..+.....++.|+ |
T Consensus 84 ~~~i~lIDtPGh~~------f~~~~~~g~~---~aD~ailVVda~~G~~e~~~~~~~qT~-----eh~~~~~~~gi~~ii 149 (446)
T PTZ00141 84 KYYFTIIDAPGHRD------FIKNMITGTS---QADVAILVVASTAGEFEAGISKDGQTR-----EHALLAFTLGVKQMI 149 (446)
T ss_pred CeEEEEEECCChHH------HHHHHHHhhh---hcCEEEEEEEcCCCceecccCCCccHH-----HHHHHHHHcCCCeEE
Confidence 56889999999443 2333433343 357889999997421 11111 0111233578886 5
Q ss_pred EEecCCcccc---chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcccHHH---
Q 023298 186 NILSKMDLVT---NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY--- 255 (284)
Q Consensus 186 lVlNK~Dll~---~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~l~~--- 255 (284)
+++||+|... ++..+. .....|.+.+...++ ..|+|+|+.+|+|+.+
T Consensus 150 v~vNKmD~~~~~~~~~~~~-----------------------~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~ 206 (446)
T PTZ00141 150 VCINKMDDKTVNYSQERYD-----------------------EIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSD 206 (446)
T ss_pred EEEEccccccchhhHHHHH-----------------------HHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCC
Confidence 8999999521 111121 222233444454444 6799999999999964
Q ss_pred ---------HHHHHHHhc
Q 023298 256 ---------VLSQIDNCI 264 (284)
Q Consensus 256 ---------Ll~~I~~~l 264 (284)
|++.++...
T Consensus 207 ~~~Wy~G~tL~~~l~~~~ 224 (446)
T PTZ00141 207 NMPWYKGPTLLEALDTLE 224 (446)
T ss_pred CCcccchHHHHHHHhCCC
Confidence 888887653
No 206
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.07 E-value=1.7e-09 Score=90.49 Aligned_cols=106 Identities=10% Similarity=0.175 Sum_probs=63.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
.++-+.||||+... ..+.+. +.. .+++++++|+... ..+ +..++..+... ..+.|+++|.||+
T Consensus 49 ~~~~i~Dt~G~~~~-------~~~~~~~~~~---~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~ 114 (161)
T cd04124 49 ILVDFWDTAGQERF-------QTMHASYYHK---AHACILVFDVTRK---ITYKNLSKWYEELREY-RPEIPCIVVANKI 114 (161)
T ss_pred EEEEEEeCCCchhh-------hhhhHHHhCC---CCEEEEEEECCCH---HHHHHHHHHHHHHHHh-CCCCcEEEEEECc
Confidence 35778999997541 112222 222 4689999998633 222 33333322211 1368999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+.... ..+. .++.+.++ ..++++||++|.|++++++.+.+..
T Consensus 115 Dl~~~~--~~~~---------------------------~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 115 DLDPSV--TQKK---------------------------FNFAEKHN-LPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred cCchhH--HHHH---------------------------HHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 984211 0000 01112222 5789999999999999999988654
No 207
>PLN03110 Rab GTPase; Provisional
Probab=99.06 E-value=2.5e-09 Score=94.45 Aligned_cols=113 Identities=14% Similarity=0.087 Sum_probs=66.8
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
++-+.||||+... ..+...... ..+.+++++|.....+- ..+..++..+......+.|+++|.||+|+..
T Consensus 62 ~l~l~Dt~G~~~~-------~~~~~~~~~--~~~~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 62 KAQIWDTAGQERY-------RAITSAYYR--GAVGALLVYDITKRQTF-DNVQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred EEEEEECCCcHHH-------HHHHHHHhC--CCCEEEEEEECCChHHH-HHHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 5678899997541 112222211 24678899998643221 1133444333333334789999999999854
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.. ...... ...+ + ..+ ...++++||++|.|++++++.+.+.+.
T Consensus 132 ~~-~~~~~~------------------~~~l----~---~~~-~~~~~e~SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 132 LR-SVAEED------------------GQAL----A---EKE-GLSFLETSALEATNVEKAFQTILLEIY 174 (216)
T ss_pred cc-CCCHHH------------------HHHH----H---HHc-CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 32 111100 0011 1 223 368999999999999999999876653
No 208
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.06 E-value=1.6e-09 Score=92.28 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.+.||||+-.... +.+.. ....+++++++|.....+.......++..+... ..+.|.++|.||+|+.
T Consensus 49 ~~l~i~Dt~G~~~~~~-------~~~~~--~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~ 118 (174)
T cd01871 49 VNLGLWDTAGQEDYDR-------LRPLS--YPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 118 (174)
T ss_pred EEEEEEECCCchhhhh-------hhhhh--cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhc
Confidence 3678999999754211 11111 112468899999864322222112233322222 2368999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
..+...+...+.. ...-. .....++.++++...++++||++|+|++++++.+.+.
T Consensus 119 ~~~~~~~~~~~~~--------~~~v~------~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 119 DDKDTIEKLKEKK--------LTPIT------YPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cChhhHHHHhhcc--------CCCCC------HHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 4331222111100 00000 0011233345665689999999999999999988764
No 209
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.06 E-value=2.1e-09 Score=102.84 Aligned_cols=152 Identities=10% Similarity=0.180 Sum_probs=85.4
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhh
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 94 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~ 94 (284)
..+|+.++++||+ |||||++..||.++...|++|.+++.||+.-.. +..+.+..+. .++ | +..+.
T Consensus 238 ~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaA-------vEQLk~yae~---lgi-p---v~v~~ 303 (436)
T PRK11889 238 EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGT-------VQQLQDYVKT---IGF-E---VIAVR 303 (436)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHH-------HHHHHHHhhh---cCC-c---EEecC
Confidence 3567889999999 999999999999999999999999999986311 1111111111 111 1 11000
Q ss_pred HhhhhcHHHHHHHHhhccC---CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHH
Q 023298 95 EHLEDNLDDWLAEELDNYL---DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 171 (284)
Q Consensus 95 e~~~~~~~~~l~~~l~~~~---~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l 171 (284)
. ..-+.+.++... ++++|||||||... ........+.+.+... ..+-+++++++.... .+. ....
T Consensus 304 -----d-~~~L~~aL~~lk~~~~~DvVLIDTaGRs~--kd~~lm~EL~~~lk~~-~PdevlLVLsATtk~--~d~-~~i~ 371 (436)
T PRK11889 304 -----D-EAAMTRALTYFKEEARVDYILIDTAGKNY--RASETVEEMIETMGQV-EPDYICLTLSASMKS--KDM-IEII 371 (436)
T ss_pred -----C-HHHHHHHHHHHHhccCCCEEEEeCccccC--cCHHHHHHHHHHHhhc-CCCeEEEEECCccCh--HHH-HHHH
Confidence 0 011222332221 46999999999754 2222334444444322 234567778875332 221 1111
Q ss_pred HHHHHHHhcCCCEEEEecCCccccch
Q 023298 172 ASLSAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 172 ~~l~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
..+... -..=++++|.|-..+-
T Consensus 372 ---~~F~~~-~idglI~TKLDET~k~ 393 (436)
T PRK11889 372 ---TNFKDI-HIDGIVFTKFDETASS 393 (436)
T ss_pred ---HHhcCC-CCCEEEEEcccCCCCc
Confidence 112223 3456889999986543
No 210
>COG2262 HflX GTPases [General function prediction only]
Probab=99.06 E-value=2.6e-09 Score=101.56 Aligned_cols=120 Identities=18% Similarity=0.211 Sum_probs=84.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.+.++-||=|++...+| .+...|...|++...+++++++||++.. .....+......+.-+--...|+|.|+||+|+
T Consensus 239 g~~vlLtDTVGFI~~LP~-~LV~AFksTLEE~~~aDlllhVVDaSdp-~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPH-PLVEAFKSTLEEVKEADLLLHVVDASDP-EILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred CceEEEecCccCcccCCh-HHHHHHHHHHHHhhcCCEEEEEeecCCh-hHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 457899999999876653 4456666677766667899999999744 22333444444444443356899999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+.+. .....+ +.... ..++|||++|.|++.|.+.|.+.++..
T Consensus 317 ~~~~-~~~~~~------------------------------~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 317 LEDE-EILAEL------------------------------ERGSP-NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred cCch-hhhhhh------------------------------hhcCC-CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 8755 211111 12222 789999999999999999999998843
No 211
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.06 E-value=6.4e-09 Score=95.18 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=77.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+... .......+.. .+++++++|+...... ...+. ......++|.++++||+|
T Consensus 70 ~~~i~liDTPG~~df------~~~~~~~l~~---aD~~IlVvda~~g~~~~~~~i~------~~~~~~~~P~iivvNK~D 134 (267)
T cd04169 70 DCVINLLDTPGHEDF------SEDTYRTLTA---VDSAVMVIDAAKGVEPQTRKLF------EVCRLRGIPIITFINKLD 134 (267)
T ss_pred CEEEEEEECCCchHH------HHHHHHHHHH---CCEEEEEEECCCCccHHHHHHH------HHHHhcCCCEEEEEECCc
Confidence 568999999997541 1223334443 3678999999653222 22222 222346899999999999
Q ss_pred cccchh-----hhhhhc--------------------------------C---------cc-hHHHHHHhhhc-------
Q 023298 193 LVTNKK-----EIEDYL--------------------------------N---------PE-SQFLLSELNQH------- 218 (284)
Q Consensus 193 ll~~~~-----~l~~~l--------------------------------~---------~~-~~~l~~~l~~~------- 218 (284)
+..... ++.+.+ . .. ++.+.+.+.+.
T Consensus 135 ~~~a~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~e~~~e~~~~l~e~ 214 (267)
T cd04169 135 REGRDPLELLDEIEEELGIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDDPKLDELGGDLAEQ 214 (267)
T ss_pred cCCCCHHHHHHHHHHHHCCCceeEEecccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccHHHHHhcCHHHHHH
Confidence 854321 111100 0 00 21222222211
Q ss_pred ----chhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 219 ----MAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 219 ----~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
......++...+.+.+..-.+..++.-||.++.|+..|++.|..++|.
T Consensus 215 ~~e~~~~~~~~~~~~~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~ 266 (267)
T cd04169 215 LREELELLEGAGPEFDQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPA 266 (267)
T ss_pred HhCCCccchhhhHHHhHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCC
Confidence 111111233333444455556777778999999999999999999874
No 212
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.06 E-value=7.1e-09 Score=90.99 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=99.9
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcC----cccCchhhh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELG----LGPNGGLIY 92 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~----lgPng~l~~ 92 (284)
+++.+.++|+. ||||||..++...+. .+.++.++.-|+..+ + |-.. +++.+ ...+|.+ .
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~~~---~----D~~~-------~~~~~~~~~~l~~gci-c 84 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVITK---F----DAER-------LRKYGAPAIQINTGKE-C 84 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCCCc---c----cHHH-------HHHcCCcEEEEcCCCc-c
Confidence 68889999999 999999999998765 356999999887532 1 1111 11111 1134332 2
Q ss_pred hhHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHH
Q 023298 93 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 172 (284)
Q Consensus 93 ~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~ 172 (284)
|+... ...+.+. .+... +.++|+|+|.|.+.. ... + .+.. ...+.++|+..... .+...
T Consensus 85 ~~~~~--~~~~~l~-~~~~~-~~d~IiIEt~G~l~~--~~~----~--~~~~----~~~i~Vvd~~~~d~---~~~~~-- 143 (207)
T TIGR00073 85 HLDAH--MVAHALE-DLPLD-DIDLLFIENVGNLVC--PAD----F--DLGE----HMRVVLLSVTEGDD---KPLKY-- 143 (207)
T ss_pred cCChH--HHHHHHH-HhccC-CCCEEEEecCCCcCC--Ccc----c--cccc----CeEEEEEecCcccc---hhhhh--
Confidence 32210 0101121 22211 569999999993221 000 0 0111 23345777753321 11110
Q ss_pred HHHHHHhcCCCEEEEecCCccccchh-hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcc
Q 023298 173 SLSAMVQLELPHVNILSKMDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES 251 (284)
Q Consensus 173 ~l~~~~~~~~p~IlVlNK~Dll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~ 251 (284)
....+.|.++|+||+|+..... ...+..+ .+. +......++++||+++.
T Consensus 144 ----~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~-----------------------~l~---~~~~~~~i~~~Sa~~g~ 193 (207)
T TIGR00073 144 ----PGMFKEADLIVINKADLAEAVGFDVEKMKA-----------------------DAK---KINPEAEIILMSLKTGE 193 (207)
T ss_pred ----HhHHhhCCEEEEEHHHccccchhhHHHHHH-----------------------HHH---HhCCCCCEEEEECCCCC
Confidence 0123578999999999975320 1211110 011 11234789999999999
Q ss_pred cHHHHHHHHHHh
Q 023298 252 SIRYVLSQIDNC 263 (284)
Q Consensus 252 ~l~~Ll~~I~~~ 263 (284)
|++.+++.+.+.
T Consensus 194 gv~~l~~~i~~~ 205 (207)
T TIGR00073 194 GLDEWLEFLEGQ 205 (207)
T ss_pred CHHHHHHHHHHh
Confidence 999999998764
No 213
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.06 E-value=6e-09 Score=90.54 Aligned_cols=109 Identities=12% Similarity=0.170 Sum_probs=64.8
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.+.++||||+... ..+... +.. .+++++++|+.. +..| +..++..+... ....|.++|.||+|
T Consensus 56 ~l~l~D~~G~~~~-------~~~~~~~~~~---a~~iilv~D~~~---~~s~~~~~~~~~~i~~~-~~~~piivVgNK~D 121 (199)
T cd04110 56 KLQIWDTAGQERF-------RTITSTYYRG---THGVIVVYDVTN---GESFVNVKRWLQEIEQN-CDDVCKVLVGNKND 121 (199)
T ss_pred EEEEEeCCCchhH-------HHHHHHHhCC---CcEEEEEEECCC---HHHHHHHHHHHHHHHHh-CCCCCEEEEEECcc
Confidence 5689999997431 112222 222 357899999863 3333 33333322221 23579999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+...+ ..... . . .++...++ ..++++||++|.|++++++.|.+.+-
T Consensus 122 l~~~~-~~~~~------~------------~-------~~~~~~~~-~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 122 DPERK-VVETE------D------------A-------YKFAGQMG-ISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred ccccc-ccCHH------H------------H-------HHHHHHcC-CEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 86432 11100 0 0 11112233 67999999999999999998877653
No 214
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.06 E-value=2.6e-09 Score=103.73 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=38.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHH-hcCCceEEEecCcCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCE-TVRRTMHIVNLDPAAE 59 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~-~~g~~v~iVdLDPq~~ 59 (284)
+|.+++++|++ |||||+|.+||.++. +.|++|++|++|+...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 48899999999 999999999999987 5899999999998664
No 215
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.06 E-value=2.1e-09 Score=84.78 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=33.9
Q ss_pred EEEECC-C-CcHHHHHHHHHHHHHhc-CCceEEEecCcCCC
Q 023298 22 KCVFSP-P-PNQSTYCSSLYRHCETV-RRTMHIVNLDPAAE 59 (284)
Q Consensus 22 ~~viG~-~-sGKTT~~~~La~~l~~~-g~~v~iVdLDPq~~ 59 (284)
+.|+|. | +||||++.+|+..+++. |++|+++|+|||.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~ 42 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG 42 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC
Confidence 455665 5 99999999999999998 99999999999975
No 216
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.06 E-value=1.4e-09 Score=112.52 Aligned_cols=159 Identities=11% Similarity=0.003 Sum_probs=87.2
Q ss_pred cCceEEEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC----CCCCccccccc----cccHHHHh-----hh
Q 023298 17 YALVIKCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN----FDYPVAMDIRE----LISLEDVM-----EE 81 (284)
Q Consensus 17 ~~~~~~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~----~~~~~~~dir~----~i~~~~vm-----~~ 81 (284)
.+++++.|+++. +||||+|.|||..+++.|+||++||+||+... +.......+.+ -.++++++ ++
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~ 623 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREVSGLLDLLAGLRSLLLDLTASGAAS 623 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCcccCChHHHHcCCccHHHHhccCCCCC
Confidence 355677788774 99999999999999999999999999999642 12111111111 12233322 23
Q ss_pred cCcccCchhhhh-hHhhh-hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCC
Q 023298 82 LGLGPNGGLIYC-MEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 159 (284)
Q Consensus 82 ~~lgPng~l~~~-~e~~~-~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~ 159 (284)
..+.|.|..... .+.+. ..+.+.+. .+.+ +++||||||||...... ...+.. ..+.+++++....
T Consensus 624 l~~l~~g~~~~~~~~ll~~~~~~~~l~-~l~~--~yD~IiID~pp~~~~~d--------~~~l~~--~~D~vl~v~~~~~ 690 (754)
T TIGR01005 624 LPMLDSGLFPHGITELLASPAMFSLVI-HARL--YSDCVVVDVGTADPVRD--------MRAAAR--LAIIMLLVTAYDR 690 (754)
T ss_pred eeEecCCCCCCCHHHHhccHHHHHHHH-HHHh--hCCEEEEcCCCcchhHH--------HHHhhh--hCCeEEEEEEeCc
Confidence 455565543221 22222 22222222 3332 68999999999765211 111221 2345666654322
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCE-EEEecCCcc
Q 023298 160 ITDVTKFISGCMASLSAMVQLELPH-VNILSKMDL 193 (284)
Q Consensus 160 ~~~~~~~i~~~l~~l~~~~~~~~p~-IlVlNK~Dl 193 (284)
. +..-+.. ++..+.+.+.++ -+|+|++|.
T Consensus 691 ~--~~~~~~~---~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 691 V--VVECGRA---DAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred e--eHHHHHH---HHHHHHhcCCceEEEEecCCCh
Confidence 2 2222222 233344455554 588999985
No 217
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.06 E-value=2.5e-09 Score=89.85 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=65.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK 190 (284)
..+-++||||+.... . +.+. +.. .+.+++++|... +..+ +..+...+.... ..++|.++|.||
T Consensus 49 ~~~~i~Dt~G~~~~~---~----~~~~~~~~---~~~~vlv~~~~~---~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK 115 (168)
T cd04177 49 CDLEILDTAGTEQFT---A----MRELYIKS---GQGFLLVYSVTS---EASLNELGELREQVLRIKDSDNVPMVLVGNK 115 (168)
T ss_pred EEEEEEeCCCcccch---h----hhHHHHhh---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCCCCCCEEEEEEC
Confidence 356789999976421 1 2222 222 245677777653 3222 233323222222 347999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+...+ .+..-. ...+...++...++++||++|.|++++++.+.+.+
T Consensus 116 ~D~~~~~-~~~~~~-------------------------~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 116 ADLEDDR-QVSRED-------------------------GVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred hhccccC-ccCHHH-------------------------HHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9986433 111000 01112345557899999999999999999987643
No 218
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.05 E-value=3.9e-09 Score=93.65 Aligned_cols=112 Identities=15% Similarity=0.067 Sum_probs=66.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK 190 (284)
..++.++||||+.. + +....... ..+++++++|+.. +..| +..++..+.... ..+.|+|+|.||
T Consensus 49 ~~~l~i~Dt~G~~~-~--------~~~~~~~~-~ad~iilV~d~td---~~S~~~~~~~~~~l~~~~~~~~~piilV~NK 115 (221)
T cd04148 49 ESTLVVIDHWEQEM-W--------TEDSCMQY-QGDAFVVVYSVTD---RSSFERASELRIQLRRNRQLEDRPIILVGNK 115 (221)
T ss_pred EEEEEEEeCCCcch-H--------HHhHHhhc-CCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 34678999999751 0 11111110 2467888998863 3333 233333222221 146899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|+.... .+..-. . .++...++ ..++++||+++.|++++++.|.+.+.
T Consensus 116 ~Dl~~~~-~v~~~~------------------~-------~~~a~~~~-~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 116 SDLARSR-EVSVQE------------------G-------RACAVVFD-CKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred hhccccc-eecHHH------------------H-------HHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 9986533 211000 0 01112233 47899999999999999999987764
No 219
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=99.05 E-value=1e-09 Score=104.23 Aligned_cols=108 Identities=18% Similarity=0.233 Sum_probs=68.1
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCcccccc----ccccHHHHhh--hc---Cc
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIR----ELISLEDVME--EL---GL 84 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir----~~i~~~~vm~--~~---~l 84 (284)
+.+++-.++|+||- ||||||+.-|++-+.++|++|.+||+||+++....|..+... -.+...+.-. .+ ++
T Consensus 69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~i 148 (398)
T COG1341 69 SAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSI 148 (398)
T ss_pred hccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEecc
Confidence 45667779999999 999999999999999999999999999999976443222111 1111211100 01 22
Q ss_pred ccCchhhhhhHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccc
Q 023298 85 GPNGGLIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELF 129 (284)
Q Consensus 85 gPng~l~~~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~ 129 (284)
.|.+.....+... .+|.+..++ ..++++|||||++...
T Consensus 149 sP~~~~~~~i~~v-----~rL~~~a~~--~~~~ilIdT~GWi~G~ 186 (398)
T COG1341 149 SPQGFPGRYIAGV-----ARLVDLAKK--EADFILIDTDGWIKGW 186 (398)
T ss_pred CCCCChHHHHHHH-----HHHHHHhhc--cCCEEEEcCCCceeCc
Confidence 3554432222111 233333333 3589999999999753
No 220
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.05 E-value=5.4e-09 Score=101.00 Aligned_cols=114 Identities=15% Similarity=0.195 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcC-CCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLE-LPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~-~p~IlVlNK~D 192 (284)
..+.++||||+.. ....+...+.. .+++++++|+.... .+... ..+. .+...+ +|.++|+||+|
T Consensus 80 ~~i~liDtPGh~~------f~~~~~~g~~~---aD~aIlVVDa~~g~~~~qt~--e~l~---~l~~~gi~~iIVvvNK~D 145 (406)
T TIGR03680 80 RRVSFVDAPGHET------LMATMLSGAAL---MDGALLVIAANEPCPQPQTK--EHLM---ALEIIGIKNIVIVQNKID 145 (406)
T ss_pred cEEEEEECCCHHH------HHHHHHHHHHH---CCEEEEEEECCCCccccchH--HHHH---HHHHcCCCeEEEEEEccc
Confidence 4689999999643 12223333322 46899999997432 22111 1111 112333 46899999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+...+ ......+ .+.+++..+ ....++|+||++|+|++.|++.+.+.++.
T Consensus 146 l~~~~-~~~~~~~-----------------------~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 146 LVSKE-KALENYE-----------------------EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred cCCHH-HHHHHHH-----------------------HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 97533 2211110 111122221 13579999999999999999999997763
No 221
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.05 E-value=2.4e-08 Score=90.59 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=37.0
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
.+++.|.| +||||.+.++|.++++.|+||++||+||+.+
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~s 41 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHS 41 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCccc
Confidence 58899999 9999999999999999999999999999875
No 222
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.05 E-value=4.2e-09 Score=87.53 Aligned_cols=109 Identities=15% Similarity=0.239 Sum_probs=64.1
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecCC
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKM 191 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK~ 191 (284)
.+-+.||||+... +. +... +.. ++++++++|... +..+ +..++..+.... ..++|+++|.||+
T Consensus 50 ~l~i~Dt~G~~~~---~~----~~~~~~~~---ad~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~ 116 (163)
T cd04176 50 VLEILDTAGTEQF---AS----MRDLYIKN---GQGFIVVYSLVN---QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKV 116 (163)
T ss_pred EEEEEECCCcccc---cc----hHHHHHhh---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 4678999997542 11 2122 222 356888888753 3322 333333322222 2479999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+.... ...... . ..+...++ ..++++||++|.|+.+++..+.+.+
T Consensus 117 Dl~~~~-~~~~~~----------------------~---~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 117 DLESER-EVSSAE----------------------G---RALAEEWG-CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred cchhcC-ccCHHH----------------------H---HHHHHHhC-CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 985422 111000 0 01112233 4789999999999999999987654
No 223
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.05 E-value=2.7e-09 Score=95.18 Aligned_cols=147 Identities=14% Similarity=0.158 Sum_probs=81.0
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 97 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~ 97 (284)
|.+.+.-..| +||||.+..||..|+++|++|.+||.||+.....|.. . ..+-+-.|++-.++..+ -
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~------~------a~~~~~~~~~~~V~~~~-e 68 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAE------N------AQRPGAWPDRIEVYEAD-E 68 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHH------h------ccccCCCCCCeeEEecc-c
Confidence 3444455558 9999999999999999999999999999998665510 0 00001112211122111 0
Q ss_pred hhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCC-CCHHHHH--HHHHHH
Q 023298 98 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFI-TDVTKFI--SGCMAS 173 (284)
Q Consensus 98 ~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~-~~~~~~i--~~~l~~ 173 (284)
...+++.+. ..+.. .++||||||+|.-..+ ... +...| .+ |||...- .+-+.-. ..++..
T Consensus 69 ~~~l~~~~e-~a~~~-~~d~VlvDleG~as~~---------~~~aia~sD--lV---lIP~~~s~lD~~eA~~t~~~v~~ 132 (231)
T PF07015_consen 69 LTILEDAYE-AAEAS-GFDFVLVDLEGGASEL---------NDYAIARSD--LV---LIPMQPSQLDADEAAKTFKWVRR 132 (231)
T ss_pred hhhHHHHHH-HHHhc-CCCEEEEeCCCCCchh---------HHHHHHHCC--EE---EECCCCChHHHHHHHHHHHHHHH
Confidence 112222222 11211 4699999999965422 222 33333 22 5666432 2222221 222232
Q ss_pred HHHHHhcCCCEEEEecCCccc
Q 023298 174 LSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 174 l~~~~~~~~p~IlVlNK~Dll 194 (284)
+....+...|+-++++++...
T Consensus 133 ~~~~~~~~ip~~Vl~Tr~~~~ 153 (231)
T PF07015_consen 133 LEKAERRDIPAAVLFTRVPAA 153 (231)
T ss_pred HHHhhCCCCCeeEEEecCCcc
Confidence 333345678999999999853
No 224
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.05 E-value=3.1e-09 Score=88.75 Aligned_cols=113 Identities=15% Similarity=0.194 Sum_probs=65.3
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~--~~~~p~IlVlNK~Dl 193 (284)
.+-++||||+...+.. .....+.. .+++++++|+....+-.. +..++..+.... ..+.|.++|.||+|+
T Consensus 48 ~~~i~D~~g~~~~~~~-----~~~~~~~~---~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl 118 (165)
T cd04146 48 SLEILDTAGQQQADTE-----QLERSIRW---ADGFVLVYSITDRSSFDE-ISQLKQLIREIKKRDREIPVILVGNKADL 118 (165)
T ss_pred EEEEEECCCCcccccc-----hHHHHHHh---CCEEEEEEECCCHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECCch
Confidence 5679999997642111 01122332 367899999864322111 233333333322 237899999999997
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCc-ccHHHHHHHHHHhc
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE-SSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~-~~l~~Ll~~I~~~l 264 (284)
...+ .+..- + ..++.+.++ ..++++||++| .|+++++..+.+.+
T Consensus 119 ~~~~-~v~~~----------~---------------~~~~~~~~~-~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 119 LHYR-QVSTE----------E---------------GEKLASELG-CLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred HHhC-ccCHH----------H---------------HHHHHHHcC-CEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 5322 11100 0 011113344 57899999999 59999999987654
No 225
>PTZ00369 Ras-like protein; Provisional
Probab=99.05 E-value=5.7e-09 Score=89.80 Aligned_cols=112 Identities=13% Similarity=0.196 Sum_probs=65.5
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~Dl 193 (284)
.+-++||||+.+.. . +... +.. .+++++++|+....+- +.+..+...+.... ..+.|+++|.||+|+
T Consensus 54 ~l~i~Dt~G~~~~~---~----l~~~~~~~---~d~iilv~D~s~~~s~-~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl 122 (189)
T PTZ00369 54 LLDILDTAGQEEYS---A----MRDQYMRT---GQGFLCVYSITSRSSF-EEIASFREQILRVKDKDRVPMILVGNKCDL 122 (189)
T ss_pred EEEEEeCCCCccch---h----hHHHHhhc---CCEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 46689999976521 1 2222 222 4678899998633211 11334433332222 236799999999997
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.... .+.... . .+....++ ..++++||++|.|+++++..+.+.+.
T Consensus 123 ~~~~-~i~~~~----------------------~---~~~~~~~~-~~~~e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 123 DSER-QVSTGE----------------------G---QELAKSFG-IPFLETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred cccc-ccCHHH----------------------H---HHHHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5422 111100 0 01112233 47899999999999999998877654
No 226
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.05 E-value=3.8e-09 Score=96.33 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=37.7
Q ss_pred CceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 18 ALVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 18 ~~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
+++++.|+++ | +||||++.|||..+++.|+||++||+|++...
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~ 146 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPV 146 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCcc
Confidence 4566777777 4 99999999999999999999999999998764
No 227
>PLN03126 Elongation factor Tu; Provisional
Probab=99.04 E-value=9.5e-09 Score=101.24 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=68.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHH-HHHHHHHHHHHHHhcCCC-EEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELP-HVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~-~i~~~l~~l~~~~~~~~p-~IlVlNK~ 191 (284)
+.++.+|||||+.. ....+...+.. .+++++++|+.....+.. -.. ......++| .|+++||+
T Consensus 143 ~~~i~liDtPGh~~------f~~~~~~g~~~---aD~ailVVda~~G~~~qt~e~~------~~~~~~gi~~iIvvvNK~ 207 (478)
T PLN03126 143 NRHYAHVDCPGHAD------YVKNMITGAAQ---MDGAILVVSGADGPMPQTKEHI------LLAKQVGVPNMVVFLNKQ 207 (478)
T ss_pred CcEEEEEECCCHHH------HHHHHHHHHhh---CCEEEEEEECCCCCcHHHHHHH------HHHHHcCCCeEEEEEecc
Confidence 55889999999644 22334444433 468899999875433322 121 123356888 56789999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC----CceEEEEeccCccc---------------
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKESS--------------- 252 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~----~~~~ipiSa~~~~~--------------- 252 (284)
|++.++ +..+.+ ...+.+++...+ ...|+|+|+.+|.+
T Consensus 208 Dl~~~~-~~~~~i----------------------~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~w 264 (478)
T PLN03126 208 DQVDDE-ELLELV----------------------ELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKW 264 (478)
T ss_pred cccCHH-HHHHHH----------------------HHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCch
Confidence 997643 222211 112234444443 36799999998842
Q ss_pred ---HHHHHHHHHHhc
Q 023298 253 ---IRYVLSQIDNCI 264 (284)
Q Consensus 253 ---l~~Ll~~I~~~l 264 (284)
+..|++.|++..
T Consensus 265 y~~i~~Ll~~l~~~~ 279 (478)
T PLN03126 265 VDKIYELMDAVDSYI 279 (478)
T ss_pred hhhHHHHHHHHHHhC
Confidence 457888888764
No 228
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.04 E-value=5e-09 Score=101.46 Aligned_cols=113 Identities=13% Similarity=0.163 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-CHHHH-HHHHHHHHHHHHhcC-CCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKF-ISGCMASLSAMVQLE-LPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-~~~~~-i~~~l~~l~~~~~~~-~p~IlVlNK~ 191 (284)
+++.++||||+.. ....+...+. ..+++++++|+.... .+... .... +...+ .|.++|+||+
T Consensus 85 ~~i~liDtPG~~~------f~~~~~~~~~---~~D~~llVVDa~~~~~~~~t~~~l~~------l~~~~i~~iiVVlNK~ 149 (411)
T PRK04000 85 RRVSFVDAPGHET------LMATMLSGAA---LMDGAILVIAANEPCPQPQTKEHLMA------LDIIGIKNIVIVQNKI 149 (411)
T ss_pred cEEEEEECCCHHH------HHHHHHHHHh---hCCEEEEEEECCCCCCChhHHHHHHH------HHHcCCCcEEEEEEee
Confidence 5789999999533 1222322222 246799999997532 22221 1111 12344 4689999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
|+.+.+ ......+ .+.+++..+ ....++|+||++|+|++.|++.|.+.++.
T Consensus 150 Dl~~~~-~~~~~~~-----------------------~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 150 DLVSKE-RALENYE-----------------------QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ccccch-hHHHHHH-----------------------HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 997643 2211110 111222221 23679999999999999999999998764
No 229
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.04 E-value=7.1e-09 Score=92.92 Aligned_cols=25 Identities=8% Similarity=0.040 Sum_probs=22.4
Q ss_pred eEEEEeccCcccHHHHHHHHHHhcC
Q 023298 241 SFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 241 ~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.++++||++|.|+++|++.|.+.+.
T Consensus 202 ~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 202 NSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 5889999999999999999988764
No 230
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.04 E-value=3.8e-09 Score=88.42 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+-+.||||+.... .+...... ..+++++++|.....+-.. +..++..+......+.|.++|-||.|+.
T Consensus 49 ~~l~i~D~~g~~~~~-------~~~~~~~~--~~~~~i~v~d~~~~~sf~~-~~~~~~~~~~~~~~~~~iilvgnK~Dl~ 118 (161)
T cd04117 49 VRIQIWDTAGQERYQ-------TITKQYYR--RAQGIFLVYDISSERSYQH-IMKWVSDVDEYAPEGVQKILIGNKADEE 118 (161)
T ss_pred EEEEEEeCCCcHhHH-------hhHHHHhc--CCcEEEEEEECCCHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 356789999975411 12222211 2467888999764322111 3444443333333468999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
... .+..-. . ..+.+..+ ..++++||++|.|+++++..|.+.
T Consensus 119 ~~~-~v~~~~----------------------~---~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 119 QKR-QVGDEQ----------------------G---NKLAKEYG-MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ccc-CCCHHH----------------------H---HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 432 111100 0 01112233 678999999999999999988764
No 231
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.03 E-value=5.6e-09 Score=88.69 Aligned_cols=112 Identities=14% Similarity=0.168 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~D 192 (284)
..+.++||||+.+. ..+.+. +.. .+++++++|.....+... +..+...+.... ..+.|+++|.||+|
T Consensus 50 ~~l~i~Dt~G~~~~-------~~l~~~~~~~---~d~~ilv~d~~~~~Sf~~-~~~~~~~i~~~~~~~~~piilvgNK~D 118 (172)
T cd04141 50 ALLDILDTAGQAEF-------TAMRDQYMRC---GEGFIICYSVTDRHSFQE-ASEFKKLITRVRLTEDIPLVLVGNKVD 118 (172)
T ss_pred EEEEEEeCCCchhh-------HHHhHHHhhc---CCEEEEEEECCchhHHHH-HHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 35788999998542 112222 222 357888888763322222 223333233332 24689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+.... .+..-. . .++...++ ..++++||++|.|++++++.+.+.+
T Consensus 119 l~~~~-~v~~~~----------------------~---~~~a~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 119 LESQR-QVTTEE----------------------G---RNLAREFN-CPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred hhhcC-ccCHHH----------------------H---HHHHHHhC-CEEEEEecCCCCCHHHHHHHHHHHH
Confidence 85432 111000 0 01112333 4799999999999999999887654
No 232
>PRK12739 elongation factor G; Reviewed
Probab=99.03 E-value=8.2e-09 Score=106.01 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=45.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++++.++||||++. ......+.+.. .+++++++|+...-.+ +..+.. ...+.++|.|+++||+|
T Consensus 72 ~~~i~liDTPG~~~------f~~e~~~al~~---~D~~ilVvDa~~g~~~qt~~i~~------~~~~~~~p~iv~iNK~D 136 (691)
T PRK12739 72 GHRINIIDTPGHVD------FTIEVERSLRV---LDGAVAVFDAVSGVEPQSETVWR------QADKYGVPRIVFVNKMD 136 (691)
T ss_pred CEEEEEEcCCCHHH------HHHHHHHHHHH---hCeEEEEEeCCCCCCHHHHHHHH------HHHHcCCCEEEEEECCC
Confidence 56899999999764 12234444544 3689999999754332 332322 23357899999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
+..
T Consensus 137 ~~~ 139 (691)
T PRK12739 137 RIG 139 (691)
T ss_pred CCC
Confidence 975
No 233
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.03 E-value=3.5e-09 Score=102.92 Aligned_cols=151 Identities=14% Similarity=0.212 Sum_probs=80.3
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHH--hcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhh
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCE--TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC 93 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~--~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~ 93 (284)
.+..+++++||+ |||||++.+||.++. ..|++|.+|+.||+.... +..+-++.+. .++ |-- ....
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a-------~eqL~~~a~~---~~v-p~~-~~~~ 286 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGA-------VEQLKTYAKI---MGI-PVE-VVYD 286 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHH-------HHHHHHHHHH---hCC-ceE-ccCC
Confidence 345578999999 999999999999998 467899999999986421 0001011111 111 110 0000
Q ss_pred hHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHH
Q 023298 94 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 173 (284)
Q Consensus 94 ~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~ 173 (284)
. +-+.+.+.+..++++|+|||||.... .......+...+.......-+.+++++..- +..+ ....
T Consensus 287 ~--------~~l~~~l~~~~~~DlVlIDt~G~~~~--d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l-~~~~-- 351 (424)
T PRK05703 287 P--------KELAKALEQLRDCDVILIDTAGRSQR--DKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDL-KDIY-- 351 (424)
T ss_pred H--------HhHHHHHHHhCCCCEEEEeCCCCCCC--CHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHH-HHHH--
Confidence 0 11223333333679999999997541 111222333333312223345666777422 2221 1111
Q ss_pred HHHHHhcCCCEEEEecCCccccc
Q 023298 174 LSAMVQLELPHVNILSKMDLVTN 196 (284)
Q Consensus 174 l~~~~~~~~p~IlVlNK~Dll~~ 196 (284)
..+...+ +.=++++|+|-...
T Consensus 352 -~~f~~~~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 352 -KHFSRLP-LDGLIFTKLDETSS 372 (424)
T ss_pred -HHhCCCC-CCEEEEeccccccc
Confidence 1222233 34688999997543
No 234
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.02 E-value=4.7e-09 Score=94.94 Aligned_cols=190 Identities=18% Similarity=0.250 Sum_probs=95.2
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhh---
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM--- 94 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~--- 94 (284)
-.++=|.||| +|||||+..|...+.+.|++|.++-.||....+.-. =+-|-+..++.-. -|| ..+.++
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGA---lLGDRiRM~~~~~----d~~-vfIRS~atR 100 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGA---LLGDRIRMQELSR----DPG-VFIRSMATR 100 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC------SS--GGGCHHHHT----STT-EEEEEE---
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCc---ccccHHHhcCcCC----CCC-EEEeecCcC
Confidence 3457799999 999999999999999999999999999988643311 1112222221111 111 111110
Q ss_pred ---HhhhhcHHHHHHHHhhccCCCCEEEEeCCC--CcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHH
Q 023298 95 ---EHLEDNLDDWLAEELDNYLDDDYLVFDCPG--QIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 169 (284)
Q Consensus 95 ---e~~~~~~~~~l~~~l~~~~~~~~viiDtPg--~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~ 169 (284)
.-+.....+. ...++.+ .+++|||-|-| |.|.- +. +..+.+++++-+... +.-..+..
T Consensus 101 G~lGGls~~t~~~-v~ll~aa-G~D~IiiETVGvGQsE~~------------I~--~~aD~~v~v~~Pg~G-D~iQ~~Ka 163 (266)
T PF03308_consen 101 GSLGGLSRATRDA-VRLLDAA-GFDVIIIETVGVGQSEVD------------IA--DMADTVVLVLVPGLG-DEIQAIKA 163 (266)
T ss_dssp SSHHHHHHHHHHH-HHHHHHT-T-SEEEEEEESSSTHHHH------------HH--TTSSEEEEEEESSTC-CCCCTB-T
T ss_pred CCCCCccHhHHHH-HHHHHHc-CCCEEEEeCCCCCccHHH------------HH--HhcCeEEEEecCCCc-cHHHHHhh
Confidence 0011111111 1234444 78999999998 44411 21 223444444433221 11111111
Q ss_pred HHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhc--cCC-ceEEEEe
Q 023298 170 CMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YSM-VSFMPLD 246 (284)
Q Consensus 170 ~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~--~~~-~~~ipiS 246 (284)
-+ ++..=|+|+||+|.-..+....++. .+.++... .+. ..++..|
T Consensus 164 Gi--------mEiaDi~vVNKaD~~gA~~~~~~l~------------------------~~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 164 GI--------MEIADIFVVNKADRPGADRTVRDLR------------------------SMLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp TH--------HHH-SEEEEE--SHHHHHHHHHHHH------------------------HHHHHCSTSCTSB--EEEEEB
T ss_pred hh--------hhhccEEEEeCCChHHHHHHHHHHH------------------------HHHhhccccccCCCCCEEEEE
Confidence 11 2346799999999533221111110 11112121 122 5799999
Q ss_pred ccCcccHHHHHHHHHHhcC
Q 023298 247 LRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 247 a~~~~~l~~Ll~~I~~~l~ 265 (284)
|.+++|+++|.+.|++...
T Consensus 212 A~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 212 ALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHH
Confidence 9999999999999998643
No 235
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=3e-09 Score=99.18 Aligned_cols=174 Identities=14% Similarity=0.200 Sum_probs=110.4
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 100 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~ 100 (284)
+=|.|-- |||||++++|+.. -+...+|-.||..+-..+ ++||-++-.+.+=
T Consensus 10 ~GiLGHvDSGKTtLarals~~-----~STaAFDk~pqS~eRgiT-----------------LDLGFS~~~v~~p------ 61 (522)
T KOG0461|consen 10 LGILGHVDSGKTTLARALSEL-----GSTAAFDKHPQSTERGIT-----------------LDLGFSTMTVLSP------ 61 (522)
T ss_pred eeeEeeccCchHHHHHHHHhh-----ccchhhccCCccccccee-----------------Eeecceeeecccc------
Confidence 4467888 9999999999885 346677888887652221 2333222111110
Q ss_pred HHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 023298 101 LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 179 (284)
Q Consensus 101 ~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~ 179 (284)
..|-+-..-|+.+|||||+.. +++.+- .+...++++.+||+.....+..- .+ +..-..
T Consensus 62 ------arLpq~e~lq~tlvDCPGHas----------LIRtiiggaqiiDlm~lviDv~kG~QtQtA--Ec---Liig~~ 120 (522)
T KOG0461|consen 62 ------ARLPQGEQLQFTLVDCPGHAS----------LIRTIIGGAQIIDLMILVIDVQKGKQTQTA--EC---LIIGEL 120 (522)
T ss_pred ------cccCccccceeEEEeCCCcHH----------HHHHHHhhhheeeeeeEEEehhcccccccc--hh---hhhhhh
Confidence 011110034899999999654 445443 44566889999999865433221 11 111223
Q ss_pred cCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC---ceEEEEeccCc----cc
Q 023298 180 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM---VSFMPLDLRKE----SS 252 (284)
Q Consensus 180 ~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~---~~~ipiSa~~~----~~ 252 (284)
+.+..|+|+||+|.+... +- .++..++..++..-++..+| ..++++||.+| ++
T Consensus 121 ~c~klvvvinkid~lpE~-qr-------------------~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~ 180 (522)
T KOG0461|consen 121 LCKKLVVVINKIDVLPEN-QR-------------------ASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEM 180 (522)
T ss_pred hccceEEEEeccccccch-hh-------------------hhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhH
Confidence 456789999999988643 11 12344667777788888766 56999999999 88
Q ss_pred HHHHHHHHHHhc
Q 023298 253 IRYVLSQIDNCI 264 (284)
Q Consensus 253 l~~Ll~~I~~~l 264 (284)
+.+|.+.+.+.+
T Consensus 181 i~eL~e~l~s~i 192 (522)
T KOG0461|consen 181 IQELKEALESRI 192 (522)
T ss_pred HHHHHHHHHHhh
Confidence 888888887664
No 236
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.01 E-value=4.7e-09 Score=90.09 Aligned_cols=115 Identities=9% Similarity=0.069 Sum_probs=64.7
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
.+-++||||+-.. ..+.+..- ...+++++++|.....+-.. +..++..+.. ...+.|+++|.||+|+..
T Consensus 51 ~l~i~D~~G~~~~-------~~~~~~~~--~~~d~iilv~d~~~~~s~~~-~~~~~~~i~~-~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 51 TLGIWDTAGSERY-------EAMSRIYY--RGAKAAIVCYDLTDSSSFER-AKFWVKELQN-LEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EEEEEECCCchhh-------hhhhHhhc--CCCCEEEEEEECCCHHHHHH-HHHHHHHHHh-cCCCCCEEEEEEcccccc
Confidence 4568899997431 11222221 12468899999864322111 2233332211 123689999999999864
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.. ....... . + .+.++...++ ..++++||++|.|++.|++.|.+.+
T Consensus 120 ~~-~~~~~v~--~----~---------------~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 120 QD-RSLRQVD--F----H---------------DVQDFADEIK-AQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred cc-cccCccC--H----H---------------HHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 32 1111110 0 0 0011112233 5689999999999999999988765
No 237
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.01 E-value=3.5e-09 Score=93.19 Aligned_cols=110 Identities=13% Similarity=0.231 Sum_probs=65.7
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEecCC
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILSKM 191 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlNK~ 191 (284)
++.+.||||+... ..+... +.. .+++++++|... +..| +..++..+..... ...|+++|.||+
T Consensus 53 ~l~i~Dt~G~~~~-------~~~~~~~~~~---~d~iilv~D~~~---~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~ 119 (211)
T cd04111 53 KLQLWDTAGQERF-------RSITRSYYRN---SVGVLLVFDITN---RESFEHVHDWLEEARSHIQPHRPVFILVGHKC 119 (211)
T ss_pred EEEEEeCCcchhH-------HHHHHHHhcC---CcEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcc
Confidence 5789999997431 112222 222 467889999863 3333 3334333222222 346789999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+...+ ....-. . .++...++ ..++.+||++|.|++++++.|.+.+.
T Consensus 120 Dl~~~~-~v~~~~------------------~-------~~~~~~~~-~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 120 DLESQR-QVTREE------------------A-------EKLAKDLG-MKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred cccccc-ccCHHH------------------H-------HHHHHHhC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 986532 111000 0 11113344 68999999999999999999987654
No 238
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.01 E-value=5e-09 Score=101.10 Aligned_cols=150 Identities=14% Similarity=0.129 Sum_probs=83.5
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHH-HhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhh
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHC-ETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 94 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l-~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~ 94 (284)
.++.+++++||+ |||||+|..||.++ ...|++|.+++.|+|.....+ .+-.. .+..++ |- ....
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~e-------QLk~y---Ae~lgv-p~---~~~~ 286 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIE-------QLKRY---ADTMGM-PF---YPVK 286 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHH-------HHHHH---HHhcCC-Ce---eehH
Confidence 356779999999 99999999999865 578999999999998874321 00000 011122 11 1110
Q ss_pred HhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhc--CCCeEEEEEecCCCCCCHHHHHHHHHH
Q 023298 95 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSR--NFNVCAVYLLDSQFITDVTKFISGCMA 172 (284)
Q Consensus 95 e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~--d~~~vil~LiDa~~~~~~~~~i~~~l~ 172 (284)
+ . .-+.+.+... ++++|+|||||... ........|.+.+... ....-+++++|+..-. .. +...
T Consensus 287 ~-----~-~~l~~~l~~~-~~D~VLIDTaGr~~--rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~-~~~~-- 352 (432)
T PRK12724 287 D-----I-KKFKETLARD-GSELILIDTAGYSH--RNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HH-TLTV-- 352 (432)
T ss_pred H-----H-HHHHHHHHhC-CCCEEEEeCCCCCc--cCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HH-HHHH--
Confidence 1 1 1122233322 67999999999764 2222233343333321 1123467788885332 12 1111
Q ss_pred HHHHHHhcCCCEEEEecCCccccc
Q 023298 173 SLSAMVQLELPHVNILSKMDLVTN 196 (284)
Q Consensus 173 ~l~~~~~~~~p~IlVlNK~Dll~~ 196 (284)
....... -+.=+|++|.|-..+
T Consensus 353 -~~~f~~~-~~~glIlTKLDEt~~ 374 (432)
T PRK12724 353 -LKAYESL-NYRRILLTKLDEADF 374 (432)
T ss_pred -HHHhcCC-CCCEEEEEcccCCCC
Confidence 1122223 356788999997653
No 239
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.00 E-value=8.8e-09 Score=103.75 Aligned_cols=134 Identities=17% Similarity=0.225 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.++.|+||||+-. |. .+.. ... ..+++++++|+.....+..+-. +..+...+.|.++|+||+|+
T Consensus 69 ~~l~~iDTpG~e~-f~------~l~~~~~~---~aD~~IlVvD~~~g~~~qt~e~-----i~~l~~~~vpiIVv~NK~Dl 133 (590)
T TIGR00491 69 PGLLFIDTPGHEA-FT------NLRKRGGA---LADLAILIVDINEGFKPQTQEA-----LNILRMYKTPFVVAANKIDR 133 (590)
T ss_pred CcEEEEECCCcHh-HH------HHHHHHHh---hCCEEEEEEECCcCCCHhHHHH-----HHHHHHcCCCEEEEEECCCc
Confidence 3589999999642 21 1212 222 2468999999875434444311 12234568999999999998
Q ss_pred ccchh--hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHH---------HHHhccC-CceEEEEeccCcccHHHHHHHHH
Q 023298 194 VTNKK--EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLI---------ELVDEYS-MVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 194 l~~~~--~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~---------~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
..... .-..|++. ....-..+..........+...+. ..+++++ ...++|+||++|+|+++|+..|.
T Consensus 134 ~~~~~~~~~~~f~e~-sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~ 212 (590)
T TIGR00491 134 IPGWRSHEGRPFMES-FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLA 212 (590)
T ss_pred cchhhhccCchHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHH
Confidence 64110 01112110 000000010000011111111111 1123443 47899999999999999999886
Q ss_pred Hhc
Q 023298 262 NCI 264 (284)
Q Consensus 262 ~~l 264 (284)
...
T Consensus 213 ~l~ 215 (590)
T TIGR00491 213 GLA 215 (590)
T ss_pred HHH
Confidence 543
No 240
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.00 E-value=6.1e-09 Score=101.09 Aligned_cols=114 Identities=19% Similarity=0.289 Sum_probs=65.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC---CCHHHHHHHHHHHHHHHHhcC-CCEEEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI---TDVTKFISGCMASLSAMVQLE-LPHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~---~~~~~~i~~~l~~l~~~~~~~-~p~IlVlN 189 (284)
+.++.|+||||+-. | ...+...+. ..+++++++|+... ..+... ..+ ......+ .|+|+|+|
T Consensus 84 ~~~i~iiDtpGh~~-f-----~~~~~~~~~---~aD~~ilVvDa~~~~~~~~~~t~--~~~---~~~~~~~~~~iIVviN 149 (426)
T TIGR00483 84 KYEVTIVDCPGHRD-F-----IKNMITGAS---QADAAVLVVAVGDGEFEVQPQTR--EHA---FLARTLGINQLIVAIN 149 (426)
T ss_pred CeEEEEEECCCHHH-H-----HHHHHhhhh---hCCEEEEEEECCCCCcccCCchH--HHH---HHHHHcCCCeEEEEEE
Confidence 56789999999532 1 222333232 24789999999754 111111 000 0111233 46888999
Q ss_pred CCccccc-hhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcccHHH---------
Q 023298 190 KMDLVTN-KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY--------- 255 (284)
Q Consensus 190 K~Dll~~-~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~l~~--------- 255 (284)
|+|+... +..+... ...+.+++...++ ..|+|+||++|+|+.+
T Consensus 150 K~Dl~~~~~~~~~~~-----------------------~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~ 206 (426)
T TIGR00483 150 KMDSVNYDEEEFEAI-----------------------KKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYK 206 (426)
T ss_pred ChhccCccHHHHHHH-----------------------HHHHHHHHHHcCCCcccceEEEeeccccccccccccCCcccc
Confidence 9999742 2111111 1122333444443 6799999999999985
Q ss_pred ---HHHHHHHhc
Q 023298 256 ---VLSQIDNCI 264 (284)
Q Consensus 256 ---Ll~~I~~~l 264 (284)
|++.|+...
T Consensus 207 g~~l~~~l~~~~ 218 (426)
T TIGR00483 207 GKTLLEALDALE 218 (426)
T ss_pred chHHHHHHhcCC
Confidence 888887643
No 241
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.00 E-value=2.9e-09 Score=91.67 Aligned_cols=123 Identities=9% Similarity=0.137 Sum_probs=67.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HH-HHHHHHHHHHhcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--IS-GCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~-~~l~~l~~~~~~~~p~IlVlNK 190 (284)
..+.+.||||+-+.. . +.+ .+.. .+++++++|.. ++..| +. .++..+... ..+.|+++|.||
T Consensus 48 ~~l~i~Dt~G~~~~~---~----l~~~~~~~---a~~~ilv~dv~---~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK 113 (189)
T cd04134 48 IELSLWDTAGQEEFD---R----LRSLSYAD---TDVIMLCFSVD---SPDSLENVESKWLGEIREH-CPGVKLVLVALK 113 (189)
T ss_pred EEEEEEECCCChhcc---c----cccccccC---CCEEEEEEECC---CHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEC
Confidence 467899999975421 1 111 1212 35667666664 33333 21 233322221 237899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|+.... ....... ........ .....+....++...++++||++|.|+++++..+.+.+-
T Consensus 114 ~Dl~~~~-~~~~~~~--------~~~~~~v~-----~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 114 CDLREAR-NERDDLQ--------RYGKHTIS-----YEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred hhhccCh-hhHHHHh--------hccCCCCC-----HHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 9996543 2211110 00000000 000012234455578999999999999999999887654
No 242
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.00 E-value=4.3e-09 Score=100.32 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=40.6
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
..++.+++++||. |||||++..||.++...|++|.+|+.||+..
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4567889999999 9999999999999988999999999999975
No 243
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.00 E-value=4.8e-09 Score=105.14 Aligned_cols=118 Identities=12% Similarity=0.151 Sum_probs=80.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
++++-++|.||....-.+ +..+++.+.+-..+..|+++.++|+.+..+. -+ -..++..++.|+|+++|++|.
T Consensus 49 ~~~i~ivDLPG~YSL~~~-S~DE~Var~~ll~~~~D~ivnVvDAtnLeRn-Ly------ltlQLlE~g~p~ilaLNm~D~ 120 (653)
T COG0370 49 GHEIEIVDLPGTYSLTAY-SEDEKVARDFLLEGKPDLIVNVVDATNLERN-LY------LTLQLLELGIPMILALNMIDE 120 (653)
T ss_pred CceEEEEeCCCcCCCCCC-CchHHHHHHHHhcCCCCEEEEEcccchHHHH-HH------HHHHHHHcCCCeEEEeccHhh
Confidence 567999999998775544 3356665554222446899999999755332 11 123456899999999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
.+++ .+. + |.+. +++.--..++|.||++|.|+++++.+|.+..+..
T Consensus 121 A~~~-Gi~--I--D~~~-----------------------L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 121 AKKR-GIR--I--DIEK-----------------------LSKLLGVPVVPTVAKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred HHhc-CCc--c--cHHH-----------------------HHHHhCCCEEEEEeecCCCHHHHHHHHHHhcccc
Confidence 7543 221 1 1111 1222238999999999999999999998765443
No 244
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=98.99 E-value=4.3e-08 Score=89.50 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=81.8
Q ss_pred EEEECCC-CcHHHHHHHHHHHH-HhcCCceEEEecCcCCCCCC----CCc-cccccc----cccHHHHhhhc-----Ccc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHC-ETVRRTMHIVNLDPAAENFD----YPV-AMDIRE----LISLEDVMEEL-----GLG 85 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l-~~~g~~v~iVdLDPq~~~~~----~~~-~~dir~----~i~~~~vm~~~-----~lg 85 (284)
-++-|.| +||||.+.||+..+ +..|++|++||+|++...+. ..+ ...+.+ .-+++|++.+. .+.
T Consensus 6 av~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~gl~vi 85 (262)
T COG0455 6 AVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDGLYVL 85 (262)
T ss_pred EEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcCCEEEe
Confidence 3455999 99999999995555 55777789999999998542 211 111332 22344544332 233
Q ss_pred cCchhhhhhHhhh-hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHH
Q 023298 86 PNGGLIYCMEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT 164 (284)
Q Consensus 86 Png~l~~~~e~~~-~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~ 164 (284)
|.+.-...+-.+. +.. ..+.++++. .++|+++|||+.++.- .+..+...+ .++.+... ++.
T Consensus 86 pg~~~~~~~~~~~~~~~-~~~~~~l~~--~~D~iliD~~aGl~~~--------~~~~~~~sd---~~viVt~p----e~~ 147 (262)
T COG0455 86 PGGSGLEDLAKLDPEDL-EDVIKELEE--LYDYILIDTGAGLSRD--------TLSFILSSD---ELVIVTTP----EPT 147 (262)
T ss_pred eCCCChHHHhhcCHHHH-HHHHHHHHh--cCCEEEEeCCCCccHH--------HHHHHHhcC---cEEEEeCC----Ccc
Confidence 4443333222121 122 223345554 4599999999977511 223332323 23333322 122
Q ss_pred HHHHHHHHHHHHHHhcCCCE---EEEecCCcc
Q 023298 165 KFISGCMASLSAMVQLELPH---VNILSKMDL 193 (284)
Q Consensus 165 ~~i~~~l~~l~~~~~~~~p~---IlVlNK~Dl 193 (284)
. +......+.+..+.+.+. .+|+|+++.
T Consensus 148 s-i~~A~~~i~~~~~~~~~~~~~~vV~N~v~~ 178 (262)
T COG0455 148 S-ITDAYKTIKILSKLGLDLLGRRVVLNRVRS 178 (262)
T ss_pred h-HHHHHHHHHHHHHcCCccccceEEEEeccc
Confidence 2 223334445555655553 389999974
No 245
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.99 E-value=4.3e-09 Score=88.63 Aligned_cols=114 Identities=13% Similarity=0.225 Sum_probs=65.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~Dl 193 (284)
..+.++||||+.+.. ..+...... ..+++++++|+....+... +..++..+.... ..+.|.++|.||+|+
T Consensus 51 ~~~~i~Dt~G~~~~~------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 121 (170)
T cd04115 51 IKVQLWDTAGQERFR------KSMVQHYYR--NVHAVVFVYDVTNMASFHS-LPSWIEECEQHSLPNEVPRILVGNKCDL 121 (170)
T ss_pred EEEEEEeCCChHHHH------HhhHHHhhc--CCCEEEEEEECCCHHHHHh-HHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 467899999975311 112232211 2367899999864322222 333333222221 246899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccC---cccHHHHHHHHHHhc
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK---ESSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~---~~~l~~Ll~~I~~~l 264 (284)
.... ++..-. . .++.+.++ ..++++||++ ++++++++..+.+.+
T Consensus 122 ~~~~-~~~~~~----------------------~---~~~~~~~~-~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 122 REQI-QVPTDL----------------------A---QRFADAHS-MPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred hhhc-CCCHHH----------------------H---HHHHHHcC-CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 6432 111000 0 01112232 6789999999 889999988876544
No 246
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.99 E-value=3e-09 Score=90.70 Aligned_cols=121 Identities=10% Similarity=0.126 Sum_probs=68.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HH-HHHHHHHHHHhcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--IS-GCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~-~~l~~l~~~~~~~~p~IlVlNK 190 (284)
.++.+.||||+-.... +.. .+.. .+++++++|... +..| +. .++..+... ..+.|.|+|.||
T Consensus 49 ~~l~i~Dt~G~~~~~~-------~~~~~~~~---a~~~ilv~d~~~---~~s~~~~~~~w~~~i~~~-~~~~piilvgnK 114 (175)
T cd01874 49 YTLGLFDTAGQEDYDR-------LRPLSYPQ---TDVFLVCFSVVS---PSSFENVKEKWVPEITHH-CPKTPFLLVGTQ 114 (175)
T ss_pred EEEEEEECCCccchhh-------hhhhhccc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHHh-CCCCCEEEEEEC
Confidence 4678999999854211 111 1222 467889999863 3333 22 233222221 236899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+|+...+ ++.+.+... -+..-. .....++..+++...++++||++|.|++++++.+.+.
T Consensus 115 ~Dl~~~~-~~~~~l~~~-------~~~~v~------~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 115 IDLRDDP-STIEKLAKN-------KQKPIT------PETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HhhhhCh-hhHHHhhhc-------cCCCcC------HHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHH
Confidence 9986543 222111100 000000 0011222344566789999999999999999988764
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.99 E-value=2.9e-09 Score=84.43 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=40.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+.++.++||||..+........+.+.+.++.....++++|++|+.... .+....++.. + +.++|.++|+||
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~--~~~~~~~~~~---l-~~~~~~i~v~NK 116 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPI--TEDDKNILRE---L-KNKKPIILVLNK 116 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHS--HHHHHHHHHH---H-HTTSEEEEEEES
T ss_pred eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCC--CHHHHHHHHH---H-hcCCCEEEEEcC
Confidence 447799999998764322221121222233224457899999976521 1222222222 2 478999999998
No 248
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.99 E-value=2.6e-08 Score=88.81 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=66.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEE-EEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHV-NILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~I-lVlNK~ 191 (284)
..++.++||||.. ..+++.++. .+++++++|+...... +..+.. .+...+.|.+ .|+||+
T Consensus 82 ~~~i~~vDtPg~~---------~~~l~~ak~---aDvVllviDa~~~~~~~~~~i~~------~l~~~g~p~vi~VvnK~ 143 (225)
T cd01882 82 KRRLTFIECPNDI---------NAMIDIAKV---ADLVLLLIDASFGFEMETFEFLN------ILQVHGFPRVMGVLTHL 143 (225)
T ss_pred CceEEEEeCCchH---------HHHHHHHHh---cCEEEEEEecCcCCCHHHHHHHH------HHHHcCCCeEEEEEecc
Confidence 4578999999843 234444443 4689999999754332 222322 2334678865 499999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHH-HH-hccCCceEEEEeccCc-----ccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIE-LV-DEYSMVSFMPLDLRKE-----SSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~-~l-~~~~~~~~ipiSa~~~-----~~l~~Ll~~I~~~l 264 (284)
|++.+...+.+.. . .|.+ +. +.+.+.+++++||++. ....+++..|+..-
T Consensus 144 D~~~~~~~~~~~~--------~---------------~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~ 200 (225)
T cd01882 144 DLFKKNKTLRKTK--------K---------------RLKHRFWTEVYQGAKLFYLSGIVHGRYPKTEIHNLARFISVMK 200 (225)
T ss_pred ccCCcHHHHHHHH--------H---------------HHHHHHHHhhCCCCcEEEEeeccCCCCCHHHHHHHHHHHHhCC
Confidence 9975331222221 1 1111 11 1235689999998876 33466677777665
Q ss_pred CCCC
Q 023298 265 QWGE 268 (284)
Q Consensus 265 ~~g~ 268 (284)
+.+-
T Consensus 201 ~~~~ 204 (225)
T cd01882 201 FRPL 204 (225)
T ss_pred CCCC
Confidence 5443
No 249
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.98 E-value=7e-09 Score=101.47 Aligned_cols=116 Identities=20% Similarity=0.329 Sum_probs=66.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC--C-----CHHHHHHHHHHHHHHHHhcCCCE-E
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--T-----DVTKFISGCMASLSAMVQLELPH-V 185 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~--~-----~~~~~i~~~l~~l~~~~~~~~p~-I 185 (284)
++.+.+|||||+.. ....+...+.. .+.+++++|+... . .+.. . ..+......+.|. |
T Consensus 84 ~~~i~liDtPGh~d------f~~~~~~g~~~---aD~aIlVVda~~G~~e~g~~~~~qT-~----eh~~~~~~~gi~~iI 149 (447)
T PLN00043 84 KYYCTVIDAPGHRD------FIKNMITGTSQ---ADCAVLIIDSTTGGFEAGISKDGQT-R----EHALLAFTLGVKQMI 149 (447)
T ss_pred CEEEEEEECCCHHH------HHHHHHhhhhh---ccEEEEEEEcccCceecccCCCchH-H----HHHHHHHHcCCCcEE
Confidence 55789999999644 22333333432 4678889999742 1 0111 0 1111223567865 7
Q ss_pred EEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcccHH-------
Q 023298 186 NILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR------- 254 (284)
Q Consensus 186 lVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~l~------- 254 (284)
+++||+|+.... +.+ ..+.+....+.+++...++ ..|+|+||.+|+|+.
T Consensus 150 V~vNKmD~~~~~-----~~~---------------~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~~~~~~~ 209 (447)
T PLN00043 150 CCCNKMDATTPK-----YSK---------------ARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLD 209 (447)
T ss_pred EEEEcccCCchh-----hhH---------------HHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccccccCCc
Confidence 789999975211 100 0111222334455565554 569999999999985
Q ss_pred -----HHHHHHHHh
Q 023298 255 -----YVLSQIDNC 263 (284)
Q Consensus 255 -----~Ll~~I~~~ 263 (284)
.|++.++..
T Consensus 210 Wy~g~tLl~~l~~i 223 (447)
T PLN00043 210 WYKGPTLLEALDQI 223 (447)
T ss_pred ccchHHHHHHHhhc
Confidence 377777764
No 250
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.98 E-value=1.3e-08 Score=102.88 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
++.+.++||||+... ...+.+.+.. .+.+++++|+...-+.... ..+ ......++|.|+|+||+|+
T Consensus 73 ~~~lnLiDTPGh~dF------~~~v~~sl~~---aD~aILVVDas~gv~~qt~-~~~----~~~~~~~lpiIvViNKiDl 138 (600)
T PRK05433 73 TYILNLIDTPGHVDF------SYEVSRSLAA---CEGALLVVDASQGVEAQTL-ANV----YLALENDLEIIPVLNKIDL 138 (600)
T ss_pred cEEEEEEECCCcHHH------HHHHHHHHHH---CCEEEEEEECCCCCCHHHH-HHH----HHHHHCCCCEEEEEECCCC
Confidence 457899999998762 1223344544 3578999999754333322 111 1123468899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
.... ..... +++ .+.+ ......++++||++|.|+++|++.|.+.+|.
T Consensus 139 ~~a~--~~~v~--------~ei---------------~~~l-g~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 139 PAAD--PERVK--------QEI---------------EDVI-GIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred Cccc--HHHHH--------HHH---------------HHHh-CCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 5321 11111 001 1111 1112358999999999999999999998875
No 251
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.98 E-value=7.8e-09 Score=88.87 Aligned_cols=117 Identities=14% Similarity=0.180 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++-+.||+|+-... .+.... ....+++++++|.....+... +..++..+........| |+|.||+|+.
T Consensus 49 ~~l~iwDt~G~~~~~-------~~~~~~--~~~a~~iilv~D~t~~~s~~~-i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 49 ITFSIWDLGGQREFI-------NMLPLV--CNDAVAILFMFDLTRKSTLNS-IKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred EEEEEEeCCCchhHH-------HhhHHH--CcCCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 367899999975421 122221 122468999999864322211 23343322222223455 7899999986
Q ss_pred cchh--hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 195 TNKK--EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 195 ~~~~--~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
.... +..... ....++.+.++ ..++++||++|.|++++++.+.+.+.+
T Consensus 118 ~~~~~~~~~~~~-----------------------~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 118 ADLPPEEQEEIT-----------------------KQARKYAKAMK-APLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred ccccchhhhhhH-----------------------HHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 3110 000000 01112223344 579999999999999999999887754
No 252
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.97 E-value=2.7e-08 Score=102.25 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=44.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+.... ....+.+.. .+++++++|+...-.+ ...+.. ...+.++|+++|+||+|
T Consensus 74 ~~~i~liDTPG~~~~~------~~~~~~l~~---~D~~ilVvda~~g~~~~~~~~~~------~~~~~~~p~ivviNK~D 138 (689)
T TIGR00484 74 GHRINIIDTPGHVDFT------VEVERSLRV---LDGAVAVLDAVGGVQPQSETVWR------QANRYEVPRIAFVNKMD 138 (689)
T ss_pred CeEEEEEECCCCcchh------HHHHHHHHH---hCEEEEEEeCCCCCChhHHHHHH------HHHHcCCCEEEEEECCC
Confidence 5689999999987521 123344544 3689999999754222 222322 23456899999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
+..
T Consensus 139 ~~~ 141 (689)
T TIGR00484 139 KTG 141 (689)
T ss_pred CCC
Confidence 874
No 253
>PRK10218 GTP-binding protein; Provisional
Probab=98.97 E-value=3.5e-08 Score=99.77 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+... ...+...+.. .+.+++++|+... .....+++. .....++|.++|+||+|
T Consensus 67 ~~~inliDTPG~~df------~~~v~~~l~~---aDg~ILVVDa~~G~~~qt~~~l~------~a~~~gip~IVviNKiD 131 (607)
T PRK10218 67 DYRINIVDTPGHADF------GGEVERVMSM---VDSVLLVVDAFDGPMPQTRFVTK------KAFAYGLKPIVVINKVD 131 (607)
T ss_pred CEEEEEEECCCcchh------HHHHHHHHHh---CCEEEEEEecccCccHHHHHHHH------HHHHcCCCEEEEEECcC
Confidence 557899999997652 1122333433 3678999999643 222333322 23457899999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcc----------cHHHHHHHHHH
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES----------SIRYVLSQIDN 262 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~----------~l~~Ll~~I~~ 262 (284)
+.... ....+ +++.+ +...+ ...++..-..++++||.+|. ++..|++.|.+
T Consensus 132 ~~~a~--~~~vl--------~ei~~--------l~~~l-~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~ 192 (607)
T PRK10218 132 RPGAR--PDWVV--------DQVFD--------LFVNL-DATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVD 192 (607)
T ss_pred CCCCc--hhHHH--------HHHHH--------HHhcc-CccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHH
Confidence 85322 11111 11110 00000 00111112569999999998 68999999999
Q ss_pred hcCCC
Q 023298 263 CIQWG 267 (284)
Q Consensus 263 ~l~~g 267 (284)
.+|.-
T Consensus 193 ~iP~P 197 (607)
T PRK10218 193 HVPAP 197 (607)
T ss_pred hCCCC
Confidence 98754
No 254
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.97 E-value=6.4e-09 Score=105.03 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
+++.|+||||+... ...+.+.+.. .+.+++++|+....+.... ..+. ...+.++|.|+|+||+|+.
T Consensus 70 ~~l~liDTPG~~dF------~~~v~~~l~~---aD~aILVvDat~g~~~qt~-~~~~----~~~~~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 70 YVLNLIDTPGHVDF------SYEVSRSLAA---CEGALLLVDAAQGIEAQTL-ANVY----LALENDLEIIPVINKIDLP 135 (595)
T ss_pred EEEEEEECCCcHHH------HHHHHHHHHh---CCEEEEEecCCCCCCHhHH-HHHH----HHHHcCCCEEEEEECcCCC
Confidence 57899999998652 1223344544 3578999999754333322 1111 1224578999999999985
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
... ..... ++ +.+.+ ...+..++++||++|.|+++|++.|.+.+|.
T Consensus 136 ~~~--~~~~~--------~e---------------l~~~l-g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 136 SAD--PERVK--------KE---------------IEEVI-GLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ccC--HHHHH--------HH---------------HHHHh-CCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 321 11111 01 11111 1122468999999999999999999998875
No 255
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.97 E-value=1.1e-08 Score=101.17 Aligned_cols=151 Identities=14% Similarity=0.159 Sum_probs=82.5
Q ss_pred ccccCceEEEEECCC-CcHHHHHHHHHHHHHhc--CCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchh
Q 023298 14 SWLYALVIKCVFSPP-PNQSTYCSSLYRHCETV--RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGL 90 (284)
Q Consensus 14 ~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~--g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l 90 (284)
.|+.+..++.++||. +||||++.+|+.++... +++|.+|+.|++.....+ ....++-..+ ..
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~E--------------QLk~ya~iLg-v~ 409 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGRE--------------QLHSYGRQLG-IA 409 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHH--------------HHHHhhcccC-ce
Confidence 577777889999999 99999999999998765 579999999997642100 0011100000 00
Q ss_pred hhhhHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHH
Q 023298 91 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 170 (284)
Q Consensus 91 ~~~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~ 170 (284)
+... ..- .-+.+.++++.++++|||||||.... .......+ ..+.... ....++++++... ..++ ...
T Consensus 410 v~~a----~d~-~~L~~aL~~l~~~DLVLIDTaG~s~~--D~~l~eeL-~~L~aa~-~~a~lLVLpAtss--~~Dl-~ei 477 (559)
T PRK12727 410 VHEA----DSA-ESLLDLLERLRDYKLVLIDTAGMGQR--DRALAAQL-NWLRAAR-QVTSLLVLPANAH--FSDL-DEV 477 (559)
T ss_pred eEec----CcH-HHHHHHHHHhccCCEEEecCCCcchh--hHHHHHHH-HHHHHhh-cCCcEEEEECCCC--hhHH-HHH
Confidence 0000 000 11223343333679999999997641 11112222 2232211 1235567777532 2221 111
Q ss_pred HHHHHHHHhcCCCEEEEecCCcccc
Q 023298 171 MASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 171 l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
+ ..+... .+.-+|+||+|...
T Consensus 478 i---~~f~~~-~~~gvILTKlDEt~ 498 (559)
T PRK12727 478 V---RRFAHA-KPQGVVLTKLDETG 498 (559)
T ss_pred H---HHHHhh-CCeEEEEecCcCcc
Confidence 1 122222 57889999999754
No 256
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.96 E-value=2.4e-08 Score=87.84 Aligned_cols=135 Identities=13% Similarity=0.193 Sum_probs=70.1
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
.++|+|.. +||||++.+|.......+++ .+++.....|. |-++ .+.-++..+..+. ..
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~-----~~~~~~~~~~~---d~~~----~e~~~giti~~~~-----~~---- 60 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPS-----GKDGWKPLRYT---DIRK----DEQERGISIKSSP-----IS---- 60 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCccc-----ccccCCceeEC---CCCH----HHHHcCccccccc-----ee----
Confidence 47899999 99999999998865443332 34444433221 1110 0000000110000 00
Q ss_pred cHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh
Q 023298 100 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ 179 (284)
Q Consensus 100 ~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~ 179 (284)
+ .| ...+.. ...+.++||||+.+.. ......+.. .+++++++|+........ ..++ .....
T Consensus 61 -~-~~--~~~~~~-~~~i~iiDtpG~~~f~------~~~~~~~~~---aD~~llVvD~~~~~~~~~--~~~~---~~~~~ 121 (213)
T cd04167 61 -L-VL--PDSKGK-SYLFNIIDTPGHVNFM------DEVAAALRL---SDGVVLVVDVVEGVTSNT--ERLI---RHAIL 121 (213)
T ss_pred -E-EE--EcCCCC-EEEEEEEECCCCcchH------HHHHHHHHh---CCEEEEEEECCCCCCHHH--HHHH---HHHHH
Confidence 0 00 000111 3578999999986521 112233433 367899999875433221 1111 11223
Q ss_pred cCCCEEEEecCCcccc
Q 023298 180 LELPHVNILSKMDLVT 195 (284)
Q Consensus 180 ~~~p~IlVlNK~Dll~ 195 (284)
.++|.++|+||+|++.
T Consensus 122 ~~~p~iiviNK~D~~~ 137 (213)
T cd04167 122 EGLPIVLVINKIDRLI 137 (213)
T ss_pred cCCCEEEEEECcccCc
Confidence 5689999999999863
No 257
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.96 E-value=1.1e-08 Score=86.54 Aligned_cols=108 Identities=14% Similarity=0.142 Sum_probs=65.2
Q ss_pred CEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHH-HhcCCCEEEEecCC
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM-VQLELPHVNILSKM 191 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~-~~~~~p~IlVlNK~ 191 (284)
.+.+.||+|+.+... +.. .+.. .+++++++|+. ++..+ +..++. .+ ...+.|+++|.||+
T Consensus 55 ~l~~~d~~g~~~~~~-------~~~~~~~~---~d~~llv~d~~---~~~s~~~~~~~~~---~~~~~~~~p~iiv~NK~ 118 (169)
T cd01892 55 YLILREVGEDEVAIL-------LNDAELAA---CDVACLVYDSS---DPKSFSYCAEVYK---KYFMLGEIPCLFVAAKA 118 (169)
T ss_pred EEEEEecCCcccccc-------cchhhhhc---CCEEEEEEeCC---CHHHHHHHHHHHH---HhccCCCCeEEEEEEcc
Confidence 567789999765211 111 1222 46899999985 33333 222222 11 12368999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+.... ... .. .. .++.+.++...++++||++|.|++++++.+.+.+.
T Consensus 119 Dl~~~~-~~~--~~-~~----------------------~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 119 DLDEQQ-QRY--EV-QP----------------------DEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred cccccc-ccc--cc-CH----------------------HHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 986432 110 00 00 11113345556789999999999999999988754
No 258
>PLN03108 Rab family protein; Provisional
Probab=98.95 E-value=1.5e-08 Score=88.95 Aligned_cols=111 Identities=12% Similarity=0.157 Sum_probs=63.0
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.+-++||||+.... .+.+. +.. .+++++++|+....+-. .+..++..+........|+++|.||+|+.
T Consensus 56 ~l~l~Dt~G~~~~~-------~~~~~~~~~---ad~~vlv~D~~~~~s~~-~l~~~~~~~~~~~~~~~piiiv~nK~Dl~ 124 (210)
T PLN03108 56 KLQIWDTAGQESFR-------SITRSYYRG---AAGALLVYDITRRETFN-HLASWLEDARQHANANMTIMLIGNKCDLA 124 (210)
T ss_pred EEEEEeCCCcHHHH-------HHHHHHhcc---CCEEEEEEECCcHHHHH-HHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence 46789999975311 12121 222 35788899986432111 12233332222223468999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.++ .+..-. ..++...++ ..++++||+++.|+++++..+.+.+
T Consensus 125 ~~~-~~~~~~-------------------------~~~~~~~~~-~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 125 HRR-AVSTEE-------------------------GEQFAKEHG-LIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred ccc-CCCHHH-------------------------HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 432 111000 011123343 4799999999999999886665444
No 259
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.95 E-value=3.4e-08 Score=86.14 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=75.4
Q ss_pred CCCEEEEeCCCCc--cc--ccccchHHHHHHHHHh-cCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEE
Q 023298 114 DDDYLVFDCPGQI--EL--FTHVPVLRNFVDHLKS-RNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNI 187 (284)
Q Consensus 114 ~~~~viiDtPg~~--e~--~~~~~~~~~l~~~l~~-~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlV 187 (284)
...+.++|-||.= .. -........+.+.|+. .+ -..++.|+|+...... +..+.. .+...+.|+++|
T Consensus 69 ~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~-L~~vvlliD~r~~~~~~D~em~~------~l~~~~i~~~vv 141 (200)
T COG0218 69 DDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRAN-LKGVVLLIDARHPPKDLDREMIE------FLLELGIPVIVV 141 (200)
T ss_pred cCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchh-heEEEEEEECCCCCcHHHHHHHH------HHHHcCCCeEEE
Confidence 3357899999941 10 0111223334555653 34 3468889999876444 443433 345789999999
Q ss_pred ecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCc--eEEEEeccCcccHHHHHHHHHHhcC
Q 023298 188 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV--SFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 188 lNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~--~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+||+|.+++. +..+.+. .+++.+...... .++..|+.++.|+++|.+.|.+.+.
T Consensus 142 ~tK~DKi~~~-~~~k~l~-----------------------~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 142 LTKADKLKKS-ERNKQLN-----------------------KVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEccccCChh-HHHHHHH-----------------------HHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 9999999754 2222110 112222222222 2899999999999999999998775
Q ss_pred C
Q 023298 266 W 266 (284)
Q Consensus 266 ~ 266 (284)
+
T Consensus 198 ~ 198 (200)
T COG0218 198 E 198 (200)
T ss_pred c
Confidence 4
No 260
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.95 E-value=7.7e-09 Score=87.23 Aligned_cols=115 Identities=20% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHH-HHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l-~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK~ 191 (284)
+..+.++||||+.+. ..+ ...+.. +++++|++|++...+... +..++..+... ...++|+++|.||+
T Consensus 42 ~~~~~i~D~~G~~~~-------~~~~~~~~~~---a~~ii~V~D~s~~~s~~~-~~~~l~~l~~~~~~~~~piliv~NK~ 110 (167)
T cd04161 42 KYEVCIFDLGGGANF-------RGIWVNYYAE---AHGLVFVVDSSDDDRVQE-VKEILRELLQHPRVSGKPILVLANKQ 110 (167)
T ss_pred CEEEEEEECCCcHHH-------HHHHHHHHcC---CCEEEEEEECCchhHHHH-HHHHHHHHHcCccccCCcEEEEEeCC
Confidence 346789999997541 112 223333 468999999874432211 22232222111 11478999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC-ceEEEEeccCc------ccHHHHHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKE------SSIRYVLSQID 261 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~-~~~ipiSa~~~------~~l~~Ll~~I~ 261 (284)
|+.... ...+..+ .+. +.++.++.+. ..+++.||++| +|+.+-++-+.
T Consensus 111 Dl~~~~-~~~~i~~--------~~~-------------l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 111 DKKNAL-LGADVIE--------YLS-------------LEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred CCcCCC-CHHHHHH--------hcC-------------cccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence 985432 1222111 000 0111122333 57999999998 88988777654
No 261
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.95 E-value=3.2e-08 Score=89.55 Aligned_cols=112 Identities=11% Similarity=0.147 Sum_probs=65.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHH---------HhcCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM---------VQLEL 182 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~---------~~~~~ 182 (284)
+++-|.||||+.... .+.+. +.. .+++++++|... +..| +..++..+... ...++
T Consensus 48 ~~l~I~Dt~G~~~~~-------~~~~~~~~~---ad~iIlVfdv~~---~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~ 114 (247)
T cd04143 48 YQLDILDTSGNHPFP-------AMRRLSILT---GDVFILVFSLDN---RESFEEVCRLREQILETKSCLKNKTKENVKI 114 (247)
T ss_pred EEEEEEECCCChhhh-------HHHHHHhcc---CCEEEEEEeCCC---HHHHHHHHHHHHHHHHhhcccccccccCCCC
Confidence 466799999975311 11111 212 367888888763 3333 22332222111 11368
Q ss_pred CEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 183 PHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 183 p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
|+|+|.||+|+.... ++.. + .+.+.+.......++++||++|.|++++++.|.+
T Consensus 115 piIivgNK~Dl~~~~-~v~~------~-------------------ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~ 168 (247)
T cd04143 115 PMVICGNKADRDFPR-EVQR------D-------------------EVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFS 168 (247)
T ss_pred cEEEEEECccchhcc-ccCH------H-------------------HHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 999999999986422 1100 0 0111122222357999999999999999999988
Q ss_pred hcC
Q 023298 263 CIQ 265 (284)
Q Consensus 263 ~l~ 265 (284)
...
T Consensus 169 ~~~ 171 (247)
T cd04143 169 LAK 171 (247)
T ss_pred Hhc
Confidence 653
No 262
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.95 E-value=1.2e-08 Score=97.95 Aligned_cols=152 Identities=15% Similarity=0.163 Sum_probs=85.0
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHh----cCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhh
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCET----VRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLI 91 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~----~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~ 91 (284)
.+|..++++||. |||||++..||.++.. .|++|.+|+.|++.....+ .+-++.+ ..++ | +
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e-------QL~~~a~---~lgv-p----v 236 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK-------QIQTYGD---IMGI-P----V 236 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH-------HHHHHhh---cCCc-c----e
Confidence 467889999999 9999999999999874 5789999999997543211 1111111 1122 2 0
Q ss_pred hhhHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHH
Q 023298 92 YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 171 (284)
Q Consensus 92 ~~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l 171 (284)
.+.. .. +-+.+.+.+..++++|+|||||.... ......++.+.+.......-+++++|+..- +.. +...+
T Consensus 237 ~~~~----~~-~~l~~~L~~~~~~DlVLIDTaGr~~~--~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~-~~~~~ 306 (388)
T PRK12723 237 KAIE----SF-KDLKEEITQSKDFDLVLVDTIGKSPK--DFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSD-VKEIF 306 (388)
T ss_pred EeeC----cH-HHHHHHHHHhCCCCEEEEcCCCCCcc--CHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHH-HHHHH
Confidence 1000 11 11223333333789999999997641 111123344444433222246778888533 222 22221
Q ss_pred HHHHHHHhcCCCEEEEecCCccccch
Q 023298 172 ASLSAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 172 ~~l~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
. ..... -+.=++++|.|-..+-
T Consensus 307 ~---~~~~~-~~~~~I~TKlDet~~~ 328 (388)
T PRK12723 307 H---QFSPF-SYKTVIFTKLDETTCV 328 (388)
T ss_pred H---HhcCC-CCCEEEEEeccCCCcc
Confidence 1 12122 2567899999976543
No 263
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.93 E-value=1.7e-08 Score=101.92 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++++.++||||+.. ....+.+.+.. .+.+++++|+...-.+ ..++ +......++|.|+|+||+|
T Consensus 63 ~~kinlIDTPGh~D------F~~ev~~~l~~---aD~alLVVDa~~G~~~qT~~~------l~~a~~~~ip~IVviNKiD 127 (594)
T TIGR01394 63 GTKINIVDTPGHAD------FGGEVERVLGM---VDGVLLLVDASEGPMPQTRFV------LKKALELGLKPIVVINKID 127 (594)
T ss_pred CEEEEEEECCCHHH------HHHHHHHHHHh---CCEEEEEEeCCCCCcHHHHHH------HHHHHHCCCCEEEEEECCC
Confidence 56889999999654 12223344443 3678999999753222 2222 2233467899999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcc----------cHHHHHHHHHH
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES----------SIRYVLSQIDN 262 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~----------~l~~Ll~~I~~ 262 (284)
+.... ..+..+ ....++..+. .-++.-...++++||++|. |+..|++.|.+
T Consensus 128 ~~~a~--~~~v~~-ei~~l~~~~g----------------~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~ 188 (594)
T TIGR01394 128 RPSAR--PDEVVD-EVFDLFAELG----------------ADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVR 188 (594)
T ss_pred CCCcC--HHHHHH-HHHHHHHhhc----------------cccccccCcEEechhhcCcccccCcccccCHHHHHHHHHH
Confidence 85422 111111 0000000000 0011112468999999995 89999999999
Q ss_pred hcCCC
Q 023298 263 CIQWG 267 (284)
Q Consensus 263 ~l~~g 267 (284)
.+|.-
T Consensus 189 ~lP~P 193 (594)
T TIGR01394 189 HVPAP 193 (594)
T ss_pred hCCCC
Confidence 98754
No 264
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.93 E-value=2e-08 Score=101.17 Aligned_cols=110 Identities=13% Similarity=0.196 Sum_probs=65.0
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
++.|+||||+.... .+.. ......+++++++|+.....+...- .+......+.|+|+++||+|+..
T Consensus 136 ~i~~iDTPGhe~F~-------~~r~--rga~~aDiaILVVda~dgv~~qT~e-----~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 136 MITFLDTPGHEAFT-------SMRA--RGAKVTDIVVLVVAADDGVMPQTIE-----AISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEEECCCCcchh-------hHHH--hhhccCCEEEEEEECCCCCCHhHHH-----HHHHHHHcCCCEEEEEECccccc
Confidence 78999999975421 1111 1123356788899987543333321 12223456899999999999853
Q ss_pred ch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHHHHHHHHHH
Q 023298 196 NK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 196 ~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
.. ..+... +.. ++ -..+.++ ...++|+||++|+|+++|++.|..
T Consensus 202 ~~~e~v~~~-----------L~~-----~g-------~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 202 ANPDRVKQE-----------LSE-----YG-------LVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCHHHHHHH-----------HHH-----hh-------hhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 21 011111 110 00 0012233 357999999999999999998864
No 265
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.91 E-value=2.6e-08 Score=88.71 Aligned_cols=70 Identities=10% Similarity=0.180 Sum_probs=41.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+... +. +... +.. .+++++++|.....+-.. +..++..+......+.|+|+|.||+|+
T Consensus 44 ~~l~iwDt~G~e~~---~~----l~~~~~~~---ad~~IlV~Dvt~~~Sf~~-l~~~~~~l~~~~~~~~piIlVgNK~DL 112 (220)
T cd04126 44 YNISIWDTAGREQF---HG----LGSMYCRG---AAAVILTYDVSNVQSLEE-LEDRFLGLTDTANEDCLFAVVGNKLDL 112 (220)
T ss_pred EEEEEEeCCCcccc---hh----hHHHHhcc---CCEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 46789999997541 11 2221 222 467899999864322222 333333222222346899999999998
Q ss_pred cc
Q 023298 194 VT 195 (284)
Q Consensus 194 l~ 195 (284)
..
T Consensus 113 ~~ 114 (220)
T cd04126 113 TE 114 (220)
T ss_pred cc
Confidence 64
No 266
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.91 E-value=6.4e-08 Score=89.00 Aligned_cols=195 Identities=14% Similarity=0.175 Sum_probs=108.2
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCc----ccCchhhhh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGL----GPNGGLIYC 93 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~l----gPng~l~~~ 93 (284)
+-.+=|.|+| +||||+.-.|...|...|+||.++-.||....+.-. =+-|-+..++.-...+. .|+.+-.-.
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGs---iLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGS---ILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcc---ccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 3347799999 999999999999999999999999999988644321 11122222211111000 133222222
Q ss_pred hHhhhhcHHHHHHHHhhccCCCCEEEEeCCC--CcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHH
Q 023298 94 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPG--QIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 171 (284)
Q Consensus 94 ~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg--~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l 171 (284)
+.. ..-+ ....++.. .+++|||-|=| |.|.- +.. ..++++++.-+. ..+...-+..-+
T Consensus 128 lS~---at~~-~i~~ldAa-G~DvIIVETVGvGQsev~------------I~~--~aDt~~~v~~pg-~GD~~Q~iK~Gi 187 (323)
T COG1703 128 LSR---ATRE-AIKLLDAA-GYDVIIVETVGVGQSEVD------------IAN--MADTFLVVMIPG-AGDDLQGIKAGI 187 (323)
T ss_pred hhH---HHHH-HHHHHHhc-CCCEEEEEecCCCcchhH------------Hhh--hcceEEEEecCC-CCcHHHHHHhhh
Confidence 111 1101 11234444 88999999988 44311 111 123444443221 233333332221
Q ss_pred HHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHH---HhccCC-ceEEEEec
Q 023298 172 ASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIEL---VDEYSM-VSFMPLDL 247 (284)
Q Consensus 172 ~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~---l~~~~~-~~~ipiSa 247 (284)
++.-=|+|+||.|.-..+ ..+ +.|..++-.. -.+.+. -.++..||
T Consensus 188 --------mEiaDi~vINKaD~~~A~---~a~--------------------r~l~~al~~~~~~~~~~~W~ppv~~t~A 236 (323)
T COG1703 188 --------MEIADIIVINKADRKGAE---KAA--------------------RELRSALDLLREVWRENGWRPPVVTTSA 236 (323)
T ss_pred --------hhhhheeeEeccChhhHH---HHH--------------------HHHHHHHHhhcccccccCCCCceeEeee
Confidence 245669999999953222 111 1111111111 122334 47999999
Q ss_pred cCcccHHHHHHHHHHhcCCC
Q 023298 248 RKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 248 ~~~~~l~~Ll~~I~~~l~~g 267 (284)
.+|+|+++|+.+|.+...+-
T Consensus 237 ~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 237 LEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred ccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887663
No 267
>PRK00007 elongation factor G; Reviewed
Probab=98.90 E-value=3.9e-08 Score=101.07 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=45.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC-HHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~-~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++++.+|||||+.. ....+...+.. .+++++++|+...-. .+..+.. ...+.++|.|+++||+|
T Consensus 74 ~~~~~liDTPG~~~------f~~ev~~al~~---~D~~vlVvda~~g~~~qt~~~~~------~~~~~~~p~iv~vNK~D 138 (693)
T PRK00007 74 DHRINIIDTPGHVD------FTIEVERSLRV---LDGAVAVFDAVGGVEPQSETVWR------QADKYKVPRIAFVNKMD 138 (693)
T ss_pred CeEEEEEeCCCcHH------HHHHHHHHHHH---cCEEEEEEECCCCcchhhHHHHH------HHHHcCCCEEEEEECCC
Confidence 56899999999754 12234455544 368999999875533 3333332 23467899999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
+..
T Consensus 139 ~~~ 141 (693)
T PRK00007 139 RTG 141 (693)
T ss_pred CCC
Confidence 874
No 268
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.90 E-value=1.6e-08 Score=98.85 Aligned_cols=73 Identities=18% Similarity=0.216 Sum_probs=43.4
Q ss_pred CCCEEEEeCCCCcccccccchHHH--HHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRN--FVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~--l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+..+.++||||+-+.. ...++ +.+........+++++++|+....+.... ++. .....++|.|+|+||+
T Consensus 250 g~~v~l~DTaG~~~~~---~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~---~l~---~~~~~~~piIlV~NK~ 320 (442)
T TIGR00450 250 GILIKLLDTAGIREHA---DFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF---LII---DLNKSKKPFILVLNKI 320 (442)
T ss_pred CEEEEEeeCCCcccch---hHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH---HHH---HHhhCCCCEEEEEECc
Confidence 3467899999986522 11111 11222222235789999999755443332 211 2233578999999999
Q ss_pred cccc
Q 023298 192 DLVT 195 (284)
Q Consensus 192 Dll~ 195 (284)
|+..
T Consensus 321 Dl~~ 324 (442)
T TIGR00450 321 DLKI 324 (442)
T ss_pred cCCC
Confidence 9853
No 269
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=98.89 E-value=3.5e-08 Score=92.86 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=41.0
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
.+.+++.|.|.| +||||++.|||.+|++.|+||++||+||+...+
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~ 74 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTT 74 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeeccccc
Confidence 466778899999 999999999999999999999999999998643
No 270
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.88 E-value=4e-08 Score=87.02 Aligned_cols=111 Identities=11% Similarity=0.158 Sum_probs=66.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..+-+.||||+-... .+.+. +.. .+++++++|.....+.. .+..++..+... ..+.|+++|.||+|+
T Consensus 62 ~~l~i~Dt~G~~~~~-------~~~~~~~~~---~~~~ilvfD~~~~~s~~-~i~~w~~~i~~~-~~~~piilvgNK~Dl 129 (219)
T PLN03071 62 IRFYCWDTAGQEKFG-------GLRDGYYIH---GQCAIIMFDVTARLTYK-NVPTWHRDLCRV-CENIPIVLCGNKVDV 129 (219)
T ss_pred EEEEEEECCCchhhh-------hhhHHHccc---ccEEEEEEeCCCHHHHH-HHHHHHHHHHHh-CCCCcEEEEEEchhh
Confidence 367899999975411 12222 222 35788889986432211 134444433332 246899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
.... ... +.+ +..... ...++.+||++|.|+.+++..|.+.+..
T Consensus 130 ~~~~--v~~------~~~--------------------~~~~~~-~~~~~e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 130 KNRQ--VKA------KQV--------------------TFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred hhcc--CCH------HHH--------------------HHHHhc-CCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 4321 100 000 111122 3578999999999999999988877643
No 271
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=98.88 E-value=3.3e-08 Score=76.85 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=32.9
Q ss_pred EEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 22 KCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 22 ~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+.|.|+ | +||||+|.+|+.+++++|++|+++|+|||
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 456665 6 99999999999999999999999999999
No 272
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.88 E-value=3.8e-08 Score=85.47 Aligned_cols=112 Identities=9% Similarity=0.156 Sum_probs=67.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+-+.||||+-. + ..+.+..-. ..+++++++|.....+-.. +..++..+... ..+.|.|+|-||+|+.
T Consensus 55 ~~l~iwDt~G~~~-~------~~l~~~~~~--~ad~illVfD~t~~~Sf~~-~~~w~~~i~~~-~~~~piilVGNK~DL~ 123 (189)
T cd04121 55 VKLQLWDTSGQGR-F------CTIFRSYSR--GAQGIILVYDITNRWSFDG-IDRWIKEIDEH-APGVPKILVGNRLHLA 123 (189)
T ss_pred EEEEEEeCCCcHH-H------HHHHHHHhc--CCCEEEEEEECcCHHHHHH-HHHHHHHHHHh-CCCCCEEEEEECccch
Confidence 4678899999743 1 123222211 2468899999864322222 34444433222 2478999999999985
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
... .+. . ++ ..++....+ ..++.+||++|.|+++++..+.+.+
T Consensus 124 ~~~-~v~---~-------~~---------------~~~~a~~~~-~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 124 FKR-QVA---T-------EQ---------------AQAYAERNG-MTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred hcc-CCC---H-------HH---------------HHHHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHH
Confidence 422 110 0 00 011113344 5799999999999999999888654
No 273
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.88 E-value=2.4e-08 Score=82.71 Aligned_cols=111 Identities=14% Similarity=0.290 Sum_probs=69.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
...+-+.||||+.... .+.+. +.. .+.++++.|.. ++..| +..++..+......+.|.++|-||
T Consensus 47 ~~~l~i~D~~g~~~~~-------~~~~~~~~~---~~~~ii~fd~~---~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K 113 (162)
T PF00071_consen 47 PVNLEIWDTSGQERFD-------SLRDIFYRN---SDAIIIVFDVT---DEESFENLKKWLEEIQKYKPEDIPIIVVGNK 113 (162)
T ss_dssp EEEEEEEEETTSGGGH-------HHHHHHHTT---ESEEEEEEETT---BHHHHHTHHHHHHHHHHHSTTTSEEEEEEET
T ss_pred cccccccccccccccc-------ccccccccc---ccccccccccc---ccccccccccccccccccccccccceeeecc
Confidence 3467899999975421 12222 223 35677778865 44444 445555444444445899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.|+...+ .+..- ...++..+++ ..++.+||+++.|+.+++..+.+.+
T Consensus 114 ~D~~~~~-~v~~~-------------------------~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 114 SDLSDER-EVSVE-------------------------EAQEFAKELG-VPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTGGGGS-SSCHH-------------------------HHHHHHHHTT-SEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccc-cchhh-------------------------HHHHHHHHhC-CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9986422 12100 0122335566 8999999999999999998887654
No 274
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.88 E-value=1.9e-08 Score=85.31 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=65.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHH-HhcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM-VQLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~-~~~~~p~IlVlNK 190 (284)
.++.+.||||+.... .+... +.. .+++++++|+.. +..+ +..++..+... .....|.++|.||
T Consensus 49 ~~l~i~Dt~G~~~~~-------~~~~~~~~~---ad~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK 115 (170)
T cd04108 49 FSLQLWDTAGQERFK-------CIASTYYRG---AQAIIIVFDLTD---VASLEHTRQWLEDALKENDPSSVLLFLVGTK 115 (170)
T ss_pred EEEEEEeCCChHHHH-------hhHHHHhcC---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 467899999975421 12222 222 467899999853 2222 33443322111 1123568999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+|+.++. +.. ..+. + .......++ ..++.+||++|.|++++++.|.+...+
T Consensus 116 ~Dl~~~~-~~~-~~~~-------~---------------~~~~~~~~~-~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 116 KDLSSPA-QYA-LMEQ-------D---------------AIKLAAEMQ-AEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred hhcCccc-ccc-ccHH-------H---------------HHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9985432 211 0000 0 001112233 478999999999999999998877643
No 275
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.87 E-value=3e-08 Score=101.92 Aligned_cols=115 Identities=12% Similarity=0.226 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+..+.|+||||+-. | .....+.+.. .+++++++|+.....+..+ ..+..+...+.|+|+|+||+|+
T Consensus 294 ~~kItfiDTPGhe~-F-----~~mr~rg~~~---aDiaILVVDA~dGv~~QT~-----E~I~~~k~~~iPiIVViNKiDl 359 (742)
T CHL00189 294 NQKIVFLDTPGHEA-F-----SSMRSRGANV---TDIAILIIAADDGVKPQTI-----EAINYIQAANVPIIVAINKIDK 359 (742)
T ss_pred ceEEEEEECCcHHH-H-----HHHHHHHHHH---CCEEEEEEECcCCCChhhH-----HHHHHHHhcCceEEEEEECCCc
Confidence 45789999999633 1 1111222333 4688999998754334332 1122234568999999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-CCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.... ..... .++.. ++ .+.+.+ +...++|+||++|.|+++|++.|....
T Consensus 360 ~~~~--~e~v~--------~eL~~-----~~-------ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 360 ANAN--TERIK--------QQLAK-----YN-------LIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred cccC--HHHHH--------HHHHH-----hc-------cchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 6422 11111 11110 00 001222 246899999999999999999987763
No 276
>PRK12740 elongation factor G; Reviewed
Probab=98.85 E-value=6.1e-08 Score=99.19 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
++++.+|||||+.+. .......+.. .+++++++|+......... .. +......++|.++|+||+|+
T Consensus 59 ~~~i~liDtPG~~~~------~~~~~~~l~~---aD~vllvvd~~~~~~~~~~--~~---~~~~~~~~~p~iiv~NK~D~ 124 (668)
T PRK12740 59 GHKINLIDTPGHVDF------TGEVERALRV---LDGAVVVVCAVGGVEPQTE--TV---WRQAEKYGVPRIIFVNKMDR 124 (668)
T ss_pred CEEEEEEECCCcHHH------HHHHHHHHHH---hCeEEEEEeCCCCcCHHHH--HH---HHHHHHcCCCEEEEEECCCC
Confidence 568999999997541 1223334443 4678999998754322211 11 12233568999999999998
Q ss_pred cc
Q 023298 194 VT 195 (284)
Q Consensus 194 l~ 195 (284)
..
T Consensus 125 ~~ 126 (668)
T PRK12740 125 AG 126 (668)
T ss_pred CC
Confidence 64
No 277
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.85 E-value=4.9e-08 Score=90.17 Aligned_cols=174 Identities=13% Similarity=0.161 Sum_probs=98.6
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCc----ccCchhhh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGL----GPNGGLIY 92 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~l----gPng~l~~ 92 (284)
+-.++-|+|++ ||||||...+...|... +++.+|.-|.+... |.+- +...|. .++|. +.
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~~-------Da~r-------I~~~g~pvvqi~tG~-~C 166 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTVN-------DAAR-------IRATGTPAIQVNTGK-GC 166 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcHH-------HHHH-------HHhcCCcEEEecCCC-CC
Confidence 45668899999 99999999999987654 58899988875431 2111 111121 12332 22
Q ss_pred hhH--hhhhcHHHHHHHHhhccCCCCEEEEeCCCCc-ccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-CHHHHHH
Q 023298 93 CME--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQI-ELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFIS 168 (284)
Q Consensus 93 ~~e--~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~-e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-~~~~~i~ 168 (284)
+.+ .+...+ . .|... +.+++||++-|.. ....+ .+.. .... .+++..... .|.++=
T Consensus 167 hl~a~mv~~Al-~----~L~~~-~~d~liIEnvGnLvcPa~f---------dlge-~~~v---~vlsV~eg~dkplKyp- 226 (290)
T PRK10463 167 HLDAQMIADAA-P----RLPLD-DNGILFIENVGNLVCPASF---------DLGE-KHKV---AVLSVTEGEDKPLKYP- 226 (290)
T ss_pred cCcHHHHHHHH-H----HHhhc-CCcEEEEECCCCccCCCcc---------chhh-ceeE---EEEECccccccchhcc-
Confidence 222 122222 1 22221 5689999999963 21110 1211 1122 234433221 233220
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCccccch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEec
Q 023298 169 GCMASLSAMVQLELPHVNILSKMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDL 247 (284)
Q Consensus 169 ~~l~~l~~~~~~~~p~IlVlNK~Dll~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa 247 (284)
..+..+-++|+||+|++... ++++.++ ..+-....+..++++||
T Consensus 227 ---------~~f~~ADIVVLNKiDLl~~~~~dle~~~--------------------------~~lr~lnp~a~I~~vSA 271 (290)
T PRK10463 227 ---------HMFAAASLMLLNKVDLLPYLNFDVEKCI--------------------------ACAREVNPEIEIILISA 271 (290)
T ss_pred ---------chhhcCcEEEEEhHHcCcccHHHHHHHH--------------------------HHHHhhCCCCcEEEEEC
Confidence 01346889999999997521 1233222 11112335689999999
Q ss_pred cCcccHHHHHHHHHH
Q 023298 248 RKESSIRYVLSQIDN 262 (284)
Q Consensus 248 ~~~~~l~~Ll~~I~~ 262 (284)
++|+|++.|++.|.+
T Consensus 272 ~tGeGld~L~~~L~~ 286 (290)
T PRK10463 272 TSGEGMDQWLNWLET 286 (290)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999999876
No 278
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.85 E-value=7.6e-08 Score=84.36 Aligned_cols=187 Identities=12% Similarity=0.144 Sum_probs=98.5
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCcccc-cccc--ccHHHHhhhcCcccCchhhhhh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMD-IREL--ISLEDVMEELGLGPNGGLIYCM 94 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~d-ir~~--i~~~~vm~~~~lgPng~l~~~~ 94 (284)
|+.+.|+||. |||||++.++...+... .++.++..|..... +.. +++. +.-+.++ .+..||.. .|-
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~~~~-----~~~~~~~~~~~~~~~~~---~~~~~g~~-~~~ 70 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDIYTQE-----DAEFLVKNSALPPERIL---GVETGGCP-HTA 70 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcCChh-----HHHHHHHcCCCCcCcee---hhhcCCCc-cce
Confidence 5678999999 99999999999987654 46788887765421 000 0000 0000010 11112211 110
Q ss_pred H--hhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHH
Q 023298 95 E--HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 172 (284)
Q Consensus 95 e--~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~ 172 (284)
. .+.... ..|.+-+....+.++++|.|.|..-.... ...+ + +.++.++|+....+.....
T Consensus 71 ~~~~~~~~~-~~L~~l~~~~~~~D~iiIEt~G~~l~~~~-------~~~l-~----~~~i~vvD~~~~~~~~~~~----- 132 (199)
T TIGR00101 71 IREDASMNL-EAVAEMEARFPPLEMVFIESGGDNLSATF-------SPEL-A----DLTIFVIDVAAGDKIPRKG----- 132 (199)
T ss_pred eccCHHHHH-HHHHHHHhcCCCCCEEEEECCCCCccccc-------chhh-h----CcEEEEEEcchhhhhhhhh-----
Confidence 0 011111 11222222222568999999993211111 1112 1 3467788986543211100
Q ss_pred HHHHHHhcCCCEEEEecCCccccc-hhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhc-cCCceEEEEeccCc
Q 023298 173 SLSAMVQLELPHVNILSKMDLVTN-KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE-YSMVSFMPLDLRKE 250 (284)
Q Consensus 173 ~l~~~~~~~~p~IlVlNK~Dll~~-~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~-~~~~~~ipiSa~~~ 250 (284)
..+....-++++||+|+... ..++..+. +.+.. ....+++++||++|
T Consensus 133 ----~~qi~~ad~~~~~k~d~~~~~~~~~~~~~---------------------------~~~~~~~~~~~i~~~Sa~~g 181 (199)
T TIGR00101 133 ----GPGITRSDLLVINKIDLAPMVGADLGVME---------------------------RDAKKMRGEKPFIFTNLKTK 181 (199)
T ss_pred ----HhHhhhccEEEEEhhhccccccccHHHHH---------------------------HHHHHhCCCCCEEEEECCCC
Confidence 01222344899999999742 11222111 11122 23478999999999
Q ss_pred ccHHHHHHHHHHhc
Q 023298 251 SSIRYVLSQIDNCI 264 (284)
Q Consensus 251 ~~l~~Ll~~I~~~l 264 (284)
+|++++++.|.+.+
T Consensus 182 ~gi~el~~~i~~~~ 195 (199)
T TIGR00101 182 EGLDTVIDWIEHYA 195 (199)
T ss_pred CCHHHHHHHHHhhc
Confidence 99999999998764
No 279
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.85 E-value=3.4e-08 Score=84.79 Aligned_cols=123 Identities=11% Similarity=0.092 Sum_probs=64.3
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
++.++||||+......+. + .+.. .++++++.|.....+....-..++..+.. ..-+.|+|+|.||+|+..
T Consensus 50 ~l~i~Dt~g~~~~~~~~~----~--~~~~---a~~~llv~~i~~~~s~~~~~~~~~~~i~~-~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 50 QLALWDTAGQEEYERLRP----L--SYSK---AHVILIGFAVDTPDSLENVRTKWIEEVRR-YCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred EEEEEECCCChhccccch----h--hcCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEeeChhhhh
Confidence 578899999864321111 0 1222 24566666654322222211123332222 123689999999999854
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
............... . .....+...++...++.+||++|.|++++++.+.+..
T Consensus 120 ~~~~~~~~~~~~~~~---------~-------~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 120 DAVAKEEYRTQRFVP---------I-------QQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred CcccccccccCCcCC---------H-------HHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 221111100000000 0 0001222445667899999999999999999988654
No 280
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.84 E-value=3.7e-08 Score=85.10 Aligned_cols=124 Identities=10% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HH-HHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--IS-GCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~-~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+-+.||||+-... .+.+..-. ..+++++++|.. ++..| +. .+...+... ..+.|+++|.||+
T Consensus 51 ~~l~i~Dt~G~e~~~-------~l~~~~~~--~a~~~ilvydit---~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~ 117 (191)
T cd01875 51 VSLNLWDTAGQEEYD-------RLRTLSYP--QTNVFIICFSIA---SPSSYENVRHKWHPEVCHH-CPNVPILLVGTKK 117 (191)
T ss_pred EEEEEEECCCchhhh-------hhhhhhcc--CCCEEEEEEECC---CHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeCh
Confidence 467899999985411 12221111 135788888875 34444 22 233222221 2468999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+...........+.. ... ... ....++...++...++.+||++|+|++++++.+.+.+-
T Consensus 118 DL~~~~~~~~~~~~~~-------~~~-v~~------~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 118 DLRNDADTLKKLKEQG-------QAP-ITP------QQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred hhhcChhhHHHHhhcc-------CCC-CCH------HHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 9854321111111000 000 000 00122234456678999999999999999999987663
No 281
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.84 E-value=1.8e-07 Score=93.32 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=43.1
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHH-HHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~-~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++++.++||||+... .....+.+.. .+.+++++|+...-.+. ..+ +......++|.++++||+|
T Consensus 78 ~~~inliDTPG~~df------~~~~~~~l~~---aD~aIlVvDa~~gv~~~t~~l------~~~~~~~~iPiiv~iNK~D 142 (526)
T PRK00741 78 DCLINLLDTPGHEDF------SEDTYRTLTA---VDSALMVIDAAKGVEPQTRKL------MEVCRLRDTPIFTFINKLD 142 (526)
T ss_pred CEEEEEEECCCchhh------HHHHHHHHHH---CCEEEEEEecCCCCCHHHHHH------HHHHHhcCCCEEEEEECCc
Confidence 567899999997541 1223344544 36789999997532221 222 1223356899999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
+..
T Consensus 143 ~~~ 145 (526)
T PRK00741 143 RDG 145 (526)
T ss_pred ccc
Confidence 864
No 282
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.83 E-value=1.7e-07 Score=81.52 Aligned_cols=130 Identities=8% Similarity=0.049 Sum_probs=72.8
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
++.++||||+-+... . ...+++.+. ....++++++.+. .+...+..+... +.+.+.|+++|+||+|+..
T Consensus 53 ~l~l~DtpG~~~~~~--~-~~~~l~~~~-~~~~d~~l~v~~~-~~~~~d~~~~~~------l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 53 NVTLWDLPGIGSTAF--P-PDDYLEEMK-FSEYDFFIIISST-RFSSNDVKLAKA------IQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CceEEeCCCCCcccC--C-HHHHHHHhC-ccCcCEEEEEeCC-CCCHHHHHHHHH------HHHhCCCEEEEEecccchh
Confidence 678999999865321 1 223333332 1123556666554 344333333222 2345789999999999964
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC--CceEEEEecc--CcccHHHHHHHHHHhcCCC
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLR--KESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~--~~~~ipiSa~--~~~~l~~Ll~~I~~~l~~g 267 (284)
.......-.....+.++. .+...+.+.+...+ .-.++++|+. .+.++..|.+.|...||..
T Consensus 122 ~~~~~~~~~~~~~~~~l~-----------~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQ-----------EIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred hhhhccccccccHHHHHH-----------HHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 321111000000111112 23334445555433 3579999998 5789999999999988863
No 283
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.83 E-value=1.3e-08 Score=93.85 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=39.9
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHHhc-C-CceEEEecCcCCC
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCETV-R-RTMHIVNLDPAAE 59 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g-~~v~iVdLDPq~~ 59 (284)
|..++.+++++||. |||||++..|+.++... | ++|.+|+.||+..
T Consensus 190 ~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 190 ILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 45678889999999 99999999999999876 5 8999999999764
No 284
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.82 E-value=7.7e-08 Score=80.93 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=62.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHH-HHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~-~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.++.+.||||+.... .+. ..+.. .++++|++|+....+... ...++..+.. ...+.|+++|.||+|
T Consensus 43 ~~~l~i~Dt~G~~~~~-------~~~~~~~~~---ad~ii~V~D~t~~~s~~~-~~~~l~~~~~-~~~~~piilv~NK~D 110 (164)
T cd04162 43 DAIMELLEIGGSQNLR-------KYWKRYLSG---SQGLIFVVDSADSERLPL-ARQELHQLLQ-HPPDLPLVVLANKQD 110 (164)
T ss_pred CeEEEEEECCCCcchh-------HHHHHHHhh---CCEEEEEEECCCHHHHHH-HHHHHHHHHh-CCCCCcEEEEEeCcC
Confidence 4468999999975421 121 22333 367899999864321111 1222221111 125799999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccC------cccHHHHHHHHH
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK------ESSIRYVLSQID 261 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~------~~~l~~Ll~~I~ 261 (284)
+.... ....+. ..+. +.++..+. ...+++.||++ ++|+++++..+.
T Consensus 111 l~~~~-~~~~i~--------~~~~-------------~~~~~~~~-~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 111 LPAAR-SVQEIH--------KELE-------------LEPIARGR-RWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred CcCCC-CHHHHH--------HHhC-------------ChhhcCCC-ceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 85432 222111 0000 01111222 25688999999 999999888764
No 285
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.79 E-value=6.3e-08 Score=82.99 Aligned_cols=124 Identities=8% Similarity=0.035 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+-+.||||+-... .+.... ....+++++++|.....+-...+..++..+.... -+.|+|+|-||+|+.
T Consensus 49 ~~l~iwDt~G~~~~~-------~~~~~~--~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~ 118 (178)
T cd04131 49 IELSLWDTSGSPYYD-------NVRPLC--YPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLR 118 (178)
T ss_pred EEEEEEECCCchhhh-------hcchhh--cCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhh
Confidence 357889999974311 111111 1123578889998644332222234444333322 368999999999985
Q ss_pred cchhhhhhhcCcchHHHHHHhhh-cchhHHHHHHHHHHHHHhccCCceEEEEeccCccc-HHHHHHHHHHh
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDNC 263 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~-~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~-l~~Ll~~I~~~ 263 (284)
.......+.-. ... .-. .....++.+.++...++.+||++|++ +++++..+.++
T Consensus 119 ~~~~~~~~~~~---------~~~~~v~------~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 119 TDLSTLMELSH---------QRQAPVS------YEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred cChhHHHHHHh---------cCCCCCC------HHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 42111110000 000 000 00112333556656899999999995 99999988763
No 286
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.78 E-value=9.3e-08 Score=99.05 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=66.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+..+.|+||||+.. |. .+..+ .....+++++++|+.....+...- .+......+.|.|+|+||+|+
T Consensus 336 ~~~ItfiDTPGhe~-F~------~m~~r--ga~~aDiaILVVdAddGv~~qT~e-----~i~~a~~~~vPiIVviNKiDl 401 (787)
T PRK05306 336 GGKITFLDTPGHEA-FT------AMRAR--GAQVTDIVVLVVAADDGVMPQTIE-----AINHAKAAGVPIIVAINKIDK 401 (787)
T ss_pred CEEEEEEECCCCcc-ch------hHHHh--hhhhCCEEEEEEECCCCCCHhHHH-----HHHHHHhcCCcEEEEEECccc
Confidence 34689999999643 21 12221 112346788999986543333321 112233578999999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHHHHHHHHHH
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
.... ..... .++.. ++ .+.++++ ...++|+||++|.|++.|++.|..
T Consensus 402 ~~a~--~e~V~--------~eL~~-----~~-------~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 402 PGAN--PDRVK--------QELSE-----YG-------LVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred cccC--HHHHH--------HHHHH-----hc-------ccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 5321 11111 11110 00 0012233 368999999999999999998875
No 287
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.78 E-value=6.5e-08 Score=83.00 Aligned_cols=123 Identities=11% Similarity=0.128 Sum_probs=68.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++-|.||+|+-+.... ... .+.. .+.++++.|.....+-......++..+.... .+.|.++|-||+|+.
T Consensus 49 v~l~i~Dt~G~~~~~~~---~~~---~~~~---a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~ 118 (176)
T cd04133 49 VNLGLWDTAGQEDYNRL---RPL---SYRG---ADVFVLAFSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLR 118 (176)
T ss_pred EEEEEEECCCCcccccc---chh---hcCC---CcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhc
Confidence 46789999998542211 110 1222 3578888888643322221223444333222 368999999999996
Q ss_pred cchhhh-hhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 195 TNKKEI-EDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 195 ~~~~~l-~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
..+... ...-... +. .....++...++...++.+||++|.|++++++.+.+.+
T Consensus 119 ~~~~~~~~~~~~~~-------v~----------~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 119 DDKQYLADHPGASP-------IT----------TAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred cChhhhhhccCCCC-------CC----------HHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 432110 0000000 00 00011222445545799999999999999999998864
No 288
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.77 E-value=1.4e-07 Score=90.70 Aligned_cols=117 Identities=14% Similarity=0.208 Sum_probs=72.8
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhh-----cCcccCchh
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEE-----LGLGPNGGL 90 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~-----~~lgPng~l 90 (284)
..|..|+++|-- |||||+|.-||.||.++|++|++|-+|.....- ++ .+ ..+-++ |+.+++-..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA-----~e--QL---~~La~q~~v~~f~~~~~~~P 167 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAA-----IE--QL---KQLAEQVGVPFFGSGTEKDP 167 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHH-----HH--HH---HHHHHHcCCceecCCCCCCH
Confidence 358999999998 999999999999999999999999999876421 10 11 000011 121111111
Q ss_pred hhhhHhhhhcHHHHHHHHhhccC--CCCEEEEeCCCCcccccccchHHHHHHHHH---hcCCCeEEEEEecCCCC
Q 023298 91 IYCMEHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQIELFTHVPVLRNFVDHLK---SRNFNVCAVYLLDSQFI 160 (284)
Q Consensus 91 ~~~~e~~~~~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~~~~~~~~l~~~l~---~~d~~~vil~LiDa~~~ 160 (284)
+ ++.++.++..+ .++++||||.|.+.. -+.|+..+. +.-.++=+++++|+...
T Consensus 168 v-----------~Iak~al~~ak~~~~DvvIvDTAGRl~i------de~Lm~El~~Ik~~~~P~E~llVvDam~G 225 (451)
T COG0541 168 V-----------EIAKAALEKAKEEGYDVVIVDTAGRLHI------DEELMDELKEIKEVINPDETLLVVDAMIG 225 (451)
T ss_pred H-----------HHHHHHHHHHHHcCCCEEEEeCCCcccc------cHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 1 11222333222 579999999998763 233544442 22225668999999643
No 289
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.77 E-value=2e-07 Score=94.08 Aligned_cols=129 Identities=20% Similarity=0.299 Sum_probs=66.2
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
.+.|+||||+.. |. .+... .....+++++++|+...-.+..+-. +..+...+.|.++|+||+|+..
T Consensus 72 ~i~~iDTPG~e~-f~------~~~~~--~~~~aD~~IlVvDa~~g~~~qt~e~-----i~~~~~~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 72 GLLFIDTPGHEA-FT------NLRKR--GGALADIAILVVDINEGFQPQTIEA-----INILKRRKTPFVVAANKIDRIP 137 (586)
T ss_pred CEEEEECCChHH-HH------HHHHH--hHhhCCEEEEEEECCCCCCHhHHHH-----HHHHHHcCCCEEEEEECcCCch
Confidence 479999999753 21 11111 1122468999999975433444321 1223356899999999999852
Q ss_pred chh-hh-hhhcCc---chHHHHHHhhhcchhHHHHHHHHHH---------HHHhcc-CCceEEEEeccCcccHHHHHHHH
Q 023298 196 NKK-EI-EDYLNP---ESQFLLSELNQHMAPQFAKLNKSLI---------ELVDEY-SMVSFMPLDLRKESSIRYVLSQI 260 (284)
Q Consensus 196 ~~~-~l-~~~l~~---~~~~l~~~l~~~~~~~~~~l~~~i~---------~~l~~~-~~~~~ipiSa~~~~~l~~Ll~~I 260 (284)
... .. ..+.+. ........+ .....++...+. .-+.++ +...++|+||.+|+|+++|++.+
T Consensus 138 ~~~~~~~~~~~e~~~~~~~~v~~~f----~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i 213 (586)
T PRK04004 138 GWKSTEDAPFLESIEKQSQRVQQEL----EEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVL 213 (586)
T ss_pred hhhhhcCchHHHHHhhhhHHHHHHH----HHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHH
Confidence 110 00 011100 000000000 000111111111 001222 34789999999999999999887
Q ss_pred HH
Q 023298 261 DN 262 (284)
Q Consensus 261 ~~ 262 (284)
..
T Consensus 214 ~~ 215 (586)
T PRK04004 214 AG 215 (586)
T ss_pred HH
Confidence 64
No 290
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.76 E-value=1e-07 Score=85.57 Aligned_cols=125 Identities=12% Similarity=0.088 Sum_probs=67.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..+.|.||+|+.. | . .+... +.. .+++++++|.....+-...+..|+..+.... -+.|+|+|.||+|+
T Consensus 61 v~l~iwDTaG~e~-~--~----~~~~~~~~~---ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL 129 (232)
T cd04174 61 VELSLWDTSGSPY-Y--D----NVRPLCYSD---SDAVLLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDL 129 (232)
T ss_pred EEEEEEeCCCchh-h--H----HHHHHHcCC---CcEEEEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccc
Confidence 3678999999743 1 1 12121 222 4678889998633222221223433332222 36799999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcc-cHHHHHHHHHHhc
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~-~l~~Ll~~I~~~l 264 (284)
......+.+...... ..+. .....++.+.++...|+..||++|+ |+++++..+.+..
T Consensus 130 ~~~~~~~~~l~~~~~----~~Vs----------~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 130 RTDLSTLMELSNQKQ----APIS----------YEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred ccccchhhhhccccC----CcCC----------HHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 532111111000000 0000 0011233355665679999999998 8999999886653
No 291
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.2e-07 Score=90.52 Aligned_cols=105 Identities=19% Similarity=0.321 Sum_probs=61.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-------CCHHHHHHHHHHHHHHHHhcCC-CEE
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-------TDVTKFISGCMASLSAMVQLEL-PHV 185 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-------~~~~~~i~~~l~~l~~~~~~~~-p~I 185 (284)
.+.+.|+|||| |. ...+.|+.-.. ..++.+++||+... ..+...-..+|. . -+++ ..|
T Consensus 84 k~~~tIiDaPG-Hr-----dFvknmItGas---qAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La---~--tlGi~~lI 149 (428)
T COG5256 84 KYNFTIIDAPG-HR-----DFVKNMITGAS---QADVAVLVVDARDGEFEAGFGVGGQTREHAFLA---R--TLGIKQLI 149 (428)
T ss_pred CceEEEeeCCc-hH-----HHHHHhhcchh---hccEEEEEEECCCCccccccccCCchhHHHHHH---H--hcCCceEE
Confidence 45689999999 43 22333433332 24689999999754 122222222211 1 1333 457
Q ss_pred EEecCCcccc-chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcccHHH
Q 023298 186 NILSKMDLVT-NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRY 255 (284)
Q Consensus 186 lVlNK~Dll~-~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~l~~ 255 (284)
+++||+|.++ ++. +|.+.-..+..+++.+++ ..|+|+|+..|+|+..
T Consensus 150 VavNKMD~v~wde~-----------------------rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 150 VAVNKMDLVSWDEE-----------------------RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEEEcccccccCHH-----------------------HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 7899999985 221 222223333445566655 4699999999999875
No 292
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.76 E-value=1.9e-07 Score=89.26 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=38.7
Q ss_pred ccccCceEEEEECCC-CcHHHHHHHHHHHHHh-cC-CceEEEecCcCC
Q 023298 14 SWLYALVIKCVFSPP-PNQSTYCSSLYRHCET-VR-RTMHIVNLDPAA 58 (284)
Q Consensus 14 ~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~-~g-~~v~iVdLDPq~ 58 (284)
.|+.+...++++||. |||||++..|+.++.. .| ++|.+|..|+..
T Consensus 132 ~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 132 ALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 467777889999999 9999999999998764 46 699999999974
No 293
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.75 E-value=1.1e-07 Score=81.87 Aligned_cols=124 Identities=8% Similarity=0.074 Sum_probs=67.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..+-+.||+|+-+.. .+... +.. .+++++++|.....+-......++..+.... -+.|.|+|.||+|+
T Consensus 53 ~~l~iwDtaG~e~~~-------~~~~~~~~~---ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL 121 (182)
T cd04172 53 IELSLWDTSGSPYYD-------NVRPLSYPD---SDAVLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDL 121 (182)
T ss_pred EEEEEEECCCchhhH-------hhhhhhcCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhh
Confidence 357889999974311 12111 222 3678889997633222222234443332222 36899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCccc-HHHHHHHHHHh
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDNC 263 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~-l~~Ll~~I~~~ 263 (284)
......+...... -...-. .....++...++...|+.+||++|.| +++++..+.++
T Consensus 122 ~~~~~~~~~~~~~--------~~~~v~------~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 122 RTDLTTLVELSNH--------RQTPVS------YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred hcChhhHHHHHhc--------CCCCCC------HHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 5321111100000 000000 00112333556666899999999998 99999887763
No 294
>PRK13351 elongation factor G; Reviewed
Probab=98.75 E-value=3e-07 Score=94.50 Aligned_cols=67 Identities=19% Similarity=0.258 Sum_probs=42.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHH-HHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~-~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+.+. .......+.. .+.+++++|+....... ..+. ......++|+++|+||+|
T Consensus 72 ~~~i~liDtPG~~df------~~~~~~~l~~---aD~~ilVvd~~~~~~~~~~~~~------~~~~~~~~p~iiviNK~D 136 (687)
T PRK13351 72 NHRINLIDTPGHIDF------TGEVERSLRV---LDGAVVVFDAVTGVQPQTETVW------RQADRYGIPRLIFINKMD 136 (687)
T ss_pred CEEEEEEECCCcHHH------HHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHH------HHHHhcCCCEEEEEECCC
Confidence 558899999997651 1122333433 36788899987543222 2122 223356899999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
+..
T Consensus 137 ~~~ 139 (687)
T PRK13351 137 RVG 139 (687)
T ss_pred CCC
Confidence 875
No 295
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.74 E-value=1.2e-08 Score=89.08 Aligned_cols=122 Identities=22% Similarity=0.227 Sum_probs=93.0
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCC-----CccccccccccHHHHhhhcCcccCchhhhh
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-----PVAMDIRELISLEDVMEELGLGPNGGLIYC 93 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~-----~~~~dir~~i~~~~vm~~~~lgPng~l~~~ 93 (284)
..++|+|++ |||||++..|..+....++.+.+++.+|+....++ ....|+++......+|..|..|++|.++..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 569999999 99999999999999888899999999999987666 234588888888889999999999988654
Q ss_pred hHh----hhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHH
Q 023298 94 MEH----LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHL 142 (284)
Q Consensus 94 ~e~----~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l 142 (284)
... .....+.|... +......++.++++|+.++.+.+......+.+.+
T Consensus 86 d~~~~~~~~~~~~~~~~~-l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~ 137 (219)
T COG1100 86 DSTLRESSDELTEEWLEE-LRELAPDDVPILLVGNKIDLFDEQSSSEEILNQL 137 (219)
T ss_pred ecccchhhhHHHHHHHHH-HHHhCCCCceEEEEecccccccchhHHHHHHhhh
Confidence 332 23334345543 3332134789999999999887766665555544
No 296
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.74 E-value=2.4e-07 Score=84.99 Aligned_cols=151 Identities=10% Similarity=0.157 Sum_probs=82.0
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhh
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 98 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~ 98 (284)
..++++|+. +||||++..++.++...+++|.+|+.|++.-.. +..+.... +..++ |-- ....-+.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~-------~~ql~~~~---~~~~~-~~~-~~~~~~~l~ 143 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGT-------VQQLQDYV---KTIGF-EVI-AVRDEAAMT 143 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHH-------HHHHHHHh---hhcCc-eEE-ecCCHHHHH
Confidence 569999999 999999999999998889999999999885210 00000000 11111 100 000001111
Q ss_pred hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 023298 99 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 178 (284)
Q Consensus 99 ~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~ 178 (284)
+.++ .+.+..++++|+|||||... ........+.+.+.... .+-+++++++.... .+.. ..+. .+.
T Consensus 144 ----~~l~-~l~~~~~~D~ViIDt~Gr~~--~~~~~l~el~~~~~~~~-~~~~~LVl~a~~~~--~d~~-~~~~---~f~ 209 (270)
T PRK06731 144 ----RALT-YFKEEARVDYILIDTAGKNY--RASETVEEMIETMGQVE-PDYICLTLSASMKS--KDMI-EIIT---NFK 209 (270)
T ss_pred ----HHHH-HHHhcCCCCEEEEECCCCCc--CCHHHHHHHHHHHhhhC-CCeEEEEEcCccCH--HHHH-HHHH---HhC
Confidence 1111 22222257999999999864 22233444444443222 34567788875332 2211 1111 122
Q ss_pred hcCCCEEEEecCCccccch
Q 023298 179 QLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 179 ~~~~p~IlVlNK~Dll~~~ 197 (284)
.. .+.=++++|.|-..+.
T Consensus 210 ~~-~~~~~I~TKlDet~~~ 227 (270)
T PRK06731 210 DI-HIDGIVFTKFDETASS 227 (270)
T ss_pred CC-CCCEEEEEeecCCCCc
Confidence 22 3567889999976543
No 297
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.74 E-value=4.8e-08 Score=83.46 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=65.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH-HHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l-~~~~~~~~p~IlVlNK~D 192 (284)
+..+.+.|.+|+........ ..+.. .+.++|+||+....+-.+. ...+..+ ......++|+++++||.|
T Consensus 57 ~~~~~~~d~gG~~~~~~~w~------~y~~~---~~~iIfVvDssd~~~l~e~-~~~L~~ll~~~~~~~~piLIl~NK~D 126 (175)
T PF00025_consen 57 GYSLTIWDLGGQESFRPLWK------SYFQN---ADGIIFVVDSSDPERLQEA-KEELKELLNDPELKDIPILILANKQD 126 (175)
T ss_dssp TEEEEEEEESSSGGGGGGGG------GGHTT---ESEEEEEEETTGGGGHHHH-HHHHHHHHTSGGGTTSEEEEEEESTT
T ss_pred cEEEEEEeccccccccccce------eeccc---cceeEEEEecccceeeccc-ccchhhhcchhhcccceEEEEecccc
Confidence 45789999999865321100 11222 4689999999754322221 1111111 111224789999999999
Q ss_pred cccch--hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 193 LVTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 193 ll~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+.... .++...+. +. -+..-....+++.||.+|+|+.+.++-|.+.
T Consensus 127 ~~~~~~~~~i~~~l~---------l~----------------~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 127 LPDAMSEEEIKEYLG---------LE----------------KLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp STTSSTHHHHHHHTT---------GG----------------GTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ccCcchhhHHHhhhh---------hh----------------hcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 85422 12222221 00 0111224679999999999999999887654
No 298
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3.7e-08 Score=90.57 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=74.8
Q ss_pred hccccccc-CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccc---cccccccHHHHhhhcCc
Q 023298 10 KGYMSWLY-ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAM---DIRELISLEDVMEELGL 84 (284)
Q Consensus 10 ~~~~~~~~-~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~---dir~~i~~~~vm~~~~l 84 (284)
|--|+-+. ||. ++|+|+. .||||+|..|..|.-+.+++++.+||||++..+-+|+.+ .+.++++.++-.++..+
T Consensus 90 k~rm~n~e~gp~-v~vvGgsq~Gkts~~~tL~syalk~~~~pl~~nlDP~Qp~~~~PG~iSa~h~~~ilD~q~~~wGqSl 168 (424)
T COG5623 90 KRRMFNYEKGPT-VMVVGGSQNGKTSFCFTLISYALKLGKKPLFTNLDPSQPGNIFPGAISAIHVDAILDCQEGLWGQSL 168 (424)
T ss_pred hhcccccccCCE-EEEECCCcCCceeHHHHHHHHHHHhcCCceEEecCCCCcccccCccccccchhhhhhhhcccccccc
Confidence 33466666 555 9999999 999999999999999999999999999998866565433 33444444443332222
Q ss_pred --ccCc-----hhh--hhhHhhhhcHHHH------HHHHhh----cc--CCCCEEEEeCCCCcccc
Q 023298 85 --GPNG-----GLI--YCMEHLEDNLDDW------LAEELD----NY--LDDDYLVFDCPGQIELF 129 (284)
Q Consensus 85 --gPng-----~l~--~~~e~~~~~~~~~------l~~~l~----~~--~~~~~viiDtPg~~e~~ 129 (284)
||.. .++ ++++...+|.+-+ |.+.+. .. .+...+++|||.+.+..
T Consensus 169 tsGaTll~~K~Plv~nfGl~~i~eN~~LY~l~~s~L~~aV~~r~hl~~d~r~sgC~vdTpSIsqld 234 (424)
T COG5623 169 TSGATLLRLKNPLVFNFGLTEITENMELYDLQTSKLQEAVKARNHLVEDLRLSGCPVDTPSISQLD 234 (424)
T ss_pred cccchhhhccCceEEecccCccccCHHHHHHHHHHHHHHHHhhhccCccceeecCccCCcchhhhh
Confidence 2210 011 2344455555321 222221 11 14578999999977644
No 299
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.72 E-value=9.5e-07 Score=88.19 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=42.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC-HHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~-~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+.. | .....+.+.. .+++++++|+...-. ....+.. .....++|.++++||+|
T Consensus 79 ~~~inliDTPG~~d-f-----~~~~~~~l~~---aD~aIlVvDa~~gv~~~t~~l~~------~~~~~~~PiivviNKiD 143 (527)
T TIGR00503 79 DCLVNLLDTPGHED-F-----SEDTYRTLTA---VDNCLMVIDAAKGVETRTRKLME------VTRLRDTPIFTFMNKLD 143 (527)
T ss_pred CeEEEEEECCChhh-H-----HHHHHHHHHh---CCEEEEEEECCCCCCHHHHHHHH------HHHhcCCCEEEEEECcc
Confidence 56889999999742 1 1223334443 468899999975322 2222222 22346789999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
+..
T Consensus 144 ~~~ 146 (527)
T TIGR00503 144 RDI 146 (527)
T ss_pred ccC
Confidence 853
No 300
>PTZ00258 GTP-binding protein; Provisional
Probab=98.71 E-value=7.4e-07 Score=85.64 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQ 158 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~ 158 (284)
..++.++||||.++... ....+++++.+++. .++++|+||+.
T Consensus 84 ~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~---aD~il~VVd~f 126 (390)
T PTZ00258 84 PAQLDITDIAGLVKGASEGEGLGNAFLSHIRA---VDGIYHVVRAF 126 (390)
T ss_pred CCCeEEEECCCcCcCCcchhHHHHHHHHHHHH---CCEEEEEEeCC
Confidence 56899999999886432 22455667777765 46899999984
No 301
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.71 E-value=2.8e-07 Score=84.28 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=82.6
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCcccc----cccccc---HHHH-----hhhcCcccC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMD----IRELIS---LEDV-----MEELGLGPN 87 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~d----ir~~i~---~~~v-----m~~~~lgPn 87 (284)
+.+.-|.| +||||.+.|||..+++.|+||.+||+|=-....+.-...+ +.+... +.++ ++...++|-
T Consensus 60 I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi~~~ 139 (265)
T COG0489 60 IAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSILPL 139 (265)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEEEEec
Confidence 34455667 9999999999999999999999999997766432110000 111100 1121 122333333
Q ss_pred ch--hhhhhHh-hhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHH
Q 023298 88 GG--LIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT 164 (284)
Q Consensus 88 g~--l~~~~e~-~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~ 164 (284)
+. ... -+. ....+.+++.+.... +++|+||||||..... .-.+ ++. ..+-+++++-.... .
T Consensus 140 ~~~p~~~-r~~l~s~~~~qll~~~~~~--~~D~vIID~PP~~g~~-----d~~i---~~~--~~~g~viVt~p~~~---~ 203 (265)
T COG0489 140 GPVPVIP-RGLLGSKAMLQLLEDVLWG--EYDYVIIDTPPGTGDA-----DATV---LQR--IPDGVVIVTTPGKT---A 203 (265)
T ss_pred CCCCCCC-hHhhhhHHHHHHHHHHhcc--CCCEEEEeCCCCchHH-----HHHH---Hhc--cCCeEEEEeCCccc---h
Confidence 22 111 111 122333444433332 4899999999965421 1111 222 23345555433211 1
Q ss_pred HHHHHHHHHHHHHHhcCCCEEE-EecCCcccc
Q 023298 165 KFISGCMASLSAMVQLELPHVN-ILSKMDLVT 195 (284)
Q Consensus 165 ~~i~~~l~~l~~~~~~~~p~Il-VlNK~Dll~ 195 (284)
.....+++..+.+.+.|++- |.|+.+...
T Consensus 204 --~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~ 233 (265)
T COG0489 204 --LEDVKKAIDMLEKAGIPVLGVVENMSYFIC 233 (265)
T ss_pred --HHHHHHHHHHHHhcCCceEEEEecCccCcc
Confidence 22233445666778888864 578777654
No 302
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=98.71 E-value=1e-07 Score=84.23 Aligned_cols=106 Identities=18% Similarity=0.238 Sum_probs=64.3
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCC----Cc--cccccc----cccHHHHhhhcCcccCc
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY----PV--AMDIRE----LISLEDVMEELGLGPNG 88 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~----~~--~~dir~----~i~~~~vm~~~~lgPng 88 (284)
.+++--|.| |||||++.|++..|++.|+||.+||.|-+--++.. +. -+|+=+ -.++.+.+-+..-.+|-
T Consensus 4 iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL 83 (272)
T COG2894 4 IIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLENL 83 (272)
T ss_pred EEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCce
Confidence 344555778 99999999999999999999999999999876431 10 011111 11222222122223444
Q ss_pred hhhhhhHh-----hhh-cHHHHHHHHhhccCCCCEEEEeCCCCcc
Q 023298 89 GLIYCMEH-----LED-NLDDWLAEELDNYLDDDYLVFDCPGQIE 127 (284)
Q Consensus 89 ~l~~~~e~-----~~~-~~~~~l~~~l~~~~~~~~viiDtPg~~e 127 (284)
-++.+.+. +.. .+ +++-++|.+. +++||++|+|..+|
T Consensus 84 ~lLPAsQtrdKdalt~E~v-~~vv~eL~~~-~fDyIi~DsPAGIE 126 (272)
T COG2894 84 FLLPASQTRDKDALTPEGV-KKVVNELKAM-DFDYIIIDSPAGIE 126 (272)
T ss_pred EecccccccCcccCCHHHH-HHHHHHHHhc-CCCEEEecCcchHH
Confidence 44443221 111 11 2344555542 78999999999888
No 303
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=98.71 E-value=1.8e-08 Score=90.72 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=29.3
Q ss_pred EEEECC--C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 22 KCVFSP--P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 22 ~~viG~--~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
++|+|+ | |||||.+.|+|..|+..|++|-++|+|..+..
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S 43 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPS 43 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-H
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 556655 6 99999999999999999999999999997654
No 304
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.70 E-value=3.1e-07 Score=77.12 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=62.5
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlNK~D 192 (284)
.+-+.||+|+-. . ..... .+++++++|... +..| +..++..+..... .+.|.++|.||.|
T Consensus 48 ~l~i~D~~g~~~--------~---~~~~~---~~~~ilv~d~~~---~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~D 110 (158)
T cd04103 48 LLLIRDEGGAPD--------A---QFASW---VDAVIFVFSLEN---EASFQTVYNLYHQLSSYRNISEIPLILVGTQDA 110 (158)
T ss_pred EEEEEECCCCCc--------h---hHHhc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHH
Confidence 467889999843 0 11222 357888898863 3333 2334333333222 3579999999999
Q ss_pred cccc-hhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 193 LVTN-KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 193 ll~~-~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+... ...+... .. .++.+..+...|+.+||++|.|+++++..+.+.
T Consensus 111 l~~~~~~~v~~~----------------------~~---~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 111 ISESNPRVIDDA----------------------RA---RQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred hhhcCCcccCHH----------------------HH---HHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 7421 1011100 00 111123334689999999999999999988753
No 305
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.70 E-value=1.3e-07 Score=87.67 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=39.8
Q ss_pred cCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHH
Q 023298 180 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ 259 (284)
Q Consensus 180 ~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~ 259 (284)
.-+|.+.|+||+|+.+.+ ++.... + ..+.+|+||..+.|+++|.+.
T Consensus 238 vY~p~l~v~NKiD~~~~e-~~~~l~------------------------------~---~~~~v~isa~~~~nld~L~e~ 283 (365)
T COG1163 238 VYKPALYVVNKIDLPGLE-ELERLA------------------------------R---KPNSVPISAKKGINLDELKER 283 (365)
T ss_pred eeeeeEEEEecccccCHH-HHHHHH------------------------------h---ccceEEEecccCCCHHHHHHH
Confidence 358999999999987643 333222 1 128899999999999999999
Q ss_pred HHHhcC
Q 023298 260 IDNCIQ 265 (284)
Q Consensus 260 I~~~l~ 265 (284)
|-+.+.
T Consensus 284 i~~~L~ 289 (365)
T COG1163 284 IWDVLG 289 (365)
T ss_pred HHHhhC
Confidence 998875
No 306
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.69 E-value=3.9e-08 Score=79.09 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=34.0
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
+++.|.| +||||++.+++.++++.|++|++||.||
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 7899999 9999999999999999999999999999
No 307
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.69 E-value=4.7e-07 Score=79.30 Aligned_cols=74 Identities=22% Similarity=0.354 Sum_probs=43.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH-HH--HHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SA--MVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l-~~--~~~~~~p~IlVlNK 190 (284)
+..+.++||||+... ...+...+... ...++|++|+....+.-.....++..+ .. ....+.|+++|.||
T Consensus 47 ~~~~~l~D~pG~~~~------~~~~~~~~~~~--~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK 118 (203)
T cd04105 47 GKKFRLVDVPGHPKL------RDKLLETLKNS--AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNK 118 (203)
T ss_pred CceEEEEECCCCHHH------HHHHHHHHhcc--CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecc
Confidence 456899999997642 12233334331 257999999976521111122332221 11 12247999999999
Q ss_pred Ccccc
Q 023298 191 MDLVT 195 (284)
Q Consensus 191 ~Dll~ 195 (284)
+|+..
T Consensus 119 ~Dl~~ 123 (203)
T cd04105 119 QDLFT 123 (203)
T ss_pred hhhcc
Confidence 99865
No 308
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.69 E-value=7.6e-07 Score=76.47 Aligned_cols=169 Identities=19% Similarity=0.185 Sum_probs=100.0
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhh
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLE 98 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~ 98 (284)
..|+|+||= +||||+..++++ +....++.|-......- -|.... -.++|++
T Consensus 11 ~KIvv~G~~~agKtTfv~~~s~------k~~v~t~~~~~~~s~k~-----kr~tTv------a~D~g~~----------- 62 (187)
T COG2229 11 TKIVVIGPVGAGKTTFVRALSD------KPLVITEADASSVSGKG-----KRPTTV------AMDFGSI----------- 62 (187)
T ss_pred eeEEEEcccccchhhHHHHhhc------cccceeecccccccccc-----ccceeE------eecccce-----------
Confidence 348999999 999999999998 45555555533322111 111100 0122221
Q ss_pred hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC-HHHHHHHHHHHHHHH
Q 023298 99 DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAM 177 (284)
Q Consensus 99 ~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~-~~~~i~~~l~~l~~~ 177 (284)
+-+.+...=++|||||.. .+.|..-+.+ + +.-+++++|++...+ ....+-..+.
T Consensus 63 -----------~~~~~~~v~LfgtPGq~R-------F~fm~~~l~~-g-a~gaivlVDss~~~~~~a~~ii~f~~----- 117 (187)
T COG2229 63 -----------ELDEDTGVHLFGTPGQER-------FKFMWEILSR-G-AVGAIVLVDSSRPITFHAEEIIDFLT----- 117 (187)
T ss_pred -----------EEcCcceEEEecCCCcHH-------HHHHHHHHhC-C-cceEEEEEecCCCcchHHHHHHHHHh-----
Confidence 111135678999999865 2334444422 2 356788999975522 2232333322
Q ss_pred HhcC-CCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-CCceEEEEeccCcccHHH
Q 023298 178 VQLE-LPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIRY 255 (284)
Q Consensus 178 ~~~~-~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-~~~~~ipiSa~~~~~l~~ 255 (284)
..+ .|.++++||.|+.... .-+++ .++++.. --+.+++.+|.++++..+
T Consensus 118 -~~~~ip~vVa~NK~DL~~a~-ppe~i---------------------------~e~l~~~~~~~~vi~~~a~e~~~~~~ 168 (187)
T COG2229 118 -SRNPIPVVVAINKQDLFDAL-PPEKI---------------------------REALKLELLSVPVIEIDATEGEGARD 168 (187)
T ss_pred -hccCCCEEEEeeccccCCCC-CHHHH---------------------------HHHHHhccCCCceeeeecccchhHHH
Confidence 233 8999999999996532 11111 1222322 247899999999999999
Q ss_pred HHHHHHHhcCCCCCC
Q 023298 256 VLSQIDNCIQWGEDA 270 (284)
Q Consensus 256 Ll~~I~~~l~~g~d~ 270 (284)
.+..+.....++...
T Consensus 169 ~L~~ll~~~~~~~~~ 183 (187)
T COG2229 169 QLDVLLLKDLLGSAN 183 (187)
T ss_pred HHHHHHhhcccCccc
Confidence 999998885555443
No 309
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.69 E-value=1.2e-07 Score=81.95 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=40.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHH---HHhcCCCeEEEEEecCCCCC----CHHHHHHHHHHHHHHHHhcCCCEEE
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDH---LKSRNFNVCAVYLLDSQFIT----DVTKFISGCMASLSAMVQLELPHVN 186 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~---l~~~d~~~vil~LiDa~~~~----~~~~~i~~~l~~l~~~~~~~~p~Il 186 (284)
...+-+||+||+-.. + .++.+. +.. .-.|||+||+.... +..+++..+|..... .+.+.|+++
T Consensus 48 ~~~~~lvD~PGH~rl--r----~~~~~~~~~~~~---~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~-~~~~~piLI 117 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRL--R----SKLLDELKYLSN---AKGIIFVVDSSTDQKELRDVAEYLYDILSDTEV-QKNKPPILI 117 (181)
T ss_dssp GTCECEEEETT-HCC--C----HHHHHHHHHHGG---EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHC-CTT--EEEE
T ss_pred CCEEEEEECCCcHHH--H----HHHHHhhhchhh---CCEEEEEEeCccchhhHHHHHHHHHHHHHhhhh-ccCCCCEEE
Confidence 457899999997552 1 234444 323 35799999997432 223333333322111 235789999
Q ss_pred EecCCcccc
Q 023298 187 ILSKMDLVT 195 (284)
Q Consensus 187 VlNK~Dll~ 195 (284)
+.||.|+..
T Consensus 118 acNK~Dl~~ 126 (181)
T PF09439_consen 118 ACNKQDLFT 126 (181)
T ss_dssp EEE-TTSTT
T ss_pred EEeCccccc
Confidence 999999975
No 310
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.67 E-value=2.1e-07 Score=91.38 Aligned_cols=114 Identities=18% Similarity=0.282 Sum_probs=69.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHH--HHHHHHHHHHHHHHhcCC-CEEEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVT--KFISGCMASLSAMVQLEL-PHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~--~~i~~~l~~l~~~~~~~~-p~IlVlN 189 (284)
.+++.||||||+. ...+.|...+. ..+.++++||+... -.+. +.+. ....++. |.|+|+|
T Consensus 116 ~~~i~~IDtPGH~------~fi~~m~~g~~---~~D~alLVVda~~g~~~~qT~ehl~-------i~~~lgi~~iIVvlN 179 (460)
T PTZ00327 116 KRHVSFVDCPGHD------ILMATMLNGAA---VMDAALLLIAANESCPQPQTSEHLA-------AVEIMKLKHIIILQN 179 (460)
T ss_pred cceEeeeeCCCHH------HHHHHHHHHHh---hCCEEEEEEECCCCccchhhHHHHH-------HHHHcCCCcEEEEEe
Confidence 3578999999942 22333333333 34678999999753 2221 2211 1123444 5789999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhc--cCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~--~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+|+...+ .+++.++ + +.+++.. .....++|+||.+|+|++.|++.|++.+|.-
T Consensus 180 KiDlv~~~-~~~~~~~--------e---------------i~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 180 KIDLVKEA-QAQDQYE--------E---------------IRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred cccccCHH-HHHHHHH--------H---------------HHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 99997543 3332221 1 1111211 2346899999999999999999999877653
No 311
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.66 E-value=5.8e-07 Score=92.50 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=83.1
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHH-hcC-CceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhh
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCE-TVR-RTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIY 92 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~-~~g-~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~ 92 (284)
+.++.++.++||. |||||++..|+.++. ..| ++|.+|+.|++.-.. +..+-.+.+ .+++ |.- .+.
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA-------~eQL~~~a~---~~gv-pv~-~~~ 249 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGA-------LEQLRIYGR---ILGV-PVH-AVK 249 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHH-------HHHHHHHHH---hCCC-Ccc-ccC
Confidence 3456789999999 999999999999885 566 599999999765211 011111111 1121 210 000
Q ss_pred hhHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHH
Q 023298 93 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 172 (284)
Q Consensus 93 ~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~ 172 (284)
+- +-+.+.+++..++++|||||||... ........ +..+.......-+++++|+... ... +..+..
T Consensus 250 -------~~-~~l~~al~~~~~~D~VLIDTAGRs~--~d~~l~ee-l~~l~~~~~p~e~~LVLsAt~~--~~~-l~~i~~ 315 (767)
T PRK14723 250 -------DA-ADLRFALAALGDKHLVLIDTVGMSQ--RDRNVSEQ-IAMLCGVGRPVRRLLLLNAASH--GDT-LNEVVH 315 (767)
T ss_pred -------CH-HHHHHHHHHhcCCCEEEEeCCCCCc--cCHHHHHH-HHHHhccCCCCeEEEEECCCCc--HHH-HHHHHH
Confidence 11 1233445444467999999999765 22222222 2222222224457788888632 222 222211
Q ss_pred HHHHHHhc-C-CCEEEEecCCccccch
Q 023298 173 SLSAMVQL-E-LPHVNILSKMDLVTNK 197 (284)
Q Consensus 173 ~l~~~~~~-~-~p~IlVlNK~Dll~~~ 197 (284)
.+... . -+.=+|++|.|-..+-
T Consensus 316 ---~f~~~~~~~i~glIlTKLDEt~~~ 339 (767)
T PRK14723 316 ---AYRHGAGEDVDGCIITKLDEATHL 339 (767)
T ss_pred ---HHhhcccCCCCEEEEeccCCCCCc
Confidence 11111 0 2456889999976543
No 312
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=98.65 E-value=7.8e-08 Score=89.70 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=37.4
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
++.+++.|.| |||||.+..+|.+++++|+||++|..||+.+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 3579999999 9999999999999999999999999999987
No 313
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.65 E-value=4.1e-07 Score=82.04 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=76.9
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC-CCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF-DYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~-~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
.++-|.| |||||.+.+||.+++..|++|++||.|||...+ .|. ..+.+.+ ++|+...+ -..
T Consensus 6 ~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~-~l~~~~~----~i~~~~~i------------~~r 68 (241)
T PRK13886 6 MVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYK-ALNVRRL----NIMDGDEI------------NTR 68 (241)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHH-hcCCcce----ecccCCcc------------chh
Confidence 4444778 999999999999999999999999999998743 221 0111110 11110000 011
Q ss_pred cHHHHHHHHhhccCCCCEEEEeCCCCccc-ccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 023298 100 NLDDWLAEELDNYLDDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 178 (284)
Q Consensus 100 ~~~~~l~~~l~~~~~~~~viiDtPg~~e~-~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~ 178 (284)
.+++ +.+.+... +.+ +|||+++..-. +...-..+.+...+.+.+...++.+++....- . .+.+..+...+..+.
T Consensus 69 ~fD~-Lve~i~~~-~~d-vIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~gg~~-~-~dtl~~~~~l~~~~~ 143 (241)
T PRK13886 69 NFDA-LVEMIAST-EGD-VIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQA-L-LDTVSGFAQLASQFP 143 (241)
T ss_pred hHHH-HHHHHhcc-CCC-EEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECCCcc-c-HHHHHHHHHHHHHcC
Confidence 2212 22233221 334 78899874321 11111122334555666766666667765422 1 122322222222222
Q ss_pred hcCCCEEEEecC
Q 023298 179 QLELPHVNILSK 190 (284)
Q Consensus 179 ~~~~p~IlVlNK 190 (284)
.+.++|+++|-
T Consensus 144 -~~~~~Vvw~N~ 154 (241)
T PRK13886 144 -AECLFVVWLNP 154 (241)
T ss_pred -CCceEEEEecC
Confidence 25899999993
No 314
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.63 E-value=1.8e-07 Score=78.97 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=76.1
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhh-h-Hhh
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC-M-EHL 97 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~-~-e~~ 97 (284)
.++++|+. |||||+..++.... .|.++.++--|-+....... .++.. -.++ ..+ .|| =+.| + +.+
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d~~---~~~~~--~~~v---~~l-~~G-CiCC~~~~~l 69 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGIDNQ---LVVDT--DEEI---IEM-NNG-CICCTVRGDL 69 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchhHH---HHhCC--CceE---EEe-CCC-EeEeeCchhH
Confidence 37899999 99999999988753 47788887766554332110 01000 0000 111 232 2222 1 123
Q ss_pred hhcHHHHHHHHhh-ccCCCCEEEEeCCCCcccccccchHHHH-HH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q 023298 98 EDNLDDWLAEELD-NYLDDDYLVFDCPGQIELFTHVPVLRNF-VD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 174 (284)
Q Consensus 98 ~~~~~~~l~~~l~-~~~~~~~viiDtPg~~e~~~~~~~~~~l-~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l 174 (284)
...+.+.+.+.+. .. +.++|+|||||.++.. ...+.+ .+ .+.+.-..+.+++++|+..+...-... .. +
T Consensus 70 ~~~l~~l~~~~~~~~~-~~d~I~IEt~G~~~p~---~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~-~~---~ 141 (158)
T cd03112 70 IRALLDLLERLDAGKI-AFDRIVIETTGLADPG---PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQ-TE---A 141 (158)
T ss_pred HHHHHHHHHHHHhccC-CCCEEEEECCCcCCHH---HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhcc-HH---H
Confidence 3333222222222 22 6799999999987632 122222 11 222222235789999987553211111 11 1
Q ss_pred HHHHhcCCCEEEEecCCcc
Q 023298 175 SAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 175 ~~~~~~~~p~IlVlNK~Dl 193 (284)
.. +..---++|+||+|+
T Consensus 142 ~~--Qi~~ad~ivlnk~dl 158 (158)
T cd03112 142 QS--QIAFADRILLNKTDL 158 (158)
T ss_pred HH--HHHHCCEEEEecccC
Confidence 11 222345779999995
No 315
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.8e-07 Score=89.43 Aligned_cols=167 Identities=14% Similarity=0.144 Sum_probs=101.3
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 97 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~ 97 (284)
+--+.|+|+| |||||+...|++ ..+.+|-==|+.+ ||.+.. .+-
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~------~drsIVSpv~GTT----------RDaiea-------~v~------------ 312 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSR------EDRSIVSPVPGTT----------RDAIEA-------QVT------------ 312 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhc------CCceEeCCCCCcc----------hhhhee-------Eee------------
Confidence 3448999999 999999999987 4555554333322 221100 000
Q ss_pred hhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHH--HHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHH
Q 023298 98 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNF--VDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASL 174 (284)
Q Consensus 98 ~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l--~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l 174 (284)
+. +..+.++||.|+-| ......+++ .++-+++..++++++++|+... .+.+.-++..+...
T Consensus 313 -----------~~---G~~v~L~DTAGiRe--~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~ 376 (531)
T KOG1191|consen 313 -----------VN---GVPVRLSDTAGIRE--ESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETE 376 (531)
T ss_pred -----------cC---CeEEEEEecccccc--ccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHh
Confidence 11 55889999999887 333333333 3333344446899999999533 33333355555554
Q ss_pred HHHHhcC------CCEEEEecCCccccchhhhhh----hcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEE-
Q 023298 175 SAMVQLE------LPHVNILSKMDLVTNKKEIED----YLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFM- 243 (284)
Q Consensus 175 ~~~~~~~------~p~IlVlNK~Dll~~~~~l~~----~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~i- 243 (284)
....... .|.|+|.||+|++.+-.++.. +.+ . +-.+-..++
T Consensus 377 ~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~---------------------------~-~~~~~~~i~~ 428 (531)
T KOG1191|consen 377 GVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPS---------------------------A-EGRSVFPIVV 428 (531)
T ss_pred ccceEEEeccccccceEEEechhhccCccccccCCceeccc---------------------------c-ccCcccceEE
Confidence 4444433 899999999999875212222 110 0 112223444
Q ss_pred EEeccCcccHHHHHHHHHHhc
Q 023298 244 PLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 244 piSa~~~~~l~~Ll~~I~~~l 264 (284)
.+|+++++|++.|...+.+.+
T Consensus 429 ~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 429 EVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred EeeechhhhHHHHHHHHHHHH
Confidence 499999999999999887764
No 316
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.62 E-value=6.6e-07 Score=80.78 Aligned_cols=78 Identities=10% Similarity=0.144 Sum_probs=45.0
Q ss_pred CCCEEEEeCCCCccccccc--chHHHHHHH-HH-hc-CCCeEEEEEecCCCC-CCHHH-HHHHHHHHHHHHHhcCCCEEE
Q 023298 114 DDDYLVFDCPGQIELFTHV--PVLRNFVDH-LK-SR-NFNVCAVYLLDSQFI-TDVTK-FISGCMASLSAMVQLELPHVN 186 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~--~~~~~l~~~-l~-~~-d~~~vil~LiDa~~~-~~~~~-~i~~~l~~l~~~~~~~~p~Il 186 (284)
..++.+|||||........ ......++. .. .+ +.+.++++++|+..- ...+. -+. ..+...+.|++.
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia------~~ld~~~~rti~ 197 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLA------KEVDPQGERTIG 197 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHH------HHHHHcCCcEEE
Confidence 3689999999986421111 111112222 11 11 234589999998643 22221 122 233457899999
Q ss_pred EecCCccccch
Q 023298 187 ILSKMDLVTNK 197 (284)
Q Consensus 187 VlNK~Dll~~~ 197 (284)
|+||+|.+++.
T Consensus 198 ViTK~D~~~~~ 208 (240)
T smart00053 198 VITKLDLMDEG 208 (240)
T ss_pred EEECCCCCCcc
Confidence 99999998654
No 317
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.60 E-value=5.3e-07 Score=80.39 Aligned_cols=125 Identities=11% Similarity=0.054 Sum_probs=67.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+.|.||+|+.+.. .+.... ....+++++++|.....+-......+...+ ....-+.|+|+|.||+|+.
T Consensus 49 v~L~iwDt~G~e~~~-------~l~~~~--~~~~d~illvfdis~~~Sf~~i~~~w~~~~-~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 49 IELNMWDTSGSSYYD-------NVRPLA--YPDSDAVLICFDISRPETLDSVLKKWQGET-QEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred EEEEEEeCCCcHHHH-------HHhHHh--ccCCCEEEEEEECCCHHHHHHHHHHHHHHH-HhhCCCCCEEEEEECcccc
Confidence 357889999985421 121111 122468999999863322222122232211 1122468999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCccc-HHHHHHHHHHh
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDNC 263 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~-l~~Ll~~I~~~ 263 (284)
.....+....+.... -+. ...-.++.++.+...++..||+++++ +++++.....+
T Consensus 119 ~~~~~~~~~~~~~~~----pIs----------~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 119 TDLATLRELSKQRLI----PVT----------HEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred cchhhhhhhhhccCC----ccC----------HHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 432111111000000 000 00112333556667899999999885 99999877764
No 318
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.59 E-value=3e-07 Score=86.28 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=39.5
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
.+++++.|.| |||||++.++|.++++.|++|++|-.||+.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 4679999999 99999999999999999999999999999983
No 319
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.59 E-value=1.9e-07 Score=75.68 Aligned_cols=104 Identities=13% Similarity=0.188 Sum_probs=62.7
Q ss_pred EEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccch
Q 023298 118 LVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 118 viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
-.||||| |.+.|...-..++..++.+ ++++++--+. ++...+...+.. -..+|+|-|++|+|+.++.
T Consensus 40 ~~IDTPG--Ey~~~~~~Y~aL~tt~~da---dvi~~v~~an---d~~s~f~p~f~~-----~~~k~vIgvVTK~DLaed~ 106 (148)
T COG4917 40 GDIDTPG--EYFEHPRWYHALITTLQDA---DVIIYVHAAN---DPESRFPPGFLD-----IGVKKVIGVVTKADLAEDA 106 (148)
T ss_pred cccCCch--hhhhhhHHHHHHHHHhhcc---ceeeeeeccc---CccccCCccccc-----ccccceEEEEecccccchH
Confidence 4679999 4445555444454444432 4555544332 221111111110 2357899999999997544
Q ss_pred hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 198 KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 198 ~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
++... .+.+.+-|-..++.+|+.+..|+++|++.+..
T Consensus 107 -dI~~~---------------------------~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 107 -DISLV---------------------------KRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred -hHHHH---------------------------HHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 33221 23345566678999999999999999987754
No 320
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.58 E-value=3.3e-06 Score=75.31 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHH-HHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~-~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++++.++||||+.+. .......+.. .+.+++++|+.....+. ..+. ......++|.|+|+||+|
T Consensus 72 ~~~i~iiDTPG~~~f------~~~~~~~l~~---aD~~ilVvD~~~g~~~~t~~~l------~~~~~~~~p~ilviNKiD 136 (222)
T cd01885 72 EYLINLIDSPGHVDF------SSEVTAALRL---CDGALVVVDAVEGVCVQTETVL------RQALKERVKPVLVINKID 136 (222)
T ss_pred ceEEEEECCCCcccc------HHHHHHHHHh---cCeeEEEEECCCCCCHHHHHHH------HHHHHcCCCEEEEEECCC
Confidence 457889999998752 2223344543 36788899997543332 2221 122345789999999999
Q ss_pred cc
Q 023298 193 LV 194 (284)
Q Consensus 193 ll 194 (284)
+.
T Consensus 137 ~~ 138 (222)
T cd01885 137 RL 138 (222)
T ss_pred cc
Confidence 86
No 321
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=98.58 E-value=1.7e-07 Score=77.73 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=33.5
Q ss_pred eEEEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 20 VIKCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 20 ~~~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
+.+.|+||. +||||++.+||..+++.|++|++||+|+....
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~ 43 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPS 43 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-H
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence 357899974 99999999999999999999999999998873
No 322
>PTZ00099 rab6; Provisional
Probab=98.55 E-value=7.8e-07 Score=76.30 Aligned_cols=117 Identities=11% Similarity=0.127 Sum_probs=70.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..++.|.||||+..... +.. .+.. ++++++++|.....+-.. +..++..+......+.|+++|.||+|
T Consensus 28 ~v~l~iwDt~G~e~~~~-------~~~~~~~~---ad~~ilv~D~t~~~sf~~-~~~w~~~i~~~~~~~~piilVgNK~D 96 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRS-------LIPSYIRD---SAAAIVVYDITNRQSFEN-TTKWIQDILNERGKDVIIALVGNKTD 96 (176)
T ss_pred EEEEEEEECCChHHhhh-------ccHHHhCC---CcEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 35789999999865221 212 2322 468999999864321111 22333322222224678899999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
+...+ .+..- . .......++ ..++++||++|.|+.++++.|.+.+++-+
T Consensus 97 L~~~~-~v~~~------e-------------------~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 97 LGDLR-KVTYE------E-------------------GMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred ccccc-CCCHH------H-------------------HHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 85422 11100 0 011123343 36899999999999999999999987744
No 323
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.55 E-value=2.5e-06 Score=74.82 Aligned_cols=116 Identities=11% Similarity=0.155 Sum_probs=67.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+.+.||||+... ..+....-. + .+++++++|.....+.. .+..++..+... .-+.|+++|.||+|+.
T Consensus 58 i~i~~~Dt~g~~~~-------~~~~~~~~~-~-~~~~i~v~d~~~~~s~~-~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 58 ICFNVWDTAGQEKF-------GGLRDGYYI-K-GQCAIIMFDVTSRITYK-NVPNWHRDIVRV-CENIPIVLVGNKVDVK 126 (215)
T ss_pred EEEEEEECCCchhh-------hhhhHHHhc-c-CCEEEEEEECcCHHHHH-HHHHHHHHHHHh-CCCCCEEEEEECccCc
Confidence 36788999997431 112122211 1 35678888875322111 122333322222 2368999999999985
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDA 270 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~ 270 (284)
... ...+. .++....+ ..++++||++|.|++..+..|.+.+-..++.
T Consensus 127 ~~~-~~~~~---------------------------~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~ 173 (215)
T PTZ00132 127 DRQ-VKARQ---------------------------ITFHRKKN-LQYYDISAKSNYNFEKPFLWLARRLTNDPNL 173 (215)
T ss_pred ccc-CCHHH---------------------------HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhcccc
Confidence 322 10000 01112233 5789999999999999999998888766654
No 324
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=1.5e-06 Score=87.80 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=71.8
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
-+.+||||| +|.|+. +..+ ....+++++++||......|...= ++..+...+.|+|++|||+|.+.
T Consensus 541 g~lvIdtpg-hEsFtn------lRsr--gsslC~~aIlvvdImhGlepqtiE-----Si~lLR~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 541 GLLVIDTPG-HESFTN------LRSR--GSSLCDLAILVVDIMHGLEPQTIE-----SINLLRMRKTPFIVALNKIDRLY 606 (1064)
T ss_pred eeEEecCCC-chhhhh------hhhc--cccccceEEEEeehhccCCcchhH-----HHHHHHhcCCCeEEeehhhhhhc
Confidence 578999999 554432 1111 123356788899998776665531 23344567899999999999863
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHH----HHHHHHHHHHh-------------ccCCceEEEEeccCcccHHHHHH
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFA----KLNKSLIELVD-------------EYSMVSFMPLDLRKESSIRYVLS 258 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~----~l~~~i~~~l~-------------~~~~~~~ipiSa~~~~~l~~Ll~ 258 (284)
.|..+....+.+.+......... +|+.-+.++-+ .-.++.++|-||..|+|+.+|+.
T Consensus 607 ------gwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~ 680 (1064)
T KOG1144|consen 607 ------GWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLL 680 (1064)
T ss_pred ------ccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHH
Confidence 11111111111111111111111 11111111111 11357899999999999999998
Q ss_pred HHHHh
Q 023298 259 QIDNC 263 (284)
Q Consensus 259 ~I~~~ 263 (284)
.|...
T Consensus 681 llv~l 685 (1064)
T KOG1144|consen 681 LLVQL 685 (1064)
T ss_pred HHHHH
Confidence 87654
No 325
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=4.4e-07 Score=88.90 Aligned_cols=111 Identities=17% Similarity=0.218 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHH--hcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~--~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..+.|+||||+.. |+ .|. ..+..++++++|++...-.|... -++.-....+.|+|+++||+|
T Consensus 55 ~~itFiDTPGHeA-Ft----------~mRaRGa~vtDIaILVVa~dDGv~pQTi-----EAI~hak~a~vP~iVAiNKiD 118 (509)
T COG0532 55 PGITFIDTPGHEA-FT----------AMRARGASVTDIAILVVAADDGVMPQTI-----EAINHAKAAGVPIVVAINKID 118 (509)
T ss_pred ceEEEEcCCcHHH-HH----------HHHhcCCccccEEEEEEEccCCcchhHH-----HHHHHHHHCCCCEEEEEeccc
Confidence 4789999999543 22 133 24667899999999866555553 123344578999999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHHHHHHHHHHh
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
....+ ..... .++.+.. -.-+.|+ -..|+|+||++|+|+++|+..|.-.
T Consensus 119 k~~~n--p~~v~--------~el~~~g------------l~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 119 KPEAN--PDKVK--------QELQEYG------------LVPEEWGGDVIFVPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred CCCCC--HHHHH--------HHHHHcC------------CCHhhcCCceEEEEeeccCCCCHHHHHHHHHHH
Confidence 87432 11111 1111100 0013343 3789999999999999999988644
No 326
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.51 E-value=1.5e-06 Score=75.66 Aligned_cols=127 Identities=9% Similarity=0.088 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHH-HHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS-GCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~-~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
...+.+.||+|+.+... .+ .....++++++.|.....+-.. +. .++..+.... .+.|.|+|.||+|
T Consensus 65 ~v~l~iwDTaG~~~~~~----------~~-~~~~ad~iilv~d~t~~~Sf~~-~~~~w~~~i~~~~-~~~piilvgNK~D 131 (195)
T cd01873 65 SVSLRLWDTFGDHDKDR----------RF-AYGRSDVVLLCFSIASPNSLRN-VKTMWYPEIRHFC-PRVPVILVGCKLD 131 (195)
T ss_pred EEEEEEEeCCCChhhhh----------cc-cCCCCCEEEEEEECCChhHHHH-HHHHHHHHHHHhC-CCCCEEEEEEchh
Confidence 34678999999864111 11 1112467888898753322111 22 2333222221 3689999999999
Q ss_pred cccchh-hhhhhcCcchHHHHHHhhhcchhHHHHH-HHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 193 LVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKL-NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 193 ll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l-~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+..... ....... .+...... .+.. .....++...++. .++..||++|.|++++++.+.+.
T Consensus 132 L~~~~~~~~~~~~~----~~~~~~~~-----~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 132 LRYADLDEVNRARR----PLARPIKN-----ADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccccchhhhccc----cccccccc-----CCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 853210 0000000 00000000 0000 0001122244554 89999999999999999988753
No 327
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.47 E-value=2.2e-06 Score=84.45 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=36.7
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHH-hcC-CceEEEecCcCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCE-TVR-RTMHIVNLDPAA 58 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~-~~g-~~v~iVdLDPq~ 58 (284)
..++.++.++||. |||||++..|+.++. +.| ++|.+|+.|++.
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 4566789999999 999999999999985 455 589999999964
No 328
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=8e-07 Score=84.22 Aligned_cols=127 Identities=13% Similarity=0.154 Sum_probs=75.6
Q ss_pred cccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCccc-Cc
Q 023298 11 GYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGP-NG 88 (284)
Q Consensus 11 ~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgP-ng 88 (284)
.|.--..+|..|+++|-- |||||+|.-||.|+.++|++|.+|=.|.=... ++|-=.. --.+.++ | .|
T Consensus 93 ~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRag-----AfDQLkq-----nA~k~~i-P~yg 161 (483)
T KOG0780|consen 93 ALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAG-----AFDQLKQ-----NATKARV-PFYG 161 (483)
T ss_pred ccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccc-----hHHHHHH-----HhHhhCC-eeEe
Confidence 344556789999999999 99999999999999999999999988853321 0110000 0000010 1 00
Q ss_pred h--hhhhhHhhhhcHHHHHHHHhhccC--CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCC
Q 023298 89 G--LIYCMEHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 159 (284)
Q Consensus 89 ~--l~~~~e~~~~~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~ 159 (284)
+ -...+ .+..+.+++++ +.+.||+||.|.|. ....+...|.+--++.. ++.++|++|++-
T Consensus 162 syte~dpv--------~ia~egv~~fKke~fdvIIvDTSGRh~--qe~sLfeEM~~v~~ai~-Pd~vi~VmDasi 225 (483)
T KOG0780|consen 162 SYTEADPV--------KIASEGVDRFKKENFDVIIVDTSGRHK--QEASLFEEMKQVSKAIK-PDEIIFVMDASI 225 (483)
T ss_pred cccccchH--------HHHHHHHHHHHhcCCcEEEEeCCCchh--hhHHHHHHHHHHHhhcC-CCeEEEEEeccc
Confidence 0 00001 11122222222 67999999999776 33333444443333333 677999999963
No 329
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.46 E-value=8.3e-07 Score=77.79 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..+-|.||||+-.. ..+... +.. .+++++++|.....+... +..++..+.... -+.|+++|.||+|+
T Consensus 44 ~~l~iwDt~G~e~~-------~~l~~~~~~~---ad~~ilV~D~t~~~S~~~-i~~w~~~i~~~~-~~~piilvgNK~Dl 111 (200)
T smart00176 44 IRFNVWDTAGQEKF-------GGLRDGYYIQ---GQCAIIMFDVTARVTYKN-VPNWHRDLVRVC-ENIPIVLCGNKVDV 111 (200)
T ss_pred EEEEEEECCCchhh-------hhhhHHHhcC---CCEEEEEEECCChHHHHH-HHHHHHHHHHhC-CCCCEEEEEECccc
Confidence 36789999998541 112222 323 357888899864322222 333433332222 46899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
..+. .. . +. .++.... ...++.+||++|+|+.+++..+.+.+..
T Consensus 112 ~~~~--v~---~---~~--------------------~~~~~~~-~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 112 KDRK--VK---A---KS--------------------ITFHRKK-NLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred cccc--CC---H---HH--------------------HHHHHHc-CCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 4321 10 0 00 0111122 3579999999999999999999876643
No 330
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.46 E-value=1.2e-06 Score=80.57 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=28.1
Q ss_pred CeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccch
Q 023298 148 NVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 148 ~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
.++++|++++... ..+.+. .++. .+.. +.|+|+|+||+|++...
T Consensus 115 vh~~ly~i~~~~~~l~~~D~--~~lk---~l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 115 VHACLYFIEPTGHGLKPLDI--EFMK---RLSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred eEEEEEEEeCCCCCCCHHHH--HHHH---HHhc-cCCEEEEEECCCcCCHH
Confidence 4688999987642 333331 1112 2222 68999999999998644
No 331
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.43 E-value=2.5e-06 Score=88.34 Aligned_cols=67 Identities=13% Similarity=0.160 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++++.+|||||++.. ...+...+.. .+++++++|+... ......+... ..+.+.|.|+++||+|
T Consensus 86 ~~~i~liDtPG~~df------~~~~~~~l~~---~D~avlVvda~~g~~~~t~~~~~~------~~~~~~~~iv~iNK~D 150 (731)
T PRK07560 86 EYLINLIDTPGHVDF------GGDVTRAMRA---VDGAIVVVDAVEGVMPQTETVLRQ------ALRERVKPVLFINKVD 150 (731)
T ss_pred cEEEEEEcCCCccCh------HHHHHHHHHh---cCEEEEEEECCCCCCccHHHHHHH------HHHcCCCeEEEEECch
Confidence 457899999998762 2234444543 3678899998754 3223333221 2345789999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
+..
T Consensus 151 ~~~ 153 (731)
T PRK07560 151 RLI 153 (731)
T ss_pred hhc
Confidence 864
No 332
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=4e-06 Score=77.17 Aligned_cols=174 Identities=20% Similarity=0.296 Sum_probs=95.9
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 100 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~ 100 (284)
|-.||-= -|||||+.+++..|+..+. +....|+ .|+.. .++ +.-|+.-|.+= +
T Consensus 15 igtiGHvdHGKTTLtaAit~~la~~~~----------~~~~~y~---~id~a--PeE--k~rGITIntah---v------ 68 (394)
T COG0050 15 VGTIGHVDHGKTTLTAAITTVLAKKGG----------AEAKAYD---QIDNA--PEE--KARGITINTAH---V------ 68 (394)
T ss_pred EEEeccccCchhhHHHHHHHHHHhhcc----------ccccchh---hhccC--chH--hhcCceeccce---e------
Confidence 4467777 9999999999999998763 3334442 12111 000 11122111100 0
Q ss_pred HHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 023298 101 LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 180 (284)
Q Consensus 101 ~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~ 180 (284)
..+ ..+..|-.+||||+. ...+.|+.-...+|...+++---|.....+ .+.+ + ...+.
T Consensus 69 -------eye-t~~rhyahVDcPGHa------DYvKNMItgAaqmDgAILVVsA~dGpmPqT-rEHi--L-----larqv 126 (394)
T COG0050 69 -------EYE-TANRHYAHVDCPGHA------DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHI--L-----LARQV 126 (394)
T ss_pred -------EEe-cCCceEEeccCCChH------HHHHHHhhhHHhcCccEEEEEcCCCCCCcc-hhhh--h-----hhhhc
Confidence 011 116689999999954 344555554434565555444444432222 2221 1 11367
Q ss_pred CCCEEEE-ecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCc----eEEEEeccC------
Q 023298 181 ELPHVNI-LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV----SFMPLDLRK------ 249 (284)
Q Consensus 181 ~~p~IlV-lNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~----~~ipiSa~~------ 249 (284)
+.|.|+| +||+|+++++ ++.+..+. .+.+++.+|+|. .++-=||+.
T Consensus 127 Gvp~ivvflnK~Dmvdd~-ellelVem----------------------EvreLLs~y~f~gd~~Pii~gSal~ale~~~ 183 (394)
T COG0050 127 GVPYIVVFLNKVDMVDDE-ELLELVEM----------------------EVRELLSEYGFPGDDTPIIRGSALKALEGDA 183 (394)
T ss_pred CCcEEEEEEecccccCcH-HHHHHHHH----------------------HHHHHHHHcCCCCCCcceeechhhhhhcCCc
Confidence 8887666 8999999877 66655532 224556677763 233333332
Q ss_pred --cccHHHHHHHHHHhcCC
Q 023298 250 --ESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 250 --~~~l~~Ll~~I~~~l~~ 266 (284)
...+.+|+++++++.|.
T Consensus 184 ~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 184 KWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred chHHHHHHHHHHHHhcCCC
Confidence 23458888888888765
No 333
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.41 E-value=4.9e-06 Score=77.79 Aligned_cols=40 Identities=8% Similarity=0.014 Sum_probs=37.5
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
.+|+.++++|-- |||||+..-||.||.+.|++|++.-.|.
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DT 177 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDT 177 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecch
Confidence 469999999998 9999999999999999999999998875
No 334
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.41 E-value=1.1e-06 Score=73.42 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=57.9
Q ss_pred CCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHH
Q 023298 147 FNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAK 225 (284)
Q Consensus 147 ~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~ 225 (284)
.++++++++|+... .+...++...+.. ...++|.|+|+||+|++.++ ++..++.
T Consensus 8 ~aD~il~VvD~~~p~~~~~~~i~~~l~~----~~~~~p~ilVlNKiDl~~~~-~~~~~~~-------------------- 62 (157)
T cd01858 8 SSDVVIQVLDARDPMGTRCKHVEEYLKK----EKPHKHLIFVLNKCDLVPTW-VTARWVK-------------------- 62 (157)
T ss_pred hCCEEEEEEECCCCccccCHHHHHHHHh----ccCCCCEEEEEEchhcCCHH-HHHHHHH--------------------
Confidence 35789999999864 3334555444331 13358999999999997644 3333331
Q ss_pred HHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 226 LNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 226 l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.+-+.+.+ .++|+||+++.|++.|++.+.+.+.
T Consensus 63 ------~~~~~~~~-~~~~iSa~~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 63 ------ILSKEYPT-IAFHASINNPFGKGSLIQLLRQFSK 95 (157)
T ss_pred ------HHhcCCcE-EEEEeeccccccHHHHHHHHHHHHh
Confidence 11122322 3689999999999999999987653
No 335
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.39 E-value=7.3e-07 Score=83.65 Aligned_cols=100 Identities=20% Similarity=0.360 Sum_probs=60.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHH-HhcCCCeEEEEEecCCCC----CCHHHHHHHHHHHHHHHHhcCCC-EEEE
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFI----TDVTKFISGCMASLSAMVQLELP-HVNI 187 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l-~~~d~~~vil~LiDa~~~----~~~~~~i~~~l~~l~~~~~~~~p-~IlV 187 (284)
+.+||+.||||+.+.- +.+ ..+.-+++.+.|||+... ++-+.||+++ ++.+ +|++
T Consensus 85 KRkFIiADTPGHeQYT----------RNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sL---------LGIrhvvvA 145 (431)
T COG2895 85 KRKFIIADTPGHEQYT----------RNMATGASTADLAILLVDARKGVLEQTRRHSFIASL---------LGIRHVVVA 145 (431)
T ss_pred cceEEEecCCcHHHHh----------hhhhcccccccEEEEEEecchhhHHHhHHHHHHHHH---------hCCcEEEEE
Confidence 6789999999965422 223 222335688999999754 2345555543 3444 4677
Q ss_pred ecCCcccc-chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC--ceEEEEeccCcccHHH
Q 023298 188 LSKMDLVT-NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRY 255 (284)
Q Consensus 188 lNK~Dll~-~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~--~~~ipiSa~~~~~l~~ 255 (284)
+||+||+. ++..++.+. . .|. .+..+.++ ..++|+||..|+|+-.
T Consensus 146 VNKmDLvdy~e~~F~~I~-~---------------dy~-------~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 146 VNKMDLVDYSEEVFEAIV-A---------------DYL-------AFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred EeeecccccCHHHHHHHH-H---------------HHH-------HHHHHcCCCcceEEechhccCCcccc
Confidence 99999986 331222222 1 121 22233333 5899999999999754
No 336
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=2.1e-06 Score=78.23 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=36.8
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFD 62 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~ 62 (284)
+++.-|.| |||||++.|||..|+..|.+|-++|.|--+...|
T Consensus 50 I~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP 92 (300)
T KOG3022|consen 50 ILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIP 92 (300)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCch
Confidence 44556888 9999999999999999999999999998887654
No 337
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=98.38 E-value=8.8e-06 Score=68.51 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=28.6
Q ss_pred EECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 24 VFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 24 viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
|.|.+ +||||++.+|+.+|+++|+||.++ +|.++
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~--kP~~~ 37 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYY--KPVQT 37 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHHCCCcEEEE--Eeeee
Confidence 55664 999999999999999999999995 55554
No 338
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.35 E-value=5.4e-06 Score=72.17 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=100.1
Q ss_pred cCc-eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC---CCCC-ccccccccccHHHHhhhcCcccCchh
Q 023298 17 YAL-VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN---FDYP-VAMDIRELISLEDVMEELGLGPNGGL 90 (284)
Q Consensus 17 ~~~-~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~---~~~~-~~~dir~~i~~~~vm~~~~lgPng~l 90 (284)
.+| ..+-|.||+ |||||+.-.+.+.|... +++.+|--|-.... .-+. +...+.... .|-+-. +
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~--------TG~~CH--~ 78 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIYTKEDADRLRKLPGEPIIGVE--------TGKGCH--L 78 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeechhhHHHHHhCCCCeeEEec--------cCCccC--C
Confidence 455 778899999 99999999999999877 89999988877632 0011 111111110 010000 0
Q ss_pred hhhhHhhhhcHHHHHHHHhhccCCCCEEEEeCCC-CcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-CHHHHHH
Q 023298 91 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPG-QIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFIS 168 (284)
Q Consensus 91 ~~~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg-~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-~~~~~i~ 168 (284)
-..+...++++ |. ..+..-+++||-+-| ..-.++. .|.. ..-++++|..... .|.+-
T Consensus 79 --da~m~~~ai~~-l~---~~~~~~Dll~iEs~GNL~~~~sp---------~L~d----~~~v~VidvteGe~~P~K~-- 137 (202)
T COG0378 79 --DASMNLEAIEE-LV---LDFPDLDLLFIESVGNLVCPFSP---------DLGD----HLRVVVIDVTEGEDIPRKG-- 137 (202)
T ss_pred --cHHHHHHHHHH-Hh---hcCCcCCEEEEecCcceecccCc---------chhh----ceEEEEEECCCCCCCcccC--
Confidence 01122233311 11 111124899999999 2221211 1211 2567788886542 23220
Q ss_pred HHHHHHHHHHhcCCCEEEEecCCccccch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEec
Q 023298 169 GCMASLSAMVQLELPHVNILSKMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDL 247 (284)
Q Consensus 169 ~~l~~l~~~~~~~~p~IlVlNK~Dll~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa 247 (284)
.+-+-+.-++||||.|+.+.- .+++.+. + .+.+--+-..|+..|.
T Consensus 138 --------gP~i~~aDllVInK~DLa~~v~~dlevm~--------~------------------da~~~np~~~ii~~n~ 183 (202)
T COG0378 138 --------GPGIFKADLLVINKTDLAPYVGADLEVMA--------R------------------DAKEVNPEAPIIFTNL 183 (202)
T ss_pred --------CCceeEeeEEEEehHHhHHHhCccHHHHH--------H------------------HHHHhCCCCCEEEEeC
Confidence 011122558999999997511 1122221 1 1111123478999999
Q ss_pred cCcccHHHHHHHHHHh
Q 023298 248 RKESSIRYVLSQIDNC 263 (284)
Q Consensus 248 ~~~~~l~~Ll~~I~~~ 263 (284)
++|+|++.++..+...
T Consensus 184 ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 184 KTGEGLDEWLRFIEPQ 199 (202)
T ss_pred CCCcCHHHHHHHHHhh
Confidence 9999999999888654
No 339
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=98.34 E-value=1e-05 Score=60.47 Aligned_cols=32 Identities=9% Similarity=0.108 Sum_probs=30.2
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
+++.|.+ +||||++.+++.+|++.|++|+++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6788999 9999999999999999999999999
No 340
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.32 E-value=8.6e-06 Score=86.71 Aligned_cols=131 Identities=23% Similarity=0.340 Sum_probs=69.7
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
.+.|+||||+.. |. .+... .....+++++++|+...-.+..+- .+..+...++|+|+|+||+|+..
T Consensus 527 ~i~fiDTPGhe~-F~------~lr~~--g~~~aDivlLVVDa~~Gi~~qT~e-----~I~~lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 527 GLLFIDTPGHEA-FT------SLRKR--GGSLADLAVLVVDINEGFKPQTIE-----AINILRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred cEEEEECCCcHH-HH------HHHHh--hcccCCEEEEEEECcccCCHhHHH-----HHHHHHHcCCCEEEEEECCCCcc
Confidence 389999999532 21 11111 122357899999987543344331 11223456889999999999863
Q ss_pred chhhh---hhhcC---cchHHHHHHhhhcchhHHHHHHHHHH---------HHHhcc-CCceEEEEeccCcccHHHHHHH
Q 023298 196 NKKEI---EDYLN---PESQFLLSELNQHMAPQFAKLNKSLI---------ELVDEY-SMVSFMPLDLRKESSIRYVLSQ 259 (284)
Q Consensus 196 ~~~~l---~~~l~---~~~~~l~~~l~~~~~~~~~~l~~~i~---------~~l~~~-~~~~~ipiSa~~~~~l~~Ll~~ 259 (284)
.. .. ..+.. .+.+....++.. ...++...+. ..++++ +...++|+||.+|+|+++|+..
T Consensus 593 ~~-~~~~~~~~~~~~~~q~~~~~~el~~----~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~ 667 (1049)
T PRK14845 593 GW-NISEDEPFLLNFNEQDQHALTELEI----KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMM 667 (1049)
T ss_pred cc-ccccchhhhhhhhhhHHHHHHHHHH----HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHH
Confidence 21 10 11110 011111111110 0001111111 112343 4578999999999999999998
Q ss_pred HHHhcC
Q 023298 260 IDNCIQ 265 (284)
Q Consensus 260 I~~~l~ 265 (284)
|....+
T Consensus 668 l~~l~~ 673 (1049)
T PRK14845 668 VAGLAQ 673 (1049)
T ss_pred HHHhhH
Confidence 865444
No 341
>PTZ00416 elongation factor 2; Provisional
Probab=98.32 E-value=1.7e-06 Score=90.86 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=43.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++.+.++||||+++. ...+...+. ..+++++++|+... ......++. ...+.++|.|+++||+|
T Consensus 91 ~~~i~liDtPG~~~f------~~~~~~al~---~~D~ailVvda~~g~~~~t~~~~~------~~~~~~~p~iv~iNK~D 155 (836)
T PTZ00416 91 PFLINLIDSPGHVDF------SSEVTAALR---VTDGALVVVDCVEGVCVQTETVLR------QALQERIRPVLFINKVD 155 (836)
T ss_pred ceEEEEEcCCCHHhH------HHHHHHHHh---cCCeEEEEEECCCCcCccHHHHHH------HHHHcCCCEEEEEEChh
Confidence 456899999998761 122333343 35688999999764 333333332 33456789999999999
Q ss_pred cc
Q 023298 193 LV 194 (284)
Q Consensus 193 ll 194 (284)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 86
No 342
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.32 E-value=8.6e-06 Score=71.84 Aligned_cols=133 Identities=16% Similarity=0.248 Sum_probs=76.1
Q ss_pred CCCEEEEeCCCCcccccc-cchHHHHHHHHH-hcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTH-VPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~-~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK 190 (284)
+.++.+|||||+.+.-.. ....+.+.+.+. ...-..+++|+++..+++..+......+.. .+ ...-.-+++|++.
T Consensus 48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~--~FG~~~~k~~ivvfT~ 125 (212)
T PF04548_consen 48 GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQE--IFGEEIWKHTIVVFTH 125 (212)
T ss_dssp TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHH--HHCGGGGGGEEEEEEE
T ss_pred ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHH--HccHHHHhHhhHHhhh
Confidence 457899999998653221 122233444443 233356899999988776544443333221 11 1223468999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEecc------CcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR------KESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~------~~~~l~~Ll~~I~~~l 264 (284)
.|..... .+.++++. .-+..+.++++..+ .+++-++.. +...+.+|+..|++..
T Consensus 126 ~d~~~~~-~~~~~l~~------------------~~~~~l~~li~~c~-~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv 185 (212)
T PF04548_consen 126 ADELEDD-SLEDYLKK------------------ESNEALQELIEKCG-GRYHVFNNKTKDKEKDESQVSELLEKIEEMV 185 (212)
T ss_dssp GGGGTTT-THHHHHHH------------------HHHHHHHHHHHHTT-TCEEECCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccc-cHHHHHhc------------------cCchhHhHHhhhcC-CEEEEEeccccchhhhHHHHHHHHHHHHHHH
Confidence 9887655 45555431 11233456666666 366666665 4567889999998887
Q ss_pred CCCC
Q 023298 265 QWGE 268 (284)
Q Consensus 265 ~~g~ 268 (284)
.+..
T Consensus 186 ~~n~ 189 (212)
T PF04548_consen 186 QENG 189 (212)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6643
No 343
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=4.3e-06 Score=81.09 Aligned_cols=161 Identities=14% Similarity=0.173 Sum_probs=92.5
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHH----HHhhhcCcccCchhh
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLE----DVMEELGLGPNGGLI 91 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~----~vm~~~~lgPng~l~ 91 (284)
.+|+.|.++|-- |||||-..-+|.||.+++.||++.-+||=.+.---...+-+|.+-.+. ++.+ -|+|-.-+.+
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfe-kGYgkd~a~v 454 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFE-KGYGKDAAGV 454 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHh-hhcCCChHHH
Confidence 389999999998 999999999999999999999999999866521000000111110000 0001 1222211111
Q ss_pred hhhHhhhhcHHHHHHHHhhccC--CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHH
Q 023298 92 YCMEHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 169 (284)
Q Consensus 92 ~~~e~~~~~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~ 169 (284)
-+++++... +.+.|+|||.|.+. ...+++..+-+.+ .....+.|+|+-+|...++.-+.+..
T Consensus 455 -------------ak~AI~~a~~~gfDVvLiDTAGR~~--~~~~lm~~l~k~~-~~~~pd~i~~vgealvg~dsv~q~~~ 518 (587)
T KOG0781|consen 455 -------------AKEAIQEARNQGFDVVLIDTAGRMH--NNAPLMTSLAKLI-KVNKPDLILFVGEALVGNDSVDQLKK 518 (587)
T ss_pred -------------HHHHHHHHHhcCCCEEEEecccccc--CChhHHHHHHHHH-hcCCCceEEEehhhhhCcHHHHHHHH
Confidence 122222111 67999999999876 3333333333333 34557889999888655544443433
Q ss_pred HHHHHHHHHhcCCC---EEEEecCCccccch
Q 023298 170 CMASLSAMVQLELP---HVNILSKMDLVTNK 197 (284)
Q Consensus 170 ~l~~l~~~~~~~~p---~IlVlNK~Dll~~~ 197 (284)
.=.++ .....| --++|+|+|.+.++
T Consensus 519 fn~al---~~~~~~r~id~~~ltk~dtv~d~ 546 (587)
T KOG0781|consen 519 FNRAL---ADHSTPRLIDGILLTKFDTVDDK 546 (587)
T ss_pred HHHHH---hcCCCccccceEEEEeccchhhH
Confidence 32222 222222 35789999987643
No 344
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.27 E-value=8.2e-06 Score=74.28 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=48.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.+++|||||+....- ++.++..+ +.++.+.+.+... ++.+..++....+++.|+..|+||.++-
T Consensus 164 ~~~~IIDsaaG~gCp--------Vi~sl~~a---D~ai~VTEPTp~g-----lhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 164 ADLLIIDSAAGTGCP--------VIASLKGA---DLAILVTEPTPFG-----LHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred cceeEEecCCCCCCh--------HHHhhccC---CEEEEEecCCccc-----hhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 489999999976532 44556543 4566666653321 4455566677788999999999999653
Q ss_pred cchhhhhhhc
Q 023298 195 TNKKEIEDYL 204 (284)
Q Consensus 195 ~~~~~l~~~l 204 (284)
.. +++++.
T Consensus 228 ~s--~ie~~~ 235 (284)
T COG1149 228 DS--EIEEYC 235 (284)
T ss_pred ch--HHHHHH
Confidence 32 455554
No 345
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.25 E-value=4.5e-06 Score=70.91 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=53.4
Q ss_pred CeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHH
Q 023298 148 NVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL 226 (284)
Q Consensus 148 ~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l 226 (284)
++++++++|+... ......+... ..++|.++|+||+|+..+. ....+.
T Consensus 20 aD~il~v~D~~~~~~~~~~~i~~~--------~~~k~~ilVlNK~Dl~~~~-~~~~~~---------------------- 68 (171)
T cd01856 20 VDLVIEVRDARIPLSSRNPLLEKI--------LGNKPRIIVLNKADLADPK-KTKKWL---------------------- 68 (171)
T ss_pred CCEEEEEeeccCccCcCChhhHhH--------hcCCCEEEEEehhhcCChH-HHHHHH----------------------
Confidence 5789999999754 2222222211 1368999999999986432 222221
Q ss_pred HHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 227 NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 227 ~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.+... ...++++||+++.|++.|.+.+.+.++
T Consensus 69 -----~~~~~~-~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 69 -----KYFESK-GEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred -----HHHHhc-CCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 111111 256899999999999999999998764
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.22 E-value=5.1e-06 Score=69.41 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=54.4
Q ss_pred eEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHH
Q 023298 149 VCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLN 227 (284)
Q Consensus 149 ~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~ 227 (284)
+++++++|+... .+....+.. ..+...++|.|+|+||+|++.++ ++..|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~-----~~~~~~~~p~IiVlNK~Dl~~~~-~~~~~~~---------------------- 52 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIER-----VLIKEKGKKLILVLNKADLVPKE-VLRKWLA---------------------- 52 (155)
T ss_pred CEEEEEEeccCCccccCHHHHH-----HHHhcCCCCEEEEEechhcCCHH-HHHHHHH----------------------
Confidence 468999999754 222232221 12234679999999999997544 3333321
Q ss_pred HHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 228 KSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 228 ~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.+ ....+..++++||+++.|++.|.+.|.+.+
T Consensus 53 ----~~-~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 53 ----YL-RHSYPTIPFKISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred ----HH-HhhCCceEEEEeccCCcChhhHHHHHHHHh
Confidence 11 122246789999999999999999887653
No 347
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.22 E-value=1e-05 Score=67.34 Aligned_cols=94 Identities=12% Similarity=0.169 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHh
Q 023298 137 NFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSEL 215 (284)
Q Consensus 137 ~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l 215 (284)
++.+++.+ ..+++++++|+... ......+... ....++|.++|+||+|+..+. ....+.
T Consensus 4 ~~~~~i~~--~aD~vl~V~D~~~~~~~~~~~l~~~------~~~~~~p~iiv~NK~Dl~~~~-~~~~~~----------- 63 (156)
T cd01859 4 RLVRRIIK--ESDVVLEVLDARDPELTRSRKLERY------VLELGKKLLIVLNKADLVPKE-VLEKWK----------- 63 (156)
T ss_pred HHHHHHHh--hCCEEEEEeeCCCCcccCCHHHHHH------HHhCCCcEEEEEEhHHhCCHH-HHHHHH-----------
Confidence 35555533 13689999999653 2222223221 124578999999999986432 221110
Q ss_pred hhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 216 NQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 216 ~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
.+.+.. ...++++||+++.|++.|.+.|.+.++..
T Consensus 64 ----------------~~~~~~-~~~~~~iSa~~~~gi~~L~~~l~~~~~~~ 98 (156)
T cd01859 64 ----------------SIKESE-GIPVVYVSAKERLGTKILRRTIKELAKID 98 (156)
T ss_pred ----------------HHHHhC-CCcEEEEEccccccHHHHHHHHHHHHhhc
Confidence 011111 25689999999999999999999998753
No 348
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.22 E-value=2.5e-06 Score=71.38 Aligned_cols=67 Identities=12% Similarity=0.111 Sum_probs=39.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC-H-HHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-V-TKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~-~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
...++||||||.......+. ....+.+. ..++++|++++..... . ..++.. ........+|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~--~~~~~~~~---~~d~vi~V~~~~~~~~~~~~~~l~~------~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHT--EITEEYLP---KADVVIFVVDANQDLTESDMEFLKQ------MLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTS--HHHHHHHS---TTEEEEEEEETTSTGGGHHHHHHHH------HHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhH--HHHHHhhc---cCCEEEEEeccCcccchHHHHHHHH------HhcCCCCeEEEEEcCC
Confidence 45789999999866433222 22233342 3578999999987433 2 222222 2224556799999995
No 349
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=1.1e-05 Score=71.08 Aligned_cols=142 Identities=17% Similarity=0.186 Sum_probs=72.1
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH---HhcCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM---VQLELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~---~~~~~p~IlVlNK~D 192 (284)
..-+||.||+.. .-.++...+......-.+||+||+......-.-++.++.....- ...+.|+.++.||.|
T Consensus 83 ~~~LVD~PGH~r------lR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqD 156 (238)
T KOG0090|consen 83 NVTLVDLPGHSR------LRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQD 156 (238)
T ss_pred ceEEEeCCCcHH------HHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence 357899999543 34556666542122356999999986643333333333322111 355778888899999
Q ss_pred cccc--hhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHH--hccC-------CceEEEEeccCcccHHHHHHHHH
Q 023298 193 LVTN--KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV--DEYS-------MVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 193 ll~~--~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l--~~~~-------~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
+.-. ...+...++.....+.+.-+......+........... .+|. -+.|.+-|++++ +++++.+-|.
T Consensus 157 l~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~ 235 (238)
T KOG0090|consen 157 LFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIR 235 (238)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHH
Confidence 9642 21233333322222211110000000000000000000 1121 257899999988 8888888887
Q ss_pred Hhc
Q 023298 262 NCI 264 (284)
Q Consensus 262 ~~l 264 (284)
+++
T Consensus 236 ~~l 238 (238)
T KOG0090|consen 236 EAL 238 (238)
T ss_pred HhC
Confidence 754
No 350
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=1.8e-05 Score=78.02 Aligned_cols=111 Identities=14% Similarity=0.182 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHH--hcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK--SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~--~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
...+.|.||||+.-. .+|. .+...++++++|-+...-.|... .++.-....+.|+|+++|||
T Consensus 200 G~~iTFLDTPGHaAF-----------~aMRaRGA~vtDIvVLVVAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKi 263 (683)
T KOG1145|consen 200 GKSITFLDTPGHAAF-----------SAMRARGANVTDIVVLVVAADDGVMPQTL-----EAIKHAKSANVPIVVAINKI 263 (683)
T ss_pred CCEEEEecCCcHHHH-----------HHHHhccCccccEEEEEEEccCCccHhHH-----HHHHHHHhcCCCEEEEEecc
Confidence 457899999996531 1132 23556778888866543333332 11223346789999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC-ceEEEEeccCcccHHHHHHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~-~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
|.-.. ..++... +|-.. --..+++|. +.++||||++|+|++.|.+.+.-
T Consensus 264 Dkp~a--~pekv~~--------eL~~~------------gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 264 DKPGA--NPEKVKR--------ELLSQ------------GIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CCCCC--CHHHHHH--------HHHHc------------CccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 96432 2222221 11100 012456655 89999999999999999988763
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.18 E-value=6.9e-06 Score=75.39 Aligned_cols=85 Identities=13% Similarity=0.259 Sum_probs=57.3
Q ss_pred CCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHH
Q 023298 146 NFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFA 224 (284)
Q Consensus 146 d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~ 224 (284)
+.++++++++|+... .+....+...+ .++|+|+|+||+|++.+. ....|.+
T Consensus 20 ~~aDvVl~V~Dar~p~~~~~~~i~~~l--------~~kp~IiVlNK~DL~~~~-~~~~~~~------------------- 71 (276)
T TIGR03596 20 KLVDVVIEVLDARIPLSSRNPMIDEIR--------GNKPRLIVLNKADLADPA-VTKQWLK------------------- 71 (276)
T ss_pred hhCCEEEEEEeCCCCCCCCChhHHHHH--------CCCCEEEEEEccccCCHH-HHHHHHH-------------------
Confidence 335789999999754 33333332221 268999999999986533 3333321
Q ss_pred HHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 225 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 225 ~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
.+...+ ..++++||+++.|+..|.+.+.+.+++.
T Consensus 72 --------~~~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 72 --------YFEEKG-IKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred --------HHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 111212 4689999999999999999999888754
No 352
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.17 E-value=8e-06 Score=76.05 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=90.6
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 100 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~ 100 (284)
|.|+|=. +|||||.+.|.. .+..-+.-++=-|||....-. .||
T Consensus 181 iavVGYTNaGKsTLikaLT~-Aal~p~drLFATLDpT~h~a~----------------------Lps------------- 224 (410)
T KOG0410|consen 181 IAVVGYTNAGKSTLIKALTK-AALYPNDRLFATLDPTLHSAH----------------------LPS------------- 224 (410)
T ss_pred EEEEeecCccHHHHHHHHHh-hhcCccchhheeccchhhhcc----------------------CCC-------------
Confidence 7899999 999999999994 332223334444555443211 143
Q ss_pred HHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhc
Q 023298 101 LDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL 180 (284)
Q Consensus 101 ~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~ 180 (284)
+..+++.||=|++.-..+ .+...|-..|.....++++++++|.+... ........+ ..+...
T Consensus 225 -------------g~~vlltDTvGFisdLP~-~LvaAF~ATLeeVaeadlllHvvDiShP~-ae~q~e~Vl---~vL~~i 286 (410)
T KOG0410|consen 225 -------------GNFVLLTDTVGFISDLPI-QLVAAFQATLEEVAEADLLLHVVDISHPN-AEEQRETVL---HVLNQI 286 (410)
T ss_pred -------------CcEEEEeechhhhhhCcH-HHHHHHHHHHHHHhhcceEEEEeecCCcc-HHHHHHHHH---HHHHhc
Confidence 346789999998875532 22333444444344468999999987442 112233332 234444
Q ss_pred CCC-------EEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccH
Q 023298 181 ELP-------HVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSI 253 (284)
Q Consensus 181 ~~p-------~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l 253 (284)
+.| .|=|=||+|..+.+ .+ .... ..+++|+++|+|+
T Consensus 287 gv~~~pkl~~mieVdnkiD~e~~~------~e------------------------------~E~n-~~v~isaltgdgl 329 (410)
T KOG0410|consen 287 GVPSEPKLQNMIEVDNKIDYEEDE------VE------------------------------EEKN-LDVGISALTGDGL 329 (410)
T ss_pred CCCcHHHHhHHHhhcccccccccc------Cc------------------------------cccC-CccccccccCccH
Confidence 443 34455666653322 10 1111 1689999999999
Q ss_pred HHHHHHHHHhc
Q 023298 254 RYVLSQIDNCI 264 (284)
Q Consensus 254 ~~Ll~~I~~~l 264 (284)
+++++.++...
T Consensus 330 ~el~~a~~~kv 340 (410)
T KOG0410|consen 330 EELLKAEETKV 340 (410)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 353
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.17 E-value=1.2e-05 Score=63.13 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=37.4
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh--cCCCEEEEecCC
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ--LELPHVNILSKM 191 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~--~~~p~IlVlNK~ 191 (284)
.+.+.|++|+.+....+. .+ +.. .+++++++|.. ++..+ +..++..+..+.+ .+.|+++|.||.
T Consensus 51 ~~~~~d~~g~~~~~~~~~---~~---~~~---~d~~ilv~D~s---~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~ 118 (119)
T PF08477_consen 51 SLQFWDFGGQEEFYSQHQ---FF---LKK---ADAVILVYDLS---DPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKS 118 (119)
T ss_dssp EEEEEEESSSHCHHCTSH---HH---HHH---SCEEEEEEECC---GHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-T
T ss_pred EEEEEecCccceeccccc---ch---hhc---CcEEEEEEcCC---ChHHHHHHHHHHHHHHHHHccCCCCCEEEEEecc
Confidence 367889999865332111 11 333 36789999986 33333 2233333333332 459999999999
Q ss_pred c
Q 023298 192 D 192 (284)
Q Consensus 192 D 192 (284)
|
T Consensus 119 D 119 (119)
T PF08477_consen 119 D 119 (119)
T ss_dssp C
T ss_pred C
Confidence 8
No 354
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.16 E-value=9e-06 Score=84.14 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=43.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++++.++||||+... ...+...+.. .+++++++|+... ......+.. ...+.+.|.++|+||+|
T Consensus 85 ~~~i~liDTPG~~~f------~~~~~~al~~---aD~~llVvda~~g~~~~t~~~~~------~~~~~~~p~ivviNKiD 149 (720)
T TIGR00490 85 EYLINLIDTPGHVDF------GGDVTRAMRA---VDGAIVVVCAVEGVMPQTETVLR------QALKENVKPVLFINKVD 149 (720)
T ss_pred ceEEEEEeCCCcccc------HHHHHHHHHh---cCEEEEEEecCCCCCccHHHHHH------HHHHcCCCEEEEEEChh
Confidence 568999999998751 1223444544 4678899998653 222222221 12356789999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
...
T Consensus 150 ~~~ 152 (720)
T TIGR00490 150 RLI 152 (720)
T ss_pred ccc
Confidence 864
No 355
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.14 E-value=3.2e-05 Score=74.21 Aligned_cols=148 Identities=15% Similarity=0.230 Sum_probs=78.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHH--hcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCE--TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 94 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~--~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~ 94 (284)
+++.+.++||. |||||+..-||..+. ...++|.+|-+|-=--. -...+-++.++|. + |= -+++..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG-------A~EQLk~Ya~im~---v-p~-~vv~~~ 269 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG-------AVEQLKTYADIMG---V-PL-EVVYSP 269 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh-------HHHHHHHHHHHhC---C-ce-EEecCH
Confidence 46779999999 999999999999888 56779999999853211 0011112222221 1 11 011222
Q ss_pred HhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q 023298 95 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 174 (284)
Q Consensus 95 e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l 174 (284)
.-|.+++..+.+++.|+|||.|.... ......+|...+... ...-+-+++.+..- ..-+..++
T Consensus 270 --------~el~~ai~~l~~~d~ILVDTaGrs~~--D~~~i~el~~~~~~~-~~i~~~Lvlsat~K---~~dlkei~--- 332 (407)
T COG1419 270 --------KELAEAIEALRDCDVILVDTAGRSQY--DKEKIEELKELIDVS-HSIEVYLVLSATTK---YEDLKEII--- 332 (407)
T ss_pred --------HHHHHHHHHhhcCCEEEEeCCCCCcc--CHHHHHHHHHHHhcc-ccceEEEEEecCcc---hHHHHHHH---
Confidence 12334454444779999999997541 111223333333322 23334445555322 12122221
Q ss_pred HHHHhcCCCEEEEecCCcccc
Q 023298 175 SAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 175 ~~~~~~~~p~IlVlNK~Dll~ 195 (284)
..+...+ .-=++++|.|=..
T Consensus 333 ~~f~~~~-i~~~I~TKlDET~ 352 (407)
T COG1419 333 KQFSLFP-IDGLIFTKLDETT 352 (407)
T ss_pred HHhccCC-cceeEEEcccccC
Confidence 2233333 3356789999643
No 356
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=1.1e-05 Score=79.36 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=72.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
+-.=+|||||+... +....+.+.++ +-++++|||...-.+.. ++++.. ....+...|.|+||+|+-
T Consensus 125 ylLNLIDTPGHvDF------s~EVsRslaac---~G~lLvVDA~qGvqAQT-~anf~l----Afe~~L~iIpVlNKIDlp 190 (650)
T KOG0462|consen 125 YLLNLIDTPGHVDF------SGEVSRSLAAC---DGALLVVDASQGVQAQT-VANFYL----AFEAGLAIIPVLNKIDLP 190 (650)
T ss_pred eEEEeecCCCcccc------cceehehhhhc---CceEEEEEcCcCchHHH-HHHHHH----HHHcCCeEEEeeeccCCC
Confidence 55678999997752 22344556553 45788999975432222 333322 245688999999999985
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
... -+ ....++. ++ .+....+.+.+||++|-|++.++++|.+..|.
T Consensus 191 ~ad--pe--------~V~~q~~---------------~l-F~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 191 SAD--PE--------RVENQLF---------------EL-FDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred CCC--HH--------HHHHHHH---------------HH-hcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 422 11 1111111 11 12334689999999999999999999998875
No 357
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=9.3e-05 Score=76.07 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=75.4
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhh
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 94 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~ 94 (284)
..+.+-+-|+|.= +||||++-+|-.+-....+ .=+.+-++..++| .+ .-.+-|+.=.-+.+.
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k---~G~v~~g~~~~D~------~e------~EqeRGITI~saa~s-- 69 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISK---IGEVHDGAATMDW------ME------QEQERGITITSAATT-- 69 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCC---CccccCCCccCCC------cH------HHHhcCCEEeeeeeE--
Confidence 5677889999999 9999999999887543322 0011111111111 11 001112110000000
Q ss_pred HhhhhcHHHHHHHHhhccC-CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHH
Q 023298 95 EHLEDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMA 172 (284)
Q Consensus 95 e~~~~~~~~~l~~~l~~~~-~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~ 172 (284)
+ ... ++.+-+|||||++.. ....-++|..+ |.++.++|+... ....+.++.
T Consensus 70 --------------~-~~~~~~~iNlIDTPGHVDF------t~EV~rslrvl---DgavvVvdaveGV~~QTEtv~r--- 122 (697)
T COG0480 70 --------------L-FWKGDYRINLIDTPGHVDF------TIEVERSLRVL---DGAVVVVDAVEGVEPQTETVWR--- 122 (697)
T ss_pred --------------E-EEcCceEEEEeCCCCcccc------HHHHHHHHHhh---cceEEEEECCCCeeecHHHHHH---
Confidence 0 011 368999999998862 22344556554 456668888754 333443433
Q ss_pred HHHHHHhcCCCEEEEecCCccccc
Q 023298 173 SLSAMVQLELPHVNILSKMDLVTN 196 (284)
Q Consensus 173 ~l~~~~~~~~p~IlVlNK~Dll~~ 196 (284)
+..+.+.|.++++||+|.+..
T Consensus 123 ---qa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 123 ---QADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred ---HHhhcCCCeEEEEECcccccc
Confidence 234678999999999999754
No 358
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.10 E-value=4.7e-05 Score=71.11 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=50.1
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEE--ecCCCCCCHHHHHHHHHHHHHHH--HhcCCCEEEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYL--LDSQFITDVTKFISGCMASLSAM--VQLELPHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~L--iDa~~~~~~~~~i~~~l~~l~~~--~~~~~p~IlVlN 189 (284)
+.++.+|||||+.+...........++.+....-.++++|+ +|..+....+..+...+ ... ...-.+.|+|++
T Consensus 85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~I---qe~FG~~iw~~~IVVfT 161 (313)
T TIGR00991 85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAI---TDSFGKDIWRKSLVVLT 161 (313)
T ss_pred CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHH---HHHhhhhhhccEEEEEE
Confidence 45789999999876421111111122222111225678888 44444443333222222 211 223468999999
Q ss_pred CCccccc-hhhhhhhcCcchHHHHH
Q 023298 190 KMDLVTN-KKEIEDYLNPESQFLLS 213 (284)
Q Consensus 190 K~Dll~~-~~~l~~~l~~~~~~l~~ 213 (284)
++|.+.. ...++.|+....+.|..
T Consensus 162 h~d~~~pd~~~~e~fv~~~~~~lq~ 186 (313)
T TIGR00991 162 HAQFSPPDGLEYNDFFSKRSEALLR 186 (313)
T ss_pred CCccCCCCCCCHHHHHHhcHHHHHH
Confidence 9998742 22566676544444433
No 359
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=98.08 E-value=7.3e-06 Score=67.98 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=34.2
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceE-EEecCcCCCCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMH-IVNLDPAAENF 61 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~-iVdLDPq~~~~ 61 (284)
++.|+|+. |||||++..|.++|.++|++|. +.+.|++...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~ 44 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEI 44 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCccc
Confidence 48999999 9999999999999999999988 99999966544
No 360
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=2.6e-05 Score=67.84 Aligned_cols=112 Identities=13% Similarity=0.246 Sum_probs=71.9
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..=|-||.|| | +++ .+..+.-+ + +.-|+++.|.... ..| +..|+..+......+.|.++|-||+|+
T Consensus 59 KlQIWDTAGQ-E--RFr----tit~syYR-~-ahGii~vyDiT~~---~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl 126 (205)
T KOG0084|consen 59 KLQIWDTAGQ-E--RFR----TITSSYYR-G-AHGIIFVYDITKQ---ESFNNVKRWIQEIDRYASENVPKLLVGNKCDL 126 (205)
T ss_pred EEEeeecccc-H--HHh----hhhHhhcc-C-CCeEEEEEEcccH---HHhhhHHHHHHHhhhhccCCCCeEEEeecccc
Confidence 4457799998 3 222 12222211 1 2468888898643 333 566777666777778899999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.... ....-. -..+....+...|.+.||+++.|+++.+..+...+.
T Consensus 127 ~~~~-~v~~~~-------------------------a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 127 TEKR-VVSTEE-------------------------AQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELK 172 (205)
T ss_pred Hhhe-ecCHHH-------------------------HHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHH
Confidence 6543 211100 012234455556999999999999999988876643
No 361
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.07 E-value=1.5e-05 Score=83.91 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=43.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++.+-+|||||+... ...+...+.. .+.++++||+... ......++ ......++|.|+++||+|
T Consensus 97 ~~~inliDtPGh~dF------~~e~~~al~~---~D~ailVvda~~Gv~~~t~~~~------~~~~~~~~p~i~~iNK~D 161 (843)
T PLN00116 97 EYLINLIDSPGHVDF------SSEVTAALRI---TDGALVVVDCIEGVCVQTETVL------RQALGERIRPVLTVNKMD 161 (843)
T ss_pred ceEEEEECCCCHHHH------HHHHHHHHhh---cCEEEEEEECCCCCcccHHHHH------HHHHHCCCCEEEEEECCc
Confidence 345689999997652 2223444433 4678899998754 33333232 233467899999999999
Q ss_pred cc
Q 023298 193 LV 194 (284)
Q Consensus 193 ll 194 (284)
..
T Consensus 162 ~~ 163 (843)
T PLN00116 162 RC 163 (843)
T ss_pred cc
Confidence 97
No 362
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=3.8e-05 Score=66.52 Aligned_cols=118 Identities=13% Similarity=0.241 Sum_probs=73.3
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
++.|=||.||-.. +++.+.. ...+ ..++.+.|.. +.+.| ...|+..|.....-+.-+.+|-||+|+
T Consensus 55 kfeIWDTAGQERy---~slapMY---yRgA---~AAivvYDit---~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL 122 (200)
T KOG0092|consen 55 KFEIWDTAGQERY---HSLAPMY---YRGA---NAAIVVYDIT---DEESFEKAKNWVKELQRQASPNIVIALVGNKADL 122 (200)
T ss_pred EEEEEEcCCcccc---cccccce---ecCC---cEEEEEEecc---cHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhh
Confidence 6789999998752 2322211 1222 3456667764 45555 455666554444434445668999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADL 272 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~~ 272 (284)
...+ ++ .+-+ ++...+-...-|+..||++|.|++.|+..|.+.+|..+..+.
T Consensus 123 ~~~R-~V-~~~e-------------------------a~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 123 LERR-EV-EFEE-------------------------AQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred hhcc-cc-cHHH-------------------------HHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcccccc
Confidence 7633 22 1110 011111233678899999999999999999999999887765
No 363
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=3.3e-05 Score=76.53 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=61.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-----CHHHHHHHHHHHHHHHHhcCC-CEEEE
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-----DVTKFISGCMASLSAMVQLEL-PHVNI 187 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-----~~~~~i~~~l~~l~~~~~~~~-p~IlV 187 (284)
.+.++++|+|| |..|. ..| +..+...++.+++||++.-. ++........ ..+..+++ ..|++
T Consensus 254 ~~~~tliDaPG-hkdFi-----~nm---i~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha---~llr~Lgi~qliva 321 (603)
T KOG0458|consen 254 SKIVTLIDAPG-HKDFI-----PNM---ISGASQADVAVLVVDASTGEFESGFDPGGQTREHA---LLLRSLGISQLIVA 321 (603)
T ss_pred ceeEEEecCCC-ccccc-----hhh---hccccccceEEEEEECCcchhhhccCCCCchHHHH---HHHHHcCcceEEEE
Confidence 56799999999 55443 222 22222346788899997421 1211111111 11123444 45778
Q ss_pred ecCCcccc-chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHH-hccCC----ceEEEEeccCcccHHHH
Q 023298 188 LSKMDLVT-NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV-DEYSM----VSFMPLDLRKESSIRYV 256 (284)
Q Consensus 188 lNK~Dll~-~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l-~~~~~----~~~ipiSa~~~~~l~~L 256 (284)
+||.|+++ .+..++++. ..+..++ +..+| ++|+|+|+..|+|+...
T Consensus 322 iNKmD~V~Wsq~RF~eIk-----------------------~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 322 INKMDLVSWSQDRFEEIK-----------------------NKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred eecccccCccHHHHHHHH-----------------------HHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99999985 332333332 2233444 44555 57999999999998764
No 364
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.04 E-value=0.0002 Score=65.59 Aligned_cols=132 Identities=10% Similarity=0.145 Sum_probs=78.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHH-HHHHHhcCCCeEEEEEecCCCC--CCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNF-VDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l-~~~l~~~d~~~vil~LiDa~~~--~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
....++-||||.=+.-.......++ .+.+.+. +++++++|+..- ..+..|+..++. ...++|+++|+|.
T Consensus 86 ~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~---DLvL~l~~~~draL~~d~~f~~dVi~-----~~~~~~~i~~VtQ 157 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKL---DLVLWLIKADDRALGTDEDFLRDVII-----LGLDKRVLFVVTQ 157 (296)
T ss_pred ccceEEecCCCcccchhhhHHHHHHHHHHhhhc---cEEEEeccCCCccccCCHHHHHHHHH-----hccCceeEEEEeh
Confidence 4467999999977644444333333 4455554 578889998743 455666655533 2455899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHH-HHHHHHHHHHhccCC-ceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFA-KLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~-~l~~~i~~~l~~~~~-~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|...+- .+|-. .. ....+..+ -+.++.+.+.+.+.. ..++.+|...+-|++.|+..+.+++|
T Consensus 158 ~D~a~p~---~~W~~---~~------~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 158 ADRAEPG---REWDS---AG------HQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hhhhccc---ccccc---cc------CCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 9986432 11110 00 00000111 111222333333322 35777888999999999999999998
No 365
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.04 E-value=3.1e-05 Score=75.66 Aligned_cols=112 Identities=13% Similarity=0.243 Sum_probs=63.5
Q ss_pred CEEEEeCCCCccc-ccccchHHHH-HHHHHhcCCCeEEEEEecCCCC--CCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 116 DYLVFDCPGQIEL-FTHVPVLRNF-VDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 116 ~~viiDtPg~~e~-~~~~~~~~~l-~~~l~~~d~~~vil~LiDa~~~--~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
.+-+|||||+..- ...+...+.. +.+|. -..-+|+|+.|-+.. .+....+. ++.++.- +-.++|.|+|+||+
T Consensus 216 rwQViDTPGILD~plEdrN~IEmqsITALA--HLraaVLYfmDLSe~CGySva~Qvk-LfhsIKp-LFaNK~~IlvlNK~ 291 (620)
T KOG1490|consen 216 RWQVIDTPGILDRPEEDRNIIEMQIITALA--HLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKP-LFANKVTILVLNKI 291 (620)
T ss_pred eeeecCCccccCcchhhhhHHHHHHHHHHH--HhhhhheeeeechhhhCCCHHHHHH-HHHHhHH-HhcCCceEEEeecc
Confidence 4688999997642 1111212111 12221 123468999998742 55555432 2222222 23578999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRY 255 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~ 255 (284)
|.+..+ ++.+-. .++.+-+.+-+.+.++--|..+.+|+..
T Consensus 292 D~m~~e-dL~~~~-----------------------~~ll~~~~~~~~v~v~~tS~~~eegVm~ 331 (620)
T KOG1490|consen 292 DAMRPE-DLDQKN-----------------------QELLQTIIDDGNVKVVQTSCVQEEGVMD 331 (620)
T ss_pred cccCcc-ccCHHH-----------------------HHHHHHHHhccCceEEEecccchhceee
Confidence 998765 443221 1223333455567788888888888765
No 366
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.03 E-value=7e-05 Score=65.59 Aligned_cols=110 Identities=16% Similarity=0.240 Sum_probs=60.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlNK 190 (284)
..+-|.||+|+.+.- .|... +...+ ..+++|=++ +...| +..+..-+..... ...|+++|-||
T Consensus 51 ~~l~ilDt~g~~~~~-------~~~~~~~~~~~-gF~lVysit-----d~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK 117 (196)
T KOG0395|consen 51 CMLEILDTAGQEEFS-------AMRDLYIRNGD-GFLLVYSIT-----DRSSFEEAKQLREQILRVKGRDDVPIILVGNK 117 (196)
T ss_pred EEEEEEcCCCcccCh-------HHHHHhhccCc-EEEEEEECC-----CHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEc
Confidence 456699999966522 12222 32222 345555544 34444 2222222212222 35699999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+...+ ....- +. ..+...++ ..|+..||+...++++++..+....
T Consensus 118 ~Dl~~~R-~V~~e----------eg---------------~~la~~~~-~~f~E~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 118 CDLERER-QVSEE----------EG---------------KALARSWG-CAFIETSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred ccchhcc-ccCHH----------HH---------------HHHHHhcC-CcEEEeeccCCcCHHHHHHHHHHHH
Confidence 9996532 11100 00 11123343 4499999999999999998877643
No 367
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.03 E-value=0.00022 Score=60.55 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=63.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.+++.+-|-.||.+.-+. --+.+.+ .+.++|++|++...+-.+-...+-..+.--...++|.+++.||.|+
T Consensus 59 ~~~L~iwDvGGq~~lr~~------W~nYfes---tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl 129 (185)
T KOG0073|consen 59 GYTLNIWDVGGQKTLRSY------WKNYFES---TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDL 129 (185)
T ss_pred ceEEEEEEcCCcchhHHH------HHHhhhc---cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcC
Confidence 668899999998762111 1233433 3579999998532222221111111111123368999999999998
Q ss_pred ccch--hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCc----ccHHHHHHHHHH
Q 023298 194 VTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE----SSIRYVLSQIDN 262 (284)
Q Consensus 194 l~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~----~~l~~Ll~~I~~ 262 (284)
...- .++...++ +.++... .-.+++..|+.+| +|++.|...+.+
T Consensus 130 ~~~l~~~~i~~~~~------------------------L~~l~ks-~~~~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 130 PGALSLEEISKALD------------------------LEELAKS-HHWRLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccCHHHHHHhhC------------------------HHHhccc-cCceEEEEeccccccHHHHHHHHHHHHHH
Confidence 5311 12222221 1222221 1268999999999 566666665544
No 368
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.02 E-value=1.3e-05 Score=73.72 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=30.1
Q ss_pred CCCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQ 158 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~ 158 (284)
..++.++|+||...... ....+++++.+++. .++++++||+.
T Consensus 61 ~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~---~D~li~VV~~f 103 (274)
T cd01900 61 PATIEFVDIAGLVKGASKGEGLGNKFLSHIRE---VDAIAHVVRCF 103 (274)
T ss_pred eeEEEEEECCCcCCCCchhhHHHHHHHHHHHh---CCEEEEEEeCc
Confidence 34799999999886542 23455667777765 46899999874
No 369
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.01 E-value=0.00011 Score=69.39 Aligned_cols=121 Identities=15% Similarity=0.239 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCcccccccch----HHHH----HHHHH---h--------cCCCeEEEEEecCCC-CCCHHHHHHHHHHH
Q 023298 114 DDDYLVFDCPGQIELFTHVPV----LRNF----VDHLK---S--------RNFNVCAVYLLDSQF-ITDVTKFISGCMAS 173 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~----~~~l----~~~l~---~--------~d~~~vil~LiDa~~-~~~~~~~i~~~l~~ 173 (284)
.-.+.+|||||.-.......+ ...+ -..|. . -....+|+|++.+.. ..++-+.
T Consensus 81 ~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DI------- 153 (373)
T COG5019 81 HLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDI------- 153 (373)
T ss_pred EEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHH-------
Confidence 346899999997655433322 2222 11121 0 123468999997653 3455442
Q ss_pred HHHHHh--cCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcc
Q 023298 174 LSAMVQ--LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES 251 (284)
Q Consensus 174 l~~~~~--~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~ 251 (284)
..|.+ -....|.||.|+|.+... ++..+.+ .|.+.++.++..-|.|.+..+.+
T Consensus 154 -e~Mk~ls~~vNlIPVI~KaD~lT~~-El~~~K~-----------------------~I~~~i~~~nI~vf~pyd~e~~~ 208 (373)
T COG5019 154 -EAMKRLSKRVNLIPVIAKADTLTDD-ELAEFKE-----------------------RIREDLEQYNIPVFDPYDPEDDE 208 (373)
T ss_pred -HHHHHHhcccCeeeeeeccccCCHH-HHHHHHH-----------------------HHHHHHHHhCCceeCCCCccccc
Confidence 12222 246789999999998766 6665542 33455566665444476555432
Q ss_pred -cHHHHHHHHHHhcCC
Q 023298 252 -SIRYVLSQIDNCIQW 266 (284)
Q Consensus 252 -~l~~Ll~~I~~~l~~ 266 (284)
...+.-+.+...+|+
T Consensus 209 ~e~~e~~~~l~~~~PF 224 (373)
T COG5019 209 DESLEENQDLRSLIPF 224 (373)
T ss_pred hhhHHHHHHHhhcCCe
Confidence 445556666666665
No 370
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.00 E-value=1.9e-05 Score=72.97 Aligned_cols=83 Identities=14% Similarity=0.294 Sum_probs=55.6
Q ss_pred CeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHH
Q 023298 148 NVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL 226 (284)
Q Consensus 148 ~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l 226 (284)
++++++++|+... .+....+... .. ++|.++|+||+|+.... ....+.+
T Consensus 25 aDvIL~VvDar~p~~~~~~~l~~~-------~~-~kp~iiVlNK~DL~~~~-~~~~~~~--------------------- 74 (287)
T PRK09563 25 VDVVIEVLDARIPLSSENPMIDKI-------IG-NKPRLLILNKSDLADPE-VTKKWIE--------------------- 74 (287)
T ss_pred CCEEEEEEECCCCCCCCChhHHHH-------hC-CCCEEEEEEchhcCCHH-HHHHHHH---------------------
Confidence 5789999999754 3222323221 12 78999999999986533 2333321
Q ss_pred HHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 227 NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 227 ~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
.++..+ ..++++|+.++.|+..|.+.+.+.+++.
T Consensus 75 ------~~~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 75 ------YFEEQG-IKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred ------HHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 111112 4689999999999999999998887653
No 371
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=6.7e-05 Score=65.82 Aligned_cols=112 Identities=13% Similarity=0.225 Sum_probs=69.5
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..=+.||.||-. ...+.++ ...+ ..++.++|.....+-.. +..|+..+......+.|.++|-||+|+.
T Consensus 62 ~lQiWDtaGQer-------f~ti~~sYyrgA---~gi~LvyDitne~Sfen-i~~W~~~I~e~a~~~v~~~LvGNK~D~~ 130 (207)
T KOG0078|consen 62 KLQIWDTAGQER-------FRTITTAYYRGA---MGILLVYDITNEKSFEN-IRNWIKNIDEHASDDVVKILVGNKCDLE 130 (207)
T ss_pred EEEEEEcccchh-------HHHHHHHHHhhc---CeeEEEEEccchHHHHH-HHHHHHHHHhhCCCCCcEEEeecccccc
Confidence 346789999864 2223333 3332 34666777653322222 4557666666666689999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.++ .+..- .- ..+..+++ ..|+..||++|.|+++.+..+.+.+.
T Consensus 131 ~~R-~V~~e------------------~g-------e~lA~e~G-~~F~EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 131 EKR-QVSKE------------------RG-------EALAREYG-IKFFETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred ccc-cccHH------------------HH-------HHHHHHhC-CeEEEccccCCCCHHHHHHHHHHHHH
Confidence 533 22110 00 12224454 89999999999999998877765544
No 372
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.98 E-value=1.6e-05 Score=67.28 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=37.2
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
++++++++|.+ |||||++..|...|...|+++.++|-|--...
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 56789999999 99999999999999999999999998865543
No 373
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.98 E-value=5.1e-05 Score=68.19 Aligned_cols=132 Identities=15% Similarity=0.222 Sum_probs=69.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~--~~~~p~IlVlNK~D 192 (284)
-.+-+.|||||...+...- ....-.-++. ..++||++|+.... ..+-+..+-.++..+. +-+..+.+.+.|+|
T Consensus 48 ~~l~iwD~pGq~~~~~~~~-~~~~~~if~~---v~~LIyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D 122 (232)
T PF04670_consen 48 LPLNIWDCPGQDDFMENYF-NSQREEIFSN---VGVLIYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMD 122 (232)
T ss_dssp CEEEEEEE-SSCSTTHTTH-TCCHHHHHCT---ESEEEEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CC
T ss_pred cEEEEEEcCCccccccccc-cccHHHHHhc---cCEEEEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecc
Confidence 3678999999987543210 0000111333 35899999998432 2222333323333333 34677888899999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC--CceEEEEeccCcccHHHHHHHHHHhcCCCCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQWGEDA 270 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~--~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~ 270 (284)
++.++ .-.+. ++...+.+.+.+.+.+ -..++.-|+-+..=.+..=..+.+.+|.-+..
T Consensus 123 ~l~~~-~r~~~-------------------~~~~~~~i~~~~~~~~~~~~~~~~TSI~D~Sly~A~S~Ivq~LiP~~~~l 182 (232)
T PF04670_consen 123 LLSED-EREEI-------------------FRDIQQRIRDELEDLGIEDITFFLTSIWDESLYEAWSKIVQKLIPNLSTL 182 (232)
T ss_dssp CS-HH-HHHHH-------------------HHHHHHHHHHHHHHTT-TSEEEEEE-TTSTHHHHHHHHHHHTTSTTHCCC
T ss_pred cCCHH-HHHHH-------------------HHHHHHHHHHHhhhccccceEEEeccCcCcHHHHHHHHHHHHHcccHHHH
Confidence 98644 11111 1223334445555554 37899999999654455555566667766665
Q ss_pred C
Q 023298 271 D 271 (284)
Q Consensus 271 ~ 271 (284)
|
T Consensus 183 e 183 (232)
T PF04670_consen 183 E 183 (232)
T ss_dssp C
T ss_pred H
Confidence 5
No 374
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.97 E-value=5e-05 Score=70.12 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=30.7
Q ss_pred CeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhc
Q 023298 148 NVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYL 204 (284)
Q Consensus 148 ~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l 204 (284)
..+|+|++++... .++.+.- .++ . +....++|.||.|+|.+..+ ++..+.
T Consensus 114 VH~cLYfI~pt~~~L~~~Di~--~mk---~-Ls~~vNvIPvIaKaD~lt~~-el~~~k 164 (281)
T PF00735_consen 114 VHACLYFIPPTGHGLKPLDIE--FMK---R-LSKRVNVIPVIAKADTLTPE-ELQAFK 164 (281)
T ss_dssp EEEEEEEE-TTSSSS-HHHHH--HHH---H-HTTTSEEEEEESTGGGS-HH-HHHHHH
T ss_pred cceEEEEEcCCCccchHHHHH--HHH---H-hcccccEEeEEecccccCHH-HHHHHH
Confidence 4789999997643 4555521 111 1 23357899999999999866 665554
No 375
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.96 E-value=2.3e-05 Score=74.69 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQ 158 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~ 158 (284)
..++.++||||.++... ....+++++++++. .++++|+||+.
T Consensus 65 ~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~---aD~li~VVd~f 107 (364)
T PRK09601 65 PATIEFVDIAGLVKGASKGEGLGNQFLANIRE---VDAIVHVVRCF 107 (364)
T ss_pred CceEEEEECCCCCCCCChHHHHHHHHHHHHHh---CCEEEEEEeCC
Confidence 35799999999886432 22455667777755 46899999984
No 376
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.95 E-value=6.1e-05 Score=64.83 Aligned_cols=89 Identities=9% Similarity=0.072 Sum_probs=54.4
Q ss_pred CeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHH
Q 023298 148 NVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL 226 (284)
Q Consensus 148 ~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l 226 (284)
.+++++++|+.... +....+. ....++|+++|+||+|+..+. ....... . +
T Consensus 35 ad~il~VvD~~~~~~~~~~~l~--------~~~~~~~~ilV~NK~Dl~~~~-~~~~~~~----~---------------~ 86 (190)
T cd01855 35 KALVVHVVDIFDFPGSLIPRLR--------LFGGNNPVILVGNKIDLLPKD-KNLVRIK----N---------------W 86 (190)
T ss_pred CcEEEEEEECccCCCccchhHH--------HhcCCCcEEEEEEchhcCCCC-CCHHHHH----H---------------H
Confidence 57899999997542 1112121 113468999999999997533 1111110 0 0
Q ss_pred HHHHHHHHhc--cCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 227 NKSLIELVDE--YSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 227 ~~~i~~~l~~--~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
..+ ..... +....++++||++|.|+++|++.|.+.++.
T Consensus 87 ~~~--~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~ 126 (190)
T cd01855 87 LRA--KAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAKK 126 (190)
T ss_pred HHH--HHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 000 00011 223479999999999999999999998764
No 377
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.94 E-value=3.4e-05 Score=75.10 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=71.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.|.+=+|||||+.... ....++|.++. -++++|||+-.-+ ...++++-.+ ...+.-.|.|+||+|+
T Consensus 75 ~Y~lnlIDTPGHVDFs------YEVSRSLAACE---GalLvVDAsQGve-AQTlAN~YlA----le~~LeIiPViNKIDL 140 (603)
T COG0481 75 TYVLNLIDTPGHVDFS------YEVSRSLAACE---GALLVVDASQGVE-AQTLANVYLA----LENNLEIIPVLNKIDL 140 (603)
T ss_pred EEEEEEcCCCCccceE------EEehhhHhhCC---CcEEEEECccchH-HHHHHHHHHH----HHcCcEEEEeeecccC
Confidence 3566789999988631 12345576653 3567999964322 2224444332 3568899999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC--ceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~--~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
-... .+... . ++-+-.|. ...+-+||++|.|+++++++|.+.+|.
T Consensus 141 P~Ad--pervk--------~------------------eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 141 PAAD--PERVK--------Q------------------EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred CCCC--HHHHH--------H------------------HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 5422 22211 1 11122333 568899999999999999999999876
No 378
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=6.8e-05 Score=65.28 Aligned_cols=116 Identities=13% Similarity=0.159 Sum_probs=70.1
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC---CCHHHHHHHHHHHHHHHHhc-CCCEEEEecCC
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI---TDVTKFISGCMASLSAMVQL-ELPHVNILSKM 191 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~---~~~~~~i~~~l~~l~~~~~~-~~p~IlVlNK~ 191 (284)
..=+-||.||-. ++. |+...-+ + +.+++.+.|.... .+...++.... .-... +.-+++|-||.
T Consensus 72 rLQlWDTAGQER---Frs----lipsY~R-d-s~vaviVyDit~~~Sfe~t~kWi~dv~----~e~gs~~viI~LVGnKt 138 (221)
T KOG0094|consen 72 RLQLWDTAGQER---FRS----LIPSYIR-D-SSVAVIVYDITDRNSFENTSKWIEDVR----RERGSDDVIIFLVGNKT 138 (221)
T ss_pred EEEEEecccHHH---Hhh----hhhhhcc-C-CeEEEEEEeccccchHHHHHHHHHHHH----hccCCCceEEEEEcccc
Confidence 456779999753 222 3332211 1 3466777777543 23344443332 22222 24567889999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDAD 271 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~ 271 (284)
||+++. +...- ++..+. .+++ ..|+..||+.|.|+..|+..|...+|+-+..+
T Consensus 139 DL~dkr-qvs~e--------------Eg~~kA-----------kel~-a~f~etsak~g~NVk~lFrrIaa~l~~~~~~~ 191 (221)
T KOG0094|consen 139 DLSDKR-QVSIE--------------EGERKA-----------KELN-AEFIETSAKAGENVKQLFRRIAAALPGMEVLE 191 (221)
T ss_pred cccchh-hhhHH--------------HHHHHH-----------HHhC-cEEEEecccCCCCHHHHHHHHHHhccCccccc
Confidence 998765 32110 011111 2233 58999999999999999999999999987765
No 379
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=97.93 E-value=0.00032 Score=61.80 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=30.8
Q ss_pred EEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 22 KCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 22 ~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
++|.|++ +|||+.+..|+.+|.++|++|.+ .-|.++
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~--~KPv~~ 39 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAG--YKPVQS 39 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEE--EeeEec
Confidence 6788887 99999999999999999999877 455544
No 380
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.91 E-value=2e-05 Score=67.58 Aligned_cols=146 Identities=18% Similarity=0.259 Sum_probs=76.7
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCc----ccCchhhhhh-
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGL----GPNGGLIYCM- 94 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~l----gPng~l~~~~- 94 (284)
+.+|.|.- |||||+..++.. ....|.|+.+|=.|-+... +|-+ .+++.+. ..||- +.|.
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~------iD~~-------~l~~~~~~v~~l~~gc-icc~~ 66 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVN------IDAE-------LLQEDGVPVVELNNGC-ICCTL 66 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTH------HHHH-------HHHTTT-EEEEECTTT-ESS-T
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEccccccc------cchh-------hhcccceEEEEecCCC-ccccc
Confidence 37889998 999999999998 6678999999977766532 1111 0111110 02322 2221
Q ss_pred -HhhhhcHHHHHHHHhhccC--CCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCHHHHHHHH
Q 023298 95 -EHLEDNLDDWLAEELDNYL--DDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGC 170 (284)
Q Consensus 95 -e~~~~~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~~~i~~~ 170 (284)
+-+...+ . ++.... +.+++||=|.|....... .. ....+. ... ...++.++|+..+..... +...
T Consensus 67 ~~~~~~~l----~-~l~~~~~~~~d~IiIE~sG~a~p~~l---~~-~~~~~~~~~~-~~~iI~vVDa~~~~~~~~-~~~~ 135 (178)
T PF02492_consen 67 RDDLVEAL----R-RLLREYEERPDRIIIETSGLADPAPL---IL-QDPPLKEDFR-LDSIITVVDATNFDELEN-IPEL 135 (178)
T ss_dssp TS-HHHHH----H-HHCCCCHGC-SEEEEEEECSSGGGGH---HH-HSHHHHHHES-ESEEEEEEEGTTHGGHTT-HCHH
T ss_pred HHHHHHHH----H-HHHHhcCCCcCEEEECCccccccchh---hh-cccccccccc-ccceeEEecccccccccc-chhh
Confidence 1122222 2 222211 458999999996654322 00 012232 122 246888999976632221 1111
Q ss_pred HHHHHHHHhcCCCEEEEecCCccccch
Q 023298 171 MASLSAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 171 l~~l~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
+ ..+...--++|+||+|+++.+
T Consensus 136 ~-----~~Qi~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 136 L-----REQIAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp H-----HHHHCT-SEEEEE-GGGHHHH
T ss_pred h-----hhcchhcCEEEEeccccCChh
Confidence 1 123445679999999998754
No 381
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.90 E-value=0.00016 Score=69.96 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=24.6
Q ss_pred cccccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 13 MSWLYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 13 ~~~~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
.+.-.|--.+-|+||- +|||||.++|...+
T Consensus 11 a~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~ 41 (492)
T TIGR02836 11 AERTQGDIYIGVVGPVRTGKSTFIKKFMELL 41 (492)
T ss_pred HHHhCCcEEEEEEcCCCCChHHHHHHHHhhh
Confidence 3444566778999999 99999999999953
No 382
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00013 Score=70.97 Aligned_cols=45 Identities=9% Similarity=0.075 Sum_probs=34.9
Q ss_pred ccccCceEEEEECCC-CcHHHHHHHHHHHHHh-c-CCceEEEecCcCC
Q 023298 14 SWLYALVIKCVFSPP-PNQSTYCSSLYRHCET-V-RRTMHIVNLDPAA 58 (284)
Q Consensus 14 ~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~-~-g~~v~iVdLDPq~ 58 (284)
....+..++.++||. |||||++..|+..+.. . +.++.++-.|...
T Consensus 186 ~~~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 186 EIIEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred cccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 344667789999999 9999999999986543 3 3678888877743
No 383
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=97.88 E-value=3.8e-05 Score=69.39 Aligned_cols=41 Identities=24% Similarity=0.186 Sum_probs=38.3
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
+| ++|=|.| |||||.+..||..+++.+.+|++|-.||+-+.
T Consensus 20 Kw-ifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNl 61 (323)
T KOG2825|consen 20 KW-IFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNL 61 (323)
T ss_pred eE-EEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccch
Confidence 45 8899999 99999999999999999999999999999984
No 384
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=0.0003 Score=59.81 Aligned_cols=31 Identities=6% Similarity=-0.032 Sum_probs=27.8
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEE
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHI 51 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~i 51 (284)
.++|.|+| |||||+|..+++.|...|++|--
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG 38 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGG 38 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeee
Confidence 38999999 99999999999999999887643
No 385
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.83 E-value=4.8e-05 Score=65.45 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=38.6
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
.++.++++.|.+ |||||++..|.+.|..+|+++.++|=|---.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 356789999999 9999999999999999999999999886555
No 386
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00015 Score=67.72 Aligned_cols=117 Identities=16% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCC-CCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~-~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+..-|+|+||+-- |+.. |..+..-+-.+++|.+.. +-+|... ..|.++..+ . -+.+|.|=||+|
T Consensus 86 R~VSfVDaPGHe~----------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~--EHl~AleIi-g-ik~iiIvQNKID 151 (415)
T COG5257 86 RRVSFVDAPGHET----------LMATMLSGAALMDGALLVIAANEPCPQPQTR--EHLMALEII-G-IKNIIIVQNKID 151 (415)
T ss_pred EEEEEeeCCchHH----------HHHHHhcchhhhcceEEEEecCCCCCCCchH--HHHHHHhhh-c-cceEEEEecccc
Confidence 3578999999432 2222 221112245667787763 3333221 222222222 1 146788899999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHHhcCCCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQWGED 269 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d 269 (284)
+++++..++.+. .|.++++-. ....++|+||..+.|++.|++.|.+.+|.-+-
T Consensus 152 lV~~E~AlE~y~------------------------qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 152 LVSRERALENYE------------------------QIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred eecHHHHHHHHH------------------------HHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 998763444332 223333322 23579999999999999999999999986443
No 387
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.79 E-value=0.00036 Score=67.93 Aligned_cols=127 Identities=16% Similarity=0.208 Sum_probs=73.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++.+-|+||||+.. +-...+++ |+- .+-+++||||...- ....|+. ...+..+++-|+|+||+|
T Consensus 67 ~~~INIvDTPGHAD---FGGEVERv---l~M---VDgvlLlVDA~EGpMPQTrFVl------kKAl~~gL~PIVVvNKiD 131 (603)
T COG1217 67 GTRINIVDTPGHAD---FGGEVERV---LSM---VDGVLLLVDASEGPMPQTRFVL------KKALALGLKPIVVINKID 131 (603)
T ss_pred CeEEEEecCCCcCC---ccchhhhh---hhh---cceEEEEEEcccCCCCchhhhH------HHHHHcCCCcEEEEeCCC
Confidence 56789999999764 22222333 322 36788999998653 4456653 234467899999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCc----------ccHHHHHHHHHH
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE----------SSIRYVLSQIDN 262 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~----------~~l~~Ll~~I~~ 262 (284)
.-... -.+... ..-+|+.++.- --++.. ..++.-|+.+| +++..|++.|.+
T Consensus 132 rp~Ar--p~~Vvd-~vfDLf~~L~A---------------~deQLd-FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~ 192 (603)
T COG1217 132 RPDAR--PDEVVD-EVFDLFVELGA---------------TDEQLD-FPIVYASARNGTASLDPEDEADDMAPLFETILD 192 (603)
T ss_pred CCCCC--HHHHHH-HHHHHHHHhCC---------------ChhhCC-CcEEEeeccCceeccCccccccchhHHHHHHHH
Confidence 85432 222221 01122222211 001111 45677777665 468899999999
Q ss_pred hcCCCCCCCCCCC
Q 023298 263 CIQWGEDADLKIK 275 (284)
Q Consensus 263 ~l~~g~d~~~~~~ 275 (284)
..|.-. .++++|
T Consensus 193 hvp~P~-~~~d~P 204 (603)
T COG1217 193 HVPAPK-GDLDEP 204 (603)
T ss_pred hCCCCC-CCCCCC
Confidence 987633 444433
No 388
>PRK12289 GTPase RsgA; Reviewed
Probab=97.79 E-value=0.00011 Score=69.95 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=53.5
Q ss_pred CeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHH
Q 023298 148 NVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL 226 (284)
Q Consensus 148 ~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l 226 (284)
.+++++++|+.... ++ ..+..++. .....++|.|+|+||+|++... +...+.
T Consensus 90 vD~vLlV~d~~~p~~~~-~~LdR~L~---~a~~~~ip~ILVlNK~DLv~~~-~~~~~~---------------------- 142 (352)
T PRK12289 90 ADQILLVFALAEPPLDP-WQLSRFLV---KAESTGLEIVLCLNKADLVSPT-EQQQWQ---------------------- 142 (352)
T ss_pred CCEEEEEEECCCCCCCH-HHHHHHHH---HHHHCCCCEEEEEEchhcCChH-HHHHHH----------------------
Confidence 46788899986432 22 12333322 1234689999999999997544 333332
Q ss_pred HHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 227 NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 227 ~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
+.+...++ .++++||+++.|+++|++.+..
T Consensus 143 -----~~~~~~g~-~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 143 -----DRLQQWGY-QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred -----HHHHhcCC-eEEEEEcCCCCCHHHHhhhhcc
Confidence 11233444 7899999999999999988764
No 389
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.77 E-value=0.00012 Score=60.07 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccch
Q 023298 138 FVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 138 l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
+.++++. .+++++++|+... .+.+..+..++.. . ..++|+++|+||+|+..++
T Consensus 5 ~~~~i~~---aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~ 58 (141)
T cd01857 5 LWRVVER---SDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEE 58 (141)
T ss_pred HHHHHhh---CCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHH
Confidence 3444544 4689999999754 3333344443321 1 1378999999999997543
No 390
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.77 E-value=0.00025 Score=64.39 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=21.3
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHH
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYR 40 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~ 40 (284)
-...+..|+|+|.+ |||||+...|..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg 53 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFG 53 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 34455679999999 999999988775
No 391
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.76 E-value=4.3e-05 Score=63.75 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=34.5
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
++++|++ |||||++..|+.++...|.++..+|-|+...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 7899999 9999999999999998898999999887664
No 392
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.00016 Score=68.63 Aligned_cols=161 Identities=17% Similarity=0.186 Sum_probs=82.2
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhh--hcCcccCchhh
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVME--ELGLGPNGGLI 91 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~--~~~lgPng~l~ 91 (284)
-|..+..|+++|+= .||||+...|.+ ..+ | +-.++.+|..|- ++. +|. +.+..|.++++
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle----~dy--------p-g~riGpEPTtd~--Fi~---vM~G~~e~~ipGnal~ 115 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLE----QDY--------P-GLRIGPEPTTDR--FIA---VMHGDEEGSIPGNALV 115 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHh----CCC--------C-ccccCCCCCcce--eEE---EEecCcccccCCceee
Confidence 35555559999999 999999887765 222 1 112222221110 110 121 23455655554
Q ss_pred hh-------hHhhhhcHHHH-HHHHhhccCCCCEEEEeCCCCcccccc-cchHHHHHHHHH-hcCCCeEEEEEecCCCCC
Q 023298 92 YC-------MEHLEDNLDDW-LAEELDNYLDDDYLVFDCPGQIELFTH-VPVLRNFVDHLK-SRNFNVCAVYLLDSQFIT 161 (284)
Q Consensus 92 ~~-------~e~~~~~~~~~-l~~~l~~~~~~~~viiDtPg~~e~~~~-~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~ 161 (284)
.- +..+...+... .-.++..-.=.++.||||||..+.--. .+-+.-+...++ =++..+.|++|.|+....
T Consensus 116 vd~~~pF~gL~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD 195 (532)
T KOG1954|consen 116 VDAKKPFRGLNKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD 195 (532)
T ss_pred ecCCCchhhhhhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc
Confidence 32 22222222111 111111101247899999998764211 111111222222 113357889999998763
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccch
Q 023298 162 DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 162 ~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
=.++| +.+ +.++...+-.+=+|+||.|.++.+
T Consensus 196 IsdEf-~~v---i~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 196 ISDEF-KRV---IDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred ccHHH-HHH---HHHhhCCcceeEEEeccccccCHH
Confidence 33333 222 234455667788999999998765
No 393
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.74 E-value=0.0002 Score=63.78 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=42.5
Q ss_pred eehhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 3 RYLDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
..||-+..| =+.+...++|.|++ |||||+|..++....++|.+|+++.++-.
T Consensus 12 ~~LD~~l~g---G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 12 EELDRKLGG---GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred HHHHHhhCC---CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 346766553 26778889999999 99999999998877778999999999633
No 394
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.72 E-value=0.00077 Score=57.18 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=34.6
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
++|.||+ +||||++..++...++.|.+|+++.++...+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~ 40 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPE 40 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHH
Confidence 6899999 9999999999999999999999999876554
No 395
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=97.71 E-value=6.2e-05 Score=68.62 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=37.1
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
.+.|-|.| .||||++.||+..|+..|+||+.|-+||..+.+
T Consensus 2 ~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST 43 (273)
T PF00142_consen 2 KIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADST 43 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSS
T ss_pred eEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCccc
Confidence 47899999 999999999999999999999999999999975
No 396
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00021 Score=67.20 Aligned_cols=115 Identities=19% Similarity=0.332 Sum_probs=64.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH--HHHHHHHHHHHHHHHhcCCCEEEE-ecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV--TKFISGCMASLSAMVQLELPHVNI-LSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~--~~~i~~~l~~l~~~~~~~~p~IlV-lNK 190 (284)
...|-=+||||+.. ..+.|+.-...+|. .+++|-+...--| .+.+ ....+.+.++|+| +||
T Consensus 116 ~RhYaH~DCPGHAD------YIKNMItGaaqMDG---aILVVaatDG~MPQTrEHl-------LLArQVGV~~ivvfiNK 179 (449)
T KOG0460|consen 116 KRHYAHTDCPGHAD------YIKNMITGAAQMDG---AILVVAATDGPMPQTREHL-------LLARQVGVKHIVVFINK 179 (449)
T ss_pred ccccccCCCCchHH------HHHHhhcCccccCc---eEEEEEcCCCCCcchHHHH-------HHHHHcCCceEEEEEec
Confidence 55788899999643 23333221112343 3444433322122 2221 1123678888777 899
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCc----eEEE---EeccCc-------ccHHHH
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV----SFMP---LDLRKE-------SSIRYV 256 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~----~~ip---iSa~~~-------~~l~~L 256 (284)
.|++.+. ++.+..+. .+-+++.+|+|. .++- ++|+.| +.+..|
T Consensus 180 vD~V~d~-e~leLVEm----------------------E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kL 236 (449)
T KOG0460|consen 180 VDLVDDP-EMLELVEM----------------------EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKL 236 (449)
T ss_pred ccccCCH-HHHHHHHH----------------------HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHH
Confidence 9999766 56555531 234556677762 2443 455555 447888
Q ss_pred HHHHHHhcCCC
Q 023298 257 LSQIDNCIQWG 267 (284)
Q Consensus 257 l~~I~~~l~~g 267 (284)
++++|+++|.-
T Consensus 237 ldavDsyip~P 247 (449)
T KOG0460|consen 237 LDAVDSYIPTP 247 (449)
T ss_pred HHHHhccCCCc
Confidence 88888887753
No 397
>PF13479 AAA_24: AAA domain
Probab=97.68 E-value=0.00014 Score=64.13 Aligned_cols=36 Identities=14% Similarity=0.385 Sum_probs=31.1
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
++..++|.|++ +||||++..+ -++++||+|.+...+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~ 38 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSL 38 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccch
Confidence 46779999999 9999999988 589999999996543
No 398
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.67 E-value=7e-05 Score=63.66 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=38.0
Q ss_pred cccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 13 MSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 13 ~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
|.|..++..++++|++ |||||++..|+..|...+..+.++|-|
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d 44 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence 5678889999999999 999999999999999888888888644
No 399
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.65 E-value=6.6e-05 Score=69.10 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=35.6
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
|+++.|+|++ ||||||+.+|+..|.++| +|.+|+-||..
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~ 40 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTE 40 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCC
Confidence 3568899999 999999999999999999 89999999954
No 400
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00074 Score=57.88 Aligned_cols=121 Identities=13% Similarity=0.127 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHH-HHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS-AMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~-~~~~~~~p~IlVlNK~D 192 (284)
.....++|--||-+. +.|-+..- .....++|+||+..-.+-.+ ..+.+..+. .-..-+.|.+...||-|
T Consensus 68 ~~~l~fwdlgGQe~l-------rSlw~~yY--~~~H~ii~viDa~~~eR~~~-~~t~~~~v~~~E~leg~p~L~lankqd 137 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESL-------RSLWKKYY--WLAHGIIYVIDATDRERFEE-SKTAFEKVVENEKLEGAPVLVLANKQD 137 (197)
T ss_pred cceeEEEEcCChHHH-------HHHHHHHH--HHhceeEEeecCCCHHHHHH-HHHHHHHHHHHHHhcCCchhhhcchhh
Confidence 446789999997652 11212111 11357999999974221111 112222211 12335899999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+-... +..+.- ..++. ++.+. -.--.|.||||.+|+|+++=..-+.+.++..
T Consensus 138 ~q~~~-~~~El~-----~~~~~----------------~e~~~-~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 138 LQNAM-EAAELD-----GVFGL----------------AELIP-RRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhh-hHHHHH-----HHhhh----------------hhhcC-CccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 85432 222211 00000 11111 1124699999999999999888888777665
No 401
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.60 E-value=0.00062 Score=55.20 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=24.7
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
.++++||+ |||||++..++..+. ..+|+.|-
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence 37899999 999999999987543 55666665
No 402
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.60 E-value=0.0012 Score=58.28 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=34.8
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEecCcCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVNLDPAA 58 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVdLDPq~ 58 (284)
+.....++|.|++ +|||++|..++...+++ |.+|++|.++-..
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP 60 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH
Confidence 5667779999999 99999999999887777 9999999986544
No 403
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.58 E-value=8.4e-05 Score=58.81 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=24.5
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
+|+|.|++ |||||+|+.|++.+ |. .++++|-
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~--~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GF--PVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TC--EEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CC--eEEEecc
Confidence 48999999 99999999999976 33 3445554
No 404
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.53 E-value=0.00015 Score=61.51 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=36.1
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
...++++|++ |||||++..|+..+...|.++.++|-|....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 3468999999 9999999999999998898999999986543
No 405
>PRK07667 uridine kinase; Provisional
Probab=97.52 E-value=0.00017 Score=62.71 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=36.6
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
.+...|.|-|++ |||||+|..|++.|...|.++.+|.+|.
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 455778899999 9999999999999999999999999996
No 406
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00075 Score=58.51 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=66.1
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.=|.||.||-... .+.++.-+ + ..-++++.|.. +.+.| +.+||.-+.+....+..++++-||+|+
T Consensus 56 KlqiwDtaGqe~fr-------sv~~syYr-~-a~GalLVydit---~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL 123 (216)
T KOG0098|consen 56 KLQIWDTAGQESFR-------SVTRSYYR-G-AAGALLVYDIT---RRESFNHLTSWLEDARQHSNENMVIMLIGNKSDL 123 (216)
T ss_pred EEEEEecCCcHHHH-------HHHHHHhc-c-CcceEEEEEcc---chhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhh
Confidence 45788999975411 13333311 0 12244555654 33334 566666555555567888999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHH----HHhcCCCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQI----DNCIQWGED 269 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I----~~~l~~g~d 269 (284)
..++ ++.+- .+ ..+.+++++. |...||++++|+++.+..+ .+.++.|--
T Consensus 124 ~~rR-~Vs~E---------------EG----------eaFA~ehgLi-fmETSakt~~~VEEaF~nta~~Iy~~~q~g~~ 176 (216)
T KOG0098|consen 124 EARR-EVSKE---------------EG----------EAFAREHGLI-FMETSAKTAENVEEAFINTAKEIYRKIQDGVF 176 (216)
T ss_pred hccc-cccHH---------------HH----------HHHHHHcCce-eehhhhhhhhhHHHHHHHHHHHHHHHHHhccc
Confidence 7654 33110 00 1112456644 4489999999999887644 444555443
Q ss_pred C
Q 023298 270 A 270 (284)
Q Consensus 270 ~ 270 (284)
.
T Consensus 177 ~ 177 (216)
T KOG0098|consen 177 D 177 (216)
T ss_pred c
Confidence 3
No 407
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00053 Score=57.39 Aligned_cols=109 Identities=13% Similarity=0.261 Sum_probs=64.6
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.=+.||.|+-- + +.+... ... +...+++.|... .+.| +..+...+....-.+.|+|+|-||||
T Consensus 71 klQiwDTagqEr-y------rtiTTayyRg---amgfiLmyDitN---eeSf~svqdw~tqIktysw~naqvilvgnKCD 137 (193)
T KOG0093|consen 71 KLQIWDTAGQER-Y------RTITTAYYRG---AMGFILMYDITN---EESFNSVQDWITQIKTYSWDNAQVILVGNKCD 137 (193)
T ss_pred EEEEEecccchh-h------hHHHHHHhhc---cceEEEEEecCC---HHHHHHHHHHHHHheeeeccCceEEEEecccC
Confidence 567889999643 1 112111 111 345677888753 3333 33443333344557899999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+-+.+ .+ .. ++- ..+.++.|| .|+.-||+.+.|++.++..+...+
T Consensus 138 md~eR-vi----s~--------------e~g-------~~l~~~LGf-efFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 138 MDSER-VI----SH--------------ERG-------RQLADQLGF-EFFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred Cccce-ee----eH--------------HHH-------HHHHHHhCh-HHhhhcccccccHHHHHHHHHHHH
Confidence 84432 11 10 011 233355554 788899999999999888766554
No 408
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.50 E-value=0.00049 Score=64.71 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=39.6
Q ss_pred hhhhhh-cccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 5 LDLLCK-GYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
||.++. | =+..-+++.|.||+ |||||||.+++...++.|.+|++||..-
T Consensus 43 LD~~Lg~G---Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 43 LDLALGVG---GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred HHHHhcCC---CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 555553 2 23455678899999 9999999999999999999999998753
No 409
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00088 Score=64.77 Aligned_cols=110 Identities=14% Similarity=0.198 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHH-HhcCCCeEEEEEecCCCCCCH--HHHHHHHHHHHHHHHhcCCCE-EEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDV--TKFISGCMASLSAMVQLELPH-VNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l-~~~d~~~vil~LiDa~~~~~~--~~~i~~~l~~l~~~~~~~~p~-IlVlN 189 (284)
++-..|||.||+-+ +++.+ ..+...+.++++||+.....+ .+.+ ..+-.++.+. ++|+|
T Consensus 49 d~~~~fIDvpgh~~----------~i~~miag~~~~d~alLvV~~deGl~~qtgEhL-------~iLdllgi~~giivlt 111 (447)
T COG3276 49 DGVMGFIDVPGHPD----------FISNLLAGLGGIDYALLVVAADEGLMAQTGEHL-------LILDLLGIKNGIIVLT 111 (447)
T ss_pred CCceEEeeCCCcHH----------HHHHHHhhhcCCceEEEEEeCccCcchhhHHHH-------HHHHhcCCCceEEEEe
Confidence 45789999999543 33333 344455778899998533222 2222 2233567777 99999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+|..... .++...+ .|.+.+. +.-.++++.|+.+|+|+++|-+.|.+.+.
T Consensus 112 k~D~~d~~-r~e~~i~-----------------------~Il~~l~-l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 112 KADRVDEA-RIEQKIK-----------------------QILADLS-LANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ccccccHH-HHHHHHH-----------------------HHHhhcc-cccccccccccccCCCHHHHHHHHHHhhh
Confidence 99998654 3433321 1111112 33367899999999999999999999885
No 410
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=97.49 E-value=0.00072 Score=57.23 Aligned_cols=113 Identities=14% Similarity=0.238 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.+.-|-||.||-. ++.+++.. ... +.-++++.|.. +.+.| +.+|...+..|+....-.+.|-||+
T Consensus 61 ra~L~IWDTAGQEr---fHALGPIY---YRg---SnGalLVyDIT---DrdSFqKVKnWV~Elr~mlGnei~l~IVGNKi 128 (218)
T KOG0088|consen 61 RADLHIWDTAGQER---FHALGPIY---YRG---SNGALLVYDIT---DRDSFQKVKNWVLELRTMLGNEIELLIVGNKI 128 (218)
T ss_pred eeeeeeeeccchHh---hhccCceE---EeC---CCceEEEEecc---chHHHHHHHHHHHHHHHHhCCeeEEEEecCcc
Confidence 56889999999864 33444311 111 12355566653 55556 7889999999998889999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+-... .+- ..+ + ..+.+..+ ..++.-||+++.|+.+|+..+-..+-
T Consensus 129 DLEeeR-~Vt-~qe--------A----------------e~YAesvG-A~y~eTSAk~N~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 129 DLEEER-QVT-RQE--------A----------------EAYAESVG-ALYMETSAKDNVGISELFESLTAKMI 175 (218)
T ss_pred cHHHhh-hhh-HHH--------H----------------HHHHHhhc-hhheecccccccCHHHHHHHHHHHHH
Confidence 984322 110 000 0 00111112 45677899999999999887665443
No 411
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.49 E-value=0.00021 Score=62.79 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=42.9
Q ss_pred eehhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 3 RYLDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
+-||-++.| =+..-..+.|.|++ |||||+|..++..++..|.+|++++.+...
T Consensus 6 ~~LD~~l~G---Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 6 KGLDELLGG---GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred hHHHHHhcC---CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 346666643 24566779999999 999999999999999999999999987543
No 412
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.49 E-value=0.0042 Score=55.60 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=39.8
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
||-+..| -+.....++|.|+| |||||+|..++....+.|.++++|.++-
T Consensus 10 LD~~l~G---G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 10 MDEILHG---GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred HHHHhcC---CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 5554333 35667889999999 9999999999888778899999998764
No 413
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.00058 Score=57.27 Aligned_cols=109 Identities=10% Similarity=0.215 Sum_probs=61.6
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
+.-|-||.||-. +++ +.++.-+. ...++++.|.++.-+- +-+-.|+..+....+.+.-.|+|-||+|+-.
T Consensus 57 klqiwdtagqer---frs----itqsyyrs--ahalilvydiscqpsf-dclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 57 KLQIWDTAGQER---FRS----ITQSYYRS--AHALILVYDISCQPSF-DCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred EEEEeeccchHH---HHH----HHHHHhhh--cceEEEEEecccCcch-hhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 456889999753 222 22322111 1235556666543211 1145667777777787888899999999876
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
++ ++-..+.++ +.+.-..-|+.-||++-+|++.|+..+.
T Consensus 127 rr-evp~qigee--------------------------fs~~qdmyfletsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 127 RR-EVPQQIGEE--------------------------FSEAQDMYFLETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hh-hhhHHHHHH--------------------------HHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence 54 342222110 0111122355667888888888877654
No 414
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.46 E-value=0.00015 Score=62.36 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=32.1
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
+.|.|++ |||||+|..|+..+...|.++.+|.+|
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~D 36 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehh
Confidence 6899999 999999999999999999999999888
No 415
>PRK00098 GTPase RsgA; Reviewed
Probab=97.46 E-value=0.00061 Score=63.32 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=51.3
Q ss_pred CeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHH
Q 023298 148 NVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLN 227 (284)
Q Consensus 148 ~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~ 227 (284)
.+++++++|+.........+..++. .....++|.++|+||+|+..+......+.
T Consensus 81 iD~vllV~d~~~p~~~~~~idr~L~---~~~~~~ip~iIVlNK~DL~~~~~~~~~~~----------------------- 134 (298)
T PRK00098 81 VDQAVLVFAAKEPDFSTDLLDRFLV---LAEANGIKPIIVLNKIDLLDDLEEARELL----------------------- 134 (298)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHH---HHHHCCCCEEEEEEhHHcCCCHHHHHHHH-----------------------
Confidence 4678889998643221222333322 22356899999999999863321111111
Q ss_pred HHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 228 KSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 228 ~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
+.....+ ..++++||++++|+++|.+.+.
T Consensus 135 ----~~~~~~g-~~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 135 ----ALYRAIG-YDVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred ----HHHHHCC-CeEEEEeCCCCccHHHHHhhcc
Confidence 1122333 4789999999999999988764
No 416
>PRK06696 uridine kinase; Validated
Probab=97.46 E-value=0.0002 Score=63.51 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=35.8
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
-.+|..|.|-|++ |||||++..|++.|...|.+++.+.+|
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~D 59 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASID 59 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccc
Confidence 4478889999999 999999999999998889888887766
No 417
>PRK13796 GTPase YqeH; Provisional
Probab=97.45 E-value=0.0012 Score=63.15 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=52.7
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchh---hhhhhcCcchHHHHHHhhhcchhHHHH
Q 023298 149 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKK---EIEDYLNPESQFLLSELNQHMAPQFAK 225 (284)
Q Consensus 149 ~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~---~l~~~l~~~~~~l~~~l~~~~~~~~~~ 225 (284)
.++++++|+.... ..+... +.... .++|.++|+||+|++.+.. .+.+|+
T Consensus 71 ~lIv~VVD~~D~~--~s~~~~----L~~~~-~~kpviLViNK~DLl~~~~~~~~i~~~l--------------------- 122 (365)
T PRK13796 71 ALVVNVVDIFDFN--GSWIPG----LHRFV-GNNPVLLVGNKADLLPKSVKKNKVKNWL--------------------- 122 (365)
T ss_pred cEEEEEEECccCC--CchhHH----HHHHh-CCCCEEEEEEchhhCCCccCHHHHHHHH---------------------
Confidence 4899999986432 111111 11111 2689999999999975320 111121
Q ss_pred HHHHHHHHHhccCC--ceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 226 LNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 226 l~~~i~~~l~~~~~--~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
......++. ..++++||+++.|+++|++.|.+..+
T Consensus 123 -----~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~ 159 (365)
T PRK13796 123 -----RQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYRE 159 (365)
T ss_pred -----HHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 112233443 47999999999999999999987643
No 418
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.002 Score=61.30 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=47.7
Q ss_pred CEEEEeCCCCccccc----ccchHHHH----HHHHH--------hc--CCCeEEEEEecCCCC-CCHHHHHHHHHHHHHH
Q 023298 116 DYLVFDCPGQIELFT----HVPVLRNF----VDHLK--------SR--NFNVCAVYLLDSQFI-TDVTKFISGCMASLSA 176 (284)
Q Consensus 116 ~~viiDtPg~~e~~~----~~~~~~~l----~~~l~--------~~--d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~ 176 (284)
...+|||||.-.... |....+.+ -+.|. +. ....+|+|+|....- .+|-+. ..+ +
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di-~~M-k---- 153 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDI-EFM-K---- 153 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhH-HHH-H----
Confidence 578999999755433 33333222 11221 11 245789999976533 556552 111 1
Q ss_pred HHhcCCCEEEEecCCccccchhhhhhhc
Q 023298 177 MVQLELPHVNILSKMDLVTNKKEIEDYL 204 (284)
Q Consensus 177 ~~~~~~p~IlVlNK~Dll~~~~~l~~~l 204 (284)
-+......|.||-|+|.+.+. ++..+.
T Consensus 154 ~l~~~vNiIPVI~KaD~lT~~-El~~~K 180 (366)
T KOG2655|consen 154 KLSKKVNLIPVIAKADTLTKD-ELNQFK 180 (366)
T ss_pred HHhccccccceeeccccCCHH-HHHHHH
Confidence 123467899999999998866 665554
No 419
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00037 Score=66.21 Aligned_cols=99 Identities=17% Similarity=0.219 Sum_probs=65.5
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 100 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~ 100 (284)
+=++|-| ||||||...++. .+.+...+|+. .+-||-++++.-+.-.
T Consensus 5 ~GIVGlPNVGKSTlFnAlT~-------------~~a~~aNYPF~------------------TIePN~Giv~v~d~rl-- 51 (372)
T COG0012 5 IGIVGLPNVGKSTLFNALTK-------------AGAEIANYPFC------------------TIEPNVGVVYVPDCRL-- 51 (372)
T ss_pred eEEecCCCCcHHHHHHHHHc-------------CCccccCCCcc------------------cccCCeeEEecCchHH--
Confidence 4589999 999999999988 44344455552 2337877766433111
Q ss_pred HHHHHHHHhh-c--cCCCCEEEEeCCCCcccc-cccchHHHHHHHHHhcCCCeEEEEEecCC
Q 023298 101 LDDWLAEELD-N--YLDDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQ 158 (284)
Q Consensus 101 ~~~~l~~~l~-~--~~~~~~viiDtPg~~e~~-~~~~~~~~l~~~l~~~d~~~vil~LiDa~ 158 (284)
+.|.+..+ . .....+=|+|.+|.+... ..+.+|++|+..+... ++++++||+.
T Consensus 52 --~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRev---daI~hVVr~f 108 (372)
T COG0012 52 --DELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREV---DAIIHVVRCF 108 (372)
T ss_pred --HHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhc---CeEEEEEEec
Confidence 11221111 0 003467899999998874 4678899999999763 6899999986
No 420
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.40 E-value=0.00065 Score=64.96 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=61.3
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc-CCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP-AAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP-q~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
+-++|.| |||||+...|+.. .+ ....+|+. .+.||-+.+..-+.
T Consensus 5 ~GivGlPn~GKSTlfnaLT~~-------------~~~~~a~ypft------------------Ti~p~~g~v~v~d~--- 50 (368)
T TIGR00092 5 GGIVGLPNVGKSTLFAATTNL-------------LGNEAANPPFT------------------TIEPNAGVVNPSDP--- 50 (368)
T ss_pred EEEECCCCCChHHHHHHHhCC-------------CccccCCCCCC------------------CCCCceeEEEechh---
Confidence 6789999 9999999988872 22 22333332 12255444332110
Q ss_pred cHHHHHHHHhhccC--CCCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCC
Q 023298 100 NLDDWLAEELDNYL--DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQ 158 (284)
Q Consensus 100 ~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~ 158 (284)
.+ ++|.+.....+ ...+.++|.||.++... ....+++++.+++.. +++++++++.
T Consensus 51 r~-d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~---d~l~hVvr~f 108 (368)
T TIGR00092 51 RL-DLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREV---DIIQHVVRCF 108 (368)
T ss_pred HH-HHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhC---CEEEEEEeCC
Confidence 11 33433332211 45789999999988643 345678899998763 6789999874
No 421
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.39 E-value=0.0015 Score=57.34 Aligned_cols=71 Identities=10% Similarity=0.027 Sum_probs=40.7
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH------------------
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM------------------ 177 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~------------------ 177 (284)
.+-+.||+|+.+. ..+....-. -.+++++++|.+...+-.. +..|+..+...
T Consensus 55 ~l~IwDtaG~e~~-------~~l~~~~yr--~ad~iIlVyDvtn~~Sf~~-l~~W~~ei~~~~~~~~~~~~~~~~~~~~~ 124 (202)
T cd04102 55 FVELWDVGGSESV-------KSTRAVFYN--QVNGIILVHDLTNRKSSQN-LQRWSLEALNKDTFPTGLLVTNGDYDSEQ 124 (202)
T ss_pred EEEEEecCCchhH-------HHHHHHHhC--cCCEEEEEEECcChHHHHH-HHHHHHHHHHhhccccccccccccccccc
Confidence 5678999998542 112222211 1367888999864422222 44444433221
Q ss_pred -HhcCCCEEEEecCCccccc
Q 023298 178 -VQLELPHVNILSKMDLVTN 196 (284)
Q Consensus 178 -~~~~~p~IlVlNK~Dll~~ 196 (284)
...+.|+++|-||+|+...
T Consensus 125 ~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 125 FGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred cCCCCceEEEEEECccchhh
Confidence 1135899999999998653
No 422
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.0002 Score=64.16 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=39.2
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
+.+.|-|.| -||||+++|++..|+..|++|++|-+||.+..+
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDST 44 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADST 44 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchH
Confidence 457899999 999999999999999999999999999999854
No 423
>PRK04328 hypothetical protein; Provisional
Probab=97.38 E-value=0.006 Score=55.14 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=40.7
Q ss_pred ehhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 4 YLDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
-||-++.|- +.....++|.|++ +||||+|..++....+.|.++++|+++-
T Consensus 11 ~LD~lL~GG---ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 11 GMDEILYGG---IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred hHHHHhcCC---CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 466655442 4566779999999 9999999999988778899999999864
No 424
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.37 E-value=0.00038 Score=60.62 Aligned_cols=49 Identities=16% Similarity=0.313 Sum_probs=39.9
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
||-++.| =+..-..+.|.||+ |||||+|..++......|.+|++|+.+-
T Consensus 1 lD~~l~G---Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 1 IDELLGG---GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred ChhhhcC---CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3444444 24455678999999 9999999999999988999999999973
No 425
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.36 E-value=0.0014 Score=59.29 Aligned_cols=81 Identities=9% Similarity=0.254 Sum_probs=50.5
Q ss_pred eEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhh-hhcCcchHHHHHHhhhcchhHHHHH
Q 023298 149 VCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIE-DYLNPESQFLLSELNQHMAPQFAKL 226 (284)
Q Consensus 149 ~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~-~~l~~~~~~l~~~l~~~~~~~~~~l 226 (284)
+.++.++|+.... +. ..+..++. .....+.|.++|+||+|+.... ... ++
T Consensus 38 D~viiV~d~~~p~~s~-~~l~r~l~---~~~~~~i~~vIV~NK~DL~~~~-~~~~~~----------------------- 89 (245)
T TIGR00157 38 DQIVIVSSAVLPELSL-NQLDRFLV---VAEAQNIEPIIVLNKIDLLDDE-DMEKEQ----------------------- 89 (245)
T ss_pred CEEEEEEECCCCCCCH-HHHHHHHH---HHHHCCCCEEEEEECcccCCCH-HHHHHH-----------------------
Confidence 5677777775332 22 22444432 2234689999999999996533 221 11
Q ss_pred HHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 227 NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 227 ~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
.+.+...+ ..++.+||++|+|+++|++.+.+
T Consensus 90 ----~~~~~~~g-~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 90 ----LDIYRNIG-YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred ----HHHHHHCC-CeEEEEecCCchhHHHHHhhhcC
Confidence 11122333 47899999999999999987753
No 426
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.34 E-value=0.00019 Score=56.18 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=35.1
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
..++++||+ |||||++..++..+...+..+..++.+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~ 44 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcccc
Confidence 458999999 99999999999988877777888888876654
No 427
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.33 E-value=0.00025 Score=63.86 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=32.3
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
|+++|++ |||||++..|++++...|.++.+++.|.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 7899999 9999999999999998899999998764
No 428
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.31 E-value=0.00044 Score=58.60 Aligned_cols=40 Identities=8% Similarity=0.061 Sum_probs=35.9
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
+.++.|+|+. |||||++.+|...|...|++|.+|..|+..
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence 3568899999 999999999999999999999999887664
No 429
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.29 E-value=0.00042 Score=60.57 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=33.7
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
.++..|.|.|++ |||||++..|+..+ .+.++.+++.|.-
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~ 43 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDSY 43 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence 467889999999 99999999999987 4567889999864
No 430
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.29 E-value=0.0048 Score=53.61 Aligned_cols=116 Identities=9% Similarity=0.209 Sum_probs=56.8
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhH
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 95 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e 95 (284)
..|..+++.|++ |||||+...+...+. +.....||.|-=....|- ..+++.. +|.-....+-.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~-----------~~~~~~~---~~~~~~~~~~~ 76 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPD-----------YDELLKA---DPDEASELTQK 76 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTT-----------HHHHHHH---HCCCTHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccc-----------hhhhhhh---hhhhhHHHHHH
Confidence 789999999999 999999999888665 667888888765443321 1222221 12111111100
Q ss_pred hhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecC
Q 023298 96 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDS 157 (284)
Q Consensus 96 ~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa 157 (284)
....-.+..+...++ +..-+++||+.. +......+++.+++.++. +.++.+.+
T Consensus 77 ~a~~~~~~~~~~a~~---~~~nii~E~tl~-----~~~~~~~~~~~~k~~GY~-v~l~~v~~ 129 (199)
T PF06414_consen 77 EASRLAEKLIEYAIE---NRYNIIFEGTLS-----NPSKLRKLIREAKAAGYK-VELYYVAV 129 (199)
T ss_dssp HHHHHHHHHHHHHHH---CT--EEEE--TT-----SSHHHHHHHHHHHCTT-E-EEEEEE--
T ss_pred HHHHHHHHHHHHHHH---cCCCEEEecCCC-----ChhHHHHHHHHHHcCCce-EEEEEEEC
Confidence 000011112333343 334577798773 333345577888777776 56666765
No 431
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.29 E-value=0.00042 Score=60.26 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=39.1
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
-++|..+.++|++ |||||++..|+..|...|..+.++|-|+-..
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 3788899999999 9999999999999988899899999887653
No 432
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.28 E-value=0.0069 Score=53.42 Aligned_cols=41 Identities=7% Similarity=0.047 Sum_probs=35.5
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
+.....++|.|++ +|||++|..++....++|.+|++|+++-
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3445678999999 9999999999998888899999999875
No 433
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.27 E-value=0.00048 Score=49.88 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=26.5
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
+++.|++ |||||++..|++.+ .++++.+++-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 6789999 99999999999998 5677777754
No 434
>PRK06762 hypothetical protein; Provisional
Probab=97.26 E-value=0.00034 Score=58.68 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=27.8
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
|..+++.|++ |||||++..|++.+ +..+.+++.|
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D 36 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQD 36 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHH
Confidence 5678999999 99999999999987 4456677644
No 435
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=97.26 E-value=0.011 Score=52.64 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=33.6
Q ss_pred EEEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 21 IKCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 21 ~~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
.++|.|++ +|||+.+..|++.|.++|++|.++ -|.++.
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~--KPi~~g 43 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY--KPVAKG 43 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE--CccccC
Confidence 48899987 999999999999999999999885 777654
No 436
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.26 E-value=0.0024 Score=60.94 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=53.1
Q ss_pred CeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHH
Q 023298 148 NVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL 226 (284)
Q Consensus 148 ~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l 226 (284)
..++++++|+... .+-...+.. .. .++|+++|+||+|++.+........
T Consensus 64 ~~~Il~VvD~~d~~~s~~~~l~~-------~~-~~~piilV~NK~DLl~k~~~~~~~~---------------------- 113 (360)
T TIGR03597 64 NALIVYVVDIFDFEGSLIPELKR-------FV-GGNPVLLVGNKIDLLPKSVNLSKIK---------------------- 113 (360)
T ss_pred CcEEEEEEECcCCCCCccHHHHH-------Hh-CCCCEEEEEEchhhCCCCCCHHHHH----------------------
Confidence 4689999998533 121121211 11 2689999999999975331111111
Q ss_pred HHHHHHHHhccCC--ceEEEEeccCcccHHHHHHHHHHhc
Q 023298 227 NKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 227 ~~~i~~~l~~~~~--~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.-+.+...++++ ..++++||+++.|+++|++.|.+..
T Consensus 114 -~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~ 152 (360)
T TIGR03597 114 -EWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKAR 152 (360)
T ss_pred -HHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 001122344554 3699999999999999999998753
No 437
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.26 E-value=0.0035 Score=63.98 Aligned_cols=100 Identities=9% Similarity=0.129 Sum_probs=53.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHH----HhcCCCeEEEEEecCCCCCC-HHHHHHHHHHHHHHH--HhcCCCEEE
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHL----KSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAM--VQLELPHVN 186 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l----~~~d~~~vil~LiDa~~~~~-~~~~i~~~l~~l~~~--~~~~~p~Il 186 (284)
+.++.+|||||..+..........+++.+ .... .++++|+........ ..+. .++..+..+ ...-.-+|+
T Consensus 165 G~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~g-pDVVLlV~RLd~~~~D~eD~--~aLr~Iq~lFG~~Iwk~tIV 241 (763)
T TIGR00993 165 GVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNP-PDIVLYVDRLDMQTRDSNDL--PLLRTITDVLGPSIWFNAIV 241 (763)
T ss_pred CceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCC-CCEEEEEEeCCCccccHHHH--HHHHHHHHHhCHHhHcCEEE
Confidence 45789999999887432222233444433 2222 456777664432322 1221 122222222 223457899
Q ss_pred EecCCccccch------hhhhhhcCcchHHHHHHhh
Q 023298 187 ILSKMDLVTNK------KEIEDYLNPESQFLLSELN 216 (284)
Q Consensus 187 VlNK~Dll~~~------~~l~~~l~~~~~~l~~~l~ 216 (284)
|++..|.+..+ ..++.|+...++.+...+.
T Consensus 242 VFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Ir 277 (763)
T TIGR00993 242 TLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIG 277 (763)
T ss_pred EEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHH
Confidence 99999998531 1567777655555554443
No 438
>PHA00729 NTP-binding motif containing protein
Probab=97.25 E-value=0.00033 Score=62.66 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCE 43 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~ 43 (284)
+..-++|+|++ +||||+|..++..+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34468999999 999999999999765
No 439
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.24 E-value=0.00047 Score=58.08 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=33.0
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+.|+|+. |||||++..|...|...|.+|.+|.-|..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~ 38 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHH 38 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 6789999 99999999999999999999999997743
No 440
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.18 E-value=0.00056 Score=55.79 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=34.6
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
++|+|++ +||||++..++..+...|.++++++.+....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 6899999 9999999999999999999999999986654
No 441
>PLN00023 GTP-binding protein; Provisional
Probab=97.17 E-value=0.003 Score=59.61 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=40.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh------------
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ------------ 179 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~------------ 179 (284)
..+-|.||+|+-... .+... +.. .+++++++|.+. ...| +..++..+.....
T Consensus 83 v~LqIWDTAGqErfr-------sL~~~yyr~---AdgiILVyDITd---r~SFenL~kWl~eI~~~~~~s~p~~s~~~~~ 149 (334)
T PLN00023 83 FFVELWDVSGHERYK-------DCRSLFYSQ---INGVIFVHDLSQ---RRTKTSLQKWASEVAATGTFSAPLGSGGPGG 149 (334)
T ss_pred EEEEEEECCCChhhh-------hhhHHhccC---CCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 357899999975411 12222 222 357888899764 3333 4455544433321
Q ss_pred cCCCEEEEecCCcccc
Q 023298 180 LELPHVNILSKMDLVT 195 (284)
Q Consensus 180 ~~~p~IlVlNK~Dll~ 195 (284)
.+.|+++|-||+|+..
T Consensus 150 ~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 150 LPVPYIVIGNKADIAP 165 (334)
T ss_pred CCCcEEEEEECccccc
Confidence 2479999999999864
No 442
>PF13173 AAA_14: AAA domain
Probab=97.15 E-value=0.00061 Score=55.04 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=30.1
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
+++|.||. |||||++..+++.+. .+.+++.+|+|-..
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPR 41 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHH
Confidence 48999999 999999999998766 56677788776433
No 443
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.15 E-value=0.00087 Score=59.18 Aligned_cols=40 Identities=13% Similarity=0.325 Sum_probs=36.3
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
+..-..+.|.|++ +||||+|..++...++.|.+|++|+.+
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4455678999999 999999999999999999999999998
No 444
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.15 E-value=0.00049 Score=54.87 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=29.3
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhc-----CCceEEEecCcCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETV-----RRTMHIVNLDPAA 58 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~-----g~~v~iVdLDPq~ 58 (284)
+..+++|.|++ +||||++.+++..+... +.+++.+++.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 34578999999 99999999999998764 5566666666555
No 445
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.14 E-value=0.00056 Score=59.23 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=29.2
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCc----eEEEecC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRT----MHIVNLD 55 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~----v~iVdLD 55 (284)
+|.|.||+ |||||+|..|+..|.+.|.+ +.++.+|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d 40 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLD 40 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeec
Confidence 47899999 99999999999999988876 4555554
No 446
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.00049 Score=62.61 Aligned_cols=46 Identities=4% Similarity=0.064 Sum_probs=41.6
Q ss_pred hhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 9 CKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 9 ~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
++.|+.|+.+...+++.||+ +|||.++.+++..+.+.|.+|+++..
T Consensus 95 ~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~ 141 (254)
T COG1484 95 LASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA 141 (254)
T ss_pred HHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 46788899999999999999 99999999999999988999988753
No 447
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.14 E-value=0.0007 Score=60.29 Aligned_cols=45 Identities=20% Similarity=0.105 Sum_probs=38.0
Q ss_pred ccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEE-EecCc
Q 023298 12 YMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHI-VNLDP 56 (284)
Q Consensus 12 ~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~i-VdLDP 56 (284)
++....++.++.|.||. |||||++..|+..+...+..+.+ |.+|.
T Consensus 26 ~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~ 72 (229)
T PRK09270 26 LQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDG 72 (229)
T ss_pred HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccc
Confidence 33456779999999999 99999999999999988777766 77775
No 448
>PF13245 AAA_19: Part of AAA domain
Probab=97.14 E-value=0.00082 Score=49.91 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=27.2
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhc----CCceEEEe
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETV----RRTMHIVN 53 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~----g~~v~iVd 53 (284)
....+|.||| |||||++.++..++... +++|+++-
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a 49 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLA 49 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 4447789999 99998888888887754 77777774
No 449
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.13 E-value=0.00068 Score=58.36 Aligned_cols=42 Identities=5% Similarity=0.156 Sum_probs=33.1
Q ss_pred cccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 13 MSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 13 ~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
+.|..+...+++.||+ +|||.++..++..+..+|++|.+++.
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 4678888899999999 99999999999999999999988864
No 450
>PRK06526 transposase; Provisional
Probab=97.13 E-value=0.00032 Score=63.82 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=35.3
Q ss_pred cccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEE
Q 023298 13 MSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIV 52 (284)
Q Consensus 13 ~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iV 52 (284)
+.|..++..++++||+ +|||+++.+++..+...|++|+++
T Consensus 92 ~~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 92 LDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CchhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 4577777889999999 999999999999999999988763
No 451
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=97.12 E-value=0.016 Score=55.30 Aligned_cols=159 Identities=14% Similarity=0.157 Sum_probs=86.4
Q ss_pred CceEEEEECC-C-CcHHHHHHHHHHHHHh-cCCceEEEecCcCCCC----CCCCccccccccccHHHHhhh-------cC
Q 023298 18 ALVIKCVFSP-P-PNQSTYCSSLYRHCET-VRRTMHIVNLDPAAEN----FDYPVAMDIRELISLEDVMEE-------LG 83 (284)
Q Consensus 18 ~~~~~~viG~-~-sGKTT~~~~La~~l~~-~g~~v~iVdLDPq~~~----~~~~~~~dir~~i~~~~vm~~-------~~ 83 (284)
+-+.+-++|. | ||=||++.|+|..++. .+..|+++|||-|... +.+++..+|.+.+...+-..+ ..
T Consensus 103 ~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~ 182 (366)
T COG4963 103 QGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTR 182 (366)
T ss_pred hceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHHHhc
Confidence 4455678887 4 9999999999999986 6789999999998873 344444444443221110000 01
Q ss_pred cccCchhhhhh-------HhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEec
Q 023298 84 LGPNGGLIYCM-------EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 156 (284)
Q Consensus 84 lgPng~l~~~~-------e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiD 156 (284)
+.++-.+.... +....+. ..|-+.+.. .+++|++|-| +.. .... .+.|.. ++.++.+++
T Consensus 183 ~~~~l~ll~a~~~~~~~~d~~~~~~-~~Ll~~~~~--~~~~vV~Dlp-~~~----~~~t---~~vL~~---Sd~iviv~e 248 (366)
T COG4963 183 LASGLKLLAAPTELAKNYDLKTGAV-ERLLDLLRG--SFDFVVVDLP-NIW----TDWT---RQVLSG---SDEIVIVAE 248 (366)
T ss_pred cCCCceeecCCcchhhhcccccchH-HHHHHHhhc--cCCeEEEcCC-Ccc----chHH---HHHHhc---CCeEEEEec
Confidence 11111111110 1111111 223333332 6799999999 332 2222 233433 345667777
Q ss_pred CCCC--CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 157 SQFI--TDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 157 a~~~--~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.+-. .... .++..+..+.....+.++|+||...-
T Consensus 249 ~sl~slR~ak----~lld~l~~~r~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 249 PSLASLRNAK----ELLDELKRLRPNDPKPILVLNRVGVP 284 (366)
T ss_pred ccHHHHHHHH----HHHHHHHHhCCCCCCceEEeeecCCC
Confidence 6422 1222 23333444445567889999998864
No 452
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.11 E-value=0.048 Score=47.85 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=19.3
Q ss_pred EEEECCC-CcHHHHHHHHHHHH
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l 42 (284)
|+|+|++ |||||+|..||+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999 99999999999864
No 453
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.10 E-value=0.0084 Score=59.39 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=30.8
Q ss_pred EEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 22 KCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 22 ~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
++|.|++ ||||+.|..|+.+|++.|++|.. +.||+
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~--fKp~~ 37 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAP--FKSQN 37 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEE--ECCcc
Confidence 4799998 99999999999999999999886 46763
No 454
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.018 Score=56.02 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=43.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH-HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF-ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~-i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++.+-+.||||+.. |+ +--.+.|.+. +.+|.+||+.+.-.|... +. ..-...++|++..+||.|
T Consensus 80 ~~~iNLLDTPGHeD-FS-----EDTYRtLtAv---DsAvMVIDaAKGiE~qT~KLf------eVcrlR~iPI~TFiNKlD 144 (528)
T COG4108 80 DCLVNLLDTPGHED-FS-----EDTYRTLTAV---DSAVMVIDAAKGIEPQTLKLF------EVCRLRDIPIFTFINKLD 144 (528)
T ss_pred CeEEeccCCCCccc-cc-----hhHHHHHHhh---heeeEEEecccCccHHHHHHH------HHHhhcCCceEEEeeccc
Confidence 45677899999543 32 2233456553 567889999877555542 11 112235899999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
.-.
T Consensus 145 R~~ 147 (528)
T COG4108 145 REG 147 (528)
T ss_pred ccc
Confidence 854
No 455
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.10 E-value=0.0036 Score=59.39 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=31.0
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
...+|.|-- |||||+..++.+. ..|+++++|-.|-+..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G~~ 43 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFGDL 43 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCccc
Confidence 457888987 9999999999873 4788999998887754
No 456
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.09 E-value=0.00079 Score=61.28 Aligned_cols=40 Identities=8% Similarity=0.056 Sum_probs=36.5
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
+.....++|.|++ +||||+|..++...+++|.+|++|.++
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 5566779999999 999999999999988889999999997
No 457
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.09 E-value=0.00066 Score=61.50 Aligned_cols=45 Identities=7% Similarity=0.149 Sum_probs=36.6
Q ss_pred hhcccccccC-ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 9 CKGYMSWLYA-LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 9 ~~~~~~~~~~-~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
|+.|+..|.. ...+++.|++ +|||+++.+++.+|...|++|++++
T Consensus 88 a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 88 ARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555554443 2368999999 9999999999999999999999984
No 458
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.08 E-value=0.0025 Score=59.87 Aligned_cols=153 Identities=21% Similarity=0.264 Sum_probs=77.7
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhh-h-Hh
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYC-M-EH 96 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~-~-e~ 96 (284)
...+|.|-- ||||||..++... ..|+|+++|--|-+.....- +++.-.. .+-..+ .||- +.| + +-
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG~v~iD~-------~ll~~~~-~~v~eL-~~GC-iCCs~~~~ 72 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFGEVSVDD-------QLIGDRA-TQIKTL-TNGC-ICCSRSNE 72 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcCCccccH-------HHHhCcC-ceEEEE-CCCE-EEEccCch
Confidence 347888988 9999999999864 47889999877777543210 0110000 000011 2332 222 1 12
Q ss_pred hhhcHHHHHHHHhh-ccCCCCEEEEeCCCCcccccccchHHHHH--HHHHh-cCCCeEEEEEecCCCCCCH-HHHHHHHH
Q 023298 97 LEDNLDDWLAEELD-NYLDDDYLVFDCPGQIELFTHVPVLRNFV--DHLKS-RNFNVCAVYLLDSQFITDV-TKFISGCM 171 (284)
Q Consensus 97 ~~~~~~~~l~~~l~-~~~~~~~viiDtPg~~e~~~~~~~~~~l~--~~l~~-~d~~~vil~LiDa~~~~~~-~~~i~~~l 171 (284)
+...+.+.+.+.-. .. +.++|+|-|.|..+.. +....+. ..+.. .. -.-++.++|+..+... ..+ ..
T Consensus 73 l~~~l~~l~~~~~~~~~-~~d~IvIEttG~a~p~---~i~~~~~~~~~l~~~~~-l~~vvtvvDa~~~~~~~~~~--~~- 144 (318)
T PRK11537 73 LEDALLDLLDNLDKGNI-QFDRLVIECTGMADPG---PIIQTFFSHEVLCQRYL-LDGVIALVDAVHADEQMNQF--TI- 144 (318)
T ss_pred HHHHHHHHHHHHhccCC-CCCEEEEECCCccCHH---HHHHHHhcChhhcccEE-eccEEEEEEhhhhhhhcccc--HH-
Confidence 33333222221111 11 4689999999976522 1122221 12221 11 1358889999755221 111 00
Q ss_pred HHHHHHHhcCCCEEEEecCCccccc
Q 023298 172 ASLSAMVQLELPHVNILSKMDLVTN 196 (284)
Q Consensus 172 ~~l~~~~~~~~p~IlVlNK~Dll~~ 196 (284)
...+..---++|+||+|++..
T Consensus 145 ----~~~Qi~~AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 145 ----AQSQVGYADRILLTKTDVAGE 165 (318)
T ss_pred ----HHHHHHhCCEEEEeccccCCH
Confidence 011233356899999999864
No 459
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.08 E-value=0.0028 Score=58.62 Aligned_cols=81 Identities=12% Similarity=0.086 Sum_probs=51.1
Q ss_pred CeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHH
Q 023298 148 NVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL 226 (284)
Q Consensus 148 ~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l 226 (284)
.+++++++|+.... ++. .+..++. .+...++|.++|+||+|+..+. +...+.
T Consensus 79 vD~vllV~d~~~p~~s~~-~ldr~L~---~~~~~~ip~iIVlNK~DL~~~~-~~~~~~---------------------- 131 (287)
T cd01854 79 VDQLVIVVSLNEPFFNPR-LLDRYLV---AAEAAGIEPVIVLTKADLLDDE-EEELEL---------------------- 131 (287)
T ss_pred CCEEEEEEEcCCCCCCHH-HHHHHHH---HHHHcCCCEEEEEEHHHCCChH-HHHHHH----------------------
Confidence 46788889986443 322 2333322 2334689999999999987532 111111
Q ss_pred HHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 227 NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 227 ~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
......+ ..++++||+++.|++.|...+.
T Consensus 132 -----~~~~~~g-~~v~~vSA~~g~gi~~L~~~L~ 160 (287)
T cd01854 132 -----VEALALG-YPVLAVSAKTGEGLDELREYLK 160 (287)
T ss_pred -----HHHHhCC-CeEEEEECCCCccHHHHHhhhc
Confidence 0011223 5789999999999999888775
No 460
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0033 Score=62.73 Aligned_cols=113 Identities=22% Similarity=0.434 Sum_probs=70.2
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhh
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 94 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~ 94 (284)
.--|+++.|+||+ +|||||...|...+...-- -+|+..|++ +
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti-------------------~~i~GPiTv---------------v--- 108 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTI-------------------DEIRGPITV---------------V--- 108 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhh-------------------hccCCceEE---------------e---
Confidence 4568888899999 9999999999997764311 022222221 0
Q ss_pred HhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC--HHHHHHHHHH
Q 023298 95 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD--VTKFISGCMA 172 (284)
Q Consensus 95 e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~--~~~~i~~~l~ 172 (284)
.. +...+.|+.||.-+ ..|+.-. .++++++++||+.+.-. .-+|+ +
T Consensus 109 ---------------sg-K~RRiTflEcp~Dl---------~~miDva---KIaDLVlLlIdgnfGfEMETmEFL-n--- 156 (1077)
T COG5192 109 ---------------SG-KTRRITFLECPSDL---------HQMIDVA---KIADLVLLLIDGNFGFEMETMEFL-N--- 156 (1077)
T ss_pred ---------------ec-ceeEEEEEeChHHH---------HHHHhHH---HhhheeEEEeccccCceehHHHHH-H---
Confidence 00 13467899999532 2243333 23578999999986543 33333 2
Q ss_pred HHHHHHhcCCCEE-EEecCCccccchhhh
Q 023298 173 SLSAMVQLELPHV-NILSKMDLVTNKKEI 200 (284)
Q Consensus 173 ~l~~~~~~~~p~I-lVlNK~Dll~~~~~l 200 (284)
.+...+.|-| -|++-.|+.++...+
T Consensus 157 ---il~~HGmPrvlgV~ThlDlfk~~stL 182 (1077)
T COG5192 157 ---ILISHGMPRVLGVVTHLDLFKNPSTL 182 (1077)
T ss_pred ---HHhhcCCCceEEEEeecccccChHHH
Confidence 2346777765 478899998754334
No 461
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.07 E-value=0.013 Score=57.55 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=34.4
Q ss_pred ceEEEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 19 LVIKCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 19 ~~~~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+..++|.|++ |||||.+..|+.+|+++|++|..+-..|.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd 43 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPD 43 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCC
Confidence 4468999997 99999999999999999999999977554
No 462
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=97.06 E-value=0.022 Score=48.67 Aligned_cols=116 Identities=14% Similarity=0.170 Sum_probs=62.7
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh--cCCCEEEEecCCcc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ--LELPHVNILSKMDL 193 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~--~~~p~IlVlNK~Dl 193 (284)
+.=+-||.||-. +++ +.+..-.. +.-++.+.|...-.+ -+.+..++....+... .+.-+.+|-.|+|+
T Consensus 59 klqlwdtagqer---frs----itksyyrn--svgvllvyditnr~s-fehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL 128 (213)
T KOG0091|consen 59 KLQLWDTAGQER---FRS----ITKSYYRN--SVGVLLVYDITNRES-FEHVENWVKEAAMATQGPDKVVFLLVGHKSDL 128 (213)
T ss_pred EEEEeeccchHH---HHH----HHHHHhhc--ccceEEEEeccchhh-HHHHHHHHHHHHHhcCCCCeeEEEEeccccch
Confidence 567889999754 111 33332221 233555667653211 1226666665444444 22334567789999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHH----HHHhcCCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQ----IDNCIQWGE 268 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~----I~~~l~~g~ 268 (284)
.+.+ ++.. -+ ++.+..+--..|+.-||++|.|+++-... |...+..|+
T Consensus 129 ~SqR-qVt~-EE-------------------------aEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~~i~qGe 180 (213)
T KOG0091|consen 129 QSQR-QVTA-EE-------------------------AEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQAIQQGE 180 (213)
T ss_pred hhhc-cccH-HH-------------------------HHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHHHHhcCc
Confidence 7544 2210 00 22222333378999999999999986554 444455554
No 463
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.06 E-value=0.0016 Score=55.79 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=34.3
Q ss_pred eEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhc
Q 023298 149 VCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYL 204 (284)
Q Consensus 149 ~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l 204 (284)
|++++++|+... .+.+..+...+. +...++|+|+|+||+|+++++ .+.+|+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~----l~~~~kp~IlVlNK~DL~~~~-~l~~~~ 52 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL----QAGGNKKLVLVLNKIDLVPKE-NVEKWL 52 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH----hccCCCCEEEEEehhhcCCHH-HHHHHH
Confidence 478999999864 444444433311 224578999999999998755 555555
No 464
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.05 E-value=0.0009 Score=56.94 Aligned_cols=34 Identities=9% Similarity=-0.038 Sum_probs=30.2
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
.|+|.|+. |||||++..|+++|...|++|..+--
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTRE 36 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 48899999 99999999999999999999876644
No 465
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.04 E-value=0.002 Score=60.70 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=34.6
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
..-+++.|.||+ |||||+|..++...++.|.+|++||..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 445668899999 999999999999999999999999963
No 466
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.04 E-value=0.00094 Score=59.95 Aligned_cols=36 Identities=6% Similarity=0.024 Sum_probs=32.9
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
++++.|+|+. |||||++..|+.+|..+|++|.+|--
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 3568899999 99999999999999999999999964
No 467
>PRK09354 recA recombinase A; Provisional
Probab=97.03 E-value=0.0023 Score=60.80 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=39.7
Q ss_pred hhhhhh-cccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 5 LDLLCK-GYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
||.++- | =+..-+++.|.||+ |||||+|..++...++.|.++++||..-
T Consensus 48 LD~~LG~G---Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 48 LDIALGIG---GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred HHHHhcCC---CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 565554 3 24456678899999 9999999999999999999999999753
No 468
>PRK05439 pantothenate kinase; Provisional
Probab=97.03 E-value=0.001 Score=62.25 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=34.3
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHh--cCCceEEEecC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCET--VRRTMHIVNLD 55 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~--~g~~v~iVdLD 55 (284)
-..|..|.|.|++ |||||+|..|+..|.. .+.+|.+|.+|
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~D 125 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTD 125 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecc
Confidence 3468888999999 9999999999999876 36788888887
No 469
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.03 E-value=0.0018 Score=60.93 Aligned_cols=99 Identities=16% Similarity=0.232 Sum_probs=66.5
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhhc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLEDN 100 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~~ 100 (284)
+=++|.| |||||+...|... --+...+||. .+-||-+-+.+.+ +.
T Consensus 23 iGIVGlPNvGKST~fnalT~~-------------~a~~~NfPF~------------------TIdPn~a~V~v~d---~R 68 (391)
T KOG1491|consen 23 IGIVGLPNVGKSTFFNALTKS-------------KAGAANFPFC------------------TIDPNEARVEVPD---SR 68 (391)
T ss_pred eeEeeCCCCchHHHHHHHhcC-------------CCCccCCCcc------------------eeccccceeecCc---hH
Confidence 5689999 9999999999882 3334456652 2237766554432 22
Q ss_pred HHHHHHHHhhccC--CCCEEEEeCCCCcccc-cccchHHHHHHHHHhcCCCeEEEEEecCC
Q 023298 101 LDDWLAEELDNYL--DDDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQ 158 (284)
Q Consensus 101 ~~~~l~~~l~~~~--~~~~viiDtPg~~e~~-~~~~~~~~l~~~l~~~d~~~vil~LiDa~ 158 (284)
+ +||.+.-...+ ...+-+.|..|..... ....+|++++.++... +.+++++++.
T Consensus 69 f-d~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~v---DaifhVVr~f 125 (391)
T KOG1491|consen 69 F-DLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHV---DAIFHVVRAF 125 (391)
T ss_pred H-HHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhc---cceeEEEEec
Confidence 3 55554433221 4678999999988764 5678899999999764 5678888764
No 470
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.02 E-value=0.00062 Score=63.18 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=34.1
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhc--CCceEEEecCc
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETV--RRTMHIVNLDP 56 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~--g~~v~iVdLDP 56 (284)
..|.++.|.||. |||||++..|+..+.+. +.+|.++.+|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 578989999999 99999999999988753 44788888886
No 471
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.01 E-value=0.00075 Score=62.01 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=28.6
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
..++++|-| |||||+|..|+.++...+.+|.+|+.|--
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~ 40 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSL 40 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 358999999 99999999999999999999999995433
No 472
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.00061 Score=60.25 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=31.6
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
..+++.|+| |||||++++||..|.+.+.+|..+--|-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 348999999 9999999999999999988877665543
No 473
>PRK01889 GTPase RsgA; Reviewed
Probab=97.00 E-value=0.0012 Score=62.85 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=61.7
Q ss_pred CCEEEEeC--CCCcc-cccccchHHHHHHHH---------HhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 023298 115 DDYLVFDC--PGQIE-LFTHVPVLRNFVDHL---------KSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL 182 (284)
Q Consensus 115 ~~~viiDt--Pg~~e-~~~~~~~~~~l~~~l---------~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~ 182 (284)
.|.|++|+ ||.++ ....+. .|.+.- -+++ .|.+++++++..--++. ++..+ +......+.
T Consensus 72 GD~V~~~~~~~g~I~~i~pR~~---~L~R~~~~~~~~~q~iaAN-vD~vliV~s~~p~~~~~-~ldr~---L~~a~~~~i 143 (356)
T PRK01889 72 GDWVLLDNEKKARIVRLLPRRS---LFSRKAAGTRSEEQLIAAN-VDTVFIVCSLNHDFNLR-RIERY---LALAWESGA 143 (356)
T ss_pred CcEEEEecCCceEEEEEECCCc---eEEcCCCCCCccceeEEEe-CCEEEEEEecCCCCChh-HHHHH---HHHHHHcCC
Confidence 46899987 77664 233322 122211 0233 34577777774322221 23222 223445788
Q ss_pred CEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 183 PHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 183 p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
|.++|+||+|++.+..+..+.+ ... .....++++|++++.|++.|...+.
T Consensus 144 ~piIVLNK~DL~~~~~~~~~~~--------------------------~~~---~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 144 EPVIVLTKADLCEDAEEKIAEV--------------------------EAL---APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CEEEEEEChhcCCCHHHHHHHH--------------------------HHh---CCCCcEEEEECCCCccHHHHHHHhh
Confidence 9999999999975320111111 111 1235789999999999999888774
No 474
>PRK08118 topology modulation protein; Reviewed
Probab=96.99 E-value=0.00064 Score=57.82 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=20.5
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHH
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..|+|+||+ |||||+++.|++.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 359999999 99999999999864
No 475
>PRK09183 transposase/IS protein; Provisional
Probab=96.96 E-value=0.0012 Score=60.28 Aligned_cols=41 Identities=7% Similarity=0.076 Sum_probs=35.5
Q ss_pred cccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 13 MSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 13 ~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
++|..+...++++||+ +||||++..++..+...|++|.+++
T Consensus 96 ~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 96 LSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred CCchhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3566677779999999 9999999999998888999998876
No 476
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.96 E-value=0.001 Score=59.15 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=30.8
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHh--cCCceEEEecCcC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCET--VRRTMHIVNLDPA 57 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~--~g~~v~iVdLDPq 57 (284)
+-|.|+. |||||++..|+..+.. .+.++.+|.+|--
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 5688999 9999999999999975 5668888888854
No 477
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.94 E-value=0.017 Score=57.57 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=41.1
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEecCcCCC
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVNLDPAAE 59 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVdLDPq~~ 59 (284)
||-+..| .+..-..++|.|++ +||||+|.+++...+++ |.+|++|.++-..+
T Consensus 20 LD~~l~G---G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~ 73 (509)
T PRK09302 20 FDDITHG---GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPE 73 (509)
T ss_pred HHHhhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHH
Confidence 5555433 35666779999999 99999999999877766 99999999876554
No 478
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.94 E-value=0.0031 Score=59.81 Aligned_cols=132 Identities=12% Similarity=0.175 Sum_probs=67.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC-----H-HHHHHHHHHHHHHHHh----cCCCE
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-----V-TKFISGCMASLSAMVQ----LELPH 184 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~-----~-~~~i~~~l~~l~~~~~----~~~p~ 184 (284)
..+.++|..||-. .++ +-...+.. ...++|++|.+.... + ...+...+..+..+.+ .++|+
T Consensus 184 ~~~~~~DvgGqr~--~R~----kW~~~f~~---v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pi 254 (342)
T smart00275 184 LFFRMFDVGGQRS--ERK----KWIHCFDN---VTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSI 254 (342)
T ss_pred eEEEEEecCCchh--hhh----hHHHHhCC---CCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcE
Confidence 3467889999743 111 11223332 467999999875321 1 1223333333333433 46899
Q ss_pred EEEecCCccccchh---hhhhhcCc--chHHHHHHhhhcchhHHHHHHHHHHHHHhc-c-CCceEEEEeccCcccHHHHH
Q 023298 185 VNILSKMDLVTNKK---EIEDYLNP--ESQFLLSELNQHMAPQFAKLNKSLIELVDE-Y-SMVSFMPLDLRKESSIRYVL 257 (284)
Q Consensus 185 IlVlNK~Dll~~~~---~l~~~l~~--~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~-~-~~~~~ipiSa~~~~~l~~Ll 257 (284)
++++||.|+..++- .+..+... +..+...... ... ....++... . ...-.+..+|.+-.++..++
T Consensus 255 il~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~-----yi~---~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~ 326 (342)
T smart00275 255 ILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAK-----FIK---QKFLRLNRNSSRKSIYHHFTCATDTRNIRVVF 326 (342)
T ss_pred EEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHH-----HHH---HHHHHhccCCCCceEEEEEeeecccHHHHHHH
Confidence 99999999975431 12222110 0000000000 011 111122121 1 12456889999999999999
Q ss_pred HHHHHh
Q 023298 258 SQIDNC 263 (284)
Q Consensus 258 ~~I~~~ 263 (284)
..+.+.
T Consensus 327 ~~v~~~ 332 (342)
T smart00275 327 DAVKDI 332 (342)
T ss_pred HHHHHH
Confidence 877665
No 479
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.94 E-value=0.0016 Score=57.82 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=39.8
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEecCcCC
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVNLDPAA 58 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVdLDPq~ 58 (284)
||-+..|+ ..-..++|.|++ +||||+|.+++..++.. |.+|+++.++-..
T Consensus 3 LD~~~~Gl----~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 3 LDNLTGGL----QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred hhhhhcCC----CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 45555554 344568899999 99999999999998887 9999999987644
No 480
>PRK08233 hypothetical protein; Provisional
Probab=96.94 E-value=0.00084 Score=56.71 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=29.6
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+..|.|.|++ |||||+|..|+..+. +.++...|.+.+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~ 40 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDF 40 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence 4568889999 999999999999874 346777777754
No 481
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.003 Score=55.66 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=64.6
Q ss_pred EEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccc
Q 023298 117 YLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTN 196 (284)
Q Consensus 117 ~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~ 196 (284)
--|-||.||-- .+. +..+.-+ + ..-++.+.|..+-.+-. .+..||..|--....+.++++|-||+||.+.
T Consensus 65 aqIWDTAGQER---yrA----itSaYYr-g-AvGAllVYDITr~~Tfe-nv~rWL~ELRdhad~nivimLvGNK~DL~~l 134 (222)
T KOG0087|consen 65 AQIWDTAGQER---YRA----ITSAYYR-G-AVGALLVYDITRRQTFE-NVERWLKELRDHADSNIVIMLVGNKSDLNHL 134 (222)
T ss_pred Eeeecccchhh---hcc----ccchhhc-c-cceeEEEEechhHHHHH-HHHHHHHHHHhcCCCCeEEEEeecchhhhhc
Confidence 46779999753 111 1122211 1 23466677875443222 3777877666666678999999999999542
Q ss_pred hhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 197 KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 197 ~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
+ .. -.++ .+.+.+-....|+..||+++.|++..+..+.
T Consensus 135 r-aV---~te~-----------------------~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l 172 (222)
T KOG0087|consen 135 R-AV---PTED-----------------------GKAFAEKEGLFFLETSALDATNVEKAFERVL 172 (222)
T ss_pred c-cc---chhh-----------------------hHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence 2 11 0000 1112233347899999999999998776544
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.92 E-value=0.0011 Score=57.33 Aligned_cols=33 Identities=9% Similarity=0.118 Sum_probs=29.2
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
+.|+||. |||||++..|+..+ .+.++.++.+|.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence 6799999 99999999999988 566889999984
No 483
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0086 Score=60.18 Aligned_cols=68 Identities=22% Similarity=0.322 Sum_probs=43.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++.+-+|||||++..... .-++|..+| -+|.++|+... .+...-++. ++.+.+.|.|.-+||.|
T Consensus 103 ~~~iNiIDTPGHvDFT~E------VeRALrVlD---GaVlvl~aV~GVqsQt~tV~r------Q~~ry~vP~i~FiNKmD 167 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFE------VERALRVLD---GAVLVLDAVAGVESQTETVWR------QMKRYNVPRICFINKMD 167 (721)
T ss_pred cceeEEecCCCceeEEEE------ehhhhhhcc---CeEEEEEcccceehhhHHHHH------HHHhcCCCeEEEEehhh
Confidence 567899999998863211 223454444 34445666533 333333432 45688999999999999
Q ss_pred cccc
Q 023298 193 LVTN 196 (284)
Q Consensus 193 ll~~ 196 (284)
.+..
T Consensus 168 RmGa 171 (721)
T KOG0465|consen 168 RMGA 171 (721)
T ss_pred hcCC
Confidence 9753
No 484
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.91 E-value=0.0017 Score=55.53 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=36.7
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
..++..++++|++ |||||++..|+..+...|..+..+|-|+-.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 3567789999999 999999999999998888888888877543
No 485
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.90 E-value=0.0015 Score=51.57 Aligned_cols=40 Identities=10% Similarity=0.108 Sum_probs=33.2
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
...++|.||+ +||||++..++..+...+.++..++.....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~ 59 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLL 59 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhh
Confidence 4459999999 999999999999988777788888765444
No 486
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.90 E-value=0.0015 Score=56.12 Aligned_cols=34 Identities=6% Similarity=-0.003 Sum_probs=30.3
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
..|+|.|+. |||||+|..|+++|...|++|..+-
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 38 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR 38 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 349999999 9999999999999999999887653
No 487
>PRK08506 replicative DNA helicase; Provisional
Probab=96.89 E-value=0.011 Score=58.46 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=39.9
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
||-+..| |.+-..++|-|.| +||||++.+++..++..|.+|+++.|.-...
T Consensus 182 LD~~~~G----~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ 233 (472)
T PRK08506 182 LNKMTKG----FNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAE 233 (472)
T ss_pred HHhhcCC----CCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHH
Confidence 4555544 3444457888888 9999999999999988899999998876554
No 488
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.89 E-value=0.0021 Score=54.86 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=23.7
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCce
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTM 49 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v 49 (284)
+++.|++ +||||++..+.+.|...|.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 7899999 999999999999997766554
No 489
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=96.88 E-value=0.034 Score=57.50 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=33.0
Q ss_pred eEEEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 20 VIKCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 20 ~~~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
+.++|.|++ ||||+.|..|+++|.++|.+|.++= |.+.
T Consensus 3 k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK--Pi~~ 42 (684)
T PRK05632 3 RSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK--PIAQ 42 (684)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC--Cccc
Confidence 358899997 9999999999999999999999865 6554
No 490
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.88 E-value=0.0029 Score=69.03 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=48.9
Q ss_pred CCCEEEEeCCCCccccc-----ccchHHHHHHHHHh---cCCCeEEEEEecCCCCC--CHHH------HHHHHHHHHHHH
Q 023298 114 DDDYLVFDCPGQIELFT-----HVPVLRNFVDHLKS---RNFNVCAVYLLDSQFIT--DVTK------FISGCMASLSAM 177 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~-----~~~~~~~l~~~l~~---~d~~~vil~LiDa~~~~--~~~~------~i~~~l~~l~~~ 177 (284)
..+.|+|||+|..-.-. ....-..+++.|++ ..-..-||+.||..... ++.. .+...+..+...
T Consensus 160 ~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~ 239 (1169)
T TIGR03348 160 TDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ 239 (1169)
T ss_pred cCCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34779999999653211 11223446666642 11123577778876542 3322 234444555555
Q ss_pred HhcCCCEEEEecCCccc
Q 023298 178 VQLELPHVNILSKMDLV 194 (284)
Q Consensus 178 ~~~~~p~IlVlNK~Dll 194 (284)
+....|+.+|++|+|++
T Consensus 240 lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 240 LGARFPVYLVLTKADLL 256 (1169)
T ss_pred hCCCCCEEEEEecchhh
Confidence 67789999999999997
No 491
>PRK13808 adenylate kinase; Provisional
Probab=96.87 E-value=0.055 Score=51.24 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEECCC-CcHHHHHHHHHHHH
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l 42 (284)
++|+||| |||||+|..|++.+
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999 99999999999864
No 492
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.84 E-value=0.0037 Score=53.48 Aligned_cols=28 Identities=11% Similarity=0.142 Sum_probs=24.1
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEE
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIV 52 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iV 52 (284)
++|+|++ |||||+|..++.. .+.+++++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~ 30 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYI 30 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEE
Confidence 6899999 9999999999864 56688887
No 493
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.83 E-value=0.0024 Score=56.41 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=39.6
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
||-+..| -+..-..++|.|++ +||||++.+++....+.|.++++|+++-
T Consensus 9 LD~~l~G---Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 9 LDKLLEG---GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred HHHhhcC---CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 5555543 35666779999999 9999999999987777899999999853
No 494
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.82 E-value=0.0018 Score=55.38 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=30.7
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHh----------cCCceEEEecCcCCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCET----------VRRTMHIVNLDPAAE 59 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~----------~g~~v~iVdLDPq~~ 59 (284)
...+|.|++ +||||++..++..++. .+.+|++|+++-..+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~ 83 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSES 83 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHH
Confidence 358899999 9999999999999986 677999999887653
No 495
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.81 E-value=0.022 Score=53.74 Aligned_cols=148 Identities=20% Similarity=0.267 Sum_probs=75.7
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCC-----CCccccccccccHHHHhhhcCcccCchhhhhh-
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFD-----YPVAMDIRELISLEDVMEELGLGPNGGLIYCM- 94 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~-----~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~- 94 (284)
.+|.|== |||||+..++.+... |+|+++|=-+-+--... -..+.++.++ +|| =+.|.
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El-------------~nG-CICCT~ 67 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFGEVGIDGGALLSDTGEEVVEL-------------TNG-CICCTV 67 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCccccccCCCccccCCccEEEe-------------CCc-eEEEec
Confidence 5677765 999999999988755 88888763332221110 0001111111 333 34442
Q ss_pred -HhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHH--HHHhcCCCeEEEEEecCCCCCCHHHHHHHHH
Q 023298 95 -EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVD--HLKSRNFNVCAVYLLDSQFITDVTKFISGCM 171 (284)
Q Consensus 95 -e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~--~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l 171 (284)
+.+...+ .-|.+ .+. ..++++|=|.|..+... ....+.. .+...-.-+-++-+||+..+......+...+
T Consensus 68 r~dl~~~~-~~L~~-~~~--~~D~ivIEtTGlA~P~p---v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~ 140 (323)
T COG0523 68 RDDLLPAL-ERLLR-RRD--RPDRLVIETTGLADPAP---VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELA 140 (323)
T ss_pred cchhHHHH-HHHHh-ccC--CCCEEEEeCCCCCCCHH---HHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHH
Confidence 1122222 11222 222 46899999999876421 1121211 1211101134788999976643332222221
Q ss_pred HHHHHHHhcCCCEEEEecCCccccch
Q 023298 172 ASLSAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 172 ~~l~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
. .+..--=++|+||+|++.+.
T Consensus 141 ~-----~Qia~AD~ivlNK~Dlv~~~ 161 (323)
T COG0523 141 E-----DQLAFADVIVLNKTDLVDAE 161 (323)
T ss_pred H-----HHHHhCcEEEEecccCCCHH
Confidence 1 13333558999999999865
No 496
>PRK08181 transposase; Validated
Probab=96.81 E-value=0.0011 Score=60.80 Aligned_cols=43 Identities=16% Similarity=0.133 Sum_probs=37.1
Q ss_pred cc-ccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 12 YM-SWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 12 ~~-~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
++ +|..+...++++||+ +|||.++..++..+..+|++|.+++.
T Consensus 98 ~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 98 AGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred HHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 45 466677779999999 99999999999999999999888764
No 497
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.80 E-value=0.0022 Score=52.09 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=31.4
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
++++||+ +|||+++..+++.+ ++++..+++.++.+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~ 38 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTE 38 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTH
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccccc
Confidence 7899999 99999999999988 889999988887763
No 498
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.012 Score=56.34 Aligned_cols=219 Identities=15% Similarity=0.198 Sum_probs=102.7
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
.+.|+|.. +||||++--|.+.--..|+--+-+|+=---.+..-...-.|.. +-.|+-.-|.++.-.+
T Consensus 169 RvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~--------evlGFd~~g~vVNY~~---- 236 (591)
T KOG1143|consen 169 RVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISN--------EVLGFDNRGKVVNYAQ---- 236 (591)
T ss_pred EEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccch--------hcccccccccccchhh----
Confidence 48899999 9999999988875444443333333311111000000001111 1123322233332111
Q ss_pred cHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCC-C-CCHHHHHHHHHHHHHHH
Q 023298 100 NLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF-I-TDVTKFISGCMASLSAM 177 (284)
Q Consensus 100 ~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~-~-~~~~~~i~~~l~~l~~~ 177 (284)
++ -.++..++. ..-..|||-.|..... +--+..|.. -......+++-+.+ + ....+.+. ..
T Consensus 237 ~~--taEEi~e~S-SKlvTfiDLAGh~kY~------~TTi~gLtg-Y~Ph~A~LvVsA~~Gi~~tTrEHLg-------l~ 299 (591)
T KOG1143|consen 237 NM--TAEEIVEKS-SKLVTFIDLAGHAKYQ------KTTIHGLTG-YTPHFACLVVSADRGITWTTREHLG-------LI 299 (591)
T ss_pred cc--cHHHHHhhh-cceEEEeecccchhhh------eeeeeeccc-CCCceEEEEEEcCCCCccccHHHHH-------HH
Confidence 00 011122222 4457899999965421 101112322 11234445555543 2 22233221 22
Q ss_pred HhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhH-HHHHHHHH--HHHHhccCCceEEEEeccCcccHH
Q 023298 178 VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQ-FAKLNKSL--IELVDEYSMVSFMPLDLRKESSIR 254 (284)
Q Consensus 178 ~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~-~~~l~~~i--~~~l~~~~~~~~ipiSa~~~~~l~ 254 (284)
..++.|++++++|+|+.++. .++.... +.+.|+...-....++ ...=..++ ++-...-+.+.++.+|.-.|+|+.
T Consensus 300 ~AL~iPfFvlvtK~Dl~~~~-~~~~tv~-~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ 377 (591)
T KOG1143|consen 300 AALNIPFFVLVTKMDLVDRQ-GLKKTVK-DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLR 377 (591)
T ss_pred HHhCCCeEEEEEeeccccch-hHHHHHH-HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchh
Confidence 35688999999999998865 4544432 2233332221100000 00000111 122333456889999999999976
Q ss_pred HHHHHHHHhcCCCCCCC
Q 023298 255 YVLSQIDNCIQWGEDAD 271 (284)
Q Consensus 255 ~Ll~~I~~~l~~g~d~~ 271 (284)
|+......++.+-..+
T Consensus 378 -ll~~fLn~Lsp~~~~~ 393 (591)
T KOG1143|consen 378 -LLRTFLNCLSPAGTAE 393 (591)
T ss_pred -HHHHHHhhcCCcCChH
Confidence 4555556666555444
No 499
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.80 E-value=0.0021 Score=55.28 Aligned_cols=40 Identities=5% Similarity=-0.042 Sum_probs=34.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
.+.++.|+|+. |||||++..+...|...|.+|..|=-+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~ 45 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 35568899999 99999999999999999999999876543
No 500
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.79 E-value=0.011 Score=58.97 Aligned_cols=27 Identities=11% Similarity=-0.015 Sum_probs=22.9
Q ss_pred ccccCceEEEEECCC-CcHHHHHHHHHH
Q 023298 14 SWLYALVIKCVFSPP-PNQSTYCSSLYR 40 (284)
Q Consensus 14 ~~~~~~~~~~viG~~-sGKTT~~~~La~ 40 (284)
+.--+...|+++|-. ||||+|...|++
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~ 31 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLE 31 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHh
Confidence 334466789999999 999999999987
Done!