Query 023298
Match_columns 284
No_of_seqs 205 out of 1550
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yrb_A ATP(GTP)binding protein 100.0 2.8E-30 9.4E-35 230.0 19.6 246 14-270 9-261 (262)
2 3iev_A GTP-binding protein ERA 99.7 1.9E-16 6.6E-21 145.5 16.3 180 17-275 8-191 (308)
3 3p32_A Probable GTPase RV1496/ 99.7 8.5E-17 2.9E-21 150.7 13.9 198 16-266 76-284 (355)
4 1wf3_A GTP-binding protein; GT 99.6 1.7E-15 6E-20 139.0 14.2 122 114-273 54-180 (301)
5 2p67_A LAO/AO transport system 99.6 2.7E-15 9.2E-20 139.8 11.4 196 17-265 54-260 (341)
6 1ega_A Protein (GTP-binding pr 99.6 9.1E-15 3.1E-19 134.0 13.2 126 114-273 55-182 (301)
7 4dhe_A Probable GTP-binding pr 99.6 4.5E-14 1.5E-18 121.5 14.2 131 114-269 78-214 (223)
8 2dyk_A GTP-binding protein; GT 99.5 1.7E-13 5.7E-18 111.2 14.8 111 115-265 49-161 (161)
9 3pqc_A Probable GTP-binding pr 99.5 2.9E-13 9.9E-18 113.1 15.6 123 114-266 67-194 (195)
10 2j37_W Signal recognition part 99.5 3E-13 1E-17 132.4 14.4 202 17-263 99-310 (504)
11 2v3c_C SRP54, signal recogniti 99.5 4.5E-14 1.6E-18 135.8 8.3 150 18-195 98-252 (432)
12 1svi_A GTP-binding protein YSX 99.5 1.3E-12 4.4E-17 109.7 15.9 122 114-265 68-194 (195)
13 3end_A Light-independent proto 99.5 4.6E-13 1.6E-17 122.0 13.4 44 18-61 40-84 (307)
14 2hjg_A GTP-binding protein ENG 99.5 2.5E-13 8.4E-18 130.3 11.1 116 114-268 50-167 (436)
15 2wsm_A Hydrogenase expression/ 99.4 5.9E-13 2E-17 114.6 12.2 180 18-267 29-215 (221)
16 3i8s_A Ferrous iron transport 99.4 6.4E-13 2.2E-17 120.0 12.7 119 114-267 49-170 (274)
17 1lnz_A SPO0B-associated GTP-bi 99.4 1.4E-13 4.8E-18 128.6 8.5 122 115-269 206-333 (342)
18 1z0f_A RAB14, member RAS oncog 99.4 2.1E-12 7.1E-17 106.3 14.3 113 115-264 64-176 (179)
19 1wcv_1 SOJ, segregation protei 99.4 4.2E-13 1.4E-17 119.3 10.8 162 18-194 5-182 (257)
20 3iby_A Ferrous iron transport 99.4 8.3E-13 2.8E-17 118.3 11.9 115 114-263 47-164 (256)
21 4dzz_A Plasmid partitioning pr 99.4 1.3E-12 4.3E-17 111.2 11.9 137 20-193 2-142 (206)
22 3ea0_A ATPase, para family; al 99.4 2.7E-12 9.2E-17 112.2 14.2 157 19-194 4-185 (245)
23 2www_A Methylmalonic aciduria 99.4 5E-12 1.7E-16 118.2 16.5 196 19-265 74-278 (349)
24 1zj6_A ADP-ribosylation factor 99.4 2.1E-12 7.3E-17 108.1 12.6 128 114-275 59-187 (187)
25 3kjh_A CO dehydrogenase/acetyl 99.4 8.8E-13 3E-17 115.1 10.5 38 22-59 3-41 (254)
26 1wms_A RAB-9, RAB9, RAS-relate 99.4 3.3E-12 1.1E-16 105.2 13.2 115 115-268 56-176 (177)
27 2xxa_A Signal recognition part 99.4 2.8E-12 9.7E-17 123.3 14.5 152 17-195 98-254 (433)
28 1kao_A RAP2A; GTP-binding prot 99.4 3E-12 1E-16 103.7 12.3 111 115-265 51-165 (167)
29 1c1y_A RAS-related protein RAP 99.4 3.7E-12 1.3E-16 103.5 12.6 113 115-265 51-166 (167)
30 2oze_A ORF delta'; para, walke 99.4 4.2E-12 1.4E-16 114.8 14.1 40 21-60 36-79 (298)
31 3k9g_A PF-32 protein; ssgcid, 99.4 1.4E-12 4.7E-17 116.2 10.5 169 8-193 15-209 (267)
32 2wji_A Ferrous iron transport 99.4 1.8E-12 6.2E-17 106.9 10.2 114 115-265 50-164 (165)
33 1mky_A Probable GTP-binding pr 99.4 3E-12 1E-16 122.8 13.1 118 114-267 48-167 (439)
34 3bfv_A CAPA1, CAPB2, membrane 99.4 7.5E-12 2.6E-16 113.0 15.0 159 17-193 80-256 (271)
35 2fn4_A P23, RAS-related protei 99.4 4.5E-12 1.5E-16 104.4 12.4 114 115-265 57-171 (181)
36 2afh_E Nitrogenase iron protei 99.4 4.1E-12 1.4E-16 114.7 13.2 45 18-62 1-46 (289)
37 3q9l_A Septum site-determining 99.4 3.1E-12 1.1E-16 112.8 12.1 40 20-59 3-44 (260)
38 2gj8_A MNME, tRNA modification 99.4 2.1E-12 7.3E-17 107.6 10.5 113 116-269 53-169 (172)
39 3dm5_A SRP54, signal recogniti 99.4 5.3E-12 1.8E-16 121.6 14.6 154 18-197 99-255 (443)
40 1r2q_A RAS-related protein RAB 99.4 6.5E-12 2.2E-16 102.2 13.1 113 115-266 55-169 (170)
41 3tkl_A RAS-related protein RAB 99.4 4.8E-12 1.7E-16 106.1 12.7 112 115-265 65-178 (196)
42 1upt_A ARL1, ADP-ribosylation 99.4 6.5E-12 2.2E-16 102.7 12.9 118 115-266 51-169 (171)
43 2fg5_A RAB-22B, RAS-related pr 99.4 8.1E-12 2.8E-16 105.3 13.8 119 115-270 72-190 (192)
44 1ek0_A Protein (GTP-binding pr 99.4 2.9E-12 9.7E-17 104.3 10.5 115 115-265 52-168 (170)
45 1cp2_A CP2, nitrogenase iron p 99.4 3.4E-12 1.2E-16 113.5 11.8 42 20-61 2-44 (269)
46 1ksh_A ARF-like protein 2; sma 99.4 7.1E-12 2.4E-16 104.5 12.9 120 114-267 61-181 (186)
47 1z2a_A RAS-related protein RAB 99.4 9.3E-12 3.2E-16 101.2 13.2 110 115-264 54-165 (168)
48 3bwd_D RAC-like GTP-binding pr 99.4 6.3E-12 2.2E-16 104.0 12.4 122 115-265 56-180 (182)
49 2y8e_A RAB-protein 6, GH09086P 99.4 5.7E-12 1.9E-16 103.6 12.0 113 115-266 63-177 (179)
50 2ce2_X GTPase HRAS; signaling 99.4 1.2E-11 4.3E-16 99.7 13.6 111 115-265 51-164 (166)
51 2g6b_A RAS-related protein RAB 99.4 4.7E-12 1.6E-16 104.6 11.0 111 115-265 60-173 (180)
52 2qu8_A Putative nucleolar GTP- 99.3 1.6E-11 5.6E-16 106.6 14.9 123 115-264 76-203 (228)
53 3a1s_A Iron(II) transport prot 99.3 7.7E-12 2.6E-16 112.0 13.1 116 114-265 51-166 (258)
54 1z0j_A RAB-22, RAS-related pro 99.3 4.5E-12 1.5E-16 103.4 10.6 112 115-265 55-168 (170)
55 4bas_A ADP-ribosylation factor 99.3 9E-12 3.1E-16 104.7 12.7 119 114-265 62-188 (199)
56 2efe_B Small GTP-binding prote 99.3 1.4E-11 4.7E-16 101.8 13.6 115 115-268 61-177 (181)
57 2erx_A GTP-binding protein DI- 99.3 1.4E-11 4.9E-16 100.3 13.5 113 115-266 51-167 (172)
58 1u8z_A RAS-related protein RAL 99.3 9.9E-12 3.4E-16 100.7 12.4 110 115-264 52-165 (168)
59 1g16_A RAS-related protein SEC 99.3 2.3E-11 8E-16 99.0 14.6 112 115-266 52-165 (170)
60 1z08_A RAS-related protein RAB 99.3 1.8E-11 6.1E-16 99.9 13.8 112 115-265 55-168 (170)
61 4dcu_A GTP-binding protein ENG 99.3 4.6E-12 1.6E-16 122.1 11.9 161 19-267 23-186 (456)
62 1ky3_A GTP-binding protein YPT 99.3 2.2E-11 7.5E-16 100.3 14.4 113 115-264 58-176 (182)
63 2ph1_A Nucleotide-binding prot 99.3 9.9E-12 3.4E-16 110.8 13.1 158 19-193 18-194 (262)
64 4dsu_A GTPase KRAS, isoform 2B 99.3 1.3E-11 4.5E-16 102.4 12.8 111 116-266 53-166 (189)
65 1g3q_A MIND ATPase, cell divis 99.3 2.1E-11 7.2E-16 106.1 14.6 156 20-194 3-176 (237)
66 3b1v_A Ferrous iron uptake tra 99.3 9.1E-12 3.1E-16 112.6 12.6 117 115-267 49-165 (272)
67 2il1_A RAB12; G-protein, GDP, 99.3 6.3E-12 2.1E-16 106.2 10.7 112 115-264 75-188 (192)
68 2qm8_A GTPase/ATPase; G protei 99.3 3.3E-11 1.1E-15 112.1 16.6 199 15-265 51-260 (337)
69 3k53_A Ferrous iron transport 99.3 1.2E-11 4E-16 111.0 13.0 118 114-267 49-167 (271)
70 3con_A GTPase NRAS; structural 99.3 2.7E-11 9.1E-16 101.3 14.4 113 115-265 69-182 (190)
71 2a9k_A RAS-related protein RAL 99.3 1.7E-11 5.9E-16 101.4 13.0 110 115-264 66-179 (187)
72 2gf0_A GTP-binding protein DI- 99.3 2.8E-11 9.6E-16 101.6 14.5 112 115-267 56-172 (199)
73 3t1o_A Gliding protein MGLA; G 99.3 2.1E-11 7.3E-16 101.7 13.6 113 115-264 74-190 (198)
74 1r8s_A ADP-ribosylation factor 99.3 2.2E-11 7.7E-16 98.9 13.3 118 114-265 43-161 (164)
75 3clv_A RAB5 protein, putative; 99.3 2E-11 6.9E-16 101.9 13.2 108 115-264 93-202 (208)
76 1mh1_A RAC1; GTP-binding, GTPa 99.3 1.3E-11 4.4E-16 102.3 11.8 130 115-268 53-182 (186)
77 3fwy_A Light-independent proto 99.3 1.9E-11 6.6E-16 112.8 14.0 45 17-61 46-91 (314)
78 1vg8_A RAS-related protein RAB 99.3 2E-11 6.9E-16 103.3 13.0 113 115-266 57-175 (207)
79 1z06_A RAS-related protein RAB 99.3 8.7E-12 3E-16 104.6 10.6 113 115-266 69-188 (189)
80 3q85_A GTP-binding protein REM 99.3 5.9E-12 2E-16 102.9 9.3 111 115-264 51-165 (169)
81 1moz_A ARL1, ADP-ribosylation 99.3 1.1E-11 3.9E-16 102.6 11.1 117 115-265 62-179 (183)
82 1zd9_A ADP-ribosylation factor 99.3 2.8E-11 9.5E-16 101.7 13.6 118 114-266 66-185 (188)
83 2wjg_A FEOB, ferrous iron tran 99.3 2.1E-11 7E-16 101.7 12.7 117 115-268 54-171 (188)
84 3cio_A ETK, tyrosine-protein k 99.3 1E-11 3.6E-16 113.6 11.8 159 18-194 103-279 (299)
85 2p5s_A RAS and EF-hand domain 99.3 2.6E-11 8.8E-16 102.8 13.4 118 115-265 77-196 (199)
86 3la6_A Tyrosine-protein kinase 99.3 9.7E-12 3.3E-16 113.3 11.3 159 18-194 91-267 (286)
87 1hyq_A MIND, cell division inh 99.3 4.1E-11 1.4E-15 106.1 15.1 39 21-59 4-44 (263)
88 3bc1_A RAS-related protein RAB 99.3 3.2E-11 1.1E-15 100.3 13.3 112 115-265 70-184 (195)
89 2c78_A Elongation factor TU-A; 99.3 1.8E-11 6.2E-16 116.2 13.2 117 114-267 74-213 (405)
90 2o52_A RAS-related protein RAB 99.3 1.3E-11 4.3E-16 105.1 10.9 112 115-265 74-187 (200)
91 3cph_A RAS-related protein SEC 99.3 2.4E-11 8.2E-16 103.3 12.6 112 115-266 69-182 (213)
92 2a5j_A RAS-related protein RAB 99.3 2.3E-11 8E-16 102.2 12.4 111 115-264 70-182 (191)
93 2x77_A ADP-ribosylation factor 99.3 3.7E-12 1.3E-16 106.7 7.4 119 114-266 65-184 (189)
94 2lkc_A Translation initiation 99.3 6.5E-11 2.2E-15 97.4 14.8 114 115-265 55-170 (178)
95 4djt_A GTP-binding nuclear pro 99.3 1.2E-11 4E-16 106.1 10.5 120 115-271 61-180 (218)
96 2gf9_A RAS-related protein RAB 99.3 3.1E-11 1.1E-15 101.2 12.9 112 115-265 71-184 (189)
97 2bcg_Y Protein YP2, GTP-bindin 99.3 2.2E-11 7.5E-16 103.5 12.0 113 115-266 57-171 (206)
98 2bov_A RAla, RAS-related prote 99.3 4.1E-11 1.4E-15 101.2 13.5 111 115-265 62-176 (206)
99 2hup_A RAS-related protein RAB 99.3 3.2E-11 1.1E-15 102.7 12.7 112 115-265 78-192 (201)
100 2ew1_A RAS-related protein RAB 99.3 3.3E-11 1.1E-15 103.3 12.8 112 115-265 75-188 (201)
101 3oes_A GTPase rhebl1; small GT 99.3 2.5E-11 8.6E-16 103.0 11.9 115 114-267 71-188 (201)
102 2bme_A RAB4A, RAS-related prot 99.3 1.9E-11 6.4E-16 101.6 10.9 112 115-265 59-172 (186)
103 2oil_A CATX-8, RAS-related pro 99.3 1.3E-11 4.6E-16 103.6 10.1 111 115-264 74-186 (193)
104 1x3s_A RAS-related protein RAB 99.3 2E-11 7E-16 102.0 10.9 117 115-271 64-183 (195)
105 1j8m_F SRP54, signal recogniti 99.3 4.6E-11 1.6E-15 109.5 14.0 42 19-60 98-140 (297)
106 3cwq_A Para family chromosome 99.3 2.4E-11 8.3E-16 105.1 11.6 127 22-194 3-133 (209)
107 3sjy_A Translation initiation 99.3 1E-10 3.5E-15 111.0 16.9 115 115-267 75-193 (403)
108 3kkq_A RAS-related protein M-R 99.3 4.8E-11 1.6E-15 99.0 12.8 110 116-264 67-180 (183)
109 1d2e_A Elongation factor TU (E 99.3 5.6E-11 1.9E-15 112.7 14.7 116 114-266 65-195 (397)
110 4gzl_A RAS-related C3 botulinu 99.3 2.9E-11 9.8E-16 103.3 11.5 122 116-264 79-203 (204)
111 3tw8_B RAS-related protein RAB 99.3 2.1E-11 7.1E-16 100.3 10.3 111 115-265 58-170 (181)
112 2hxs_A RAB-26, RAS-related pro 99.3 1.8E-10 6.3E-15 94.7 15.7 114 115-267 56-174 (178)
113 2gco_A H9, RHO-related GTP-bin 99.3 5.4E-11 1.8E-15 101.1 12.8 122 115-264 73-198 (201)
114 2xtp_A GTPase IMAP family memb 99.3 8.5E-12 2.9E-16 110.7 8.1 133 114-268 70-210 (260)
115 2h57_A ADP-ribosylation factor 99.3 3.9E-11 1.3E-15 100.6 11.6 114 114-265 66-186 (190)
116 3ug7_A Arsenical pump-driving 99.3 1E-09 3.5E-14 102.4 22.4 43 17-59 24-67 (349)
117 4dcu_A GTP-binding protein ENG 99.3 2.2E-11 7.5E-16 117.4 11.3 120 114-265 242-368 (456)
118 3j2k_7 ERF3, eukaryotic polype 99.3 3.2E-11 1.1E-15 116.0 12.4 110 114-257 94-216 (439)
119 1m2o_B GTP-binding protein SAR 99.3 9.6E-11 3.3E-15 98.9 14.0 120 115-263 67-189 (190)
120 1zbd_A Rabphilin-3A; G protein 99.3 2.7E-11 9.2E-16 102.5 10.5 110 115-264 57-169 (203)
121 3t5g_A GTP-binding protein RHE 99.3 4.4E-11 1.5E-15 99.1 11.6 114 115-267 54-170 (181)
122 2atv_A RERG, RAS-like estrogen 99.2 1.3E-10 4.4E-15 98.0 14.5 110 115-264 76-189 (196)
123 2iwr_A Centaurin gamma 1; ANK 99.2 8.3E-11 2.9E-15 97.1 13.0 109 115-264 54-167 (178)
124 3gee_A MNME, tRNA modification 99.2 1.8E-11 6E-16 119.1 10.3 116 114-265 280-397 (476)
125 3dz8_A RAS-related protein RAB 99.2 2.1E-11 7.2E-16 102.5 9.4 111 114-264 71-184 (191)
126 3cpj_B GTP-binding protein YPT 99.2 5.9E-11 2E-15 102.6 12.4 114 115-267 62-177 (223)
127 3q72_A GTP-binding protein RAD 99.2 8.9E-12 3.1E-16 101.5 6.8 110 115-264 49-162 (166)
128 2cxx_A Probable GTP-binding pr 99.2 1.1E-10 3.8E-15 97.0 13.5 121 116-266 45-184 (190)
129 3zq6_A Putative arsenical pump 99.2 5.3E-10 1.8E-14 103.1 19.2 47 13-59 7-55 (324)
130 2b6h_A ADP-ribosylation factor 99.2 2.4E-11 8.1E-16 102.9 9.2 118 114-265 72-190 (192)
131 2fv8_A H6, RHO-related GTP-bin 99.2 9.6E-11 3.3E-15 100.0 13.0 126 115-264 73-198 (207)
132 2h17_A ADP-ribosylation factor 99.2 8.5E-11 2.9E-15 97.9 12.4 116 114-263 64-180 (181)
133 3reg_A RHO-like small GTPase; 99.2 8.5E-11 2.9E-15 98.8 12.2 118 115-266 71-188 (194)
134 3lxx_A GTPase IMAP family memb 99.2 5E-11 1.7E-15 104.5 11.2 130 114-266 77-214 (239)
135 2nzj_A GTP-binding protein REM 99.2 1E-10 3.6E-15 95.7 12.4 114 115-265 52-168 (175)
136 1jwy_B Dynamin A GTPase domain 99.2 3.7E-11 1.3E-15 109.1 10.6 123 114-271 130-267 (315)
137 3ez9_A Para; DNA binding, wing 99.2 7.7E-11 2.6E-15 111.6 12.9 44 17-60 109-160 (403)
138 2hjg_A GTP-binding protein ENG 99.2 2.7E-11 9.1E-16 116.2 9.8 122 114-265 222-348 (436)
139 3lxw_A GTPase IMAP family memb 99.2 4.3E-11 1.5E-15 106.3 10.3 132 114-266 69-208 (247)
140 2fh5_B SR-beta, signal recogni 99.2 2.6E-10 8.8E-15 97.3 14.9 135 115-263 54-213 (214)
141 3pg5_A Uncharacterized protein 99.2 5.9E-11 2E-15 111.2 11.0 42 20-61 2-45 (361)
142 2j0v_A RAC-like GTP-binding pr 99.2 1.4E-10 4.6E-15 99.0 12.2 122 115-267 57-181 (212)
143 3ihw_A Centg3; RAS, centaurin, 99.2 1.3E-10 4.6E-15 97.6 11.9 109 115-264 67-178 (184)
144 3geh_A MNME, tRNA modification 99.2 7.8E-11 2.7E-15 114.2 11.8 113 114-268 271-386 (462)
145 2fu5_C RAS-related protein RAB 99.2 4.8E-11 1.6E-15 99.0 8.9 112 115-265 57-170 (183)
146 2j1l_A RHO-related GTP-binding 99.2 1.2E-10 4.2E-15 100.1 11.7 123 115-265 82-208 (214)
147 1fzq_A ADP-ribosylation factor 99.2 1.3E-10 4.4E-15 97.2 11.6 117 115-265 60-177 (181)
148 3kl4_A SRP54, signal recogniti 99.2 1.2E-10 4E-15 112.0 12.5 154 18-195 96-252 (433)
149 1wb1_A Translation elongation 99.2 1.5E-10 5.1E-15 112.7 13.4 114 114-265 72-188 (482)
150 3fkq_A NTRC-like two-domain pr 99.2 1.3E-10 4.4E-15 109.2 12.5 110 17-127 141-272 (373)
151 1f6b_A SAR1; gtpases, N-termin 99.2 8.1E-11 2.8E-15 100.1 10.1 124 115-264 69-197 (198)
152 2e87_A Hypothetical protein PH 99.2 2.9E-10 1E-14 106.1 14.6 118 115-265 214-335 (357)
153 3gj0_A GTP-binding nuclear pro 99.2 4.4E-11 1.5E-15 103.0 8.2 115 115-271 64-180 (221)
154 3ez2_A Plasmid partition prote 99.2 1.4E-10 4.8E-15 109.6 12.4 43 17-59 106-156 (398)
155 3c5c_A RAS-like protein 12; GD 99.2 4.4E-10 1.5E-14 94.4 14.1 110 115-264 69-184 (187)
156 2atx_A Small GTP binding prote 99.2 2.5E-10 8.7E-15 95.8 12.4 123 115-264 66-191 (194)
157 3cbq_A GTP-binding protein REM 99.2 2.4E-10 8E-15 97.1 12.2 113 115-266 72-188 (195)
158 3o47_A ADP-ribosylation factor 99.2 5.3E-11 1.8E-15 110.1 8.8 120 114-266 208-327 (329)
159 2q3h_A RAS homolog gene family 99.2 1.2E-10 4.1E-15 98.3 10.3 123 116-265 69-194 (201)
160 1mky_A Probable GTP-binding pr 99.2 5.4E-10 1.8E-14 107.2 16.0 120 115-266 228-355 (439)
161 3q3j_B RHO-related GTP-binding 99.2 2.1E-10 7.3E-15 98.8 11.9 129 115-267 75-204 (214)
162 1m7b_A RND3/RHOE small GTP-bin 99.2 1.8E-10 6.2E-15 96.2 11.1 123 115-264 55-181 (184)
163 2ffh_A Protein (FFH); SRP54, s 99.2 1.8E-10 6.1E-15 110.6 12.4 152 18-194 97-250 (425)
164 3t5d_A Septin-7; GTP-binding p 99.2 5.6E-11 1.9E-15 106.8 8.3 88 149-267 117-205 (274)
165 3zvr_A Dynamin-1; hydrolase, D 99.2 7.8E-11 2.7E-15 120.2 10.3 124 114-270 149-285 (772)
166 2f7s_A C25KG, RAS-related prot 99.1 6.9E-11 2.4E-15 101.2 8.1 113 114-266 83-199 (217)
167 2hf9_A Probable hydrogenase ni 99.1 1.9E-10 6.3E-15 99.2 10.8 176 18-264 37-222 (226)
168 3iqw_A Tail-anchored protein t 99.1 1.9E-09 6.5E-14 100.3 18.4 42 18-59 15-57 (334)
169 3lvq_E ARF-GAP with SH3 domain 99.1 4.4E-10 1.5E-14 108.9 14.6 124 114-271 365-489 (497)
170 3p26_A Elongation factor 1 alp 99.1 1.3E-10 4.4E-15 112.9 10.7 105 114-255 110-227 (483)
171 2aka_B Dynamin-1; fusion prote 99.1 1.8E-10 6.2E-15 103.5 10.8 119 115-263 125-250 (299)
172 2yc2_C IFT27, small RAB-relate 99.1 1.7E-10 5.8E-15 97.3 9.9 110 116-264 74-190 (208)
173 1gwn_A RHO-related GTP-binding 99.1 2.5E-10 8.7E-15 97.9 11.1 125 115-263 76-201 (205)
174 3qq5_A Small GTP-binding prote 99.1 5.5E-11 1.9E-15 114.1 7.4 113 116-267 84-197 (423)
175 3izq_1 HBS1P, elongation facto 99.1 2.3E-10 7.8E-15 114.5 12.1 104 114-256 244-362 (611)
176 3tr5_A RF-3, peptide chain rel 99.1 7.5E-11 2.6E-15 116.1 8.4 67 114-195 81-148 (528)
177 4dkx_A RAS-related protein RAB 99.1 4.8E-10 1.6E-14 97.9 12.5 113 116-268 63-178 (216)
178 1g7s_A Translation initiation 99.1 7.4E-10 2.5E-14 110.4 15.3 128 116-265 71-217 (594)
179 3llu_A RAS-related GTP-binding 99.1 1.2E-09 4.2E-14 92.2 14.6 127 114-264 68-195 (196)
180 2qtf_A Protein HFLX, GTP-bindi 99.1 3.8E-10 1.3E-14 106.1 12.3 131 115-269 226-357 (364)
181 2xj4_A MIPZ; replication, cell 99.1 5.5E-11 1.9E-15 107.5 6.2 41 20-60 5-48 (286)
182 3mca_A HBS1, elongation factor 99.1 2.6E-11 8.9E-16 120.9 4.4 114 114-265 254-396 (592)
183 1dar_A EF-G, elongation factor 99.1 1.2E-09 4.1E-14 110.7 16.6 206 17-269 10-285 (691)
184 1xzp_A Probable tRNA modificat 99.1 2.9E-10 1E-14 110.7 11.7 112 114-265 290-404 (482)
185 2elf_A Protein translation elo 99.1 9E-10 3.1E-14 103.8 14.1 113 114-266 59-180 (370)
186 1zu4_A FTSY; GTPase, signal re 99.1 7.5E-10 2.5E-14 102.4 13.1 44 16-59 102-146 (320)
187 3th5_A RAS-related C3 botulinu 98.7 9.1E-12 3.1E-16 105.9 0.0 124 115-263 78-202 (204)
188 3l0i_B RAS-related protein RAB 99.1 3.4E-11 1.2E-15 102.0 3.2 115 115-266 82-196 (199)
189 1udx_A The GTP-binding protein 99.1 7.2E-10 2.5E-14 106.1 12.4 121 115-269 205-328 (416)
190 1f60_A Elongation factor EEF1A 99.1 4.8E-09 1.6E-13 101.3 17.8 109 114-254 84-200 (458)
191 3avx_A Elongation factor TS, e 99.1 2.3E-09 7.7E-14 113.3 16.5 115 114-266 358-486 (1289)
192 1pui_A ENGB, probable GTP-bind 99.1 2.5E-09 8.4E-14 90.8 13.9 123 116-268 73-201 (210)
193 1nrj_B SR-beta, signal recogni 99.1 1.5E-09 5E-14 92.9 12.4 78 114-197 54-136 (218)
194 2xex_A Elongation factor G; GT 99.1 2.1E-09 7.2E-14 108.9 15.5 141 114-269 74-283 (693)
195 1ls1_A Signal recognition part 99.1 8.2E-10 2.8E-14 100.9 11.3 152 18-195 97-251 (295)
196 1kk1_A EIF2gamma; initiation o 99.1 2.7E-09 9.1E-14 101.3 15.3 115 115-267 83-201 (410)
197 2j69_A Bacterial dynamin-like 99.1 1.5E-09 5.2E-14 110.0 14.2 129 115-265 174-324 (695)
198 1s0u_A EIF-2-gamma, translatio 99.1 6.5E-09 2.2E-13 98.7 17.8 113 115-266 81-198 (408)
199 2ywe_A GTP-binding protein LEP 99.0 3.5E-09 1.2E-13 105.6 16.3 111 115-267 73-185 (600)
200 2wkq_A NPH1-1, RAS-related C3 99.0 8.2E-10 2.8E-14 100.1 10.8 126 116-265 204-329 (332)
201 3izy_P Translation initiation 99.0 6.7E-10 2.3E-14 109.5 10.6 117 114-266 51-168 (537)
202 2h5e_A Peptide chain release f 99.0 5.6E-10 1.9E-14 109.8 9.9 137 17-196 11-149 (529)
203 2rdo_7 EF-G, elongation factor 99.0 5.4E-09 1.8E-13 106.1 17.3 137 16-195 7-148 (704)
204 3cb4_D GTP-binding protein LEP 99.0 2.5E-09 8.6E-14 106.7 14.4 112 115-266 71-182 (599)
205 1zun_B Sulfate adenylate trans 99.0 9.3E-09 3.2E-13 98.4 17.7 105 114-255 103-213 (434)
206 2g3y_A GTP-binding protein GEM 99.0 2.2E-09 7.4E-14 93.2 12.0 113 115-265 87-202 (211)
207 3r7w_A Gtpase1, GTP-binding pr 99.0 2.4E-09 8.3E-14 97.9 12.8 128 114-267 51-183 (307)
208 3dpu_A RAB family protein; roc 99.0 8.9E-10 3E-14 108.1 10.1 115 114-269 97-211 (535)
209 2x2e_A Dynamin-1; nitration, h 99.0 5.3E-10 1.8E-14 104.2 7.2 119 115-262 130-254 (353)
210 1jny_A EF-1-alpha, elongation 99.0 1.1E-09 3.9E-14 104.9 9.6 120 114-263 83-222 (435)
211 1byi_A Dethiobiotin synthase; 99.0 8.5E-09 2.9E-13 88.8 14.2 39 21-61 3-43 (224)
212 2cjw_A GTP-binding protein GEM 99.0 3.9E-09 1.3E-13 89.3 11.6 110 116-264 57-170 (192)
213 3io3_A DEHA2D07832P; chaperone 99.0 2.7E-08 9.3E-13 93.0 18.3 42 18-59 17-61 (348)
214 2woj_A ATPase GET3; tail-ancho 99.0 5.2E-08 1.8E-12 91.1 19.8 42 18-59 17-61 (354)
215 1wxq_A GTP-binding protein; st 98.9 1.2E-10 4.2E-15 110.7 0.7 67 180-275 213-280 (397)
216 1vma_A Cell division protein F 98.9 1.6E-08 5.4E-13 93.0 14.5 43 17-59 102-145 (306)
217 2ged_A SR-beta, signal recogni 98.9 2E-08 6.9E-13 83.8 13.3 77 114-197 90-172 (193)
218 2zej_A Dardarin, leucine-rich 98.9 1.7E-09 5.9E-14 90.4 6.6 118 114-266 55-178 (184)
219 1ihu_A Arsenical pump-driving 98.9 2.2E-08 7.4E-13 99.3 15.5 42 18-59 7-49 (589)
220 1zo1_I IF2, translation initia 98.9 3.5E-09 1.2E-13 103.5 9.6 112 114-262 50-163 (501)
221 2dy1_A Elongation factor G; tr 98.9 4.3E-08 1.5E-12 98.9 16.8 67 114-194 73-139 (665)
222 3t34_A Dynamin-related protein 98.9 5.7E-09 1.9E-13 97.3 9.4 78 114-197 135-219 (360)
223 2woo_A ATPase GET3; tail-ancho 98.9 7E-09 2.4E-13 95.9 9.6 42 18-59 18-60 (329)
224 1r5b_A Eukaryotic peptide chai 98.8 1.2E-08 4.2E-13 98.7 11.5 103 114-255 120-241 (467)
225 2px0_A Flagellar biosynthesis 98.8 1.8E-08 6.2E-13 92.1 11.8 43 17-59 103-147 (296)
226 2f9l_A RAB11B, member RAS onco 98.8 2.1E-08 7.2E-13 84.8 10.2 113 116-265 55-167 (199)
227 4a9a_A Ribosome-interacting GT 98.8 3E-08 1E-12 93.7 12.1 120 18-193 71-194 (376)
228 3j25_A Tetracycline resistance 98.8 1.6E-08 5.5E-13 101.5 10.1 140 114-268 66-241 (638)
229 3def_A T7I23.11 protein; chlor 98.8 4.1E-08 1.4E-12 87.4 11.1 23 18-40 35-58 (262)
230 1ihu_A Arsenical pump-driving 98.7 4.4E-07 1.5E-11 89.8 19.1 43 18-60 326-369 (589)
231 3vqt_A RF-3, peptide chain rel 98.7 2.3E-07 7.7E-12 91.6 16.2 67 114-195 99-166 (548)
232 4fn5_A EF-G 1, elongation fact 98.7 3.8E-07 1.3E-11 92.6 16.8 67 114-195 84-151 (709)
233 1h65_A Chloroplast outer envel 98.7 1.2E-07 4.1E-12 84.7 11.3 23 18-40 38-61 (270)
234 1oix_A RAS-related protein RAB 98.7 3.5E-07 1.2E-11 76.9 13.4 112 116-264 79-190 (191)
235 2dby_A GTP-binding protein; GD 98.6 6.1E-07 2.1E-11 84.4 15.3 42 115-159 69-111 (368)
236 2qag_A Septin-2, protein NEDD5 98.6 1.6E-08 5.4E-13 94.8 3.9 87 149-266 147-237 (361)
237 2qpt_A EH domain-containing pr 98.6 3.2E-08 1.1E-12 97.7 6.3 77 116-201 155-237 (550)
238 3c5h_A Glucocorticoid receptor 98.6 3.5E-07 1.2E-11 81.0 12.3 88 148-264 163-253 (255)
239 2r8r_A Sensor protein; KDPD, P 98.6 5.4E-08 1.8E-12 85.8 6.2 44 17-60 4-48 (228)
240 3igf_A ALL4481 protein; two-do 98.6 1.2E-07 4.2E-12 89.4 8.9 40 19-59 2-42 (374)
241 3e70_C DPA, signal recognition 98.5 2.6E-06 8.7E-11 78.9 15.8 42 17-58 127-169 (328)
242 2yhs_A FTSY, cell division pro 98.4 1.5E-06 5E-11 84.8 12.5 44 15-58 289-333 (503)
243 2qnr_A Septin-2, protein NEDD5 98.4 9.5E-07 3.2E-11 80.6 9.7 84 149-264 128-212 (301)
244 1jal_A YCHF protein; nucleotid 98.4 1.2E-05 4.1E-10 75.5 16.1 43 114-159 65-108 (363)
245 2qag_C Septin-7; cell cycle, c 98.3 9.9E-07 3.4E-11 84.3 8.2 88 149-267 140-228 (418)
246 3of5_A Dethiobiotin synthetase 98.3 5.5E-06 1.9E-10 72.6 11.8 163 17-193 2-181 (228)
247 1rj9_A FTSY, signal recognitio 98.3 2.9E-05 9.9E-10 71.0 16.3 41 18-58 101-142 (304)
248 3qxc_A Dethiobiotin synthetase 98.1 0.00014 4.8E-09 64.4 17.0 161 19-193 21-201 (242)
249 4fid_A G protein alpha subunit 98.1 8.9E-06 3.1E-10 75.7 9.2 25 240-264 302-326 (340)
250 1n0u_A EF-2, elongation factor 98.1 6.2E-06 2.1E-10 85.2 8.9 67 114-194 97-163 (842)
251 3r7w_B Gtpase2, GTP-binding pr 98.1 5.3E-05 1.8E-09 70.2 13.4 121 115-264 46-172 (331)
252 1puj_A YLQF, conserved hypothe 98.0 6E-06 2E-10 74.7 6.7 100 121-265 5-105 (282)
253 1tq4_A IIGP1, interferon-induc 98.0 2.1E-05 7.2E-10 75.0 10.7 127 116-271 121-258 (413)
254 2ohf_A Protein OLA1, GTP-bindi 98.0 2.8E-06 9.7E-11 80.6 3.3 30 11-40 14-44 (396)
255 2xtz_A Guanine nucleotide-bind 97.9 3.7E-05 1.3E-09 71.8 9.9 29 13-41 3-32 (354)
256 1azs_C GS-alpha; complex (lyas 97.9 0.00017 5.8E-09 68.5 13.9 25 240-264 359-383 (402)
257 3ohm_A Guanine nucleotide-bind 97.9 3E-05 1E-09 71.7 7.9 25 240-264 292-316 (327)
258 1xp8_A RECA protein, recombina 97.8 0.00018 6.2E-09 67.4 12.5 43 16-58 71-114 (366)
259 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 0.0006 2.1E-08 64.5 15.6 28 13-40 14-42 (392)
260 2yv5_A YJEQ protein; hydrolase 97.7 8.8E-05 3E-09 67.5 8.7 84 148-261 80-164 (302)
261 3hr8_A Protein RECA; alpha and 97.7 0.00026 9.1E-09 66.1 11.7 43 16-58 58-101 (356)
262 3h2y_A GTPase family protein; 97.7 1.2E-06 4.1E-11 82.2 -4.8 78 115-197 211-289 (368)
263 1xjc_A MOBB protein homolog; s 97.7 5.7E-05 2E-09 63.4 5.8 40 19-58 4-44 (169)
264 1u94_A RECA protein, recombina 97.6 0.00012 4.3E-09 68.3 8.3 41 16-56 60-101 (356)
265 3fgn_A Dethiobiotin synthetase 97.6 0.0006 2E-08 60.6 12.2 40 18-59 25-66 (251)
266 3sop_A Neuronal-specific septi 97.6 0.00064 2.2E-08 60.9 12.2 24 20-43 3-27 (270)
267 3ec1_A YQEH GTPase; atnos1, at 97.6 5.2E-06 1.8E-10 77.8 -1.9 76 115-197 212-290 (369)
268 3ec1_A YQEH GTPase; atnos1, at 97.6 0.00011 3.9E-09 68.6 7.3 84 149-265 73-161 (369)
269 3h2y_A GTPase family protein; 97.5 0.00022 7.4E-09 66.8 8.7 93 137-264 61-158 (368)
270 2yvu_A Probable adenylyl-sulfa 97.5 9.7E-05 3.3E-09 61.5 5.2 39 18-56 12-51 (186)
271 1u0l_A Probable GTPase ENGC; p 97.5 0.00035 1.2E-08 63.3 9.3 83 148-261 85-168 (301)
272 4a1f_A DNAB helicase, replicat 97.5 0.0011 3.7E-08 61.5 12.7 41 16-56 43-84 (338)
273 2zr9_A Protein RECA, recombina 97.5 0.00024 8.3E-09 66.0 8.2 42 16-57 58-100 (349)
274 1nks_A Adenylate kinase; therm 97.5 8.5E-05 2.9E-09 61.4 4.6 35 20-54 2-37 (194)
275 3szr_A Interferon-induced GTP- 97.5 0.00027 9.1E-09 70.4 8.9 31 11-42 38-69 (608)
276 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.0001 3.5E-09 65.3 5.3 40 18-57 3-43 (260)
277 3cnl_A YLQF, putative uncharac 97.3 8E-05 2.8E-09 66.5 2.9 84 137-263 14-98 (262)
278 1kht_A Adenylate kinase; phosp 97.3 0.00015 5.3E-09 59.8 4.4 36 20-55 4-40 (192)
279 3ec2_A DNA replication protein 97.3 0.00013 4.5E-09 60.3 3.8 46 8-53 25-74 (180)
280 1np6_A Molybdopterin-guanine d 97.3 0.00031 1.1E-08 59.0 5.7 40 19-58 6-46 (174)
281 2qag_B Septin-6, protein NEDD5 97.3 0.00035 1.2E-08 66.8 6.7 47 150-203 151-197 (427)
282 1rz3_A Hypothetical protein rb 97.3 0.00031 1E-08 59.5 5.4 43 16-58 19-62 (201)
283 2dr3_A UPF0273 protein PH0284; 97.2 0.00037 1.3E-08 59.8 5.7 50 5-57 12-62 (247)
284 1uj2_A Uridine-cytidine kinase 97.2 0.00028 9.5E-09 61.9 4.7 42 16-57 19-66 (252)
285 2cvh_A DNA repair and recombin 97.1 0.00057 1.9E-08 57.6 5.8 48 5-58 9-57 (220)
286 3b9q_A Chloroplast SRP recepto 97.1 0.00067 2.3E-08 61.8 6.4 43 16-58 97-140 (302)
287 1zcb_A G alpha I/13; GTP-bindi 97.1 0.00094 3.2E-08 62.4 7.4 131 115-264 201-351 (362)
288 3uie_A Adenylyl-sulfate kinase 97.1 0.00057 2E-08 57.6 5.2 40 17-56 23-63 (200)
289 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00066 2.2E-08 57.5 5.5 42 16-57 20-62 (235)
290 2w58_A DNAI, primosome compone 97.0 0.00053 1.8E-08 57.5 4.8 35 20-54 55-90 (202)
291 1m7g_A Adenylylsulfate kinase; 97.0 0.00055 1.9E-08 58.2 4.8 40 17-56 23-64 (211)
292 2og2_A Putative signal recogni 97.0 0.00092 3.2E-08 62.5 6.4 42 16-57 154-196 (359)
293 1a7j_A Phosphoribulokinase; tr 97.0 0.00041 1.4E-08 62.7 3.8 41 18-58 4-45 (290)
294 2z0h_A DTMP kinase, thymidylat 97.0 0.001 3.5E-08 55.1 6.0 34 21-54 2-36 (197)
295 2plr_A DTMP kinase, probable t 97.0 0.00077 2.6E-08 56.4 5.3 32 19-51 4-36 (213)
296 1nn5_A Similar to deoxythymidy 97.0 0.00081 2.8E-08 56.6 5.2 35 18-52 8-43 (215)
297 2bwj_A Adenylate kinase 5; pho 97.0 0.00024 8.2E-09 59.1 1.9 40 11-55 4-44 (199)
298 3c8u_A Fructokinase; YP_612366 96.9 0.0013 4.3E-08 55.9 6.4 42 16-57 19-61 (208)
299 3bos_A Putative DNA replicatio 96.9 0.00091 3.1E-08 56.7 5.4 39 18-56 51-90 (242)
300 2pbr_A DTMP kinase, thymidylat 96.9 0.0011 3.6E-08 54.8 5.4 33 21-53 2-35 (195)
301 2pez_A Bifunctional 3'-phospho 96.9 0.00098 3.4E-08 54.9 5.2 38 19-56 5-43 (179)
302 1ly1_A Polynucleotide kinase; 96.9 0.00075 2.6E-08 55.0 4.3 33 19-55 2-35 (181)
303 3umf_A Adenylate kinase; rossm 96.9 0.00075 2.6E-08 58.7 4.4 29 14-42 24-53 (217)
304 2qt1_A Nicotinamide riboside k 96.8 0.00064 2.2E-08 57.4 3.5 45 10-58 12-57 (207)
305 3kb2_A SPBC2 prophage-derived 96.8 0.00082 2.8E-08 54.4 4.1 23 20-42 2-25 (173)
306 1cip_A Protein (guanine nucleo 96.8 0.0036 1.2E-07 58.2 8.9 129 116-264 194-342 (353)
307 2wwf_A Thymidilate kinase, put 96.8 0.0013 4.6E-08 55.2 5.4 36 18-53 9-45 (212)
308 1qhx_A CPT, protein (chloramph 96.8 0.00095 3.3E-08 54.6 4.3 34 19-55 3-37 (178)
309 1tev_A UMP-CMP kinase; ploop, 96.8 0.00096 3.3E-08 55.0 4.3 33 18-55 2-35 (196)
310 2ehv_A Hypothetical protein PH 96.8 0.0021 7.2E-08 55.1 6.3 42 15-56 26-69 (251)
311 2rhm_A Putative kinase; P-loop 96.8 0.00088 3E-08 55.4 3.7 25 18-42 4-29 (193)
312 2p5t_B PEZT; postsegregational 96.7 0.00099 3.4E-08 58.5 4.0 46 7-56 21-67 (253)
313 3tqc_A Pantothenate kinase; bi 96.7 0.0017 6E-08 59.7 5.5 42 16-57 89-133 (321)
314 1jbk_A CLPB protein; beta barr 96.7 0.0019 6.5E-08 52.2 5.1 27 18-44 42-69 (195)
315 3vaa_A Shikimate kinase, SK; s 96.7 0.0011 3.8E-08 55.8 3.7 26 17-42 23-49 (199)
316 3t61_A Gluconokinase; PSI-biol 96.7 0.0011 3.8E-08 55.7 3.7 33 19-56 18-51 (202)
317 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.8E-08 54.6 3.6 24 19-42 5-29 (185)
318 1odf_A YGR205W, hypothetical 3 96.6 0.0014 4.8E-08 59.3 4.5 42 16-57 28-73 (290)
319 2zts_A Putative uncharacterize 96.6 0.0028 9.6E-08 54.2 6.2 51 4-57 18-70 (251)
320 2axn_A 6-phosphofructo-2-kinas 96.6 0.0016 5.6E-08 63.6 5.2 40 17-56 33-73 (520)
321 3t15_A Ribulose bisphosphate c 96.6 0.0018 6.1E-08 58.3 5.1 44 8-54 23-69 (293)
322 1cr0_A DNA primase/helicase; R 96.6 0.0025 8.4E-08 56.9 5.7 41 16-56 32-74 (296)
323 3asz_A Uridine kinase; cytidin 96.6 0.0023 7.7E-08 54.0 5.2 40 17-59 4-44 (211)
324 1gtv_A TMK, thymidylate kinase 96.6 0.0008 2.7E-08 56.7 2.3 34 21-54 2-36 (214)
325 2v54_A DTMP kinase, thymidylat 96.6 0.0013 4.4E-08 54.9 3.5 33 19-53 4-37 (204)
326 3bh0_A DNAB-like replicative h 96.6 0.0027 9.1E-08 57.8 5.9 40 16-55 65-105 (315)
327 1t9h_A YLOQ, probable GTPase E 96.6 0.0013 4.4E-08 60.2 3.6 46 148-197 87-133 (307)
328 2ze6_A Isopentenyl transferase 96.5 0.0021 7E-08 56.7 4.8 32 20-56 2-34 (253)
329 2kjq_A DNAA-related protein; s 96.5 0.0024 8.2E-08 51.8 4.9 36 19-54 36-72 (149)
330 2qgz_A Helicase loader, putati 96.5 0.0022 7.4E-08 58.3 4.9 36 19-54 152-189 (308)
331 2p65_A Hypothetical protein PF 96.5 0.0023 7.7E-08 51.9 4.4 26 19-44 43-69 (187)
332 1zp6_A Hypothetical protein AT 96.5 0.0018 6.3E-08 53.5 3.9 37 16-55 6-43 (191)
333 4eun_A Thermoresistant glucoki 96.5 0.0027 9.4E-08 53.4 5.0 34 18-56 28-62 (200)
334 3tlx_A Adenylate kinase 2; str 96.5 0.0018 6.2E-08 56.6 3.8 34 9-42 19-53 (243)
335 1qf9_A UMP/CMP kinase, protein 96.4 0.0017 6E-08 53.3 3.5 32 19-55 6-38 (194)
336 3d3q_A TRNA delta(2)-isopenten 96.4 0.0023 8E-08 59.3 4.7 34 19-57 7-41 (340)
337 1knq_A Gluconate kinase; ALFA/ 96.4 0.0033 1.1E-07 51.3 5.2 34 18-56 7-41 (175)
338 1zd8_A GTP:AMP phosphotransfer 96.4 0.0013 4.5E-08 56.4 2.8 28 15-42 3-31 (227)
339 2z43_A DNA repair and recombin 96.4 0.0023 7.7E-08 58.4 4.4 50 5-57 96-152 (324)
340 2rcn_A Probable GTPase ENGC; Y 96.4 0.0076 2.6E-07 56.2 8.0 53 179-260 158-213 (358)
341 2orw_A Thymidine kinase; TMTK, 96.4 0.0033 1.1E-07 52.8 5.0 34 20-53 4-38 (184)
342 2gks_A Bifunctional SAT/APS ki 96.4 0.0029 1E-07 62.2 5.4 41 16-56 369-410 (546)
343 2cdn_A Adenylate kinase; phosp 96.4 0.0023 7.9E-08 53.6 4.0 28 15-42 16-44 (201)
344 2c95_A Adenylate kinase 1; tra 96.4 0.0021 7.1E-08 53.2 3.6 25 18-42 8-33 (196)
345 3zvl_A Bifunctional polynucleo 96.4 0.0063 2.1E-07 57.6 7.4 34 18-56 257-291 (416)
346 3cm0_A Adenylate kinase; ATP-b 96.4 0.0025 8.5E-08 52.4 4.1 25 18-42 3-28 (186)
347 4eaq_A DTMP kinase, thymidylat 96.4 0.004 1.4E-07 54.0 5.5 34 18-52 25-59 (229)
348 1v5w_A DMC1, meiotic recombina 96.4 0.0037 1.3E-07 57.6 5.6 50 5-57 111-167 (343)
349 1n0w_A DNA repair protein RAD5 96.4 0.0031 1.1E-07 53.8 4.7 50 5-57 13-69 (243)
350 1gvn_B Zeta; postsegregational 96.4 0.0023 7.8E-08 57.6 4.0 38 15-55 29-67 (287)
351 3iij_A Coilin-interacting nucl 96.3 0.0024 8.2E-08 52.5 3.8 25 18-42 10-35 (180)
352 3lw7_A Adenylate kinase relate 96.3 0.0022 7.5E-08 51.4 3.3 18 21-38 3-21 (179)
353 3cmu_A Protein RECA, recombina 96.3 0.003 1E-07 70.4 5.4 51 5-58 1415-1467(2050)
354 1sq5_A Pantothenate kinase; P- 96.3 0.004 1.4E-07 56.4 5.3 42 17-58 78-122 (308)
355 1kag_A SKI, shikimate kinase I 96.3 0.0018 6.2E-08 52.6 2.7 23 20-42 5-28 (173)
356 2r2a_A Uncharacterized protein 96.3 0.0031 1.1E-07 53.9 4.2 37 19-55 5-48 (199)
357 2f1r_A Molybdopterin-guanine d 96.3 0.0032 1.1E-07 52.5 4.2 39 20-58 3-42 (171)
358 4edh_A DTMP kinase, thymidylat 96.3 0.0051 1.7E-07 53.0 5.5 37 20-57 7-44 (213)
359 1e6c_A Shikimate kinase; phosp 96.3 0.0023 8E-08 51.9 3.2 23 20-42 3-26 (173)
360 4a74_A DNA repair and recombin 96.3 0.0041 1.4E-07 52.5 4.9 49 5-56 14-69 (231)
361 1via_A Shikimate kinase; struc 96.3 0.0023 7.7E-08 52.5 3.1 22 21-42 6-28 (175)
362 1y63_A LMAJ004144AAA protein; 96.2 0.0028 9.7E-08 52.6 3.7 33 19-55 10-43 (184)
363 1aky_A Adenylate kinase; ATP:A 96.2 0.003 1E-07 53.8 3.9 24 19-42 4-28 (220)
364 3bgw_A DNAB-like replicative h 96.2 0.0047 1.6E-07 59.1 5.6 43 16-58 194-237 (444)
365 1nlf_A Regulatory protein REPA 96.2 0.0039 1.3E-07 55.3 4.8 40 16-55 27-77 (279)
366 1zak_A Adenylate kinase; ATP:A 96.2 0.0023 7.9E-08 54.6 3.0 26 18-43 4-30 (222)
367 1ukz_A Uridylate kinase; trans 96.2 0.0028 9.6E-08 53.0 3.4 34 17-55 13-47 (203)
368 2if2_A Dephospho-COA kinase; a 96.2 0.0024 8.2E-08 53.5 3.0 32 20-57 2-34 (204)
369 2iyv_A Shikimate kinase, SK; t 96.2 0.0021 7.2E-08 53.0 2.6 22 21-42 4-26 (184)
370 2bbw_A Adenylate kinase 4, AK4 96.2 0.0032 1.1E-07 54.7 3.9 25 18-42 26-51 (246)
371 2b8t_A Thymidine kinase; deoxy 96.2 0.0062 2.1E-07 53.1 5.6 34 20-53 13-47 (223)
372 2pt5_A Shikimate kinase, SK; a 96.2 0.0031 1.1E-07 51.0 3.4 22 21-42 2-24 (168)
373 1l8q_A Chromosomal replication 96.2 0.0035 1.2E-07 56.6 4.1 36 19-54 37-73 (324)
374 2jeo_A Uridine-cytidine kinase 96.2 0.0058 2E-07 53.1 5.4 42 15-56 21-68 (245)
375 3be4_A Adenylate kinase; malar 96.1 0.0033 1.1E-07 53.6 3.6 23 20-42 6-29 (217)
376 1uf9_A TT1252 protein; P-loop, 96.1 0.0028 9.7E-08 52.6 3.0 33 18-56 7-40 (203)
377 2qor_A Guanylate kinase; phosp 96.1 0.0025 8.6E-08 53.8 2.7 28 15-42 8-36 (204)
378 2r6a_A DNAB helicase, replicat 96.1 0.0067 2.3E-07 57.9 6.0 41 16-56 200-242 (454)
379 1xx6_A Thymidine kinase; NESG, 96.1 0.0069 2.4E-07 51.4 5.4 34 20-53 9-43 (191)
380 2vli_A Antibiotic resistance p 96.1 0.0022 7.5E-08 52.5 2.2 25 18-42 4-29 (183)
381 1g8f_A Sulfate adenylyltransfe 96.1 0.005 1.7E-07 60.1 5.1 49 8-56 384-435 (511)
382 2q6t_A DNAB replication FORK h 96.1 0.0067 2.3E-07 57.7 5.9 40 16-55 197-238 (444)
383 3lv8_A DTMP kinase, thymidylat 96.1 0.0071 2.4E-07 53.1 5.6 40 18-58 26-67 (236)
384 3sr0_A Adenylate kinase; phosp 96.1 0.0039 1.3E-07 53.5 3.7 22 21-42 2-24 (206)
385 3ld9_A DTMP kinase, thymidylat 96.0 0.0079 2.7E-07 52.4 5.6 41 19-59 21-63 (223)
386 1tue_A Replication protein E1; 96.0 0.0022 7.7E-08 55.6 2.0 27 16-42 55-82 (212)
387 2jaq_A Deoxyguanosine kinase; 96.0 0.0046 1.6E-07 51.2 3.8 23 21-43 2-25 (205)
388 1m8p_A Sulfate adenylyltransfe 96.0 0.0066 2.3E-07 60.0 5.4 38 18-55 395-434 (573)
389 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0038 1.3E-07 60.1 3.5 42 17-59 137-180 (460)
390 2chg_A Replication factor C sm 95.9 0.0047 1.6E-07 51.1 3.6 36 21-56 40-76 (226)
391 1x6v_B Bifunctional 3'-phospho 95.9 0.0058 2E-07 61.1 4.8 38 18-55 51-89 (630)
392 3crm_A TRNA delta(2)-isopenten 95.9 0.0051 1.7E-07 56.6 4.1 34 19-57 5-39 (323)
393 3v9p_A DTMP kinase, thymidylat 95.9 0.007 2.4E-07 52.8 4.8 39 18-57 24-67 (227)
394 1g5t_A COB(I)alamin adenosyltr 95.9 0.011 3.9E-07 50.5 6.0 41 18-58 28-68 (196)
395 3a8t_A Adenylate isopentenyltr 95.9 0.0073 2.5E-07 55.9 4.8 36 18-58 39-75 (339)
396 1bif_A 6-phosphofructo-2-kinas 95.8 0.0078 2.7E-07 57.7 5.2 39 17-55 37-76 (469)
397 1ltq_A Polynucleotide kinase; 95.8 0.0054 1.8E-07 54.6 3.7 33 19-55 2-35 (301)
398 3aez_A Pantothenate kinase; tr 95.8 0.012 4.2E-07 53.5 6.1 42 16-57 87-131 (312)
399 1q57_A DNA primase/helicase; d 95.8 0.0061 2.1E-07 58.8 4.2 41 16-56 239-281 (503)
400 3exa_A TRNA delta(2)-isopenten 95.8 0.01 3.5E-07 54.5 5.4 35 18-57 2-37 (322)
401 3fb4_A Adenylate kinase; psych 95.8 0.0063 2.2E-07 51.3 3.7 21 22-42 3-24 (216)
402 3io5_A Recombination and repai 95.8 0.0088 3E-07 55.2 4.9 35 21-55 30-67 (333)
403 1ak2_A Adenylate kinase isoenz 95.8 0.0066 2.3E-07 52.3 3.9 26 18-43 15-41 (233)
404 1jjv_A Dephospho-COA kinase; P 95.7 0.0052 1.8E-07 51.6 3.1 33 19-57 2-35 (206)
405 1fnn_A CDC6P, cell division co 95.7 0.011 3.9E-07 53.8 5.7 38 21-58 46-85 (389)
406 1e4v_A Adenylate kinase; trans 95.7 0.0061 2.1E-07 51.6 3.6 21 22-42 3-24 (214)
407 2qby_B CDC6 homolog 3, cell di 95.7 0.0092 3.1E-07 54.5 4.9 38 18-55 44-90 (384)
408 3n70_A Transport activator; si 95.7 0.0054 1.9E-07 49.0 2.8 35 20-55 25-60 (145)
409 4fcw_A Chaperone protein CLPB; 95.7 0.0096 3.3E-07 52.9 4.7 38 20-57 48-86 (311)
410 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.014 4.9E-07 50.3 5.6 36 17-55 37-73 (262)
411 2grj_A Dephospho-COA kinase; T 95.6 0.0092 3.1E-07 50.6 4.2 34 19-57 12-46 (192)
412 1vht_A Dephospho-COA kinase; s 95.6 0.0091 3.1E-07 50.6 4.2 32 18-55 3-35 (218)
413 2i1q_A DNA repair and recombin 95.6 0.0088 3E-07 54.1 4.2 42 16-57 95-153 (322)
414 1zuh_A Shikimate kinase; alpha 95.6 0.0086 2.9E-07 48.5 3.7 26 18-43 6-32 (168)
415 2qby_A CDC6 homolog 1, cell di 95.6 0.012 4E-07 53.4 5.0 39 18-56 44-86 (386)
416 3hjn_A DTMP kinase, thymidylat 95.6 0.015 5E-07 49.3 5.2 36 22-58 3-39 (197)
417 2v1u_A Cell division control p 95.6 0.01 3.4E-07 53.9 4.5 41 17-57 42-89 (387)
418 2j41_A Guanylate kinase; GMP, 95.6 0.0058 2E-07 50.9 2.7 25 18-42 5-30 (207)
419 3dl0_A Adenylate kinase; phosp 95.5 0.0068 2.3E-07 51.2 3.0 21 22-42 3-24 (216)
420 3foz_A TRNA delta(2)-isopenten 95.5 0.014 4.8E-07 53.5 5.3 36 18-58 9-45 (316)
421 3syl_A Protein CBBX; photosynt 95.5 0.013 4.5E-07 52.0 5.0 29 19-47 67-96 (309)
422 1c9k_A COBU, adenosylcobinamid 95.5 0.0069 2.4E-07 51.2 3.0 31 22-56 2-33 (180)
423 2xb4_A Adenylate kinase; ATP-b 95.5 0.0094 3.2E-07 51.1 3.8 22 21-42 2-24 (223)
424 2f6r_A COA synthase, bifunctio 95.5 0.0095 3.2E-07 53.2 3.9 35 17-57 73-108 (281)
425 1pzn_A RAD51, DNA repair and r 95.4 0.013 4.4E-07 54.2 4.9 42 15-56 127-175 (349)
426 1lv7_A FTSH; alpha/beta domain 95.4 0.016 5.3E-07 50.4 5.2 33 18-53 44-77 (257)
427 1cke_A CK, MSSA, protein (cyti 95.4 0.0099 3.4E-07 50.4 3.8 23 20-42 6-29 (227)
428 4tmk_A Protein (thymidylate ki 95.4 0.02 6.7E-07 49.3 5.6 37 21-58 5-43 (213)
429 1ofh_A ATP-dependent HSL prote 95.4 0.014 4.8E-07 51.5 4.8 36 18-56 49-85 (310)
430 3tau_A Guanylate kinase, GMP k 95.4 0.01 3.6E-07 50.2 3.7 25 18-42 7-32 (208)
431 3ake_A Cytidylate kinase; CMP 95.3 0.011 3.6E-07 49.3 3.6 30 21-55 4-34 (208)
432 1puj_A YLQF, conserved hypothe 95.3 0.019 6.5E-07 51.5 5.4 23 18-40 119-142 (282)
433 2z4s_A Chromosomal replication 95.3 0.012 4E-07 56.1 4.3 36 19-54 130-168 (440)
434 2vhj_A Ntpase P4, P4; non- hyd 95.3 0.0075 2.6E-07 55.7 2.7 33 19-54 123-156 (331)
435 1tf7_A KAIC; homohexamer, hexa 95.3 0.019 6.3E-07 55.8 5.6 47 5-54 270-317 (525)
436 1ixz_A ATP-dependent metallopr 95.3 0.016 5.4E-07 50.2 4.6 27 16-42 46-73 (254)
437 3lda_A DNA repair protein RAD5 95.2 0.014 4.6E-07 55.3 4.3 49 5-56 167-222 (400)
438 3r20_A Cytidylate kinase; stru 95.2 0.013 4.3E-07 51.4 3.8 25 18-42 8-33 (233)
439 2j9r_A Thymidine kinase; TK1, 95.2 0.025 8.4E-07 49.1 5.4 35 19-53 28-63 (214)
440 2bjv_A PSP operon transcriptio 95.1 0.013 4.3E-07 51.2 3.6 37 19-55 29-66 (265)
441 1kgd_A CASK, peripheral plasma 95.1 0.014 4.7E-07 48.2 3.6 23 20-42 6-29 (180)
442 3h4m_A Proteasome-activating n 95.1 0.02 6.9E-07 50.2 4.8 35 17-54 49-84 (285)
443 1xwi_A SKD1 protein; VPS4B, AA 95.1 0.021 7.3E-07 51.9 5.1 36 17-54 43-79 (322)
444 4hlc_A DTMP kinase, thymidylat 95.0 0.023 7.7E-07 48.6 4.8 36 21-58 4-40 (205)
445 4ag6_A VIRB4 ATPase, type IV s 95.0 0.024 8.2E-07 52.6 5.4 38 20-59 36-74 (392)
446 2bdt_A BH3686; alpha-beta prot 95.0 0.015 5E-07 48.1 3.4 21 20-40 3-24 (189)
447 3a00_A Guanylate kinase, GMP k 95.0 0.016 5.5E-07 48.0 3.6 38 20-57 2-41 (186)
448 4b4t_K 26S protease regulatory 95.0 0.021 7.1E-07 54.5 4.8 35 17-54 204-239 (428)
449 2ewv_A Twitching motility prot 94.9 0.033 1.1E-06 51.9 6.1 38 16-53 133-172 (372)
450 1iy2_A ATP-dependent metallopr 94.9 0.024 8.1E-07 50.0 4.7 27 16-42 70-97 (278)
451 3cr8_A Sulfate adenylyltranfer 94.9 0.018 6E-07 56.7 4.2 43 14-56 364-408 (552)
452 2eyu_A Twitching motility prot 94.9 0.043 1.5E-06 48.6 6.3 39 16-54 22-62 (261)
453 3cmw_A Protein RECA, recombina 94.8 0.024 8.1E-07 62.5 5.4 44 16-59 729-773 (1706)
454 3b9p_A CG5977-PA, isoform A; A 94.8 0.028 9.7E-07 49.6 5.1 34 18-54 53-87 (297)
455 2x8a_A Nuclear valosin-contain 94.8 0.029 9.9E-07 49.9 5.1 27 16-42 41-68 (274)
456 3tr0_A Guanylate kinase, GMP k 94.8 0.019 6.6E-07 47.6 3.7 24 19-42 7-31 (205)
457 1w5s_A Origin recognition comp 94.8 0.026 8.8E-07 51.9 4.9 40 18-57 49-97 (412)
458 3upu_A ATP-dependent DNA helic 94.8 0.029 9.9E-07 53.4 5.3 32 21-52 47-80 (459)
459 4b4t_L 26S protease subunit RP 94.8 0.026 8.8E-07 54.0 4.8 34 17-53 213-247 (437)
460 3cf0_A Transitional endoplasmi 94.7 0.027 9.2E-07 50.5 4.5 26 17-42 47-73 (301)
461 1ye8_A Protein THEP1, hypothet 94.7 0.023 8E-07 47.3 3.8 23 21-43 2-25 (178)
462 3e1s_A Exodeoxyribonuclease V, 94.6 0.031 1.1E-06 55.1 5.3 34 19-52 204-238 (574)
463 1d2n_A N-ethylmaleimide-sensit 94.6 0.038 1.3E-06 48.3 5.4 34 17-53 62-96 (272)
464 3eie_A Vacuolar protein sortin 94.6 0.037 1.3E-06 50.0 5.3 34 18-54 50-84 (322)
465 3hws_A ATP-dependent CLP prote 94.6 0.023 7.8E-07 52.2 4.0 34 18-54 50-84 (363)
466 2qp9_X Vacuolar protein sortin 94.6 0.034 1.2E-06 51.2 5.1 34 17-53 82-116 (355)
467 4b4t_M 26S protease regulatory 94.6 0.03 1E-06 53.5 4.8 35 17-54 213-248 (434)
468 2ocp_A DGK, deoxyguanosine kin 94.5 0.019 6.6E-07 49.5 3.1 26 18-43 1-27 (241)
469 1lvg_A Guanylate kinase, GMP k 94.5 0.021 7.1E-07 48.1 3.1 24 20-43 5-29 (198)
470 3d8b_A Fidgetin-like protein 1 94.5 0.037 1.3E-06 50.9 5.1 35 17-54 115-150 (357)
471 3eph_A TRNA isopentenyltransfe 94.5 0.036 1.2E-06 52.5 5.1 33 19-56 2-35 (409)
472 1njg_A DNA polymerase III subu 94.5 0.027 9.1E-07 46.9 3.7 26 20-45 46-72 (250)
473 3jvv_A Twitching mobility prot 94.4 0.044 1.5E-06 50.9 5.4 36 21-57 125-162 (356)
474 1um8_A ATP-dependent CLP prote 94.4 0.03 1E-06 51.5 4.2 34 19-55 72-106 (376)
475 2h92_A Cytidylate kinase; ross 94.4 0.019 6.6E-07 48.4 2.7 33 19-56 3-36 (219)
476 3cmw_A Protein RECA, recombina 94.4 0.039 1.3E-06 60.8 5.7 44 16-59 380-424 (1706)
477 4gp7_A Metallophosphoesterase; 94.3 0.034 1.1E-06 45.6 4.0 23 16-38 6-29 (171)
478 2qmh_A HPR kinase/phosphorylas 94.3 0.038 1.3E-06 47.6 4.4 32 19-56 34-66 (205)
479 4e22_A Cytidylate kinase; P-lo 94.3 0.025 8.7E-07 49.4 3.4 24 19-42 27-51 (252)
480 3bs4_A Uncharacterized protein 94.2 0.063 2.1E-06 47.8 5.8 49 4-55 9-58 (260)
481 3ney_A 55 kDa erythrocyte memb 94.1 0.036 1.2E-06 47.3 3.9 28 14-42 15-43 (197)
482 4b4t_J 26S protease regulatory 94.1 0.037 1.3E-06 52.5 4.2 34 17-53 180-214 (405)
483 1p9r_A General secretion pathw 94.1 0.046 1.6E-06 51.9 4.9 35 20-54 168-203 (418)
484 1znw_A Guanylate kinase, GMP k 94.1 0.029 9.9E-07 47.3 3.1 28 15-42 16-44 (207)
485 2i3b_A HCR-ntpase, human cance 94.1 0.035 1.2E-06 46.7 3.7 26 21-46 3-29 (189)
486 1sxj_A Activator 1 95 kDa subu 94.0 0.038 1.3E-06 53.5 4.3 33 19-54 77-110 (516)
487 1s1m_A CTP synthase; CTP synth 94.0 0.33 1.1E-05 47.6 10.9 39 20-58 4-45 (545)
488 1iqp_A RFCS; clamp loader, ext 94.0 0.029 9.8E-07 49.8 3.1 35 21-55 48-83 (327)
489 4b3f_X DNA-binding protein smu 94.0 0.053 1.8E-06 54.0 5.3 33 21-53 207-240 (646)
490 1s96_A Guanylate kinase, GMP k 93.9 0.037 1.3E-06 47.7 3.5 29 15-43 12-41 (219)
491 1e9r_A Conjugal transfer prote 93.8 0.054 1.8E-06 50.9 4.9 40 18-59 52-92 (437)
492 4b4t_H 26S protease regulatory 93.8 0.045 1.5E-06 52.7 4.3 35 16-53 240-275 (467)
493 2fna_A Conserved hypothetical 93.8 0.063 2.1E-06 47.9 5.1 35 20-57 31-66 (357)
494 1ex7_A Guanylate kinase; subst 93.8 0.036 1.2E-06 46.8 3.2 20 22-41 4-24 (186)
495 1z6g_A Guanylate kinase; struc 93.8 0.029 9.8E-07 48.0 2.6 27 16-42 20-47 (218)
496 3te6_A Regulatory protein SIR3 93.8 0.047 1.6E-06 50.0 4.1 27 18-44 44-71 (318)
497 4b4t_I 26S protease regulatory 93.7 0.055 1.9E-06 51.7 4.7 34 17-53 214-248 (437)
498 3nwj_A ATSK2; P loop, shikimat 93.7 0.037 1.3E-06 48.8 3.3 24 19-42 48-72 (250)
499 2zan_A Vacuolar protein sortin 93.6 0.056 1.9E-06 51.4 4.6 35 18-54 166-201 (444)
500 1sxj_C Activator 1 40 kDa subu 93.6 0.036 1.2E-06 50.3 3.1 36 22-57 49-85 (340)
No 1
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.97 E-value=2.8e-30 Score=229.97 Aligned_cols=246 Identities=20% Similarity=0.336 Sum_probs=179.0
Q ss_pred ccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhh
Q 023298 14 SWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIY 92 (284)
Q Consensus 14 ~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~ 92 (284)
.++-+..+++++|.| |||||++.+|+.+++ .|++|++||+|||.+.+++.+..++++..+..+++.+ +++|||.++.
T Consensus 9 ~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 86 (262)
T 1yrb_A 9 HHGMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE-GYGPNGAIVE 86 (262)
T ss_dssp CTTCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTT-TCCHHHHHHH
T ss_pred cCCcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhc-cCCCCCcEEe
Confidence 466778889999999 999999999999999 9999999999999998888888888888888888877 8889998888
Q ss_pred hhHhhhhcHHHHHHHHhhccC-CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHH
Q 023298 93 CMEHLEDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 171 (284)
Q Consensus 93 ~~e~~~~~~~~~l~~~l~~~~-~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l 171 (284)
+.+...... +++.+.++... +++++|+||||+.+.......+..+.+.+ .. +++++++|+....++..+.....
T Consensus 87 ~~~~~~~~~-~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~ 161 (262)
T 1yrb_A 87 SYDRLMEKF-NEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRF 161 (262)
T ss_dssp HHHHHHTTH-HHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHH
T ss_pred cHHHHhhhH-HHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHH
Confidence 776554444 56666665442 47999999999987654444344444434 22 68999999877666666544332
Q ss_pred HHHHHHHhcCCCEEEEecCCccccchhhh---hhhcCcchHHHHHHhhh-cchhHHHHHHHHHHHHHhccCC-ceEEEEe
Q 023298 172 ASLSAMVQLELPHVNILSKMDLVTNKKEI---EDYLNPESQFLLSELNQ-HMAPQFAKLNKSLIELVDEYSM-VSFMPLD 246 (284)
Q Consensus 172 ~~l~~~~~~~~p~IlVlNK~Dll~~~~~l---~~~l~~~~~~l~~~l~~-~~~~~~~~l~~~i~~~l~~~~~-~~~ipiS 246 (284)
.......+.++|.++|+||+|+.... +. .++++ +.+.+.+.+.. ...+++.++ ++++.+++++. ..++|+|
T Consensus 162 ~~~~~~~~~~~p~~iv~NK~D~~~~~-~~~~~~~~l~-~~~~~~~~l~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~S 237 (262)
T 1yrb_A 162 FALLIDLRLGATTIPALNKVDLLSEE-EKERHRKYFE-DIDYLTARLKLDPSMQGLMAY--KMCSMMTEVLPPVRVLYLS 237 (262)
T ss_dssp HHHHHHHHHTSCEEEEECCGGGCCHH-HHHHHHHHHH-CHHHHHHHHHHCCSHHHHHHH--HHHHHHHHHSCCCCCEECC
T ss_pred HHHHHhcccCCCeEEEEecccccccc-cHHHHHHHHh-ChHHHHHHHhccccccchhHh--HHHHHHHHhcCcccceEEE
Confidence 22233345678999999999997543 22 22221 22223223211 123345443 67777777765 4899999
Q ss_pred ccCcccHHHHHHHHHHhcCCCCCC
Q 023298 247 LRKESSIRYVLSQIDNCIQWGEDA 270 (284)
Q Consensus 247 a~~~~~l~~Ll~~I~~~l~~g~d~ 270 (284)
|++++|+++|++.|.+.+++|||+
T Consensus 238 A~~~~gi~~l~~~i~~~~~~~~~~ 261 (262)
T 1yrb_A 238 AKTREGFEDLETLAYEHYCTCGDL 261 (262)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHC--
T ss_pred ecCcccHHHHHHHHHHHhccccCC
Confidence 999999999999999999999985
No 2
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.71 E-value=1.9e-16 Score=145.55 Aligned_cols=180 Identities=14% Similarity=0.157 Sum_probs=115.1
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhH
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 95 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e 95 (284)
..+-.|.++|.+ ||||||...|. |.++.++.-.||.+... ++..
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~------g~~~~i~s~~~~tT~~~------~~~~----------------------- 52 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLL------GTKVSIISPKAGTTRMR------VLGV----------------------- 52 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHH------TSCCSCCCSSSCCCCSC------EEEE-----------------------
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh------CCCccccCCCCCceeeE------EEEE-----------------------
Confidence 344568899999 99999999886 34444444444333110 0000
Q ss_pred hhhhcHHHHHHHHhhccC-CCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCHHHHHHHHHHH
Q 023298 96 HLEDNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMAS 173 (284)
Q Consensus 96 ~~~~~~~~~l~~~l~~~~-~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~~~i~~~l~~ 173 (284)
.... +.+++|+||||+.....+...++.|..... .....+++++++|+....+..+.. .+
T Consensus 53 --------------~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~-~~--- 114 (308)
T 3iev_A 53 --------------KNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEE-IY--- 114 (308)
T ss_dssp --------------EEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HH---
T ss_pred --------------EecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHH-HH---
Confidence 0011 447899999999874433555666654432 122247899999998654443321 11
Q ss_pred HHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-CCceEEEEeccCccc
Q 023298 174 LSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESS 252 (284)
Q Consensus 174 l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-~~~~~ipiSa~~~~~ 252 (284)
+..+.+.+.|+++|+||+|+..+...+.+.. .++.+.+ .+..++|+||++|.|
T Consensus 115 ~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~--------------------------~~l~~~~~~~~~i~~vSA~~g~g 168 (308)
T 3iev_A 115 QNFIKPLNKPVIVVINKIDKIGPAKNVLPLI--------------------------DEIHKKHPELTEIVPISALKGAN 168 (308)
T ss_dssp HHHTGGGCCCEEEEEECGGGSSSGGGGHHHH--------------------------HHHHHHCTTCCCEEECBTTTTBS
T ss_pred HHHHHhcCCCEEEEEECccCCCCHHHHHHHH--------------------------HHHHHhccCCCeEEEEeCCCCCC
Confidence 2233456899999999999973221333222 1122334 467899999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCC
Q 023298 253 IRYVLSQIDNCIQWGEDADLKIK 275 (284)
Q Consensus 253 l~~Ll~~I~~~l~~g~d~~~~~~ 275 (284)
+++|++.|.+.+++++...+.+.
T Consensus 169 v~~L~~~l~~~l~~~~~~~~~~~ 191 (308)
T 3iev_A 169 LDELVKTILKYLPEGEPLFPEDM 191 (308)
T ss_dssp HHHHHHHHHHHSCBCCCSSCTTC
T ss_pred HHHHHHHHHHhCccCCCCCCccc
Confidence 99999999999999988776544
No 3
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.71 E-value=8.5e-17 Score=150.70 Aligned_cols=198 Identities=13% Similarity=0.068 Sum_probs=108.4
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHh--hhcCc--ccCchh
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVM--EELGL--GPNGGL 90 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm--~~~~l--gPng~l 90 (284)
-.+...+.++|++ |||||++.+|+..++..|++|.+++.||+........ +.+.+.....- ....+ .|++..
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~---l~d~~~~~~~~~~~~~~i~~~~~~~~ 152 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSI---LGDKTRMARLAVHPNAYIRPSPTSGT 152 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------------------CHHHHTCTTEEEECCC--CC
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchh---ccchhhHHhhccCCCeeEEECCCCcc
Confidence 3456779999999 9999999999999999999999999999987532210 00100000000 00000 011111
Q ss_pred hhhhHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHH
Q 023298 91 IYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGC 170 (284)
Q Consensus 91 ~~~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~ 170 (284)
.. .+.....+.+ ..++.. +++++||||||..... . ..+ ...+++++++|+...... ..+..
T Consensus 153 ~~---~~~~~t~d~i-~~~~~~-~~~~iiiDTpGi~~~~------~---~~~---~~aD~vl~V~d~~~~~~~-~~l~~- 213 (355)
T 3p32_A 153 LG---GVTRATRETV-VLLEAA-GFDVILIETVGVGQSE------V---AVA---NMVDTFVLLTLARTGDQL-QGIKK- 213 (355)
T ss_dssp HH---HHHHHHHHHH-HHHHHT-TCCEEEEEECSCSSHH------H---HHH---TTCSEEEEEEESSTTCTT-TTCCT-
T ss_pred cc---chhHHHHHHH-HHHhhC-CCCEEEEeCCCCCcHH------H---HHH---HhCCEEEEEECCCCCccH-HHHHH-
Confidence 11 1111111222 222222 6799999999954310 1 112 235789999997543221 11110
Q ss_pred HHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-----CC-ceEEE
Q 023298 171 MASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-----SM-VSFMP 244 (284)
Q Consensus 171 l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-----~~-~~~ip 244 (284)
...++|.++|+||+|+.... ....... .+ .+.+..+ ++ ..+++
T Consensus 214 -------~~~~~p~ivVlNK~Dl~~~~-~~~~~~~-------------------~l----~~~l~~~~~~~~~~~~~vi~ 262 (355)
T 3p32_A 214 -------GVLELADIVVVNKADGEHHK-EARLAAR-------------------EL----SAAIRLIYPREALWRPPVLT 262 (355)
T ss_dssp -------TSGGGCSEEEEECCCGGGHH-HHHHHHH-------------------HH----HHHHHHHSTTCCSCCCCEEE
T ss_pred -------hHhhcCCEEEEECCCCcChh-HHHHHHH-------------------HH----HHHHhhccccccCCCCceEE
Confidence 01346999999999986533 2222110 01 1111111 22 57999
Q ss_pred EeccCcccHHHHHHHHHHhcCC
Q 023298 245 LDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 245 iSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+||++|+|+++|++.|.+.+++
T Consensus 263 iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 263 MSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988765
No 4
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.64 E-value=1.7e-15 Score=138.99 Aligned_cols=122 Identities=13% Similarity=0.083 Sum_probs=83.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCHH-HHHHHHHHHHHHHHhc--CCCEEEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVT-KFISGCMASLSAMVQL--ELPHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~-~~i~~~l~~l~~~~~~--~~p~IlVlN 189 (284)
+.+++++||||+.. ......+.+..... .....+++++++|+....+.. ..+.. .+.+. +.|.++|+|
T Consensus 54 ~~~l~l~DTpG~~~--~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~------~l~~~~~~~p~ilV~N 125 (301)
T 1wf3_A 54 RRQIVFVDTPGLHK--PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVAR------ALKPLVGKVPILLVGN 125 (301)
T ss_dssp TEEEEEEECCCCCC--CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHH------HHGGGTTTSCEEEEEE
T ss_pred CcEEEEecCccccc--hhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHH------HHHhhcCCCCEEEEEE
Confidence 45789999999886 33444444544432 334467899999997543332 32322 22334 799999999
Q ss_pred CCccccchhh-hhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 190 KMDLVTNKKE-IEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 190 K~Dll~~~~~-l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
|+|+.... . +.+.. .++ .++..++|+||++|.|++.|++.|.+.+++++
T Consensus 126 K~Dl~~~~-~~~~~~~--------------------------~~~---~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 126 KLDAAKYP-EEAMKAY--------------------------HEL---LPEAEPRMLSALDERQVAELKADLLALMPEGP 175 (301)
T ss_dssp CGGGCSSH-HHHHHHH--------------------------HHT---STTSEEEECCTTCHHHHHHHHHHHHTTCCBCC
T ss_pred CcccCCch-HHHHHHH--------------------------HHh---cCcCcEEEEeCCCCCCHHHHHHHHHHhcccCC
Confidence 99997644 2 21111 111 45678999999999999999999999999888
Q ss_pred CCCCC
Q 023298 269 DADLK 273 (284)
Q Consensus 269 d~~~~ 273 (284)
...+.
T Consensus 176 ~~y~~ 180 (301)
T 1wf3_A 176 FFYPE 180 (301)
T ss_dssp CSSCT
T ss_pred CCCCc
Confidence 66543
No 5
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.60 E-value=2.7e-15 Score=139.82 Aligned_cols=196 Identities=11% Similarity=0.045 Sum_probs=108.4
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhh-
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM- 94 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~- 94 (284)
.+...+.++|++ +||||++.+|+..+...|.+|.+++.||+........ +.+ ..-|++++..|++.+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~i---l~d----~~~~~~~~~~~~~~i~~~~~ 126 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSI---LGD----KTRMNDLARAEAAFIRPVPS 126 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------------CTTTTCTTEEEEEECC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcce---ecc----cchHHhhccCCCceeecCcc
Confidence 455668899999 9999999999999999999999999999886432210 011 1112333444554221100
Q ss_pred -HhhhhcHHHHHHHHhhc--cCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHH
Q 023298 95 -EHLEDNLDDWLAEELDN--YLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 171 (284)
Q Consensus 95 -e~~~~~~~~~l~~~l~~--~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l 171 (284)
..+.....+.+ +.+.. ..+++++|+||||..... .. +. ...+++++++|+.... . +.. +
T Consensus 127 ~~~l~g~~~~~~-~~~~~~~~~~~~i~liDTpG~~~~~------~~----~~--~~aD~vl~Vvd~~~~~---~-~~~-l 188 (341)
T 2p67_A 127 SGHLGGASQRAR-ELMLLCEAAGYDVVIVETVGVGQSE------TE----VA--RMVDCFISLQIAGGGD---D-LQG-I 188 (341)
T ss_dssp -----CHHHHHH-HHHHHHHHTTCSEEEEEEECCTTHH------HH----HH--TTCSEEEEEECC----------CC-C
T ss_pred ccccchhHHHHH-HHHHHhhccCCCEEEEeCCCccchH------HH----HH--HhCCEEEEEEeCCccH---H-HHH-H
Confidence 00000010111 11111 126799999999975411 11 11 2357899999985321 1 100 0
Q ss_pred HHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC------CceEEEE
Q 023298 172 ASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS------MVSFMPL 245 (284)
Q Consensus 172 ~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~------~~~~ipi 245 (284)
. . ...+.|.++|+||+|+.... ......+ .+.+.+..++ ...++|+
T Consensus 189 ~---~-~~~~~p~ivv~NK~Dl~~~~-~~~~~~~-----------------------~l~~~l~~~~~~~~~~~~~vi~i 240 (341)
T 2p67_A 189 K---K-GLMEVADLIVINKDDGDNHT-NVAIARH-----------------------MYESALHILRRKYDEWQPRVLTC 240 (341)
T ss_dssp C---H-HHHHHCSEEEECCCCTTCHH-HHHHHHH-----------------------HHHHHHHHSCCSBTTBCCEEEEC
T ss_pred H---H-hhhcccCEEEEECCCCCChH-HHHHHHH-----------------------HHHHHHHhccccccCCCCcEEEe
Confidence 0 0 11246899999999986532 2222110 0111112222 3578999
Q ss_pred eccCcccHHHHHHHHHHhcC
Q 023298 246 DLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 246 Sa~~~~~l~~Ll~~I~~~l~ 265 (284)
||++|+|++.|++.|.+.++
T Consensus 241 SA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 241 SALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp BGGGTBSHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 6
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.59 E-value=9.1e-15 Score=133.99 Aligned_cols=126 Identities=12% Similarity=0.135 Sum_probs=82.3
Q ss_pred CCCEEEEeCCCCc-ccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQI-ELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~-e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.+++++||||+. .. +......+..... .....+++++++|+.........+.. .+.+.+.|.++|+||+
T Consensus 55 ~~~i~~iDTpG~~~~~--~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~------~l~~~~~P~ilvlNK~ 126 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEE--KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLN------KLREGKAPVILAVNKV 126 (301)
T ss_dssp TEEEEEESSSSCCHHH--HHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHH------HHHSSSSCEEEEEEST
T ss_pred CeeEEEEECcCCCccc--hhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHH------HHHhcCCCEEEEEECc
Confidence 4478999999986 31 1122222322222 24556889999999763323333322 2234689999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDAD 271 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~ 271 (284)
|+...+..+.+.+ .++.+.+++..++|+||+++.|++.|++.|.+.+++++...
T Consensus 127 D~~~~~~~~~~~l--------------------------~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~ 180 (301)
T 1ega_A 127 DNVQEKADLLPHL--------------------------QFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHF 180 (301)
T ss_dssp TTCCCHHHHHHHH--------------------------HHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSS
T ss_pred ccCccHHHHHHHH--------------------------HHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCC
Confidence 9875221222221 22224466678999999999999999999999999987665
Q ss_pred CC
Q 023298 272 LK 273 (284)
Q Consensus 272 ~~ 273 (284)
+.
T Consensus 181 ~~ 182 (301)
T 1ega_A 181 PE 182 (301)
T ss_dssp CT
T ss_pred Cc
Confidence 44
No 7
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.56 E-value=4.5e-14 Score=121.52 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=77.2
Q ss_pred CCCEEEEeCCCCcccccccchH---HHHH-HHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVL---RNFV-DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~---~~l~-~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlN 189 (284)
+.++.++||||+.......... ..+. ..+......++++|++|+....+.... .+ +..+...+.|+++|+|
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~---~~~l~~~~~p~i~v~n 152 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDR--RM---IEWFAPTGKPIHSLLT 152 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH--HH---HHHHGGGCCCEEEEEE
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHH--HH---HHHHHhcCCCEEEEEe
Confidence 4689999999965432111111 1222 234444445789999999754333221 11 2233457899999999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHh--ccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~--~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+|+.... +.....+ .+...+..... ......++++||++|.|+++|++.|.+.++..
T Consensus 153 K~Dl~~~~-~~~~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 153 KCDKLTRQ-ESINALR-------------------ATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CGGGSCHH-HHHHHHH-------------------HHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred ccccCChh-hHHHHHH-------------------HHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 99997644 3322221 01111111111 12457899999999999999999999998765
Q ss_pred CC
Q 023298 268 ED 269 (284)
Q Consensus 268 ~d 269 (284)
..
T Consensus 213 ~~ 214 (223)
T 4dhe_A 213 AA 214 (223)
T ss_dssp --
T ss_pred CC
Confidence 43
No 8
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.54 E-value=1.7e-13 Score=111.15 Aligned_cols=111 Identities=9% Similarity=0.082 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCC-HHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~-~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+...... ...+..... .....+++++++|+....+ ....+..+ +.+.+.|+++|+||+|
T Consensus 49 ~~~~l~Dt~G~~~~~~~---~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~------~~~~~~p~ilv~nK~D 119 (161)
T 2dyk_A 49 GRFLLVDTGGLWSGDKW---EKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEY------LRRKGKPVILVATKVD 119 (161)
T ss_dssp EEEEEEECGGGCSSSSC---CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHH------HHHHTCCEEEEEECCC
T ss_pred ceEEEEECCCCCCccch---HHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHH------HHhcCCCEEEEEECcc
Confidence 46899999998763211 111222111 1223468999999976433 22333332 2236789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+...+.+..++ ..+++..++++||++|.|++++++.+.+.+|
T Consensus 120 l~~~~~~~~~~-------------------------------~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 120 DPKHELYLGPL-------------------------------YGLGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp SGGGGGGCGGG-------------------------------GGGSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred cccchHhHHHH-------------------------------HhCCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 87532111111 1344557999999999999999999988765
No 9
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.52 E-value=2.9e-13 Score=113.13 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=76.5
Q ss_pred CCCEEEEeCCCCccccccc---chHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHH-HHHHHHHHHHHHHhcCCCEEEEe
Q 023298 114 DDDYLVFDCPGQIELFTHV---PVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNIL 188 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~---~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~-~i~~~l~~l~~~~~~~~p~IlVl 188 (284)
+.++.++||||........ .....+.+. +......+++++++|+....+... .+.. .+...+.|+++|+
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~------~~~~~~~p~i~v~ 140 (195)
T 3pqc_A 67 NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVE------WMKSLNIPFTIVL 140 (195)
T ss_dssp TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH------HHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHH------HHHHcCCCEEEEE
Confidence 4578999999954321110 111222232 333344578999999865433322 2222 2335589999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
||+|+.... +..... ..+.+.+..++...++++||++|+|++++++.|.+.+++
T Consensus 141 nK~Dl~~~~-~~~~~~-----------------------~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 141 TKMDKVKMS-ERAKKL-----------------------EEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp ECGGGSCGG-GHHHHH-----------------------HHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EChhcCChH-HHHHHH-----------------------HHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 999997543 332221 112333455566789999999999999999999988764
No 10
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.48 E-value=3e-13 Score=132.42 Aligned_cols=202 Identities=9% Similarity=0.045 Sum_probs=108.0
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCc--ccCchhhhh
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGL--GPNGGLIYC 93 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~l--gPng~l~~~ 93 (284)
.++..|+|+|++ |||||++.+|+.++++.|++|++|+.||+.... ++. + . ......++ .+.+.-...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa-----~~q--L-~--~~~~~~~i~v~~~~~~~dp 168 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGA-----FDQ--L-K--QNATKARIPFYGSYTEMDP 168 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHH-----HHH--H-H--HHHHHHTCCEEECCCCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhH-----HHH--H-H--HHhhccCceEEccCCCCCH
Confidence 457789999999 999999999999999999999999999987531 110 0 0 00011111 000000000
Q ss_pred hHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHH
Q 023298 94 MEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMAS 173 (284)
Q Consensus 94 ~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~ 173 (284)
.+.+...+ . .+.. .+++++||||||.... .......+....... .++.+++++|+....+..... .
T Consensus 169 ~~i~~~al----~-~~~~-~~~DvvIIDTpG~~~~--~~~l~~el~~~~~~i-~pd~vllVvDa~~g~~~~~~a-~---- 234 (504)
T 2j37_W 169 VIIASEGV----E-KFKN-ENFEIIIVDTSGRHKQ--EDSLFEEMLQVANAI-QPDNIVYVMDASIGQACEAQA-K---- 234 (504)
T ss_dssp HHHHHHHH----H-HHHH-TTCCEEEEEECCCCTT--CHHHHHHHHHHHHHH-CCSEEEEEEETTCCTTHHHHH-H----
T ss_pred HHHHHHHH----H-HHHH-CCCcEEEEeCCCCccc--chhHHHHHHHHHhhh-cCceEEEEEeccccccHHHHH-H----
Confidence 11111111 1 1211 2679999999998752 112222232222211 246789999997543322211 1
Q ss_pred HHHHHhcCCCE-EEEecCCccccchhhhhhhcCcchHHHHHHhhhc----c-hhHHHHHHHHHHHHHhccCCceEEEEec
Q 023298 174 LSAMVQLELPH-VNILSKMDLVTNKKEIEDYLNPESQFLLSELNQH----M-APQFAKLNKSLIELVDEYSMVSFMPLDL 247 (284)
Q Consensus 174 l~~~~~~~~p~-IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~----~-~~~~~~l~~~i~~~l~~~~~~~~ipiSa 247 (284)
.+.. .+|+ ++|+||+|...+........ .....+ . .. .+.+-..|....++|+
T Consensus 235 --~~~~-~~~i~gvVlNK~D~~~~~g~~l~~~--------~~~g~PI~fig~ge----------~~~dl~~f~~~~~vsa 293 (504)
T 2j37_W 235 --AFKD-KVDVASVIVTKLDGHAKGGGALSAV--------AATKSPIIFIGTGE----------HIDDFEPFKTQPFISK 293 (504)
T ss_dssp --HHHH-HHCCCCEEEECTTSCCCCTHHHHHH--------HHHCCCEEEEECSS----------STTCEECCTHHHHHHC
T ss_pred --HHHh-hcCceEEEEeCCccccchHHHHHHH--------HHhCCCeEEecccc----------chhhhhccCcceeeeh
Confidence 1112 2574 99999999864331111111 000000 0 00 0001122344567899
Q ss_pred cCccc-HHHHHHHHHHh
Q 023298 248 RKESS-IRYVLSQIDNC 263 (284)
Q Consensus 248 ~~~~~-l~~Ll~~I~~~ 263 (284)
..|.| +..|++.+.+.
T Consensus 294 l~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 294 LLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCTTTTTTTTHHHHTTT
T ss_pred hcCCCcHHHHHHHHHHH
Confidence 99999 99999999887
No 11
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.48 E-value=4.5e-14 Score=135.84 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=85.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCc--ccCchhhhhh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGL--GPNGGLIYCM 94 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~l--gPng~l~~~~ 94 (284)
+|..++++|++ |||||++.+|+.+++..|++|++|++|||....-. .+ ....+..++ .|.+. ..-
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~-------qL---~~~~~~~gv~v~~~~~--~~~ 165 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYE-------QL---KQLAEKIHVPIYGDET--RTK 165 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGG-------SS---HHHHHHSSCCEECCSS--SCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHH-------HH---HHhhhccCcceEecCC--CCC
Confidence 45779999999 99999999999999999999999999999764211 11 111111111 11110 000
Q ss_pred HhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q 023298 95 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 174 (284)
Q Consensus 95 e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l 174 (284)
+. . +.+.+.++...+++++||||||.... .......+ ..+.+...++.+++++|+....+ .+. . .
T Consensus 166 dp----~-~i~~~~l~~~~~~D~vIIDT~G~~~~--~~~l~~~l-~~i~~~~~~d~vllVvda~~g~~---~~~-~---~ 230 (432)
T 2v3c_C 166 SP----V-DIVKEGMEKFKKADVLIIDTAGRHKE--EKGLLEEM-KQIKEITNPDEIILVIDGTIGQQ---AGI-Q---A 230 (432)
T ss_dssp SS----S-TTHHHHHHTTSSCSEEEEECCCSCSS--HHHHHHHH-HHTTSSSCCSEEEEEEEGGGGGG---HHH-H---H
T ss_pred CH----H-HHHHHHHHHhhCCCEEEEcCCCCccc--cHHHHHHH-HHHHHHhcCcceeEEeeccccHH---HHH-H---H
Confidence 00 0 00112222223679999999997651 11112222 12222234678899999854321 111 1 1
Q ss_pred HHHHhcCC-C-EEEEecCCcccc
Q 023298 175 SAMVQLEL-P-HVNILSKMDLVT 195 (284)
Q Consensus 175 ~~~~~~~~-p-~IlVlNK~Dll~ 195 (284)
.. .+... | ..+|+||+|...
T Consensus 231 ~~-~~~~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 231 KA-FKEAVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp HH-HHTTSCSCEEEEEECSSSCS
T ss_pred HH-HhhcccCCeEEEEeCCCCcc
Confidence 11 12235 6 899999999864
No 12
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.47 E-value=1.3e-12 Score=109.71 Aligned_cols=122 Identities=11% Similarity=0.126 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCccccccc---chHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH-HHHHHHHHHHHHhcCCCEEEEe
Q 023298 114 DDDYLVFDCPGQIELFTHV---PVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF-ISGCMASLSAMVQLELPHVNIL 188 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~---~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~-i~~~l~~l~~~~~~~~p~IlVl 188 (284)
+.++.++||||........ .....+... +......+++++++|+....+.... +.. .+...+.|+++|+
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~p~i~v~ 141 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYE------FLKYYGIPVIVIA 141 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH------HHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHH------HHHHcCCCEEEEE
Confidence 3478999999954321111 111122222 3333334789999998765443332 222 2334689999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
||+|+.... ++....+ .+.+.+.......++++||++|+|++++++.|.+.++
T Consensus 142 nK~Dl~~~~-~~~~~~~-----------------------~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 142 TKADKIPKG-KWDKHAK-----------------------VVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECGGGSCGG-GHHHHHH-----------------------HHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ECcccCChH-HHHHHHH-----------------------HHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 999997644 3322110 1122222233478999999999999999999988765
No 13
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.46 E-value=4.6e-13 Score=121.98 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=39.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
+++++.|.|.| +||||++.|||.+|++.|+||++||+|||.+..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~~~~ 84 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDST 84 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTT
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCCHH
Confidence 45667777999 999999999999999999999999999998754
No 14
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.45 E-value=2.5e-13 Score=130.35 Aligned_cols=116 Identities=11% Similarity=0.139 Sum_probs=68.1
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCHHH-HHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~~-~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+... ......++..... ....+++++|++|+....++.+ .+... +.+.++|+++|+||+
T Consensus 50 ~~~~~l~DT~G~~~~--~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~------l~~~~~pvilv~NK~ 121 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIG--DEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKI------LYRTKKPVVLAVNKL 121 (436)
T ss_dssp SSCCEEEC-----------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH------HTTCCSCEEEEEECC
T ss_pred CceEEEEECCCCCCc--chhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH------HHHcCCCEEEEEECc
Confidence 457899999998632 1122333322221 1122468999999976544433 23222 335789999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
|+.....+..++. ..++..++++||++|.|+.+|++.|.+.+++.+
T Consensus 122 D~~~~~~~~~~~~-------------------------------~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~ 167 (436)
T 2hjg_A 122 DNTEMRANIYDFY-------------------------------SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP 167 (436)
T ss_dssp CC-----CCCSSG-------------------------------GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCC
T ss_pred cCccchhhHHHHH-------------------------------HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccc
Confidence 9865321111111 234558899999999999999999999998654
No 15
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.45 E-value=5.9e-13 Score=114.63 Aligned_cols=180 Identities=10% Similarity=0.123 Sum_probs=105.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcC----cccCchhhh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELG----LGPNGGLIY 92 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~----lgPng~l~~ 92 (284)
+...++|+|++ |||||++.+|+.++... +++.+|+.||+.+ + |-.. ++..+ ..++|+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~~---~----d~~~-------~~~~~~~~~~~~~~~~~- 92 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVSK---A----DYER-------VRRFGIKAEAISTGKEC- 92 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCCH---H----HHHH-------HHTTTCEEEECCCTTCS-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCCc---h----hHHH-------HHhCCCcEEEecCCcee-
Confidence 45679999999 99999999999988655 7899999999743 1 1100 01101 01222221
Q ss_pred hhHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHH
Q 023298 93 CMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 172 (284)
Q Consensus 93 ~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~ 172 (284)
++. .+++.+.+....+.+++++||||++..-.+ + ... ...+++++|+...... ....
T Consensus 93 ~~~------~~~~~~~~~~~~~~d~iiidt~G~~~~~~~----------~-~~~-~~~~i~vvd~~~~~~~---~~~~-- 149 (221)
T 2wsm_A 93 HLD------AHMIYHRLKKFSDCDLLLIENVGNLICPVD----------F-DLG-ENYRVVMVSVTEGDDV---VEKH-- 149 (221)
T ss_dssp SCC------HHHHHTTGGGGTTCSEEEEEEEEBSSGGGG----------C-CCS-CSEEEEEEEGGGCTTH---HHHC--
T ss_pred ecc------cHHHHHHHHhcCCCCEEEEeCCCCCCCCch----------h-ccc-cCcEEEEEeCCCcchh---hhhh--
Confidence 110 122333332222679999999996321111 1 011 2457889998654321 1111
Q ss_pred HHHHHHhcCCCEEEEecCCccccch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCc
Q 023298 173 SLSAMVQLELPHVNILSKMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKE 250 (284)
Q Consensus 173 ~l~~~~~~~~p~IlVlNK~Dll~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~ 250 (284)
....+.|.++|+||+|+.... .+..+.. +.+...+ ...++++||++|
T Consensus 150 ----~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~---------------------------~~~~~~~~~~~i~~~Sa~~g 198 (221)
T 2wsm_A 150 ----PEIFRVADLIVINKVALAEAVGADVEKMK---------------------------ADAKLINPRAKIIEMDLKTG 198 (221)
T ss_dssp ----HHHHHTCSEEEEECGGGHHHHTCCHHHHH---------------------------HHHHHHCTTSEEEECBTTTT
T ss_pred ----hhhhhcCCEEEEecccCCcchhhHHHHHH---------------------------HHHHHhCCCCeEEEeecCCC
Confidence 112357999999999986421 0111111 1112222 368999999999
Q ss_pred ccHHHHHHHHHHhcCCC
Q 023298 251 SSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 251 ~~l~~Ll~~I~~~l~~g 267 (284)
+|+++|++.|.+.+...
T Consensus 199 ~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 199 KGFEEWIDFLRGILNVH 215 (221)
T ss_dssp BTHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999998877543
No 16
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.44 E-value=6.4e-13 Score=119.96 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=75.9
Q ss_pred CCCEEEEeCCCCcccccc---cchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTH---VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~---~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+.++.++||||+...... ....+.+.+........+++++++|+... ... +.....+...+.|+++|+||
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---~~~----~~~~~~l~~~~~p~ivv~NK 121 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---ERN----LYLTLQLLELGIPCIVALNM 121 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---HHH----HHHHHHHHHHTCCEEEEEEC
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---HHH----HHHHHHHHhcCCCEEEEEEC
Confidence 457899999998764321 23333444443222335789999998642 222 12223445668999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+|+.... .+.... + .+. +.++ ..++++||++|.|+++|++.|.+.++..
T Consensus 122 ~Dl~~~~-~~~~~~----~---------------~l~-------~~lg-~~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 122 LDIAEKQ-NIRIEI----D---------------ALS-------ARLG-CPVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHT-TEEECH----H---------------HHH-------HHHT-SCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred ccchhhh-hHHHHH----H---------------HHH-------HhcC-CCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 9986533 221111 0 111 1223 5899999999999999999999988754
No 17
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.44 E-value=1.4e-13 Score=128.63 Aligned_cols=122 Identities=19% Similarity=0.275 Sum_probs=83.1
Q ss_pred CCEEEEeCCCCcccc-cccchHHHHHHHHHhcCCCeEEEEEecCCCC--CCHHHHHHHHHHHHHHHH--hcCCCEEEEec
Q 023298 115 DDYLVFDCPGQIELF-THVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMV--QLELPHVNILS 189 (284)
Q Consensus 115 ~~~viiDtPg~~e~~-~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~--~~~~~~i~~~l~~l~~~~--~~~~p~IlVlN 189 (284)
.+++++||||+++.. .+..+...+++++..+ ++++|++|++.. .++...+..+...+..+. ..++|.++|+|
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~---d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~N 282 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT---RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVAN 282 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC---CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred ceEEEecCCCCcccccccchhHHHHHHHHHhc---cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEE
Confidence 578999999987642 3445567777777653 589999999763 344444444444443332 24799999999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC-ceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-VSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~-~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
|+|+...+..+..+ .+.++. ..++++||++++|+++|++.|.+.+...+
T Consensus 283 K~Dl~~~~e~~~~l------------------------------~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~ 332 (342)
T 1lnz_A 283 KMDMPEAAENLEAF------------------------------KEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 332 (342)
T ss_dssp CTTSTTHHHHHHHH------------------------------HHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred CccCCCCHHHHHHH------------------------------HHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCc
Confidence 99987533111111 122221 57899999999999999999999997655
Q ss_pred C
Q 023298 269 D 269 (284)
Q Consensus 269 d 269 (284)
.
T Consensus 333 ~ 333 (342)
T 1lnz_A 333 E 333 (342)
T ss_dssp C
T ss_pred c
Confidence 4
No 18
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.44 E-value=2.1e-12 Score=106.26 Aligned_cols=113 Identities=12% Similarity=0.171 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+.++||||+.+. ... ....+.. .+++++++|+....+.. .+..++..+......+.|+++|+||+|+.
T Consensus 64 ~~~~l~Dt~G~~~~---~~~---~~~~~~~---~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 64 IKLQIWDTAGQERF---RAV---TRSYYRG---AAGALMVYDITRRSTYN-HLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp EEEEEEECTTGGGT---CHH---HHHHHHT---CSEEEEEEETTCHHHHH-THHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEECCCChHh---hhh---HHHHhcc---CCEEEEEEeCcCHHHHH-HHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 36899999996541 111 1222333 36789999986432111 13344443444444678999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
... .... + .+.++...++ ..++++||++|.|++++++.|.+.+
T Consensus 134 ~~~-~~~~------~-------------------~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 134 AQR-DVTY------E-------------------EAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp GGC-CSCH------H-------------------HHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccc-ccCH------H-------------------HHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 432 1100 0 0011223333 5899999999999999999887765
No 19
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.44 E-value=4.2e-13 Score=119.32 Aligned_cols=162 Identities=15% Similarity=0.201 Sum_probs=88.7
Q ss_pred CceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC---CCCccccccccc---cHHHHh---hhcCccc
Q 023298 18 ALVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF---DYPVAMDIRELI---SLEDVM---EELGLGP 86 (284)
Q Consensus 18 ~~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~---~~~~~~dir~~i---~~~~vm---~~~~lgP 86 (284)
+++++.|+++ | +||||++.+||.+|++.|+||++||+|||++.. .......+.+.+ .+++++ .++.+.|
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~vlp 84 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHLLP 84 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHTTCCCSCCHHHHHTTCCGGGTCEEETTEEEEC
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcCHHHHhCCCCCCCHHHHHcCCCHHHHccccCCEEEEe
Confidence 3455777754 6 999999999999999999999999999997632 222111121111 122221 2344455
Q ss_pred CchhhhhhHh-hhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHH
Q 023298 87 NGGLIYCMEH-LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK 165 (284)
Q Consensus 87 ng~l~~~~e~-~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~ 165 (284)
.+.-....+. +.... +.+.+.++. .+++||||||||..... ....+..+ +.++.++.+.... - .
T Consensus 85 ~~~~~~~~~~~l~~~~-~~l~~~l~~-~~yD~iiiD~pp~~~~~--------~~~~l~~a---D~viiv~~~~~~s-~-~ 149 (257)
T 1wcv_1 85 ATPDLVGATVELAGAP-TALREALRD-EGYDLVLLDAPPSLSPL--------TLNALAAA---EGVVVPVQAEYYA-L-E 149 (257)
T ss_dssp CCTTHHHHHHHHTTCT-THHHHHCCC-TTCSEEEEECCSSCCHH--------HHHHHHHC---SEEEEEEESSTHH-H-H
T ss_pred CChhHHHHHHHHhhHH-HHHHHHhcc-cCCCEEEEeCCCCCCHH--------HHHHHHHC---CeEEEEecCchHH-H-H
Confidence 5443332221 11110 234555554 47899999999976421 12234343 4566666653221 0 1
Q ss_pred HHHHHHHHHHHHH---hcCCCEE-EEecCCccc
Q 023298 166 FISGCMASLSAMV---QLELPHV-NILSKMDLV 194 (284)
Q Consensus 166 ~i~~~l~~l~~~~---~~~~p~I-lVlNK~Dll 194 (284)
-+...+..+..+. +.+.+.+ +|+|+.+..
T Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 150 GVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp HHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 1222223233222 2345664 899999863
No 20
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.42 E-value=8.3e-13 Score=118.31 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCccccccc---chHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHV---PVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~---~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+.++.++||||+....... ...+.+.+..-.....+++++++|+.. +..+. .....+...+.|+++|+||
T Consensus 47 ~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~---~~~~~----~l~~~l~~~~~pvilv~NK 119 (256)
T 3iby_A 47 EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH---LERHL----YLTSQLFELGKPVVVALNM 119 (256)
T ss_dssp TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG---HHHHH----HHHHHHTTSCSCEEEEEEC
T ss_pred CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC---chhHH----HHHHHHHHcCCCEEEEEEC
Confidence 3478999999987643211 223344443321123578999999964 22221 2233455678999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+|+..++ .+.... + .+. +..+ ..++|+||++|.|+++|++.|.+.
T Consensus 120 ~Dl~~~~-~~~~~~----~---------------~l~-------~~lg-~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 120 MDIAEHR-GISIDT----E---------------KLE-------SLLG-CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHHHHT-TCEECH----H---------------HHH-------HHHC-SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred hhcCCcC-CcHHHH----H---------------HHH-------HHcC-CCEEEEECCCCCCHHHHHHHHHhh
Confidence 9987543 221111 0 111 1223 589999999999999999999987
No 21
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.42 E-value=1.3e-12 Score=111.20 Aligned_cols=137 Identities=8% Similarity=0.102 Sum_probs=79.1
Q ss_pred eEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhh
Q 023298 20 VIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 97 (284)
Q Consensus 20 ~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~ 97 (284)
+++.|.|+ | +||||++.+||.+|++.|++|++||+|||.+...|-. .+. .++.+.|.+. +.+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~---~~~--------~~~~~~~~~~-----~~l 65 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSK---AGK--------AAFDVFTAAS-----EKD 65 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHT---TSC--------CSSEEEECCS-----HHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHh---cCC--------CCCcEEecCc-----HHH
Confidence 45667755 6 9999999999999999999999999999998543310 000 0011222211 111
Q ss_pred hhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH
Q 023298 98 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM 177 (284)
Q Consensus 98 ~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~ 177 (284)
... + +.+.+ ++++|+|||||..... ....+..+ +.++.++...... .. +...+..+..+
T Consensus 66 ~~~----l-~~l~~--~yD~viiD~~~~~~~~--------~~~~l~~a---d~viiv~~~~~~~--~~-~~~~~~~l~~~ 124 (206)
T 4dzz_A 66 VYG----I-RKDLA--DYDFAIVDGAGSLSVI--------TSAAVMVS---DLVIIPVTPSPLD--FS-AAGSVVTVLEA 124 (206)
T ss_dssp HHT----H-HHHTT--TSSEEEEECCSSSSHH--------HHHHHHHC---SEEEEEECSCTTT--HH-HHHHHHHHHTT
T ss_pred HHH----H-HHhcC--CCCEEEEECCCCCCHH--------HHHHHHHC---CEEEEEecCCHHH--HH-HHHHHHHHHHH
Confidence 111 1 22332 6899999999976311 22334443 4566666664333 22 22222222211
Q ss_pred H--hcCCCEEEEecCCcc
Q 023298 178 V--QLELPHVNILSKMDL 193 (284)
Q Consensus 178 ~--~~~~p~IlVlNK~Dl 193 (284)
. +.+.++.+|+||++.
T Consensus 125 ~~~~~~~~~~vv~N~~~~ 142 (206)
T 4dzz_A 125 QAYSRKVEARFLITRKIE 142 (206)
T ss_dssp SCGGGCCEEEEEECSBCT
T ss_pred HHhCCCCcEEEEEeccCC
Confidence 1 224677999999985
No 22
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.41 E-value=2.7e-12 Score=112.20 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=84.7
Q ss_pred ceEEEEECC-C-CcHHHHHHHHHHHHHhc-CCceEEEecCcC-CCCCCC----CccccccccccH---------HHHh--
Q 023298 19 LVIKCVFSP-P-PNQSTYCSSLYRHCETV-RRTMHIVNLDPA-AENFDY----PVAMDIRELISL---------EDVM-- 79 (284)
Q Consensus 19 ~~~~~viG~-~-sGKTT~~~~La~~l~~~-g~~v~iVdLDPq-~~~~~~----~~~~dir~~i~~---------~~vm-- 79 (284)
++++.|+|+ | +||||++.+||.+|++. |+||++||+||| .+...+ .+...+.+.+.- +.++
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 83 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTMVQH 83 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHHSEE
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHHhEe
Confidence 455667765 6 99999999999999998 999999999999 443222 112222222110 0011
Q ss_pred --hhcCcccCchhhhhhHhh-hhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEec
Q 023298 80 --EELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLD 156 (284)
Q Consensus 80 --~~~~lgPng~l~~~~e~~-~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiD 156 (284)
.++.+.|.+.-....+.+ ...+.+.+. .+.+ ++++|||||||..... ....+.. .+.+++++.
T Consensus 84 ~~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-~l~~--~yD~viiD~p~~~~~~--------~~~~l~~---ad~viiv~~ 149 (245)
T 3ea0_A 84 ISPSLDLIPSPATFEKIVNIEPERVSDLIH-IAAS--FYDYIIVDFGASIDHV--------GVWVLEH---LDELCIVTT 149 (245)
T ss_dssp EETTEEEECCCSSHHHHHHCCHHHHHHHHH-HHHH--HCSEEEEEEESSCCTT--------HHHHGGG---CSEEEEEEC
T ss_pred cCCCeEEEcCCCChHhhhcCCHHHHHHHHH-HHHh--hCCEEEEeCCCCCchH--------HHHHHHH---CCEEEEEec
Confidence 123444543332222211 112211222 2322 6799999999976422 1122333 355666666
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcC---CCEEEEecCCccc
Q 023298 157 SQFITDVTKFISGCMASLSAMVQLE---LPHVNILSKMDLV 194 (284)
Q Consensus 157 a~~~~~~~~~i~~~l~~l~~~~~~~---~p~IlVlNK~Dll 194 (284)
.. +.. +......+..+.+.+ ...-+|+|+++.-
T Consensus 150 ~~----~~~-~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 150 PS----LQS-LRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp SS----HHH-HHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred Cc----HHH-HHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 53 222 222222233333443 4478999999853
No 23
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.41 E-value=5e-12 Score=118.20 Aligned_cols=196 Identities=13% Similarity=0.109 Sum_probs=101.0
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhH--
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME-- 95 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e-- 95 (284)
...+.++|++ |||||+...|+.++...+.++.++..||+.....- .++.-...|..++..|. +.+....
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g-------~~l~d~~rm~~~~~~~~-~~v~~~~~~ 145 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGG-------SLLGDKTRMTELSRDMN-AYIRPSPTR 145 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------CCSTTCTT-EEEECC---
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCc-------chhchHHHHHHhcCCCC-EEEEecCCc
Confidence 3458999999 99999999999999989999999999999764210 01101112333332221 1110000
Q ss_pred -h---hhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHH
Q 023298 96 -H---LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCM 171 (284)
Q Consensus 96 -~---~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l 171 (284)
. ......+-+. .+.. .+.+++++||||... .. . .+. ...+++++++|+...... ..+..
T Consensus 146 ~~lgg~tr~~~~~~~-~~~~-~~~~~iliDT~Gi~~--~~----~----~l~--~~~d~vl~V~d~~~~~~~-~~i~~-- 208 (349)
T 2www_A 146 GTLGGVTRTTNEAIL-LCEG-AGYDIILIETVGVGQ--SE----F----AVA--DMVDMFVLLLPPAGGDEL-QGIKR-- 208 (349)
T ss_dssp ------CTTHHHHHH-HHHH-TTCSEEEEECCCC----CH----H----HHH--TTCSEEEEEECCC-------------
T ss_pred cccccchHHHHHHHH-hhcc-CCCCEEEEECCCcch--hh----h----hHH--hhCCEEEEEEcCCcchhH-HHhHH--
Confidence 0 0000101000 1111 267999999999642 11 1 121 224689999998643111 11110
Q ss_pred HHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHh--ccCCceEEEEeccC
Q 023298 172 ASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVD--EYSMVSFMPLDLRK 249 (284)
Q Consensus 172 ~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~--~~~~~~~ipiSa~~ 249 (284)
. -.+.|.++|+||+|+.... ...... ..+...+..... ......++++||++
T Consensus 209 ----~--il~~~~ivVlNK~Dl~~~~-~~~~~~-------------------~~l~~~l~~~~~~a~~~~~~vi~iSA~~ 262 (349)
T 2www_A 209 ----G--IIEMADLVAVTKSDGDLIV-PARRIQ-------------------AEYVSALKLLRKRSQVWKPKVIRISARS 262 (349)
T ss_dssp --------CCSCSEEEECCCSGGGHH-HHHHHH-------------------HHHHHHHTTCC-----CCCEEEECCTTT
T ss_pred ----H--HHhcCCEEEEeeecCCCch-hHHHHH-------------------HHHHHHHHhcCccccCCCceEEEEecCC
Confidence 0 1357999999999986432 111111 001100000000 01135789999999
Q ss_pred cccHHHHHHHHHHhcC
Q 023298 250 ESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 250 ~~~l~~Ll~~I~~~l~ 265 (284)
|+|++.|++.|.+.++
T Consensus 263 g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 263 GEGISEMWDKMKDFQD 278 (349)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988764
No 24
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.41 E-value=2.1e-12 Score=108.14 Aligned_cols=128 Identities=9% Similarity=0.016 Sum_probs=68.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~D 192 (284)
+.++.++||||+.+.. ... ...+.. .+++++++|+....+... +..++..+.... ..+.|+++|+||+|
T Consensus 59 ~~~~~i~Dt~G~~~~~---~~~---~~~~~~---~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~NK~D 128 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLR---SSW---NTYYTN---TEFVIVVVDSTDRERISV-TREELYKMLAHEDLRKAGLLIFANKQD 128 (187)
T ss_dssp TEEEEEEECCC----C---GGG---HHHHTT---CCEEEEEEETTCTTTHHH-HHHHHHHHHTSGGGTTCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhHH---HHH---HHHhcC---CCEEEEEEeCCCHHHHHH-HHHHHHHHHhchhhCCCeEEEEEECCC
Confidence 3468999999985421 111 112322 468999999875543332 222222211111 25789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDADL 272 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~~ 272 (284)
+.... ...+.. +.+.. ..+... ...++++||++|+|++++++.|.+.++..+...+
T Consensus 129 l~~~~-~~~~i~--------~~~~~--------------~~~~~~-~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 129 VKECM-TVAEIS--------QFLKL--------------TSIKDH-QWHIQACCALTGEGLCQGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp STTCC-CHHHHH--------HHHTG--------------GGCCSS-CEEEEECBTTTTBTHHHHHHHHHHHHCC------
T ss_pred CcCCC-CHHHHH--------HHhCh--------------hhhcCC-CcEEEEccCCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 96532 111111 00000 000111 2589999999999999999999999988887766
Q ss_pred CCC
Q 023298 273 KIK 275 (284)
Q Consensus 273 ~~~ 275 (284)
..|
T Consensus 185 ~~~ 187 (187)
T 1zj6_A 185 HHH 187 (187)
T ss_dssp ---
T ss_pred cCC
Confidence 543
No 25
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.41 E-value=8.8e-13 Score=115.07 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=35.3
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
|.|.|.| +||||++.|||.+|++.|+||++||+|||.+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcC
Confidence 5558999 9999999999999999999999999999965
No 26
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.40 E-value=3.3e-12 Score=105.22 Aligned_cols=115 Identities=10% Similarity=0.148 Sum_probs=69.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh----cCCCEEEEe
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ----LELPHVNIL 188 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~----~~~p~IlVl 188 (284)
..+.++||||+.+.. .+.... ....+++++++|+.. +..+ +..++..+..... .+.|+++|+
T Consensus 56 ~~~~i~Dt~G~~~~~-------~~~~~~--~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~ 123 (177)
T 1wms_A 56 VTMQIWDTAGQERFR-------SLRTPF--YRGSDCCLLTFSVDD---SQSFQNLSNWKKEFIYYADVKEPESFPFVILG 123 (177)
T ss_dssp EEEEEEECCCCGGGH-------HHHGGG--GTTCSEEEEEEETTC---HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEE
T ss_pred EEEEEEeCCCchhhh-------hhHHHH--HhcCCEEEEEEECcC---HHHHHHHHHHHHHHHHHccccccCCCcEEEEE
Confidence 368999999975421 121111 122467899999863 3222 2333333333332 578999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
||+|+...+...++. .++........++++||++|.|++++++.|.+.+...+
T Consensus 124 nK~Dl~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 176 (177)
T 1wms_A 124 NKIDISERQVSTEEA---------------------------QAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176 (177)
T ss_dssp ECTTCSSCSSCHHHH---------------------------HHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC-
T ss_pred ECCcccccccCHHHH---------------------------HHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhhc
Confidence 999986322000000 11122234568999999999999999999988775443
No 27
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.40 E-value=2.8e-12 Score=123.34 Aligned_cols=152 Identities=14% Similarity=0.127 Sum_probs=84.5
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhh
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 94 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~ 94 (284)
.+|+.++++|++ |||||++.+||.+|++. |++|++||+|||..... + .+.++.+. .+..+.|.+.-....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~-----~--ql~~~~~~-~~l~v~~~~~~~dp~ 169 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAI-----K--QLETLAEQ-VGVDFFPSDVGQKPV 169 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHH-----H--HHHHHHHH-HTCEECCCCSSSCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHH-----H--HHHhhccc-CCeeEEeCCCCCCHH
Confidence 357889999999 99999999999999998 99999999999986421 1 11011110 111222221100001
Q ss_pred HhhhhcHHHHHHHHhhcc--CCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHH
Q 023298 95 EHLEDNLDDWLAEELDNY--LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMA 172 (284)
Q Consensus 95 e~~~~~~~~~l~~~l~~~--~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~ 172 (284)
+.+.+.++.. .++++|||||||..... ......+.. +...-.++.+++++|+....+....+
T Consensus 170 --------~i~~~~l~~~~~~~~D~VIIDTpG~l~~~--~~l~~~L~~-~~~~~~p~~vllVvda~~g~~~~~~~----- 233 (433)
T 2xxa_A 170 --------DIVNAALKEAKLKFYDVLLVDTAGRLHVD--EAMMDEIKQ-VHASINPVETLFVVDAMTGQDAANTA----- 233 (433)
T ss_dssp --------HHHHHHHHHHHHTTCSEEEEECCCCCTTC--HHHHHHHHH-HHHHSCCSEEEEEEETTBCTTHHHHH-----
T ss_pred --------HHHHHHHHHHHhCCCCEEEEECCCccccc--HHHHHHHHH-HHHhhcCcceeEEeecchhHHHHHHH-----
Confidence 1112222211 16799999999976521 122222221 22122356788899986433221111
Q ss_pred HHHHHHhcCCC-EEEEecCCcccc
Q 023298 173 SLSAMVQLELP-HVNILSKMDLVT 195 (284)
Q Consensus 173 ~l~~~~~~~~p-~IlVlNK~Dll~ 195 (284)
..+ +...+ .-+|+||+|...
T Consensus 234 --~~f-~~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 234 --KAF-NEALPLTGVVLTKVDGDA 254 (433)
T ss_dssp --HHH-HHHSCCCCEEEECTTSSS
T ss_pred --HHH-hccCCCeEEEEecCCCCc
Confidence 111 11234 346999999753
No 28
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.39 E-value=3e-12 Score=103.70 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=66.4
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK 190 (284)
..+.++||||+.+.. . +.. .+... +.+++++|+.. +..+ +..++..+.... ..+.|+++|+||
T Consensus 51 ~~~~l~D~~G~~~~~---~----~~~~~~~~~---~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 117 (167)
T 1kao_A 51 SVLEILDTAGTEQFA---S----MRDLYIKNG---QGFILVYSLVN---QQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117 (167)
T ss_dssp EEEEEEECCCTTCCH---H----HHHHHHHHC---SEEEEEEETTC---HHHHHHHHHHHHHHHHHTTTSCCCEEEEEEC
T ss_pred EEEEEEECCCchhhH---H----HHHHHhccC---CEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 357899999975421 1 222 23332 56888999863 3322 223332222222 247999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|+...+ +..... . .++...++ ..++++||++|.|++++++.|.+.+.
T Consensus 118 ~Dl~~~~-~~~~~~------------------~-------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 118 VDLESER-EVSSSE------------------G-------RALAEEWG-CPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp GGGGGGC-CSCHHH------------------H-------HHHHHHHT-SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred Ccccccc-cCCHHH------------------H-------HHHHHHhC-CCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 9986533 211000 0 01112223 47999999999999999999987653
No 29
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.39 E-value=3.7e-12 Score=103.53 Aligned_cols=113 Identities=10% Similarity=0.135 Sum_probs=68.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK~ 191 (284)
.++.++||||+.+.. .... ..+.. .+++++++|+.. +..+ +..++..+.... ..+.|+++|+||+
T Consensus 51 ~~~~l~D~~G~~~~~---~~~~---~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 118 (167)
T 1c1y_A 51 CMLEILDTAGTEQFT---AMRD---LYMKN---GQGFALVYSITA---QSTFNDLQDLREQILRVKDTEDVPMILVGNKC 118 (167)
T ss_dssp EEEEEEEECSSCSST---THHH---HHHHH---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHHCCSCCCEEEEEECT
T ss_pred EEEEEEECCChHHHH---HHHH---HHhcc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhhCcCCCcEEEEEECc
Confidence 367899999976522 2111 22333 257888898863 3222 222332222222 2479999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+..++ ....- .+.++...++...++++||++|.|++++++.|.+.+.
T Consensus 119 Dl~~~~-~~~~~-------------------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 119 DLEDER-VVGKE-------------------------QGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TCGGGC-CSCHH-------------------------HHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred cccccc-cCCHH-------------------------HHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHHh
Confidence 986533 11000 0012223344578999999999999999999987653
No 30
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.39 E-value=4.2e-12 Score=114.84 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=35.4
Q ss_pred EEEEEC---CC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 21 IKCVFS---PP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 21 ~~~viG---~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
++.|++ .| +||||++.+||.+|++.|+||++||+|||++.
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~~ 79 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATL 79 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCCH
Confidence 355554 78 99999999999999999999999999999873
No 31
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.38 E-value=1.4e-12 Score=116.23 Aligned_cols=169 Identities=17% Similarity=0.156 Sum_probs=86.0
Q ss_pred hhhccccccc-CceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCc-----------ccccccc-
Q 023298 8 LCKGYMSWLY-ALVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPV-----------AMDIREL- 72 (284)
Q Consensus 8 ~~~~~~~~~~-~~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~-----------~~dir~~- 72 (284)
.++|+.+--. +++++.|+|+ | +||||++.+||.+|+ +|+||++||+|||.+...+-. ...+.+.
T Consensus 15 ~~~~~~~~~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 93 (267)
T 3k9g_A 15 QTQGPGSMDNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEIL 93 (267)
T ss_dssp -----------CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHH
T ss_pred hhcCcccCCCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHh
Confidence 3555554432 3455666665 5 999999999999999 999999999999986432110 0011111
Q ss_pred ---ccHHHHh----hhcCcccCchhhhhhHhhh-hcHHHHHHHHhhccC-CCCEEEEeCCCCcccccccchHHHHHHHHH
Q 023298 73 ---ISLEDVM----EELGLGPNGGLIYCMEHLE-DNLDDWLAEELDNYL-DDDYLVFDCPGQIELFTHVPVLRNFVDHLK 143 (284)
Q Consensus 73 ---i~~~~vm----~~~~lgPng~l~~~~e~~~-~~~~~~l~~~l~~~~-~~~~viiDtPg~~e~~~~~~~~~~l~~~l~ 143 (284)
..+.+++ .++.+.|.+......+... ......+.+.++... +++||||||||..... ....+.
T Consensus 94 ~~~~~~~~~i~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD~pp~~~~~--------~~~~l~ 165 (267)
T 3k9g_A 94 KENVDIDSTIINVDNNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTLYYKYDYIVIDTNPSLDVT--------LKNALL 165 (267)
T ss_dssp TTSSCGGGGCEEEETTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTTCTTCSEEEEEECSSCSHH--------HHHHHT
T ss_pred cCCCCHHHhhccCCCCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHhhcCCCEEEEECcCCccHH--------HHHHHH
Confidence 1112221 2344455554433222110 000123444454432 6899999999966422 122343
Q ss_pred hcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhc--CCCEEEEecCCcc
Q 023298 144 SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL--ELPHVNILSKMDL 193 (284)
Q Consensus 144 ~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~--~~p~IlVlNK~Dl 193 (284)
. .+.++.++.+.... - .-+..+ +..+.+. +.++.+|+|++..
T Consensus 166 ~---aD~vivv~~~~~~s-~-~~~~~~---~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 166 C---SDYVIIPMTAEKWA-V-ESLDLF---NFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp T---CSEEEEEEESCTTH-H-HHHHHH---HHHHHTTTCCCCEEEEEEEECT
T ss_pred H---CCeEEEEeCCChHH-H-HHHHHH---HHHHHHHhccCCEEEEEecccC
Confidence 3 35566666654321 1 111122 2223333 4678899999843
No 32
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.38 E-value=1.8e-12 Score=106.90 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=68.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+...... ...+.+... +...+ .+++++++|+... ... ..++ ..+.+.+.|+++|.||+|+
T Consensus 50 ~~l~i~Dt~G~~~~~~~-~~~~~~~~~~~~~~~-~~~~i~v~D~~~~---~~~-~~~~---~~~~~~~~p~ilv~nK~Dl 120 (165)
T 2wji_A 50 EKFKVVDLPGVYSLTAN-SIDEIIARDYIINEK-PDLVVNIVDATAL---ERN-LYLT---LQLMEMGANLLLALNKMDL 120 (165)
T ss_dssp EEEEEEECCCCSCSSSS-SHHHHHHHHHHHHHC-CSEEEEEEETTCH---HHH-HHHH---HHHHHTTCCEEEEEECHHH
T ss_pred cEEEEEECCCcccCCCc-chhHHHHHHHHhcCC-CCEEEEEecCCch---hHh-HHHH---HHHHhcCCCEEEEEEchHh
Confidence 36789999998763221 122233332 22112 4678999998642 221 1121 2233458999999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.... .... + .+ ++.+.++ ..++++||++|.|++++++.|.+.+.
T Consensus 121 ~~~~-~~~~--~--~~----------------------~~~~~~~-~~~~~~SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 121 AKSL-GIEI--D--VD----------------------KLEKILG-VKVVPLSAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp HHHT-TCCC--C--HH----------------------HHHHHHT-SCEEECBGGGTBSHHHHHHHHHHHTT
T ss_pred cccc-Chhh--H--HH----------------------HHHHHhC-CCEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 6432 2110 0 00 1112223 57999999999999999999987663
No 33
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.38 E-value=3e-12 Score=122.83 Aligned_cols=118 Identities=8% Similarity=0.077 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHH-HhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l-~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+.... .......+.... .....+++++|++|+....+. +..+..++ .+.++|+++|+||+
T Consensus 48 ~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l------~~~~~p~ilv~NK~ 120 (439)
T 1mky_A 48 GKTFKLVDTCGVFDNP-QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFL------RKSTVDTILVANKA 120 (439)
T ss_dssp TEEEEEEECTTTTSSG-GGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHH------HHHTCCEEEEEESC
T ss_pred CeEEEEEECCCccccc-cchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHH------HHcCCCEEEEEeCC
Confidence 3468999999986421 111222332222 122345789999998754333 33344433 24689999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+.... . .... .++ ...++..++++||++|.|+.+|++.|.+.+++.
T Consensus 121 D~~~~~-~-~~~~--------------------------~~~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 121 ENLREF-E-REVK--------------------------PEL-YSLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp CSHHHH-H-HHTH--------------------------HHH-GGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred CCcccc-H-HHHH--------------------------HHH-HhcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 975320 0 0000 011 234555789999999999999999999988754
No 34
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=99.38 E-value=7.5e-12 Score=113.02 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=91.2
Q ss_pred cCceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC----CCCCcccccccc----ccHHHHhh-----h
Q 023298 17 YALVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN----FDYPVAMDIREL----ISLEDVME-----E 81 (284)
Q Consensus 17 ~~~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~----~~~~~~~dir~~----i~~~~vm~-----~ 81 (284)
.+++.++|.|+ | +||||++.|||.++++.|+||++||+|++... +..+....+.++ ..+++++. +
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~ 159 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIED 159 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTTSSCHHHHEEECSSTT
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCCCCCHHHcEEeCCCCC
Confidence 35677888887 5 99999999999999999999999999998753 222222222221 23444432 3
Q ss_pred cCcccCchhhhh-hHhhh-hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCC
Q 023298 82 LGLGPNGGLIYC-MEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQF 159 (284)
Q Consensus 82 ~~lgPng~l~~~-~e~~~-~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~ 159 (284)
+.+.|.|..... .+++. ..+.+.+. .+++ ++++|||||||...... ...+ ... .+.+++++.+..
T Consensus 160 l~vl~~g~~~~~~~ell~~~~l~~ll~-~l~~--~yD~VIIDtpp~~~~~d----~~~l---~~~---aD~vilVv~~~~ 226 (271)
T 3bfv_A 160 LDVLTSGPIPPNPSELITSRAFANLYD-TLLM--NYNFVIIDTPPVNTVTD----AQLF---SKF---TGNVVYVVNSEN 226 (271)
T ss_dssp EEEECCCSCCSCHHHHHTSHHHHHHHH-HHHH--HCSEEEEECCCTTTCSH----HHHH---HHH---HCEEEEEEETTS
T ss_pred EEEEECCCCCCCHHHHhChHHHHHHHH-HHHh--CCCEEEEeCCCCchHHH----HHHH---HHH---CCEEEEEEeCCC
Confidence 344555543221 23222 23322222 3332 67999999999754211 1111 112 245777777643
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEE-EEecCCcc
Q 023298 160 ITDVTKFISGCMASLSAMVQLELPHV-NILSKMDL 193 (284)
Q Consensus 160 ~~~~~~~i~~~l~~l~~~~~~~~p~I-lVlNK~Dl 193 (284)
. +... + ..++..+.+.+.+.+ +|+|++|.
T Consensus 227 ~-~~~~-~---~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 227 N-NKDE-V---KKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp C-CHHH-H---HHHHHHHHTTTCEEEEEEEEEECC
T ss_pred C-cHHH-H---HHHHHHHHhCCCCEEEEEEeCCcC
Confidence 3 2222 1 122334445667766 88999985
No 35
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.38 E-value=4.5e-12 Score=104.39 Aligned_cols=114 Identities=10% Similarity=0.139 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH-HHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l-~~~~~~~~p~IlVlNK~Dl 193 (284)
..+.++||||+.+. ...... .+.. .+++++++|+....+... +..++..+ ......+.|+++|+||+|+
T Consensus 57 ~~~~~~Dt~G~~~~---~~~~~~---~~~~---~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 57 ARLDILDTAGQEEF---GAMREQ---YMRA---GHGFLLVFAINDRQSFNE-VGKLFTQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp EEEEEEECCCTTTT---SCCHHH---HHHH---CSEEEEEEETTCHHHHHH-HHHHHHHHHHHHTSSCCCEEEEEECGGG
T ss_pred EEEEEEECCCchhh---HHHHHH---HHhh---CCEEEEEEeCCCHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 36789999997652 221221 2333 257888899863221111 33333322 2222357899999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
...+ ++.... . .++....+ ..++++||++|.|++++++.|.+.+.
T Consensus 127 ~~~~-~v~~~~------------------~-------~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 127 ESQR-QVPRSE------------------A-------SAFGASHH-VAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp GGGC-CSCHHH------------------H-------HHHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cccc-ccCHHH------------------H-------HHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 6533 221000 0 01112222 58999999999999999999987764
No 36
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.37 E-value=4.1e-12 Score=114.67 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=40.2
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFD 62 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~ 62 (284)
+++++.|.|.| |||||+|.|||.+|++.|+||++||+|||++.+.
T Consensus 1 ~MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~ 46 (289)
T 2afh_E 1 AMRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTR 46 (289)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSH
T ss_pred CceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHH
Confidence 35667778999 9999999999999999999999999999998653
No 37
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.37 E-value=3.1e-12 Score=112.76 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=34.8
Q ss_pred eEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 20 VIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 20 ~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
+++.|+|+ | +||||++.+||.+|++.|+||++||+||+..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 44 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLR 44 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 44666666 5 9999999999999999999999999999554
No 38
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.37 E-value=2.1e-12 Score=107.61 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=66.5
Q ss_pred CEEEEeCCCCcccccccchHH-HH---HHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 116 DYLVFDCPGQIELFTHVPVLR-NF---VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~-~l---~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
++.++||||+.+.. ..... .+ ...+.. .+++++++|+....+.... .++..+......+.|+++|+||+
T Consensus 53 ~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~---ad~~i~v~D~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~NK~ 125 (172)
T 2gj8_A 53 PLHIIDTAGLREAS--DEVERIGIERAWQEIEQ---ADRVLFMVDGTTTDAVDPA--EIWPEFIARLPAKLPITVVRNKA 125 (172)
T ss_dssp EEEEEECCCCSCCS--SHHHHHHHHHHHHHHHT---CSEEEEEEETTTCCCCSHH--HHCHHHHHHSCTTCCEEEEEECH
T ss_pred EEEEEECCCcccch--hHHHHHHHHHHHHHHHh---CCEEEEEEECCCCCCHHHH--HHHHHHHHhcccCCCEEEEEECc
Confidence 57899999986521 11111 12 222333 4679999999754332211 12111112222368999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGED 269 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d 269 (284)
|+.... . .+. ......++++||++|+|++++++.|.+.+...+.
T Consensus 126 Dl~~~~--~-~~~-------------------------------~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 169 (172)
T 2gj8_A 126 DITGET--L-GMS-------------------------------EVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTN 169 (172)
T ss_dssp HHHCCC--C-EEE-------------------------------EETTEEEEECCTTTCTTHHHHHHHHHHHC-----
T ss_pred cCCcch--h-hhh-------------------------------hccCCceEEEeCCCCCCHHHHHHHHHHHhhhccc
Confidence 985421 1 111 0123679999999999999999999998876543
No 39
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.37 E-value=5.3e-12 Score=121.65 Aligned_cols=154 Identities=12% Similarity=0.102 Sum_probs=85.9
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 96 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~ 96 (284)
+|..++++|++ |||||++.+||.+|++.|++|++|++||+.... +..+-.+.+ ..++ | ++....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa-------~eqL~~~~~---~~gv-p----v~~~~~ 163 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGA-------YHQLRQLLD---RYHI-E----VFGNPQ 163 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHH-------HHHHHHHHG---GGTC-E----EECCTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH-------HHHHHHHHH---hcCC-c----EEecCC
Confidence 58889999999 999999999999999999999999999976421 011100100 1111 0 000000
Q ss_pred hhhcHHHHHHHHhhccC--CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q 023298 97 LEDNLDDWLAEELDNYL--DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 174 (284)
Q Consensus 97 ~~~~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l 174 (284)
- ..-.+++.+.++... ++++|||||||... ........+........ ++.+++++|+....+... . .
T Consensus 164 ~-~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~--~d~~lm~el~~i~~~~~-pd~vlLVvDA~~gq~a~~-~------a 232 (443)
T 3dm5_A 164 E-KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHK--EDKALIEEMKQISNVIH-PHEVILVIDGTIGQQAYN-Q------A 232 (443)
T ss_dssp C-CCHHHHHHHHHHHHHHTTCSEEEEECCCCSS--CCHHHHHHHHHHHHHHC-CSEEEEEEEGGGGGGHHH-H------H
T ss_pred C-CCHHHHHHHHHHHHHhCCCCEEEEECCCccc--chHHHHHHHHHHHHhhc-CceEEEEEeCCCchhHHH-H------H
Confidence 0 000011112222111 57999999999765 22222222322121222 456899999864322111 1 1
Q ss_pred HHHHhcCCCEEEEecCCccccch
Q 023298 175 SAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 175 ~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
..+...-.+..+|+||+|...+.
T Consensus 233 ~~f~~~~~i~gVIlTKlD~~~~g 255 (443)
T 3dm5_A 233 LAFKEATPIGSIIVTKLDGSAKG 255 (443)
T ss_dssp HHHHHSCTTEEEEEECCSSCSSH
T ss_pred HHHHhhCCCeEEEEECCCCcccc
Confidence 22233345678999999986543
No 40
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.37 E-value=6.5e-12 Score=102.20 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+.... ... ...+.. .+++++++|+.. +..+ +..++..+......+.|+++|.||+|
T Consensus 55 ~~~~~~D~~G~~~~~---~~~---~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D 122 (170)
T 1r2q_A 55 VKFEIWDTAGQERYH---SLA---PMYYRG---AQAAIVVYDITN---EESFARAKNWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEECCSGGGG---GGH---HHHHTT---CSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHhh---hhh---HHhccC---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 468999999975421 111 112322 467899999863 3322 23333332222234689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+.... .... . . ..++...++ ..++++||++|.|++++++.|.+.+++
T Consensus 123 l~~~~-~~~~-~-----~-------------------~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 123 LANKR-AVDF-Q-----E-------------------AQSYADDNS-LLFMETSAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp GGGGC-CSCH-H-----H-------------------HHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHTSCC
T ss_pred Ccccc-ccCH-H-----H-------------------HHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 86432 1100 0 0 011112233 589999999999999999999988765
No 41
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.37 E-value=4.8e-12 Score=106.07 Aligned_cols=112 Identities=13% Similarity=0.205 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..+.++||||+.... ... ...+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 65 ~~~~i~Dt~G~~~~~---~~~---~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~D 132 (196)
T 3tkl_A 65 IKLQIWDTAGQERFR---TIT---SSYYRG---AHGIIVVYDVTD---QESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132 (196)
T ss_dssp EEEEEEEECCSGGGC---TTH---HHHHTT---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCcHhhh---hhH---HHHHhh---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 367899999975422 111 112323 468999999864 3332 33444433333344789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+...+ ...... ..++...++ ..++++||++|.|++++++.|.+.+.
T Consensus 133 l~~~~-~~~~~~-------------------------~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 133 LTTKK-VVDYTT-------------------------AKEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp CTTTC-CSCHHH-------------------------HHHHHHHTT-CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccccc-ccCHHH-------------------------HHHHHHHcC-CcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 87543 221100 011112233 57999999999999999888877654
No 42
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.37 E-value=6.5e-12 Score=102.68 Aligned_cols=118 Identities=9% Similarity=0.062 Sum_probs=68.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH-HHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~-~~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+..... +... .....+++++++|+....+.... ..++..+.. ....+.|+++|+||+|+
T Consensus 51 ~~~~~~Dt~G~~~~~~-------~~~~--~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl 120 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRP-------YWRC--YYSNTDAVIYVVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDM 120 (171)
T ss_dssp EEEEEEEECCCGGGGG-------GGGG--GCTTCSEEEEEEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred EEEEEEECCCChhhhH-------HHHH--HhccCCEEEEEEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCC
Confidence 4689999999754211 1111 11234689999998755433322 222211111 11157899999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
.... ...++. ..+.. ......+ ..++++||++|.|++++++.+.+.+.+
T Consensus 121 ~~~~-~~~~~~--------~~~~~--------------~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 121 EQAM-TSSEMA--------NSLGL--------------PALKDRK-WQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTCC-CHHHHH--------HHHTG--------------GGCTTSC-EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCC-CHHHHH--------HHhCc--------------hhccCCc-eEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 7542 111111 00100 0011122 479999999999999999999887643
No 43
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.37 E-value=8.1e-12 Score=105.31 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=70.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.++||||+.... ... ...+.. .+++++++|+....+. ..+..++..+......+.|+++|+||+|+.
T Consensus 72 ~~~~i~Dt~G~~~~~---~~~---~~~~~~---~d~iilV~d~~~~~s~-~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 141 (192)
T 2fg5_A 72 HKFLIWDTAGQERFH---SLA---PMYYRG---SAAAVIVYDITKQDSF-YTLKKWVKELKEHGPENIVMAIAGNKCDLS 141 (192)
T ss_dssp EEEEEEEECCSGGGG---GGT---HHHHTT---CSEEEEEEETTCTHHH-HHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEEcCCCchhhH---hhh---HHhhcc---CCEEEEEEeCCCHHHH-HHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 468999999975422 111 112322 3678999998643211 113334333333222478999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDA 270 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~ 270 (284)
..+ .... + .+.++...++ ..++++||+++.|++++++.|.+.++..+..
T Consensus 142 ~~~-~v~~------~-------------------~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~ 190 (192)
T 2fg5_A 142 DIR-EVPL------K-------------------DAKEYAESIG-AIVVETSAKNAINIEELFQGISRQIPPLDPH 190 (192)
T ss_dssp GGC-CSCH------H-------------------HHHHHHHTTT-CEEEECBTTTTBSHHHHHHHHHHTCC-----
T ss_pred ccc-ccCH------H-------------------HHHHHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHHHhhCCC
Confidence 422 1100 0 0012223344 5899999999999999999999998765543
No 44
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.37 E-value=2.9e-12 Score=104.34 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+.+.. ... ...+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 52 ~~~~~~D~~G~~~~~---~~~---~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 119 (170)
T 1ek0_A 52 VKFEIWDTAGQERFA---SLA---PXYYRN---AQAALVVYDVTK---PQSFIKARHWVKELHEQASKDIIIALVGNKID 119 (170)
T ss_dssp EEEEEEEECCSGGGG---GGH---HHHHTT---CSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEECCCChhhh---hhh---hhhhcc---CcEEEEEEecCC---hHHHHHHHHHHHHHHHhcCCCCcEEEEEECCC
Confidence 368999999975421 111 122333 367899999863 3332 22333332222234789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.... ........ .. .++...++ ..++++||++|.|++++++.|.+.++
T Consensus 120 l~~~~-~~~~v~~~-------------------~~---~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 120 XLQEG-GERKVARE-------------------EG---EKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp GGGSS-CCCCSCHH-------------------HH---HHHHHHHT-CEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred ccccc-cccCCCHH-------------------HH---HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 97542 11111100 00 11112233 48999999999999999999988764
No 45
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.36 E-value=3.4e-12 Score=113.52 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=38.2
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
+.+.|.|.| +||||++.|||.+|++.|+||++||+|||++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~ 44 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADST 44 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHH
Confidence 456668999 999999999999999999999999999999864
No 46
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.36 E-value=7.1e-12 Score=104.52 Aligned_cols=120 Identities=11% Similarity=-0.005 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+.+... +... .....+++++++|+....+... +..++..+... ...+.|+++|+||+|
T Consensus 61 ~~~~~~~Dt~G~~~~~~-------~~~~--~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~D 130 (186)
T 1ksh_A 61 GFKLNIWDVGGQKSLRS-------YWRN--YFESTDGLIWVVDSADRQRMQD-CQRELQSLLVEERLAGATLLIFANKQD 130 (186)
T ss_dssp TEEEEEEEECCSHHHHT-------TGGG--GCTTCSEEEEEEETTCGGGHHH-HHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhHHH-------HHHH--HhcCCCEEEEEEECcCHHHHHH-HHHHHHHHHhChhcCCCcEEEEEeCcc
Confidence 34689999999754211 1111 1223578999999875433222 22222211111 124789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+.... ...+.. +.+.. .... .....++++||++|.|++++++.|.+.+++.
T Consensus 131 l~~~~-~~~~~~--------~~~~~--------------~~~~-~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 131 LPGAL-SCNAIQ--------EALEL--------------DSIR-SHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp STTCC-CHHHHH--------HHTTG--------------GGCC-SSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCC-CHHHHH--------HHhCh--------------hhcc-CCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 96543 221111 00000 0001 1235799999999999999999999887654
No 47
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.36 E-value=9.3e-12 Score=101.25 Aligned_cols=110 Identities=16% Similarity=0.219 Sum_probs=66.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+.+.... . ...+.. .+++++++|+.. +..+ +..++..+.... .+.|+++|+||+|
T Consensus 54 ~~~~l~Dt~G~~~~~~~---~---~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~-~~~piilv~nK~D 120 (168)
T 1z2a_A 54 VRLMLWDTAGQEEFDAI---T---KAYYRG---AQACVLVFSTTD---RESFEAISSWREKVVAEV-GDIPTALVQNKID 120 (168)
T ss_dssp EEEEEECCTTGGGTTCC---C---HHHHTT---CCEEEEEEETTC---HHHHHTHHHHHHHHHHHH-CSCCEEEEEECGG
T ss_pred EEEEEEcCCCcHhHHHH---H---HHHhcC---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhC-CCCCEEEEEECcc
Confidence 46899999997653211 1 112322 467899999864 3222 223333222222 4789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+...+ ....- . +.++...++ ..++++||+++.|++++++.|.+.+
T Consensus 121 l~~~~-~~~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 121 LLDDS-CIKNE------E-------------------AEGLAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp GGGGC-SSCHH------H-------------------HHHHHHHHT-CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred cCccc-ccCHH------H-------------------HHHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHH
Confidence 87533 11000 0 011112333 4899999999999999999987754
No 48
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.36 E-value=6.3e-12 Score=103.96 Aligned_cols=122 Identities=12% Similarity=0.080 Sum_probs=66.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HH-HHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--IS-GCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~-~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+.++||||+........ ..+ ...+++++++|+.. +..+ +. .++..+.... .+.|+++|+||+
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~------~~~---~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~ 122 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRP------LSY---RGADVFILAFSLIS---KASYENVSKKWIPELKHYA-PGVPIVLVGTKL 122 (182)
T ss_dssp --CEEECCCC-CTTTTTGG------GGG---TTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHC-TTCCEEEEEECH
T ss_pred EEEEEEECCCChhhhhhHH------hhc---cCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHhC-CCCCEEEEEech
Confidence 3567999999764221100 112 22468999999863 3333 11 2322222221 278999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+.... ....... .... + . .....++...++...++++||++|.|++++++.|.+.+.
T Consensus 123 Dl~~~~-~~~~~~~-~~~~----v---~-------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 123 DLRDDK-QFFIDHP-GAVP----I---T-------TVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHTCH-HHHHHC---CCC----C---C-------HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred hhhcCc-ccccccc-cCCC----C---C-------HHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 997644 2210000 0000 0 0 000112223445568999999999999999999987653
No 49
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.36 E-value=5.7e-12 Score=103.58 Aligned_cols=113 Identities=12% Similarity=0.175 Sum_probs=69.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..+.++||||+..... .. ...+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 63 ~~~~~~Dt~G~~~~~~---~~---~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 130 (179)
T 2y8e_A 63 VRLQLWDTAGQERFRS---LI---PSYIRD---STVAVVVYDITN---TNSFHQTSKWIDDVRTERGSDVIIMLVGNKTD 130 (179)
T ss_dssp EEEEEEEECCSGGGGG---GS---HHHHHT---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHHTTSSEEEEEEECGG
T ss_pred EEEEEEECCCcHHHHH---HH---HHHhcC---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCc
Confidence 3689999999754221 11 122333 367899999863 3322 33343333333345789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+...+ +..... . .+.....+ ..++++||++|.|++++++.|.+.++.
T Consensus 131 l~~~~-~~~~~~------------------~-------~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 131 LSDKR-QVSTEE------------------G-------ERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp GGGGC-CSCHHH------------------H-------HHHHHHHT-CEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred ccccC-cCCHHH------------------H-------HHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 86533 211000 0 01112223 589999999999999999999987754
No 50
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.35 E-value=1.2e-11 Score=99.72 Aligned_cols=111 Identities=13% Similarity=0.177 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlNK~ 191 (284)
.++.++||||+.+. ..... ..+.. .+.+++++|+.. +..+ +..++..+..... .+.|+++|+||+
T Consensus 51 ~~~~~~D~~G~~~~---~~~~~---~~~~~---~~~~i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~ 118 (166)
T 2ce2_X 51 CLLDILDTAGQEEY---SAMRD---QYMRT---GEGFLCVFAINN---TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKS 118 (166)
T ss_dssp EEEEEEECCCCSSC---CHHHH---HHHHH---CSEEEEEEETTC---HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECT
T ss_pred EEEEEEECCCchhh---hHHHH---Hhhcc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEch
Confidence 36789999997642 11111 12333 256888888753 3322 2333333222222 379999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+.... ...+.. .++...++ ..++++||++|.|++++++.|.+.+.
T Consensus 119 Dl~~~~-~~~~~~--------------------------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 119 DLAART-VESRQA--------------------------QDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TCSCCC-SCHHHH--------------------------HHHHHHHT-CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred hhhhcc-cCHHHH--------------------------HHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 987532 111100 11112233 47999999999999999999987654
No 51
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=4.7e-12 Score=104.57 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=66.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
.++.++||||+.... .+.. .+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+
T Consensus 60 ~~~~~~Dt~G~~~~~-------~~~~~~~~~---~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 126 (180)
T 2g6b_A 60 VKLQMWDTAGQERFR-------SVTHAYYRD---AHALLLLYDVTN---KASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126 (180)
T ss_dssp EEEEEEECCCC---------------CCGGG---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred EEEEEEeCCCcHHHH-------HHHHHHccC---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECc
Confidence 367899999965411 1111 1222 467899999863 3322 3334333333333578999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+...+ .+.... . .++...++ ..++++||+++.|++++++.|.+.+.
T Consensus 127 Dl~~~~-~~~~~~------------------~-------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 127 DSAHER-VVKRED------------------G-------EKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp STTSCC-CSCHHH------------------H-------HHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccCccc-ccCHHH------------------H-------HHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 997533 211000 0 01112233 47999999999999999999987764
No 52
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.35 E-value=1.6e-11 Score=106.59 Aligned_cols=123 Identities=11% Similarity=0.151 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCcccccccc--hHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhc--CCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVP--VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQL--ELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~--~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~--~~p~IlVlNK 190 (284)
.++.++||||+.+...... .....+..+. ...+++++++|+....+.. .......+..+... +.|+++|+||
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~l~~~~~~~piilv~nK 151 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALA--HINGVILFIIDISEQCGLT--IKEQINLFYSIKSVFSNKSIVIGFNK 151 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHH--TSSEEEEEEEETTCTTSSC--HHHHHHHHHHHHTCC-CCCEEEEEEC
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhh--ccccEEEEEEecccccCcc--hHHHHHHHHHHHHhhcCCcEEEEEeC
Confidence 4689999999864211111 0111122221 2346899999997542211 11111112223333 7899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+...+ ++..... ..+.++....+ ...++++||++|+|++++++.|.+.+
T Consensus 152 ~Dl~~~~-~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 152 IDKCNMD-SLSIDNK----------------------LLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp GGGCC---CCCHHHH----------------------HHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCCch-hhHHHHH----------------------HHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 9997543 2211100 00112223332 36899999999999999999988765
No 53
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.35 E-value=7.7e-12 Score=112.02 Aligned_cols=116 Identities=10% Similarity=0.076 Sum_probs=73.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.++||||+....... ..+.+.+.+-.....+++++++|+.... ... .....+...+.|+++|+||+|+
T Consensus 51 ~~~~~l~DtpG~~~~~~~~-~~e~v~~~~~~~~~~d~ii~V~D~t~~~---~~~----~~~~~l~~~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSS-IDEKIARDYLLKGDADLVILVADSVNPE---QSL----YLLLEILEMEKKVILAMTAIDE 122 (258)
T ss_dssp TEEEEEEECCCCSSCCSSS-HHHHHHHHHHHHSCCSEEEEEEETTSCH---HHH----HHHHHHHTTTCCEEEEEECHHH
T ss_pred CeEEEEEECCCcCccCCCC-HHHHHHHHHHhhcCCCEEEEEeCCCchh---hHH----HHHHHHHhcCCCEEEEEECcCC
Confidence 3478999999987643322 2333434332112357899999997542 211 1123344578999999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
..++ .+.. +.. ++ ...++ ..++++||++|.|+++|++.|.+..+
T Consensus 123 ~~~~-~i~~----~~~---------------~l-------~~~lg-~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 123 AKKT-GMKI----DRY---------------EL-------QKHLG-IPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHT-TCCB----CHH---------------HH-------HHHHC-SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCcc-chHH----HHH---------------HH-------HHHcC-CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 6533 2211 000 11 12223 58999999999999999999998765
No 54
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.35 E-value=4.5e-12 Score=103.36 Aligned_cols=112 Identities=14% Similarity=0.180 Sum_probs=68.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+.... ... ...+.. .+++++++|+.. +..+ +..++..+........|+++|.||+|
T Consensus 55 ~~~~~~Dt~G~~~~~---~~~---~~~~~~---~~~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~D 122 (170)
T 1z0j_A 55 HKFLIWDTAGLERFR---ALA---PMYYRG---SAAAIIVYDITK---EETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 122 (170)
T ss_dssp EEEEEEEECCSGGGG---GGT---HHHHTT---CSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTSEEEEEEECTT
T ss_pred EEEEEEcCCCchhhh---ccc---HhhCcC---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhCCCCCcEEEEEECCc
Confidence 468999999975421 111 112322 367899999863 3222 23343333333234678999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+...+ +...-. ..++...++ ..++++||++|.|++++++.|.+.++
T Consensus 123 l~~~~-~v~~~~-------------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 123 LTDVR-EVMERD-------------------------AKDYADSIH-AIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp CGGGC-CSCHHH-------------------------HHHHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ccccc-ccCHHH-------------------------HHHHHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 97533 211000 011112333 58999999999999999999988775
No 55
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.35 E-value=9e-12 Score=104.67 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=69.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh--------cCCCEE
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ--------LELPHV 185 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~--------~~~p~I 185 (284)
...+.++||||+..... +... .....+++++++|+....+-.. +..++..+..... .+.|++
T Consensus 62 ~~~~~i~Dt~G~~~~~~-------~~~~--~~~~~d~ii~v~D~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~pii 131 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRG-------LWET--YYDNIDAVIFVVDSSDHLRLCV-VKSEIQAMLKHEDIRRELPGGGRVPFL 131 (199)
T ss_dssp TEEEEEEEECCSGGGGG-------GGGG--GCTTCSEEEEEEETTCGGGHHH-HHHHHHHHHTSHHHHSBCTTSCBCCEE
T ss_pred CEEEEEEECCCCHhHHH-------HHHH--HHhcCCEEEEEEECCcHHHHHH-HHHHHHHHHhChhhhhcccccCCCCEE
Confidence 45789999999865221 1111 1223578999999974432222 2222222111111 278999
Q ss_pred EEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 186 NILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 186 lVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|+||+|+.... ...++. +.+. +..+... ....++++||++|+|++++++.|.+.+.
T Consensus 132 lv~NK~Dl~~~~-~~~~~~--------~~~~-------------~~~~~~~-~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 132 FFANKMDAAGAK-TAAELV--------EILD-------------LTTLMGD-HPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp EEEECTTSTTCC-CHHHHH--------HHHT-------------HHHHHTT-SCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCCC-CHHHHH--------HHhc-------------chhhccC-CeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 999999997643 222221 0010 0011122 2368999999999999999999987754
No 56
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.34 E-value=1.4e-11 Score=101.81 Aligned_cols=115 Identities=13% Similarity=0.184 Sum_probs=68.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+.... ... ...+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 61 ~~~~i~Dt~G~~~~~---~~~---~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 128 (181)
T 2efe_B 61 VKFEIWDTAGQERYH---SLA---PMYYRG---AAAAIIVFDVTN---QASFERAKKWVQELQAQGNPNMVMALAGNKSD 128 (181)
T ss_dssp EEEEEEECCCSGGGG---GGT---HHHHTT---CSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCChhhh---hhh---HHHhcc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCc
Confidence 468999999975421 111 112322 367899999863 3332 33333332222223789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
+...+ ++..- .+.++...++ ..++++||++|.|++++++.|.+.+..-+
T Consensus 129 l~~~~-~~~~~-------------------------~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 129 LLDAR-KVTAE-------------------------DAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp CTTTC-CSCHH-------------------------HHHHHHHHTT-CEEEECCSSSCTTHHHHHHHHHHTCC---
T ss_pred ccccc-cCCHH-------------------------HHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 96533 21100 0011122333 57999999999999999999999886543
No 57
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.34 E-value=1.4e-11 Score=100.32 Aligned_cols=113 Identities=9% Similarity=0.104 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh--cCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ--LELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~--~~~p~IlVlNK 190 (284)
..+.++||||+.+.. . .....+.. .+++++++|+.. +..+ +..++..+..... .+.|+++|+||
T Consensus 51 ~~~~~~Dt~G~~~~~---~---~~~~~~~~---~~~~i~v~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK 118 (172)
T 2erx_A 51 CTLQITDTTGSHQFP---A---MQRLSISK---GHAFILVYSITS---RQSLEELKPIYEQICEIKGDVESIPIMLVGNK 118 (172)
T ss_dssp EEEEEEECCSCSSCH---H---HHHHHHHH---CSEEEEEEETTC---HHHHHTTHHHHHHHHHHHC---CCCEEEEEEC
T ss_pred EEEEEEECCCchhhH---H---HHHHhccc---CCEEEEEEECcC---HHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEc
Confidence 367999999976421 1 11122333 357889999863 3222 2222222222211 36899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+|+...+ ++.... . .++...++ ..++++||++|.|++++++.|.+.+..
T Consensus 119 ~Dl~~~~-~v~~~~------------------~-------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 119 CDESPSR-EVQSSE------------------A-------EALARTWK-CAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp GGGGGGC-CSCHHH------------------H-------HHHHHHHT-CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred ccccccc-ccCHHH------------------H-------HHHHHHhC-CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 9986543 221100 0 01112223 479999999999999999999987753
No 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.34 E-value=9.9e-12 Score=100.72 Aligned_cols=110 Identities=13% Similarity=0.206 Sum_probs=65.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlNK 190 (284)
.++.++||||+.+. .. +.. .+.. .+++++++|+.. +..+ +..++..+..... .+.|+++|+||
T Consensus 52 ~~~~l~D~~G~~~~---~~----~~~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 118 (168)
T 1u8z_A 52 VQIDILDTAGQEDY---AA----IRDNYFRS---GEGFLCVFSITE---MESFAATADFREQILRVKEDENVPFLLVGNK 118 (168)
T ss_dssp EEEEEEECCC---C---HH----HHHHHHHH---CSEEEEEEETTC---HHHHHHHHHHHHHHHHHHCCTTSCEEEEEEC
T ss_pred EEEEEEECCCcchh---HH----HHHHHhhc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEC
Confidence 36889999997541 11 222 2333 357888999863 3332 2333333222222 37899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+...+ +... +. +.+....++ ..++++||++|.|++++++.+.+.+
T Consensus 119 ~Dl~~~~-~~~~------~~-------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 119 SDLEDKR-QVSV------EE-------------------AKNRADQWN-VNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp GGGGGGC-CSCH------HH-------------------HHHHHHHHT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccC-ccCH------HH-------------------HHHHHHHcC-CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 9986533 2100 00 011122333 4799999999999999999988765
No 59
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.34 E-value=2.3e-11 Score=99.04 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+.+.... . ...+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 52 ~~~~l~D~~G~~~~~~~---~---~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 119 (170)
T 1g16_A 52 VKLQIWDTAGQERFRTI---T---TAYYRG---AMGIILVYDITD---ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 119 (170)
T ss_dssp EEEEEECCTTGGGTSCC---C---HHHHTT---EEEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCChhhhhh---H---HHHhcc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 36789999997542211 1 112322 468999999863 3222 23333333333334789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+..+. ...+.. .++...++ ..++++||++|.|++++++.|.+.+.+
T Consensus 120 l~~~~-~~~~~~--------------------------~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 120 METRV-VTADQG--------------------------EALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp CTTCC-SCHHHH--------------------------HHHHHHHT-CCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcCc-cCHHHH--------------------------HHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 84322 100000 11112233 479999999999999999999887653
No 60
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.34 E-value=1.8e-11 Score=99.93 Aligned_cols=112 Identities=13% Similarity=0.136 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+.+... +... .....+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 55 ~~l~i~Dt~G~~~~~~-------~~~~--~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 122 (170)
T 1z08_A 55 VNLAIWDTAGQERFHA-------LGPI--YYRDSNGAILVYDITD---EDSFQKVKNWVKELRKMLGNEICLCIVGNKID 122 (170)
T ss_dssp EEEEEEECCCC--------------CC--SSTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHHGGGSEEEEEEECGG
T ss_pred EEEEEEECCCcHhhhh-------hHHH--HhccCCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEECcc
Confidence 3678999999654211 1111 1123468899999863 3322 33444444444445789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+..++ .... + ...++....+ ..++++||++|.|++++++.|.+.+.
T Consensus 123 l~~~~-~~~~------~-------------------~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 123 LEKER-HVSI------Q-------------------EAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp GGGGC-CSCH------H-------------------HHHHHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccc-ccCH------H-------------------HHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 96532 1110 0 0011122333 58899999999999999999987654
No 61
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.34 E-value=4.6e-12 Score=122.13 Aligned_cols=161 Identities=12% Similarity=0.153 Sum_probs=88.7
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHL 97 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~ 97 (284)
+..|+++|.+ |||||+...|.. ++...+.-.|+.+.-.. . .
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~------~~~~~v~~~~g~t~~~~-------~-----------~-------------- 64 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAG------ERISIVEDTPGVTRDRI-------Y-----------S-------------- 64 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEE------EEEC-----------CE-------E-----------E--------------
T ss_pred CCEEEEECCCCCcHHHHHHHHhC------CCCcccCCCCCcceeEE-------E-----------E--------------
Confidence 4459999999 999999998854 44444443343321000 0 0
Q ss_pred hhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHH-hcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHH
Q 023298 98 EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDV-TKFISGCMASLS 175 (284)
Q Consensus 98 ~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~ 175 (284)
.++. .+..+.++||||+.. .......++..... .....++++|++|+....++ +..+..+
T Consensus 65 ----------~~~~-~~~~~~liDT~G~~~--~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~----- 126 (456)
T 4dcu_A 65 ----------SAEW-LNYDFNLIDTGGIDI--GDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKI----- 126 (456)
T ss_dssp ----------ECTT-CSSCCEEECCCC--------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHH-----
T ss_pred ----------EEEE-CCceEEEEECCCCCC--cchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHH-----
Confidence 0010 145789999999753 22222333333221 11224689999998754333 3334333
Q ss_pred HHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHH
Q 023298 176 AMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRY 255 (284)
Q Consensus 176 ~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~ 255 (284)
+.+.++|+++|+||+|+........++. ..++...+++||++|.|+.+
T Consensus 127 -l~~~~~pvilV~NK~D~~~~~~~~~e~~-------------------------------~lg~~~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 127 -LYRTKKPVVLAVNKLDNTEMRANIYDFY-------------------------------SLGFGEPYPISGTHGLGLGD 174 (456)
T ss_dssp -HTTCCSCEEEEEECC---------CCSG-------------------------------GGSSSSEEECCTTTCTTHHH
T ss_pred -HHHcCCCEEEEEECccchhhhhhHHHHH-------------------------------HcCCCceEEeecccccchHH
Confidence 3357899999999999864321112221 23455678999999999999
Q ss_pred HHHHHHHhcCCC
Q 023298 256 VLSQIDNCIQWG 267 (284)
Q Consensus 256 Ll~~I~~~l~~g 267 (284)
|++.+.+.++..
T Consensus 175 L~~~i~~~l~~~ 186 (456)
T 4dcu_A 175 LLDAVAEHFKNI 186 (456)
T ss_dssp HHHHHHTTGGGS
T ss_pred HHHHHHhhcccc
Confidence 999999887643
No 62
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.34 E-value=2.2e-11 Score=100.29 Aligned_cols=113 Identities=17% Similarity=0.183 Sum_probs=63.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh----cCCCEEEEe
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ----LELPHVNIL 188 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~----~~~p~IlVl 188 (284)
.++.++||||+.... . +... .....+++++++|+.. +..+ +..++..+..... .+.|+++|+
T Consensus 58 ~~~~l~Dt~G~~~~~---~----~~~~--~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 125 (182)
T 1ky3_A 58 ATMQVWDTAGQERFQ---S----LGVA--FYRGADCCVLVYDVTN---ASSFENIKSWRDEFLVHANVNSPETFPFVILG 125 (182)
T ss_dssp EEEEEECCC-----------------C--CSTTCCEEEEEEETTC---HHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEE
T ss_pred EEEEEEECCCChHhh---h----hhHH--HhhcCCEEEEEEECCC---hHHHHHHHHHHHHHHHHhcccCcCCCcEEEEE
Confidence 367999999965411 1 1111 1223468999999863 3322 3333333333222 578999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
||+|+...+ ...... .+.++........++++||++|.|++++++.|.+.+
T Consensus 126 nK~Dl~~~~-~~v~~~------------------------~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 126 NKIDAEESK-KIVSEK------------------------SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp ECTTSCGGG-CCSCHH------------------------HHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ECCcccccc-ccCCHH------------------------HHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 999986432 110000 001111223457899999999999999999987754
No 63
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.34 E-value=9.9e-12 Score=110.82 Aligned_cols=158 Identities=12% Similarity=-0.001 Sum_probs=84.0
Q ss_pred ceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC----CCCCcc------ccccccccHHHHhhhcCccc
Q 023298 19 LVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN----FDYPVA------MDIRELISLEDVMEELGLGP 86 (284)
Q Consensus 19 ~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~----~~~~~~------~dir~~i~~~~vm~~~~lgP 86 (284)
++++.|+|. | +||||++.|||.+|++.|+||++||+|||++. +..... -.+.... +...+..+.|
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~l~vlp 94 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVL---TQKYGIKVMS 94 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEE---CTTTCCEEEC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccc---cCCCCeEEEe
Confidence 345666655 6 99999999999999999999999999999853 222111 0011110 0011223334
Q ss_pred CchhhhhhHh-hh---hcHHHHHHHHhhcc--CCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC
Q 023298 87 NGGLIYCMEH-LE---DNLDDWLAEELDNY--LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 160 (284)
Q Consensus 87 ng~l~~~~e~-~~---~~~~~~l~~~l~~~--~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~ 160 (284)
.+......+. +. ....+.+++.++.. .+++||||||||..... .... ..+..+ +.++.++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~-----~~~~-~~~~~a---D~viiv~~~~~~ 165 (262)
T 2ph1_A 95 MQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDA-----PLTV-MQDAKP---TGVVVVSTPQEL 165 (262)
T ss_dssp GGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSH-----HHHH-HHHHCC---SEEEEEECSSSC
T ss_pred ccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchH-----HHHH-HhhccC---CeEEEEecCccc
Confidence 3332211110 00 01113344444432 26899999999976421 0001 112122 445556655432
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEE-EEecCCcc
Q 023298 161 TDVTKFISGCMASLSAMVQLELPHV-NILSKMDL 193 (284)
Q Consensus 161 ~~~~~~i~~~l~~l~~~~~~~~p~I-lVlNK~Dl 193 (284)
+... ....+..+.+.+.+.+ +|+|+.|.
T Consensus 166 -s~~~----~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 166 -TAVI----VEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp -CHHH----HHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred -hHHH----HHHHHHHHHhCCCCEEEEEECCCcc
Confidence 2222 2222333445677887 89999885
No 64
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.33 E-value=1.3e-11 Score=102.42 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=65.4
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK~D 192 (284)
.+.++||||+.+.. .... ..+.. .+++++++|+.. +..+ +..++..+.... ..+.|+++|+||+|
T Consensus 53 ~~~i~Dt~G~~~~~---~~~~---~~~~~---~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 120 (189)
T 4dsu_A 53 LLDILDTAGQEEYS---AMRD---QYMRT---GEGFLCVFAINN---TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120 (189)
T ss_dssp EEEEEECCCC---C---TTHH---HHHHH---CSEEEEEEETTC---HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTT
T ss_pred EEEEEECCCcHHHH---HHHH---HHHhc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcc
Confidence 56789999976522 2111 12333 257888898863 3332 333333222222 24789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+.... ...+.. .++...++ ..++++||++|.|++++++.|.+.+..
T Consensus 121 l~~~~-~~~~~~--------------------------~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 121 LPSRT-VDTKQA--------------------------QDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp SSSCS-SCHHHH--------------------------HHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred Ccccc-cCHHHH--------------------------HHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 86432 111111 11112233 579999999999999999999887653
No 65
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.33 E-value=2.1e-11 Score=106.08 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=81.8
Q ss_pred eEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC----CCCCcc-ccccccc----cHHHHh-----hhcC
Q 023298 20 VIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN----FDYPVA-MDIRELI----SLEDVM-----EELG 83 (284)
Q Consensus 20 ~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~----~~~~~~-~dir~~i----~~~~vm-----~~~~ 83 (284)
+.+.|+|+ | +||||++.+||.+|++.|+||++||+|||... +..+.. ..+.+.+ .+++.+ .+..
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~~l~ 82 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFDNVY 82 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSSTTEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCCCEE
Confidence 34666665 5 99999999999999999999999999997542 111111 1111111 122222 1223
Q ss_pred cccCchhhhhhHhh-hhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC
Q 023298 84 LGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD 162 (284)
Q Consensus 84 lgPng~l~~~~e~~-~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~ 162 (284)
+.|........+.. ...+.+.+ +.+.+ ++++|+|||||..... ....+.. .+.+++++...
T Consensus 83 ~lp~~~~~~~~~~~~~~~l~~~l-~~l~~--~yD~viiD~~~~~~~~--------~~~~~~~---ad~vi~v~~~~---- 144 (237)
T 1g3q_A 83 VLPGAVDWEHVLKADPRKLPEVI-KSLKD--KFDFILIDCPAGLQLD--------AMSAMLS---GEEALLVTNPE---- 144 (237)
T ss_dssp EECCCCSHHHHHHCCGGGHHHHH-HTTGG--GCSEEEEECCSSSSHH--------HHHHHTT---CSEEEEEECSC----
T ss_pred EEeCCCccchhhhcCHHHHHHHH-HHHHh--cCCEEEEECCCCcCHH--------HHHHHHH---CCeEEEEecCC----
Confidence 34422111111111 22231222 23332 6899999999965411 1222333 34566666653
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CEEEEecCCccc
Q 023298 163 VTKFISGCMASLSAMVQLEL-PHVNILSKMDLV 194 (284)
Q Consensus 163 ~~~~i~~~l~~l~~~~~~~~-p~IlVlNK~Dll 194 (284)
... +......+..+.+.+. ..-+|+||++..
T Consensus 145 ~~~-~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 145 ISC-LTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp HHH-HHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred ccc-HHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 222 2222222333334443 456789999853
No 66
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.33 E-value=9.1e-12 Score=112.63 Aligned_cols=117 Identities=11% Similarity=0.134 Sum_probs=72.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.++||||+....... ..+.+.+..-.....+++++++|+... .... .....+...+.|+++|+||+|+.
T Consensus 49 ~~l~l~DtpG~~~~~~~~-~~e~v~~~~~~~~~~d~vi~V~D~t~~---e~~~----~~~~~l~~~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 49 KDLEIQDLPGIYSMSPYS-PEAKVARDYLLSQRADSILNVVDATNL---ERNL----YLTTQLIETGIPVTIALNMIDVL 120 (272)
T ss_dssp TTEEEEECCCCSCSSCSS-HHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHH----HHHHHHHHTCSCEEEEEECHHHH
T ss_pred CeEEEEECCCcCccCCCC-hHHHHHHHHHhcCCCCEEEEEecCCch---HhHH----HHHHHHHhcCCCEEEEEEChhhC
Confidence 478999999987643222 233343333221235789999998642 2221 11223345789999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
.+. .+.. +.. .|. +.++ ..++++||++|.|+++|++.|.+.+...
T Consensus 121 ~~~-~~~~----~~~---------------~l~-------~~lg-~~vi~~SA~~g~gi~el~~~i~~~~~~~ 165 (272)
T 3b1v_A 121 DGQ-GKKI----NVD---------------KLS-------YHLG-VPVVATSALKQTGVDQVVKKAAHTTTST 165 (272)
T ss_dssp HHT-TCCC----CHH---------------HHH-------HHHT-SCEEECBTTTTBSHHHHHHHHHHSCTTT
T ss_pred CcC-CcHH----HHH---------------HHH-------HHcC-CCEEEEEccCCCCHHHHHHHHHHHHhhc
Confidence 433 2211 100 111 1122 5799999999999999999999887543
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.33 E-value=6.3e-12 Score=106.16 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=69.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+... .. .....+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 75 ~~l~l~Dt~G~~~~---~~---~~~~~~~~---~d~iilV~D~~~---~~s~~~~~~~~~~i~~~~~~~~piilV~NK~D 142 (192)
T 2il1_A 75 IRLQIWDTAGQERF---NS---ITSAYYRS---AKGIILVYDITK---KETFDDLPKWMKMIDKYASEDAELLLVGNKLD 142 (192)
T ss_dssp EEEEEEEECCSGGG---HH---HHHHHHHH---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHH---HH---HHHHHhcC---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 36899999996541 11 11222333 357899999864 3332 33333333333334789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+...+ ++..- .+.++...+....++++||++|.|++++++.|.+.+
T Consensus 143 l~~~~-~v~~~-------------------------~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 143 CETDR-EITRQ-------------------------QGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp GGGGC-CSCHH-------------------------HHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccccc-ccCHH-------------------------HHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 86532 21100 001122333457899999999999999999987654
No 68
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.33 E-value=3.3e-11 Score=112.10 Aligned_cols=199 Identities=9% Similarity=0.060 Sum_probs=107.7
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcc----cCch
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLG----PNGG 89 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lg----Png~ 89 (284)
...+..++.++|++ |||||+...|+.++...+.++.++..||+.....-.. ..++..+ ..+....++- |...
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~-~~~~~~i--~~v~q~~~~~~~~~~~~~ 127 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSI-LGDKTRM--ARLAIDRNAFIRPSPSSG 127 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCS-SCCGGGS--TTGGGCTTEEEECCCCCS
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccch-HHHhhhh--eeeccCcccccccCcccc
Confidence 34556679999999 9999999999999988889999999999764321000 0111111 0010111110 1100
Q ss_pred hhhhhHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHH
Q 023298 90 LIYCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISG 169 (284)
Q Consensus 90 l~~~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~ 169 (284)
-+.+ ......+.. ..++. .+.+++||||||..+. . . .+. ...+++++++|+....+. ..+..
T Consensus 128 ~l~G--~tr~~~e~~--~~~~~-~~~~~iliDT~Gi~~~--~----~----~v~--~~~d~vl~v~d~~~~~~~-~~i~~ 189 (337)
T 2qm8_A 128 TLGG--VAAKTRETM--LLCEA-AGFDVILVETVGVGQS--E----T----AVA--DLTDFFLVLMLPGAGDEL-QGIKK 189 (337)
T ss_dssp SHHH--HHHHHHHHH--HHHHH-TTCCEEEEEECSSSSC--H----H----HHH--TTSSEEEEEECSCC-------CCT
T ss_pred cccc--hHHHHHHHH--HHHhc-CCCCEEEEECCCCCcc--h----h----hHH--hhCCEEEEEEcCCCcccH-HHHHH
Confidence 0000 000111011 01221 2679999999997651 1 0 121 224678899987522110 00100
Q ss_pred HHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC------CceEE
Q 023298 170 CMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS------MVSFM 243 (284)
Q Consensus 170 ~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~------~~~~i 243 (284)
.. .+.|.++|+||+|+........... ..+...+.... ..+++
T Consensus 190 ------~i--~~~~~ivvlNK~Dl~~~~~~s~~~~-----------------------~~l~~a~~l~~~~~~~~~~~vl 238 (337)
T 2qm8_A 190 ------GI--FELADMIAVNKADDGDGERRASAAA-----------------------SEYRAALHILTPPSATWTPPVV 238 (337)
T ss_dssp ------TH--HHHCSEEEEECCSTTCCHHHHHHHH-----------------------HHHHHHHTTBCCSBTTBCCCEE
T ss_pred ------HH--hccccEEEEEchhccCchhHHHHHH-----------------------HHHHHHHHhccccccCCCCCEE
Confidence 00 1347799999999764330111111 01111111111 35789
Q ss_pred EEeccCcccHHHHHHHHHHhcC
Q 023298 244 PLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 244 piSa~~~~~l~~Ll~~I~~~l~ 265 (284)
++||+++.|+++|++.|.+..+
T Consensus 239 ~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 239 TISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 69
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.33 E-value=1.2e-11 Score=111.01 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcC-CCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLE-LPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~-~p~IlVlNK~D 192 (284)
+.++.++||||+...... .....+.+..-.....+++++++|+... .... .....+...+ .|+++|+||+|
T Consensus 49 ~~~~~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~----~~~~~~~~~~~~p~ilv~NK~D 120 (271)
T 3k53_A 49 EKEFLVVDLPGIYSLTAH-SIDELIARNFILDGNADVIVDIVDSTCL---MRNL----FLTLELFEMEVKNIILVLNKFD 120 (271)
T ss_dssp TEEEEEEECCCCSCCCSS-CHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHH----HHHHHHHHTTCCSEEEEEECHH
T ss_pred CceEEEEeCCCccccccC-CHHHHHHHHhhhccCCcEEEEEecCCcc---hhhH----HHHHHHHhcCCCCEEEEEEChh
Confidence 346899999998764332 2223333333222235789999998643 1111 1122334556 99999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+..++ ...... . .+ . +.++ ..++|+||++|.|++++++.|.+.+...
T Consensus 121 l~~~~-~~~~~~----~---------------~l----~---~~lg-~~~~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 121 LLKKK-GAKIDI----K---------------KM----R---KELG-VPVIPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp HHHHH-TCCCCH----H---------------HH----H---HHHS-SCEEECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred cCccc-ccHHHH----H---------------HH----H---HHcC-CcEEEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 86533 211100 0 11 1 1222 6799999999999999999999887654
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.33 E-value=2.7e-11 Score=101.32 Aligned_cols=113 Identities=15% Similarity=0.165 Sum_probs=63.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQ-LELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~-~~~p~IlVlNK~Dl 193 (284)
.++.++||||+.+.. .+.... ....+++++++|+....+... +..++..+..... .+.|+++|+||+|+
T Consensus 69 ~~~~l~Dt~G~~~~~-------~~~~~~--~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 69 CLLDILDTAGQEEYS-------AMRDQY--MRTGEGFLCVFAINNSKSFAD-INLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp EEEEEEECCC--------------------CTTCSEEEEEEETTCHHHHHH-HHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEEEEECCChHHHH-------HHHHHh--hCcCCEEEEEEECcCHHHHHH-HHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 468999999975421 111111 122467888999863321111 2333333322222 47899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
..+.....+. .++.+.++ ..++++||+++.|++++++.|.+.+.
T Consensus 139 ~~~~~~~~~~---------------------------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 139 PTRTVDTKQA---------------------------HELAKSYG-IPFIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp SCCCSCHHHH---------------------------HHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcccCCHHHH---------------------------HHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 6522000000 11223334 37999999999999999999887654
No 71
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.32 E-value=1.7e-11 Score=101.38 Aligned_cols=110 Identities=12% Similarity=0.190 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlNK 190 (284)
.++.++||||+.+.. .+.. .+.. .+++++++|+.. +..+ +..++..+..... .+.|+++|+||
T Consensus 66 ~~~~l~Dt~G~~~~~-------~~~~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 132 (187)
T 2a9k_A 66 VQIDILDTAGQEDYA-------AIRDNYFRS---GEGFLCVFSITE---MESFAATADFREQILRVKEDENVPFLLVGNK 132 (187)
T ss_dssp EEEEEEECCCTTCCH-------HHHHHHHHH---CSEEEEEEETTC---HHHHHHHHHHHHHHHHHHCCTTCCEEEEEEC
T ss_pred EEEEEEECCCCcccH-------HHHHHHhcc---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 368899999976421 1222 2333 357888999863 3332 3333333323222 37899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+.... ..... .+.++...++ ..++++||+++.|++++++.|.+.+
T Consensus 133 ~Dl~~~~-~~~~~-------------------------~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 133 SDLEDKR-QVSVE-------------------------EAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp GGGGGGC-CSCHH-------------------------HHHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccC-ccCHH-------------------------HHHHHHHHcC-CeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 9986532 11000 0012223344 4899999999999999999988765
No 72
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=2.8e-11 Score=101.60 Aligned_cols=112 Identities=7% Similarity=0.126 Sum_probs=67.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh--cCCCEEEEec
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ--LELPHVNILS 189 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~--~~~p~IlVlN 189 (284)
..+.++||||+.... .+.. .+.. .+++++++|+.. +..+ +..++..+..... .+.|+++|+|
T Consensus 56 ~~~~l~Dt~G~~~~~-------~~~~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~piilv~n 122 (199)
T 2gf0_A 56 CTLQITDTTGSHQFP-------AMQRLSISK---GHAFILVFSVTS---KQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122 (199)
T ss_dssp EEEEEEECCGGGSCH-------HHHHHHHHH---CSEEEEEEETTC---HHHHHTTHHHHHHHHHHHSCGGGSCEEEEEE
T ss_pred EEEEEEeCCChHHhH-------HHHHHhhcc---CCEEEEEEECcC---HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 367999999975421 1222 2333 357888999863 3222 2222222222221 3689999999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+|+..+....... .++...++ ..++++||++|.|++++++.|.+.+..-
T Consensus 123 K~Dl~~~~~~~~~~---------------------------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 123 KCDETQREVDTREA---------------------------QAVAQEWK-CAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp CTTCSSCSSCHHHH---------------------------HHHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred CccCCccccCHHHH---------------------------HHHHHHhC-CeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 99986522000000 01112233 4799999999999999999999987653
No 73
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.32 E-value=2.1e-11 Score=101.73 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHH--HHHHHHHHHHHHH--HhcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVT--KFISGCMASLSAM--VQLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~--~~i~~~l~~l~~~--~~~~~p~IlVlNK 190 (284)
.++.++||||+.... . +.+.. ....+++++++|+....... ..+..+...+... ...+.|+++|.||
T Consensus 74 ~~~~i~Dt~G~~~~~---~----~~~~~--~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK 144 (198)
T 3t1o_A 74 TRFHLYTVPGQVFYN---A----SRKLI--LRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNK 144 (198)
T ss_dssp EEEEEEECCSCCSCS---H----HHHHH--TTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEEC
T ss_pred eEEEEEeCCChHHHH---H----HHHHH--HhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEc
Confidence 468999999976421 1 21211 12246899999996321111 1111111111111 1147899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+.... ...+ +.+....++...++++||++|.|++++++.|.+.+
T Consensus 145 ~Dl~~~~-~~~~---------------------------~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 145 RDLPDAL-PVEM---------------------------VRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp TTSTTCC-CHHH---------------------------HHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred hhccccc-CHHH---------------------------HHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 9986431 1111 12233455656899999999999999999887754
No 74
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.32 E-value=2.2e-11 Score=98.92 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=67.1
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH-HHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~-~~~~~~p~IlVlNK~D 192 (284)
+..+.++||||+... ..+.... ....+++++++|+....+... +..++..+.. ....+.|+++|.||+|
T Consensus 43 ~~~~~i~Dt~G~~~~-------~~~~~~~--~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 43 NISFTVWDVGGQDKI-------RPLWRHY--FQNTQGLIFVVDSNDRERVNE-AREELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp SCEEEEEECCCCGGG-------HHHHHHH--TTTCSEEEEEEETTCGGGHHH-HHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEEcCCChhh-------HHHHHHH--hccCCEEEEEEECCCHHHHHH-HHHHHHHHHhchhhcCCeEEEEEECcC
Confidence 457899999998541 1122222 122468899999864422222 2222221111 1123789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.... ...++. +.+.. ..... ....++++||++|.|++++++.|.+.+.
T Consensus 113 l~~~~-~~~~~~--------~~~~~--------------~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 113 LPNAM-NAAEIT--------DKLGL--------------HSLRH-RNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp STTCC-CHHHHH--------HHTTG--------------GGCSS-CCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CcCCC-CHHHHH--------HHhCc--------------ccccC-ccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 96532 111111 00000 00011 1246999999999999999999988764
No 75
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.32 E-value=2e-11 Score=101.88 Aligned_cols=108 Identities=11% Similarity=0.253 Sum_probs=64.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+.+.. ... ...+.. .+++++++|+.. +..+ +..++..+. ...+.|+++|+||+|
T Consensus 93 ~~~~i~Dt~G~~~~~---~~~---~~~~~~---~d~~i~v~D~~~---~~s~~~~~~~~~~i~--~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYA---SIV---PLYYRG---ATCAIVVFDISN---SNTLDRAKTWVNQLK--ISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCT---TTH---HHHHTT---CSEEEEEEETTC---HHHHHHHHHHHHHHH--HHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHH---HHH---HHHhcC---CCEEEEEEECCC---HHHHHHHHHHHHHHH--hhCCCcEEEEEECCC
Confidence 578999999965422 111 122323 468999999863 3332 222322221 224589999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.... ... . + .+.++....+ ..++++||++|.|++++++.|.+.+
T Consensus 159 -~~~~-~~~--~----~-------------------~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 159 -KNKF-QVD--I----L-------------------EVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp -CC-C-CSC--H----H-------------------HHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -cccc-cCC--H----H-------------------HHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 3321 110 0 0 0012223344 4899999999999999999987654
No 76
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.32 E-value=1.3e-11 Score=102.27 Aligned_cols=130 Identities=11% Similarity=0.079 Sum_probs=72.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+.++||||+...... ... .....+++++++|+....+.......++..+.... .+.|+++|+||+|+.
T Consensus 53 ~~~~i~Dt~G~~~~~~~-------~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~ 122 (186)
T 1mh1_A 53 VNLGLWDTAGQEDYDRL-------RPL--SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLR 122 (186)
T ss_dssp EEEEEECCCCSGGGTTT-------GGG--GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHH
T ss_pred EEEEEEECCCCHhHHHH-------HHH--hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEccccc
Confidence 35779999998652211 011 12234689999998632211111112222222211 278999999999997
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
... ...+.+. +.....- . .....++...++...++++||++|.|++++++.|.+.+.+.+
T Consensus 123 ~~~-~~~~~~~--------~~~~~~v-~----~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 123 DDK-DTIEKLK--------EKKLTPI-T----YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp TCH-HHHHHHH--------HTTCCCC-C----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred ccc-hhhhhhc--------ccccccC-C----HHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 643 2211110 0000000 0 001122334456668999999999999999999999887654
No 77
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.31 E-value=1.9e-11 Score=112.84 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=40.9
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
.+-++|.|.|.| |||||++.|||..|++.|+||++||+|||++.+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~ 91 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDST 91 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCccc
Confidence 456778899999 999999999999999999999999999999854
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.31 E-value=2e-11 Score=103.27 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=67.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh----cCCCEEEEe
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ----LELPHVNIL 188 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~----~~~p~IlVl 188 (284)
..+.++||||+........ ..+ ...+++++++|+.. +..+ +..++..+..... .+.|+++|+
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~------~~~---~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~ 124 (207)
T 1vg8_A 57 VTMQIWDTAGQERFQSLGV------AFY---RGADCCVLVFDVTA---PNTFKTLDSWRDEFLIQASPRDPENFPFVVLG 124 (207)
T ss_dssp EEEEEEEECSSGGGSCSCC------GGG---TTCSEEEEEEETTC---HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEE
T ss_pred EEEEEEeCCCcHHHHHhHH------HHH---hCCcEEEEEEECCC---HHHHHHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 3689999999755321110 112 22468999999863 3222 2233332222221 468999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
||+|+.... ...+.. .++........++++||++|.|++++++.|.+.+..
T Consensus 125 nK~Dl~~~~-~~~~~~--------------------------~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 125 NKIDLENRQ-VATKRA--------------------------QAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp ECTTSSCCC-SCHHHH--------------------------HHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ECCCCcccc-cCHHHH--------------------------HHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999986322 111000 111122334689999999999999999999877654
No 79
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.31 E-value=8.7e-12 Score=104.57 Aligned_cols=113 Identities=13% Similarity=0.272 Sum_probs=65.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK 190 (284)
.++.++||||+.... ..+... +.. .+++++++|+.. +..+ +..++..+.... ..+.|+++|+||
T Consensus 69 ~~~~l~Dt~G~~~~~------~~~~~~~~~~---~d~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 136 (189)
T 1z06_A 69 IKIQLWDTAGQERFR------KSMVQHYYRN---VHAVVFVYDMTN---MASFHSLPAWIEECKQHLLANDIPRILVGNK 136 (189)
T ss_dssp EEEEEEECCCSHHHH------TTTHHHHHTT---CCEEEEEEETTC---HHHHHTHHHHHHHHHHHCCCSCCCEEEEEEC
T ss_pred EEEEEEECCCchhhh------hhhhHHHhcC---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 368999999965411 012222 322 468999999863 3332 333333333322 357899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCc---ccHHHHHHHHHHhcCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKE---SSIRYVLSQIDNCIQW 266 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~---~~l~~Ll~~I~~~l~~ 266 (284)
+|+.... ++..-. ..++...++ ..++++||+++ +|+++++..|.+.+++
T Consensus 137 ~Dl~~~~-~v~~~~-------------------------~~~~~~~~~-~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 137 CDLRSAI-QVPTDL-------------------------AQKFADTHS-MPLFETSAKNPNDNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp TTCGGGC-CSCHHH-------------------------HHHHHHHTT-CCEEECCSSSGGGGSCHHHHHHHHC-----
T ss_pred ccccccc-eeCHHH-------------------------HHHHHHHcC-CEEEEEeCCcCCcccCHHHHHHHHHHHHhh
Confidence 9986532 111000 011112333 48999999999 9999999998877654
No 80
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.31 E-value=5.9e-12 Score=102.88 Aligned_cols=111 Identities=17% Similarity=0.130 Sum_probs=63.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK 190 (284)
.++.++||||+..... .+... +.. .+++++++|+.. +..+ +..++..+.... ..+.|+++|.||
T Consensus 51 ~~~~i~D~~g~~~~~~------~~~~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 118 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGG------WLQDHCLQT---GDAFLIVFSVTD---RRSFSKVPETLLRLRAGRPHHDLPVILVGNK 118 (169)
T ss_dssp EEEEEECCCCC--------------CHHHHH---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEECCCccccch------hhhhhhhcc---CCEEEEEEECCC---hHHHHHHHHHHHHHHhcccCCCCCEEEEeeC
Confidence 4678999999865211 01111 223 357888999863 3332 223332222211 137899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+.... ....-. ..++...++ ..++++||++|.|++++++.+.+.+
T Consensus 119 ~Dl~~~~-~~~~~~-------------------------~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 119 SDLARSR-EVSLEE-------------------------GRHLAGTLS-CKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp TTCGGGC-CSCHHH-------------------------HHHHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cchhhcc-cCCHHH-------------------------HHHHHHHcC-CcEEEecCccCCCHHHHHHHHHHHH
Confidence 9986433 111000 011223334 4899999999999999999988764
No 81
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.31 E-value=1.1e-11 Score=102.64 Aligned_cols=117 Identities=15% Similarity=0.017 Sum_probs=64.4
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+....... . ......+++++++|+....+... +..++..+... ...+.|+++|+||+|+
T Consensus 62 ~~~~i~Dt~G~~~~~~~~-------~--~~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYW-------R--CYYADTAAVIFVVDSTDKDRMST-ASKELHLMLQEEELQDAALLVFANKQDQ 131 (183)
T ss_dssp EEEEEEEEC----CCTTG-------G--GTTTTEEEEEEEEETTCTTTHHH-HHHHHHHHTTSSTTSSCEEEEEEECTTS
T ss_pred EEEEEEECCCCHhHHHHH-------H--HHhccCCEEEEEEECCCHHHHHH-HHHHHHHHHcChhhCCCeEEEEEECCCC
Confidence 467899999986522110 0 01123578999999875433332 22222211111 1357899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.... ...+.. +.+.. .. .......++++||++|+|++++++.|.+.++
T Consensus 132 ~~~~-~~~~i~--------~~~~~--------------~~-~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 132 PGAL-SASEVS--------KELNL--------------VE-LKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp TTCC-CHHHHH--------HHTTT--------------TT-CCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHH--------HHhCc--------------cc-ccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 6532 111111 00000 00 0111247999999999999999999987653
No 82
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.31 E-value=2.8e-11 Score=101.66 Aligned_cols=118 Identities=12% Similarity=0.135 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK~ 191 (284)
..++.++||||+.+.. .+.. .+.. .+++++++|+....+... +..++..+... ...+.|+++|+||+
T Consensus 66 ~~~~~l~Dt~G~~~~~-------~~~~~~~~~---~d~ii~v~D~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~NK~ 134 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFR-------SMWERYCRG---VSAIVYMVDAADQEKIEA-SKNELHNLLDKPQLQGIPVLVLGNKR 134 (188)
T ss_dssp TEEEEEEEECCSHHHH-------TTHHHHHTT---CSEEEEEEETTCGGGHHH-HHHHHHHHHTCGGGTTCCEEEEEECT
T ss_pred CEEEEEEECCCCHhHH-------HHHHHHHcc---CCEEEEEEECCCHHHHHH-HHHHHHHHHhCcccCCCCEEEEEECC
Confidence 3468999999975421 1122 2322 468999999864432222 22222211111 12578999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
|+.... +..++. +.+.. .. .......++++||++|.|++++++.|.+.+..
T Consensus 135 Dl~~~~-~~~~~~--------~~~~~--------------~~-~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 135 DLPGAL-DEKELI--------EKMNL--------------SA-IQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TSTTCC-CHHHHH--------HHTTG--------------GG-CCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred CCccCC-CHHHHH--------HHhCh--------------hh-hccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 996532 111111 11110 00 01123578999999999999999999987754
No 83
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.31 E-value=2.1e-11 Score=101.69 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+...... .....+... +...+ .+++++++|+... .. ...+ +..+...+.|.++|.||+|+
T Consensus 54 ~~~~l~Dt~G~~~~~~~-~~~~~~~~~~~~~~~-~~~~i~v~d~~~~---~~-~~~~---~~~~~~~~~piilv~nK~Dl 124 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTAN-SIDEIIARDYIINEK-PDLVVNIVDATAL---ER-NLYL---TLQLMEMGANLLLALNKMDL 124 (188)
T ss_dssp EEEEEEECCCCSCCSSS-SHHHHHHHHHHHHHC-CSEEEEEEEGGGH---HH-HHHH---HHHHHTTTCCEEEEEECHHH
T ss_pred cEEEEEECCCcCccccc-cHHHHHHHHHHhccC-CCEEEEEecchhH---HH-HHHH---HHHHHhcCCCEEEEEEhhhc
Confidence 46789999998763221 112223222 22112 3578999998532 21 1111 22334468999999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
.... .+.... .++.+.++ ..++++||+++.|++++++.|.+.+....
T Consensus 125 ~~~~-~~~~~~--------------------------~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 125 AKSL-GIEIDV--------------------------DKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHT-TCCCCH--------------------------HHHHHHHT-SCEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred cccc-cchHHH--------------------------HHHHHHhC-CCeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 6432 221100 01112223 57999999999999999999999988765
No 84
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.31 E-value=1e-11 Score=113.60 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=89.0
Q ss_pred CceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC----CCCCcccccccc----ccHHHHhh-----hc
Q 023298 18 ALVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN----FDYPVAMDIREL----ISLEDVME-----EL 82 (284)
Q Consensus 18 ~~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~----~~~~~~~dir~~----i~~~~vm~-----~~ 82 (284)
++++++|+|+ | +||||++.|||..|++.|+||++||+||+... +..+....+.+. ..+++++. ++
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~~~~l~~~i~~~~~~~l 182 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGF 182 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTTSSCHHHHCEEETTTTE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcCCCCHHHhhhccCCCCE
Confidence 4577889987 5 99999999999999999999999999997542 222222222222 23444432 33
Q ss_pred CcccCchhhhh-hHhhh-hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC
Q 023298 83 GLGPNGGLIYC-MEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 160 (284)
Q Consensus 83 ~lgPng~l~~~-~e~~~-~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~ 160 (284)
.+.|.|..... .+++. ..+.+.+. .+++ ++++|||||||..... ... .+. ...+.+++++.....
T Consensus 183 ~vl~~g~~~~~~~ell~~~~l~~ll~-~l~~--~yD~VIIDtpp~~~~~-----d~~---~l~--~~ad~vilV~~~~~~ 249 (299)
T 3cio_A 183 DVITRGQVPPNPSELLMRDRMRQLLE-WAND--HYDLVIVDTPPMLAVS-----DAA---VVG--RSVGTSLLVARFGLN 249 (299)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHH-HHHH--HCSEEEEECCCTTTCT-----HHH---HHG--GGCSEEEEEEETTTS
T ss_pred EEEECCCCCCCHHHHhCHHHHHHHHH-HHHh--CCCEEEEcCCCCchhH-----HHH---HHH--HHCCEEEEEEcCCCC
Confidence 44454433221 22222 23322222 3332 6799999999976421 010 121 123567777766543
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEE-EEecCCccc
Q 023298 161 TDVTKFISGCMASLSAMVQLELPHV-NILSKMDLV 194 (284)
Q Consensus 161 ~~~~~~i~~~l~~l~~~~~~~~p~I-lVlNK~Dll 194 (284)
.. .. +. .++..+.+.+.+.+ +|+|++|.-
T Consensus 250 ~~-~~-~~---~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 250 TA-KE-VS---LSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CT-TH-HH---HHHHHHHHTTCCCCCEEEEECCCC
T ss_pred hH-HH-HH---HHHHHHHhCCCCeEEEEEeCCccC
Confidence 21 11 11 12233334555544 789999853
No 85
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.31 E-value=2.6e-11 Score=102.77 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=66.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..+.++||||+... .. .....+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 77 ~~l~i~Dt~G~~~~---~~---~~~~~~~~---~d~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 144 (199)
T 2p5s_A 77 TVLQLWDTAGQERF---RS---IAKSYFRK---ADGVLLLYDVTC---EKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144 (199)
T ss_dssp EEEEEEECTTCTTC---HH---HHHHHHHH---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHC---CCEEEEEECGG
T ss_pred EEEEEEECCCCcch---hh---hHHHHHhh---CCEEEEEEECCC---hHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 36789999997541 11 11223433 357899999863 3222 33333333333334789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.... .......-.. ... .++...++ ..++++||++|.|+++++..|.+.+.
T Consensus 145 l~~~~-~~~~~~~v~~----------------~~~---~~~~~~~~-~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 145 IRDTA-ATEGQKCVPG----------------HFG---EKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp GHHHH-HHTTCCCCCH----------------HHH---HHHHHHHT-CEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ccccc-ccccccccCH----------------HHH---HHHHHHcC-CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 86422 1111100000 000 11112233 48999999999999999999887654
No 86
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=99.31 E-value=9.7e-12 Score=113.30 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=89.4
Q ss_pred CceEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC----CCCcccccccc----ccHHHHh-----hhc
Q 023298 18 ALVIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF----DYPVAMDIREL----ISLEDVM-----EEL 82 (284)
Q Consensus 18 ~~~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~----~~~~~~dir~~----i~~~~vm-----~~~ 82 (284)
++++++|+|+ | +||||++.|||..|++.|+||++||+||+.... ..+....+.++ ..+++++ .++
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~l~~~~~~~~~i~~~~~~~l 170 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKF 170 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCTTCHHHHHHTSSCTTTTCEECSSTTE
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCCCCHHHHccCCCCHHHheeccCCCCE
Confidence 4567888887 5 999999999999999999999999999996532 22211112111 1122222 233
Q ss_pred CcccCchhhhh-hHhhh-hcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC
Q 023298 83 GLGPNGGLIYC-MEHLE-DNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 160 (284)
Q Consensus 83 ~lgPng~l~~~-~e~~~-~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~ 160 (284)
.+.|.|..... .+++. ..+.+.+. .+.+ ++++|||||||...... ........+.+++++.+...
T Consensus 171 ~vl~~g~~~~~~~ell~~~~l~~ll~-~l~~--~yD~VIIDtpp~~~~~d----------a~~l~~~aD~vllVv~~~~~ 237 (286)
T 3la6_A 171 DLIPRGQVPPNPSELLMSERFAELVN-WASK--NYDLVLIDTPPILAVTD----------AAIVGRHVGTTLMVARYAVN 237 (286)
T ss_dssp EEECCCSCCSCHHHHHTSHHHHHHHH-HHHH--HCSEEEEECCCTTTCTH----------HHHHTTTCSEEEEEEETTTS
T ss_pred EEEeCCCCCCCHHHHhchHHHHHHHH-HHHh--CCCEEEEcCCCCcchHH----------HHHHHHHCCeEEEEEeCCCC
Confidence 44455443221 23222 23322222 3332 67999999999764211 11112234667888876533
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCC-EEEEecCCccc
Q 023298 161 TDVTKFISGCMASLSAMVQLELP-HVNILSKMDLV 194 (284)
Q Consensus 161 ~~~~~~i~~~l~~l~~~~~~~~p-~IlVlNK~Dll 194 (284)
. ... + ..++..+.+.+.+ .-+|+||++.-
T Consensus 238 ~-~~~-~---~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 238 T-LKE-V---ETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp B-HHH-H---HHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred c-HHH-H---HHHHHHHHhCCCCEEEEEEcCcccc
Confidence 2 111 1 1223344455554 45889999863
No 87
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.30 E-value=4.1e-11 Score=106.11 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=33.7
Q ss_pred EEEEEC-CC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 21 IKCVFS-PP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 21 ~~~viG-~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
.+.|++ .| +||||++.+||.+|++.|++|++||+||+..
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~ 44 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMA 44 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 455554 56 9999999999999999999999999999754
No 88
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.30 E-value=3.2e-11 Score=100.25 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=67.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlNK~ 191 (284)
.++.++||||+... ..+.... ....+++++++|+.. +..+ +..++..+..... .+.|+++|+||+
T Consensus 70 ~~~~l~Dt~G~~~~-------~~~~~~~--~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 137 (195)
T 3bc1_A 70 IHLQLWDTAGLERF-------RSLTTAF--FRDAMGFLLLFDLTN---EQSFLNVRNWISQLQMHAYSENPDIVLCGNKS 137 (195)
T ss_dssp EEEEEEEECCSGGG-------HHHHHHT--TTTCSEEEEEEETTC---HHHHHTHHHHHHHHHHHSSSSSCCEEEEEECT
T ss_pred EEEEEEeCCCcHHH-------HHHHHHH--HcCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 46899999997431 1121211 122468999999863 3332 2233332222222 578999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+...+ .... +. +.++...++ ..++++||+++.|++++++.|.+.+.
T Consensus 138 Dl~~~~-~~~~------~~-------------------~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 138 DLEDQR-AVKE------EE-------------------ARELAEKYG-IPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp TCGGGC-CSCH------HH-------------------HHHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccc-ccCH------HH-------------------HHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 986532 1100 00 011112233 47999999999999999999887653
No 89
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.30 E-value=1.8e-11 Score=116.18 Aligned_cols=117 Identities=18% Similarity=0.264 Sum_probs=74.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCC-EEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p-~IlVlNK~D 192 (284)
+.++.++||||+... ...+...+.. .+++++++|+.....+... .+ +..+...+.| .++|+||+|
T Consensus 74 ~~~~~iiDtpG~~~f------~~~~~~~~~~---aD~~ilVvda~~g~~~qt~--~~---l~~~~~~~ip~iivviNK~D 139 (405)
T 2c78_A 74 KRHYSHVDCPGHADY------IKNMITGAAQ---MDGAILVVSAADGPMPQTR--EH---ILLARQVGVPYIVVFMNKVD 139 (405)
T ss_dssp SCEEEEEECCCSGGG------HHHHHHHHTT---CSSEEEEEETTTCCCHHHH--HH---HHHHHHTTCCCEEEEEECGG
T ss_pred CeEEEEEECCChHHH------HHHHHHHHHH---CCEEEEEEECCCCCcHHHH--HH---HHHHHHcCCCEEEEEEECcc
Confidence 468999999997641 2333444433 4678999999754333221 11 1223346889 789999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCccc----------------
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESS---------------- 252 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~---------------- 252 (284)
+..++..++.. ...+.+++..+++ ..++|+||++|.|
T Consensus 140 l~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~ 196 (405)
T 2c78_A 140 MVDDPELLDLV-----------------------EMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWV 196 (405)
T ss_dssp GCCCHHHHHHH-----------------------HHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHH
T ss_pred ccCcHHHHHHH-----------------------HHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCccc
Confidence 97533111111 1122334455554 6799999999988
Q ss_pred --HHHHHHHHHHhcCCC
Q 023298 253 --IRYVLSQIDNCIQWG 267 (284)
Q Consensus 253 --l~~Ll~~I~~~l~~g 267 (284)
+..|++.|.+.+|..
T Consensus 197 ~~i~~Ll~~l~~~lp~p 213 (405)
T 2c78_A 197 DKIWELLDAIDEYIPTP 213 (405)
T ss_dssp HHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHhhcCCC
Confidence 889999999988753
No 90
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=105.09 Aligned_cols=112 Identities=12% Similarity=0.138 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+...... . ...+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 74 ~~l~l~Dt~G~~~~~~~---~---~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 141 (200)
T 2o52_A 74 VKLQIWDTAGQERFRSV---T---RSYYRG---AAGALLVYDITS---RETYNSLAAWLTDARTLASPNIVVILCGNKKD 141 (200)
T ss_dssp EEEEEECCTTHHHHSCC---C---HHHHTT---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHTCTTCEEEEEEECGG
T ss_pred eEEEEEcCCCcHhHHHH---H---HHHhcc---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCC
Confidence 46899999996542110 0 112322 467899999863 3332 33343333333335789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.... .+.. . . ..++....+ ..++++||++|.|+++++..|.+.+.
T Consensus 142 l~~~~-~v~~-~-----~-------------------~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 142 LDPER-EVTF-L-----E-------------------ASRFAQENE-LMFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp GGGGC-CSCH-H-----H-------------------HHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ccccc-ccCH-H-----H-------------------HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 86432 1110 0 0 011112233 58999999999999999998877653
No 91
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.30 E-value=2.4e-11 Score=103.28 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=67.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+...... . ...+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 69 ~~~~l~Dt~G~~~~~~~---~---~~~~~~---~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 136 (213)
T 3cph_A 69 VKLQLWDTAGQERFRTI---T---TAYYRG---AMGIILVYDVTD---ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD 136 (213)
T ss_dssp EEEEEECCTTGGGGTCC---C---HHHHTT---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHTTTCSEEEEEEECTT
T ss_pred EEEEEEeCCCcHHHHHH---H---HHHhcc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 46899999997542211 1 112322 468899999863 3222 23333333333334789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+.... ...+.. .++...++ ..++++||++|.|+++++..|.+.+.+
T Consensus 137 l~~~~-~~~~~~--------------------------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 137 METRV-VTADQG--------------------------EALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp CSSCC-SCHHHH--------------------------HHHHHHHT-CCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred Ccccc-cCHHHH--------------------------HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 84322 100000 11112233 479999999999999999998877654
No 92
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.30 E-value=2.3e-11 Score=102.22 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+..... .. ...+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 70 ~~~~i~Dt~G~~~~~~---~~---~~~~~~---~d~ii~v~d~~~---~~s~~~~~~~l~~i~~~~~~~~piilv~nK~D 137 (191)
T 2a5j_A 70 IKLQIWDTAGQESFRS---IT---RSYYRG---AAGALLVYDITR---RETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 137 (191)
T ss_dssp EEEEEECCTTGGGTSC---CC---HHHHTT---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEECCCchhhhh---hH---HHHhcc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 3679999999754221 11 112322 467899999863 3332 33343333332234789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+...+ .+... . ..++...++ ..++++||+++.|++++++.|.+.+
T Consensus 138 l~~~~-~v~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 138 LESRR-DVKRE------E-------------------GEAFAREHG-LIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp CGGGC-CSCHH------H-------------------HHHHHHHHT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cCCcc-ccCHH------H-------------------HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 86532 21100 0 011112233 4899999999999999999887654
No 93
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.29 E-value=3.7e-12 Score=106.68 Aligned_cols=119 Identities=10% Similarity=-0.011 Sum_probs=68.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH-HHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~-~~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+........ ......+++++++|+....+.... ..++..+.. ....+.|+++|+||+|
T Consensus 65 ~~~~~~~Dt~G~~~~~~~~~---------~~~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~D 134 (189)
T 2x77_A 65 NISFEVWDLGGQTGVRPYWR---------CYFSDTDAVIYVVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQD 134 (189)
T ss_dssp TEEEEEEEECCSSSSCCCCS---------SSSTTCCEEEEEEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhHHHHHH---------HHhhcCCEEEEEEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCC
Confidence 34789999999864221100 011234789999999755433322 122211111 0113789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+.... ...++. +.+.. ...... ...++++||++++|++++++.|.+.+++
T Consensus 135 l~~~~-~~~~~~--------~~~~~--------------~~~~~~-~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 135 LPDAA-SEAEIA--------EQLGV--------------SSIMNR-TWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp STTCC-CHHHHH--------HHTTG--------------GGCCSS-CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CcCCC-CHHHHH--------HHhCh--------------hhccCC-ceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 97542 111111 00000 000111 2479999999999999999999887643
No 94
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.29 E-value=6.5e-11 Score=97.42 Aligned_cols=114 Identities=14% Similarity=0.180 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.++||||+........ ......+++++++|+.....+..+ ..+......+.|+++|+||+|+.
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~---------~~~~~~d~~i~v~d~~~~~~~~~~-----~~l~~~~~~~~p~ilv~nK~Dl~ 120 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRA---------RGAQVTDIVILVVAADDGVMPQTV-----EAINHAKAANVPIIVAINKMDKP 120 (178)
T ss_dssp EEEEESCCCSSSSSSCSCC---------SSCCCCCEEEEEEETTCCCCHHHH-----HHHHHHGGGSCCEEEEEETTTSS
T ss_pred ceEEEEECCCCHHHHHHHH---------HHHhhCCEEEEEEECCCCCcHHHH-----HHHHHHHhCCCCEEEEEECccCC
Confidence 4678999999765322110 112335689999998654334332 11223345689999999999997
Q ss_pred cch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 195 TNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 195 ~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
... .++...++ +.. .+...++ ...++++||++|.|++++++.|.+.+.
T Consensus 121 ~~~~~~~~~~~~--------~~~---------------~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 121 EANPDRVMQELM--------EYN---------------LVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp CSCHHHHHHHHT--------TTT---------------CCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH--------hcC---------------cChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 531 01111110 000 0001122 258999999999999999999887654
No 95
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.29 E-value=1.2e-11 Score=106.11 Aligned_cols=120 Identities=14% Similarity=0.168 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+.++||||+...... .. ..+.. .+++++++|+....+... +..++..+......+.|+++|+||+|+.
T Consensus 61 ~~~~l~Dt~G~~~~~~~---~~---~~~~~---~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVL---KD---VYYIG---ASGAILFFDVTSRITCQN-LARWVKEFQAVVGNEAPIVVCANKIDIK 130 (218)
T ss_dssp EEEEEEEECSGGGTSCC---CH---HHHTT---CSEEEEEEETTCHHHHHT-HHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred EEEEEEecCCchhhchH---HH---HHhhc---CCEEEEEEeCCCHHHHHH-HHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 35899999997542211 11 11222 467899999864321111 3344444444445578999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDAD 271 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~ 271 (284)
... ++.... ..+..... ...++++||++|.|++++++.|.+.+.......
T Consensus 131 ~~~-~~~~~~-------------------------~~~~~~~~-~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 131 NRQ-KISKKL-------------------------VMEVLKGK-NYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180 (218)
T ss_dssp -----CCHHH-------------------------HHHHTTTC-CCEEEEEBTTTTBTTTHHHHHHHHHHHCCTTCC
T ss_pred ccc-ccCHHH-------------------------HHHHHHHc-CCcEEEEecCCCCCHHHHHHHHHHHHhcccccc
Confidence 543 211100 01111222 367999999999999999999999887765544
No 96
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.29 E-value=3.1e-11 Score=101.16 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+...... . ...+ ...+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 71 ~~~~l~Dt~G~~~~~~~---~---~~~~---~~~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 138 (189)
T 2gf9_A 71 IKLQIWDTAGQERYRTI---T---TAYY---RGAMGFLLMYDIAN---QESFAAVQDWATQIKTYSWDNAQVILVGNKCD 138 (189)
T ss_dssp EEEEEEECCSCCSSCCS---G---GGGG---TTCSEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCCcHHHhhh---H---HHhc---cCCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 46899999997542111 0 0112 22468899999863 3332 33333332222224789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+...+ ....- .+.++.+.++ ..++++||++|.|++++++.|.+.+.
T Consensus 139 l~~~~-~~~~~-------------------------~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 139 LEDER-VVPAE-------------------------DGRRLADDLG-FEFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp CGGGC-CSCHH-------------------------HHHHHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccc-CCCHH-------------------------HHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 86532 11100 0011112333 48999999999999999999987664
No 97
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.29 E-value=2.2e-11 Score=103.47 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..+.++||||+........ ..+ ...+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~~~~------~~~---~~~d~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 124 (206)
T 2bcg_Y 57 VKLQIWDTAGQERFRTITS------SYY---RGSHGIIIVYDVTD---QESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124 (206)
T ss_dssp EEEEEECCTTTTTTTCCCG------GGG---TTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTT
T ss_pred EEEEEEeCCChHHHHHHHH------Hhc---cCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 3689999999764221100 112 22468999999863 3332 33343333333334689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+...+ .+..- . ..++...++ ..++++||++|.|+++++..|.+.+..
T Consensus 125 l~~~~-~~~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 125 LKDKR-VVEYD------V-------------------AKEFADANK-MPFLETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp CTTTC-CSCHH------H-------------------HHHHHHHTT-CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred Ccccc-ccCHH------H-------------------HHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 96533 11100 0 011112333 579999999999999999988876543
No 98
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.29 E-value=4.1e-11 Score=101.15 Aligned_cols=111 Identities=12% Similarity=0.193 Sum_probs=67.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK 190 (284)
.++.++||||+.+.. . +.. .+.. .+++++++|+.. +..+ +..++..+.... ..+.|+++|+||
T Consensus 62 ~~~~l~Dt~G~~~~~---~----~~~~~~~~---~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 128 (206)
T 2bov_A 62 VQIDILDTAGQEDYA---A----IRDNYFRS---GEGFLCVFSITE---MESFAATADFREQILRVKEDENVPFLLVGNK 128 (206)
T ss_dssp EEEEEEECCCTTCCH---H----HHHHHHHH---CSEEEEEEETTC---HHHHHHHHHHHHHHHHHTTCSCCCEEEEEEC
T ss_pred EEEEEEcCCChhhhH---H----HHHHHHhh---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEec
Confidence 368899999975421 1 222 2333 357888999863 3332 223333222222 237899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|+.... ++.. +. +.++...++ ..++++||++|.|++++++.|.+.+.
T Consensus 129 ~Dl~~~~-~~~~------~~-------------------~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 129 SDLEDKR-QVSV------EE-------------------AKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTCGGGC-CSCH------HH-------------------HHHHHHHHT-CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cCccccc-cccH------HH-------------------HHHHHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9986533 1100 00 011122334 47999999999999999998887654
No 99
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.28 E-value=3.2e-11 Score=102.74 Aligned_cols=112 Identities=14% Similarity=0.220 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
.++.++||||+... ..+.. .+.. .+++++++|+.. +..+ +..++..+......+.|+++|.||+
T Consensus 78 ~~l~i~Dt~G~~~~-------~~~~~~~~~~---~d~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~NK~ 144 (201)
T 2hup_A 78 VKLQIWDTAGQERF-------RTITQSYYRS---ANGAILAYDITK---RSSFLSVPHWIEDVRKYAGSNIVQLLIGNKS 144 (201)
T ss_dssp EEEEEECCTTCGGG-------HHHHHHHHTT---CSEEEEEEETTB---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECT
T ss_pred EEEEEEECCCcHhH-------HHHHHHHHhh---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 47899999997541 11222 2322 467899999863 3332 2333333322223568999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+...+ .+.. + .+.++....+...++++||++|+|++++++.|.+.+.
T Consensus 145 Dl~~~~-~v~~------~-------------------~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 145 DLSELR-EVSL------A-------------------EAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp TCGGGC-CSCH------H-------------------HHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cccccc-ccCH------H-------------------HHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 986432 1100 0 0112223455558999999999999999999887664
No 100
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=3.3e-11 Score=103.28 Aligned_cols=112 Identities=11% Similarity=0.190 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+... ..+... .....+++++++|+.. +..+ +..++..+......+.|+++|.||+|
T Consensus 75 ~~l~l~Dt~G~~~~-------~~~~~~--~~~~~d~~i~v~D~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~NK~D 142 (201)
T 2ew1_A 75 VKLQIWDTAGQERF-------RSITQS--YYRSANALILTYDITC---EESFRCLPEWLREIEQYASNKVITVLVGNKID 142 (201)
T ss_dssp EEEEEEEECCSGGG-------HHHHGG--GSTTCSEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEECCCcHHH-------HHHHHH--HHhcCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence 36899999997431 111111 1223468999999863 3333 33444433333345789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.... ++.... . .++....+ ..++++||++|+|+++++..|.+.+.
T Consensus 143 l~~~~-~v~~~~------------------~-------~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 143 LAERR-EVSQQR------------------A-------EEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp GGGGC-SSCHHH------------------H-------HHHHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred Ccccc-ccCHHH------------------H-------HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 86432 211000 0 01111222 57999999999999999998877654
No 101
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.28 E-value=2.5e-11 Score=102.99 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=67.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHH-HhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM-VQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~-~~~~~p~IlVlNK 190 (284)
...+.++||||+.+...... ..+ ...+++++++|+.. +..+ +..++..+... ...+.|+++|+||
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~------~~~---~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 138 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPY------SFI---IGVHGYVLVYSVTS---LHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCG------GGT---TTCCEEEEEEETTC---HHHHHHHHHHHHHHHC-----CCCEEEEEEC
T ss_pred EEEEEEEECCCccchHHHHH------HHH---hcCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEC
Confidence 34678999999765321100 012 22468899999863 3332 23333222211 1237899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+|+.... .+.... . .++...++ ..++++||++|.|++++++.|.+.+..-
T Consensus 139 ~Dl~~~~-~v~~~~------------------~-------~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 139 ADLSPER-EVQAVE------------------G-------KKLAESWG-ATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp TTCGGGC-CSCHHH------------------H-------HHHHHHHT-CEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCcccc-ccCHHH------------------H-------HHHHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 9986533 221100 0 11112233 4899999999999999999998876543
No 102
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.28 E-value=1.9e-11 Score=101.61 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=68.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+.... .+... .....+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 59 ~~~~l~Dt~G~~~~~-------~~~~~--~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piilv~nK~D 126 (186)
T 2bme_A 59 VKLQIWDTAGQERFR-------SVTRS--YYRGAAGALLVYDITS---RETYNALTNWLTDARMLASQNIVIILCGNKKD 126 (186)
T ss_dssp EEEEEEEECCSGGGH-------HHHHT--TSTTCSEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHHH-------HHHHH--HHhcCCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 367899999965411 11111 1223568999999864 3332 33444433333345789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.... .... . . ..++....+ ..++++||++|+|++++++.|.+.+.
T Consensus 127 l~~~~-~~~~-~-----~-------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 127 LDADR-EVTF-L-----E-------------------ASRFAQENE-LMFLETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp GGGGC-CSCH-H-----H-------------------HHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccc-ccCH-H-----H-------------------HHHHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 86432 1110 0 0 011112233 58999999999999999998877654
No 103
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=103.60 Aligned_cols=111 Identities=11% Similarity=0.143 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+... ..... ..+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 74 ~~~~i~Dt~G~~~~---~~~~~---~~~~~---~d~vi~v~D~~~---~~s~~~~~~~l~~i~~~~~~~~piilv~nK~D 141 (193)
T 2oil_A 74 VKAQIWDTAGLERY---RAITS---AYYRG---AVGALLVFDLTK---HQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141 (193)
T ss_dssp EEEEEEEESCCCTT---CTTHH---HHHTT---CCEEEEEEETTC---HHHHHTHHHHHHHHHTTSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCchhh---hhhhH---HHhcc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEECCC
Confidence 46799999997542 12111 12322 467899999863 3332 23333322222234789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+...+ ....- . ..++....+ ..++++||++|.|++++++.|.+.+
T Consensus 142 l~~~~-~~~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 142 LSQAR-EVPTE------E-------------------ARMFAENNG-LLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp GGGGC-CSCHH------H-------------------HHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccccc-ccCHH------H-------------------HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 96532 11000 0 011112333 5899999999999999999887654
No 104
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.28 E-value=2e-11 Score=101.95 Aligned_cols=117 Identities=9% Similarity=0.146 Sum_probs=70.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK~ 191 (284)
.++.++||||+.... ... ...+.. .+++++++|+.. +..+ +..++..+.... ..+.|+++|+||+
T Consensus 64 ~~~~i~Dt~G~~~~~---~~~---~~~~~~---~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~ 131 (195)
T 1x3s_A 64 AKLAIWDTAGQERFR---TLT---PSYYRG---AQGVILVYDVTR---RDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 131 (195)
T ss_dssp EEEEEEEECSSGGGC---CSH---HHHHTT---CCEEEEEEETTC---HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECT
T ss_pred EEEEEEeCCCchhhh---hhh---HHHhcc---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECC
Confidence 468999999976422 111 122323 468999999863 3332 223332222111 1468999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDAD 271 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~ 271 (284)
|+.... +... . ..++...++ ..++++||+++.|++++++.|.+.+...+...
T Consensus 132 Dl~~~~--~~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 183 (195)
T 1x3s_A 132 DKENRE--VDRN------E-------------------GLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 183 (195)
T ss_dssp TSSSCC--SCHH------H-------------------HHHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHTSGGGT
T ss_pred cCcccc--cCHH------H-------------------HHHHHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence 984322 1000 0 011112333 57999999999999999999999887665443
No 105
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.27 E-value=4.6e-11 Score=109.46 Aligned_cols=42 Identities=10% Similarity=0.017 Sum_probs=39.2
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
+.+++++|++ |||||++.+||.+++..|++|+++|.|++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~ 140 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPA 140 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHH
Confidence 6778899999 99999999999999999999999999998763
No 106
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.27 E-value=2.4e-11 Score=105.14 Aligned_cols=127 Identities=11% Similarity=0.028 Sum_probs=75.0
Q ss_pred EEEE-CCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHhhhh
Q 023298 22 KCVF-SPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEHLED 99 (284)
Q Consensus 22 ~~vi-G~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~~~~ 99 (284)
+.|+ +.| +||||++.+||.+|++.| +|++||+|||++...|-. ..+ + |. .++.+ .
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~---~~~------------l-~~-~vi~~-----~ 59 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGK---RGS------------L-PF-KVVDE-----R 59 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHH---HSC------------C-SS-EEEEG-----G
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhc---CCC------------C-Cc-ceeCH-----H
Confidence 4444 557 999999999999999999 999999999986543310 000 1 11 11110 0
Q ss_pred cHHHHHHHHhhccCCCCEEEEeCCCC-cccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH
Q 023298 100 NLDDWLAEELDNYLDDDYLVFDCPGQ-IELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV 178 (284)
Q Consensus 100 ~~~~~l~~~l~~~~~~~~viiDtPg~-~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~ 178 (284)
. +. .+.+ +++||+|||||. .... ....+..+ +.++..+.+. +.. +......+..+.
T Consensus 60 ~----l~-~l~~--~yD~viiD~p~~~~~~~--------~~~~l~~a---D~viiv~~~~----~~~-~~~~~~~~~~l~ 116 (209)
T 3cwq_A 60 Q----AA-KYAP--KYQNIVIDTQARPEDED--------LEALADGC---DLLVIPSTPD----ALA-LDALMLTIETLQ 116 (209)
T ss_dssp G----HH-HHGG--GCSEEEEEEECCCSSSH--------HHHHHHTS---SEEEEEECSS----HHH-HHHHHHHHHHHH
T ss_pred H----HH-Hhhh--cCCEEEEeCCCCcCcHH--------HHHHHHHC---CEEEEEecCC----chh-HHHHHHHHHHHH
Confidence 1 22 2332 679999999997 4311 12234343 4566666652 222 222222233333
Q ss_pred hc-CCCEEEEecCCccc
Q 023298 179 QL-ELPHVNILSKMDLV 194 (284)
Q Consensus 179 ~~-~~p~IlVlNK~Dll 194 (284)
+. +.+..+|+|+++..
T Consensus 117 ~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 117 KLGNNRFRILLTIIPPY 133 (209)
T ss_dssp HTCSSSEEEEECSBCCT
T ss_pred hccCCCEEEEEEecCCc
Confidence 32 67889999999864
No 107
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.27 E-value=1e-10 Score=110.96 Aligned_cols=115 Identities=12% Similarity=0.145 Sum_probs=73.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcC-CCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLE-LPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~-~p~IlVlNK~D 192 (284)
..+.++||||+.. ....+...+.. .+++++++|+.... .+... ..+. .+...+ +|.|+|+||+|
T Consensus 75 ~~~~iiDtPGh~~------~~~~~~~~~~~---~D~~ilVvda~~~~~~~qt~--~~~~---~~~~~~~~~iivviNK~D 140 (403)
T 3sjy_A 75 RRISFIDAPGHEV------LMATMLSGAAL---MDGAILVVAANEPFPQPQTR--EHFV---ALGIIGVKNLIIVQNKVD 140 (403)
T ss_dssp EEEEEEECCCCGG------GHHHHHHHHTT---CSEEEEEEETTSCSSCHHHH--HHHH---HHHHHTCCCEEEEEECGG
T ss_pred ceEEEEECCCcHH------HHHHHHHHHhh---CCEEEEEEECCCCCCcHHHH--HHHH---HHHHcCCCCEEEEEECcc
Confidence 5789999999533 23334444433 46899999998643 33322 1111 112233 58999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC--CceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~--~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+...+ +.....+ .+.+.+..+. ...++|+||++|+|++.|++.|.+.++.-
T Consensus 141 l~~~~-~~~~~~~-----------------------~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 141 VVSKE-EALSQYR-----------------------QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp GSCHH-HHHHHHH-----------------------HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ccchH-HHHHHHH-----------------------HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 97644 3322211 1223333333 35799999999999999999999987653
No 108
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.27 E-value=4.8e-11 Score=99.02 Aligned_cols=110 Identities=12% Similarity=0.195 Sum_probs=66.9
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHH-HhcCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM-VQLELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~-~~~~~p~IlVlNK~D 192 (284)
.+.++||||+.+.. .... ..+.. .+++++++|+.. +..+ +..++..+... ...+.|+++|.||+|
T Consensus 67 ~l~i~Dt~G~~~~~---~~~~---~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 134 (183)
T 3kkq_A 67 ILDVLDTAGQEEFS---AMRE---QYMRT---GDGFLIVYSVTD---KASFEHVDRFHQLILRVKDRESFPMILVANKVD 134 (183)
T ss_dssp EEEEEECCSCGGGC---SSHH---HHHHH---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTT
T ss_pred EEEEEECCCchhhH---HHHH---HHHhc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCC
Confidence 35679999976522 2122 12333 357889999863 3333 33333333222 235789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEecc-CcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~-~~~~l~~Ll~~I~~~l 264 (284)
+...+ ....- .+.++...++ ..++++||+ ++.|++++++.|.+.+
T Consensus 135 l~~~~-~v~~~-------------------------~~~~~~~~~~-~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 135 LMHLR-KVTRD-------------------------QGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CSTTC-CSCHH-------------------------HHHHHHHHHT-CCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred chhcc-CcCHH-------------------------HHHHHHHHhC-CeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 86532 11100 0011223334 679999999 9999999999998765
No 109
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.27 E-value=5.6e-11 Score=112.67 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCC-EEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELP-HVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p-~IlVlNK~D 192 (284)
+.++.|+||||+.. | ...+ .......+++++++|+.....+...- . +..+...+.| .|+|+||+|
T Consensus 65 ~~~~~iiDtpG~~~-f-----~~~~---~~~~~~aD~~ilVvda~~g~~~qt~e--~---l~~~~~~~vp~iivviNK~D 130 (397)
T 1d2e_A 65 ARHYAHTDCPGHAD-Y-----VKNM---ITGTAPLDGCILVVAANDGPMPQTRE--H---LLLARQIGVEHVVVYVNKAD 130 (397)
T ss_dssp SCEEEEEECSSHHH-H-----HHHH---HHTSSCCSEEEEEEETTTCSCHHHHH--H---HHHHHHTTCCCEEEEEECGG
T ss_pred CeEEEEEECCChHH-H-----HHHH---HhhHhhCCEEEEEEECCCCCCHHHHH--H---HHHHHHcCCCeEEEEEECcc
Confidence 46899999999643 1 1112 22233457899999997653333221 1 1122346889 579999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCccc----------HHHHHH
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESS----------IRYVLS 258 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~----------l~~Ll~ 258 (284)
+..++ +..+. ....+.+++..+++ ..++|+||++|.| +..|++
T Consensus 131 l~~~~-~~~~~----------------------~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~ 187 (397)
T 1d2e_A 131 AVQDS-EMVEL----------------------VELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLD 187 (397)
T ss_dssp GCSCH-HHHHH----------------------HHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHH
T ss_pred cCCCH-HHHHH----------------------HHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHH
Confidence 97533 11111 11122334455553 5899999999874 899999
Q ss_pred HHHHhcCC
Q 023298 259 QIDNCIQW 266 (284)
Q Consensus 259 ~I~~~l~~ 266 (284)
.|.+.+|.
T Consensus 188 ~l~~~~p~ 195 (397)
T 1d2e_A 188 AVDTYIPV 195 (397)
T ss_dssp HHHHHSCC
T ss_pred HHHHhCCC
Confidence 99998874
No 110
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.27 E-value=2.9e-11 Score=103.30 Aligned_cols=122 Identities=11% Similarity=0.094 Sum_probs=69.6
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHH---HHHHHHHHHHhcCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFIS---GCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~---~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.+.++||||+...... ... .....+++++++|+.. +..+-. .++..+... ..+.|+++|+||+|
T Consensus 79 ~l~i~Dt~G~~~~~~~-------~~~--~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~D 145 (204)
T 4gzl_A 79 NLGLWDTAGLEDYDRL-------RPL--SYPQTDVFLICFSLVS---PASFENVRAKWYPEVRHH-CPNTPIILVGTKLD 145 (204)
T ss_dssp EEEEEEECCSGGGTTT-------GGG--GCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHH-CSSCCEEEEEECHH
T ss_pred EEEEEECCCchhhHHH-------HHH--HhccCCEEEEEEECCC---HHHHHHHHHHHHHHHHHh-CCCCCEEEEEechh
Confidence 5669999998542211 010 1223478999999863 333321 222221111 13799999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+.... ...+... +...... . .....++...++...++++||++|+|++++++.|.+.+
T Consensus 146 l~~~~-~~~~~~~--------~~~~~~v-~----~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 146 LRDDK-DTIEKLK--------EKKLTPI-T----YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHTCH-HHHHHHH--------HTTCCCC-C----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred hccch-hhhhhhh--------ccccccc-c----HHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 97654 2221110 0000000 0 01112333556777899999999999999999987753
No 111
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.27 E-value=2.1e-11 Score=100.34 Aligned_cols=111 Identities=10% Similarity=0.109 Sum_probs=66.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..+.++||||+........ ..+ ...+++++++|+.. +..+ +..++..+... ..+.|+++|+||+|
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~------~~~---~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~D 124 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITS------TYY---RGTHGVIVVYDVTS---AESFVNVKRWLHEINQN-CDDVCRILVGNKND 124 (181)
T ss_dssp EEEEEEEETTGGGCSSCCG------GGG---TTCSEEEEEEETTC---HHHHHHHHHHHHHHHHH-CTTSEEEEEEECTT
T ss_pred EEEEEEcCCCchhhhhhHH------HHh---ccCCEEEEEEECCC---HHHHHHHHHHHHHHHHh-CCCCCEEEEEECCC
Confidence 4689999999654321111 112 22468999999864 3333 22333322221 13689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+...+ ...... . .+.....+ ..++++||++|.|++++++.|.+.+.
T Consensus 125 l~~~~-~~~~~~------------------~-------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 125 DPERK-VVETED------------------A-------YKFAGQMG-IQLFETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp CGGGC-CSCHHH------------------H-------HHHHHHHT-CCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred Cchhc-ccCHHH------------------H-------HHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 86533 111000 0 11112223 48999999999999999999887653
No 112
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.26 E-value=1.8e-10 Score=94.69 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=68.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh--cCCC-EEEEec
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ--LELP-HVNILS 189 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~--~~~p-~IlVlN 189 (284)
.++.++||||+.... .... ..+.. .+++++++|+.. +..+ +..++..+..... .+.| +++|.|
T Consensus 56 ~~~~~~Dt~G~~~~~---~~~~---~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~n 123 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGG---KMLD---KYIYG---AQGVLLVYDITN---YQSFENLEDWYTVVKKVSEESETQPLVALVGN 123 (178)
T ss_dssp EEEEEEECTTCCTTC---TTHH---HHHTT---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred EEEEEEECCCCcccc---chhh---HHHhh---CCEEEEEEECCC---HHHHHHHHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 468999999976521 1111 12333 467999999863 3332 3333333322221 2567 789999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+|+...+ .+..- . ..++...++ ..++++||++|.|++++++.|.+.+..-
T Consensus 124 K~Dl~~~~-~~~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 124 KIDLEHMR-TIKPE------K-------------------HLRFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp CGGGGGGC-SSCHH------H-------------------HHHHHHHHT-CEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred cccccccc-ccCHH------H-------------------HHHHHHHcC-CcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 99986432 11000 0 011112233 4799999999999999999998877543
No 113
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.26 E-value=5.4e-11 Score=101.08 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=68.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHH---HHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI---SGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i---~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+.++||||+........ . .....+++++++|+.. +..+- ..++..+... ..+.|+++|+||+
T Consensus 73 ~~l~i~Dt~G~~~~~~~~~-------~--~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 139 (201)
T 2gco_A 73 VELALWDTAGQEDYDRLRP-------L--SYPDTDVILMCFSIDS---PDSLENIPEKWTPEVKHF-CPNVPIILVGNKK 139 (201)
T ss_dssp EEEEEECCCCSGGGTTTGG-------G--GCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHH-STTCCEEEEEECG
T ss_pred EEEEEEECCCchhHHHHHH-------H--hcCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHh-CCCCCEEEEEecH
Confidence 3678999999754221111 0 1222468899999863 33321 1222221111 1278999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhh-hcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELN-QHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~-~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+.... ...+.+. ++. .... .....++...++...++++||++|.|++++++.|.+.+
T Consensus 140 Dl~~~~-~~~~~~~--------~~~~~~v~------~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 140 DLRQDE-HTRRELA--------KMKQEPVR------SEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp GGTTCH-HHHHHHH--------TTTCCCCC------HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HhhcCc-cchhhhc--------ccccCcCC------HHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 997643 2211110 000 0000 00112233445666899999999999999999987653
No 114
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.26 E-value=8.5e-12 Score=110.66 Aligned_cols=133 Identities=11% Similarity=0.127 Sum_probs=75.1
Q ss_pred CCCEEEEeCCCCccccccc-chHHHHHHHHH-hcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEec-C
Q 023298 114 DDDYLVFDCPGQIELFTHV-PVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILS-K 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~-~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlN-K 190 (284)
+.++.|+||||+....... ...+.+.+.+. .....+++++++|+.........+...+.... -.....|.++|+| |
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~vv~nK 148 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIF-GEDAMGHTIVLFTHK 148 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHH-CGGGGGGEEEEEECG
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHh-CchhhccEEEEEEcc
Confidence 4578999999987643211 11223344332 23345789999999764333333333322100 0112578899998 9
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-----CceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-----MVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-----~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|+... .+..++... .. ..+.+++...+ +.. +|+||+++.|+++|+..|.+.++
T Consensus 149 ~Dl~~~--~~~~~i~~~-----------~~-------~~~~~~~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~ 207 (260)
T 2xtp_A 149 EDLNGG--SLMDYMHDS-----------DN-------KALSKLVAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLM 207 (260)
T ss_dssp GGGTTC--CHHHHHHHC-----------CC-------HHHHHHHHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc--cHHHHHHhc-----------ch-------HHHHHHHHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHH
Confidence 999742 233332100 00 00111222222 222 89999999999999999999887
Q ss_pred CCC
Q 023298 266 WGE 268 (284)
Q Consensus 266 ~g~ 268 (284)
.++
T Consensus 208 ~~~ 210 (260)
T 2xtp_A 208 EKN 210 (260)
T ss_dssp HTT
T ss_pred hCC
Confidence 755
No 115
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.26 E-value=3.9e-11 Score=100.61 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=66.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh---cCCCEEEEe
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ---LELPHVNIL 188 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~---~~~p~IlVl 188 (284)
+.++.++||||+.+.... . ...+.. .+++++++|+.. +..+ +..++..+..... .+.|+++|+
T Consensus 66 ~~~~~l~Dt~G~~~~~~~---~---~~~~~~---~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~piilv~ 133 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNL---W---EHYYKE---GQAIIFVIDSSD---RLRMVVAKEELDTLLNHPDIKHRRIPILFFA 133 (190)
T ss_dssp SCEEEEEEECCSTTTGGG---G---GGGGGG---CSEEEEEEETTC---HHHHHHHHHHHHHHHHSTTTTTSCCCEEEEE
T ss_pred CEEEEEEECCCCHHHHHH---H---HHHHhc---CCEEEEEEECCC---HHHHHHHHHHHHHHHhChhhccCCCeEEEEE
Confidence 357899999997652211 0 011222 468999999863 3322 2222222111111 478999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
||+|+.... ...+.. +.+. +..+ ....++++||++|+|++++++.|.+.+.
T Consensus 134 nK~Dl~~~~-~~~~~~--------~~~~-----------------~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 134 NKMDLRDAV-TSVKVS--------QLLC-----------------LENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp ECTTSTTCC-CHHHHH--------HHHT-----------------GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred eCcCcccCC-CHHHHH--------HHhC-----------------hhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 999996532 111111 0000 0111 1357999999999999999999988764
No 116
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.25 E-value=1e-09 Score=102.44 Aligned_cols=43 Identities=14% Similarity=-0.035 Sum_probs=38.3
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
..++++++-|.| +||||++.+||.++++.|+||++||+|||.+
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~ 67 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPAHS 67 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTTCH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 345667777888 9999999999999999999999999999875
No 117
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.25 E-value=2.2e-11 Score=117.41 Aligned_cols=120 Identities=11% Similarity=0.151 Sum_probs=73.4
Q ss_pred CCCEEEEeCCCCccccccc--chHHHH---HHHHHhcCCCeEEEEEecCCCCCC-HHHHHHHHHHHHHHHHhcCCCEEEE
Q 023298 114 DDDYLVFDCPGQIELFTHV--PVLRNF---VDHLKSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNI 187 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~--~~~~~l---~~~l~~~d~~~vil~LiDa~~~~~-~~~~i~~~l~~l~~~~~~~~p~IlV 187 (284)
+.++.++||||+....... ...... ...+.. .+++++++|+..... .+..+.. .+...++|.|+|
T Consensus 242 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~---ad~~llviD~~~~~~~~~~~~~~------~~~~~~~~~ilv 312 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR---SEVVAVVLDGEEGIIEQDKRIAG------YAHEAGKAVVIV 312 (456)
T ss_dssp TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHH---CSEEEEEEETTTCCCHHHHHHHH------HHHHTTCEEEEE
T ss_pred CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhh---CCEEEEEEeCCCCcCHHHHHHHH------HHHHcCCCEEEE
Confidence 3468999999964321000 001112 223433 368899999975433 2332322 233578999999
Q ss_pred ecCCccccchh-hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 188 LSKMDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 188 lNK~Dll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+||+|+..++. ..+++ ...+.+.+...+...++++||++|.|+++|++.|.+.+.
T Consensus 313 ~NK~Dl~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 313 VNKWDAVDKDESTMKEF-----------------------EENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp EECGGGSCCCSSHHHHH-----------------------HHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEChhcCCCchHHHHHH-----------------------HHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHH
Confidence 99999975331 11111 112233334455688999999999999999999988764
No 118
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.25 E-value=3.2e-11 Score=116.01 Aligned_cols=110 Identities=13% Similarity=0.191 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC-------HHHHHHHHHHHHHHHHhcCCC-EE
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-------VTKFISGCMASLSAMVQLELP-HV 185 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~-------~~~~i~~~l~~l~~~~~~~~p-~I 185 (284)
++++.|+||||+.. ....+...+.. .+++++++|+..... +... ..+......+.| .|
T Consensus 94 ~~~~~iiDTPGh~~------f~~~~~~~~~~---aD~~ilVVDa~~g~~e~~~~~~~qt~-----e~l~~~~~~~v~~iI 159 (439)
T 3j2k_7 94 KKHFTILDAPGHKS------FVPNMIGGASQ---ADLAVLVISARKGEFETGFEKGGQTR-----EHAMLAKTAGVKHLI 159 (439)
T ss_pred CeEEEEEECCChHH------HHHHHHhhHhh---CCEEEEEEECCCCccccccCCCchHH-----HHHHHHHHcCCCeEE
Confidence 56899999999643 23334444433 478999999975321 1111 111223356788 89
Q ss_pred EEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC-----ceEEEEeccCcccHHHHH
Q 023298 186 NILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM-----VSFMPLDLRKESSIRYVL 257 (284)
Q Consensus 186 lVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~-----~~~ipiSa~~~~~l~~Ll 257 (284)
+|+||+|+...+ .-+.. +......+.+++...++ ..|+|+||++|+|+.++.
T Consensus 160 vviNK~Dl~~~~-~~~~~-------------------~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~ 216 (439)
T 3j2k_7 160 VLINKMDDPTVN-WSNER-------------------YEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQS 216 (439)
T ss_pred EEeecCCCcccc-hHHHH-------------------HHHHHHHHHHHHHHhcccccCCeeEEEeeccCCccccccc
Confidence 999999986422 00000 11111222334444443 579999999999999843
No 119
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.25 E-value=9.6e-11 Score=98.90 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=66.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+..... +... .....+++++++|+....+-.. +..++..+... ...+.|+++|.||+|+
T Consensus 67 ~~~~i~Dt~G~~~~~~-------~~~~--~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARR-------LWKD--YFPEVNGIVFLVDAADPERFDE-ARVELDALFNIAELKDVPFVILGNKIDA 136 (190)
T ss_dssp EEEEEEECCCSGGGTT-------SGGG--GCTTCCEEEEEEETTCGGGHHH-HHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred EEEEEEECCCCHHHHH-------HHHH--HHhcCCEEEEEEECCChHHHHH-HHHHHHHHHcchhhcCCCEEEEEECCCC
Confidence 4678999999865211 1011 1122468999999874432222 22222221111 1257899999999998
Q ss_pred ccch--hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 194 VTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 194 l~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
.... .++.+++. ....... ..+.......++++||++|+|++++++.|.+.
T Consensus 137 ~~~~~~~~~~~~~~-----------~~~~~~~--------~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 137 PNAVSEAELRSALG-----------LLNTTGS--------QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTCCCHHHHHHHTT-----------CSSCCC-----------CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHhC-----------Ccccccc--------ccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 6421 01111111 0000000 00112234679999999999999999988764
No 120
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.25 E-value=2.7e-11 Score=102.53 Aligned_cols=110 Identities=10% Similarity=0.174 Sum_probs=66.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+.++||||+... ..+.. .+.. .+++++++|+.. +..+ +..++..+......+.|+++|+||+
T Consensus 57 ~~~~l~Dt~G~~~~-------~~~~~~~~~~---~d~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 123 (203)
T 1zbd_A 57 IKLQIWDTAGLERY-------RTITTAYYRG---AMGFILMYDITN---EESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 123 (203)
T ss_dssp EEEEEEEECCSGGG-------HHHHHTTGGG---CSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCSSCEEEEEEECT
T ss_pred EEEEEEECCCchhh-------cchHHHhhcC---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 46899999997541 11211 1222 467999999863 3332 3334333333222478999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+...+ ....- .. .++...++ ..++++||++|.|++++++.|.+.+
T Consensus 124 Dl~~~~-~~~~~------------------~~-------~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 124 DMEDER-VVSSE------------------RG-------RQLADHLG-FEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp TCTTSC-CSCHH------------------HH-------HHHHHHHT-CEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ccCccc-ccCHH------------------HH-------HHHHHHCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 986533 11100 00 11112333 4899999999999999888777654
No 121
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.25 E-value=4.4e-11 Score=99.05 Aligned_cols=114 Identities=15% Similarity=0.083 Sum_probs=66.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHH-HhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM-VQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~-~~~~~p~IlVlNK~ 191 (284)
.++.++||||+........ ..+ ...+++++++|... +..+ +..++..+... ...+.|+++|.||+
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~------~~~---~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 121 (181)
T 3t5g_A 54 YHLQLVDTAGQDEYSIFPQ------TYS---IDINGYILVYSVTS---IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKK 121 (181)
T ss_dssp EEEEEEECCCCCTTCCCCG------GGT---TTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHC----CCEEEEEECT
T ss_pred EEEEEEeCCCchhhhHHHH------HHH---hcCCEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 3678999999765321111 011 12467889999863 3332 33333322222 23478999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+.... .+..- ...++...++ ..++++||++|.|++++++.+.+.+..-
T Consensus 122 Dl~~~~-~~~~~-------------------------~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 122 DLHMER-VISYE-------------------------EGKALAESWN-AAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp TCTTTC-CSCHH-------------------------HHHHHHHHTT-CEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred cchhcc-eecHH-------------------------HHHHHHHHhC-CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 986432 11100 0011223333 4799999999999999999998876543
No 122
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=1.3e-10 Score=98.02 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=67.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK~ 191 (284)
..+.++||||+.. ... ....+.. .+++++++|+.. +..+ +..++..+.... ..+.|+++|.||+
T Consensus 76 ~~~~l~Dt~G~~~----~~~---~~~~~~~---~d~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~ 142 (196)
T 2atv_A 76 VSMEILDTAGQED----TIQ---REGHMRW---GEGFVLVYDITD---RGSFEEVLPLKNILDEIKKPKNVTLILVGNKA 142 (196)
T ss_dssp EEEEEEECCCCCC----CHH---HHHHHHH---CSEEEEEEETTC---HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECG
T ss_pred EEEEEEECCCCCc----ccc---hhhhhcc---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECc
Confidence 4678999999865 111 1122333 257899999863 3332 233333333332 2578999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcc-cHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKES-SIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~-~l~~Ll~~I~~~l 264 (284)
|+...+ ++... . . .++...++ ..++++||++|. |++++++.|.+.+
T Consensus 143 Dl~~~~-~v~~~------~------------~-------~~~~~~~~-~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 143 DLDHSR-QVSTE------E------------G-------EKLATELA-CAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp GGGGGC-CSCHH------H------------H-------HHHHHHHT-SEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred cccccc-ccCHH------H------------H-------HHHHHHhC-CeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 986532 11100 0 0 01112223 589999999999 9999999987765
No 123
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.25 E-value=8.3e-11 Score=97.10 Aligned_cols=109 Identities=10% Similarity=0.116 Sum_probs=65.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh---cCCCEEEEec
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ---LELPHVNILS 189 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~---~~~p~IlVlN 189 (284)
..+.++||||+.. . ..+.. .+++++++|+. ++..+ +..++..+..... .+.|+++|.|
T Consensus 54 ~~l~i~Dt~G~~~--------~---~~~~~---~d~~ilv~D~~---~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 116 (178)
T 2iwr_A 54 HLVLIREEAGAPD--------A---KFSGW---ADAVIFVFSLE---DENSFQAVSRLHGQLSSLRGEGRGGLALALVGT 116 (178)
T ss_dssp EEEEEEECSSSCC--------H---HHHHH---CSEEEEEEETT---CHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEE
T ss_pred EEEEEEECCCCch--------h---HHHHh---CCEEEEEEECc---CHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEE
Confidence 3578899999764 1 12333 35789999986 34333 2232222222222 3689999999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+|+....... ... + .+.++...++...++++||++|.|++++++.|.+.+
T Consensus 117 K~Dl~~~~~~~--v~~---~-------------------~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 117 QDRISASSPRV--VGD---A-------------------RARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp CTTCBTTBCCC--SCH---H-------------------HHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CccccccccCc--CCH---H-------------------HHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 99985211000 000 0 001112333446899999999999999999887654
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.25 E-value=1.8e-11 Score=119.15 Aligned_cols=116 Identities=10% Similarity=0.056 Sum_probs=64.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHH--HHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNF--VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l--~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+.+. . .....+ ..........+++++++|+....+... +......+..+ . ++|+|+|+||+
T Consensus 280 g~~l~liDT~G~~~~--~-~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~~~~~~l~~l-~-~~piIvV~NK~ 353 (476)
T 3gee_A 280 KTMFRLTDTAGLREA--G-EEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDE-LTEIRELKAAH-P-AAKFLTVANKL 353 (476)
T ss_dssp TEEEEEEC-----------------------CCCSSCSEEEEEEETTTCSSGGG-HHHHHHHHHHC-T-TSEEEEEEECT
T ss_pred CeEEEEEECCCCCcc--h-hHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhh-hHHHHHHHHhc-C-CCCEEEEEECc
Confidence 447899999998651 1 111111 222323344688999999986544321 11111111111 2 78999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+.... .... +++ .+.++..++++||++|+|+++|++.|.+.++
T Consensus 354 Dl~~~~-~~~~----------~~l-------------------~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 354 DRAANA-DALI----------RAI-------------------ADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TSCTTT-HHHH----------HHH-------------------HHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCCCcc-chhH----------HHH-------------------HhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 997544 2210 000 1112367999999999999999999999987
No 125
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=2.1e-11 Score=102.53 Aligned_cols=111 Identities=12% Similarity=0.181 Sum_probs=67.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
...+.++||||+... ..+.. .+.. .+++++++|+.. +..+ +..++..+......+.|+++|.||
T Consensus 71 ~~~~~i~Dt~G~~~~-------~~~~~~~~~~---~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK 137 (191)
T 3dz8_A 71 RVKLQIWDTAGQERY-------RTITTAYYRG---AMGFILMYDITN---EESFNAVQDWATQIKTYSWDNAQVILVGNK 137 (191)
T ss_dssp TEEEEEECHHHHHHC-------HHHHHHHHTT---CCEEEEEEETTC---HHHHHTHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEEEeCCChHHH-------HHHHHHHHcc---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 346899999995431 11222 2322 467899999863 3332 333433333333357899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+...+ ...... ..++...++ ..++++||++|.|++++++.|.+.+
T Consensus 138 ~Dl~~~~-~~~~~~-------------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 138 CDMEEER-VVPTEK-------------------------GQLLAEQLG-FDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp TTCGGGC-CSCHHH-------------------------HHHHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCcccc-ccCHHH-------------------------HHHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 9986432 111000 011112233 4899999999999999999887765
No 126
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.24 E-value=5.9e-11 Score=102.59 Aligned_cols=114 Identities=13% Similarity=0.068 Sum_probs=66.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..+.++||||+...... .... ....+++++++|+.. +..+ +..++..+......+.|+++|+||+|
T Consensus 62 ~~~~i~Dt~G~~~~~~~-------~~~~--~~~~d~vilV~D~~~---~~s~~~~~~~l~~i~~~~~~~~piilv~nK~D 129 (223)
T 3cpj_B 62 IKAQIWDTAGQERYRAI-------TSAY--YRGAVGALIVYDISK---SSSYENCNHWLSELRENADDNVAVGLIGNKSD 129 (223)
T ss_dssp EEEEEECCTTTTTTTCC-------CGGG--TTTCCEEEEEEC-CC---HHHHHHHHHHHHHHHHHCC--CEEEEEECCGG
T ss_pred EEEEEEECCCccchhhh-------HHHH--hccCCEEEEEEeCCC---HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 36799999997542111 0111 122467899999863 3332 33333333222234789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+.... ++... . ..++...++ ..++++||+++.|++++++.|.+.+...
T Consensus 130 l~~~~-~v~~~------~-------------------~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 130 LAHLR-AVPTE------E-------------------SKTFAQENQ-LLFTETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp GGGGC-CSCHH------H-------------------HHHHHHHTT-CEEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred ccccc-ccCHH------H-------------------HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 86532 11100 0 011112333 5899999999999999999998776543
No 127
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.24 E-value=8.9e-12 Score=101.52 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=60.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHH-HhcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM-VQLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~-~~~~~p~IlVlNK 190 (284)
..+.++||||+.+.. .+... +.. .+++++++|.. ++..+ +..++..+... ...+.|+++|.||
T Consensus 49 ~~~~i~D~~g~~~~~-------~~~~~~~~~---~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK 115 (166)
T 3q72_A 49 ASLMVYDIWEQDGGR-------WLPGHCMAM---GDAYVIVYSVT---DKGSFEKASELRVQLRRARQTDDVPIILVGNK 115 (166)
T ss_dssp EEEEEEECC-------------------------CCEEEEEEETT---CHHHHHHHHHHHHHHHHCC---CCCEEEEEEC
T ss_pred EEEEEEECCCCccch-------hhhhhhhhh---CCEEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEec
Confidence 367899999976521 11111 222 35788888886 33333 22332222211 1247899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+|+.... ++.... . .+....++ ..++++||++|+|++++++.|.+.+
T Consensus 116 ~Dl~~~~-~~~~~~----------------------~---~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 116 SDLVRSR-EVSVDE----------------------G---RACAVVFD-CKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp TTCCSSC-CSCHHH----------------------H---HHHHHHTT-CEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ccccccc-ccCHHH----------------------H---HHHHHHhC-CcEEEeccCCCCCHHHHHHHHHHHH
Confidence 9997543 221100 0 01112233 5899999999999999999988765
No 128
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.24 E-value=1.1e-10 Score=97.00 Aligned_cols=121 Identities=14% Similarity=0.258 Sum_probs=68.2
Q ss_pred CEEEEeCCCCcccccccchH----HHHH-HHHHh-cCCCeEEEEEecCCCCCCH-HHHHHH-----HHHHHHHHHhcCCC
Q 023298 116 DYLVFDCPGQIELFTHVPVL----RNFV-DHLKS-RNFNVCAVYLLDSQFITDV-TKFISG-----CMASLSAMVQLELP 183 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~----~~l~-~~l~~-~d~~~vil~LiDa~~~~~~-~~~i~~-----~l~~l~~~~~~~~p 183 (284)
++.++||||......+...+ ..+. ..+.. ++..+++++++|+....+. ..+... -..........+.|
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence 67899999964332222111 1122 22332 4445688899997532111 111100 00111223346899
Q ss_pred EEEEecCCccccchh-hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC------ceEEEEeccCcccHHHH
Q 023298 184 HVNILSKMDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM------VSFMPLDLRKESSIRYV 256 (284)
Q Consensus 184 ~IlVlNK~Dll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~------~~~ipiSa~~~~~l~~L 256 (284)
+++|+||+|+..... ....+ ...++. ..++++||++|+|++++
T Consensus 125 iilv~nK~Dl~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 174 (190)
T 2cxx_A 125 TIVAVNKLDKIKNVQEVINFL------------------------------AEKFEVPLSEIDKVFIPISAKFGDNIERL 174 (190)
T ss_dssp EEEEEECGGGCSCHHHHHHHH------------------------------HHHHTCCGGGHHHHEEECCTTTCTTHHHH
T ss_pred eEEEeehHhccCcHHHHHHHH------------------------------HHHhhhhhhccCCcEEEEecCCCCCHHHH
Confidence 999999999875320 11111 111221 35899999999999999
Q ss_pred HHHHHHhcCC
Q 023298 257 LSQIDNCIQW 266 (284)
Q Consensus 257 l~~I~~~l~~ 266 (284)
++.|.+.+.+
T Consensus 175 ~~~l~~~~~~ 184 (190)
T 2cxx_A 175 KNRIFEVIRE 184 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhcch
Confidence 9999887654
No 129
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.24 E-value=5.3e-10 Score=103.14 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=40.4
Q ss_pred cccccC-ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 13 MSWLYA-LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 13 ~~~~~~-~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
...-.+ ++++++-|.| +||||++.+||.++++.|+||++||+|||.+
T Consensus 7 l~~~~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~~~ 55 (324)
T 3zq6_A 7 FKFNKGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPAHS 55 (324)
T ss_dssp CCCBTTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSCC
T ss_pred hcCCCCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCCcC
Confidence 344456 5667777888 9999999999999999999999999999765
No 130
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.23 E-value=2.4e-11 Score=102.85 Aligned_cols=118 Identities=10% Similarity=0.084 Sum_probs=64.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH-HHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA-MVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~-~~~~~~p~IlVlNK~D 192 (284)
..++.++||||+... .... ...+.. .+++++++|+....+-.. +..++..+.. ....+.|+++|+||+|
T Consensus 72 ~~~~~i~Dt~G~~~~---~~~~---~~~~~~---~d~iilv~D~~~~~s~~~-~~~~l~~~~~~~~~~~~piilv~NK~D 141 (192)
T 2b6h_A 72 NICFTVWDVGGQDKI---RPLW---RHYFQN---TQGLIFVVDSNDRERVQE-SADELQKMLQEDELRDAVLLVFANKQD 141 (192)
T ss_dssp TEEEEEEECC--------CTTH---HHHHHT---CCEEEEEEETTCGGGHHH-HHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhH---HHHH---HHHhcc---CCEEEEEEECCCHHHHHH-HHHHHHHHhcccccCCCeEEEEEECCC
Confidence 347899999998542 1111 122333 367899999864422222 2222221111 1113789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.... ...++. +.+.. .. .......++++||++|.|++++++.|.+.+.
T Consensus 142 l~~~~-~~~~i~--------~~~~~--------------~~-~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 142 MPNAM-PVSELT--------DKLGL--------------QH-LRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp STTCC-CHHHHH--------HHTTG--------------GG-CSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCCCC-CHHHHH--------HHhCc--------------cc-ccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 86532 111111 11100 00 0111257999999999999999999988764
No 131
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.23 E-value=9.6e-11 Score=99.95 Aligned_cols=126 Identities=10% Similarity=0.129 Sum_probs=69.4
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+.++||||+.+...... . .....+++++++|+....+.......++..+.. ...+.|+++|+||+|+.
T Consensus 73 ~~~~i~Dt~G~~~~~~~~~-------~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 73 VELALWDTAGQEDYDRLRP-------L--SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKH-FCPNVPIILVANKKDLR 142 (207)
T ss_dssp EEEEEEECTTCTTCTTTGG-------G--GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECGGGG
T ss_pred EEEEEEECCCcHHHHHHHH-------h--hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEEchhhh
Confidence 3678999999765321100 0 112246889999986321111111222222211 11278999999999997
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
... ...+.+. ++...... .....++....+...++++||++|.|++++++.|.+.+
T Consensus 143 ~~~-~~~~~~~--------~~~~~~v~-----~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 143 SDE-HVRTELA--------RMKQEPVR-----TDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp GCH-HHHHHHH--------HTTCCCCC-----HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccc-cchhhhh--------hcccCCCC-----HHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 643 2221110 00000000 00112223445556899999999999999999998775
No 132
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.23 E-value=8.5e-11 Score=97.91 Aligned_cols=116 Identities=10% Similarity=0.016 Sum_probs=65.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+.+.... . ...+ ...+++++++|+....+.... ..++..+... ...+.|+++|+||+|
T Consensus 64 ~~~~~i~Dt~G~~~~~~~---~---~~~~---~~~d~ii~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~D 133 (181)
T 2h17_A 64 NTRFLMWDIGGQESLRSS---W---NTYY---TNTEFVIVVVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQD 133 (181)
T ss_dssp TEEEEEEEESSSGGGTCG---G---GGGG---TTCCEEEEEEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CEEEEEEECCCCHhHHHH---H---HHHh---ccCCEEEEEEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCC
Confidence 347899999998542111 0 0112 224689999998755433332 2222211111 125789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+.... ...++. +.+.. ..... ....++++||++|.|++++++.|.+.
T Consensus 134 l~~~~-~~~~i~--------~~~~~--------------~~~~~-~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 134 VKECM-TVAEIS--------QFLKL--------------TSIKD-HQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp STTCC-CHHHHH--------HHTTG--------------GGCCS-SCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred cccCC-CHHHHH--------HHhCc--------------ccccC-CceEEEEccCCCCcCHHHHHHHHHhh
Confidence 96532 111111 00000 00011 12479999999999999999988653
No 133
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.23 E-value=8.5e-11 Score=98.84 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=68.4
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+.++||||+.+.... ... .....+++++++|+....+.......++..+.. ...+.|+++|.||+|+.
T Consensus 71 ~~~~i~Dt~G~~~~~~~-------~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 71 FILHLWDTAGQEEYDRL-------RPL--SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH-YIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp EEEEEEEECCSGGGTTT-------GGG--GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTSEEEEEEECGGGC
T ss_pred EEEEEEECCCcHHHHHH-------hHh--hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhhc
Confidence 35689999997552211 010 112246889999986432211211223222221 12368999999999997
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
... .. .... ..+.++...++...++++||++|.|++++++.|.+.+..
T Consensus 141 ~~~-~~-~~~~----------------------~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 141 KDG-SD-DVTK----------------------QEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp CTT-TT-CCCH----------------------HHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred cCC-CC-cccH----------------------HHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 532 11 0000 001222344555669999999999999999999887643
No 134
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.23 E-value=5e-11 Score=104.48 Aligned_cols=130 Identities=12% Similarity=0.204 Sum_probs=70.5
Q ss_pred CCCEEEEeCCCCcccccc-cchHHHHHHHHH-hcCCCeEEEEEecCCCCCCHHHH-HHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTH-VPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKF-ISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~-~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~~~-i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+.++.++||||....... ......+.+.+. .....+++++++|+......... +..+...+. .....|+++|+||
T Consensus 77 ~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~--~~~~~~~iiv~nK 154 (239)
T 3lxx_A 77 ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFG--ERARSFMILIFTR 154 (239)
T ss_dssp TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHH--HHHGGGEEEEEEC
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhh--hhccceEEEEEeC
Confidence 347899999998763221 122334555543 22335789999998766543322 222211111 1234699999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccC-----cccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-----ESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~-----~~~l~~Ll~~I~~~l~ 265 (284)
+|++... .+.+++... ...+.++++.++ ..++++++.. ..++.+|+..|.+.+.
T Consensus 155 ~D~~~~~-~~~~~i~~~-------------------~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 155 KDDLGDT-NLHDYLREA-------------------PEDIQDLMDIFG-DRYCALNNKATGAEQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp GGGC--------------------------------CHHHHHHHHHHS-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCcc-cHHHHHHhc-------------------hHHHHHHHHHcC-CEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence 9998755 565555311 112234445555 3577787664 3799999999998885
Q ss_pred C
Q 023298 266 W 266 (284)
Q Consensus 266 ~ 266 (284)
+
T Consensus 214 ~ 214 (239)
T 3lxx_A 214 E 214 (239)
T ss_dssp H
T ss_pred H
Confidence 4
No 135
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.23 E-value=1e-10 Score=95.74 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=61.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHH-HhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAM-VQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~-~~~~~p~IlVlNK~ 191 (284)
.++.++||||+... .. ..+..... ...+++++++|... +..+ +..++..+... ...+.|+++|.||+
T Consensus 52 ~~~~~~D~~g~~~~-~~----~~~~~~~~--~~~~~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~ 121 (175)
T 2nzj_A 52 TTLVVVDTWEAEKL-DK----SWSQESCL--QGGSAYVIVYSIAD---RGSFESASELRIQLRRTHQADHVPIILVGNKA 121 (175)
T ss_dssp EEEEEECCC------------CHHHHHTT--TSCSEEEEEEETTC---HHHHHHHHHHHHHHHHCC----CCEEEEEECT
T ss_pred EEEEEEecCCCCcc-ch----hhhHHhhc--ccCCEEEEEEECCC---HHHHHHHHHHHHHHHHhhccCCCCEEEEEECh
Confidence 36789999997542 01 11112221 12467888888753 3332 22232222211 12378999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+...+ ++..- +. ..+...++ ..++++||++|.|++++++.|.+.+.
T Consensus 122 Dl~~~~-~v~~~----------~~---------------~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 122 DLARCR-EVSVE----------EG---------------RACAVVFD-CKFIETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp TCTTTC-CSCHH----------HH---------------HHHHHHHT-SEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hhcccc-ccCHH----------HH---------------HHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 996533 22100 00 01112223 58999999999999999999887653
No 136
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.22 E-value=3.7e-11 Score=109.13 Aligned_cols=123 Identities=11% Similarity=0.110 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCcccccc---cchHHHH----HHHHHhcCCCeEEEEEecCCC--CCCHHH-HHHHHHHHHHHHHhcCCC
Q 023298 114 DDDYLVFDCPGQIELFTH---VPVLRNF----VDHLKSRNFNVCAVYLLDSQF--ITDVTK-FISGCMASLSAMVQLELP 183 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~---~~~~~~l----~~~l~~~d~~~vil~LiDa~~--~~~~~~-~i~~~l~~l~~~~~~~~p 183 (284)
..+++++||||+...... ......+ ...+.. .+++++++|+.. ...... .+.. .+...+.|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iilvvd~~~~~~~~~~~~~i~~------~~~~~~~~ 200 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTPANTDLANSDALQLAK------EVDPEGKR 200 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEESSSCSTTCSHHHHHH------HHCSSCSS
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC---CCeEEEEEEecCcchhhhHHHHHHH------HhCCCCCc
Confidence 468999999998652110 1122222 223333 467888888632 222222 2322 22346899
Q ss_pred EEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhc--cCCceEEEEeccC---cccHHHHHH
Q 023298 184 HVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YSMVSFMPLDLRK---ESSIRYVLS 258 (284)
Q Consensus 184 ~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~--~~~~~~ipiSa~~---~~~l~~Ll~ 258 (284)
+++|+||+|+..+.....++++ . .+.. .++..++++|+.+ +.|+.++++
T Consensus 201 ~i~v~NK~Dl~~~~~~~~~~~~-----------~---------------~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~ 254 (315)
T 1jwy_B 201 TIGVITKLDLMDKGTDAMEVLT-----------G---------------RVIPLTLGFIGVINRSQEDIIAKKSIRESLK 254 (315)
T ss_dssp EEEEEECTTSSCSSCCCHHHHT-----------T---------------SSSCCTTCEEECCCCCHHHHSSSCCHHHHHH
T ss_pred EEEEEcCcccCCcchHHHHHHh-----------C---------------CCccCCCCeEEEecCChhhhccCCCHHHHHH
Confidence 9999999999864411222221 0 0011 2334556667777 899999999
Q ss_pred HHHHhcCCCCCCC
Q 023298 259 QIDNCIQWGEDAD 271 (284)
Q Consensus 259 ~I~~~l~~g~d~~ 271 (284)
.+.+.++.++..+
T Consensus 255 ~~~~~~~~~~~~~ 267 (315)
T 1jwy_B 255 SEILYFKNHPIYK 267 (315)
T ss_dssp HHHHHHHTCTTGG
T ss_pred HHHHHHhCCCccc
Confidence 9999999887643
No 137
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.22 E-value=7.7e-11 Score=111.61 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=31.3
Q ss_pred cCceEEEEEC-CC-CcHHHHHHHHHHHHH------hcCCceEEEecCcCCCC
Q 023298 17 YALVIKCVFS-PP-PNQSTYCSSLYRHCE------TVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 17 ~~~~~~~viG-~~-sGKTT~~~~La~~l~------~~g~~v~iVdLDPq~~~ 60 (284)
.+++.|.|++ .| +||||++.|||.+|+ ..|+||++||+|||++.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~~~l 160 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASS 160 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSSSGG
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCCh
Confidence 4566666664 47 999999999999999 68999999999999974
No 138
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.22 E-value=2.7e-11 Score=116.15 Aligned_cols=122 Identities=9% Similarity=0.076 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCcccccccc--hHHHHH---HHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 023298 114 DDDYLVFDCPGQIELFTHVP--VLRNFV---DHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 188 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~--~~~~l~---~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVl 188 (284)
+.++.++||||+........ .....+ ..+.. .+++++++|+....+..+. .+ +......++|+|+|+
T Consensus 222 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~---ad~~llv~D~~~~~s~~~~--~~---~~~~~~~~~~iiiv~ 293 (436)
T 2hjg_A 222 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR---SEVVAVVLDGEEGIIEQDK--RI---AGYAHEAGKAVVIVV 293 (436)
T ss_dssp TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHH---CSEEEEEEETTTCCCHHHH--HH---HHHHHHTTCEEEEEE
T ss_pred CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHh---CCEEEEEEcCCcCCcHHHH--HH---HHHHHHcCCcEEEEE
Confidence 34689999999743111000 011112 23333 3689999999765443332 11 122335689999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
||+|+..+. ... . .++...+.+.+.......++++||++|.|+++++..+.+.+.
T Consensus 294 NK~Dl~~~~-~~~-~--------------------~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 294 NKWDAVDKD-EST-M--------------------KEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp ECGGGSCCC-TTH-H--------------------HHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ECccCCCcc-hHH-H--------------------HHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence 999997643 210 0 011112223333445578999999999999999998887764
No 139
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.22 E-value=4.3e-11 Score=106.25 Aligned_cols=132 Identities=17% Similarity=0.107 Sum_probs=74.2
Q ss_pred CCCEEEEeCCCCcccccc--cchHHHHHHHHH-hcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTH--VPVLRNFVDHLK-SRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~--~~~~~~l~~~l~-~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+.++.++||||+...... ......+.+.+. .....+++++++|+......+..+...+...---...+.|+|+|.||
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEch
Confidence 447899999998642111 111122333331 22446789999999765433333333222110000126799999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccC-----cccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-----ESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~-----~~~l~~Ll~~I~~~l~ 265 (284)
+|+... .+.+++... . ...+.++++.++ .+++++++.. +.++.+|++.|.+.++
T Consensus 149 ~Dl~~~--~~~~~l~~~-----------~-------~~~l~~l~~~~g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 149 EDLAGG--SLHDYVSNT-----------E-------NRALRELVAECG-GRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp GGGTTC--CHHHHHHHC-----------C-------CHHHHHHHHHTT-TCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCC--CHHHHHhhc-----------c-------cHHHHHHHHHcC-CeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 998542 344433200 0 012234445555 3566666554 6899999999999987
Q ss_pred C
Q 023298 266 W 266 (284)
Q Consensus 266 ~ 266 (284)
+
T Consensus 208 ~ 208 (247)
T 3lxw_A 208 E 208 (247)
T ss_dssp H
T ss_pred H
Confidence 4
No 140
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.22 E-value=2.6e-10 Score=97.34 Aligned_cols=135 Identities=17% Similarity=0.185 Sum_probs=65.4
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHH-HhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHH-H--HHhcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFITDVTKFISGCMASLS-A--MVQLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l-~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~-~--~~~~~~p~IlVlNK 190 (284)
.++.++||||+... ...+.+.. .. .+++++++|+....+....+...+..+. . ....+.|+++|.||
T Consensus 54 ~~~~i~Dt~G~~~~------~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 124 (214)
T 2fh5_B 54 NSLTLIDLPGHESL------RFQLLDRFKSS---ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124 (214)
T ss_dssp CEEEEEECCCCHHH------HHHHHHHHGGG---EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEEC
T ss_pred cEEEEEECCCChhH------HHHHHHHHHhh---CCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEEC
Confidence 46899999997641 11133332 22 4689999998642111111222222111 1 11346899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhh---c-chhHHHHHHHHHHH-HHh----ccC------CceEEEEeccCc-----
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQ---H-MAPQFAKLNKSLIE-LVD----EYS------MVSFMPLDLRKE----- 250 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~---~-~~~~~~~l~~~i~~-~l~----~~~------~~~~ipiSa~~~----- 250 (284)
+|+.... ......+ .+...+.. . ....-..=...+.+ ++. .+. ...|+++||++|
T Consensus 125 ~Dl~~~~-~~~~~~~----~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~ 199 (214)
T 2fh5_B 125 QDIAMAK-SAKLIQQ----QLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTG 199 (214)
T ss_dssp TTSTTCC-CHHHHHH----HHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------
T ss_pred CCCCCcc-cHHHHHH----HHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccc
Confidence 9997643 2222211 11111110 0 00000000000000 111 011 457999999999
Q ss_pred -ccHHHHHHHHHHh
Q 023298 251 -SSIRYVLSQIDNC 263 (284)
Q Consensus 251 -~~l~~Ll~~I~~~ 263 (284)
.|++++++.|.+.
T Consensus 200 ~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 200 SADIQDLEKWLAKI 213 (214)
T ss_dssp CCBCHHHHHHHHHH
T ss_pred ccChHHHHHHHHHh
Confidence 9999999998765
No 141
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.20 E-value=5.9e-11 Score=111.20 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=36.6
Q ss_pred eEEEEE-CCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 20 VIKCVF-SPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 20 ~~~~vi-G~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
+++.|+ +.| |||||++.|||.+|++.|+||++||+|||++.+
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~ 45 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNAT 45 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChh
Confidence 446666 457 999999999999999999999999999998853
No 142
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.20 E-value=1.4e-10 Score=98.96 Aligned_cols=122 Identities=13% Similarity=0.095 Sum_probs=70.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHH---HHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI---SGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i---~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+.++||||+..... +... .....+++++++|... +..+- ..++..+.... .+.|+++|.||+
T Consensus 57 ~~~~i~Dt~G~~~~~~-------~~~~--~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~ 123 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSR-------LRPL--SYRGADIFVLAFSLIS---KASYENVLKKWMPELRRFA-PNVPIVLVGTKL 123 (212)
T ss_dssp EEEEEECCCCCCCCCC---------CG--GGTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHHC-TTCCEEEEEECH
T ss_pred EEEEEEECCCcHHHHH-------HHHh--hccCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCH
Confidence 3678999999865221 1111 1122468899999863 33331 12332222211 278999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
|+.... ......... + . .....++...++...++++||++|+|++++++.|.+.+...
T Consensus 124 Dl~~~~-~~~~~~~~~-------v---~-------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 124 DLRDDK-GYLADHTNV-------I---T-------STQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHTCH-HHHHTCSSC-------C---C-------HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HhhhCc-cccccccCC-------C---C-------HHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 997543 210000000 0 0 00012223445666899999999999999999998877543
No 143
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.20 E-value=1.3e-10 Score=97.64 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=67.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlNK~ 191 (284)
..+.++||||+.... .+.. .+++++++|... +..| +..++..+..... .+.|+++|.||+
T Consensus 67 ~~l~i~Dt~G~~~~~-----------~~~~---~~~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~ 129 (184)
T 3ihw_A 67 YLLLIRDEGGPPELQ-----------FAAW---VDAVVFVFSLED---EISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129 (184)
T ss_dssp EEEEEEECSSSCCHH-----------HHHH---CSEEEEEEETTC---HHHHHHHHHHHHHHHTTSCGGGSCEEEEEECT
T ss_pred EEEEEEECCCChhhh-----------eecC---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECc
Confidence 356789999975411 2333 357889999863 4333 2333333222211 468999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+....... ... ..+.++...++...++++||++|.|++++++.+.+.+
T Consensus 130 Dl~~~~~~~--v~~----------------------~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 130 AISAANPRV--IDD----------------------SRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp TCBTTBCCC--SCH----------------------HHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ccccccccc--cCH----------------------HHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 985321010 000 0012233455667899999999999999999887754
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.19 E-value=7.8e-11 Score=114.19 Aligned_cols=113 Identities=14% Similarity=0.103 Sum_probs=65.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHH--HHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNF--VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l--~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
+.++.++||||+.+.. ...+.+ .+........+++++++|+....+.... .++. .+ .++|.++|+||+
T Consensus 271 g~~v~liDT~G~~~~~---~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~--~i~~---~l--~~~piivV~NK~ 340 (462)
T 3geh_A 271 GIPVQVLDTAGIRETS---DQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQ--EIYE---QV--KHRPLILVMNKI 340 (462)
T ss_dssp TEEEEECC-----------------------CCCCSCSEEEEEEETTTCSCHHHH--HHHH---HH--TTSCEEEEEECT
T ss_pred CEEEEEEECCccccch---hHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHH--HHHH---hc--cCCcEEEEEECC
Confidence 4578999999985521 111221 2223334446889999999764333321 1111 11 237999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-CCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
|+.... ...... .+ ....++++||++|.|+++|++.|.+.+....
T Consensus 341 Dl~~~~-~~~~~~-------------------------------~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 341 DLVEKQ-LITSLE-------------------------------YPENITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TSSCGG-GSTTCC-------------------------------CCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred CCCcch-hhHHHH-------------------------------HhccCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 997644 222111 11 2357999999999999999999999987654
No 145
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.19 E-value=4.8e-11 Score=99.03 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=58.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++.++||||+..... +... .....+++++++|+.. +..+ +..++..+......+.|+++|.||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~-------~~~~--~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~piilv~nK~D 124 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRT-------ITTA--YYRGAMGIMLVYDITN---EKSFDNIRNWIRNIEEHASADVEKMILGNKCD 124 (183)
T ss_dssp EEEEEEEC----------------CCT--TTTTCSEEEEEEETTC---HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--
T ss_pred EEEEEEcCCCChhhhh-------hHHH--HHhcCCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcc
Confidence 4689999999754211 1011 1122468999999863 3332 33343333222234789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+...+ .+.. +. +.++...++ ..++++||++|.|+++++..|.+.+.
T Consensus 125 l~~~~-~v~~------~~-------------------~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 125 VNDKR-QVSK------ER-------------------GEKLALDYG-IKFMETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CCSCC-CSCH------HH-------------------HHHHHHHHT-CEEEECCC---CCHHHHHHHHHHHHH
T ss_pred CCccC-cCCH------HH-------------------HHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 86533 1100 00 011112233 48999999999999999999887654
No 146
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.19 E-value=1.2e-10 Score=100.07 Aligned_cols=123 Identities=12% Similarity=0.131 Sum_probs=65.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHHHH---HHHHHHHHHHhcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKFIS---GCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~i~---~~l~~l~~~~~~~~p~IlVlNK 190 (284)
..+.++||||+.+... +... +. ..+++++++|+. ++..+-. .++..+... ..+.|+++|.||
T Consensus 82 ~~l~l~Dt~G~~~~~~-------~~~~~~~---~~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK 147 (214)
T 2j1l_A 82 VHLHIWDTAGQDDYDR-------LRPLFYP---DASVLLLCFDVT---SPNSFDNIFNRWYPEVNHF-CKKVPIIVVGCK 147 (214)
T ss_dssp EEEEEEEC-------------------------CEEEEEEEEETT---CHHHHHHHHHTHHHHHHHH-CSSCCEEEEEEC
T ss_pred EEEEEEECCCchhhhH-------HHHHHhc---cCCEEEEEEECc---CHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEC
Confidence 3678999999754211 1111 22 247899999986 3433321 222222111 137899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|+.... ...+.++ ....... . .....++...++...++++||++|.|++++++.|.+.+.
T Consensus 148 ~Dl~~~~-~~~~~~~--------~~~~~~v-~----~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 148 TDLRKDK-SLVNKLR--------RNGLEPV-T----YHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp GGGGSCH-HHHHHHH--------HTTCCCC-C----HHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred hhhhccc-hhhhhhc--------ccccCcc-c----HHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 9997654 3322210 0000000 0 001122334556678999999999999999999887653
No 147
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.19 E-value=1.3e-10 Score=97.22 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=66.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH-HHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL-SAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l-~~~~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+.... ......+.. .+++++++|+....+... +..++..+ ......+.|+++|.||+|+
T Consensus 60 ~~l~i~Dt~G~~~~~------~~~~~~~~~---~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIR------PYWRSYFEN---TDILIYVIDSADRKRFEE-TGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp EEEEEEECSSCGGGH------HHHHHHHTT---CSEEEEEEETTCGGGHHH-HHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred EEEEEEECCCCHHHH------HHHHHHhCC---CCEEEEEEECcCHHHHHH-HHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 367899999975411 111122332 468999999864432222 22222211 1111247899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.... ...+.. +.+.. ..+. .....++++||++|+|++++++.|.+.+.
T Consensus 130 ~~~~-~~~~~~--------~~~~~--------------~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 130 LTAA-PASEIA--------EGLNL--------------HTIR-DRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp TTCC-CHHHHH--------HHTTG--------------GGCC-SSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred ccCC-CHHHHH--------HHhCc--------------hhcc-CCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 6533 211111 00000 0001 11257999999999999999999988764
No 148
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.19 E-value=1.2e-10 Score=112.03 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=84.9
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 96 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~ 96 (284)
+|..++++|++ |||||++.+||.+++..|++|++++.|++.... +..+-.+. +..++ |.-......+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a-------~eqL~~~~---~~~gv-~~~~~~~~~d- 163 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAA-------YDQLLQLG---NQIGV-QVYGEPNNQN- 163 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHH-------HHHHHHHH---HTTTC-CEECCTTCSC-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhH-------HHHHHHHH---HhcCC-ceeeccccCC-
Confidence 57889999999 999999999999999999999999999865320 11111111 11111 0000000000
Q ss_pred hhhcHHHHHHHHhhccC--CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q 023298 97 LEDNLDDWLAEELDNYL--DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 174 (284)
Q Consensus 97 ~~~~~~~~l~~~l~~~~--~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l 174 (284)
-..+..+.++... +++++||||||.............+........ .+.+++++|+....+... +.
T Consensus 164 ----p~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~-pd~vlLVlDa~~gq~a~~-~a------ 231 (433)
T 3kl4_A 164 ----PIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLK-PDDVILVIDASIGQKAYD-LA------ 231 (433)
T ss_dssp ----HHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHC-CSEEEEEEEGGGGGGGHH-HH------
T ss_pred ----HHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhC-CcceEEEEeCccchHHHH-HH------
Confidence 0011122233222 679999999997541111122233322222222 356889999964322222 11
Q ss_pred HHHHhcCCCEEEEecCCcccc
Q 023298 175 SAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 175 ~~~~~~~~p~IlVlNK~Dll~ 195 (284)
..+...-.+..+|+||+|...
T Consensus 232 ~~f~~~~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 232 SRFHQASPIGSVIITKMDGTA 252 (433)
T ss_dssp HHHHHHCSSEEEEEECGGGCS
T ss_pred HHHhcccCCcEEEEecccccc
Confidence 122223357899999999753
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.19 E-value=1.5e-10 Score=112.66 Aligned_cols=114 Identities=13% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.++||||+.. ....+...+ ...+++++++|+.....+...-. +..+...+.|+|+|+||+|+
T Consensus 72 ~~~i~iiDtPGh~~------~~~~~~~~~---~~aD~~ilVvda~~g~~~qt~e~-----l~~~~~~~ip~IvviNK~Dl 137 (482)
T 1wb1_A 72 NYRITLVDAPGHAD------LIRAVVSAA---DIIDLALIVVDAKEGPKTQTGEH-----MLILDHFNIPIIVVITKSDN 137 (482)
T ss_dssp TEEEEECCCSSHHH------HHHHHHHHT---TSCCEEEEEEETTTCSCHHHHHH-----HHHHHHTTCCBCEEEECTTS
T ss_pred CEEEEEEECCChHH------HHHHHHHHH---hhCCEEEEEEecCCCccHHHHHH-----HHHHHHcCCCEEEEEECCCc
Confidence 45789999999632 122222223 33578999999975433433311 11233568999999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-C--CceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-S--MVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-~--~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
...+ ..+... ..+.+++... + ...++|+||++|+|+++|++.|.+.++
T Consensus 138 ~~~~-~~~~~~-----------------------~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 138 AGTE-EIKRTE-----------------------MIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SCHH-HHHHHH-----------------------HHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccch-hHHHHH-----------------------HHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 7533 222221 1122333333 2 367999999999999999999999765
No 150
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.19 E-value=1.3e-10 Score=109.19 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=65.4
Q ss_pred cCceEEEEEC-CC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC---CCCCccccccccc------------cHHHHh
Q 023298 17 YALVIKCVFS-PP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN---FDYPVAMDIRELI------------SLEDVM 79 (284)
Q Consensus 17 ~~~~~~~viG-~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~---~~~~~~~dir~~i------------~~~~vm 79 (284)
.+++.+.|+| .| +||||++.+||.+|++.|+||++||+|++++. ++.++..++.+.+ .+++++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~~~i 220 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLESCI 220 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCTTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHHHTC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHHHHh
Confidence 3567788887 47 99999999999999999999999999977762 2222222232221 123322
Q ss_pred h----hcCcccCchhhhhhHhh-hhcHHHHHHHHhhccCCCCEEEEeCCCCcc
Q 023298 80 E----ELGLGPNGGLIYCMEHL-EDNLDDWLAEELDNYLDDDYLVFDCPGQIE 127 (284)
Q Consensus 80 ~----~~~lgPng~l~~~~e~~-~~~~~~~l~~~l~~~~~~~~viiDtPg~~e 127 (284)
. +..+.|.+........+ ...+ .++.+.+....++++|+||||+...
T Consensus 221 ~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~ll~~l~~~~~yD~VIID~p~~~~ 272 (373)
T 3fkq_A 221 KQSQEGVSYFSSTKVALDILEISYADI-DTLIGNIQGMDNYDEIIVDLPFSLE 272 (373)
T ss_dssp EECTTSCEECCCCSSGGGGGGCCHHHH-HHHHHHHHHTSCCSEEEEECCCCCC
T ss_pred hcCCCCEEEecCCCChHhHHhCCHHHH-HHHHHHHHhcCCCCEEEEeCCCCCC
Confidence 1 22333433322222111 1222 2334445433378999999998654
No 151
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.18 E-value=8.1e-11 Score=100.12 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=63.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHH-HhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAM-VQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK~Dl 193 (284)
.++.++||||+..... ... ..+.. .+++++++|+....+-.. +..++..+... ...+.|+++|.||+|+
T Consensus 69 ~~l~i~Dt~G~~~~~~---~~~---~~~~~---~d~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~~~piilv~NK~Dl 138 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARR---VWK---NYLPA---INGIVFLVDCADHERLLE-SKEELDSLMTDETIANVPILILGNKIDR 138 (198)
T ss_dssp EEEEEEEECC----CC---GGG---GGGGG---CSEEEEEEETTCGGGHHH-HHHHHHHHHTCGGGTTSCEEEEEECTTS
T ss_pred EEEEEEECCCcHhhHH---HHH---HHHhc---CCEEEEEEECCCHHHHHH-HHHHHHHHHhCcccCCCcEEEEEECCCc
Confidence 4678999999764211 000 11222 367999999864332222 22222221111 1247899999999998
Q ss_pred ccch--hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhc--cCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 194 VTNK--KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE--YSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 194 l~~~--~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~--~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.... .++.+++.. ..... ... ...+.+ .....++++||++|+|++++++.|.+.+
T Consensus 139 ~~~~~~~~~~~~~~~--------~~~~~-~~~-------~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 139 PEAISEERLREMFGL--------YGQTT-GKG-------SVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp TTCCCHHHHHHHHTC--------TTTCC-CSS-------CCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHhCc--------ccccc-ccc-------ccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 6411 012111110 00000 000 000000 1235799999999999999999987654
No 152
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.18 E-value=2.9e-10 Score=106.10 Aligned_cols=118 Identities=15% Similarity=0.263 Sum_probs=70.2
Q ss_pred CCEEEEeCCCCccccccc-chHH-HHHHHHHhcCCCeEEEEEecCCCCC--CHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHV-PVLR-NFVDHLKSRNFNVCAVYLLDSQFIT--DVTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~-~~~~-~l~~~l~~~d~~~vil~LiDa~~~~--~~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
.++.++||||+.+...+. ..+. +.+..+. ...+++++++|+.... +... ...++..+..... ++|+++|+||
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~--~~ad~illV~D~s~~~~~~~~~-~~~~~~~i~~~~~-~~piilV~NK 289 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALR--YLGNLIIYIFDPSEHCGFPLEE-QIHLFEEVHGEFK-DLPFLVVINK 289 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGG--GTCSEEEEEECTTCTTSSCHHH-HHHHHHHHHHHTT-TSCEEEEECC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHH--hcCCEEEEEEeCCccccCCHHH-HHHHHHHHHHhcC-CCCEEEEEEC
Confidence 367999999987632221 1111 1111221 2246899999976432 3332 2223222222222 7999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|+.... ++.+.. +.+... ...++++||++|+|+++|++.|.+.+.
T Consensus 290 ~Dl~~~~-~~~~~~---------------------------~~~~~~-~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 290 IDVADEE-NIKRLE---------------------------KFVKEK-GLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTCCHH-HHHHHH---------------------------HHHHHT-TCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred cccCChH-HHHHHH---------------------------HHHHhc-CCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 9987543 322111 111222 257899999999999999999988764
No 153
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.18 E-value=4.4e-11 Score=102.95 Aligned_cols=115 Identities=11% Similarity=0.151 Sum_probs=71.3
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..+.++||||+...... .. ..+.. .+++++++|+.. +..+ +..++..+.... .+.|+++|+||+|
T Consensus 64 ~~~~i~Dt~G~~~~~~~---~~---~~~~~---~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~D 130 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGGL---RD---GYYIQ---AQCAIIMFDVTS---RVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVD 130 (221)
T ss_dssp EEEEEEEECSGGGTSCC---CH---HHHTT---CCEEEEEEETTC---HHHHHTHHHHHHHHHHHS-TTCCEEEEEECTT
T ss_pred EEEEEEeCCChHHHhHH---HH---HHHhc---CCEEEEEEECCC---HHHHHHHHHHHHHHHHhC-CCCCEEEEEECCc
Confidence 46899999997542211 11 12322 467899999864 3332 223333222221 3789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDAD 271 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~ 271 (284)
+.... ....... +....+ ..++++||++|.|+++++..|.+.+...+...
T Consensus 131 l~~~~-~~~~~~~---------------------------~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~~~~ 180 (221)
T 3gj0_A 131 IKDRK-VKAKSIV---------------------------FHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180 (221)
T ss_dssp SSSCS-SCGGGCC---------------------------HHHHHT-CEEEECBGGGTBTTTHHHHHHHHHHHTCTTCC
T ss_pred ccccc-ccHHHHH---------------------------HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhCcccc
Confidence 86543 2111111 001122 58999999999999999999999887766544
No 154
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.18 E-value=1.4e-10 Score=109.57 Aligned_cols=43 Identities=12% Similarity=0.143 Sum_probs=36.6
Q ss_pred cCceEEEEEC-CC-CcHHHHHHHHHHHHH------hcCCceEEEecCcCCC
Q 023298 17 YALVIKCVFS-PP-PNQSTYCSSLYRHCE------TVRRTMHIVNLDPAAE 59 (284)
Q Consensus 17 ~~~~~~~viG-~~-sGKTT~~~~La~~l~------~~g~~v~iVdLDPq~~ 59 (284)
.+++.|.|++ .| +||||++.|||.+|+ ..|+||++||+|||++
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~~ 156 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSS 156 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTCH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCCC
Confidence 4566666664 46 999999999999999 4799999999999986
No 155
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.17 E-value=4.4e-10 Score=94.40 Aligned_cols=110 Identities=11% Similarity=0.111 Sum_probs=64.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh---cCCCEEEEec
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ---LELPHVNILS 189 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~---~~~p~IlVlN 189 (284)
..+.++||||+.... .. ...+.. .+++++++|.. ++..+ +..++..+..... .+.|+++|.|
T Consensus 69 ~~l~i~Dt~G~~~~~---~~----~~~~~~---~~~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~n 135 (187)
T 3c5c_A 69 VHLRVMDTADLDTPR---NC----ERYLNW---AHAFLVVYSVD---SRQSFDSSSSYLELLALHAKETQRSIPALLLGN 135 (187)
T ss_dssp EEEEEEECCC---CC---CT----HHHHTT---CSEEEEEEETT---CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_pred EEEEEEECCCCCcch---hH----HHHHhh---CCEEEEEEECC---CHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEE
Confidence 367899999976421 11 123333 35788888886 33333 3333333333222 4799999999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEec-cCcccHHHHHHHHHHhc
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDL-RKESSIRYVLSQIDNCI 264 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa-~~~~~l~~Ll~~I~~~l 264 (284)
|+|+...+ .+..- ...++...++ ..++++|| ++|+|++++++.|.+.+
T Consensus 136 K~Dl~~~~-~v~~~-------------------------~~~~~~~~~~-~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 136 KLDMAQYR-QVTKA-------------------------EGVALAGRFG-CLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CGGGGGGC-SSCHH-------------------------HHHHHHHHHT-CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CcchhhcC-ccCHH-------------------------HHHHHHHHcC-CcEEEEeecCccccHHHHHHHHHHHH
Confidence 99986432 11000 0011122334 48999999 89999999999988765
No 156
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=2.5e-10 Score=95.76 Aligned_cols=123 Identities=13% Similarity=0.111 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHH--H-HHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--S-GCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i--~-~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+.++||||+..... +... .....+++++++|+.. +..+- . .++..+... ..+.|+++|.||+
T Consensus 66 ~~~~i~D~~G~~~~~~-------~~~~--~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~ 132 (194)
T 2atx_A 66 YLLGLYDTAGQEDYDR-------LRPL--SYPMTDVFLICFSVVN---PASFQNVKEEWVPELKEY-APNVPFLLIGTQI 132 (194)
T ss_dssp EEEEEECCCCSSSSTT-------TGGG--GCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHH-STTCCEEEEEECT
T ss_pred EEEEEEECCCCcchhH-------HHHH--hcCCCCEEEEEEECCC---HHHHHHHHHHHHHHHHHh-CCCCCEEEEEECh
Confidence 3678999999765221 1011 1122468999999863 33331 1 222222211 1278999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+.... ...+.+.. ...... . .....++...++...++++||++|.|++++++.|.+.+
T Consensus 133 Dl~~~~-~~~~~~~~--------~~~~~v-~----~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 133 DLRDDP-KTLARLND--------MKEKPI-C----VEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp TSTTCH-HHHHHHTT--------TTCCCC-C----HHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhcccc-cchhhccc--------ccCccc-C----HHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 997643 22111100 000000 0 00112233445666899999999999999999987764
No 157
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.17 E-value=2.4e-10 Score=97.12 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEecC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILSK 190 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlNK 190 (284)
.++.+.||||+.... . .+.+. +.. .+++++++|.. ++..| +..++..+..... .+.|+++|.||
T Consensus 72 ~~l~i~Dt~g~~~~~---~---~~~~~~~~~---~d~~ilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK 139 (195)
T 3cbq_A 72 VTLVVYDIWEQGDAG---G---WLRDHCLQT---GDAFLIVFSVT---DRRSFSKVPETLLRLRAGRPHHDLPVILVGNK 139 (195)
T ss_dssp EEEEEECCCCCSGGG---H---HHHHHHHHH---CSEEEEEEETT---CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEEC
T ss_pred EEEEEEecCCCccch---h---hhHHHhhcc---CCEEEEEEECC---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEeec
Confidence 357889999986421 1 12222 333 35788899986 33333 3333332222211 37899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+|+...+ .+. . + + . .++...++ ..++++||++|.|++++++.|.+.+..
T Consensus 140 ~Dl~~~~-~v~-~-----~----~--------~-------~~~a~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 140 SDLARSR-EVS-L-----E----E--------G-------RHLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTCTTTC-CSC-H-----H----H--------H-------HHHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred hhccccC-CcC-H-----H----H--------H-------HHHHHHhC-CEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 9986533 110 0 0 0 0 11112334 589999999999999999999887643
No 158
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.17 E-value=5.3e-11 Score=110.14 Aligned_cols=120 Identities=13% Similarity=0.074 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+.++.|+||||+.... ... ...+.. .+++++++|+....+.......+...+......+.|+++|+||+|+
T Consensus 208 ~~~l~i~Dt~G~~~~~---~~~---~~~~~~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 278 (329)
T 3o47_A 208 NISFTVWDVGGQDKIR---PLW---RHYFQN---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278 (329)
T ss_dssp TEEEEEEECC-----C---CSH---HHHHTT---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred cEEEEEEECCCCHhHH---HHH---HHHhcc---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccC
Confidence 3478999999965422 111 112322 4789999999755443332211111111111237899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
.... ...++. ..+.. .........++++||++|.|+++|++.|.+.+..
T Consensus 279 ~~~~-~~~~i~--------~~~~~---------------~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 279 PNAM-NAAEIT--------DKLGL---------------HSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTCC-CHHHHH--------HHHTC---------------TTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred Cccc-CHHHHH--------HHhch---------------hhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 7543 222211 11100 0001123579999999999999999999887653
No 159
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=98.31 Aligned_cols=123 Identities=12% Similarity=0.074 Sum_probs=68.4
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHH--H-HHHHHHHHHHhcCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI--S-GCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i--~-~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.+.++||||+........ ..+. ..+++++++|+.. +..+- . .++..+... ..+.|+++|.||+|
T Consensus 69 ~~~i~Dt~G~~~~~~~~~------~~~~---~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~D 135 (201)
T 2q3h_A 69 RLQLCDTAGQDEFDKLRP------LCYT---NTDIFLLCFSVVS---PSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSD 135 (201)
T ss_dssp EEEEEECCCSTTCSSSGG------GGGT---TCSEEEEEEETTC---HHHHHHHHHTHHHHHHHH-CSSSCEEEEEECGG
T ss_pred EEEEEECCCCHHHHHHhH------hhcC---CCcEEEEEEECCC---HHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHh
Confidence 567999999865321111 0122 2468999999863 33331 1 232222221 12789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+.........+.+.. ..... .....++...++...++++||++|.|++++++.|.+.+.
T Consensus 136 l~~~~~~~~~~~~~~--------~~~v~------~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 136 LREDVKVLIELDKCK--------EKPVP------EEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp GGGCHHHHHHHHTTT--------CCCCC------HHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhchhhhhhhcccc--------cccCC------HHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 975431111110000 00000 001112223455668999999999999999998887653
No 160
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.17 E-value=5.4e-10 Score=107.15 Aligned_cols=120 Identities=15% Similarity=0.144 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCccccccc-c-----hHHHHHHHHHhcCCCeEEEEEecCCCCCCHHH-HHHHHHHHHHHHHhcCCCEEEE
Q 023298 115 DDYLVFDCPGQIELFTHV-P-----VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNI 187 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~-~-----~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~-~i~~~l~~l~~~~~~~~p~IlV 187 (284)
.++.++||||+....... . ........+.. .+++++++|+....+..+ .+. ..+...++|+++|
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~---ad~vllv~d~~~~~~~~~~~i~------~~l~~~~~~~ilv 298 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEK---ADVVVIVLDATQGITRQDQRMA------GLMERRGRASVVV 298 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHH---CSEEEEEEETTTCCCHHHHHHH------HHHHHTTCEEEEE
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhh---CCEEEEEEeCCCCCCHHHHHHH------HHHHHcCCCEEEE
Confidence 367889999973211000 0 00111233433 367889999875433332 122 2234578999999
Q ss_pred ecCCccccchh-hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 188 LSKMDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 188 lNK~Dll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+||+|+..+.. ...++ ...+.+.+...+...++++||++|.|+++|++.|.+.+..
T Consensus 299 ~NK~Dl~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 299 FNKWDLVVHREKRYDEF-----------------------TKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EECGGGSTTGGGCHHHH-----------------------HHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECccCCCchhhHHHHH-----------------------HHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99999975330 01111 1112223334456789999999999999999999877643
No 161
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.16 E-value=2.1e-10 Score=98.80 Aligned_cols=129 Identities=8% Similarity=-0.020 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+.++||||+...... ... .....+++++++|+....+....+..++..+... ..+.|+++|.||+|+.
T Consensus 75 ~~l~i~Dt~G~~~~~~~-------~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 75 VELSLWDTSGSPYYDNV-------RPL--CYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTDLR 144 (214)
T ss_dssp EEEEEEEECCSGGGTTT-------GGG--GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHH-CTTSEEEEEEECGGGG
T ss_pred EEEEEEECCCCHhHHHH-------HHH--HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhc
Confidence 46789999997642211 111 1122468999999874322222122333322222 2378999999999997
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCccc-HHHHHHHHHHhcCCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESS-IRYVLSQIDNCIQWG 267 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~-l~~Ll~~I~~~l~~g 267 (284)
.+........+ .-..... .....++...++...++++||++|.| ++++++.|.+.+...
T Consensus 145 ~~~~~~~~~~~--------~~~~~v~------~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 145 TDLSTLMELSH--------QKQAPIS------YEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp GCHHHHHHHHH--------TTCCCCC------HHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred cchhhhhhhcc--------cccCccC------HHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 53211111000 0000000 00112333455666899999999998 999999998876543
No 162
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.16 E-value=1.8e-10 Score=96.16 Aligned_cols=123 Identities=10% Similarity=0.034 Sum_probs=68.1
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHH---HHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFI---SGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i---~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
.++.++||||+...... ... .....+++++++|+.. +..+- ..++..+... ..+.|+++|.||+
T Consensus 55 ~~~~i~Dt~G~~~~~~~-------~~~--~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~ 121 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNV-------RPL--SYPDSDAVLICFDISR---PETLDSVLKKWKGEIQEF-CPNTKMLLVGCKS 121 (184)
T ss_dssp EEEEEEEECCSGGGTTT-------GGG--GCTTCSEEEEEEETTC---HHHHHHHHHTHHHHHHHH-CTTCEEEEEEECG
T ss_pred EEEEEEECCCChhhhhh-------HHh--hcCCCcEEEEEEECCC---HHHHHHHHHHHHHHHHHH-CCCCCEEEEEEcc
Confidence 36789999997542111 011 1122467899999863 33331 2232222221 1378999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEecc-CcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~-~~~~l~~Ll~~I~~~l 264 (284)
|+..+...+.++.+. ...... .....++...++...++++||+ ++.|++++++.|.+.+
T Consensus 122 Dl~~~~~~~~~~~~~--------~~~~v~------~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 122 DLRTDVSTLVELSNH--------RQTPVS------YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp GGGGCHHHHHHHHTT--------TCCCCC------HHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHhhhhhc--------ccCCCC------HHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 997533111111100 000000 0011223344556789999998 6999999999887653
No 163
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.16 E-value=1.8e-10 Score=110.56 Aligned_cols=152 Identities=12% Similarity=-0.005 Sum_probs=82.6
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 96 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~ 96 (284)
++.+++++|++ |||||++.+||.+++..|++|+++|+|++...... .+-.+.+. .+..+.|.+.-....+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~-------qL~~~~~~-~gv~v~~~~~~~~p~~i 168 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE-------QLRLLGEK-VGVPVLEVMDGESPESI 168 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHH-------HHHHHHHH-HTCCEEECCTTCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHH-------HHHHhccc-CCccEEecCCCCCHHHH
Confidence 67789999999 99999999999999999999999999998753210 00000100 01122222110000111
Q ss_pred hhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHH
Q 023298 97 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSA 176 (284)
Q Consensus 97 ~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~ 176 (284)
+. +.+. .+.. .++++|||||||.... .......+....... .++-+++++|+... .+.+.. +..
T Consensus 169 ~~----~~l~-~~~~-~~~DvVIIDTaG~l~~--d~~l~~el~~i~~~~-~pd~vlLVvDa~tg---q~av~~----a~~ 232 (425)
T 2ffh_A 169 RR----RVEE-KARL-EARDLILVDTAGRLQI--DEPLMGELARLKEVL-GPDEVLLVLDAMTG---QEALSV----ARA 232 (425)
T ss_dssp HH----HHHH-HHHH-TTCSEEEEECCCCSSC--CHHHHHHHHHHHHHH-CCSEEEEEEEGGGT---THHHHH----HHH
T ss_pred HH----HHHH-HHHH-CCCCEEEEcCCCcccc--cHHHHHHHHHhhhcc-CCceEEEEEeccch---HHHHHH----HHH
Confidence 11 1111 2211 1679999999998753 112222222211111 23557889998532 222211 111
Q ss_pred HH-hcCCCEEEEecCCccc
Q 023298 177 MV-QLELPHVNILSKMDLV 194 (284)
Q Consensus 177 ~~-~~~~p~IlVlNK~Dll 194 (284)
+. ..+ ..-+|+||+|..
T Consensus 233 f~~~l~-i~GVIlTKlD~~ 250 (425)
T 2ffh_A 233 FDEKVG-VTGLVLTKLDGD 250 (425)
T ss_dssp HHHHTC-CCEEEEESGGGC
T ss_pred HHhcCC-ceEEEEeCcCCc
Confidence 21 222 356799999974
No 164
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.16 E-value=5.6e-11 Score=106.81 Aligned_cols=88 Identities=9% Similarity=0.248 Sum_probs=45.0
Q ss_pred eEEEEEecCCC-CCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHH
Q 023298 149 VCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLN 227 (284)
Q Consensus 149 ~vil~LiDa~~-~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~ 227 (284)
++++|+++... ...+.+.- + +..+.. ++|+|+|+||+|++... ++..+.+
T Consensus 117 ~~~l~~i~~~~~~~~~~d~~--~---l~~l~~-~~pvi~V~nK~D~~~~~-e~~~~~~---------------------- 167 (274)
T 3t5d_A 117 QCCLYFIAPSGHGLKPLDIE--F---MKRLHE-KVNIIPLIAKADTLTPE-ECQQFKK---------------------- 167 (274)
T ss_dssp CEEEEEECSCCSSCCHHHHH--H---HHHHTT-TSCEEEEESSGGGSCHH-HHHHHHH----------------------
T ss_pred eEEEEEecCCCCCCCHHHHH--H---HHHHhc-cCCEEEEEeccCCCCHH-HHHHHHH----------------------
Confidence 36777775543 33333321 1 112223 79999999999997644 4433321
Q ss_pred HHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 228 KSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 228 ~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
.+.+.+...+ ..++++||.+++|+.++.+.|.+.+|..
T Consensus 168 -~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p~~ 205 (274)
T 3t5d_A 168 -QIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLPLA 205 (274)
T ss_dssp -HHHHHHHHTT-CCCCCC-----------CHHHHHTCSEE
T ss_pred -HHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCCcE
Confidence 1223333343 5688999999999999999999998863
No 165
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.16 E-value=7.8e-11 Score=120.18 Aligned_cols=124 Identities=10% Similarity=0.118 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCcccccc-------cchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHH-HHHHHHHHHHHHHhcCCCE
Q 023298 114 DDDYLVFDCPGQIELFTH-------VPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTK-FISGCMASLSAMVQLELPH 184 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~-------~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~-~i~~~l~~l~~~~~~~~p~ 184 (284)
..+++|+||||....... ......+.+.+. ..++++++++|+... ...+. .+. ..+...+.|+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d~l~ll------~~L~~~g~pv 220 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSDALKIA------KEVDPQGQRT 220 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCHHHHHH------HHHCTTCSSE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhHHHHHH------HHHHhcCCCE
Confidence 357999999998763211 112222233332 335789999999754 33332 232 2334568999
Q ss_pred EEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHH-hccCCceEEEEeccCcccHHHHHHHHHH-
Q 023298 185 VNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV-DEYSMVSFMPLDLRKESSIRYVLSQIDN- 262 (284)
Q Consensus 185 IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l-~~~~~~~~ipiSa~~~~~l~~Ll~~I~~- 262 (284)
|+|+||+|++.+......+.. + +.. ...++..++|+||++|.|++.|++.|.+
T Consensus 221 IlVlNKiDlv~~~~~~~~il~----------~---------------~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 221 IGVITKLDLMDEGTDARDVLE----------N---------------KLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp EEEEECTTSSCTTCCSHHHHT----------T---------------CSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred EEEEeCcccCCcchhhHHHHH----------H---------------HhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 999999999865411111110 0 000 1135678999999999999999999987
Q ss_pred --hcCCCCCC
Q 023298 263 --CIQWGEDA 270 (284)
Q Consensus 263 --~l~~g~d~ 270 (284)
.+++|+..
T Consensus 276 ~~ffpe~P~y 285 (772)
T 3zvr_A 276 RKFFLSHPSY 285 (772)
T ss_dssp HHHHHHCTTT
T ss_pred HHhccCCcch
Confidence 58888765
No 166
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.15 E-value=6.9e-11 Score=101.15 Aligned_cols=113 Identities=18% Similarity=0.271 Sum_probs=67.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh-cCCCEEEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ-LELPHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~-~~~p~IlVlN 189 (284)
..++.++||||+.. ...+.. .+.. .+++++++|+.. +..+ +..++..+..... .+.|+++|+|
T Consensus 83 ~~~l~l~Dt~G~~~-------~~~~~~~~~~~---~d~iilV~D~~~---~~s~~~~~~~l~~i~~~~~~~~~piilV~N 149 (217)
T 2f7s_A 83 KVHLQLWDTAGQER-------FRSLTTAFFRD---AMGFLLMFDLTS---QQSFLNVRNWMSQLQANAYCENPDIVLIGN 149 (217)
T ss_dssp EEEEEEEEEESHHH-------HHHHHHHHHTT---CCEEEEEEETTC---HHHHHHHHHHHHTCCCCCTTTCCEEEEEEE
T ss_pred eEEEEEEECCCcHh-------HHhHHHHHhcC---CCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCcCCCCEEEEEE
Confidence 34789999999543 111222 2322 468999999863 3332 2222221111111 4689999999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
|+|+.... .+... .+.++...++ ..++++||+++.|++++++.|.+.+..
T Consensus 150 K~Dl~~~~-~v~~~-------------------------~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 150 KADLPDQR-EVNER-------------------------QARELADKYG-IPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp CTTCGGGC-CSCHH-------------------------HHHHHHHHTT-CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCcccccc-ccCHH-------------------------HHHHHHHHCC-CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99986532 11100 0011122333 479999999999999999998877543
No 167
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.15 E-value=1.9e-10 Score=99.21 Aligned_cols=176 Identities=13% Similarity=0.155 Sum_probs=100.1
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCc----ccCchhhh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGL----GPNGGLIY 92 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~l----gPng~l~~ 92 (284)
++..++|+|.+ |||||++.+|+..+... .++.+|+.|++.+ +|... ++..+. ..+|.. .
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~~~-------~d~~~-------~~~~~~~~~~~~~~~~-~ 100 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVIAK-------FDAER-------MEKHGAKVVPLNTGKE-C 100 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETTTH-------HHHHH-------HHTTTCEEEEEECTTC-S
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCCCC-------ccHHH-------HHhcCCcEEEecCCce-E
Confidence 45668999999 99999999999987655 7899999998732 11100 000000 011211 1
Q ss_pred hhHhhhhcHHHHHHHHhhcc--CCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHH
Q 023298 93 CMEHLEDNLDDWLAEELDNY--LDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISG 169 (284)
Q Consensus 93 ~~e~~~~~~~~~l~~~l~~~--~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~ 169 (284)
++. . ..+.+.+... .+.+++++||+|.+..... +... ....+.++|+... ..+..+.
T Consensus 101 ~l~-----~-~~~~~~~~~l~~~~~d~~~id~~g~i~~~~s----------~~~~--~~~~~~v~~~~~~~~~~~~~~-- 160 (226)
T 2hf9_A 101 HLD-----A-HLVGHALEDLNLDEIDLLFIENVGNLICPAD----------FDLG--THKRIVVISTTEGDDTIEKHP-- 160 (226)
T ss_dssp SCC-----H-HHHHHHHTTSCGGGCSEEEEECCSCSSGGGG----------CCCS--CSEEEEEEEGGGCTTTTTTCH--
T ss_pred ecc-----H-HHHHHHHHHHhcCCCCEEEEeCCCCccCcch----------hhhc--cCcEEEEEecCcchhhHhhhh--
Confidence 111 0 0012233222 1558999999996542110 1111 2345667775322 1222111
Q ss_pred HHHHHHHHHhcCCCEEEEecCCccccchh-hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEec
Q 023298 170 CMASLSAMVQLELPHVNILSKMDLVTNKK-EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDL 247 (284)
Q Consensus 170 ~l~~l~~~~~~~~p~IlVlNK~Dll~~~~-~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa 247 (284)
...+.|.++|+||+|+..... ...+. .+.+..++ ...++++||
T Consensus 161 --------~~~~~~~iiv~NK~Dl~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~Sa 205 (226)
T 2hf9_A 161 --------GIMKTADLIVINKIDLADAVGADIKKM---------------------------ENDAKRINPDAEVVLLSL 205 (226)
T ss_dssp --------HHHTTCSEEEEECGGGHHHHTCCHHHH---------------------------HHHHHHHCTTSEEEECCT
T ss_pred --------hHhhcCCEEEEeccccCchhHHHHHHH---------------------------HHHHHHhCCCCeEEEEEe
Confidence 013689999999999864220 11111 11112222 368999999
Q ss_pred cCcccHHHHHHHHHHhc
Q 023298 248 RKESSIRYVLSQIDNCI 264 (284)
Q Consensus 248 ~~~~~l~~Ll~~I~~~l 264 (284)
++|.|+++|++.|.+.+
T Consensus 206 ~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 206 KTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999999988765
No 168
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.15 E-value=1.9e-09 Score=100.28 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=39.2
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
+++++++-|.| +||||++.+||.++++.|+||++||+|||.+
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHN 57 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSCH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 46778888999 9999999999999999999999999999987
No 169
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.15 E-value=4.4e-10 Score=108.89 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=69.1
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH-hcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV-QLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~-~~~~p~IlVlNK~D 192 (284)
+..+.++||||+...... . ...+ ...+++++++|+....+... +..++..+.... ..++|+|+|+||+|
T Consensus 365 ~~~~~l~Dt~G~~~~~~~---~---~~~~---~~ad~~i~V~D~~~~~s~~~-~~~~~~~~~~~~~~~~~p~ilv~NK~D 434 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPL---W---RHYY---TGTQGLIFVVDCADRDRIDE-ARQELHRIINDREMRDAIILIFANKQD 434 (497)
T ss_dssp SCEEEEEEECCCGGGSGG---G---GGGG---TTCCEEEEEEETTCGGGHHH-HHHHHHHHHTSGGGTTCEEEEEEECCS
T ss_pred CEEEEEEECCCcHHHHHH---H---HHHh---ccCCEEEEEEECcchhHHHH-HHHHHHHHhhhhhcCCCcEEEEEECCC
Confidence 457899999997552211 0 0112 23578999999875432222 222222111111 14789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGEDAD 271 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d~~ 271 (284)
+.... ...++. ..+.. . ........++++||++|+|++++++.|.+.+......+
T Consensus 435 l~~~~-~~~~~~--------~~~~~--------------~-~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~ 489 (497)
T 3lvq_E 435 LPDAM-KPHEIQ--------EKLGL--------------T-RIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKLAAA 489 (497)
T ss_dssp SSSCC-CHHHHH--------HHTTC--------------T-TCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC------
T ss_pred CCcCC-CHHHHH--------HHhch--------------h-hhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 86532 111111 11100 0 00112357999999999999999999999886554433
No 170
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.14 E-value=1.3e-10 Score=112.91 Aligned_cols=105 Identities=14% Similarity=0.216 Sum_probs=60.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-------CHHHHHHHHHHHHHHHHhcC-CCEE
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-------DVTKFISGCMASLSAMVQLE-LPHV 185 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-------~~~~~i~~~l~~l~~~~~~~-~p~I 185 (284)
+.++.|+||||+.. ....+...+.. .+++++++|+.... .+... .. +......+ .|.|
T Consensus 110 ~~~~~iiDTPG~~~------f~~~~~~~~~~---aD~~llVvDa~~g~~~~~~~~~~qt~--e~---~~~~~~~~~~~iI 175 (483)
T 3p26_A 110 RANFTIVDAPGHRD------FVPNAIMGISQ---ADMAILCVDCSTNAFESGFDLDGQTK--EH---MLLASSLGIHNLI 175 (483)
T ss_dssp SCEEEEECCCCCGG------GHHHHHHHHTT---CSEEEEEEECCC------CCCCHHHH--HH---HHHHHHTTCCCEE
T ss_pred CceEEEEECCCcHH------HHHHHHHhhhh---CCEEEEEEECCCCccccccchhhhHH--HH---HHHHHHcCCCcEE
Confidence 56899999999744 23334444433 47899999997531 11111 11 11222345 4699
Q ss_pred EEecCCccccch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC----CceEEEEeccCcccHHH
Q 023298 186 NILSKMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS----MVSFMPLDLRKESSIRY 255 (284)
Q Consensus 186 lVlNK~Dll~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~----~~~~ipiSa~~~~~l~~ 255 (284)
+|+||+|+.... ...++. ...+.+++...+ ...|+|+||++|+|+.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i-----------------------~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEI-----------------------KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp EEEECGGGGTTCHHHHHHH-----------------------HHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred EEEECcCcccchHHHHHHH-----------------------HHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 999999997522 011111 112223333333 35799999999999873
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.14 E-value=1.8e-10 Score=103.54 Aligned_cols=119 Identities=9% Similarity=0.111 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCccccc---ccc---hHHHH-HHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 023298 115 DDYLVFDCPGQIELFT---HVP---VLRNF-VDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNI 187 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~---~~~---~~~~l-~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlV 187 (284)
.++.++||||+..... ... ....+ ...+.. ...++++++|+..-....+.. .+ +..+...+.|+++|
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~il~v~d~~~~~~~~~~~-~~---~~~~~~~~~~~i~V 198 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSDAL-KI---AKEVDPQGQRTIGV 198 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS--TTEEEEEEEESSSCGGGCHHH-HH---HHHHCTTCSSEEEE
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC--CCeEEEEEecCCcchhhhHHH-HH---HHHhCCCCCeEEEE
Confidence 6899999999864221 111 11222 233332 235666899986532222211 11 12233467899999
Q ss_pred ecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 188 LSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 188 lNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+||+|+..+.....+.++. .+. ....++..++++||++|.|+++|++.|.+.
T Consensus 199 ~NK~Dl~~~~~~~~~~~~~-------~~~-----------------~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 199 ITKLDLMDEGTDARDVLEN-------KLL-----------------PLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp EECGGGSCTTCCCHHHHTT-------CSS-----------------CCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred EEccccCCCCchHHHHHhC-------CcC-----------------cCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 9999997644112222110 000 001134578999999999999999988763
No 172
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.14 E-value=1.7e-10 Score=97.25 Aligned_cols=110 Identities=13% Similarity=0.163 Sum_probs=57.9
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh---cCCCEEEEecC
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ---LELPHVNILSK 190 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~---~~~p~IlVlNK 190 (284)
.+.++||||+... ..+... .....+++++++|+.. +..+ +..++..+..... .+.|+++|+||
T Consensus 74 ~~~l~Dt~G~~~~-------~~~~~~--~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 74 ELFLLDTAGSDLY-------KEQISQ--YWNGVYYAILVFDVSS---MESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp EEEEEETTTTHHH-------HHHHST--TCCCCCEEEEEEETTC---HHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred EEEEEECCCcHHH-------HHHHHH--HHhhCcEEEEEEECCC---HHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 6899999997531 111111 1233578999999863 3332 3334333333222 47899999999
Q ss_pred Ccccc-chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccC-cccHHHHHHHHHHhc
Q 023298 191 MDLVT-NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRK-ESSIRYVLSQIDNCI 264 (284)
Q Consensus 191 ~Dll~-~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~-~~~l~~Ll~~I~~~l 264 (284)
+|+.. .. .+.. + .+.++...++ ..++++||++ |.|++++++.|.+.+
T Consensus 142 ~Dl~~~~~-~v~~------~-------------------~~~~~~~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 142 TDLPPQRH-QVRL------D-------------------MAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp C--------CCCH------H-------------------HHHHHHHHTT-CEEEECCC-------CHHHHHHHHHH
T ss_pred cccchhhc-cCCH------H-------------------HHHHHHHHcC-CEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 99865 22 1110 0 0012223344 5899999999 999999999888765
No 173
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.14 E-value=2.5e-10 Score=97.88 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=67.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.++||||+..... +... .....+++++++|+....+.......++..+... ..+.|+++|.||+|+.
T Consensus 76 ~~l~i~Dt~G~~~~~~-------~~~~--~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 76 IELSLWDTSGSPYYDN-------VRPL--SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLR 145 (205)
T ss_dssp EEEEEEEECCSGGGTT-------TGGG--GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGG
T ss_pred EEEEEEeCCCcHhhhH-------HHHh--hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEechhhc
Confidence 3689999999754211 1111 1122467999999863221111112233222221 1378999999999997
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEecc-CcccHHHHHHHHHHh
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLR-KESSIRYVLSQIDNC 263 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~-~~~~l~~Ll~~I~~~ 263 (284)
.+...+.++.+.. ..... .....++...++...++++||+ ++.|++++++.|.+.
T Consensus 146 ~~~~~~~~~~~~~--------~~~v~------~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~ 201 (205)
T 1gwn_A 146 TDVSTLVELSNHR--------QTPVS------YDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 201 (205)
T ss_dssp GCHHHHHHHHTTT--------CCCCC------HHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccc--------cCCCC------HHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHH
Confidence 5331221111000 00000 0011222334555789999998 799999999988765
No 174
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.13 E-value=5.5e-11 Score=114.08 Aligned_cols=113 Identities=13% Similarity=0.189 Sum_probs=71.9
Q ss_pred CEEEEeCCCCcccccc-cchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 116 DYLVFDCPGQIELFTH-VPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~-~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
++.++||||+...-.. .....+....+.. .+++++++|+ ....... .+ +..+...++|+++|+||+|+.
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~---aD~vllVvD~-~~~~~~~---~~---l~~l~~~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYR---ADCGILVTDS-APTPYED---DV---VNLFKEMEIPFVVVVNKIDVL 153 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTS---CSEEEEECSS-SCCHHHH---HH---HHHHHHTTCCEEEECCCCTTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhc---CCEEEEEEeC-CChHHHH---HH---HHHHHhcCCCEEEEEeCcCCC
Confidence 6899999998753211 1112223333433 4689999998 2222222 22 223345689999999999997
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
... .. +.. + ++.+.++ ..++++||++|.|++++++.|.+.++..
T Consensus 154 ~~~-~~-~~~--------~------------------~l~~~~g-~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 154 GEK-AE-ELK--------G------------------LYESRYE-AKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp TCC-CT-HHH--------H------------------HSSCCTT-CCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred Ccc-HH-HHH--------H------------------HHHHHcC-CCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 644 21 110 0 1112233 5899999999999999999999999877
No 175
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.13 E-value=2.3e-10 Score=114.46 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=60.8
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHH-HhcCCCeEEEEEecCCCC--------CCHHHHHHHHHHHHHHHHhcCCC-
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFI--------TDVTKFISGCMASLSAMVQLELP- 183 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l-~~~d~~~vil~LiDa~~~--------~~~~~~i~~~l~~l~~~~~~~~p- 183 (284)
+.++.|+||||+.. +.+.+ ......+++++++|+... ....... +......+.|
T Consensus 244 ~~~~~iiDTPG~e~----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~------l~~~~~lgi~~ 307 (611)
T 3izq_1 244 RANFTIVDAPGHRD----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEH------MLLASSLGIHN 307 (611)
T ss_dssp SCEEEEEECCSSSC----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHH------HHHHHTTTCCE
T ss_pred CceEEEEECCCCcc----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHH------HHHHHHcCCCe
Confidence 56899999999744 22222 223346789999999641 1111111 1122345655
Q ss_pred EEEEecCCccccch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcccHHHH
Q 023298 184 HVNILSKMDLVTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIRYV 256 (284)
Q Consensus 184 ~IlVlNK~Dll~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~l~~L 256 (284)
+|+|+||+|+.... ...... ...+.+++...++ ..++|+||++|+|+.++
T Consensus 308 iIVVvNKiDl~~~~~~~~~ei-----------------------~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 308 LIIAMNKMDNVDWSQQRFEEI-----------------------KSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEEECTTTTTTCHHHHHHH-----------------------HHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEEEecccccchhHHHHHHH-----------------------HHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 89999999997521 011111 1122333344443 58999999999999843
No 176
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.13 E-value=7.5e-11 Score=116.07 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=44.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH-HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF-ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~-i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++++.++||||+.... ....+.+.. .+++++++|+......... ++ ......++|+++|+||+|
T Consensus 81 ~~~i~liDTPG~~df~------~~~~~~l~~---aD~allVvDa~~g~~~~t~~~~------~~~~~~~iPiivviNK~D 145 (528)
T 3tr5_A 81 DYLINLLDTPGHADFT------EDTYRTLTA---VDSALMVIDAAKGVEPRTIKLM------EVCRLRHTPIMTFINKMD 145 (528)
T ss_dssp TEEEEEECCCCSTTCC------HHHHHGGGG---CSEEEEEEETTTCSCHHHHHHH------HHHHTTTCCEEEEEECTT
T ss_pred CEEEEEEECCCchhHH------HHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHH------HHHHHcCCCEEEEEeCCC
Confidence 4578999999976521 122333433 4689999999865443332 22 233456899999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
+..
T Consensus 146 l~~ 148 (528)
T 3tr5_A 146 RDT 148 (528)
T ss_dssp SCC
T ss_pred Ccc
Confidence 964
No 177
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.13 E-value=4.8e-10 Score=97.88 Aligned_cols=113 Identities=12% Similarity=0.207 Sum_probs=69.2
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.+-|.||+|+-... . +.+. +.. .++++++.|.. ++..| +..++..+......+.|+|+|.||+|
T Consensus 63 ~l~iwDtaGqe~~~---~----l~~~~~~~---a~~~ilv~di~---~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~D 129 (216)
T 4dkx_A 63 RLQLWDTAGLERFR---S----LIPSYIRD---SAAAVVVYDIT---NVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD 129 (216)
T ss_dssp EEEEECCSCTTTCG---G----GHHHHHTT---CSEEEEEEETT---CHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTT
T ss_pred EEEEEECCCchhhh---h----HHHHHhcc---ccEEEEEeecc---hhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 56789999986522 2 2222 222 35677777765 44444 44555544444445789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
+...+ .+..- .. .++..+++ ..|+.+||++|.|++++++.|.+.+..-+
T Consensus 130 l~~~r-~V~~~------------------e~-------~~~a~~~~-~~~~e~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 130 LADKR-QVSIE------------------EG-------ERKAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp CGGGC-CSCHH------------------HH-------HHHHHHHT-CEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred hHhcC-cccHH------------------HH-------hhHHHHhC-CeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence 86533 21100 00 11123344 46999999999999999999998886543
No 178
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.12 E-value=7.4e-10 Score=110.43 Aligned_cols=128 Identities=18% Similarity=0.209 Sum_probs=71.8
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
++.|+||||+........ ......+++++++|+...-.+..+- .+..+...+.|+++|+||+|+..
T Consensus 71 ~i~liDTPGhe~F~~~~~---------r~~~~aD~aILVvDa~~Gv~~qT~e-----~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTTLRK---------RGGALADLAILIVDINEGFKPQTQE-----ALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCTTSBC---------SSSBSCSEEEEEEETTTCCCHHHHH-----HHHHHHHTTCCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHHHHHH---------HHHhhCCEEEEEEECCCCccHhHHH-----HHHHHHHcCCeEEEEeccccccc
Confidence 589999999754321111 1123357899999997644454431 11223457899999999999964
Q ss_pred chh--hhhhhcCcchHHHHHHhhhcchhHHHHHH---HHHHHHHhcc--------------CCceEEEEeccCcccHHHH
Q 023298 196 NKK--EIEDYLNPESQFLLSELNQHMAPQFAKLN---KSLIELVDEY--------------SMVSFMPLDLRKESSIRYV 256 (284)
Q Consensus 196 ~~~--~l~~~l~~~~~~l~~~l~~~~~~~~~~l~---~~i~~~l~~~--------------~~~~~ipiSa~~~~~l~~L 256 (284)
... .-..+. +.+..........+. ..+.+.+.+. ....++|+||++|.|+++|
T Consensus 137 ~~~~~~~~~~~--------e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eL 208 (594)
T 1g7s_A 137 GWRVHEGRPFM--------ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPEL 208 (594)
T ss_dssp TCCCCTTCCHH--------HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHH
T ss_pred ccccccCCchH--------HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhH
Confidence 210 000111 111100000000111 1112222222 2247999999999999999
Q ss_pred HHHHHHhcC
Q 023298 257 LSQIDNCIQ 265 (284)
Q Consensus 257 l~~I~~~l~ 265 (284)
++.|...++
T Consensus 209 l~~I~~~~~ 217 (594)
T 1g7s_A 209 LTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcc
Confidence 999998775
No 179
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.12 E-value=1.2e-09 Score=92.20 Aligned_cols=127 Identities=17% Similarity=0.229 Sum_probs=68.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
..++.++||||+........ . ....+.. .+++++++|+.... +....+..++..+.. ...+.|+++|.||+|
T Consensus 68 ~~~l~i~Dt~G~~~~~~~~~-~--~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~-~~~~~piilv~nK~D 140 (196)
T 3llu_A 68 FVNFQIWDFPGQMDFFDPTF-D--YEMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYK-VNPDMNFEVFIHKVD 140 (196)
T ss_dssp SCCEEEEECCSSCCTTCTTC-C--HHHHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHH-HCTTCEEEEEEECGG
T ss_pred eeEEEEEECCCCHHHHhhhh-h--ccccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHh-cCCCCcEEEEEeccc
Confidence 45789999999765221110 0 0122333 36789999987531 111223333322111 234789999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
++..+..+.... .+. ......+++.........++++||++ .|+++++..|.+.+
T Consensus 141 l~~~~~~~~~~~---------~v~-------~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 141 GLSDDHKIETQR---------DIH-------QRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp GSCHHHHHHHHH---------HHH-------HHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCchhhhhHHHh---------HHH-------HHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 976431111100 000 00011111111112236899999999 99999999887643
No 180
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.12 E-value=3.8e-10 Score=106.12 Aligned_cols=131 Identities=15% Similarity=0.224 Sum_probs=73.5
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC-HHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~-~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..+.++||||++.-.. ......+...+......+++++++|++...+ ....+..+...+..+...+.|+++|.||+|+
T Consensus 226 ~~v~l~DT~G~i~~lp-~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl 304 (364)
T 2qtf_A 226 RKIMLVDTVGFIRGIP-PQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK 304 (364)
T ss_dssp EEEEEEECCCBCSSCC-GGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG
T ss_pred EEEEEEeCCCchhcCC-HHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC
Confidence 3578999999865322 2223334333433333578999999864321 1122222222222222247899999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGED 269 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d 269 (284)
.+.. .....+ ....++..+. .....++|+||++++|++.|++.|.+.++.++.
T Consensus 305 ~~~~--~~~~~~--------------------~~~~l~~~l~-~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 305 INGD--LYKKLD--------------------LVEKLSKELY-SPIFDVIPISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CCSC--HHHHHH--------------------HHHHHHHHHC-SCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred CCch--HHHHHH--------------------HHHHHHHHhc-CCCCcEEEEECCCCcCHHHHHHHHHHHhcccCC
Confidence 7532 111100 0001111110 112368999999999999999999988765444
No 181
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.12 E-value=5.5e-11 Score=107.51 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=35.6
Q ss_pred eEEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCc-CCCC
Q 023298 20 VIKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDP-AAEN 60 (284)
Q Consensus 20 ~~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDP-q~~~ 60 (284)
+++.|+|. | +||||++.+||.+|++.|+||++||+|| |.+.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l 48 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTS 48 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCH
Confidence 45666654 6 9999999999999999999999999999 7664
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.12 E-value=2.6e-11 Score=120.85 Aligned_cols=114 Identities=18% Similarity=0.316 Sum_probs=63.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC--------CCHHHHHHHHHHHHHHHHhcCCC-E
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--------TDVTKFISGCMASLSAMVQLELP-H 184 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~--------~~~~~~i~~~l~~l~~~~~~~~p-~ 184 (284)
+.++.|+||||+...... +...+.. .+++++++|+... ......... .....+.| +
T Consensus 254 ~~~i~iiDTPGh~~f~~~------~~~~~~~---aD~alLVVDa~~g~~e~gi~~~~qt~e~l~------~~~~lgip~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG------MIAGASS---ADFAVLVVDSSQNNFERGFLENGQTREHAY------LLRALGISEI 318 (592)
T ss_dssp -----CCEEESSSEEEEE------CCC----------CCSEEEEEECCSSTTSCSCSSHHHHHH------HHHHSSCCCE
T ss_pred CeEEEEEECCChHHHHHH------HHHHHhh---CCEEEEEEECCCCccccccccchHHHHHHH------HHHHcCCCeE
Confidence 468899999998753221 1111222 3678889998642 111221211 22356777 8
Q ss_pred EEEecCCcccc-chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHH-hccCC----ceEEEEeccCcccHH----
Q 023298 185 VNILSKMDLVT-NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELV-DEYSM----VSFMPLDLRKESSIR---- 254 (284)
Q Consensus 185 IlVlNK~Dll~-~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l-~~~~~----~~~ipiSa~~~~~l~---- 254 (284)
|+|+||+|+.. .+..+.. ....+.+++ ...++ ..|+|+||++|.|+.
T Consensus 319 IvviNKiDl~~~~~~~~~~-----------------------i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~ 375 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQE-----------------------IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDS 375 (592)
T ss_dssp EEEEECGGGGTTCHHHHHH-----------------------HHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCC
T ss_pred EEEEeccccccccHHHHHH-----------------------HHHHHHHHHHHhhCCCccceEEEEEecccCcccccccc
Confidence 88999999875 2211111 112233444 44554 379999999999998
Q ss_pred ----------HHHHHHHHhcC
Q 023298 255 ----------YVLSQIDNCIQ 265 (284)
Q Consensus 255 ----------~Ll~~I~~~l~ 265 (284)
.|++.|...++
T Consensus 376 ~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 376 SDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CGGGGTCCSCCHHHHHHTSCC
T ss_pred cccccccchHHHHHHHHhhcc
Confidence 79999998876
No 183
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.11 E-value=1.2e-09 Score=110.68 Aligned_cols=206 Identities=12% Similarity=0.124 Sum_probs=106.3
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhH
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCME 95 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e 95 (284)
.+.+.+.|+|.+ +||||++.+|........+. -+.|++...+.|.. .+. +.+ +. +.+ .
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~---g~v~~~~~~~d~~~---~E~---------~~g--iT---i~~-~ 68 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKI---GEVHEGAATMDFME---QER---------ERG--IT---ITA-A 68 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC------------------------------------------------C-C
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCccc---ceecCCceeccCch---hhh---------hcc--cc---ccc-c
Confidence 456779999999 99999999998653221111 12344443333310 000 000 10 000 0
Q ss_pred hhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH-HHHHHHHH
Q 023298 96 HLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF-ISGCMASL 174 (284)
Q Consensus 96 ~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~-i~~~l~~l 174 (284)
... +. +.++++.++||||+... .....+.+.. .+.+++++|+......... ++
T Consensus 69 --~~~--------~~-~~~~~i~liDTPG~~df------~~~~~~~l~~---aD~~ilVvDa~~g~~~~t~~~~------ 122 (691)
T 1dar_A 69 --VTT--------CF-WKDHRINIIDTPGHVDF------TIEVERSMRV---LDGAIVVFDSSQGVEPQSETVW------ 122 (691)
T ss_dssp --EEE--------EE-ETTEEEEEECCCSSTTC------HHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHH------
T ss_pred --eEE--------EE-ECCeEEEEEECcCccch------HHHHHHHHHH---CCEEEEEEECCCCcchhhHHHH------
Confidence 000 11 11457899999998651 2223344544 3678999999765443322 21
Q ss_pred HHHHhcCCCEEEEecCCccccchh-----hhhhhcCc-------------------------------c----------h
Q 023298 175 SAMVQLELPHVNILSKMDLVTNKK-----EIEDYLNP-------------------------------E----------S 208 (284)
Q Consensus 175 ~~~~~~~~p~IlVlNK~Dll~~~~-----~l~~~l~~-------------------------------~----------~ 208 (284)
....+.++|.++|+||+|+..... ++.+.+.. + +
T Consensus 123 ~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~ 202 (691)
T 1dar_A 123 RQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIP 202 (691)
T ss_dssp HHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCC
T ss_pred HHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCC
Confidence 123356899999999999975320 11111100 0 0
Q ss_pred H-----------HHHHHhhhcchhH-----------HHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 209 Q-----------FLLSELNQHMAPQ-----------FAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 209 ~-----------~l~~~l~~~~~~~-----------~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
+ .+.+.+.+..... ...+...+.+.+....+..+++.||.++.|++.|++.|.+.+|.
T Consensus 203 ~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPs 282 (691)
T 1dar_A 203 EEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPS 282 (691)
T ss_dssp GGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHHHHHHHHhCCC
Confidence 0 1111111111100 11233444455555556788899999999999999999999987
Q ss_pred CCC
Q 023298 267 GED 269 (284)
Q Consensus 267 g~d 269 (284)
-.+
T Consensus 283 P~~ 285 (691)
T 1dar_A 283 PLD 285 (691)
T ss_dssp TTT
T ss_pred hhh
Confidence 554
No 184
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.11 E-value=2.9e-10 Score=110.67 Aligned_cols=112 Identities=12% Similarity=0.098 Sum_probs=68.9
Q ss_pred CCCEEEEeCCCCc-cccc-ccchH-HHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 114 DDDYLVFDCPGQI-ELFT-HVPVL-RNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~-e~~~-~~~~~-~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+.++.++||||+. +... ....+ .+....+.. .+++++++|+....+.... .++ ..+ .++|+|+|+||
T Consensus 290 g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~---aD~vl~VvD~s~~~s~~~~--~il---~~l--~~~piivV~NK 359 (482)
T 1xzp_A 290 GILFRIVDTAGVRSETNDLVERLGIERTLQEIEK---ADIVLFVLDASSPLDEEDR--KIL---ERI--KNKRYLVVINK 359 (482)
T ss_dssp TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH---CSEEEEEEETTSCCCHHHH--HHH---HHH--TTSSEEEEEEE
T ss_pred CeEEEEEECCCccccchhhHHHHHHHHHHHHhhc---ccEEEEEecCCCCCCHHHH--HHH---HHh--cCCCEEEEEEC
Confidence 3468999999987 4211 01111 223344544 3689999998765443332 111 111 37899999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
+|+.... ...++ .+... ....++++||++|+|+++|++.|.+.+.
T Consensus 360 ~DL~~~~-~~~~~---------------------------~~~~~--~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 360 VDVVEKI-NEEEI---------------------------KNKLG--TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp CSSCCCC-CHHHH---------------------------HHHHT--CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred ccccccc-CHHHH---------------------------HHHhc--CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 9986421 11111 01111 1257899999999999999999998754
No 185
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.10 E-value=9e-10 Score=103.76 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCE-EEEec-CC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPH-VNILS-KM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~-IlVlN-K~ 191 (284)
+.++.++||||+.. ....+...+.. .+++++++| .....+... .. +......+.|. |+|+| |+
T Consensus 59 ~~~i~iiDtPGh~~------f~~~~~~~~~~---aD~ailVvd-~~g~~~qt~--e~---~~~~~~~~i~~~ivvvNNK~ 123 (370)
T 2elf_A 59 GRNMVFVDAHSYPK------TLKSLITALNI---SDIAVLCIP-PQGLDAHTG--EC---IIALDLLGFKHGIIALTRSD 123 (370)
T ss_dssp SSEEEEEECTTTTT------CHHHHHHHHHT---CSEEEEEEC-TTCCCHHHH--HH---HHHHHHTTCCEEEEEECCGG
T ss_pred CeEEEEEECCChHH------HHHHHHHHHHH---CCEEEEEEc-CCCCcHHHH--HH---HHHHHHcCCCeEEEEEEecc
Confidence 45799999999754 12334444543 468899999 533333221 11 11223567898 99999 99
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC--CceEEE--EeccC---cccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--MVSFMP--LDLRK---ESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~--~~~~ip--iSa~~---~~~l~~Ll~~I~~~l 264 (284)
|+ ..+ .+.... ..+.+++..++ ...++| +||++ ++|+++|++.|.+.+
T Consensus 124 Dl-~~~-~~~~~~-----------------------~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 124 ST-HMH-AIDELK-----------------------AKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp GS-CHH-HHHHHH-----------------------HHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred CC-CHH-HHHHHH-----------------------HHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 98 432 222111 11223344443 368999 99999 999999999999887
Q ss_pred CC
Q 023298 265 QW 266 (284)
Q Consensus 265 ~~ 266 (284)
+.
T Consensus 179 ~~ 180 (370)
T 2elf_A 179 EK 180 (370)
T ss_dssp HH
T ss_pred cc
Confidence 64
No 186
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.10 E-value=7.5e-10 Score=102.42 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=40.3
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
..++.+++|+|++ |||||++.+||.+++..|++|+++|.|++..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~ 146 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA 146 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 3567889999999 9999999999999999999999999999764
No 187
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.69 E-value=9.1e-12 Score=105.86 Aligned_cols=124 Identities=10% Similarity=0.124 Sum_probs=66.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..+.++||||+.... .+.. .+.. .+++++++|+....+.......++..+.... .+.|+++|.||+|+
T Consensus 78 ~~l~i~Dt~G~~~~~-------~~~~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl 146 (204)
T 3th5_A 78 VNLGLWDTAGQEDYD-------RLRPLSYPQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDL 146 (204)
Confidence 356699999975421 1111 1222 3578889998643222221112222111111 17899999999999
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
.... ...+..... . ...+. .....++...++...++++||++|.|++++++.|.+.
T Consensus 147 ~~~~-~~~~~~~~~--~-~~~v~----------~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 147 RDDK-DTIEKLKEK--K-LTPIT----------YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 7543 221111100 0 00000 0011222234444578999999999999999988654
No 188
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.09 E-value=3.4e-11 Score=102.02 Aligned_cols=115 Identities=12% Similarity=0.142 Sum_probs=62.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
..+.++||||+........ ..+ ...+++++++|+....+. ..+..++..+......+.|+++|+||+|+.
T Consensus 82 ~~~~i~Dt~G~~~~~~~~~------~~~---~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 151 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTITS------SYY---RGAHGIIVVYDVTDQESF-NNVKQWLQEIDRYASENVNKLLVGNKCDLT 151 (199)
T ss_dssp EEEEEECCTTCTTCCCCSC------C-----CCCSEEEECC-CCCSHHH-HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred EEEEEEECCCcHhHHHHHH------HHh---hcCCEEEEEEECCCHHHH-HHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence 3689999999765321111 012 224689999998643211 113334333333333478999999999996
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
..+ ....... .++...++ ..++++||++|.|++++++.|.+.+..
T Consensus 152 ~~~-~v~~~~~-------------------------~~~~~~~~-~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 152 TKK-VVDYTTA-------------------------KEFADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp --C-CCCSCC--------------------------CHHHHTTT-CCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred ccc-cCCHHHH-------------------------HHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 533 2211000 01112233 578999999999999999999877643
No 189
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=7.2e-10 Score=106.07 Aligned_cols=121 Identities=16% Similarity=0.269 Sum_probs=77.7
Q ss_pred CCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~--~~~~p~IlVlNK~ 191 (284)
..+.+.||||+++... ...+...+.++++. ...+++++|.. .++-..++.....+..+. ....|.++|+||+
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~er---a~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKl 279 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIAR---TRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 279 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTS---SSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECC
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHH---HHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECC
Confidence 4689999999876321 22233344455533 35789999986 444444555444433332 1368999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGED 269 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d 269 (284)
|+.... .+..+ .+.+...+ ..++++||++++|+++|++.|.+.+...+.
T Consensus 280 Dl~~~~-~~~~l---------------------------~~~l~~~g-~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 280 DLLEEE-AVKAL---------------------------ADALAREG-LAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp TTSCHH-HHHHH---------------------------HHHHHTTT-SCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred ChhhHH-HHHHH---------------------------HHHHHhcC-CeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 986432 22111 11122222 579999999999999999999998876554
No 190
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.07 E-value=4.8e-09 Score=101.29 Aligned_cols=109 Identities=15% Similarity=0.262 Sum_probs=60.0
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCC-EEEEecC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELP-HVNILSK 190 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p-~IlVlNK 190 (284)
+.++.|+||||+.. ....+ .......+++++++|+.....+..| .......+......+.| .|+|+||
T Consensus 84 ~~~~~iiDtPGh~~------f~~~~---~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK 154 (458)
T 1f60_A 84 KYQVTVIDAPGHRD------FIKNM---ITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 154 (458)
T ss_dssp SEEEEEEECCCCTT------HHHHH---HHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CceEEEEECCCcHH------HHHHH---HhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 45799999999643 11222 2223345789999999632111000 00000111122345776 8899999
Q ss_pred Ccccc-chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcccHH
Q 023298 191 MDLVT-NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR 254 (284)
Q Consensus 191 ~Dll~-~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~l~ 254 (284)
+|+.. ++..+.... ..+.+++..+++ ..++|+||++|+|+.
T Consensus 155 ~Dl~~~~~~~~~~i~-----------------------~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 155 MDSVKWDESRFQEIV-----------------------KETSNFIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp GGGGTTCHHHHHHHH-----------------------HHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred cccccCCHHHHHHHH-----------------------HHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence 99973 221221111 122333444454 679999999999986
No 191
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.06 E-value=2.3e-09 Score=113.28 Aligned_cols=115 Identities=18% Similarity=0.251 Sum_probs=71.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH-HHHHHHHHHHHHhcCCC-EEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF-ISGCMASLSAMVQLELP-HVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~-i~~~l~~l~~~~~~~~p-~IlVlNK~ 191 (284)
..++.|+||||+... ...+ .......+++++++|+.....+... ... .+...+.| .|+|+||+
T Consensus 358 ~~kI~IIDTPGHedF------~~~m---i~gas~AD~aILVVDAtdGv~~QTrEhL~------ll~~lgIP~IIVVINKi 422 (1289)
T 3avx_A 358 TRHYAHVDCPGHADY------VKNM---ITGAAQMDGAILVVAATDGPMPQTREHIL------LGRQVGVPYIIVFLNKC 422 (1289)
T ss_dssp SCEEEEEECCCHHHH------HHHH---HHTSCCCSEEEEEEETTTCSCTTHHHHHH------HHHHHTCSCEEEEEECC
T ss_pred CEEEEEEECCChHHH------HHHH---HHHHhhCCEEEEEEcCCccCcHHHHHHHH------HHHHcCCCeEEEEEeec
Confidence 467999999996541 1112 2223345789999999754322221 111 12245789 68999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCc--------ccHHHHHHH
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKE--------SSIRYVLSQ 259 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~--------~~l~~Ll~~ 259 (284)
|+..++ +..+.. ...+.+++..+++ ..++|+||++| .|+..|++.
T Consensus 423 DLv~d~-e~le~i----------------------~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLlea 479 (1289)
T 3avx_A 423 DMVDDE-ELLELV----------------------EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGF 479 (1289)
T ss_dssp TTCCCH-HHHHHH----------------------HHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHH
T ss_pred ccccch-hhHHHH----------------------HHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhH
Confidence 997533 211111 1122334444443 68999999999 679999999
Q ss_pred HHHhcCC
Q 023298 260 IDNCIQW 266 (284)
Q Consensus 260 I~~~l~~ 266 (284)
|.+.++.
T Consensus 480 L~~~Ip~ 486 (1289)
T 3avx_A 480 LDSYIPE 486 (1289)
T ss_dssp HHHTSCC
T ss_pred HhhhcCC
Confidence 9998874
No 192
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.06 E-value=2.5e-09 Score=90.79 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=70.5
Q ss_pred CEEEEeCCCCccccccc---chHHHHH-HHHHhcCCCeEEEEEecCCCCCCHHH-HHHHHHHHHHHHHhcCCCEEEEecC
Q 023298 116 DYLVFDCPGQIELFTHV---PVLRNFV-DHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNILSK 190 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~---~~~~~l~-~~l~~~d~~~vil~LiDa~~~~~~~~-~i~~~l~~l~~~~~~~~p~IlVlNK 190 (284)
+..++||||+....... ......+ ..++.....+.+++++|+....+... .+.. .+...+.|.++|.||
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~------~~~~~~~~~~~v~nK 146 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIE------WAVDSNIAVLVLLTK 146 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH------HHHHTTCCEEEEEEC
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHH------HHHHcCCCeEEEEec
Confidence 67899999975311000 0111122 22332223466788899865433221 1221 233568999999999
Q ss_pred CccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 191 MDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 191 ~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
+|+++.. +..... ..+...+.+.+ ...++|+||+++.|++++++.|.+.++.|+
T Consensus 147 ~D~~s~~-~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 147 ADKLASG-ARKAQL-----------------------NMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp GGGSCHH-HHHHHH-----------------------HHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred ccCCCch-hHHHHH-----------------------HHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 9987643 211100 01123334444 467899999999999999999999988764
No 193
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.06 E-value=1.5e-09 Score=92.87 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCC-CCCCHHHHHHHHHHHHHHH----HhcCCCEEEEe
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ-FITDVTKFISGCMASLSAM----VQLELPHVNIL 188 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~-~~~~~~~~i~~~l~~l~~~----~~~~~p~IlVl 188 (284)
...+.++||||+... +.......+. .....+++++++|+. ...+-.. +..++..+... ...+.|+++|+
T Consensus 54 ~~~~~l~Dt~G~~~~---~~~~~~~~~~--~~~~~~~~i~v~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~ 127 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKL---RYKLSDYLKT--RAKFVKGLIFMVDSTVDPKKLTT-TAEFLVDILSITESSCENGIDILIAC 127 (218)
T ss_dssp GSSCEEEECCCCGGG---THHHHHHHHH--HGGGEEEEEEEEETTSCTTCCHH-HHHHHHHHHHHHHHHSTTCCCEEEEE
T ss_pred CceEEEEECCCcHHH---HHHHHHHHHh--ccccCCEEEEEEECCCChHHHHH-HHHHHHHHHhcccccccCCCCEEEEE
Confidence 347899999998542 1222222211 111236789999997 3322222 12222222111 22579999999
Q ss_pred cCCccccch
Q 023298 189 SKMDLVTNK 197 (284)
Q Consensus 189 NK~Dll~~~ 197 (284)
||+|+....
T Consensus 128 nK~Dl~~~~ 136 (218)
T 1nrj_B 128 NKSELFTAR 136 (218)
T ss_dssp ECTTSTTCC
T ss_pred EchHhcccC
Confidence 999997644
No 194
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.06 E-value=2.1e-09 Score=108.90 Aligned_cols=141 Identities=14% Similarity=0.210 Sum_probs=83.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHH-HHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~-~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
+.++.++||||+.... ....+.+.. .+.+++++|+....+... .++. .+.+.+.|.++|+||+|
T Consensus 74 ~~~i~liDTPG~~df~------~~~~~~l~~---aD~~llVvDa~~g~~~~~~~~~~------~~~~~~~p~ilviNK~D 138 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFT------VEVERSLRV---LDGAVTVLDAQSGVEPQTETVWR------QATTYGVPRIVFVNKMD 138 (693)
T ss_dssp TEEEEEECCCCCSSCC------HHHHHHHHH---CSEEEEEEETTTBSCHHHHHHHH------HHHHTTCCEEEEEECTT
T ss_pred CeeEEEEECcCCcchH------HHHHHHHHH---CCEEEEEECCCCCCcHHHHHHHH------HHHHcCCCEEEEEECCC
Confidence 4578999999986521 123344544 368999999976433332 2221 23456899999999999
Q ss_pred cccchh-----hhhhhcCc-------------------------------c----------hH-----------HHHHHh
Q 023298 193 LVTNKK-----EIEDYLNP-------------------------------E----------SQ-----------FLLSEL 215 (284)
Q Consensus 193 ll~~~~-----~l~~~l~~-------------------------------~----------~~-----------~l~~~l 215 (284)
+...+. ++...+.. + ++ .+++.+
T Consensus 139 l~~~~~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l 218 (693)
T 2xex_A 139 KLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAV 218 (693)
T ss_dssp STTCCHHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHH
Confidence 975320 11111100 0 00 111111
Q ss_pred hhcchh-----------HHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCC
Q 023298 216 NQHMAP-----------QFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGED 269 (284)
Q Consensus 216 ~~~~~~-----------~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d 269 (284)
.+.... ....+...+.+.+....+..++..||.++.|++.|++.|.+.+|.-.+
T Consensus 219 ~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~ 283 (693)
T 2xex_A 219 AETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLD 283 (693)
T ss_dssp HTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGG
T ss_pred hhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHHHHHHHHHCCCchh
Confidence 111100 011233444555555566788999999999999999999999986543
No 195
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.06 E-value=8.2e-10 Score=100.86 Aligned_cols=152 Identities=13% Similarity=0.011 Sum_probs=83.4
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcC--cccCchhhhhh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELG--LGPNGGLIYCM 94 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~--lgPng~l~~~~ 94 (284)
++.++.++|++ |||||++.+||.+++..|.+|+++|.|++.....+ .+ ....+..+ +.|.+.-....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~-------ql---~~~~~~~~l~~~~~~~~~~p~ 166 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE-------QL---RLLGEKVGVPVLEVMDGESPE 166 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH-------HH---HHHHHHHTCCEEECCTTCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH-------HH---HHhcccCCeEEEEcCCCCCHH
Confidence 56778899999 99999999999999999999999999998753211 00 01112222 22222110111
Q ss_pred HhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q 023298 95 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 174 (284)
Q Consensus 95 e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l 174 (284)
+.+. ..+..... . ++++|||||||.... .......+........ .+-+++++|+.. ..+.+.. .
T Consensus 167 ~l~~----~~l~~~~~-~-~~D~viiDtpp~~~~--d~~~~~~l~~~~~~~~-~~~~~lv~~~~~---~~~~~~~----~ 230 (295)
T 1ls1_A 167 SIRR----RVEEKARL-E-ARDLILVDTAGRLQI--DEPLMGELARLKEVLG-PDEVLLVLDAMT---GQEALSV----A 230 (295)
T ss_dssp HHHH----HHHHHHHH-H-TCCEEEEECCCCSSC--CHHHHHHHHHHHHHHC-CSEEEEEEEGGG---THHHHHH----H
T ss_pred HHHH----HHHHHHHh-C-CCCEEEEeCCCCccc--cHHHHHHHHHHhhhcC-CCEEEEEEeCCC---cHHHHHH----H
Confidence 1111 11222211 1 679999999997753 1122333333222211 345678888752 2222221 1
Q ss_pred HHHHhcCCCEEEEecCCcccc
Q 023298 175 SAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 175 ~~~~~~~~p~IlVlNK~Dll~ 195 (284)
..+...-...-+|+||+|...
T Consensus 231 ~~~~~~~~i~givlnk~d~~~ 251 (295)
T 1ls1_A 231 RAFDEKVGVTGLVLTKLDGDA 251 (295)
T ss_dssp HHHHHHTCCCEEEEECGGGCS
T ss_pred HHHhhcCCCCEEEEECCCCCc
Confidence 112211123557899999753
No 196
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.06 E-value=2.7e-09 Score=101.34 Aligned_cols=115 Identities=11% Similarity=0.192 Sum_probs=70.4
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcC-CCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLE-LPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~-~p~IlVlNK~D 192 (284)
..+.|+||||+.. ....+...+ ...+++++++|+.... .+...-. +. .+..++ .|.|+|+||+|
T Consensus 83 ~~i~iiDtPGh~~------f~~~~~~~~---~~~D~~ilVvda~~g~~~~qt~e~--l~---~~~~~~~~~iivviNK~D 148 (410)
T 1kk1_A 83 RRVSFIDAPGHEA------LMTTMLAGA---SLMDGAILVIAANEPCPRPQTREH--LM---ALQIIGQKNIIIAQNKIE 148 (410)
T ss_dssp EEEEEEECSSHHH------HHHHHHHCG---GGCSEEEEEEETTSCSSCHHHHHH--HH---HHHHHTCCCEEEEEECGG
T ss_pred cEEEEEECCChHH------HHHHHHhhh---hhCCEEEEEEECCCCCCChhHHHH--HH---HHHHcCCCcEEEEEECcc
Confidence 4689999999532 122222222 2347899999997542 4433211 11 111233 47899999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
+.... ...... ..+.+++..+ ....++|+||++|+|++.|++.|.+.++..
T Consensus 149 l~~~~-~~~~~~-----------------------~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 149 LVDKE-KALENY-----------------------RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp GSCHH-HHHHHH-----------------------HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCCHH-HHHHHH-----------------------HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 97643 221111 1112333332 236899999999999999999999987753
No 197
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.05 E-value=1.5e-09 Score=109.97 Aligned_cols=129 Identities=9% Similarity=0.089 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
.++.++||||+.+...+ .......+.. .++++|++|+....+..+. ..+. ..+...+.|+++|+||+|+.
T Consensus 174 ~~l~LiDTPGl~~~~~~---~~~~~~~i~~---aD~vL~Vvda~~~~s~~e~-~~l~---~~l~~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEAR---NELSLGYVNN---CHAILFVMRASQPCTLGER-RYLE---NYIKGRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TTEEEEECCCHHHHHTC---HHHHTHHHHS---SSEEEEEEETTSTTCHHHH-HHHH---HHTTTSCCCEEEEEECGGGG
T ss_pred CCeEEEECCCCCchhhH---HHHHHHHHHh---CCEEEEEEeCCCccchhHH-HHHH---HHHHhhCCCEEEEEECcccc
Confidence 47999999997653211 2222334443 4689999999765444332 1110 11234578999999999987
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--------CCceEEEEecc--------------Cccc
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--------SMVSFMPLDLR--------------KESS 252 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--------~~~~~ipiSa~--------------~~~~ 252 (284)
.+. .+.. .+.+.+.+ .. ..+...+...+..+ ....++|+||+ ++.|
T Consensus 244 ~~~-~~~~---ee~e~l~~-~~-------~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~G 311 (695)
T 2j69_A 244 RES-LIDP---DDVEELQA-SE-------NRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTG 311 (695)
T ss_dssp GGG-CSST---TCHHHHHH-HH-------HHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSS
T ss_pred ccc-ccCh---hhHHHHHH-HH-------HHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccC
Confidence 532 1100 00000000 00 00111111112211 12469999999 9999
Q ss_pred HHHHHHHHHHhcC
Q 023298 253 IRYVLSQIDNCIQ 265 (284)
Q Consensus 253 l~~Ll~~I~~~l~ 265 (284)
+++|.+.+.+.+.
T Consensus 312 i~~L~~~L~~~l~ 324 (695)
T 2j69_A 312 FPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
No 198
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.05 E-value=6.5e-09 Score=98.66 Aligned_cols=113 Identities=18% Similarity=0.250 Sum_probs=64.6
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHH-HhcCCCeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcC-CCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHL-KSRNFNVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLE-LPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l-~~~d~~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~-~p~IlVlNK~ 191 (284)
..+.|+||||+.. +.+.+ ..+...+++++++|+.... .+..+- .+. .+..++ .|.|+|+||+
T Consensus 81 ~~i~iiDtPGh~~----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e--~l~---~~~~l~~~~iivv~NK~ 145 (408)
T 1s0u_A 81 RRVSFVDSPGHET----------LMATMLSGASLMDGAILVIAANEPCPQPQTKE--HLM---ALEILGIDKIIIVQNKI 145 (408)
T ss_dssp EEEEEEECSSHHH----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH--HHH---HHHHTTCCCEEEEEECT
T ss_pred cEEEEEECCCHHH----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHH--HHH---HHHHcCCCeEEEEEEcc
Confidence 4789999999532 22222 2333457899999997542 443321 111 112233 4799999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc--CCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY--SMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~--~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
|+...+ ......+ .+.+++..+ ....++|+||++|+|++.|++.|.+.++.
T Consensus 146 Dl~~~~-~~~~~~~-----------------------~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 146 DLVDEK-QAEENYE-----------------------QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TSSCTT-TTTTHHH-----------------------HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred CCCCHH-HHHHHHH-----------------------HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 997643 2211110 112233332 23679999999999999999999998775
No 199
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.04 E-value=3.5e-09 Score=105.62 Aligned_cols=111 Identities=15% Similarity=0.224 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
+.+.++||||+... ...+.+.+.. .+.+++++|+....++... ..+. .....+.|.|+|+||+|+.
T Consensus 73 ~~inliDTPGh~dF------~~ev~r~l~~---aD~aILVVDa~~gv~~qt~-~~~~----~a~~~~ipiIvviNKiDl~ 138 (600)
T 2ywe_A 73 YKLHLIDTPGHVDF------SYEVSRALAA---CEGALLLIDASQGIEAQTV-ANFW----KAVEQDLVIIPVINKIDLP 138 (600)
T ss_dssp EEEEEECCCCSGGG------HHHHHHHHHT---CSEEEEEEETTTBCCHHHH-HHHH----HHHHTTCEEEEEEECTTST
T ss_pred EEEEEEECCCcHhH------HHHHHHHHHh---CCEEEEEEECCCCccHHHH-HHHH----HHHHCCCCEEEEEeccCcc
Confidence 46789999998651 2234455654 3678999999765444432 1111 1235689999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC--ceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~--~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
... ..+.. + ++.+.+++ ..++++||++|.|+++|++.|.+.+|.-
T Consensus 139 ~a~--~~~v~--------~------------------el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 139 SAD--VDRVK--------K------------------QIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp TCC--HHHHH--------H------------------HHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ccC--HHHHH--------H------------------HHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 432 11111 1 11122333 3599999999999999999999998753
No 200
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.04 E-value=8.2e-10 Score=100.12 Aligned_cols=126 Identities=11% Similarity=0.111 Sum_probs=69.1
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
.+.++||||+...... ... .....+++++++|+....+.......++..+.... .+.|+++|.||+|+..
T Consensus 204 ~~~l~Dt~G~~~~~~~-------~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 204 NLGLWDTAGLEDYDRL-------RPL--SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 273 (332)
T ss_dssp EEEEEEECCCGGGTTT-------GGG--GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHT
T ss_pred EEEEEeCCCchhhhHH-------HHH--hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhccc
Confidence 5669999997542211 010 12234689999998632221111112222222221 2789999999999975
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.......+.+.. ... .. .....++...++...++++||++|.|++++++.|.+.+.
T Consensus 274 ~~~~~~~~~~~~-------~~~-v~------~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 274 DKDTIEKLKEKK-------LTP-IT------YPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp CHHHHHHHHHTT-------CCC-CC------HHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchhhhccccc-------ccc-cc------HHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 431111111000 000 00 001123334556668999999999999999999887653
No 201
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.04 E-value=6.7e-10 Score=109.46 Aligned_cols=117 Identities=11% Similarity=0.124 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+..+.|+||||+........ ......+++++++|+.....+... ..+......+.|+|+|+||+|+
T Consensus 51 g~~i~~iDTPGhe~f~~~~~---------~~~~~aD~vILVVDa~dg~~~qt~-----e~l~~~~~~~vPiIVViNKiDl 116 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRA---------RGTQVTDIVILVVAADDGVMKQTV-----ESIQHAKDAHVPIVLAINKCDK 116 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBB---------SSSBSBSSCEEECBSSSCCCHHHH-----HHHHHHHTTTCCEEECCBSGGG
T ss_pred CCEEEEEECCChHHHHHHHH---------HHHccCCEEEEEEECCCCccHHHH-----HHHHHHHHcCCcEEEEEecccc
Confidence 34688999999654221111 112234678899999765444432 1122334578999999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
.... ...... .+.. .. ...+.++ ...++|+||++|.|+++|++.|...++.
T Consensus 117 ~~~~--~~~v~~----~l~~-~~---------------~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 117 AEAD--PEKVKK----ELLA-YD---------------VVCEDYGGDVQAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp TTTS--CCSSSS----HHHH-TT---------------SCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred cccc--hHHHHH----HHHh-hh---------------hhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhc
Confidence 6422 111111 0000 00 0012333 3689999999999999999999988764
No 202
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.03 E-value=5.6e-10 Score=109.83 Aligned_cols=137 Identities=12% Similarity=0.180 Sum_probs=67.2
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC-CCCCccccccccccHHHHhhhcCcccCchhhhhh
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN-FDYPVAMDIRELISLEDVMEELGLGPNGGLIYCM 94 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~-~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~ 94 (284)
.+.+.++|+|.+ +||||++.+|..+....++...+.+-+++... ..|. +.+ ...|+. +.+.
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~---~~E---------~~rGiT-----i~~~ 73 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWM---EME---------KQRGIS-----ITTS 73 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC------------------------------------------------CCTT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccc---hhc---------ccCCcc-----eeee
Confidence 456779999999 99999999998743322333334444444322 1110 000 000100 0000
Q ss_pred HhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHH
Q 023298 95 EHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASL 174 (284)
Q Consensus 95 e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l 174 (284)
.. .+. +.++++.++||||+.... ..+.+.+.. .+.+++++|+.....+... .+ +
T Consensus 74 ---~~--------~~~-~~~~~i~liDTPG~~df~------~~~~~~l~~---aD~~IlVvDa~~g~~~~t~--~~---~ 127 (529)
T 2h5e_A 74 ---VM--------QFP-YHDCLVNLLDTPGHEDFS------EDTYRTLTA---VDCCLMVIDAAKGVEDRTR--KL---M 127 (529)
T ss_dssp ---EE--------EEE-ETTEEEEEECCCCSTTCC------HHHHHGGGG---CSEEEEEEETTTCSCHHHH--HH---H
T ss_pred ---EE--------EEE-ECCeEEEEEECCCChhHH------HHHHHHHHH---CCEEEEEEeCCccchHHHH--HH---H
Confidence 00 011 114578999999985411 122333433 4689999999754333221 11 1
Q ss_pred HHHHhcCCCEEEEecCCccccc
Q 023298 175 SAMVQLELPHVNILSKMDLVTN 196 (284)
Q Consensus 175 ~~~~~~~~p~IlVlNK~Dll~~ 196 (284)
......+.|.++|+||+|+...
T Consensus 128 ~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 128 EVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp HHHTTTTCCEEEEEECTTSCCS
T ss_pred HHHHHcCCCEEEEEcCcCCccc
Confidence 2233468999999999999753
No 203
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.03 E-value=5.4e-09 Score=106.11 Aligned_cols=137 Identities=10% Similarity=0.095 Sum_probs=74.1
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHH---hcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhh
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCE---TVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLI 91 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~---~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~ 91 (284)
....+.++|+|.+ +||||++.+|..... +.| +.|+|...+.|.+ .+ .+.+..-.....
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g------~v~~g~~~~D~~~---~E---------~~rgiTi~~~~~ 68 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG------EVHDGAATMDWME---QE---------QERGITITSAAT 68 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc------ccCCCceeecChh---hH---------HhcCceeeeceE
Confidence 3456779999999 999999999976422 222 3456554433321 00 000100000000
Q ss_pred hhhHhhhhcHHHHHHHHhhccCCCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHH-HHHHH
Q 023298 92 YCMEHLEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK-FISGC 170 (284)
Q Consensus 92 ~~~e~~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~-~i~~~ 170 (284)
.+.+ .+. .... ..+++.||||||+... .....+.+.. .+.+++++|+.....+.. .++
T Consensus 69 -~~~~--~~~------~~~~-~~~~i~liDTPG~~df------~~~~~~~l~~---aD~aIlVvDa~~gv~~qt~~~~-- 127 (704)
T 2rdo_7 69 -TAFW--SGM------AKQY-EPHRINIIDTPGHVDF------TIEVERSMRV---LDGAVMVYCAVGGVQPQSETVW-- 127 (704)
T ss_pred -EEEE--CCc------cccC-CceeEEEEeCCCccch------HHHHHHHHHH---CCEEEEEEeCCCCCcHHHHHHH--
Confidence 0000 000 0011 1468999999997641 1223344544 367899999975433222 121
Q ss_pred HHHHHHHHhcCCCEEEEecCCcccc
Q 023298 171 MASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 171 l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
......+.|.++|+||+|+..
T Consensus 128 ----~~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 128 ----RQANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred ----HHHHHcCCCEEEEEeCCCccc
Confidence 223356899999999999864
No 204
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.03 E-value=2.5e-09 Score=106.66 Aligned_cols=112 Identities=16% Similarity=0.252 Sum_probs=71.7
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLV 194 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll 194 (284)
+.+.++||||+.. ....+.+.+..+ +.+++++|+....++... ..+. .....++|.|+|+||+|+.
T Consensus 71 ~~l~liDTPGh~d------F~~ev~~~l~~a---D~aILVVDa~~gv~~qt~-~~~~----~~~~~~ipiIvViNKiDl~ 136 (599)
T 3cb4_D 71 YQLNFIDTPGHVD------FSYEVSRSLAAC---EGALLVVDAGQGVEAQTL-ANCY----TAMEMDLEVVPVLNKIDLP 136 (599)
T ss_dssp EEEEEEECCCCGG------GHHHHHHHHHHC---SEEEEEEETTTCCCTHHH-HHHH----HHHHTTCEEEEEEECTTST
T ss_pred EEEEEEECCCchH------HHHHHHHHHHHC---CEEEEEEECCCCCCHHHH-HHHH----HHHHCCCCEEEeeeccCcc
Confidence 4678999999754 123344556553 578999999765333332 1111 1235689999999999986
Q ss_pred cchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCC
Q 023298 195 TNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQW 266 (284)
Q Consensus 195 ~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~ 266 (284)
... ..+.. + .+.+.+ ......++++||++|.|+++|++.|.+.+|.
T Consensus 137 ~a~--~~~v~--------~---------------ei~~~l-g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 137 AAD--PERVA--------E---------------EIEDIV-GIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp TCC--HHHHH--------H---------------HHHHHT-CCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred ccc--HHHHH--------H---------------HHHHHh-CCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 532 11111 1 111111 1122468999999999999999999999875
No 205
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.02 E-value=9.3e-09 Score=98.42 Aligned_cols=105 Identities=17% Similarity=0.298 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC-CEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLEL-PHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~-p~IlVlNK~D 192 (284)
+.++.++||||+.. | ...+...+.. .+++++++|+.....+... ..+. .....+. |.|+|+||+|
T Consensus 103 ~~~~~iiDtpGh~~-f-----~~~~~~~~~~---aD~~ilVvDa~~g~~~qt~--~~l~---~~~~~~~~~iIvviNK~D 168 (434)
T 1zun_B 103 KRKFIIADTPGHEQ-Y-----TRNMATGAST---CDLAIILVDARYGVQTQTR--RHSY---IASLLGIKHIVVAINKMD 168 (434)
T ss_dssp SEEEEEEECCCSGG-G-----HHHHHHHHTT---CSEEEEEEETTTCSCHHHH--HHHH---HHHHTTCCEEEEEEECTT
T ss_pred CceEEEEECCChHH-H-----HHHHHHHHhh---CCEEEEEEECCCCCcHHHH--HHHH---HHHHcCCCeEEEEEEcCc
Confidence 44689999999643 1 2334444433 4689999999754333322 1111 1223455 5899999999
Q ss_pred cccc-hhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC--C--ceEEEEeccCcccHHH
Q 023298 193 LVTN-KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS--M--VSFMPLDLRKESSIRY 255 (284)
Q Consensus 193 ll~~-~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~--~--~~~ipiSa~~~~~l~~ 255 (284)
+... +..+... ...+.+++..++ + ..++|+||++|+|+.+
T Consensus 169 l~~~~~~~~~~i-----------------------~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 169 LNGFDERVFESI-----------------------KADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TTTSCHHHHHHH-----------------------HHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred CCcccHHHHHHH-----------------------HHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 9752 1011111 112234445555 3 6799999999999987
No 206
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.02 E-value=2.2e-09 Score=93.23 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=63.2
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK~ 191 (284)
.+++++||+|+... .+.+.... ....+++++++|.. +...| +..+...+.... ..+.|+|+|.||+
T Consensus 87 ~~l~~~Dt~g~~~~-------~~~l~~~~-~~~a~~~ilVydvt---~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~ 155 (211)
T 2g3y_A 87 ATIILLDMWENKGE-------NEWLHDHC-MQVGDAYLIVYSIT---DRASFEKASELRIQLRRARQTEDIPIILVGNKS 155 (211)
T ss_dssp EEEEEECCTTTTHH-------HHHHHHCC-CCCCSEEEEEEETT---CHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECT
T ss_pred eEEEEeecCCCcch-------hhhHHHHH-HhhCCEEEEEEECC---CHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECh
Confidence 35689999996541 11122111 11234667777764 33333 222322222111 2378999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
|+...+ .+..-. . ..+...++ ..++++||++|+|++++++.|.+.+.
T Consensus 156 DL~~~r-~v~~~e------------------~-------~~~a~~~~-~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 156 DLVRCR-EVSVSE------------------G-------RACAVVFD-CKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TCGGGC-CSCHHH------------------H-------HHHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHhcCc-eEeHHH------------------H-------HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 986432 211000 0 00111223 47999999999999999999887653
No 207
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.02 E-value=2.4e-09 Score=97.89 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=68.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHH--hcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMV--QLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~--~~~~p~IlVlNK~ 191 (284)
+.++.++||||+.... ......+....- ...+++++++|+....+... +..+...+..+. ..+.|+++|+||+
T Consensus 51 ~~~l~i~Dt~G~~~~~--~~~~~~~~~~~~--~~ad~vi~V~D~t~~~s~~~-l~~~~~~l~~l~~~~~~~piilv~NK~ 125 (307)
T 3r7w_A 51 NMTLNLWDCGGQDVFM--ENYFTKQKDHIF--QMVQVLIHVFDVESTEVLKD-IEIFAKALKQLRKYSPDAKIFVLLHKM 125 (307)
T ss_dssp TEEEEEEEECCSHHHH--HHHHTTTHHHHH--TTCSEEEEEEETTCSCHHHH-HHHHHHHHHHHHHHCTTCEEEEEEECG
T ss_pred ceEEEEEECCCcHHHh--hhhhhhHHHHHh--ccCCEEEEEEECCChhhHHH-HHHHHHHHHHHHHhCCCCeEEEEEecc
Confidence 3468999999975421 000011112111 12468999999975543222 222222222222 2378999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC--ceEEEEeccCcccHHHHHHHH-HHhcCCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQI-DNCIQWG 267 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~--~~~ipiSa~~~~~l~~Ll~~I-~~~l~~g 267 (284)
|+.... ......+ .....+.++...+++ ..++++||++ .++.+++..+ .+.++..
T Consensus 126 Dl~~~~-~r~~~~~-------------------v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 126 DLVQLD-KREELFQ-------------------IMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp GGSCHH-HHHHHHH-------------------HHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred cccchh-hhhHHHH-------------------HHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence 997622 1111100 001122344466675 7999999999 6666655544 4444443
No 208
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.01 E-value=8.9e-10 Score=108.10 Aligned_cols=115 Identities=13% Similarity=0.192 Sum_probs=66.4
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..++.++||||+.+... ....+ +.. .+++++++|++...+.. .++..+... ..+.|+|+|.||+|+
T Consensus 97 ~~~~~i~Dt~G~e~~~~---~~~~~---l~~---~d~ii~V~D~s~~~~~~----~~~~~l~~~-~~~~pvilV~NK~Dl 162 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHA---SHQFF---MTR---SSVYMLLLDSRTDSNKH----YWLRHIEKY-GGKSPVIVVMNKIDE 162 (535)
T ss_dssp TCEEEEECCCSCCTTTT---TCHHH---HHS---SEEEEEEECGGGGGGHH----HHHHHHHHH-SSSCCEEEEECCTTT
T ss_pred eEEEEEEECCcHHHHHH---HHHHH---ccC---CcEEEEEEeCCCchhHH----HHHHHHHHh-CCCCCEEEEEECCCc
Confidence 45799999999654322 12212 323 46899999986542222 222222221 125899999999998
Q ss_pred ccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCCCC
Q 023298 194 VTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWGED 269 (284)
Q Consensus 194 l~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~d 269 (284)
.... ++..- .+.+.....+ ..++++||++|.|+++|++.|.+.+...+.
T Consensus 163 ~~~~-~v~~~-------------------------~~~~~~~~~~-~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 163 NPSY-NIEQK-------------------------KINERFPAIE-NRFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp CTTC-CCCHH-------------------------HHHHHCGGGT-TCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred cccc-ccCHH-------------------------HHHHHHHhcC-CceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 7533 21100 0011122222 469999999999999999999999887654
No 209
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.99 E-value=5.3e-10 Score=104.19 Aligned_cols=119 Identities=9% Similarity=0.134 Sum_probs=68.0
Q ss_pred CCEEEEeCCCCccccc---ccc---hHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 023298 115 DDYLVFDCPGQIELFT---HVP---VLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNIL 188 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~---~~~---~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVl 188 (284)
.+++|+||||+..... ... ....++...-. ....++++++|+..-....+.. .+ +..+...+.|+++|+
T Consensus 130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~~~~~~~~~-~i---~~~~~~~~~~~i~V~ 204 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDAL-KV---AKEVDPQGQRTIGVI 204 (353)
T ss_dssp CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTSCGGGCHHH-HH---HHHHCTTCTTEEEEE
T ss_pred CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCCccchhHHH-HH---HHHhCcCCCceEEEe
Confidence 5799999999865321 111 12223332212 3356788888886421111211 11 222334679999999
Q ss_pred cCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHH
Q 023298 189 SKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 189 NK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
||+|++.+.....++++. . . .....++..++++||+++.|++.|++.+.+
T Consensus 205 NK~Dl~~~~~~~~~~~~~----------~-~-------------~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLEN----------K-L-------------LPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp ECGGGSCTTCCCHHHHTT----------C-S-------------SCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccccCcchhHHHHHhC----------C-c-------------ccccCCceEEEeCCcccccccccHHHHHHH
Confidence 999998644112222210 0 0 001124567889999999999999998876
No 210
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.98 E-value=1.1e-09 Score=104.85 Aligned_cols=120 Identities=13% Similarity=0.258 Sum_probs=66.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHH---HHHHHHHHHHHHHhcCC-CEEEEec
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTK---FISGCMASLSAMVQLEL-PHVNILS 189 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~---~i~~~l~~l~~~~~~~~-p~IlVlN 189 (284)
+.++.|+||||+... ...+.. .....+++++++|+... +-.. ........+......+. |+|+|+|
T Consensus 83 ~~~~~iiDtpG~~~f------~~~~~~---~~~~aD~~ilVvDa~~g-sfe~~~~~~~qt~~~~~~~~~~~~~~iivviN 152 (435)
T 1jny_A 83 KYFFTIIDAPGHRDF------VKNMIT---GASQADAAILVVSAKKG-EYEAGMSVEGQTREHIILAKTMGLDQLIVAVN 152 (435)
T ss_dssp SCEEEECCCSSSTTH------HHHHHH---TSSCCSEEEEEEECSTT-HHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred CeEEEEEECCCcHHH------HHHHHh---hhhhcCEEEEEEECCCC-ccccccccchHHHHHHHHHHHcCCCeEEEEEE
Confidence 567999999997541 122222 23345789999999752 0000 00000111112234565 5889999
Q ss_pred CCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCC----ceEEEEeccCcccHH-----------
Q 023298 190 KMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSM----VSFMPLDLRKESSIR----------- 254 (284)
Q Consensus 190 K~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~ipiSa~~~~~l~----------- 254 (284)
|+|+......- +. +......+.+++..+++ ..++|+||++|+|+.
T Consensus 153 K~Dl~~~~~~~-~~-------------------~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~~~~~~~g 212 (435)
T 1jny_A 153 KMDLTEPPYDE-KR-------------------YKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSENMKWYNG 212 (435)
T ss_dssp CGGGSSSTTCH-HH-------------------HHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCSSCTTCCS
T ss_pred cccCCCccccH-HH-------------------HHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccccccccccc
Confidence 99997521000 00 00111223344455553 579999999999997
Q ss_pred -HHHHHHHHh
Q 023298 255 -YVLSQIDNC 263 (284)
Q Consensus 255 -~Ll~~I~~~ 263 (284)
.|++.++..
T Consensus 213 ~~Ll~~l~~~ 222 (435)
T 1jny_A 213 PTLEEYLDQL 222 (435)
T ss_dssp CCHHHHHTTC
T ss_pred hhHHHHHhcc
Confidence 567776654
No 211
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=98.98 E-value=8.5e-09 Score=88.83 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=33.8
Q ss_pred EEEEECC-C-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCC
Q 023298 21 IKCVFSP-P-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENF 61 (284)
Q Consensus 21 ~~~viG~-~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~ 61 (284)
.++|.|+ | +||||+|.|||.+|+++|+||++ +|||++..
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll--~dp~~~~~ 43 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG--YKPVASGS 43 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE--ECSEEESC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE--EcceecCC
Confidence 4777776 6 99999999999999999999999 57988644
No 212
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.97 E-value=3.9e-09 Score=89.26 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=59.5
Q ss_pred CEEEEeCCCCcccccccchHHHHHHH-HHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHH-hcCCCEEEEecCC
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDH-LKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMV-QLELPHVNILSKM 191 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~-l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~-~~~~p~IlVlNK~ 191 (284)
+++++||+|+...... +.+. .... +++++++|.. +...| +..+...+.... ..+.|+++|.||+
T Consensus 57 ~l~~~Dt~~~~~~~~~------~~~~~~~~~---~~~i~v~dv~---~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~ 124 (192)
T 2cjw_A 57 TIILLDMWENKGENEW------LHDHCMQVG---DAYLIVYSIT---DRASFEKASELRIQLRRARQTEDIPIILVGNKS 124 (192)
T ss_dssp EEEEECCCCC----CT------TGGGHHHHC---SEEEEEEETT---CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECT
T ss_pred EEEEEEeccCcchhhh------HHHhhcccC---CEEEEEEECC---CHHHHHHHHHHHHHHHHhhCCCCCeEEEEEech
Confidence 5688999997642111 1111 2222 3456666654 33333 222222222221 2368999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
|+..++ .+. .. + + ......++ ..++++||++|.|++++++.+.+.+
T Consensus 125 Dl~~~r-~v~-~~---------~---------~------~~~a~~~~-~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 125 DLVRXR-EVS-VS---------E---------G------RAXAVVFD-XKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp TCGGGC-CSC-HH---------H---------H------HHHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hhhccc-ccc-HH---------H---------H------HHHHHHhC-CceEEeccccCCCHHHHHHHHHHHH
Confidence 986432 111 00 0 0 00011222 4789999999999999999888765
No 213
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=98.97 E-value=2.7e-08 Score=92.96 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=38.9
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHH--hcCCceEEEecCcCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCE--TVRRTMHIVNLDPAAE 59 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~--~~g~~v~iVdLDPq~~ 59 (284)
+++++++.|.| +||||++.+||.+++ +.|+||++||+|||.+
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~ 61 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHN 61 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 45778899999 999999999999999 8999999999999976
No 214
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=98.96 E-value=5.2e-08 Score=91.10 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=37.9
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHH--hcCCceEEEecCcCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCE--TVRRTMHIVNLDPAAE 59 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~--~~g~~v~iVdLDPq~~ 59 (284)
.++++++-|.| +||||++.|||..|+ +.|+||++||.||+.+
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~~~ 61 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHN 61 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 35667788889 999999999999999 9999999999999855
No 215
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=1.2e-10 Score=110.70 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=40.5
Q ss_pred cCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHH-
Q 023298 180 LELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLS- 258 (284)
Q Consensus 180 ~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~- 258 (284)
..+|+++|+||+|+..++ .+..+. +..... ...++|+||+.+.++.+|++
T Consensus 213 ~~kP~i~v~NK~D~~~~~-~l~~l~---------------------------~~~~~~-~~~vv~iSA~~e~~l~~L~~~ 263 (397)
T 1wxq_A 213 VNKPMVIAANKADAASDE-QIKRLV---------------------------REEEKR-GYIVIPTSAAAELTLRKAAKA 263 (397)
T ss_dssp HHSCEEEEEECGGGSCHH-HHHHHH---------------------------HHHHHT-TCEEEEECHHHHHHHHSCSSS
T ss_pred cCCCEEEEEeCccccchH-HHHHHH---------------------------HHHhhc-CCcEEEEeccchhhHHHHHhh
Confidence 469999999999986211 121111 111112 25799999999999999888
Q ss_pred HHHHhcCCCCCCCCCCC
Q 023298 259 QIDNCIQWGEDADLKIK 275 (284)
Q Consensus 259 ~I~~~l~~g~d~~~~~~ 275 (284)
.+.+++|++++..+.+.
T Consensus 264 ~l~~~~p~~~~~~~~~~ 280 (397)
T 1wxq_A 264 GFIEYIPGASEFKVLRD 280 (397)
T ss_dssp CCCCSCC----------
T ss_pred hhhhhcCCCcccccccc
Confidence 88899999999888765
No 216
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.92 E-value=1.6e-08 Score=92.95 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=39.3
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
..+.+++++|++ |||||++.+||.+++..|.+|++++.|++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~ 145 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA 145 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH
Confidence 467889999999 9999999999999999999999999998653
No 217
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.90 E-value=2e-08 Score=83.79 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=43.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHh----cCCCEEEE
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQ----LELPHVNI 187 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~----~~~p~IlV 187 (284)
...+.++||||+.... ......+...+.. .+++++++|+. .++..+ +..++..+..... .+.|+++|
T Consensus 90 ~~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~---~~~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv 162 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLR--YKLSDYLKTRAKF---VKGLIFMVDST--VDPKKLTTTAEFLVDILSITESSCENGIDILIA 162 (193)
T ss_dssp CTTCSEEEETTCCBSS--CCHHHHHHHHGGG---EEEEEEEEETT--CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEE
T ss_pred CCeEEEEECCCCchHH--HHHHHHHHhhccc---CCEEEEEEECC--CCchhHHHHHHHHHHHHhhhhhccccCCCEEEE
Confidence 4578899999986532 1112222222222 36899999986 123222 2223222222222 37999999
Q ss_pred ecCCccccch
Q 023298 188 LSKMDLVTNK 197 (284)
Q Consensus 188 lNK~Dll~~~ 197 (284)
+||+|+....
T Consensus 163 ~nK~Dl~~~~ 172 (193)
T 2ged_A 163 CNKSELFTAR 172 (193)
T ss_dssp EECTTSTTCC
T ss_pred EEchHhcCCC
Confidence 9999997654
No 218
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.90 E-value=1.7e-09 Score=90.41 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=65.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHH--HHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKF--ISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~--i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
...+.+.||||+.+.... .. ..+.. .+++++++|.+.. ...+ +..++..+... ..+.|+++|.||+
T Consensus 55 ~~~~~i~Dt~G~~~~~~~---~~---~~~~~---~~~~i~v~d~~~~--~~s~~~~~~~~~~~~~~-~~~~piilv~nK~ 122 (184)
T 2zej_A 55 DLVLNVWDFAGREEFYST---HP---HFMTQ---RALYLAVYDLSKG--QAEVDAMKPWLFNIKAR-ASSSPVILVGTHL 122 (184)
T ss_dssp -CEEEEEEECSHHHHHTT---SH---HHHHH---SEEEEEEEEGGGC--HHHHHTHHHHHHHHHHH-CTTCEEEEEEECG
T ss_pred ceEEEEEecCCCHHHHHh---hH---HHccC---CcEEEEEEeCCcc--hhHHHHHHHHHHHHHhh-CCCCcEEEEEECC
Confidence 346789999997542211 11 11333 2466777886432 1222 33333322111 1368999999999
Q ss_pred ccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCc---eEEEEeccCcc-cHHHHHHHHHHhcCC
Q 023298 192 DLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMV---SFMPLDLRKES-SIRYVLSQIDNCIQW 266 (284)
Q Consensus 192 Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~---~~ipiSa~~~~-~l~~Ll~~I~~~l~~ 266 (284)
|+.... ....... .. ..++.+.+++. .++++||+++. +++.|++.|.+.+..
T Consensus 123 Dl~~~~-~~~~~~~-------------------~~---~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 123 DVSDEK-QRKACMS-------------------KI---TKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp GGCCHH-HHHHHHH-------------------HH---HHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred Ccccch-hhHHHHH-------------------HH---HHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 986533 2211100 00 01122334443 48999999996 999999999887654
No 219
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.90 E-value=2.2e-08 Score=99.26 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=38.4
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
.++++++.|.| +||||++.+||.++++.|+||++||+||+.+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~~~ 49 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASN 49 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCCcC
Confidence 35678888999 9999999999999999999999999999765
No 220
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.90 E-value=3.5e-09 Score=103.54 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=65.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
+..+.|+||||+....... ...+...+++++++|+.....+...- .+......+.|.|+|+||+|+
T Consensus 50 ~~~i~~iDTPGhe~f~~~~---------~~~~~~aD~aILVVda~~g~~~qT~e-----~l~~~~~~~vPiIVviNKiDl 115 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMR---------ARGAQATDIVVLVVAADDGVMPQTIE-----AIQHAKAAQVPVVVAVNKIDK 115 (501)
T ss_dssp SSCCCEECCCTTTCCTTSB---------CSSSBSCSSEEEEEETTTBSCTTTHH-----HHHHHHHTTCCEEEEEECSSS
T ss_pred CEEEEEEECCCcHHHHHHH---------HHHHhhCCEEEEEeecccCccHHHHH-----HHHHHHhcCceEEEEEEeccc
Confidence 3478999999975422111 11123346788999987543332211 111223568999999999999
Q ss_pred ccch-hhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccC-CceEEEEeccCcccHHHHHHHHHH
Q 023298 194 VTNK-KEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYS-MVSFMPLDLRKESSIRYVLSQIDN 262 (284)
Q Consensus 194 l~~~-~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~-~~~~ipiSa~~~~~l~~Ll~~I~~ 262 (284)
.... ..+...+... . .+.+.++ ...++|+||++|.|+++|++.|..
T Consensus 116 ~~~~~~~v~~~l~~~-----------~------------~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 116 PEADPDRVKNELSQY-----------G------------ILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp STTCCCCTTCCCCCC-----------C------------CCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred cccCHHHHHHHHHHh-----------h------------hhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 6421 1222211100 0 0001222 368999999999999999999865
No 221
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.87 E-value=4.3e-08 Score=98.89 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=43.2
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
...+.++||||+... ...+...+..+ +.+++++|+....++... .+ +....+.+.|.++|+||+|+
T Consensus 73 ~~~~nliDTpG~~~f------~~~~~~~l~~a---d~~ilVvD~~~g~~~qt~--~~---~~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 73 GHRVFLLDAPGYGDF------VGEIRGALEAA---DAALVAVSAEAGVQVGTE--RA---WTVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp TEEEEEEECCCSGGG------HHHHHHHHHHC---SEEEEEEETTTCSCHHHH--HH---HHHHHHTTCCEEEEEECGGG
T ss_pred CEEEEEEeCCCccch------HHHHHHHHhhc---CcEEEEEcCCcccchhHH--HH---HHHHHHccCCEEEEecCCch
Confidence 346789999997641 22344455543 578889998655444322 11 12233568999999999998
Q ss_pred c
Q 023298 194 V 194 (284)
Q Consensus 194 l 194 (284)
.
T Consensus 139 ~ 139 (665)
T 2dy1_A 139 G 139 (665)
T ss_dssp C
T ss_pred h
Confidence 6
No 222
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.87 E-value=5.7e-09 Score=97.26 Aligned_cols=78 Identities=13% Similarity=0.204 Sum_probs=42.7
Q ss_pred CCCEEEEeCCCCccccc---ccchHHHH---HH-HHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEE
Q 023298 114 DDDYLVFDCPGQIELFT---HVPVLRNF---VD-HLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVN 186 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~---~~~~~~~l---~~-~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~Il 186 (284)
..++.++||||+..... .......+ .. .+.. ++++++++|+........ .++..+..+...+.|+|+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~~~~---~~~~l~~~~~~~~~~~i~ 208 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDLATS---DAIKISREVDPSGDRTFG 208 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCGGGC---HHHHHHHHSCTTCTTEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCcCCH---HHHHHHHHhcccCCCEEE
Confidence 34789999999876321 11122222 22 2222 456777787643211111 111112233346789999
Q ss_pred EecCCccccch
Q 023298 187 ILSKMDLVTNK 197 (284)
Q Consensus 187 VlNK~Dll~~~ 197 (284)
|+||+|++.+.
T Consensus 209 V~nK~Dl~~~~ 219 (360)
T 3t34_A 209 VLTKIDLMDKG 219 (360)
T ss_dssp EEECGGGCCTT
T ss_pred EEeCCccCCCc
Confidence 99999998644
No 223
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=98.85 E-value=7e-09 Score=95.91 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=37.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
+++++++-|.| +||||++.+||.+|++.|+||++||+||+.+
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~~~ 60 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHN 60 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTTCH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCcC
Confidence 35667777888 9999999999999999999999999999955
No 224
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.85 E-value=1.2e-08 Score=98.68 Aligned_cols=103 Identities=13% Similarity=0.260 Sum_probs=55.9
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC---------CHHHHHHHHHHHHHHHHhcCCC-
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT---------DVTKFISGCMASLSAMVQLELP- 183 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~---------~~~~~i~~~l~~l~~~~~~~~p- 183 (284)
+.++.|+||||+.. | ...+...+ ...+++++++|+.... .....+ ......+.|
T Consensus 120 ~~~~~iiDtPGh~~-f-----~~~~~~~~---~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l-------~~~~~~~vp~ 183 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-Y-----VTNMINGA---SQADIGVLVISARRGEFEAGFERGGQTREHA-------VLARTQGINH 183 (467)
T ss_dssp SEEEEECCCCC-----------------T---TSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-------HHHHHTTCSS
T ss_pred CeEEEEEECCCcHH-H-----HHHHHhhc---ccCCEEEEEEeCCcCccccccCCCCcHHHHH-------HHHHHcCCCE
Confidence 45789999999754 1 11122222 3357899999997431 111111 122346788
Q ss_pred EEEEecCCccccc---hhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc-CC-----ceEEEEeccCcccHH
Q 023298 184 HVNILSKMDLVTN---KKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY-SM-----VSFMPLDLRKESSIR 254 (284)
Q Consensus 184 ~IlVlNK~Dll~~---~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~-~~-----~~~ipiSa~~~~~l~ 254 (284)
.|+|+||+|+... +..+.... ..+.+++... ++ ..++|+||++|+|+.
T Consensus 184 iivviNK~Dl~~~~~~~~~~~~i~-----------------------~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~ 240 (467)
T 1r5b_A 184 LVVVINKMDEPSVQWSEERYKECV-----------------------DKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVK 240 (467)
T ss_dssp EEEEEECTTSTTCSSCHHHHHHHH-----------------------HHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTS
T ss_pred EEEEEECccCCCccccHHHHHHHH-----------------------HHHHHHHHHhcCCCccCCceEEecccccccccc
Confidence 8999999998531 10111111 1122233333 32 569999999999987
Q ss_pred H
Q 023298 255 Y 255 (284)
Q Consensus 255 ~ 255 (284)
+
T Consensus 241 ~ 241 (467)
T 1r5b_A 241 D 241 (467)
T ss_dssp S
T ss_pred c
Confidence 6
No 225
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.84 E-value=1.8e-08 Score=92.05 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=38.5
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHh-cCCceEEEecCcCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCET-VRRTMHIVNLDPAAE 59 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~-~g~~v~iVdLDPq~~ 59 (284)
.++.+++++|++ |||||++.+||.++.. .|++|.+++.|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~ 147 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI 147 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc
Confidence 356789999999 9999999999999985 899999999999753
No 226
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.81 E-value=2.1e-08 Score=84.76 Aligned_cols=113 Identities=12% Similarity=0.132 Sum_probs=63.2
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
++.+.||||+.... ..... .++. .+++++++|.....+... +..++..+......+.|+++|+||+|+..
T Consensus 55 ~~~i~Dt~g~~~~~---~~~~~---~~~~---~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 55 KAQIWDTAGQERYR---RITSA---YYRG---AVGALLVYDIAKHLTYEN-VERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp EEEEEECSSGGGTT---CCCHH---HHTT---CSEEEEEEETTCHHHHHT-HHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEECCCchhhh---hhhHH---HHhc---CCEEEEEEECcCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 56789999975421 11111 1222 356888899753211111 22232222222224689999999999854
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.. ... . + .. ..+..+.+ ..++.+||+++.|++++++.|.+.+.
T Consensus 125 ~~-~~~--~----~----------------~a---~~l~~~~~-~~~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 125 LR-AVP--T----D----------------EA---RAFAEKNN-LSFIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp GC-CSC--H----H----------------HH---HHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cc-CcC--H----H----------------HH---HHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22 110 0 0 00 11122333 46888999999999999998887653
No 227
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.80 E-value=3e-08 Score=93.67 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=72.8
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCccccccccccHHHHhhhcCcccCchhhhhhHh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIRELISLEDVMEELGLGPNGGLIYCMEH 96 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir~~i~~~~vm~~~~lgPng~l~~~~e~ 96 (284)
|-..|.++|.| ||||||...|+. .++.....|+. .+-|+-+.+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~-------------~~~~v~~~pft------------------T~~~~~g~~----- 114 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTG-------------TESEAAEYEFT------------------TLVTVPGVI----- 114 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHS-------------BCCCGGGTCSS------------------CCCEEEEEE-----
T ss_pred CCCeEEEECCCCCCHHHHHHHHhC-------------CCCcccCCCCc------------------eeeeeeEEE-----
Confidence 44468999999 999999999875 22333333331 111332221
Q ss_pred hhhcHHHHHHHHhhccCCCCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHH
Q 023298 97 LEDNLDDWLAEELDNYLDDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLS 175 (284)
Q Consensus 97 ~~~~~~~~l~~~l~~~~~~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~ 175 (284)
.+.+.++.++||||.++... ....+++++..+.. ++++++++|+. +|...+..+...+.
T Consensus 115 --------------~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~---ad~il~vvD~~---~p~~~~~~i~~EL~ 174 (376)
T 4a9a_A 115 --------------RYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART---CNLLFIILDVN---KPLHHKQIIEKELE 174 (376)
T ss_dssp --------------EETTEEEEEEECGGGCCC-----CHHHHHHHHHHH---CSEEEEEEETT---SHHHHHHHHHHHHH
T ss_pred --------------EeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh---cCccccccccC---ccHHHHHHHHHHHH
Confidence 11145789999999987532 33456667777765 36899999986 44433332222222
Q ss_pred HH-Hh-cCCCEEEEecCCcc
Q 023298 176 AM-VQ-LELPHVNILSKMDL 193 (284)
Q Consensus 176 ~~-~~-~~~p~IlVlNK~Dl 193 (284)
.. .+ .++|.++++||+|.
T Consensus 175 ~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 175 GVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HTTEEETCCCCCEEEEECSS
T ss_pred HhhHhhccCChhhhhhHhhh
Confidence 22 12 36899999999996
No 228
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.78 E-value=1.6e-08 Score=101.52 Aligned_cols=140 Identities=14% Similarity=0.168 Sum_probs=81.7
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++.+-+|||||+.. ....+.+.|.. .+.++++||+... ......++. ...+.++|.|+++||+|
T Consensus 66 ~~~iNlIDTPGH~D------F~~Ev~raL~~---~DgavlVVDa~~GV~~qT~~v~~------~a~~~~lp~i~~INKmD 130 (638)
T 3j25_A 66 NTKVNIIDTPGHMD------FLAEVYRSLSV---LDGAILLISAKDGVQAQTRILFH------ALRKMGIPTIFFINKID 130 (638)
T ss_dssp SCBCCCEECCCSSS------THHHHHHHHTT---CSEEECCEESSCTTCSHHHHHHH------HHHHHTCSCEECCEECC
T ss_pred CEEEEEEECCCcHH------HHHHHHHHHHH---hCEEEEEEeCCCCCcHHHHHHHH------HHHHcCCCeEEEEeccc
Confidence 56789999999765 23445566654 4678889999765 333444433 23467899999999999
Q ss_pred cccchh-----hhhhhcCc-------------------chHHHHHHhhhcc-----------hhHHHHHHHHHHHHHhcc
Q 023298 193 LVTNKK-----EIEDYLNP-------------------ESQFLLSELNQHM-----------APQFAKLNKSLIELVDEY 237 (284)
Q Consensus 193 ll~~~~-----~l~~~l~~-------------------~~~~l~~~l~~~~-----------~~~~~~l~~~i~~~l~~~ 237 (284)
....+. ++.+.+.. ....+.+.+.+.. .-....+...+...+...
T Consensus 131 r~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 210 (638)
T 3j25_A 131 QNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNC 210 (638)
T ss_dssp SSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccc
Confidence 864221 11111100 0000111110000 000011222333334445
Q ss_pred CCceEEEEeccCcccHHHHHHHHHHhcCCCC
Q 023298 238 SMVSFMPLDLRKESSIRYVLSQIDNCIQWGE 268 (284)
Q Consensus 238 ~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g~ 268 (284)
.+..++..||+++.|++.|++.|.+.+|.-.
T Consensus 211 ~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~ 241 (638)
T 3j25_A 211 SLFPLYHGSAKSNIGIDNLIEVITNKFYSST 241 (638)
T ss_dssp SCCCCCCCCSTTCCSHHHHHHHHHHSCCCSG
T ss_pred ccccccccccccCCCchhHhhhhhccccCcc
Confidence 5677788899999999999999999888643
No 229
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.76 E-value=4.1e-08 Score=87.37 Aligned_cols=23 Identities=17% Similarity=0.093 Sum_probs=20.0
Q ss_pred CceEEEEECCC-CcHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYR 40 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~ 40 (284)
+...++|+|.+ |||||+...|..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 45679999999 999999998874
No 230
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=98.75 E-value=4.4e-07 Score=89.81 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=37.1
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
+...+++.|.| +||||++.+||..+++.|++|++||+||+.+.
T Consensus 326 ~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~~l 369 (589)
T 1ihu_A 326 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHL 369 (589)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC---
T ss_pred CCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcccH
Confidence 45667788899 99999999999999999999999999999763
No 231
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.73 E-value=2.3e-07 Score=91.63 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=47.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++.+-||||||+... .....+.|..+ +.+|++||+...-.+ ...++. ...+.++|.|+++||+|
T Consensus 99 ~~~iNlIDTPGHvDF------~~Ev~raL~~~---DgAvlVvda~~GV~~qT~~v~~------~a~~~~lp~i~fINK~D 163 (548)
T 3vqt_A 99 DRVVNLLDTPGHQDF------SEDTYRVLTAV---DSALVVIDAAKGVEAQTRKLMD------VCRMRATPVMTFVNKMD 163 (548)
T ss_dssp TEEEEEECCCCGGGC------SHHHHHHHHSC---SEEEEEEETTTBSCHHHHHHHH------HHHHTTCCEEEEEECTT
T ss_pred CEEEEEEeCCCcHHH------HHHHHHHHHhc---CceEEEeecCCCcccccHHHHH------HHHHhCCceEEEEeccc
Confidence 568899999997752 23455667654 578889999865443 333433 33478999999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
...
T Consensus 164 r~~ 166 (548)
T 3vqt_A 164 REA 166 (548)
T ss_dssp SCC
T ss_pred chh
Confidence 854
No 232
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.69 E-value=3.8e-07 Score=92.57 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=46.5
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
++.+-+|||||+.. ......++|..+ +.++.+||+...-.+ ...++. ...+.++|.|+++||+|
T Consensus 84 ~~~iNlIDTPGHvD------F~~Ev~~aLr~~---DgavlvVDaveGV~~qT~~v~~------~a~~~~lp~i~~iNKiD 148 (709)
T 4fn5_A 84 NYRVNVIDTPGHVD------FTIEVERSLRVL---DGAVVVFCGTSGVEPQSETVWR------QANKYGVPRIVYVNKMD 148 (709)
T ss_dssp CEEEEEECCCSCTT------CHHHHHHHHHHC---SEEEEEEETTTCSCHHHHHHHH------HHHHHTCCEEEEEECSS
T ss_pred CEEEEEEeCCCCcc------cHHHHHHHHHHh---CeEEEEEECCCCCchhHHHHHH------HHHHcCCCeEEEEcccc
Confidence 45688999999776 234456667654 567889999765333 333332 33467899999999999
Q ss_pred ccc
Q 023298 193 LVT 195 (284)
Q Consensus 193 ll~ 195 (284)
...
T Consensus 149 r~~ 151 (709)
T 4fn5_A 149 RQG 151 (709)
T ss_dssp STT
T ss_pred ccC
Confidence 854
No 233
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.68 E-value=1.2e-07 Score=84.67 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=19.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYR 40 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~ 40 (284)
+...++|+|.+ |||||++..|..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 35669999999 999999998874
No 234
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.66 E-value=3.5e-07 Score=76.95 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=61.1
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
++.+.||||+...... .. ..++. .+.+++++|.....+.. .+..++..+......+.|+++|+||+|+..
T Consensus 79 ~~~i~Dt~g~~~~~~~---~~---~~~~~---~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 79 KAQIWDTAGLERYRAI---TS---AYYRG---AVGALLVYDIAKHLTYE-NVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEEECSCCSSSCC---CH---HHHTT---CCEEEEEEETTCHHHHH-THHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEECCCCcchhhh---hH---HHhhc---CCEEEEEEECcCHHHHH-HHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 4567899997542111 11 11222 24677888875321111 122222222222224689999999999854
Q ss_pred chhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 196 NKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 196 ~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.. ... . ... ..+..+.+ ..++.+||+++.|++++++.|.+.+
T Consensus 149 ~~-~~~--~--------------------~~a---~~l~~~~~-~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 149 LR-AVP--T--------------------DEA---RAFAEKNG-LSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp GC-CSC--H--------------------HHH---HHHHHHTT-CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cc-ccC--H--------------------HHH---HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 22 110 0 000 11112233 4788899999999999999987653
No 235
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.63 E-value=6.1e-07 Score=84.42 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=30.3
Q ss_pred CCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCCC
Q 023298 115 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQF 159 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~~ 159 (284)
..+.++||||+.+... ....++++..++.. .+++++++|+..
T Consensus 69 ~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~---ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHKGEGLGNQFLAHIRE---VAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCSSSCTTHHHHHHHHT---CSEEEEEEECCC
T ss_pred ceEEEEECCCccccccccchHHHHHHHHHHh---CCEEEEEEECCC
Confidence 4689999999987532 23455667777765 368999999974
No 236
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.62 E-value=1.6e-08 Score=94.81 Aligned_cols=87 Identities=16% Similarity=0.270 Sum_probs=46.0
Q ss_pred eEEEEEecC-CCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHH
Q 023298 149 VCAVYLLDS-QFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLN 227 (284)
Q Consensus 149 ~vil~LiDa-~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~ 227 (284)
++++|+|+. .....+.+. .++.. ...+.|+|+|+||+|+.... ++..+.
T Consensus 147 ~~~vy~I~~~~~~l~~~d~--~~~~~----l~~~~piIlV~NK~Dl~~~~-ev~~~k----------------------- 196 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDV--AFMKA----IHNKVNIVPVIAKADTLTLK-ERERLK----------------------- 196 (361)
T ss_dssp CEEEEEECSSSSSCCHHHH--HHHHH----TCS-SCEEEEEECCSSSCHH-HHHHHH-----------------------
T ss_pred EEEEEEEecCCCCcchhHH--HHHHH----hccCCCEEEEEECCCCCCHH-HHHHHH-----------------------
Confidence 357888876 333333332 11121 23578999999999997644 333221
Q ss_pred HHHHHHHhccCCceEEEEeccCccc---HHHHHHHHHHhcCC
Q 023298 228 KSLIELVDEYSMVSFMPLDLRKESS---IRYVLSQIDNCIQW 266 (284)
Q Consensus 228 ~~i~~~l~~~~~~~~ipiSa~~~~~---l~~Ll~~I~~~l~~ 266 (284)
..+.+.+..++ ..++++||+++.+ +..+...|.+.+|.
T Consensus 197 ~~i~~~~~~~~-i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 197 KRILDEIEEHN-IKIYHLPDAESDEDEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHTTCC--CCSCCCC---------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHCC-CCEEeCCCcCCCcchhHHHHHHHHHhcCCC
Confidence 12233344444 5789999998876 44566777777776
No 237
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.61 E-value=3.2e-08 Score=97.74 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=44.2
Q ss_pred CEEEEeCCCCcccccc---cch-HHHHH-HHHHhcCCCeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEec
Q 023298 116 DYLVFDCPGQIELFTH---VPV-LRNFV-DHLKSRNFNVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILS 189 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~---~~~-~~~l~-~~l~~~d~~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlN 189 (284)
+++||||||+...... ... ...+. ..+.. .+++++++|+... ..... ..+ +..+.+.+.|+++|+|
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~---aD~il~VvDa~~~~~~~~~--~~~---l~~l~~~~~pvilVlN 226 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAER---VDLIILLFDAHKLEISDEF--SEA---IGALRGHEDKIRVVLN 226 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHH---CSEEEEEEETTSCCCCHHH--HHH---HHHTTTCGGGEEEEEE
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHh---CCEEEEEEeCCcCCCCHHH--HHH---HHHHHhcCCCEEEEEE
Confidence 6899999998752110 000 11222 22333 3689999999764 22221 111 2223345789999999
Q ss_pred CCccccchhhhh
Q 023298 190 KMDLVTNKKEIE 201 (284)
Q Consensus 190 K~Dll~~~~~l~ 201 (284)
|+|++..+ ++.
T Consensus 227 K~Dl~~~~-el~ 237 (550)
T 2qpt_A 227 KADMVETQ-QLM 237 (550)
T ss_dssp CGGGSCHH-HHH
T ss_pred CCCccCHH-HHH
Confidence 99998654 443
No 238
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.61 E-value=3.5e-07 Score=81.05 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=55.9
Q ss_pred CeEEEEEecCCCC--CCHHHHHHHHHHHHHHH-HhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHH
Q 023298 148 NVCAVYLLDSQFI--TDVTKFISGCMASLSAM-VQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFA 224 (284)
Q Consensus 148 ~~vil~LiDa~~~--~~~~~~i~~~l~~l~~~-~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~ 224 (284)
.+++++++|+... .+-.. +..++..+... ...+.|+++|.||+|+..+. .+.+.
T Consensus 163 ad~vilV~D~t~~~~~s~~~-~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-~v~~~--------------------- 219 (255)
T 3c5h_A 163 VDGFLLGIDVSRGMNRNFDD-QLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER-YIRDA--------------------- 219 (255)
T ss_dssp CCEEEEEEECBC----CHHH-HHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH-HHHHH---------------------
T ss_pred CCEEEEEEECCCCchhhHHH-HHHHHHHHHHHhccCCCCEEEEEEcccccccH-HHHHH---------------------
Confidence 4789999998653 33222 33444333322 23578999999999986433 22111
Q ss_pred HHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 225 KLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 225 ~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.++........++++||++|.|++++++.|.+.+
T Consensus 220 ------~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 220 ------HTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ------HHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------HHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 1111222235899999999999999999987764
No 239
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.58 E-value=5.4e-08 Score=85.82 Aligned_cols=44 Identities=2% Similarity=-0.158 Sum_probs=40.2
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAEN 60 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~ 60 (284)
.|...+++.|+| |||||++.++|..+++.|++|+++++|||++.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCCh
Confidence 355668999999 99999999999999999999999999999874
No 240
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=98.58 E-value=1.2e-07 Score=89.38 Aligned_cols=40 Identities=5% Similarity=0.065 Sum_probs=37.3
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
++++++.|.| +||||++.++|.++++.|+||++||+ ||.+
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~~~ 42 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AEPV 42 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SCSH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CCCC
Confidence 4568889999 99999999999999999999999999 9987
No 241
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.51 E-value=2.6e-06 Score=78.92 Aligned_cols=42 Identities=10% Similarity=-0.045 Sum_probs=38.4
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
.++.++.++||. |||||++..|+.++...+.+|.+++.|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 467889999999 999999999999999999999999999754
No 242
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.44 E-value=1.5e-06 Score=84.78 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=39.0
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
...++.++.|+|+. |||||++..|+.++...+.+|.+.+.|+..
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 35678889999999 999999999999999888899999888754
No 243
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.40 E-value=9.5e-07 Score=80.58 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=42.6
Q ss_pred eEEEEEecCCC-CCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHH
Q 023298 149 VCAVYLLDSQF-ITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLN 227 (284)
Q Consensus 149 ~vil~LiDa~~-~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~ 227 (284)
++++|+++... ..++... .++. .+ ..+.|+++|+||+|+...+ ++..+.
T Consensus 128 ~~ll~ldePt~~~Ld~~~~--~~l~---~l-~~~~~iilV~~K~Dl~~~~-e~~~~~----------------------- 177 (301)
T 2qnr_A 128 HCCFYFISPFGHGLKPLDV--AFMK---AI-HNKVNIVPVIAKADTLTLK-ERERLK----------------------- 177 (301)
T ss_dssp CEEEEEECSSSSSCCHHHH--HHHH---HH-TTTSCEEEEECCGGGSCHH-HHHHHH-----------------------
T ss_pred hheeeeecCcccCCCHHHH--HHHH---HH-HhcCCEEEEEEeCCCCCHH-HHHHHH-----------------------
Confidence 34777777543 2455442 2222 11 2357999999999997543 332211
Q ss_pred HHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 228 KSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 228 ~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
..+.+.+..++ ..++++||+++ ++++++..+.+.+
T Consensus 178 ~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 178 KRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHTT-CCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHh
Confidence 11233344555 58899999999 9999877666554
No 244
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.35 E-value=1.2e-05 Score=75.48 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=28.7
Q ss_pred CCCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCCC
Q 023298 114 DDDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQF 159 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~~ 159 (284)
..++.++||||+.+... ....++.+..++.. .+++++++|+..
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~---ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRE---TDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHT---CSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHh---cCeEEEEEecCC
Confidence 35789999999886421 12333445566654 368999999874
No 245
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.32 E-value=9.9e-07 Score=84.33 Aligned_cols=88 Identities=10% Similarity=0.273 Sum_probs=40.3
Q ss_pred eEEEEEecCC-CCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHHH
Q 023298 149 VCAVYLLDSQ-FITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLN 227 (284)
Q Consensus 149 ~vil~LiDa~-~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~ 227 (284)
.+++|++++. ...++.+. .++. .+ ..+.|+|+|+||+|++... ++..+.+
T Consensus 140 ~vlL~ldePt~~~L~~~d~--~~lk---~L-~~~v~iIlVinK~Dll~~~-ev~~~k~---------------------- 190 (418)
T 2qag_C 140 QCCLYFIAPSGHGLKPLDI--EFMK---RL-HEKVNIIPLIAKADTLTPE-ECQQFKK---------------------- 190 (418)
T ss_dssp CEEEEECCC-CCSCCHHHH--HHHH---HH-TTTSEEEEEEESTTSSCHH-HHHHHHH----------------------
T ss_pred eEEEEEecCcccCCCHHHH--HHHH---HH-hccCcEEEEEEcccCccHH-HHHHHHH----------------------
Confidence 3577777765 33455442 1222 12 2378999999999998654 4443321
Q ss_pred HHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcCCC
Q 023298 228 KSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQWG 267 (284)
Q Consensus 228 ~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~~g 267 (284)
.+.+.+..++ ..++..|+.+++++..+...+...+|+.
T Consensus 191 -~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iPfa 228 (418)
T 2qag_C 191 -QIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLPLA 228 (418)
T ss_dssp -HHHHHHHHHT-CCCCCCC-----------------CCEE
T ss_pred -HHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCCcc
Confidence 1122233333 5678889999999999988898888874
No 246
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=98.30 E-value=5.5e-06 Score=72.64 Aligned_cols=163 Identities=12% Similarity=0.103 Sum_probs=83.7
Q ss_pred cCceEEEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCCCcccccc--cccc----H---HHHhhhcCcc
Q 023298 17 YALVIKCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDYPVAMDIR--ELIS----L---EDVMEELGLG 85 (284)
Q Consensus 17 ~~~~~~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~~~~~dir--~~i~----~---~~vm~~~~lg 85 (284)
++++.++|.|+. |||||.+..|+.+|+++|++|.. .-|.++...+..+ .++ |... . .+.+.-+-+.
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~--~KPv~~g~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLC--LKPVASGQSQFSE-LCEDVESILNAYKHKFTAAEINLISFN 78 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE--ECSEEESBCSSSS-SBHHHHHHHHHTTTSSCHHHHCSEEES
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEE--ecceeecCccCCC-CCChHHHHHHhcCCCCChhhEEEEEEC
Confidence 356779999996 99999999999999999999999 4576554333110 010 1000 0 0001101110
Q ss_pred cCchhhhhhHhhh--hcHHHHHHHHhhc-cC-CCCEEEEeCCCCccc-ccccchHHHHHHHHHhcCCCeEEEEEecCCCC
Q 023298 86 PNGGLIYCMEHLE--DNLDDWLAEELDN-YL-DDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFI 160 (284)
Q Consensus 86 Png~l~~~~e~~~--~~~~~~l~~~l~~-~~-~~~~viiDtPg~~e~-~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~ 160 (284)
+.-+.-.+.++.. ... +.+.+.+++ .. ++++++||+||.... .......-.+.+.+ +.. ++.++++...
T Consensus 79 ~p~sp~~aa~~~~~~i~~-~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~adla~~l---~~p--viLV~~~~~~ 152 (228)
T 3of5_A 79 QAVAPHIIAAKTKVDISI-ENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLDLIKAL---QIP--VLLVSAIKVG 152 (228)
T ss_dssp SSSCHHHHHHHTTCCCCH-HHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHHHHHHH---TCC--EEEEEECSTT
T ss_pred CCCCHHHHHHHcCCCCCH-HHHHHHHHHHHHccCCEEEEECCCccccccccchhHHHHHHHc---CCC--EEEEEcCCcc
Confidence 0000000111100 012 233444443 22 789999999985432 11111223344444 212 5667777532
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCE-EEEecCCcc
Q 023298 161 TDVTKFISGCMASLSAMVQLELPH-VNILSKMDL 193 (284)
Q Consensus 161 ~~~~~~i~~~l~~l~~~~~~~~p~-IlVlNK~Dl 193 (284)
. +...+.++..+.+.+.++ =+|+||++.
T Consensus 153 ~-----i~~~~~~~~~l~~~~~~i~GvIlN~~~~ 181 (228)
T 3of5_A 153 C-----INHTLLTINELNRHNIKLAGWIANCNDS 181 (228)
T ss_dssp H-----HHHHHHHHHHHHHTTCCEEEEEEEECCT
T ss_pred h-----HHHHHHHHHHHHhCCCcEEEEEEECcCC
Confidence 1 333334455555667775 477999864
No 247
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.27 E-value=2.9e-05 Score=70.98 Aligned_cols=41 Identities=12% Similarity=0.026 Sum_probs=37.3
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
++.++.++||. |||||++..|+.++...+.+|.+.+.|...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 46789999999 999999999999999889999999999764
No 248
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=98.12 E-value=0.00014 Score=64.39 Aligned_cols=161 Identities=13% Similarity=0.137 Sum_probs=85.6
Q ss_pred ceEEEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCCCCCCC-C-cccccccc----------ccHHHHhhhcCc
Q 023298 19 LVIKCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAAENFDY-P-VAMDIREL----------ISLEDVMEELGL 84 (284)
Q Consensus 19 ~~~~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~~~~~-~-~~~dir~~----------i~~~~vm~~~~l 84 (284)
.+.++|.|+. |||||.+..|+.+|+++|++|..+ .|++..... . .+.|...+ +.. +-+..+-+
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f--KPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~-~~~~p~~~ 97 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILL--KPIETGVNDAINHSSDAHLFLQDNRLLDRSLTL-KDISFYRY 97 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE--CCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCH-HHHCCEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE--eeeecCCcccCCCCchHHHHHHHHHHHhCCCCh-HHeeeEEE
Confidence 3668999996 999999999999999999999997 565543211 0 11232221 000 11111111
Q ss_pred c-cCchhhhh-hHhh--hhcHHHHHHHHhhccC-CCCEEEEeCCCCccc-ccccchHHHHHHHHHhcCCCeEEEEEecCC
Q 023298 85 G-PNGGLIYC-MEHL--EDNLDDWLAEELDNYL-DDDYLVFDCPGQIEL-FTHVPVLRNFVDHLKSRNFNVCAVYLLDSQ 158 (284)
Q Consensus 85 g-Png~l~~~-~e~~--~~~~~~~l~~~l~~~~-~~~~viiDtPg~~e~-~~~~~~~~~l~~~l~~~d~~~vil~LiDa~ 158 (284)
. |....+.+ .+-. .... +.+.+.+++.. ++++++|+++|.... .......-.+.+.+ + .-+++++++.
T Consensus 98 ~~p~sp~~aa~~~g~~~~i~~-~~I~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~adlA~~l---~--~pVILV~~~~ 171 (242)
T 3qxc_A 98 HKVSAPLIAQQEEDPNAPIDT-DNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKL---K--AKMLLISHDN 171 (242)
T ss_dssp SSSSCHHHHHHHHCTTCCCCH-HHHHHHHHHGGGTCSEEEEECCSCTTCBSSSSCBHHHHHHHH---T--CEEEEEECCS
T ss_pred CCCCChHHHHHHcCCCCcCCH-HHHHHHHHHHHhcCCEEEEECCCCccccccccchHHHHHHHc---C--CCEEEEEcCC
Confidence 0 11111111 0100 0012 22333333322 789999999985532 11112223344444 2 2367778875
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 159 FITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 159 ~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
.. -+...+.++..+.+.+.+.=+|+|+++-
T Consensus 172 lg-----~i~~~~lt~~~l~~~g~~~GvIlN~v~~ 201 (242)
T 3qxc_A 172 LG-----LINDCLLNDFLLKSHQLDYKIAINLKGN 201 (242)
T ss_dssp TT-----HHHHHHHHHHHHHTSSSCEEEEECCCTT
T ss_pred Cc-----HHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 32 2444445555666666667788999874
No 249
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.10 E-value=8.9e-06 Score=75.69 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.1
Q ss_pred ceEEEEeccCcccHHHHHHHHHHhc
Q 023298 240 VSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 240 ~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.-++..||++..|+..++..+.+.+
T Consensus 302 iy~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHHHHHHHHH
Confidence 5678999999999999998877653
No 250
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.09 E-value=6.2e-06 Score=85.21 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=43.6
Q ss_pred CCCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 114 DDDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 114 ~~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
++.+.|+||||+.... ......+.. .+.+++++|+....+.... .. +....+.+.|.++|+||+|+
T Consensus 97 ~~~i~liDTPG~~df~------~~~~~~l~~---aD~ailVvDa~~g~~~qt~-~~----~~~~~~~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFS------SEVTAALRV---TDGALVVVDTIEGVCVQTE-TV----LRQALGERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEEECCCCCCSSC------HHHHHHHHT---CSEEEEEEETTTBSCHHHH-HH----HHHHHHTTCEEEEEEECHHH
T ss_pred CceEEEEECcCchhhH------HHHHHHHHh---CCEEEEEEeCCCCCCHHHH-HH----HHHHHHcCCCeEEEEECCCc
Confidence 3568999999987621 123344544 3678999999865444332 11 11223568999999999998
Q ss_pred c
Q 023298 194 V 194 (284)
Q Consensus 194 l 194 (284)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 6
No 251
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.05 E-value=5.3e-05 Score=70.17 Aligned_cols=121 Identities=22% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCEEEEeCCCCcccccccchHHHHHH-HHHhcCCCeEEEEEecCCCCCC-HHHHHHHHHHHHHHHHhcCCCEEEEecCCc
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVD-HLKSRNFNVCAVYLLDSQFITD-VTKFISGCMASLSAMVQLELPHVNILSKMD 192 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~-~l~~~d~~~vil~LiDa~~~~~-~~~~i~~~l~~l~~~~~~~~p~IlVlNK~D 192 (284)
.++-|.|||||-... .+.. +.+ .+.. ..++++++|+..... ....+..++..+.. ..-+.|+++|.||+|
T Consensus 46 v~LqIWDTAGQErf~--~~~l--~~~~yyr~---a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~-~~~~ipillvgNK~D 117 (331)
T 3r7w_B 46 IDLAVMELPGQLNYF--EPSY--DSERLFKS---VGALVYVIDSQDEYINAITNLAMIIEYAYK-VNPSINIEVLIHKVD 117 (331)
T ss_dssp SCEEEEECCSCSSSC--CCSH--HHHHHHTT---CSEEEEECCCSSCTTHHHHHHHHHHHHHHH-HCTTCEEEEECCCCC
T ss_pred EEEEEEECCCchhcc--chhh--hhhhhccC---CCEEEEEEECCchHHHHHHHHHHHHHHHhh-cCCCCcEEEEEECcc
Confidence 468999999997632 1111 111 1333 357999999875311 11122222221111 123689999999999
Q ss_pred cccchhhhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhcc----CCceEEEEeccCcccHHHHHHHHHHhc
Q 023298 193 LVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEY----SMVSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 193 ll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~----~~~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
+..+. +-... .+.......+-+.+. ....|+.-||++ .++.+.+..|...+
T Consensus 118 L~~~~-~R~~~-------------------~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 118 GLSED-FKVDA-------------------QRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp SSCSH-HHHHH-------------------HHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred cCchh-hhhhH-------------------HHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 97643 11000 001111112222232 136899999998 58988887776543
No 252
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.05 E-value=6e-06 Score=74.69 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=62.3
Q ss_pred eCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhh
Q 023298 121 DCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKE 199 (284)
Q Consensus 121 DtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~ 199 (284)
..||++... .+++.+.+.. .+++++++|+...... ...+..+ . .++|.++|+||+|++... .
T Consensus 5 w~PGhm~ka-----~~~~~~~l~~---aDvVl~VvDAr~p~~~~~~~l~~~-------l-~~kp~ilVlNK~DL~~~~-~ 67 (282)
T 1puj_A 5 WFPGHMAKA-----RREVTEKLKL---IDIVYELVDARIPMSSRNPMIEDI-------L-KNKPRIMLLNKADKADAA-V 67 (282)
T ss_dssp ----CTTHH-----HHHHHHHGGG---CSEEEEEEETTSTTTTSCHHHHHH-------C-SSSCEEEEEECGGGSCHH-H
T ss_pred CCchHHHHH-----HHHHHHHHhh---CCEEEEEEeCCCCCccCCHHHHHH-------H-CCCCEEEEEECcccCCHH-H
Confidence 578876421 2344455544 4789999999754222 2223322 1 479999999999998643 3
Q ss_pred hhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 200 IEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 200 l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.+.|. +.+++.+ ..++++||.++.|+.+|++.+.+.++
T Consensus 68 ~~~~~---------------------------~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 68 TQQWK---------------------------EHFENQG-IRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHH---------------------------HHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHH---------------------------HHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHH
Confidence 33332 2223333 37899999999999999998887764
No 253
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.04 E-value=2.1e-05 Score=74.98 Aligned_cols=127 Identities=11% Similarity=0.104 Sum_probs=69.0
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcccc
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVT 195 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~ 195 (284)
+..+.|+||... .. .....+++.+.-.+. +..++ ++..........++. .+.+.++|+++|+||.|++-
T Consensus 121 ~ltv~D~~g~~~--~~-~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~------aL~~~~~p~~lV~tkpdlll 189 (413)
T 1tq4_A 121 NVVFWDLPGIGS--TN-FPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAK------AISMMKKEFYFVRTKVDSDI 189 (413)
T ss_dssp TEEEEECCCGGG--SS-CCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHH------HHHHTTCEEEEEECCHHHHH
T ss_pred CeeehHhhcccc--hH-HHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHH------HHHhcCCCeEEEEecCcccc
Confidence 678999999653 22 223334444321122 23344 555432222222322 33456899999999999852
Q ss_pred -chh--hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHH----Hhc--cCCceEEEEec--cCcccHHHHHHHHHHhc
Q 023298 196 -NKK--EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIEL----VDE--YSMVSFMPLDL--RKESSIRYVLSQIDNCI 264 (284)
Q Consensus 196 -~~~--~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~----l~~--~~~~~~ipiSa--~~~~~l~~Ll~~I~~~l 264 (284)
++. .+.... .. ++...|.++ +.+ ..+..++++|+ .++.+++.|.+.|.+.+
T Consensus 190 LDEPtsgLD~~~---~~---------------~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 190 TNEADGEPQTFD---KE---------------KVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp HHHHTTCCTTCC---HH---------------HHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred cCcccccCCHHH---HH---------------HHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 110 010000 00 111111222 122 23568999999 56667999999999999
Q ss_pred CCCCCCC
Q 023298 265 QWGEDAD 271 (284)
Q Consensus 265 ~~g~d~~ 271 (284)
|+|+..-
T Consensus 252 peg~~~~ 258 (413)
T 1tq4_A 252 PIYKRHN 258 (413)
T ss_dssp CGGGHHH
T ss_pred ccchhhH
Confidence 9998443
No 254
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.98 E-value=2.8e-06 Score=80.62 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=23.1
Q ss_pred cccccccCceEEEEECCC-CcHHHHHHHHHH
Q 023298 11 GYMSWLYALVIKCVFSPP-PNQSTYCSSLYR 40 (284)
Q Consensus 11 ~~~~~~~~~~~~~viG~~-sGKTT~~~~La~ 40 (284)
.+...+.....+.++|++ |||||+...|+.
T Consensus 14 ~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg 44 (396)
T 2ohf_A 14 PIIGRFGTSLKIGIVGLPNVGKSTFFNVLTN 44 (396)
T ss_dssp --CCCSSSCCCEEEECCSSSSHHHHHHHHHC
T ss_pred HHHhhccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 345555556669999999 999999999875
No 255
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.92 E-value=3.7e-05 Score=71.78 Aligned_cols=29 Identities=10% Similarity=-0.045 Sum_probs=22.5
Q ss_pred cccccCceEEEEECCC-CcHHHHHHHHHHH
Q 023298 13 MSWLYALVIKCVFSPP-PNQSTYCSSLYRH 41 (284)
Q Consensus 13 ~~~~~~~~~~~viG~~-sGKTT~~~~La~~ 41 (284)
|.+-.....++++|.| |||||+.+.+.-.
T Consensus 3 ~~~~~~~~k~lllG~~~sGKsT~~kq~~~~ 32 (354)
T 2xtz_A 3 MGSGIHIRKLLLLGAGESGKSTIFKQIKLL 32 (354)
T ss_dssp CCCCCEEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCceeEEEECCCCCcHHHHHHHHHHH
Confidence 4444445568999999 9999999998753
No 256
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.89 E-value=0.00017 Score=68.51 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=20.9
Q ss_pred ceEEEEeccCcccHHHHHHHHHHhc
Q 023298 240 VSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 240 ~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.-++..||++++|+..++..+.+.+
T Consensus 359 ~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 359 CYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCcCHHHHHHHHHHHH
Confidence 4578899999999999998876543
No 257
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=97.86 E-value=3e-05 Score=71.73 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.2
Q ss_pred ceEEEEeccCcccHHHHHHHHHHhc
Q 023298 240 VSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 240 ~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.-++..||+++.|++.++..+.+.+
T Consensus 292 i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 292 IYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEeecCHHHHHHHHHHHHHH
Confidence 5678899999999999999887653
No 258
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.81 E-value=0.00018 Score=67.40 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=37.4
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
+.....++|.|++ +||||+|.+++..+++.|.+|++|+++...
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 3445568899999 999999999999999999999999998644
No 259
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.77 E-value=0.0006 Score=64.47 Aligned_cols=28 Identities=11% Similarity=0.102 Sum_probs=22.8
Q ss_pred cccccCceEEEEECCC-CcHHHHHHHHHH
Q 023298 13 MSWLYALVIKCVFSPP-PNQSTYCSSLYR 40 (284)
Q Consensus 13 ~~~~~~~~~~~viG~~-sGKTT~~~~La~ 40 (284)
+........+.++|++ |||||+...|+.
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3444555669999999 999999999987
No 260
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.72 E-value=8.8e-05 Score=67.46 Aligned_cols=84 Identities=8% Similarity=0.184 Sum_probs=53.2
Q ss_pred CeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHH
Q 023298 148 NVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL 226 (284)
Q Consensus 148 ~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l 226 (284)
.+++++++|+.... +.. .+..++. .+...++|.++|+||+|+.++. ++....
T Consensus 80 aD~vliV~d~~~p~~s~~-~l~~~l~---~~~~~~~~~ilV~NK~DL~~~~-~v~~~~---------------------- 132 (302)
T 2yv5_A 80 VDRVIIVETLKMPEFNNY-LLDNMLV---VYEYFKVEPVIVFNKIDLLNEE-EKKELE---------------------- 132 (302)
T ss_dssp CCEEEEEECSTTTTCCHH-HHHHHHH---HHHHTTCEEEEEECCGGGCCHH-HHHHHH----------------------
T ss_pred cCEEEEEEECCCCCCCHH-HHHHHHH---HHHhCCCCEEEEEEcccCCCcc-ccHHHH----------------------
Confidence 46789999997542 333 3444433 2234689999999999997543 211000
Q ss_pred HHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 227 NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 227 ~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
...+.....+ ..++++||++|+|+++|.+.+.
T Consensus 133 --~~~~~~~~~g-~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 133 --RWISIYRDAG-YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp --HHHHHHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred --HHHHHHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence 0011223334 3799999999999999988764
No 261
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.70 E-value=0.00026 Score=66.10 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=37.0
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
+..-..+.|.||+ |||||+|..++..++..|.+|++||.....
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 3455679999999 999999999999999999999999876544
No 262
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.67 E-value=1.2e-06 Score=82.21 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=41.4
Q ss_pred CCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCcc
Q 023298 115 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDL 193 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dl 193 (284)
..+.++||||...... ........++.+........++|++++....-...+ ..+..+...+.|+++|+||+|.
T Consensus 211 ~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l-----~~~d~l~~~~~~~~~v~nk~d~ 285 (368)
T 3h2y_A 211 EESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGL-----ARFDYVSGGRRAFTCHFSNRLT 285 (368)
T ss_dssp SSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTT-----EEEEEEESSSEEEEEEECTTSC
T ss_pred CCeEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcce-----EEEEEecCCCceEEEEecCccc
Confidence 3579999999865321 111122233333222234568888887321000010 0011222357899999999999
Q ss_pred ccch
Q 023298 194 VTNK 197 (284)
Q Consensus 194 l~~~ 197 (284)
+...
T Consensus 286 ~~~~ 289 (368)
T 3h2y_A 286 IHRT 289 (368)
T ss_dssp EEEE
T ss_pred cccc
Confidence 8654
No 263
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.65 E-value=5.7e-05 Score=63.43 Aligned_cols=40 Identities=8% Similarity=-0.042 Sum_probs=35.9
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
+..+.|+|+. |||||++..|+.+|...|.+|.+|..||..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 44 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC
Confidence 5678999999 999999999999999999999999999974
No 264
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.63 E-value=0.00012 Score=68.26 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=36.4
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
+.....++|.|++ +||||+|.+++..+++.|.+|++|++.-
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4455679999999 9999999999999999999999999954
No 265
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=97.62 E-value=0.0006 Score=60.62 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=34.3
Q ss_pred CceEEEEECCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 18 ALVIKCVFSPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 18 ~~~~~~viG~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
+++.++|.|+. |||||.+..|+.+|+++|++|..+ -|.++
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~f--KPv~~ 66 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC--KPVQT 66 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE--EEEEC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE--eeeec
Confidence 45679999997 999999999999999999999985 45443
No 266
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.60 E-value=0.00064 Score=60.87 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.1
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHH
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCE 43 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~ 43 (284)
..+.|+||. |||||+...|+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 358899999 999999999999764
No 267
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.58 E-value=5.2e-06 Score=77.82 Aligned_cols=76 Identities=14% Similarity=0.024 Sum_probs=41.6
Q ss_pred CCEEEEeCCCCccccc-ccchHHHHHHHHHhcCCCeEEEEEecCCCC--CCHHHHHHHHHHHHHHHHhcCCCEEEEecCC
Q 023298 115 DDYLVFDCPGQIELFT-HVPVLRNFVDHLKSRNFNVCAVYLLDSQFI--TDVTKFISGCMASLSAMVQLELPHVNILSKM 191 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~-~~~~~~~l~~~l~~~d~~~vil~LiDa~~~--~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~ 191 (284)
..+.++||||...... .+......++.+......+.++|++++... ...-.. +..+...+.|+++|+||.
T Consensus 212 ~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------l~~l~~~~~~~~~v~~k~ 284 (369)
T 3ec1_A 212 SGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-------LDYIKGGRRSFVCYMANE 284 (369)
T ss_dssp TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEEEEEEECTT
T ss_pred CCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-------EEEccCCCceEEEEecCC
Confidence 3579999999875321 111122233444211234578899988321 110000 112223568999999999
Q ss_pred ccccch
Q 023298 192 DLVTNK 197 (284)
Q Consensus 192 Dll~~~ 197 (284)
|.+...
T Consensus 285 d~~~~~ 290 (369)
T 3ec1_A 285 LTVHRT 290 (369)
T ss_dssp SCEEEE
T ss_pred cccccc
Confidence 998644
No 268
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.57 E-value=0.00011 Score=68.65 Aligned_cols=84 Identities=18% Similarity=0.283 Sum_probs=54.8
Q ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchh---hhhhhcCcchHHHHHHhhhcchhHHHH
Q 023298 149 VCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKK---EIEDYLNPESQFLLSELNQHMAPQFAK 225 (284)
Q Consensus 149 ~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~---~l~~~l~~~~~~l~~~l~~~~~~~~~~ 225 (284)
.++++++|+.... ..+... +.... .++|.++|+||+|++.+.. .+.+|+
T Consensus 73 ~lil~VvD~~d~~--~s~~~~----l~~~l-~~~piilV~NK~DLl~~~~~~~~~~~~l--------------------- 124 (369)
T 3ec1_A 73 ALVVNIVDIFDFN--GSFIPG----LPRFA-ADNPILLVGNKADLLPRSVKYPKLLRWM--------------------- 124 (369)
T ss_dssp CEEEEEEETTCSG--GGCCSS----HHHHC-TTSCEEEEEECGGGSCTTCCHHHHHHHH---------------------
T ss_pred cEEEEEEECCCCC--CchhhH----HHHHh-CCCCEEEEEEChhcCCCccCHHHHHHHH---------------------
Confidence 5899999997542 111111 11111 2789999999999986431 111221
Q ss_pred HHHHHHHHHhccCC--ceEEEEeccCcccHHHHHHHHHHhcC
Q 023298 226 LNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCIQ 265 (284)
Q Consensus 226 l~~~i~~~l~~~~~--~~~ipiSa~~~~~l~~Ll~~I~~~l~ 265 (284)
.+.+...++ ..++++||++|.|+++|++.|.+...
T Consensus 125 -----~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 125 -----RRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp -----HHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred -----HHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 223345555 48999999999999999999987653
No 269
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.54 E-value=0.00022 Score=66.77 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=57.8
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchh---hhhhhcCcchHHHHH
Q 023298 137 NFVDHLKSRNFNVCAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKK---EIEDYLNPESQFLLS 213 (284)
Q Consensus 137 ~l~~~l~~~d~~~vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~---~l~~~l~~~~~~l~~ 213 (284)
++++++... .+++++++|+.. +.. .+...+..+. .++|.++|+||+|++.+.. .+.+++
T Consensus 61 ~~l~~i~~~--~~~il~VvD~~d---~~~---~~~~~l~~~~-~~~p~ilV~NK~DL~~~~~~~~~~~~~l--------- 122 (368)
T 3h2y_A 61 RILNGIGKS--DALVVKIVDIFD---FNG---SWLPGLHRFV-GNNKVLLVGNKADLIPKSVKHDKVKHWM--------- 122 (368)
T ss_dssp HHHHHHHHS--CCEEEEEEETTS---HHH---HCCTTHHHHS-SSSCEEEEEECGGGSCTTSCHHHHHHHH---------
T ss_pred HHHHHHhcc--CcEEEEEEECCC---Ccc---cHHHHHHHHh-CCCcEEEEEEChhcCCcccCHHHHHHHH---------
Confidence 345555432 357999999963 322 1111111221 2789999999999975431 111111
Q ss_pred HhhhcchhHHHHHHHHHHHHHhccCC--ceEEEEeccCcccHHHHHHHHHHhc
Q 023298 214 ELNQHMAPQFAKLNKSLIELVDEYSM--VSFMPLDLRKESSIRYVLSQIDNCI 264 (284)
Q Consensus 214 ~l~~~~~~~~~~l~~~i~~~l~~~~~--~~~ipiSa~~~~~l~~Ll~~I~~~l 264 (284)
.+.....++ ..++++||++|.|+++|++.|.+..
T Consensus 123 -----------------~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 123 -----------------RYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp -----------------HHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------------HHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 122344555 3799999999999999999998764
No 270
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.50 E-value=9.7e-05 Score=61.49 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=34.6
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
.+..++++|++ |||||++..|+.++...|.++.++|.|.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 45668999999 9999999999999999999999998664
No 271
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.50 E-value=0.00035 Score=63.31 Aligned_cols=83 Identities=13% Similarity=0.170 Sum_probs=52.6
Q ss_pred CeEEEEEecCCCCC-CHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHhhhcchhHHHHH
Q 023298 148 NVCAVYLLDSQFIT-DVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSELNQHMAPQFAKL 226 (284)
Q Consensus 148 ~~vil~LiDa~~~~-~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l~~~~~~~~~~l 226 (284)
.+++++++|+.... +. ..+..++.. ....+.|.++|+||+|+..+. ...+..
T Consensus 85 ad~vilV~D~~~~~~s~-~~l~~~l~~---~~~~~~piilv~NK~DL~~~~-~v~~~~---------------------- 137 (301)
T 1u0l_A 85 VDQVILVVTVKMPETST-YIIDKFLVL---AEKNELETVMVINKMDLYDED-DLRKVR---------------------- 137 (301)
T ss_dssp CCEEEEEECSSTTCCCH-HHHHHHHHH---HHHTTCEEEEEECCGGGCCHH-HHHHHH----------------------
T ss_pred CCEEEEEEeCCCCCCCH-HHHHHHHHH---HHHCCCCEEEEEeHHHcCCch-hHHHHH----------------------
Confidence 46899999997543 32 234444332 223579999999999997543 221110
Q ss_pred HHHHHHHHhccCCceEEEEeccCcccHHHHHHHHH
Q 023298 227 NKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQID 261 (284)
Q Consensus 227 ~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~ 261 (284)
.+++..... ..++++||++|.|+++++..+.
T Consensus 138 --~~~~~~~~~--~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 138 --ELEEIYSGL--YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp --HHHHHHTTT--SCEEECCTTTCTTHHHHHHHHS
T ss_pred --HHHHHHhhh--CcEEEEECCCCcCHHHHHHHhc
Confidence 001111211 5799999999999999998765
No 272
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.50 E-value=0.0011 Score=61.52 Aligned_cols=41 Identities=7% Similarity=0.073 Sum_probs=35.7
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
|..-..++|.|++ +||||++.+++..++..|.+|+++.+.-
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 3444568999999 9999999999999999999999999863
No 273
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.49 E-value=0.00024 Score=66.04 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=36.8
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+..-..+.|.|++ |||||+|.+++..+...|.+|++++++..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 3455669999999 99999999999999999999999999753
No 274
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.49 E-value=8.5e-05 Score=61.37 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=31.1
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
..|+|+|++ |||||++..|++.+...|.++..++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 468999999 99999999999999988888888854
No 275
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.48 E-value=0.00027 Score=70.44 Aligned_cols=31 Identities=16% Similarity=0.040 Sum_probs=25.3
Q ss_pred cccccccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 11 GYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 11 ~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
|--.++.-|. +.|+||. |||||+...++..+
T Consensus 38 gv~~~l~lp~-iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 38 GVEQDLALPA-IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp SCCSSCCCCC-EECCCCTTSCHHHHHHHHHSCC
T ss_pred CCCCcccCCe-EEEECCCCChHHHHHHHHhCCC
Confidence 4444677777 9999999 99999999998853
No 276
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.48 E-value=0.0001 Score=65.29 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=34.8
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+|..|+++|++ |||||++..|+++|...|..++++|.|.-
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 35679999999 99999999999999988988887887753
No 277
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.34 E-value=8e-05 Score=66.50 Aligned_cols=84 Identities=12% Similarity=0.085 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCCH-HHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhhcCcchHHHHHHh
Q 023298 137 NFVDHLKSRNFNVCAVYLLDSQFITDV-TKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDYLNPESQFLLSEL 215 (284)
Q Consensus 137 ~l~~~l~~~d~~~vil~LiDa~~~~~~-~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~l~~~~~~l~~~l 215 (284)
.+.+.+.. .+++++++|+...... ...+. +. ++|.++|+||+|++... ..+.|.
T Consensus 14 ~~~~~l~~---~D~vl~VvDar~P~~~~~~~l~--------ll--~k~~iivlNK~DL~~~~-~~~~~~----------- 68 (262)
T 3cnl_A 14 QIKDLLRL---VNTVVEVRDARAPFATSAYGVD--------FS--RKETIILLNKVDIADEK-TTKKWV----------- 68 (262)
T ss_dssp HHHHHHTT---CSEEEEEEETTSTTTTSCTTSC--------CT--TSEEEEEEECGGGSCHH-HHHHHH-----------
T ss_pred HHHHHHhh---CCEEEEEeeCCCCCcCcChHHH--------hc--CCCcEEEEECccCCCHH-HHHHHH-----------
Confidence 34444543 4789999999743211 11111 11 89999999999998643 333333
Q ss_pred hhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHHHHHHHHHh
Q 023298 216 NQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRYVLSQIDNC 263 (284)
Q Consensus 216 ~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~Ll~~I~~~ 263 (284)
+.++..+ ..+ ++||.++.|++.|++.+.+.
T Consensus 69 ----------------~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 69 ----------------EFFKKQG-KRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp ----------------HHHHHTT-CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred ----------------HHHHHcC-CeE-EEECCCCcCHHHHHHHHHHh
Confidence 1122233 246 99999999999998877654
No 278
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.34 E-value=0.00015 Score=59.78 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=29.6
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
..++|.|++ |||||++..|++.+...|.+..++++|
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 469999999 999999999999998777555566543
No 279
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.32 E-value=0.00013 Score=60.32 Aligned_cols=46 Identities=2% Similarity=-0.091 Sum_probs=35.4
Q ss_pred hhhccccccc--CceEEEEECCC-CcHHHHHHHHHHHHH-hcCCceEEEe
Q 023298 8 LCKGYMSWLY--ALVIKCVFSPP-PNQSTYCSSLYRHCE-TVRRTMHIVN 53 (284)
Q Consensus 8 ~~~~~~~~~~--~~~~~~viG~~-sGKTT~~~~La~~l~-~~g~~v~iVd 53 (284)
.|+.|..+|. +...++++||+ +||||++..++..+. ..|.++..++
T Consensus 25 ~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 25 TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred HHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3556666654 34668999999 999999999999987 6777766644
No 280
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.28 E-value=0.00031 Score=58.98 Aligned_cols=40 Identities=5% Similarity=-0.063 Sum_probs=36.0
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
+..++|+|+. |||||++..|...+...|++|..+..||..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 4568999999 999999999999999999999999999865
No 281
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.28 E-value=0.00035 Score=66.79 Aligned_cols=47 Identities=13% Similarity=0.334 Sum_probs=28.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccchhhhhhh
Q 023298 150 CAVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNKKEIEDY 203 (284)
Q Consensus 150 vil~LiDa~~~~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~~~l~~~ 203 (284)
++.|++|+....++.+. .++. . +..+.|+|+|+||+|.+.+. ++..+
T Consensus 151 ~v~fI~d~~~~l~~~Di--eilk---~-L~~~~~vI~Vi~KtD~Lt~~-E~~~l 197 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL--VTMK---K-LDSKVNIIPIIAKADAISKS-ELTKF 197 (427)
T ss_dssp EEEEECCCC---CHHHH--HHHH---H-TCSCSEEEEEESCGGGSCHH-HHHHH
T ss_pred EEEEEeCCCCCCCHHHH--HHHH---H-HhhCCCEEEEEcchhccchH-HHHHH
Confidence 57778888655455442 1112 1 23678999999999998755 45443
No 282
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.26 E-value=0.00031 Score=59.53 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=37.1
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
...+.++.|+|+. |||||++..|+..+...|.++.+++.|.-.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 4566789999999 999999999999998888889999888643
No 283
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.00037 Score=59.83 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=40.7
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
||-+..| .+..-..++|+||+ |||||++.+++..++..|.+|++++.+..
T Consensus 12 LD~~l~g---Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 12 VDEILHG---GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp HHHHTTT---SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred HHHHcCC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 5555333 35556679999999 99999999999999888999999998764
No 284
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.20 E-value=0.00028 Score=61.93 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=33.9
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhc-----CCceEEEecCcC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETV-----RRTMHIVNLDPA 57 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-----g~~v~iVdLDPq 57 (284)
-.+|..|.|.|++ |||||+|..|++.+... ++++.++++|-=
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence 3467789999999 99999999999977643 678889999853
No 285
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.13 E-value=0.00057 Score=57.65 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=38.2
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
||-+..| .+..-..++++||+ |||||++..++. ..|.+|++++.+++.
T Consensus 9 LD~~l~G---gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~ 57 (220)
T 2cvh_A 9 LDSLLGG---GFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGF 57 (220)
T ss_dssp HHHHTTS---SBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCC
T ss_pred HHHhhcC---CCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCC
Confidence 5555543 34556679999999 999999999998 678899999998744
No 286
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.10 E-value=0.00067 Score=61.79 Aligned_cols=43 Identities=7% Similarity=0.000 Sum_probs=38.0
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
..++.++.++||. |||||++..|+.++...+.+|.+.+.|...
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4567889999999 999999999999999888899999888643
No 287
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.09 E-value=0.00094 Score=62.42 Aligned_cols=131 Identities=16% Similarity=0.251 Sum_probs=62.9
Q ss_pred CCEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCC-----C--HHHHHHHHHHHHHHHHh----cCCC
Q 023298 115 DDYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFIT-----D--VTKFISGCMASLSAMVQ----LELP 183 (284)
Q Consensus 115 ~~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~-----~--~~~~i~~~l~~l~~~~~----~~~p 183 (284)
..+.++||+||-.. . . .-...+ ....+++|++|.+... + ...+- ..+..+..+.+ .+.|
T Consensus 201 ~~l~i~Dt~Gq~~~-r--~---~w~~~f---~~~~~iIfv~dls~~dq~l~ed~~~n~~~-es~~~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 201 VPFKMVDVGGQRSE-R--K---RWFECF---DSVTSILFLVSSSEFDQVLMEDRQTNRLT-ESLNIFETIVNNRVFSNVS 270 (362)
T ss_dssp EEEEEEEECC-------------CTTSC---TTCCEEEEEEETTCTTCEETTEEEEEHHH-HHHHHHHHHHTCGGGTTSE
T ss_pred eEEEEEeccchhhh-h--h---hHHHHh---CCCCEEEEEEECccccccccccccccHHH-HHHHHHHHHhcchhhCCCC
Confidence 35789999998431 1 0 000111 2246899999997631 0 22332 11111222222 4689
Q ss_pred EEEEecCCccccchh---hhhhhcCc--ch-HHHHHHhhhcchhHHHHHH-HHHHHHHhc--cCCceEEEEeccCcccHH
Q 023298 184 HVNILSKMDLVTNKK---EIEDYLNP--ES-QFLLSELNQHMAPQFAKLN-KSLIELVDE--YSMVSFMPLDLRKESSIR 254 (284)
Q Consensus 184 ~IlVlNK~Dll~~~~---~l~~~l~~--~~-~~l~~~l~~~~~~~~~~l~-~~i~~~l~~--~~~~~~ipiSa~~~~~l~ 254 (284)
+|+|+||+|+...+- .+..+..+ +. ... ++ ..++. ....++... .....++..||++++|+.
T Consensus 271 iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~-~e--------~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~ 341 (362)
T 1zcb_A 271 IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCL-RD--------VQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIR 341 (362)
T ss_dssp EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCH-HH--------HHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHH
T ss_pred EEEEEEChhhhhhhccccchhhcCccccCCCCCH-HH--------HHHHHHHHHHHhhcccCCCceEEEEEecCCchhHH
Confidence 999999999964320 11111110 00 000 00 00110 000010010 123568899999999999
Q ss_pred HHHHHHHHhc
Q 023298 255 YVLSQIDNCI 264 (284)
Q Consensus 255 ~Ll~~I~~~l 264 (284)
.++..+.+.+
T Consensus 342 ~vF~~v~~~i 351 (362)
T 1zcb_A 342 LVFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.07 E-value=0.00057 Score=57.61 Aligned_cols=40 Identities=15% Similarity=0.031 Sum_probs=33.6
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
.++..++++||+ |||||+++.|+..+...|..+..+|-|.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 456779999999 9999999999999987787767777553
No 289
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.06 E-value=0.00066 Score=57.46 Aligned_cols=42 Identities=5% Similarity=0.017 Sum_probs=36.0
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+..-..++|+||+ |||||++..++..+...+.+|++++.+..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 3445668999999 99999999999988888889999998764
No 290
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.04 E-value=0.00053 Score=57.50 Aligned_cols=35 Identities=6% Similarity=-0.069 Sum_probs=31.6
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
..+++.||+ +||||++..++..+...+.++..+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 679999999 99999999999999988888888765
No 291
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.03 E-value=0.00055 Score=58.23 Aligned_cols=40 Identities=13% Similarity=-0.044 Sum_probs=34.1
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHH-hcCCceEEEecCc
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCE-TVRRTMHIVNLDP 56 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~-~~g~~v~iVdLDP 56 (284)
..+..++++|++ |||||++..|+..+. ..|.++..+|.|.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 445679999999 999999999999998 7888888888554
No 292
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.99 E-value=0.00092 Score=62.46 Aligned_cols=42 Identities=7% Similarity=0.005 Sum_probs=37.7
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
..++.++.++||. |||||++..|+.++...+.+|.+.+.|..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 4577889999999 99999999999999988889999988864
No 293
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.99 E-value=0.00041 Score=62.70 Aligned_cols=41 Identities=12% Similarity=-0.053 Sum_probs=33.9
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
++..|.|.||. |||||++..|++.+...|.++.+|++|--.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 56679999999 999999999999988888889999988644
No 294
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.99 E-value=0.001 Score=55.14 Aligned_cols=34 Identities=12% Similarity=-0.045 Sum_probs=29.0
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
.|++.|+. |||||+|..|++++...|.+++...-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 48899999 99999999999999988998876543
No 295
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.98 E-value=0.00077 Score=56.42 Aligned_cols=32 Identities=16% Similarity=0.053 Sum_probs=27.1
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEE
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHI 51 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~i 51 (284)
+..|+|.|++ |||||++..|++.+...| +++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEE
Confidence 4569999999 999999999999988766 5543
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.97 E-value=0.00081 Score=56.58 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=30.3
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEE
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIV 52 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iV 52 (284)
++..|+|+|++ |||||++..|++.+...+.++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 45679999999 999999999999998888887544
No 297
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.96 E-value=0.00024 Score=59.15 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=29.8
Q ss_pred cccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 11 GYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 11 ~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
+.++....+..|+++|++ |||||+|..|++.+. ..++|.|
T Consensus 4 ~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d 44 (199)
T 2bwj_A 4 GFMEDLRKCKIIFIIGGPGSGKGTQCEKLVEKYG-----FTHLSTG 44 (199)
T ss_dssp CHHHHHHHSCEEEEEECTTSSHHHHHHHHHHHHT-----CEEEEHH
T ss_pred ccccccCCCCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHH
Confidence 344455556779999999 999999999999763 3455554
No 298
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.95 E-value=0.0013 Score=55.89 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=35.1
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
..+...+.|+||. |||||++..|+..+...|.++-.|.+|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 4566779999999 99999999999998866777788887753
No 299
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.94 E-value=0.00091 Score=56.70 Aligned_cols=39 Identities=8% Similarity=0.174 Sum_probs=34.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
.+..+++.||+ +||||++..++..+...+.++..++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 45669999999 9999999999999998899999988754
No 300
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.91 E-value=0.0011 Score=54.77 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=28.3
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
.++++|++ |||||++..|++.+...|..++..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48899999 9999999999999988788766544
No 301
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.91 E-value=0.00098 Score=54.91 Aligned_cols=38 Identities=8% Similarity=-0.126 Sum_probs=31.5
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
...++++|+. |||||++..|+.++...|.+++.+|-|.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3458899999 9999999999999977788777776443
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.89 E-value=0.00075 Score=55.00 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=24.8
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
|..++++|++ |||||++..|++. .....+|+.|
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d 35 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAK----NPGFYNINRD 35 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence 4679999999 9999999999882 2234555553
No 303
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.88 E-value=0.00075 Score=58.70 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=25.6
Q ss_pred ccccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 14 SWLYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 14 ~~~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..+.++++|+|+||| |||||.|..|++.+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 346788899999999 99999999999965
No 304
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.84 E-value=0.00064 Score=57.42 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=35.7
Q ss_pred hcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 10 KGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 10 ~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
.|......++..+.|+|++ |||||++..|+..+. .+.+|+.|+-.
T Consensus 12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~ 57 (207)
T 2qt1_A 12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFF 57 (207)
T ss_dssp --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGB
T ss_pred ccccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccc
Confidence 4677778888889999999 999999999987432 57889988654
No 305
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.84 E-value=0.00082 Score=54.37 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.5
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHH
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..++|+|++ |||||++..|++.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999 99999999999865
No 306
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.83 E-value=0.0036 Score=58.22 Aligned_cols=129 Identities=9% Similarity=0.127 Sum_probs=65.8
Q ss_pred CEEEEeCCCCcccccccchHHHHHHHHHhcCCCeEEEEEecCCCCCC-------HHHHHHHHHHHHHHHHh----cCCCE
Q 023298 116 DYLVFDCPGQIELFTHVPVLRNFVDHLKSRNFNVCAVYLLDSQFITD-------VTKFISGCMASLSAMVQ----LELPH 184 (284)
Q Consensus 116 ~~viiDtPg~~e~~~~~~~~~~l~~~l~~~d~~~vil~LiDa~~~~~-------~~~~i~~~l~~l~~~~~----~~~p~ 184 (284)
.+-++||+||-..-... ...+ .....++|++|.+...+ ...+ ..+...+..+.+ .+.|+
T Consensus 194 ~l~iwDt~GQe~~r~~w------~~yf---~~a~~iIfV~dls~~d~~l~ed~~~nr~-~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 194 HFKMFDVGGQRSERKKW------IHCF---EGVTAIIFCVALSDYDLVLAEDEEMNRM-HESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEEEECCSGGGGGGG------GGGC---TTCSEEEEEEEGGGGGCEETTEEEEEHH-HHHHHHHHHHHTCGGGTTSEE
T ss_pred eEEEEeCCCchhhhHHH------HHHH---hcCCEEEEEEECccccccccccchhhhH-HHHHHHHHHHHcCccccCCcE
Confidence 46789999986421100 0112 22468999999875321 2232 222222222322 46899
Q ss_pred EEEecCCccccchh---hhhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhc------cCCceEEEEeccCcccHHH
Q 023298 185 VNILSKMDLVTNKK---EIEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDE------YSMVSFMPLDLRKESSIRY 255 (284)
Q Consensus 185 IlVlNK~Dll~~~~---~l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~------~~~~~~ipiSa~~~~~l~~ 255 (284)
|+|+||+|+...+- .+..+... .... ..+.+...-+...+.+ .....++..||++++|+..
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~--------~~g~--~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPE--------YAGS--NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTT--------CCSC--SCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccc--------cCCC--CCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHH
Confidence 99999999864220 11111110 0000 0000000000111111 1236789999999999999
Q ss_pred HHHHHHHhc
Q 023298 256 VLSQIDNCI 264 (284)
Q Consensus 256 Ll~~I~~~l 264 (284)
++..+.+.+
T Consensus 334 vF~~v~~~i 342 (353)
T 1cip_A 334 VFDAVTDVI 342 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877654
No 307
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.82 E-value=0.0013 Score=55.17 Aligned_cols=36 Identities=8% Similarity=-0.117 Sum_probs=30.4
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
++..|+|+|++ |||||++..|++.+...+.++.++.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45679999999 9999999999999988888775443
No 308
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.81 E-value=0.00095 Score=54.60 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=26.3
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
+..++++|++ |||||+++.|++.+ +...+.++.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 3569999999 99999999999854 3445555555
No 309
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.80 E-value=0.00096 Score=54.97 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=25.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
+|..|+++|++ |||||++..|++.+ |. .+||.|
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~---~~--~~i~~d 35 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY---GY--THLSAG 35 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence 35679999999 99999999999865 32 345655
No 310
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.76 E-value=0.0021 Score=55.13 Aligned_cols=42 Identities=7% Similarity=0.003 Sum_probs=34.4
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHH-hcCCceEEEecCc
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCE-TVRRTMHIVNLDP 56 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~-~~g~~v~iVdLDP 56 (284)
.+..-.++.++||. |||||++..++.... ..+..+.+++.+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 45666779999999 999999999997655 6778888888654
No 311
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.75 E-value=0.00088 Score=55.36 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.6
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
++..++++|++ |||||++..|++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46779999999 99999999999976
No 312
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.73 E-value=0.00099 Score=58.52 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=34.2
Q ss_pred hhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 7 LLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 7 ~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
-+-.++. ....|..++++|++ |||||++..|+..+. ..+.++|-|.
T Consensus 21 ~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~ 67 (253)
T 2p5t_B 21 SLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDS 67 (253)
T ss_dssp HHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGG
T ss_pred HHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHH
Confidence 3444554 45667889999999 999999999998653 3466677764
No 313
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.68 E-value=0.0017 Score=59.67 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=35.2
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHh--cCCceEEEecCcC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCET--VRRTMHIVNLDPA 57 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~--~g~~v~iVdLDPq 57 (284)
-.+|.++.|+||. |||||++..|+..+.. .+.+|.+|.+|..
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3467789999999 9999999999998874 3567899998864
No 314
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.67 E-value=0.0019 Score=52.24 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=23.8
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCET 44 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~ 44 (284)
.+..+++.||+ +||||++..+++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 35668999999 9999999999998876
No 315
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.66 E-value=0.0011 Score=55.77 Aligned_cols=26 Identities=15% Similarity=0.071 Sum_probs=22.5
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
.++..++++|++ |||||++..|++.+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 355679999999 99999999999976
No 316
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.66 E-value=0.0011 Score=55.67 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=26.2
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
|..++++|++ |||||++..|+..+ | ..++|.|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCc
Confidence 4579999999 99999999999976 2 44566554
No 317
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.65 E-value=0.0011 Score=54.64 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=21.4
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+..++++|++ |||||++..|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999 99999999999876
No 318
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.65 E-value=0.0014 Score=59.26 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=33.9
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcC--CceEEE-ecCcC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVR--RTMHIV-NLDPA 57 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g--~~v~iV-dLDPq 57 (284)
..++.++.|+|+. |||||++..|+..+...| +++..+ ..|+-
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 4567889999999 999999999999998754 445544 88864
No 319
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.0028 Score=54.24 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=38.1
Q ss_pred ehhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHH-HhcCCceEEEecCcC
Q 023298 4 YLDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHC-ETVRRTMHIVNLDPA 57 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l-~~~g~~v~iVdLDPq 57 (284)
-||-+..| -+..-..++|.|++ +||||+|.+++... ...|.+|+++.+.-.
T Consensus 18 ~LD~~l~G---Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 18 GFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred HHHHhhcC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 36666543 13445568999999 99999999988764 557889999988743
No 320
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.63 E-value=0.0016 Score=63.59 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=35.9
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
..|..|+++|.+ |||||++..|+.+|...+.++.++|.|-
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 466789999999 9999999999999998888898998874
No 321
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.63 E-value=0.0018 Score=58.28 Aligned_cols=44 Identities=11% Similarity=0.249 Sum_probs=33.4
Q ss_pred hhhcccc--cccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 8 LCKGYMS--WLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 8 ~~~~~~~--~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
+++.|++ ....|.++++.||+ +|||+++..+|+.+ |.+++.+++
T Consensus 23 ~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 23 ITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp HHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 3466654 33467889999999 99999999999977 566666653
No 322
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.59 E-value=0.0025 Score=56.93 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=34.9
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEecCc
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVNLDP 56 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVdLDP 56 (284)
+..-..++|+||+ +||||++.+++..++.. |.+|++++.+.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 4555679999999 99999999999998865 88999998764
No 323
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.59 E-value=0.0023 Score=53.96 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=32.0
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
.++.++.|+||. |||||+++.|+..+.. ++.+|+.|+...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~~ 44 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYYK 44 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcccc
Confidence 345678999999 9999999999997653 588898887543
No 324
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.58 E-value=0.0008 Score=56.66 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=30.3
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
.++|.|+. |||||++..|+.++...|.+|.++.-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 48899999 99999999999999988888887754
No 325
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.57 E-value=0.0013 Score=54.94 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=26.3
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
+..|+++|+. |||||++..|++.+ .|.++..++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 4569999999 99999999999976 355665543
No 326
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.57 E-value=0.0027 Score=57.83 Aligned_cols=40 Identities=5% Similarity=0.105 Sum_probs=35.6
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
|..-..++|.|++ +||||++.+++..++..|.+|+++.+.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 4555669999999 999999999999999888999999987
No 327
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.56 E-value=0.0013 Score=60.21 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=32.4
Q ss_pred CeEEEEEecCCCC-CCHHHHHHHHHHHHHHHHhcCCCEEEEecCCccccch
Q 023298 148 NVCAVYLLDSQFI-TDVTKFISGCMASLSAMVQLELPHVNILSKMDLVTNK 197 (284)
Q Consensus 148 ~~vil~LiDa~~~-~~~~~~i~~~l~~l~~~~~~~~p~IlVlNK~Dll~~~ 197 (284)
.+++++++|+... .+.+ ++..++. .....++|.++|+||+|+..+.
T Consensus 87 vD~v~~V~~~~~p~~~~~-~i~r~L~---~~~~~~~~~vivlnK~DL~~~~ 133 (307)
T 1t9h_A 87 VDQAVLVFSAVQPSFSTA-LLDRFLV---LVEANDIQPIICITKMDLIEDQ 133 (307)
T ss_dssp CCEEEEEEESTTTTCCHH-HHHHHHH---HHHTTTCEEEEEEECGGGCCCH
T ss_pred CCEEEEEEeCCCCCCCHH-HHHHHHH---HHHHCCCCEEEEEECCccCchh
Confidence 5788999999743 4444 5554432 2234689999999999998754
No 328
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.55 E-value=0.0021 Score=56.68 Aligned_cols=32 Identities=13% Similarity=0.370 Sum_probs=26.0
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
..++|+||+ |||||++..|+..+ + ..+|+.|-
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~---~--~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET---G--WPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---C--CCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC---C--CeEEeccH
Confidence 468999999 99999999999865 2 45677765
No 329
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.55 E-value=0.0024 Score=51.81 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=30.8
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
...++++||. +||||++..++..+...|+++..++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 3458899999 99999999999998877887877764
No 330
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.51 E-value=0.0022 Score=58.32 Aligned_cols=36 Identities=3% Similarity=-0.014 Sum_probs=32.5
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHH-hcCCceEEEec
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCE-TVRRTMHIVNL 54 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~-~~g~~v~iVdL 54 (284)
...+++.||+ +|||+++..++..+. ..|++|..++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 3568999999 999999999999999 89999988875
No 331
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.49 E-value=0.0023 Score=51.86 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=23.3
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHh
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCET 44 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~ 44 (284)
+..+++.||+ +||||++..+++.+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 5568999999 9999999999998876
No 332
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.49 E-value=0.0018 Score=53.46 Aligned_cols=37 Identities=16% Similarity=-0.015 Sum_probs=27.8
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
+.+...++++||+ |||||+++.|+.. .+...+.+|-|
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 4556779999999 9999999999874 33444556655
No 333
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.48 E-value=0.0027 Score=53.35 Aligned_cols=34 Identities=9% Similarity=0.106 Sum_probs=26.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
++..++++||. |||||+++.|+..+ | ...+|-|.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~ 62 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADA 62 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence 34569999999 99999999999876 4 35566554
No 334
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.45 E-value=0.0018 Score=56.59 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=27.5
Q ss_pred hhcccccccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 9 CKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 9 ~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
...|...-.+|..++++||+ |||||+|..|++.+
T Consensus 19 ~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 19 KRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44455545578889999999 99999999999865
No 335
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.45 E-value=0.0017 Score=53.29 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=25.3
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
|..++++|++ |||||++..|++.+. ..++|.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~-----~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG-----WVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC-----CEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC-----CeEeeHH
Confidence 5679999999 999999999998653 3455554
No 336
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.45 E-value=0.0023 Score=59.32 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=28.8
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+..++|+||. |||||++..|+..+. +.+|++|--
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 3578999999 999999999999653 788999864
No 337
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.44 E-value=0.0033 Score=51.29 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=26.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
....++++|++ |||||++..|+..+ | ..++|.|.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~ 41 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDF 41 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence 34569999999 99999999999865 3 45667664
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.43 E-value=0.0013 Score=56.38 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=21.7
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
...+|..++++|++ |||||++..|++.+
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp ----CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34556779999999 99999999999864
No 339
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.41 E-value=0.0023 Score=58.43 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=38.5
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhc------CCceEEEecCcC
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETV------RRTMHIVNLDPA 57 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~------g~~v~iVdLDPq 57 (284)
||-+..| .+.....+.|.|++ |||||+|.+++...+.. +.+|++|++.-.
T Consensus 96 LD~~L~G---Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 96 LDGLLAG---GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHTTT---SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred HHHhcCC---CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4444433 34556679999999 99999999999886654 789999998754
No 340
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.41 E-value=0.0076 Score=56.22 Aligned_cols=53 Identities=9% Similarity=0.328 Sum_probs=35.5
Q ss_pred hcCCCEEEEecCCccccchhh---hhhhcCcchHHHHHHhhhcchhHHHHHHHHHHHHHhccCCceEEEEeccCcccHHH
Q 023298 179 QLELPHVNILSKMDLVTNKKE---IEDYLNPESQFLLSELNQHMAPQFAKLNKSLIELVDEYSMVSFMPLDLRKESSIRY 255 (284)
Q Consensus 179 ~~~~p~IlVlNK~Dll~~~~~---l~~~l~~~~~~l~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~ipiSa~~~~~l~~ 255 (284)
..++|.++|+||+|+..+. . +..|. ..+...++ .++++||.++.|+++
T Consensus 158 ~~~~~~iivlNK~DL~~~~-~~~~~~~~~---------------------------~~y~~~G~-~v~~~Sa~~~~gl~~ 208 (358)
T 2rcn_A 158 TLQVEPLIVLNKIDLLDDE-GMDFVNEQM---------------------------DIYRNIGY-RVLMVSSHTQDGLKP 208 (358)
T ss_dssp HHTCEEEEEEECGGGCCHH-HHHHHHHHH---------------------------HHHHTTTC-CEEECBTTTTBTHHH
T ss_pred hcCCCEEEEEECccCCCch-hHHHHHHHH---------------------------HHHHhCCC-cEEEEecCCCcCHHH
Confidence 4688999999999998644 2 22222 22233343 588888888888888
Q ss_pred HHHHH
Q 023298 256 VLSQI 260 (284)
Q Consensus 256 Ll~~I 260 (284)
|...+
T Consensus 209 L~~~~ 213 (358)
T 2rcn_A 209 LEEAL 213 (358)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 341
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.41 E-value=0.0033 Score=52.84 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=30.0
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
+.+++.||+ |||||++..++..+...|++|+++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 458899998 9999999999988888899998874
No 342
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.41 E-value=0.0029 Score=62.20 Aligned_cols=41 Identities=15% Similarity=0.064 Sum_probs=36.0
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
...+..++++|++ |||||++..|++.|...|+++.++|.|-
T Consensus 369 ~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 3456779999999 9999999999999999999999998763
No 343
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.40 E-value=0.0023 Score=53.65 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=23.8
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+-..|..|+++|++ |||||+|..|++.+
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34556679999999 99999999999976
No 344
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.39 E-value=0.0021 Score=53.21 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.4
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
++..++++|++ |||||++..|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 55679999999 99999999999876
No 345
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.39 E-value=0.0063 Score=57.58 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=25.8
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
+|..++++|++ |||||++..|++.+ ....||.|.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 291 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDT 291 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccch
Confidence 56789999999 99999999998743 244555443
No 346
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.38 E-value=0.0025 Score=52.42 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=21.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
++..++++|++ |||||++..|++.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34569999999 99999999999865
No 347
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.37 E-value=0.004 Score=54.04 Aligned_cols=34 Identities=9% Similarity=0.119 Sum_probs=29.3
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEE
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIV 52 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iV 52 (284)
+...+++.|++ |||||++..|++++.. |.+++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 55679999999 9999999999999988 8777544
No 348
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.37 E-value=0.0037 Score=57.56 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=38.7
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHh------cCCceEEEecCcC
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCET------VRRTMHIVNLDPA 57 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~------~g~~v~iVdLDPq 57 (284)
||.+..| .+..-..+.|.|++ |||||+|.+++..... .+.+|++|+....
T Consensus 111 LD~~LgG---Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 111 FDKLLGG---GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHTTS---SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred HHHHhcC---CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 4544443 35566779999999 9999999999987554 4789999998753
No 349
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.37 E-value=0.0031 Score=53.85 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=37.2
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHh------cCCceEEEecCcC
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCET------VRRTMHIVNLDPA 57 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~------~g~~v~iVdLDPq 57 (284)
||-+..| .+..-..+.++||+ |||||++..++..... .+.+++.++....
T Consensus 13 LD~~l~g---gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 13 LDKLLQG---GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp HHHHTTT---SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred HHHhhcC---CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 5555433 35556679999999 9999999999986433 3678999988753
No 350
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.36 E-value=0.0023 Score=57.59 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=28.7
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
....|..++++||+ |||||++..|+..+. .....|+.|
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D 67 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDND 67 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Confidence 34567889999999 999999999988542 235566654
No 351
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.35 E-value=0.0024 Score=52.50 Aligned_cols=25 Identities=16% Similarity=0.095 Sum_probs=21.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
++..++++|++ |||||++..|++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 44568999999 99999999999876
No 352
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.32 E-value=0.0022 Score=51.44 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=16.8
Q ss_pred EEEEECCC-CcHHHHHHHH
Q 023298 21 IKCVFSPP-PNQSTYCSSL 38 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~L 38 (284)
.++|+||+ |||||++..|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 58999999 9999999999
No 353
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.32 E-value=0.003 Score=70.38 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=46.1
Q ss_pred hhhhhh-cccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 5 LDLLCK-GYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
||.+|. | ++..+..+++.||+ +||||+|.+++....++|.+|++++..-..
T Consensus 1415 LD~lLG~G---Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAG---GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSS---SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred HHHhcCCC---CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 788887 7 78899999999999 999999999999999999999999987543
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.29 E-value=0.004 Score=56.40 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=34.3
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHH--hcCCceEEEecCcCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCE--TVRRTMHIVNLDPAA 58 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~--~~g~~v~iVdLDPq~ 58 (284)
.++.++.|+||. |||||++..|+..+. -.+-++.+|++|-..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 566789999999 999999999999886 345568888888543
No 355
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.29 E-value=0.0018 Score=52.65 Aligned_cols=23 Identities=17% Similarity=0.103 Sum_probs=20.4
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHH
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..++++||+ |||||++..|+..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999 99999999999864
No 356
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.28 E-value=0.0031 Score=53.94 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=29.4
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHH-----hcC-CceEEEecC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCE-----TVR-RTMHIVNLD 55 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~-----~~g-~~v~iVdLD 55 (284)
|-+++++|++ |||||+|..+...+. +.| +++.+.|+|
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 3468999999 999999988766554 567 888788865
No 357
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.28 E-value=0.0032 Score=52.54 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=31.5
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
..+.|+|+. |||||++..|+..+...|.++-.|-+|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 468899999 999999999999999888888888887654
No 358
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.27 E-value=0.0051 Score=53.04 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=31.7
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
..|++.|+. |||||.+..|+++|...|.+|.... .|.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~-~p~ 44 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR-EPG 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE-SSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc-CCC
Confidence 458899999 9999999999999999999986653 454
No 359
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.26 E-value=0.0023 Score=51.86 Aligned_cols=23 Identities=13% Similarity=-0.063 Sum_probs=20.6
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHH
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..++++|++ |||||++..|++.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999 99999999999976
No 360
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.26 E-value=0.0041 Score=52.55 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=36.0
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHh------cCCceEEEecCc
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCET------VRRTMHIVNLDP 56 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~------~g~~v~iVdLDP 56 (284)
||-+..| .+..-.++.|+||. |||||++..++..+.. .+.+++.++...
T Consensus 14 LD~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 14 LDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp HHHHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred HHhHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 5555544 45666779999999 9999999999986554 245677777654
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.26 E-value=0.0023 Score=52.48 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=20.0
Q ss_pred EEEEECCC-CcHHHHHHHHHHHH
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l 42 (284)
.++++|++ |||||++..|++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999 99999999999865
No 362
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.25 E-value=0.0028 Score=52.62 Aligned_cols=33 Identities=3% Similarity=0.059 Sum_probs=25.4
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
+..++++|++ |||||++..|++.+ .| ..++|+|
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 3459999999 99999999999852 13 5566766
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.24 E-value=0.003 Score=53.79 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.4
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+..++++|++ |||||++..|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3459999999 99999999999976
No 364
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.23 E-value=0.0047 Score=59.13 Aligned_cols=43 Identities=5% Similarity=0.080 Sum_probs=36.7
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
|..-..++|.|+| +||||++.+++..++..|.+|+++.+.-..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~ 237 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK 237 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence 3444568999999 999999999999999889999999887444
No 365
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.23 E-value=0.0039 Score=55.27 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=30.5
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhc----------CCceEEEecC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETV----------RRTMHIVNLD 55 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~----------g~~v~iVdLD 55 (284)
+..-..++|+||+ |||||++..++..++.. +.+|++++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e 77 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE 77 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECC
Confidence 5556679999999 99999999999977642 3456666554
No 366
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.20 E-value=0.0023 Score=54.57 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=22.6
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCE 43 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~ 43 (284)
+|..|+|+|++ |||||++..|++.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45569999999 999999999999764
No 367
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.19 E-value=0.0028 Score=53.03 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=26.9
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
.+|..|+|+|++ |||||+|..|++.+ | ..+++.|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~---g--~~~i~~d 47 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY---S--FVHLSAG 47 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS---S--CEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---C--ceEEeHH
Confidence 456779999999 99999999999864 3 3556665
No 368
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.19 E-value=0.0024 Score=53.50 Aligned_cols=32 Identities=9% Similarity=-0.060 Sum_probs=25.3
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
..+.|+|+. |||||++..|+. + | +.+++.|--
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~---g--~~~i~~d~~ 34 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L---G--AYVLDADKL 34 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T---T--CEEEEHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C---C--CEEEEccHH
Confidence 358999999 999999999998 4 3 556676643
No 369
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.18 E-value=0.0021 Score=52.97 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=19.9
Q ss_pred EEEEECCC-CcHHHHHHHHHHHH
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l 42 (284)
.|+++|++ |||||++..|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999 99999999999865
No 370
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.18 E-value=0.0032 Score=54.65 Aligned_cols=25 Identities=20% Similarity=0.553 Sum_probs=22.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+|..++|+||. |||||+++.|++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46779999999 99999999999876
No 371
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.17 E-value=0.0062 Score=53.06 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=31.2
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
..+++.|++ +||||++..++..+..+|++|+++.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 458899998 9999999999999999999999993
No 372
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.16 E-value=0.0031 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.019 Sum_probs=20.0
Q ss_pred EEEEECCC-CcHHHHHHHHHHHH
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l 42 (284)
.|+++|++ |||||++..|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999 99999999999976
No 373
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.16 E-value=0.0035 Score=56.61 Aligned_cols=36 Identities=0% Similarity=-0.070 Sum_probs=31.2
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
+..+++.||+ +||||++..++..+...+.++..+|.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 3458999999 99999999999999887888888764
No 374
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.16 E-value=0.0058 Score=53.14 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=31.2
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHHhc-----CCceEEEecCc
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCETV-----RRTMHIVNLDP 56 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-----g~~v~iVdLDP 56 (284)
.+.++.++.|+||. |||||+++.|+..+... .+++.+++.|+
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 34566779999999 99999999999977322 34566777774
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.13 E-value=0.0033 Score=53.58 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.8
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHH
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..|+++|++ |||||++..|++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999 99999999999977
No 376
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.11 E-value=0.0028 Score=52.65 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=26.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
+|..+.|+|+. |||||++..|++. | ..++|.|.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d~ 40 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLDA 40 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC----C--CEEEcccH
Confidence 46779999999 9999999999883 4 45677774
No 377
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.11 E-value=0.0025 Score=53.76 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=23.6
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+...+..++|+||+ |||||++..|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45566779999999 99999999999865
No 378
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.10 E-value=0.0067 Score=57.92 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=35.2
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHh-cCCceEEEecCc
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCET-VRRTMHIVNLDP 56 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~-~g~~v~iVdLDP 56 (284)
+..-..++|.|++ +||||++.+++..++. .|.+|+++.+.-
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4455669999999 9999999999999986 588999999763
No 379
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.10 E-value=0.0069 Score=51.44 Aligned_cols=34 Identities=9% Similarity=0.240 Sum_probs=31.8
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
+.++++||. |||||.+..++.-+..+|++|+++.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 579999998 9999999999999999999999996
No 380
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.10 E-value=0.0022 Score=52.54 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=18.3
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+|..++++|++ |||||++..|++.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35679999999 99999999998864
No 381
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.09 E-value=0.005 Score=60.11 Aligned_cols=49 Identities=8% Similarity=-0.102 Sum_probs=39.6
Q ss_pred hhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHh-c-CCceEEEecCc
Q 023298 8 LCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCET-V-RRTMHIVNLDP 56 (284)
Q Consensus 8 ~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~-~-g~~v~iVdLDP 56 (284)
|-+.|-..+.+...++++|.+ |||||+++.|++.|.. . ++.+.++|.|-
T Consensus 384 Lr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 384 LRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred HHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 445555556667889999999 9999999999999986 5 47788888876
No 382
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.08 E-value=0.0067 Score=57.74 Aligned_cols=40 Identities=10% Similarity=0.167 Sum_probs=34.5
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHh-cCCceEEEecC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCET-VRRTMHIVNLD 55 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~-~g~~v~iVdLD 55 (284)
|..-..++|.|++ +||||+|.+++...+. .|.+|+++.+.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3444568999999 9999999999999887 58899999986
No 383
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.07 E-value=0.0071 Score=53.07 Aligned_cols=40 Identities=8% Similarity=-0.001 Sum_probs=32.6
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCc-eEEEecCcCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRT-MHIVNLDPAA 58 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~-v~iVdLDPq~ 58 (284)
++..|++.|+. |||||.+..|+++|...|.+ +.+. -.|+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~-rep~~ 67 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT-REPGG 67 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE-ESSCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee-cCCCC
Confidence 45569999999 99999999999999999998 5444 35643
No 384
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.06 E-value=0.0039 Score=53.53 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEECCC-CcHHHHHHHHHHHH
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l 42 (284)
.++++||| |||||.|..|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999 99999999999965
No 385
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.03 E-value=0.0079 Score=52.38 Aligned_cols=41 Identities=7% Similarity=-0.007 Sum_probs=35.0
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHh-cCCceEEEecCcCCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCET-VRRTMHIVNLDPAAE 59 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~-~g~~v~iVdLDPq~~ 59 (284)
+..|++.|+. |||||.+..|+++|.. .|++|.++--.|+.+
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t 63 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGT 63 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCC
Confidence 4558899999 9999999999999999 999988755677643
No 386
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.02 E-value=0.0022 Score=55.56 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=23.6
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
.-++.++++.||| +||||+|..++..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3345689999999 99999999999987
No 387
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.99 E-value=0.0046 Score=51.23 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.8
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHH
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCE 43 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~ 43 (284)
.|+++|+. |||||++..|++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 48899999 999999999999874
No 388
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.98 E-value=0.0066 Score=60.02 Aligned_cols=38 Identities=8% Similarity=-0.024 Sum_probs=33.4
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcC-CceEEEecC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVR-RTMHIVNLD 55 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g-~~v~iVdLD 55 (284)
++..|+++|++ |||||++..|++.|...| +++..+|-|
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 45779999999 999999999999999888 888888754
No 389
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0038 Score=60.08 Aligned_cols=42 Identities=12% Similarity=0.134 Sum_probs=34.5
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCC-ceEEEecCcCCC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRR-TMHIVNLDPAAE 59 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~-~v~iVdLDPq~~ 59 (284)
.|++ +.|+||. |||||+++.|+.++...+. +++.+|.||...
T Consensus 137 ~Ge~-v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~ 180 (460)
T 2npi_A 137 EGPR-VVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQP 180 (460)
T ss_dssp SCCC-EEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSC
T ss_pred CCCE-EEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCC
Confidence 4555 9999999 9999999999999876555 667889888654
No 390
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.94 E-value=0.0047 Score=51.09 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=28.3
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
.+++.||+ +||||++..+++.+...+..+.++.++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 38999999 9999999999999876665554554443
No 391
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.93 E-value=0.0058 Score=61.08 Aligned_cols=38 Identities=8% Similarity=-0.123 Sum_probs=32.8
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
++..|+++|++ |||||++..|++.|...|.+++.+|-|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 34569999999 999999999999998889888887644
No 392
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.93 E-value=0.0051 Score=56.65 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=28.2
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+..++|+||. |||||++..||+.+ ...+||.|--
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 3469999999 99999999999854 3678898864
No 393
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.92 E-value=0.007 Score=52.81 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=30.2
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhc----CCceEEEecCcC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETV----RRTMHIVNLDPA 57 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~----g~~v~iVdLDPq 57 (284)
+...|++-|+. |||||.+..|+++|... |.+|.+.- .|+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r-ep~ 67 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR-EPG 67 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE-SSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec-CCC
Confidence 34458999999 99999999999999988 99886553 454
No 394
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.92 E-value=0.011 Score=50.53 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=36.0
Q ss_pred CceEEEEECCCCcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 18 ALVIKCVFSPPPNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 18 ~~~~~~viG~~sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
+..+++..|+|.||||.+..++-.++.+|+||+++-..++.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~ 68 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT 68 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC
Confidence 44557777777999999999999999999999999999864
No 395
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.85 E-value=0.0073 Score=55.95 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=29.9
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
++..++|+||. |||||++..||+.+ ..-+||.|--.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~q 75 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKMQ 75 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSST
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEcccccc
Confidence 34579999999 99999999999843 46799999864
No 396
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.84 E-value=0.0078 Score=57.70 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=32.6
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
.++..|+++|.+ |||||++..|+..+...+.++..+|.|
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d 76 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 76 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence 356679999999 999999999999998777777777744
No 397
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.82 E-value=0.0054 Score=54.60 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=25.0
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
|..++++|++ |||||++..|++.+ . ...+|+.|
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~--~--~~~~i~~D 35 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN--P--GFYNINRD 35 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS--T--TEEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC--C--CcEEeccc
Confidence 4569999999 99999999998832 1 34556555
No 398
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.79 E-value=0.012 Score=53.54 Aligned_cols=42 Identities=17% Similarity=-0.013 Sum_probs=34.6
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhc-C-CceEEEecCcC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETV-R-RTMHIVNLDPA 57 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g-~~v~iVdLDPq 57 (284)
..++.++.|+||. |||||++..|+..+... | +++.+|-.|+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 4667789999999 99999999999998753 4 56888887764
No 399
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.78 E-value=0.0061 Score=58.84 Aligned_cols=41 Identities=15% Similarity=0.023 Sum_probs=35.2
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEecCc
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVNLDP 56 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVdLDP 56 (284)
+..-..++|.|++ +||||++.+++..++.. |.+|+++.+.-
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 4445568999999 99999999999999886 99999999854
No 400
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.77 E-value=0.01 Score=54.55 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=28.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
++..++|+||. |||||++..|++.+ ...+|+.|.-
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcc
Confidence 35568999999 99999999999853 4678888875
No 401
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.76 E-value=0.0063 Score=51.34 Aligned_cols=21 Identities=10% Similarity=0.222 Sum_probs=19.2
Q ss_pred EEEECCC-CcHHHHHHHHHHHH
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l 42 (284)
++|+|++ |||||+|..|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999 99999999998865
No 402
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.76 E-value=0.0088 Score=55.16 Aligned_cols=35 Identities=6% Similarity=0.075 Sum_probs=31.1
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhc--CCceEEEecC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETV--RRTMHIVNLD 55 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~--g~~v~iVdLD 55 (284)
.+.|.||+ +||||+|..++..+++. |.+|+.||.-
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 48899999 99999999999998876 8899999853
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.75 E-value=0.0066 Score=52.27 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCE 43 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~ 43 (284)
.+..++++|++ |||||++..|++.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44569999999 999999999999763
No 404
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.75 E-value=0.0052 Score=51.56 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=25.5
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+..+.++|+. |||||++..|+. .| ..++|.|.-
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~----lg--~~~id~d~~ 35 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD----LG--VPLVDADVV 35 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT----TT--CCEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH----CC--CcccchHHH
Confidence 3568999999 999999999987 34 345677654
No 405
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.75 E-value=0.011 Score=53.79 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=32.1
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEecCcCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVNLDPAA 58 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVdLDPq~ 58 (284)
.++|.||+ +||||++..++..+... +..++.+|+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 79999999 99999999999988776 6788888865443
No 406
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.74 E-value=0.0061 Score=51.65 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=19.7
Q ss_pred EEEECCC-CcHHHHHHHHHHHH
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l 42 (284)
++|+|++ |||||++..|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999 99999999999976
No 407
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.70 E-value=0.0092 Score=54.49 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=32.0
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhc--------CCceEEEecC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETV--------RRTMHIVNLD 55 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~--------g~~v~iVdLD 55 (284)
.+..+++.||+ +||||++..+++.+... +..++.+|+-
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 35679999999 99999999999998765 7777777763
No 408
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.66 E-value=0.0054 Score=48.97 Aligned_cols=35 Identities=9% Similarity=0.068 Sum_probs=27.9
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
.-+++.|++ +|||+++..++......+..+. +|+.
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 348999999 9999999999987666666655 6653
No 409
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.66 E-value=0.0096 Score=52.87 Aligned_cols=38 Identities=8% Similarity=0.054 Sum_probs=32.8
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
..+++.||+ +||||++..++..+...+.++..+|+..-
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 368999999 99999999999999877778888887543
No 410
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.62 E-value=0.014 Score=50.27 Aligned_cols=36 Identities=6% Similarity=0.031 Sum_probs=28.6
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
..+..+++.||+ +||||++..++..+ +.++..++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~ 73 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGA 73 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechH
Confidence 456779999999 99999999999865 5566666553
No 411
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.61 E-value=0.0092 Score=50.55 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=26.9
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
-..+.++|+. |||||++..|++.+ | ..+||.|--
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHH
Confidence 4568899999 99999999999854 4 566777644
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.61 E-value=0.0091 Score=50.57 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=25.8
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
++..+.|+|+. |||||++..|+. .| ..++|.|
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~----lg--~~~id~D 35 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD----LG--INVIDAD 35 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH----TT--CEEEEHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH----cC--CEEEEcc
Confidence 45679999999 999999999987 24 4567776
No 413
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.59 E-value=0.0088 Score=54.12 Aligned_cols=42 Identities=2% Similarity=-0.062 Sum_probs=33.2
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHH------------hcC----CceEEEecCcC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCE------------TVR----RTMHIVNLDPA 57 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~------------~~g----~~v~iVdLDPq 57 (284)
+.....+.|.|++ |||||+|.+++...+ ..| .+|++|++.-.
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 4556779999999 999999999998643 234 68999987654
No 414
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.58 E-value=0.0086 Score=48.49 Aligned_cols=26 Identities=8% Similarity=-0.038 Sum_probs=21.3
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCE 43 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~ 43 (284)
.+..++++|++ |||||.+..|++.|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35578999999 999999999998653
No 415
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.57 E-value=0.012 Score=53.38 Aligned_cols=39 Identities=3% Similarity=-0.029 Sum_probs=32.8
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhc---CCceEEEecCc
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETV---RRTMHIVNLDP 56 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~---g~~v~iVdLDP 56 (284)
.+..++|.||+ +||||++..++..+... +..++.+|+.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 45679999999 99999999999988765 77888888654
No 416
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.55 E-value=0.015 Score=49.35 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=30.4
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
|++=|+- |||||.+..|+++|...|++|...- -|+.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr-eP~~ 39 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR-EPGG 39 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCC
Confidence 6677998 9999999999999999999987764 3543
No 417
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.55 E-value=0.01 Score=53.91 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=32.7
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhc------CCceEEEecCcC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETV------RRTMHIVNLDPA 57 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~------g~~v~iVdLDPq 57 (284)
..+..++|.||+ +||||++..+++.+... +..++.+|..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 445679999999 99999999999998765 666777776443
No 418
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.55 E-value=0.0058 Score=50.89 Aligned_cols=25 Identities=8% Similarity=0.139 Sum_probs=21.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
....+.++||. |||||++..|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44568999999 99999999999865
No 419
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.53 E-value=0.0068 Score=51.22 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=18.9
Q ss_pred EEEECCC-CcHHHHHHHHHHHH
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l 42 (284)
++|+|++ |||||+|..|++.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999 99999999998753
No 420
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.52 E-value=0.014 Score=53.50 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=29.6
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
.|..++|+||. |||||++..|++.+ ..-+|+.|.-.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~q 45 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDSAL 45 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCTTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccccc
Confidence 35678999999 99999999999863 46789998743
No 421
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.51 E-value=0.013 Score=52.01 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=25.1
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRR 47 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~ 47 (284)
+..+++.||+ +||||++..++..+...+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3459999999 9999999999999987654
No 422
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.51 E-value=0.0069 Score=51.15 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=25.5
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
++|+|++ |||||++..|+.. |.+++.|+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 7899999 9999999998863 67788877643
No 423
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.47 E-value=0.0094 Score=51.06 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=20.2
Q ss_pred EEEEECCC-CcHHHHHHHHHHHH
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l 42 (284)
.++++|++ |||||++..|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999 99999999999976
No 424
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.47 E-value=0.0095 Score=53.23 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=28.0
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
.+|..|.|+|++ |||||++..|+. .| ..+||.|.-
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~----lg--~~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN----LG--AYIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH----HT--CEEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH----CC--CcEEehhHH
Confidence 457789999999 999999999984 24 456888764
No 425
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.45 E-value=0.013 Score=54.17 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=33.2
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHHhc------CCceEEEecCc
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCETV------RRTMHIVNLDP 56 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~------g~~v~iVdLDP 56 (284)
.+..-.++.|+||+ |||||+|..++..++.. |-+|+.||...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 35566779999999 99999999999986432 35788898754
No 426
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.45 E-value=0.016 Score=50.39 Aligned_cols=33 Identities=6% Similarity=0.152 Sum_probs=26.1
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
-|..++++||+ +||||+++.++..+ +.++..+|
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~ 77 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTIS 77 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEEC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 36679999999 99999999999865 44555454
No 427
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.44 E-value=0.0099 Score=50.36 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=20.6
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHH
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..+.++||+ |||||+++.|+..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999 99999999999865
No 428
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.41 E-value=0.02 Score=49.34 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=30.1
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCC-ceEEEecCcCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRR-TMHIVNLDPAA 58 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~-~v~iVdLDPq~ 58 (284)
.|++-|+. |||||.+..|+++|...|. .|.+. -.|++
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~-rep~~ 43 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT-REPGG 43 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE-ESSCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee-eCCCC
Confidence 48899999 9999999999999999998 55433 44644
No 429
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.39 E-value=0.014 Score=51.50 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=29.0
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
.+..+++.||+ +||||++..++..+ +.++..+|...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~ 85 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATK 85 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchh
Confidence 35668999999 99999999999977 56677777543
No 430
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.36 E-value=0.01 Score=50.24 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=21.4
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
++..++++||. |||||++..|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45568999999 99999999998854
No 431
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.33 E-value=0.011 Score=49.27 Aligned_cols=30 Identities=10% Similarity=0.115 Sum_probs=24.2
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
.+.|.|+. |||||++..|+..+. ..++|.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg-----~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG-----VPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-----CCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC-----Cceeccc
Confidence 68999999 999999999998653 4455655
No 432
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.32 E-value=0.019 Score=51.48 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=19.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYR 40 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~ 40 (284)
.+..++++|.+ |||||+...|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCceEEEEecCCCchHHHHHHHhc
Confidence 45679999999 999999998873
No 433
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.32 E-value=0.012 Score=56.09 Aligned_cols=36 Identities=3% Similarity=-0.086 Sum_probs=29.7
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhc--CCceEEEec
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETV--RRTMHIVNL 54 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~--g~~v~iVdL 54 (284)
+..+++.||+ +||||++..++..+... +.++..++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4568999999 99999999999998765 666666654
No 434
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.29 E-value=0.0075 Score=55.67 Aligned_cols=33 Identities=6% Similarity=-0.025 Sum_probs=28.6
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
...+++.||+ +||||++..++.. .|.+|++|++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 3457899999 9999999999886 6778999988
No 435
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.27 E-value=0.019 Score=55.84 Aligned_cols=47 Identities=13% Similarity=0.198 Sum_probs=37.1
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
||-++.| .+..-.++.|+|++ |||||++..++..+...|.+++.+..
T Consensus 270 ld~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 270 LDEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp HHHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred HHHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3444444 55666679999999 99999999999988878888877764
No 436
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.26 E-value=0.016 Score=50.23 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=22.9
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+.-+.+++++||+ +||||+++.++..+
T Consensus 46 ~~~~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 46 ARIPKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3446679999999 99999999999865
No 437
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.22 E-value=0.014 Score=55.25 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=35.5
Q ss_pred hhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHh------cCCceEEEecCc
Q 023298 5 LDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCET------VRRTMHIVNLDP 56 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~------~g~~v~iVdLDP 56 (284)
||-+..| -+..-.++.|+||+ |||||||..++..... .+.++++|+...
T Consensus 167 LD~lLgG---GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 167 LDTLLGG---GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp HHHHTTT---SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHHhcC---CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4544433 34555679999999 9999999998866543 356799998764
No 438
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.21 E-value=0.013 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.9
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+|..+.|.||+ |||||++..|++.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56679999999 99999999999876
No 439
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.17 E-value=0.025 Score=49.08 Aligned_cols=35 Identities=9% Similarity=0.033 Sum_probs=32.1
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
-+..++.||. |||||.+..++.-+..+|++|+++.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3678899998 9999999999999999999999986
No 440
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.15 E-value=0.013 Score=51.24 Aligned_cols=37 Identities=8% Similarity=-0.070 Sum_probs=30.6
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
+..+++.|++ +|||+++..++..+...+.++..||+-
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 3458999999 999999999999877666777777764
No 441
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.11 E-value=0.014 Score=48.24 Aligned_cols=23 Identities=4% Similarity=0.001 Sum_probs=20.3
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHH
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..++++||. |||||++..|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999 99999999999864
No 442
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.09 E-value=0.02 Score=50.24 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=27.9
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
..+..+++.||+ +||||++..++..+ +.++..++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~ 84 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVG 84 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 456789999999 99999999998854 556666654
No 443
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.08 E-value=0.021 Score=51.86 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=28.1
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
..++.+++.||+ +||||++..++..+ .+..++.|+.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~ 79 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 79 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEEC
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEh
Confidence 345789999999 99999999999875 2455555554
No 444
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.05 E-value=0.023 Score=48.56 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=28.1
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
.|++=|+- |||||.|..|+++|. +|.+|... --|+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~-~eP~~ 40 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT-REPGG 40 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE-ESSTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe-eCCCC
Confidence 37788998 999999999999996 47777654 34543
No 445
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.03 E-value=0.024 Score=52.64 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=31.9
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
...+|+||. |||||+++.+...+...|.+++++| |..+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D--~~~~ 74 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID--PERE 74 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE--SSCC
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe--CCcC
Confidence 348999999 9999999999998888888888874 5554
No 446
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.00 E-value=0.015 Score=48.06 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.8
Q ss_pred eEEEEECCC-CcHHHHHHHHHH
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYR 40 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~ 40 (284)
.+++++||. |||||+++.|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 357899999 999999999986
No 447
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.99 E-value=0.016 Score=48.04 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=26.5
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHh-cCCceEEEecCcC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCET-VRRTMHIVNLDPA 57 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~-~g~~v~iVdLDPq 57 (284)
.++.++||. |||||++..|+..+.. .|..+....-.|.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~ 41 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPR 41 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCC
Confidence 457899999 9999999999987652 3444443333333
No 448
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.021 Score=54.50 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=28.4
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
..|+++++.||| +|||++++++|..+ |...+.|+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~ 239 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNG 239 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Confidence 468899999999 99999999999865 455555543
No 449
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.94 E-value=0.033 Score=51.86 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=30.7
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEe
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVN 53 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVd 53 (284)
..+...++|+||. |||||+...|+.++... ..++.+++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 3445568999999 99999999999998875 55676766
No 450
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.90 E-value=0.024 Score=49.99 Aligned_cols=27 Identities=7% Similarity=0.054 Sum_probs=22.8
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+.-+.+++++||+ +||||+++.++..+
T Consensus 70 ~~~~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 70 ARIPKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence 3445679999999 99999999999865
No 451
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.89 E-value=0.018 Score=56.73 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=34.1
Q ss_pred ccccCceEEEEECCC-CcHHHHHHHHHHHHHhcC-CceEEEecCc
Q 023298 14 SWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVR-RTMHIVNLDP 56 (284)
Q Consensus 14 ~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g-~~v~iVdLDP 56 (284)
..+.+...++++|+. |||||+++.|+..+...+ +++.++|-|.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 345567789999999 999999999999987543 5676777664
No 452
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.89 E-value=0.043 Score=48.59 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=30.7
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEec
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVNL 54 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVdL 54 (284)
+..--.+.|+||. |||||+...++..+... ..++.+..-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 5555678999999 99999999999998765 556666553
No 453
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.85 E-value=0.024 Score=62.49 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=39.0
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
+.....++|.|++ +||||++.+++..++..|.+|+++++.-...
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ 773 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 773 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 6677789999999 9999999999999999999999999876543
No 454
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.85 E-value=0.028 Score=49.64 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=26.6
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
.+..+++.||+ +||||++..++..+ +.....++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 87 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISA 87 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEES
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeH
Confidence 36789999999 99999999999854 445555554
No 455
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.82 E-value=0.029 Score=49.87 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=23.1
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+.-|.+++++||+ +||||+++.++..+
T Consensus 41 l~~~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 41 LVTPAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 4556779999999 99999999999854
No 456
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.82 E-value=0.019 Score=47.62 Aligned_cols=24 Identities=8% Similarity=0.193 Sum_probs=20.7
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..++.++||. |||||++..|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458899999 99999999999864
No 457
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.81 E-value=0.026 Score=51.89 Aligned_cols=40 Identities=13% Similarity=-0.052 Sum_probs=32.1
Q ss_pred CceEEEE--ECCC-CcHHHHHHHHHHHHHhc------CCceEEEecCcC
Q 023298 18 ALVIKCV--FSPP-PNQSTYCSSLYRHCETV------RRTMHIVNLDPA 57 (284)
Q Consensus 18 ~~~~~~v--iG~~-sGKTT~~~~La~~l~~~------g~~v~iVdLDPq 57 (284)
.+..++| .||+ +||||++..+++.+... +..++.+++.+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA 97 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence 4566778 8999 99999999999988764 567888887544
No 458
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.78 E-value=0.029 Score=53.43 Aligned_cols=32 Identities=6% Similarity=0.060 Sum_probs=28.3
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCC-ceEEE
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRR-TMHIV 52 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~-~v~iV 52 (284)
.++|.|+| +||||++..++.+|...|. +++++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 68999999 9999999999999998887 56655
No 459
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.026 Score=54.00 Aligned_cols=34 Identities=6% Similarity=0.080 Sum_probs=27.6
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
..|+++++.||| +|||++++++|..+ |.+.+.|+
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~ 247 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSP 247 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEe
Confidence 457899999999 99999999999964 45555554
No 460
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.66 E-value=0.027 Score=50.49 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=22.9
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..+.++++.||+ +||||++..++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999 99999999999864
No 461
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.65 E-value=0.023 Score=47.28 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=20.8
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHH
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCE 43 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~ 43 (284)
.+.++||. |||||+.+.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 37899999 999999999999884
No 462
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.64 E-value=0.031 Score=55.12 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=30.4
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEE
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIV 52 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iV 52 (284)
...++|.|+| +||||++..+...+...|.+|+++
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3458899999 999999999999999999888876
No 463
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.63 E-value=0.038 Score=48.34 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=27.0
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
..+..+++.||+ +||||++..++.. .+.+++.+|
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~---~~~~~~~i~ 96 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE---SNFPFIKIC 96 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH---HTCSEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH---hCCCEEEEe
Confidence 456789999999 9999999999996 355555554
No 464
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.63 E-value=0.037 Score=50.03 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=26.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
.+..+++.||+ +|||+++..++..+ +.+++.|+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~ 84 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSS 84 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence 46789999999 99999999998864 455555543
No 465
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.60 E-value=0.023 Score=52.17 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=26.6
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
.+..+++.||+ +||||++..+++.+ +.+.+.+|.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 45669999999 99999999999976 455555543
No 466
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.58 E-value=0.034 Score=51.24 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=26.5
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
..+..+++.||+ +||||++..++..+ +.+++.|+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~ 116 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVS 116 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEee
Confidence 345679999999 99999999999976 44455444
No 467
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.03 Score=53.49 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=27.9
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
..|+++++.||| +|||++++++|..+ |...+.|+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~ 248 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAA 248 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 358899999999 99999999999854 455555543
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.53 E-value=0.019 Score=49.48 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=22.7
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHH
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCE 43 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~ 43 (284)
+|..|++.|+. |||||++..|+++|.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35679999999 999999999999874
No 469
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.50 E-value=0.021 Score=48.09 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.0
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHH
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCE 43 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~ 43 (284)
..+.|+||. |||||++..|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 458999999 999999999998764
No 470
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.49 E-value=0.037 Score=50.92 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=28.3
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
..+..+++.||+ +||||++..++..+ +..++.||.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~ 150 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISA 150 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEeh
Confidence 356789999999 99999999998854 566666665
No 471
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.48 E-value=0.036 Score=52.52 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=27.1
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
+..++|.||. |||||++..|+..+. ..+|+.|-
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~-----~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN-----GEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT-----EEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC-----CeEeecCc
Confidence 3468899999 999999999999763 35788876
No 472
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.45 E-value=0.027 Score=46.88 Aligned_cols=26 Identities=4% Similarity=-0.110 Sum_probs=22.6
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhc
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETV 45 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~ 45 (284)
..++|.||+ +||||++..+++.+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 468999999 99999999999987643
No 473
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.42 E-value=0.044 Score=50.89 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=28.6
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhc-CCceEEEecCcC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETV-RRTMHIVNLDPA 57 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~-g~~v~iVdLDPq 57 (284)
.++|+||. |||||+...++..+... +.+++.+. ||-
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~ 162 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPI 162 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcH
Confidence 68899999 99999999999998875 55555443 554
No 474
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.37 E-value=0.03 Score=51.53 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=27.7
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
+..+++.||+ +||||++..++..+ +.++..+|.-
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~ 106 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDAT 106 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecch
Confidence 4458999999 99999999999876 5667777653
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.36 E-value=0.019 Score=48.38 Aligned_cols=33 Identities=15% Similarity=0.142 Sum_probs=25.3
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
|..+.++|+. |||||++..|+..+ | ..++|.|-
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~---g--~~~~~~d~ 36 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL---S--MIYVDTGA 36 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---T--CEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---C--CceecCCh
Confidence 4568999999 99999999998854 3 34566653
No 476
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.35 E-value=0.039 Score=60.80 Aligned_cols=44 Identities=14% Similarity=0.196 Sum_probs=38.8
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
+..-..++|.|++ +||||+|.+++...++.|.+|++|++.-..+
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~ 424 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 424 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH
Confidence 4456679999999 9999999999999999999999999987654
No 477
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.33 E-value=0.034 Score=45.57 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=19.3
Q ss_pred ccCceEEEEECCC-CcHHHHHHHH
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSL 38 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~L 38 (284)
+.+.-++.++||. |||||+++.+
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHH
Confidence 4556679999999 9999999973
No 478
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.32 E-value=0.038 Score=47.57 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=24.3
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCc
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDP 56 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDP 56 (284)
..+++++||+ |||||++..|++. |. -+|+.|-
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~----g~--~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR----GH--RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT----TC--EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh----CC--eEEecch
Confidence 4569999999 9999999888763 33 5666663
No 479
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.30 E-value=0.025 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.7
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
...+.|+||. |||||+++.|++.|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999 99999999999644
No 480
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=94.22 E-value=0.063 Score=47.79 Aligned_cols=49 Identities=6% Similarity=-0.129 Sum_probs=40.4
Q ss_pred ehhhhhhcccccccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 4 YLDLLCKGYMSWLYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
-||-+|.| -+..-..++|.|.| +||||++..+.....++|.++++++++
T Consensus 9 ~LD~~l~G---Gl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~ 58 (260)
T 3bs4_A 9 ELDREIGK---IKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSIS 58 (260)
T ss_dssp HHHHHHCC---BCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred HHHHHhCC---CCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEe
Confidence 36766666 35666778889777 999999999999888899999999987
No 481
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.12 E-value=0.036 Score=47.30 Aligned_cols=28 Identities=7% Similarity=-0.013 Sum_probs=21.7
Q ss_pred ccccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 14 SWLYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 14 ~~~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
..+.+ ..++++||. |||||++..|...+
T Consensus 15 ~~~~g-~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGR-KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSC-CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCC-CEEEEECcCCCCHHHHHHHHHhhC
Confidence 33444 458899999 99999999998754
No 482
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.11 E-value=0.037 Score=52.45 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=27.0
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
..|+++++.||| +|||++++++|..+ |...+.|+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~ 214 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVS 214 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEE
Confidence 457899999999 99999999999854 44444444
No 483
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.06 E-value=0.046 Score=51.85 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=28.9
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
-.++|+||. |||||+...+...+...+.++.++.-
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 458899999 99999999999988766566777663
No 484
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.06 E-value=0.029 Score=47.26 Aligned_cols=28 Identities=14% Similarity=0.000 Sum_probs=22.2
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
...+-.++.++||. |||||+++.++..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34555678999999 99999999999875
No 485
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.06 E-value=0.035 Score=46.73 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=23.1
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVR 46 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g 46 (284)
.+.++||. |||||++..++..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 37899999 999999999999998556
No 486
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.03 E-value=0.038 Score=53.52 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=27.8
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
+..+++.||+ +||||++..+++.+ |..++.+|.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeC
Confidence 4679999999 99999999999976 677776665
No 487
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=94.00 E-value=0.33 Score=47.63 Aligned_cols=39 Identities=21% Similarity=0.098 Sum_probs=33.4
Q ss_pred eEEEEE-CCC--CcHHHHHHHHHHHHHhcCCceEEEecCcCC
Q 023298 20 VIKCVF-SPP--PNQSTYCSSLYRHCETVRRTMHIVNLDPAA 58 (284)
Q Consensus 20 ~~~~vi-G~~--sGKTT~~~~La~~l~~~g~~v~iVdLDPq~ 58 (284)
+.++|. |.. +|||+++..|+..|.+.|.+|..+=.||--
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~py~ 45 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYI 45 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCS
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccccc
Confidence 469999 876 999999999999999999999987665433
No 488
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.96 E-value=0.029 Score=49.77 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=26.4
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecC
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLD 55 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLD 55 (284)
.+++.||+ +||||++..++..+...+....++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~ 83 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELN 83 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee
Confidence 48999999 999999999999886544333344444
No 489
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.96 E-value=0.053 Score=53.96 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=29.3
Q ss_pred EEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 21 IKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 21 ~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
..+|.||| +||||+...+..++...|.+|+++=
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a 240 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCA 240 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEc
Confidence 47899999 9999999999999999999998864
No 490
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.88 E-value=0.037 Score=47.67 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=22.5
Q ss_pred cccCceEEEEECCC-CcHHHHHHHHHHHHH
Q 023298 15 WLYALVIKCVFSPP-PNQSTYCSSLYRHCE 43 (284)
Q Consensus 15 ~~~~~~~~~viG~~-sGKTT~~~~La~~l~ 43 (284)
+...-..++|+||. |||||++..|+..+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34555679999999 999999999998653
No 491
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.84 E-value=0.054 Score=50.87 Aligned_cols=40 Identities=18% Similarity=0.054 Sum_probs=33.0
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcCCC
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPAAE 59 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq~~ 59 (284)
....++|+|+. |||||+...+...+...|.+++++| |.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~D--pkge 92 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD--PNGD 92 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE--ETTH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe--CCCc
Confidence 45568999999 9999999888888888888888875 5544
No 492
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.045 Score=52.73 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=27.9
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
...|+++++.||| +|||++++++|..+ |...+.|+
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs 275 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVI 275 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEE
Confidence 3568999999999 99999999999854 44455444
No 493
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.81 E-value=0.063 Score=47.89 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=28.5
Q ss_pred eEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 20 VIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 20 ~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
..++|.||+ +||||++..+++.+ +.+++.+|+...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~ 66 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKF 66 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhh
Confidence 369999999 99999999998765 345788888653
No 494
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.79 E-value=0.036 Score=46.77 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=17.8
Q ss_pred EEEECCC-CcHHHHHHHHHHH
Q 023298 22 KCVFSPP-PNQSTYCSSLYRH 41 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~ 41 (284)
|+|+||. |||||++..|.+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 7899999 9999999988763
No 495
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.76 E-value=0.029 Score=47.99 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=21.8
Q ss_pred ccCceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 16 LYALVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 16 ~~~~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
+.+..++.|+||. |||||++..|+..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445568999999 99999999999866
No 496
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.047 Score=50.01 Aligned_cols=27 Identities=4% Similarity=-0.041 Sum_probs=24.5
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHh
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCET 44 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~ 44 (284)
.+..++|.||+ +|||+++..++..|..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56679999999 9999999999999975
No 497
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.74 E-value=0.055 Score=51.68 Aligned_cols=34 Identities=6% Similarity=0.066 Sum_probs=26.9
Q ss_pred cCceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEe
Q 023298 17 YALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVN 53 (284)
Q Consensus 17 ~~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVd 53 (284)
.-|+++++.||| +|||++++++|..+ |...+.|+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~ 248 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIV 248 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEE
Confidence 347899999999 99999999999864 44444444
No 498
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.70 E-value=0.037 Score=48.81 Aligned_cols=24 Identities=8% Similarity=-0.101 Sum_probs=21.2
Q ss_pred ceEEEEECCC-CcHHHHHHHHHHHH
Q 023298 19 LVIKCVFSPP-PNQSTYCSSLYRHC 42 (284)
Q Consensus 19 ~~~~~viG~~-sGKTT~~~~La~~l 42 (284)
...++++|+. |||||++..|+..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3459999999 99999999999966
No 499
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.63 E-value=0.056 Score=51.38 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=27.0
Q ss_pred CceEEEEECCC-CcHHHHHHHHHHHHHhcCCceEEEec
Q 023298 18 ALVIKCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNL 54 (284)
Q Consensus 18 ~~~~~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdL 54 (284)
.+..+++.||+ +||||++..++..+ .+..++.|+.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~ 201 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISS 201 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeH
Confidence 45789999999 99999999999975 2445555544
No 500
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.59 E-value=0.036 Score=50.28 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=28.4
Q ss_pred EEEECCC-CcHHHHHHHHHHHHHhcCCceEEEecCcC
Q 023298 22 KCVFSPP-PNQSTYCSSLYRHCETVRRTMHIVNLDPA 57 (284)
Q Consensus 22 ~~viG~~-sGKTT~~~~La~~l~~~g~~v~iVdLDPq 57 (284)
+++.||+ +||||++..++..+...+.++.++.++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~ 85 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS 85 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc
Confidence 7899999 99999999999998765555555555543
Done!