Query 023301
Match_columns 284
No_of_seqs 146 out of 1334
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 02:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2743 Cobalamin synthesis pr 100.0 7.1E-55 1.5E-59 368.0 24.0 267 1-284 118-391 (391)
2 COG0523 Putative GTPases (G3E 100.0 1.1E-53 2.4E-58 377.6 28.2 264 1-284 57-322 (323)
3 PRK11537 putative GTP-binding 100.0 2.3E-52 4.9E-57 371.0 28.1 256 1-283 59-317 (318)
4 TIGR02475 CobW cobalamin biosy 100.0 2.2E-50 4.7E-55 361.8 27.3 259 1-279 65-341 (341)
5 PF02492 cobW: CobW/HypB/UreG, 99.9 1.5E-28 3.3E-33 202.1 6.2 119 1-130 56-177 (178)
6 cd03112 CobW_like The function 99.9 1.4E-24 3.1E-29 175.0 10.3 101 1-107 55-158 (158)
7 PF07683 CobW_C: Cobalamin syn 99.8 5.4E-19 1.2E-23 130.1 9.6 91 189-283 1-94 (94)
8 smart00833 CobW_C Cobalamin sy 99.8 7E-18 1.5E-22 123.6 11.9 91 189-283 1-92 (92)
9 TIGR00101 ureG urease accessor 99.6 2.7E-15 5.8E-20 125.4 9.0 120 3-143 63-188 (199)
10 PRK10463 hydrogenase nickel in 99.5 7E-14 1.5E-18 121.8 7.8 119 1-143 159-281 (290)
11 TIGR00073 hypB hydrogenase acc 99.5 2.3E-13 4.9E-18 114.6 8.5 119 1-143 77-199 (207)
12 COG0378 HypB Ni2+-binding GTPa 98.4 6.9E-07 1.5E-11 72.9 6.0 98 15-134 83-183 (202)
13 PRK09435 membrane ATPase/prote 98.3 5.4E-06 1.2E-10 74.4 11.1 104 8-133 127-241 (332)
14 COG2403 Predicted GTPase [Gene 98.2 3.7E-06 8E-11 74.7 7.3 94 13-132 212-305 (449)
15 COG1159 Era GTPase [General fu 98.1 7.9E-06 1.7E-10 71.0 6.6 99 28-134 52-154 (298)
16 cd04163 Era Era subfamily. Er 97.8 7.7E-05 1.7E-09 59.1 7.1 100 29-133 50-150 (168)
17 PRK00089 era GTPase Era; Revie 97.6 0.00021 4.6E-09 63.2 8.0 98 29-134 52-153 (292)
18 COG1703 ArgK Putative periplas 97.4 0.0012 2.5E-08 57.8 9.5 63 27-109 141-203 (323)
19 PRK13768 GTPase; Provisional 97.3 0.00083 1.8E-08 58.3 7.0 92 27-121 94-188 (253)
20 PF03308 ArgK: ArgK protein; 97.3 0.00079 1.7E-08 57.8 6.7 91 21-133 115-211 (266)
21 TIGR00750 lao LAO/AO transport 97.2 0.0058 1.3E-07 54.4 11.6 71 20-112 119-189 (300)
22 PRK15494 era GTPase Era; Provi 96.8 0.0025 5.4E-08 57.7 6.0 108 30-143 100-208 (339)
23 TIGR00436 era GTP-binding prot 96.8 0.0041 8.8E-08 54.4 7.1 105 30-143 48-156 (270)
24 cd01895 EngA2 EngA2 subfamily. 96.7 0.0056 1.2E-07 48.8 6.7 100 29-133 49-156 (174)
25 cd00881 GTP_translation_factor 96.6 0.0081 1.8E-07 48.7 6.9 82 29-123 61-142 (189)
26 cd03114 ArgK-like The function 96.5 0.019 4.2E-07 45.5 8.3 66 19-106 83-148 (148)
27 cd04167 Snu114p Snu114p subfam 96.4 0.0033 7.1E-08 52.9 3.7 90 30-132 71-167 (213)
28 PRK09866 hypothetical protein; 96.3 0.014 3E-07 56.5 7.8 104 28-143 228-345 (741)
29 cd00880 Era_like Era (E. coli 96.3 0.011 2.3E-07 45.9 5.9 99 29-133 44-145 (163)
30 PRK00093 GTP-binding protein D 96.1 0.02 4.3E-07 53.6 7.4 110 29-143 220-336 (435)
31 TIGR03598 GTPase_YsxC ribosome 95.7 0.052 1.1E-06 44.1 7.4 97 31-133 65-171 (179)
32 PRK12298 obgE GTPase CgtA; Rev 95.6 0.037 8.1E-07 51.1 6.9 106 31-143 208-325 (390)
33 cd01878 HflX HflX subfamily. 95.6 0.04 8.6E-07 45.7 6.5 79 30-114 89-172 (204)
34 TIGR03594 GTPase_EngA ribosome 95.5 0.03 6.6E-07 52.2 6.1 99 31-134 221-326 (429)
35 COG1160 Predicted GTPases [Gen 95.3 0.025 5.4E-07 52.3 4.8 102 28-134 224-333 (444)
36 cd01858 NGP_1 NGP-1. Autoanti 95.3 0.044 9.6E-07 43.6 5.6 56 61-124 8-68 (157)
37 COG0218 Predicted GTPase [Gene 95.0 0.081 1.7E-06 43.8 6.5 86 31-121 71-161 (200)
38 COG2262 HflX GTPases [General 95.0 0.11 2.3E-06 47.6 7.7 105 29-143 239-348 (411)
39 cd03115 SRP The signal recogni 95.0 0.14 3E-06 41.4 7.8 73 27-109 80-153 (173)
40 cd04164 trmE TrmE (MnmE, ThdF, 94.9 0.035 7.5E-07 43.4 3.9 77 30-113 49-125 (157)
41 cd04178 Nucleostemin_like Nucl 94.8 0.059 1.3E-06 43.9 5.2 54 63-124 1-59 (172)
42 cd01888 eIF2_gamma eIF2-gamma 94.7 0.1 2.2E-06 43.5 6.5 92 30-133 83-180 (203)
43 PF02421 FeoB_N: Ferrous iron 94.7 0.0066 1.4E-07 48.6 -0.7 94 29-133 46-142 (156)
44 PTZ00327 eukaryotic translatio 94.6 0.13 2.9E-06 48.5 7.8 89 31-133 118-214 (460)
45 PRK14974 cell division protein 94.6 0.34 7.4E-06 43.8 10.0 95 28-136 221-316 (336)
46 COG1084 Predicted GTPase [Gene 94.6 0.034 7.4E-07 49.3 3.4 92 31-123 216-308 (346)
47 cd01857 HSR1_MMR1 HSR1/MMR1. 94.6 0.084 1.8E-06 41.2 5.4 65 61-132 11-77 (141)
48 cd01889 SelB_euk SelB subfamil 94.5 0.3 6.6E-06 40.0 8.9 91 29-133 67-167 (192)
49 cd01894 EngA1 EngA1 subfamily. 94.4 0.18 4E-06 39.2 7.1 79 29-113 44-123 (157)
50 cd01884 EF_Tu EF-Tu subfamily. 94.4 0.097 2.1E-06 43.5 5.6 81 29-122 64-146 (195)
51 cd01898 Obg Obg subfamily. Th 94.4 0.11 2.4E-06 41.3 5.8 74 31-115 49-134 (170)
52 TIGR03156 GTP_HflX GTP-binding 94.0 0.18 4E-06 45.9 7.0 79 29-113 236-319 (351)
53 cd04105 SR_beta Signal recogni 93.9 0.15 3.2E-06 42.6 5.9 84 30-121 48-135 (203)
54 cd01881 Obg_like The Obg-like 93.8 0.16 3.5E-06 40.5 5.8 102 29-133 43-158 (176)
55 cd01882 BMS1 Bms1. Bms1 is an 93.8 0.31 6.7E-06 41.4 7.7 95 30-140 83-187 (225)
56 TIGR02729 Obg_CgtA Obg family 93.8 0.21 4.5E-06 45.1 6.9 92 30-133 205-310 (329)
57 PRK15467 ethanolamine utilizat 93.8 0.14 3.1E-06 40.8 5.3 97 34-143 41-139 (158)
58 PRK01889 GTPase RsgA; Reviewed 93.8 0.081 1.8E-06 48.3 4.3 69 60-134 111-179 (356)
59 cd01876 YihA_EngB The YihA (En 93.6 0.51 1.1E-05 36.9 8.3 97 31-133 46-152 (170)
60 cd01879 FeoB Ferrous iron tran 93.5 0.21 4.5E-06 39.1 5.7 93 30-133 43-138 (158)
61 TIGR00231 small_GTP small GTP- 93.2 0.52 1.1E-05 36.2 7.7 94 30-133 50-145 (161)
62 cd01849 YlqF_related_GTPase Yl 93.2 0.28 6.1E-06 38.9 6.2 66 63-133 1-66 (155)
63 PF00009 GTP_EFTU: Elongation 93.0 0.27 5.9E-06 40.2 6.0 79 29-121 69-147 (188)
64 PRK10512 selenocysteinyl-tRNA- 93.0 0.46 1E-05 46.6 8.4 89 32-133 53-147 (614)
65 cd04171 SelB SelB subfamily. 93.0 0.69 1.5E-05 36.2 8.2 90 30-133 51-147 (164)
66 TIGR00064 ftsY signal recognit 92.9 1.2 2.5E-05 39.1 10.1 100 28-142 153-259 (272)
67 PRK10416 signal recognition pa 92.9 1.1 2.4E-05 40.2 10.0 98 27-137 194-297 (318)
68 cd04160 Arfrp1 Arfrp1 subfamil 92.8 0.51 1.1E-05 37.3 7.2 82 30-122 50-134 (167)
69 PRK09554 feoB ferrous iron tra 92.8 0.17 3.6E-06 50.9 5.0 97 29-133 49-149 (772)
70 cd04165 GTPBP1_like GTPBP1-lik 92.7 0.61 1.3E-05 39.6 7.8 84 29-123 83-166 (224)
71 KOG2484 GTPase [General functi 92.5 0.28 6.1E-06 44.7 5.6 64 62-133 147-215 (435)
72 PRK12299 obgE GTPase CgtA; Rev 92.5 0.36 7.8E-06 43.7 6.5 108 30-143 206-320 (335)
73 PRK00454 engB GTP-binding prot 92.3 0.8 1.7E-05 37.3 7.9 98 30-133 70-175 (196)
74 cd01891 TypA_BipA TypA (tyrosi 92.3 0.89 1.9E-05 37.3 8.1 67 30-109 65-131 (194)
75 cd00882 Ras_like_GTPase Ras-li 92.2 0.26 5.6E-06 37.4 4.6 96 29-134 44-142 (157)
76 cd01854 YjeQ_engC YjeQ/EngC. 92.1 0.31 6.8E-06 43.0 5.5 115 4-133 17-145 (287)
77 cd04101 RabL4 RabL4 (Rab-like4 92.1 0.63 1.4E-05 36.6 6.8 68 30-112 52-124 (164)
78 cd01883 EF1_alpha Eukaryotic e 92.0 0.27 5.9E-06 41.5 4.8 84 29-121 76-167 (219)
79 cd04166 CysN_ATPS CysN_ATPS su 92.0 0.61 1.3E-05 38.9 6.9 68 29-109 76-144 (208)
80 PRK00049 elongation factor Tu; 92.0 0.94 2E-05 41.9 8.7 92 29-133 74-174 (396)
81 TIGR00475 selB selenocysteine- 91.9 0.94 2E-05 44.2 8.9 89 31-133 51-147 (581)
82 PF00448 SRP54: SRP54-type pro 91.9 2.7 5.7E-05 34.9 10.5 96 27-136 81-177 (196)
83 cd01887 IF2_eIF5B IF2/eIF5B (i 91.8 0.83 1.8E-05 36.0 7.3 69 29-110 49-117 (168)
84 PRK12296 obgE GTPase CgtA; Rev 91.7 0.58 1.3E-05 44.6 7.0 107 30-142 206-331 (500)
85 TIGR00959 ffh signal recogniti 91.6 1.9 4.1E-05 40.4 10.3 95 27-135 180-275 (428)
86 KOG1424 Predicted GTP-binding 91.5 0.35 7.7E-06 45.5 5.2 60 61-124 174-234 (562)
87 cd01890 LepA LepA subfamily. 91.5 1.1 2.3E-05 35.9 7.6 68 29-109 66-133 (179)
88 PLN03127 Elongation factor Tu; 91.0 0.48 1E-05 44.6 5.8 70 30-112 124-194 (447)
89 KOG0462 Elongation factor-type 91.0 0.51 1.1E-05 44.9 5.7 98 31-143 126-227 (650)
90 KOG1532 GTPase XAB1, interacts 91.0 1.5 3.2E-05 38.4 8.0 84 17-112 103-198 (366)
91 PRK05124 cysN sulfate adenylyl 90.9 0.8 1.7E-05 43.5 7.1 92 29-133 106-206 (474)
92 TIGR01425 SRP54_euk signal rec 90.8 1.2 2.6E-05 41.6 8.0 94 28-135 181-275 (429)
93 cd04142 RRP22 RRP22 subfamily. 90.7 1.8 3.8E-05 35.9 8.4 107 30-144 49-167 (198)
94 TIGR02528 EutP ethanolamine ut 90.7 0.84 1.8E-05 35.1 6.1 64 61-133 62-126 (142)
95 PRK10867 signal recognition pa 90.7 3.1 6.8E-05 39.0 10.7 95 27-135 181-276 (433)
96 cd01886 EF-G Elongation factor 90.6 0.81 1.7E-05 40.1 6.5 81 29-123 63-143 (270)
97 PRK04213 GTP-binding protein; 90.5 0.94 2E-05 37.2 6.6 80 31-111 53-146 (201)
98 KOG0090 Signal recognition par 90.5 0.93 2E-05 38.0 6.2 62 54-120 101-170 (238)
99 cd04153 Arl5_Arl8 Arl5/Arl8 su 90.4 1.9 4E-05 34.6 8.1 66 30-109 59-130 (174)
100 PRK12289 GTPase RsgA; Reviewed 90.4 0.44 9.5E-06 43.4 4.7 80 59-143 87-167 (352)
101 PRK06731 flhF flagellar biosyn 90.3 3.6 7.8E-05 36.0 10.2 108 14-137 141-249 (270)
102 PF09439 SRPRB: Signal recogni 90.3 1 2.2E-05 37.0 6.3 86 29-121 48-138 (181)
103 cd01859 MJ1464 MJ1464. This f 90.3 0.91 2E-05 35.8 6.0 65 62-133 13-77 (156)
104 PRK03003 GTP-binding protein D 90.3 2.1 4.6E-05 40.6 9.5 102 31-143 260-374 (472)
105 TIGR03596 GTPase_YlqF ribosome 90.2 0.75 1.6E-05 40.3 6.0 72 41-122 3-75 (276)
106 PRK12736 elongation factor Tu; 90.2 1.5 3.3E-05 40.5 8.3 92 29-133 74-174 (394)
107 cd04151 Arl1 Arl1 subfamily. 90.1 1.5 3.3E-05 34.3 7.3 78 30-118 43-123 (158)
108 cd01885 EF2 EF2 (for archaea a 90.0 1 2.2E-05 38.2 6.4 81 29-125 72-162 (222)
109 PRK04000 translation initiatio 89.9 0.88 1.9E-05 42.4 6.5 90 30-133 85-182 (411)
110 cd04154 Arl2 Arl2 subfamily. 89.7 1.6 3.4E-05 34.9 7.1 93 31-133 59-156 (173)
111 PRK11889 flhF flagellar biosyn 89.6 3.5 7.5E-05 38.3 9.8 114 13-142 306-420 (436)
112 PRK05291 trmE tRNA modificatio 89.6 0.52 1.1E-05 44.4 4.8 76 30-112 263-338 (449)
113 cd01856 YlqF YlqF. Proteins o 89.6 0.73 1.6E-05 37.1 5.0 54 60-121 18-72 (171)
114 PRK12735 elongation factor Tu; 89.4 1.5 3.2E-05 40.6 7.5 88 29-133 74-174 (396)
115 TIGR00437 feoB ferrous iron tr 89.3 0.5 1.1E-05 46.2 4.5 100 31-143 42-147 (591)
116 TIGR00485 EF-Tu translation el 89.1 1.2 2.5E-05 41.3 6.6 90 30-133 75-174 (394)
117 CHL00071 tufA elongation facto 89.0 1.5 3.3E-05 40.7 7.3 92 29-133 74-174 (409)
118 PRK09518 bifunctional cytidyla 89.0 0.72 1.6E-05 46.1 5.5 106 30-143 498-613 (712)
119 PRK12726 flagellar biosynthesi 89.0 4.6 0.0001 37.2 10.1 107 13-136 271-379 (407)
120 PRK12297 obgE GTPase CgtA; Rev 88.6 0.99 2.1E-05 42.2 5.8 107 30-143 206-319 (424)
121 KOG0780 Signal recognition par 88.6 2.1 4.5E-05 39.2 7.4 71 27-107 181-252 (483)
122 TIGR00157 ribosome small subun 88.5 1.1 2.4E-05 38.6 5.6 106 30-143 4-115 (245)
123 PRK09563 rbgA GTPase YlqF; Rev 88.3 1.1 2.3E-05 39.6 5.6 71 41-121 6-77 (287)
124 PF03029 ATP_bind_1: Conserved 88.2 0.68 1.5E-05 39.8 4.1 87 29-119 90-179 (238)
125 cd00878 Arf_Arl Arf (ADP-ribos 88.0 2.6 5.7E-05 32.8 7.2 82 30-122 43-127 (158)
126 COG3276 SelB Selenocysteine-sp 87.8 1.5 3.1E-05 40.7 6.1 91 30-134 50-144 (447)
127 cd01860 Rab5_related Rab5-rela 87.6 4.3 9.3E-05 31.7 8.3 64 61-133 73-144 (163)
128 cd03110 Fer4_NifH_child This p 87.4 5.8 0.00012 31.9 9.0 81 27-123 90-170 (179)
129 smart00178 SAR Sar1p-like memb 87.2 2.5 5.5E-05 34.3 6.9 69 30-108 61-131 (184)
130 COG1161 Predicted GTPases [Gen 87.2 1.5 3.3E-05 39.4 5.9 65 60-131 33-97 (322)
131 cd04145 M_R_Ras_like M-Ras/R-R 87.1 6.7 0.00015 30.5 9.2 99 32-143 52-156 (164)
132 cd04161 Arl2l1_Arl13_like Arl2 87.0 2.6 5.7E-05 33.5 6.8 77 30-116 43-121 (167)
133 cd00550 ArsA_ATPase Oxyanion-t 87.0 14 0.0003 31.9 11.6 80 18-108 115-202 (254)
134 cd00154 Rab Rab family. Rab G 86.7 5.3 0.00011 30.5 8.2 91 30-133 49-143 (159)
135 TIGR02034 CysN sulfate adenyly 86.3 2.3 5E-05 39.5 6.8 92 29-133 79-178 (406)
136 PRK00098 GTPase RsgA; Reviewed 85.9 1.5 3.3E-05 38.9 5.2 79 60-143 79-159 (298)
137 cd04158 ARD1 ARD1 subfamily. 85.9 3.9 8.5E-05 32.5 7.2 80 30-120 43-125 (169)
138 TIGR00483 EF-1_alpha translati 85.8 3.3 7.1E-05 38.7 7.6 94 29-133 84-188 (426)
139 cd01852 AIG1 AIG1 (avrRpt2-ind 85.4 1.4 3.1E-05 36.3 4.5 74 29-112 48-133 (196)
140 cd01864 Rab19 Rab19 subfamily. 85.4 7.2 0.00016 30.6 8.5 91 30-133 52-147 (165)
141 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 85.3 4.3 9.4E-05 31.9 7.2 98 32-143 53-156 (166)
142 TIGR00484 EF-G translation elo 85.3 3 6.5E-05 41.6 7.5 81 29-123 74-154 (689)
143 cd04150 Arf1_5_like Arf1-Arf5- 85.3 4.5 9.8E-05 31.9 7.2 71 30-110 44-116 (159)
144 cd04110 Rab35 Rab35 subfamily. 85.2 9.5 0.00021 31.3 9.4 99 32-143 57-159 (199)
145 PTZ00141 elongation factor 1- 85.1 2.8 6.2E-05 39.5 6.8 96 29-133 84-194 (446)
146 cd01863 Rab18 Rab18 subfamily. 85.1 8.5 0.00018 29.9 8.8 91 30-133 49-143 (161)
147 cd04149 Arf6 Arf6 subfamily. 85.0 4.1 8.9E-05 32.5 6.9 81 30-120 53-135 (168)
148 cd04139 RalA_RalB RalA/RalB su 84.8 5.9 0.00013 30.8 7.7 101 30-143 48-154 (164)
149 cd04168 TetM_like Tet(M)-like 84.7 3.9 8.5E-05 35.0 7.0 83 29-125 63-145 (237)
150 PRK11058 GTPase HflX; Provisio 84.6 1.9 4E-05 40.4 5.3 74 31-110 246-324 (426)
151 cd04170 EF-G_bact Elongation f 84.6 3 6.6E-05 36.2 6.4 81 29-123 63-143 (268)
152 PRK00007 elongation factor G; 83.9 2.4 5.2E-05 42.3 6.1 81 29-123 74-154 (693)
153 COG1160 Predicted GTPases [Gen 83.9 1.4 3E-05 41.1 4.0 76 29-110 50-127 (444)
154 PRK00771 signal recognition pa 83.8 5.1 0.00011 37.6 7.8 93 29-135 175-268 (437)
155 PF10662 PduV-EutP: Ethanolami 83.7 4.1 9E-05 32.0 6.1 66 59-133 61-127 (143)
156 KOG1954 Endocytosis/signaling 83.7 2.1 4.6E-05 39.0 5.0 81 31-120 148-236 (532)
157 PTZ00099 rab6; Provisional 83.4 3.9 8.4E-05 33.2 6.2 102 28-143 27-134 (176)
158 COG5257 GCD11 Translation init 83.4 3 6.5E-05 37.4 5.6 79 60-143 108-194 (415)
159 cd01850 CDC_Septin CDC/Septin. 83.3 5.5 0.00012 35.0 7.4 64 61-131 114-181 (276)
160 cd04157 Arl6 Arl6 subfamily. 83.2 5.6 0.00012 30.9 7.0 76 32-118 47-127 (162)
161 cd04119 RJL RJL (RabJ-Like) su 83.2 11 0.00023 29.3 8.6 100 31-143 50-159 (168)
162 PRK12739 elongation factor G; 83.2 1.2 2.6E-05 44.4 3.6 81 29-123 72-152 (691)
163 cd01866 Rab2 Rab2 subfamily. 83.1 9.5 0.00021 30.1 8.3 96 31-143 54-158 (168)
164 cd01893 Miro1 Miro1 subfamily. 83.1 12 0.00025 29.6 8.8 72 30-112 47-120 (166)
165 PRK05506 bifunctional sulfate 83.1 3 6.6E-05 41.1 6.4 92 29-133 103-202 (632)
166 PLN03118 Rab family protein; P 82.7 8 0.00017 32.1 8.0 97 31-143 63-169 (211)
167 cd04156 ARLTS1 ARLTS1 subfamil 82.7 7.7 0.00017 30.2 7.6 70 30-109 44-115 (160)
168 PF00025 Arf: ADP-ribosylation 82.7 3.2 7E-05 33.5 5.4 58 61-120 81-140 (175)
169 COG1419 FlhF Flagellar GTP-bin 82.5 12 0.00027 34.6 9.5 110 13-143 270-382 (407)
170 COG3640 CooC CO dehydrogenase 82.5 9 0.00019 32.8 8.0 87 2-108 110-198 (255)
171 PRK14722 flhF flagellar biosyn 82.4 12 0.00027 34.3 9.6 97 28-137 214-319 (374)
172 PRK12724 flagellar biosynthesi 82.4 14 0.0003 34.6 9.9 97 27-137 297-397 (432)
173 TIGR03680 eif2g_arch translati 82.3 3.9 8.5E-05 38.0 6.5 90 30-133 80-177 (406)
174 smart00177 ARF ARF-like small 82.3 7.8 0.00017 31.1 7.6 70 30-109 57-128 (175)
175 cd01897 NOG NOG1 is a nucleola 82.2 2.2 4.8E-05 33.6 4.2 95 30-133 47-149 (168)
176 smart00173 RAS Ras subfamily o 81.7 18 0.0004 28.1 9.5 100 31-143 49-154 (164)
177 TIGR01007 eps_fam capsular exo 81.6 7.8 0.00017 32.0 7.5 14 28-41 126-139 (204)
178 cd04104 p47_IIGP_like p47 (47- 81.6 4.9 0.00011 33.1 6.2 70 30-109 52-121 (197)
179 cd01855 YqeH YqeH. YqeH is an 81.0 2 4.4E-05 35.1 3.7 43 61-111 34-77 (190)
180 cd04124 RabL2 RabL2 subfamily. 81.0 14 0.0003 29.0 8.5 98 32-143 51-150 (161)
181 PTZ00416 elongation factor 2; 80.9 2.5 5.4E-05 43.2 5.0 63 30-108 92-157 (836)
182 cd04169 RF3 RF3 subfamily. Pe 80.8 9.4 0.0002 33.3 8.0 80 29-122 70-149 (267)
183 cd04106 Rab23_lke Rab23-like s 80.8 8.8 0.00019 29.8 7.3 87 30-133 51-144 (162)
184 PF00919 UPF0004: Uncharacteri 80.7 1.1 2.3E-05 32.9 1.7 72 66-143 11-87 (98)
185 smart00175 RAB Rab subfamily o 80.7 9.6 0.00021 29.6 7.5 91 31-134 50-144 (164)
186 cd04115 Rab33B_Rab33A Rab33B/R 80.6 11 0.00023 29.9 7.8 65 61-134 75-148 (170)
187 TIGR00503 prfC peptide chain r 80.6 6.6 0.00014 37.9 7.5 67 29-109 79-146 (527)
188 PLN00116 translation elongatio 80.6 2.4 5.1E-05 43.4 4.7 76 33-124 101-186 (843)
189 COG1217 TypA Predicted membran 80.6 3.8 8.2E-05 38.5 5.5 82 30-124 68-152 (603)
190 PLN03126 Elongation factor Tu; 80.6 2.7 5.7E-05 40.0 4.7 92 29-133 143-243 (478)
191 cd01861 Rab6 Rab6 subfamily. 80.4 6.8 0.00015 30.4 6.5 89 32-133 51-143 (161)
192 cd04162 Arl9_Arfrp2_like Arl9/ 80.4 12 0.00025 29.7 7.9 37 31-75 45-81 (164)
193 PTZ00133 ADP-ribosylation fact 80.2 9.7 0.00021 30.8 7.5 38 30-75 61-98 (182)
194 cd04137 RheB Rheb (Ras Homolog 80.2 10 0.00023 30.2 7.7 69 30-109 49-120 (180)
195 TIGR03594 GTPase_EngA ribosome 79.8 2.5 5.4E-05 39.4 4.3 76 30-111 47-123 (429)
196 cd00879 Sar1 Sar1 subfamily. 79.7 8.1 0.00017 31.2 6.9 79 31-120 64-145 (190)
197 cd04175 Rap1 Rap1 subgroup. T 79.7 18 0.00039 28.2 8.8 98 33-143 52-155 (164)
198 COG0370 FeoB Fe2+ transport sy 79.6 1.6 3.5E-05 42.6 2.9 71 29-110 49-123 (653)
199 cd04159 Arl10_like Arl10-like 79.5 11 0.00024 28.8 7.4 76 31-116 45-122 (159)
200 COG4917 EutP Ethanolamine util 79.4 3.5 7.7E-05 31.7 4.1 35 98-133 93-127 (148)
201 PRK12317 elongation factor 1-a 79.4 6 0.00013 36.9 6.7 70 29-109 83-153 (425)
202 PRK10218 GTP-binding protein; 79.2 5 0.00011 39.4 6.2 78 30-120 68-148 (607)
203 cd04107 Rab32_Rab38 Rab38/Rab3 79.2 24 0.00053 28.8 9.7 100 32-143 52-160 (201)
204 PRK14723 flhF flagellar biosyn 79.1 15 0.00032 37.1 9.4 97 28-137 262-362 (767)
205 cd00876 Ras Ras family. The R 78.9 26 0.00057 26.8 9.4 91 30-133 47-142 (160)
206 cd04114 Rab30 Rab30 subfamily. 78.4 15 0.00032 28.8 7.9 99 32-143 58-161 (169)
207 cd04136 Rap_like Rap-like subf 78.4 17 0.00037 28.1 8.3 88 33-133 52-144 (163)
208 PF01656 CbiA: CobQ/CobB/MinD/ 78.3 33 0.00072 27.5 11.3 76 28-121 93-174 (195)
209 KOG0461 Selenocysteine-specifi 78.0 8.9 0.00019 34.8 6.8 94 27-134 67-171 (522)
210 cd04144 Ras2 Ras2 subfamily. 77.9 15 0.00032 29.9 7.9 95 32-143 49-155 (190)
211 cd04148 RGK RGK subfamily. Th 77.8 13 0.00028 31.3 7.7 74 61-143 72-155 (221)
212 cd01867 Rab8_Rab10_Rab13_like 77.7 19 0.0004 28.3 8.3 88 32-133 54-146 (167)
213 cd01892 Miro2 Miro2 subfamily. 77.4 9.6 0.00021 30.3 6.6 43 61-110 77-123 (169)
214 cd04122 Rab14 Rab14 subfamily. 77.4 13 0.00029 29.1 7.4 85 32-133 53-145 (166)
215 COG0552 FtsY Signal recognitio 77.3 11 0.00025 33.8 7.4 95 27-135 219-320 (340)
216 COG4026 Uncharacterized protei 77.1 17 0.00036 30.7 7.7 87 32-135 10-97 (290)
217 PLN00043 elongation factor 1-a 76.8 6.7 0.00014 37.0 6.2 95 30-133 85-194 (447)
218 cd04155 Arl3 Arl3 subfamily. 76.6 7.8 0.00017 30.6 5.8 75 30-118 58-138 (173)
219 cd04113 Rab4 Rab4 subfamily. 76.3 12 0.00027 29.0 6.9 88 32-133 51-143 (161)
220 COG1162 Predicted GTPases [Gen 76.1 5.7 0.00012 35.2 5.1 41 92-133 107-148 (301)
221 PRK12740 elongation factor G; 76.1 5.7 0.00012 39.5 5.8 81 29-123 59-139 (668)
222 cd04152 Arl4_Arl7 Arl4/Arl7 su 75.5 7 0.00015 31.6 5.4 68 31-109 53-123 (183)
223 COG0541 Ffh Signal recognition 75.2 11 0.00025 35.1 7.0 72 27-108 180-252 (451)
224 PF14972 Mito_morph_reg: Mitoc 75.1 3 6.6E-05 33.1 2.8 30 12-44 17-46 (165)
225 cd04176 Rap2 Rap2 subgroup. T 75.0 13 0.00029 28.9 6.8 67 33-110 52-121 (163)
226 PLN00223 ADP-ribosylation fact 75.0 16 0.00035 29.5 7.3 80 31-120 62-143 (181)
227 COG0486 ThdF Predicted GTPase 74.8 4.5 9.7E-05 37.9 4.3 79 29-116 264-345 (454)
228 PRK05703 flhF flagellar biosyn 74.3 29 0.00063 32.5 9.7 93 28-136 298-394 (424)
229 PRK12727 flagellar biosynthesi 74.2 38 0.00082 32.8 10.4 94 28-136 427-521 (559)
230 PTZ00369 Ras-like protein; Pro 74.1 24 0.00052 28.5 8.3 97 34-143 57-159 (189)
231 cd01862 Rab7 Rab7 subfamily. 74.0 32 0.00068 26.8 8.8 79 61-143 72-159 (172)
232 smart00053 DYNc Dynamin, GTPas 74.0 11 0.00023 32.5 6.2 73 29-110 124-207 (240)
233 PRK00093 GTP-binding protein D 73.6 13 0.00027 34.8 7.2 75 29-109 48-123 (435)
234 cd04108 Rab36_Rab34 Rab34/Rab3 73.6 26 0.00056 27.8 8.2 70 32-112 51-123 (170)
235 cd00157 Rho Rho (Ras homology) 73.6 18 0.00039 28.3 7.2 67 31-111 49-120 (171)
236 cd04130 Wrch_1 Wrch-1 subfamil 73.4 26 0.00056 27.7 8.1 65 32-110 50-119 (173)
237 cd04109 Rab28 Rab28 subfamily. 72.9 34 0.00074 28.4 9.1 96 31-143 51-158 (215)
238 PF04670 Gtr1_RagA: Gtr1/RagA 72.7 6.8 0.00015 33.5 4.7 81 31-116 49-132 (232)
239 cd04141 Rit_Rin_Ric Rit/Rin/Ri 72.1 16 0.00035 29.1 6.7 99 31-143 51-156 (172)
240 cd04140 ARHI_like ARHI subfami 72.0 29 0.00063 27.1 8.1 66 32-109 51-122 (165)
241 TIGR01394 TypA_BipA GTP-bindin 72.0 9.6 0.00021 37.3 6.1 80 30-122 64-146 (594)
242 cd04123 Rab21 Rab21 subfamily. 71.5 20 0.00043 27.5 7.0 89 31-133 50-143 (162)
243 PRK07560 elongation factor EF- 71.3 7.4 0.00016 39.2 5.3 67 29-108 86-152 (731)
244 KOG1423 Ras-like GTPase ERA [C 71.1 5.5 0.00012 35.5 3.8 80 27-110 117-200 (379)
245 cd04125 RabA_like RabA-like su 70.8 37 0.0008 27.3 8.6 97 33-143 52-154 (188)
246 cd04138 H_N_K_Ras_like H-Ras/N 70.4 46 0.00099 25.4 9.1 97 34-143 53-154 (162)
247 cd04118 Rab24 Rab24 subfamily. 70.3 34 0.00074 27.5 8.3 46 61-110 73-120 (193)
248 cd04121 Rab40 Rab40 subfamily. 70.0 45 0.00098 27.2 9.0 97 34-143 59-159 (189)
249 cd00877 Ran Ran (Ras-related n 69.9 18 0.00039 28.5 6.5 63 32-109 51-118 (166)
250 cd04111 Rab39 Rab39 subfamily. 69.6 35 0.00076 28.3 8.3 95 32-143 54-158 (211)
251 cd04132 Rho4_like Rho4-like su 69.6 31 0.00067 27.6 7.9 98 31-143 50-159 (187)
252 cd04127 Rab27A Rab27a subfamil 69.5 25 0.00053 27.9 7.2 86 31-133 64-158 (180)
253 PRK12723 flagellar biosynthesi 69.2 42 0.00091 31.1 9.3 93 28-136 253-349 (388)
254 cd01865 Rab3 Rab3 subfamily. 69.0 53 0.0012 25.6 9.4 99 31-143 51-155 (165)
255 PRK12288 GTPase RsgA; Reviewed 68.7 7.7 0.00017 35.3 4.4 80 60-143 119-200 (347)
256 cd04143 Rhes_like Rhes_like su 68.6 42 0.00091 28.8 8.8 96 32-143 50-163 (247)
257 KOG0071 GTP-binding ADP-ribosy 68.5 5.5 0.00012 31.3 2.9 57 62-120 85-143 (180)
258 PRK05433 GTP-binding protein L 68.3 17 0.00036 35.8 6.9 100 30-143 74-176 (600)
259 TIGR01393 lepA GTP-binding pro 67.8 16 0.00034 35.9 6.6 100 30-143 70-172 (595)
260 TIGR00450 mnmE_trmE_thdF tRNA 67.7 8.4 0.00018 36.3 4.6 70 32-110 253-325 (442)
261 cd01868 Rab11_like Rab11-like. 67.6 37 0.00079 26.4 7.8 99 31-143 53-157 (165)
262 PRK03003 GTP-binding protein D 67.4 6.3 0.00014 37.4 3.7 73 31-109 87-160 (472)
263 KOG0460 Mitochondrial translat 67.3 13 0.00028 33.7 5.3 86 35-133 122-216 (449)
264 CHL00189 infB translation init 66.9 20 0.00043 36.1 7.2 97 30-143 295-402 (742)
265 PRK10076 pyruvate formate lyas 66.8 76 0.0017 26.6 9.8 43 3-48 38-85 (213)
266 cd02035 ArsA ArsA ATPase funct 65.7 78 0.0017 26.4 10.5 67 28-108 112-183 (217)
267 cd04112 Rab26 Rab26 subfamily. 65.2 29 0.00062 28.1 6.9 77 62-143 74-155 (191)
268 KOG0072 GTP-binding ADP-ribosy 64.8 9.8 0.00021 30.0 3.6 48 61-110 85-134 (182)
269 COG2229 Predicted GTPase [Gene 64.6 23 0.0005 29.0 5.9 66 62-133 92-159 (187)
270 PF06858 NOG1: Nucleolar GTP-b 64.5 5.1 0.00011 26.2 1.7 43 63-106 15-58 (58)
271 PRK00741 prfC peptide chain re 64.4 31 0.00067 33.3 7.8 69 29-110 78-146 (526)
272 cd04147 Ras_dva Ras-dva subfam 64.0 51 0.0011 26.8 8.2 68 31-109 48-118 (198)
273 smart00174 RHO Rho (Ras homolo 64.0 25 0.00055 27.6 6.2 70 30-109 46-116 (174)
274 COG0050 TufB GTPases - transla 63.6 12 0.00027 33.2 4.4 90 31-133 76-174 (394)
275 PRK14721 flhF flagellar biosyn 63.4 62 0.0014 30.3 9.3 95 28-136 268-363 (420)
276 KOG0458 Elongation factor 1 al 63.0 24 0.00051 34.2 6.5 107 29-144 254-367 (603)
277 PLN03108 Rab family protein; P 62.7 51 0.0011 27.3 8.0 67 61-133 78-149 (210)
278 PRK09518 bifunctional cytidyla 62.5 8.5 0.00018 38.6 3.8 75 30-110 323-398 (712)
279 PRK13796 GTPase YqeH; Provisio 62.5 12 0.00026 34.2 4.5 51 63-121 71-123 (365)
280 KOG1534 Putative transcription 61.9 6.6 0.00014 33.1 2.4 95 29-130 97-196 (273)
281 TIGR03597 GTPase_YqeH ribosome 61.5 11 0.00024 34.4 4.1 52 61-120 63-116 (360)
282 PF02606 LpxK: Tetraacyldisacc 61.5 11 0.00024 33.9 4.0 62 64-133 147-208 (326)
283 cd04128 Spg1 Spg1p. Spg1p (se 61.5 84 0.0018 25.3 9.5 74 61-143 72-158 (182)
284 cd04116 Rab9 Rab9 subfamily. 61.2 76 0.0016 24.7 8.6 34 99-133 118-152 (170)
285 KOG0070 GTP-binding ADP-ribosy 61.2 17 0.00036 29.8 4.5 43 61-109 84-132 (181)
286 cd04146 RERG_RasL11_like RERG/ 60.5 31 0.00067 26.9 6.1 87 32-133 49-144 (165)
287 cd04120 Rab12 Rab12 subfamily. 59.6 1E+02 0.0022 25.5 9.6 98 33-143 52-155 (202)
288 COG0481 LepA Membrane GTPase L 59.1 29 0.00064 32.9 6.2 94 32-143 78-178 (603)
289 KOG0073 GTP-binding ADP-ribosy 59.1 16 0.00034 29.5 3.9 47 61-109 83-131 (185)
290 TIGR00487 IF-2 translation ini 58.6 54 0.0012 32.1 8.4 77 31-122 136-213 (587)
291 KOG2423 Nucleolar GTPase [Gene 58.2 17 0.00037 33.7 4.4 75 61-139 213-291 (572)
292 KOG0781 Signal recognition par 58.1 33 0.00073 32.6 6.4 100 27-135 464-567 (587)
293 PLN03110 Rab GTPase; Provision 58.1 63 0.0014 26.8 7.9 77 61-143 84-166 (216)
294 PRK13351 elongation factor G; 57.5 25 0.00054 35.1 6.0 81 29-123 72-152 (687)
295 cd01874 Cdc42 Cdc42 subfamily. 57.1 91 0.002 24.8 8.4 70 31-110 50-120 (175)
296 PRK14845 translation initiatio 55.8 50 0.0011 34.7 7.9 67 30-109 526-592 (1049)
297 KOG2485 Conserved ATP/GTP bind 54.9 12 0.00025 33.5 2.8 91 29-130 14-108 (335)
298 KOG0077 Vesicle coat complex C 54.6 22 0.00048 28.8 4.1 58 60-119 86-145 (193)
299 PRK05306 infB translation init 54.6 48 0.001 33.8 7.4 87 30-133 337-433 (787)
300 smart00176 RAN Ran (Ras-relate 54.3 99 0.0021 25.5 8.3 100 31-143 45-146 (200)
301 cd04126 Rab20 Rab20 subfamily. 54.1 1.3E+02 0.0029 25.2 9.6 67 31-109 45-114 (220)
302 KOG0081 GTPase Rab27, small G 53.1 59 0.0013 26.2 6.2 63 64-135 93-164 (219)
303 TIGR00490 aEF-2 translation el 53.0 59 0.0013 32.7 7.9 66 28-109 84-152 (720)
304 PRK03659 glutathione-regulated 51.9 1.8E+02 0.0039 28.6 10.9 110 4-145 401-510 (601)
305 COG3031 PulC Type II secretory 50.9 51 0.0011 28.3 5.8 31 91-121 222-253 (275)
306 PLN03071 GTP-binding nuclear p 50.8 69 0.0015 26.7 6.9 68 31-109 63-131 (219)
307 TIGR00334 5S_RNA_mat_M5 ribonu 50.5 59 0.0013 26.5 6.0 101 29-146 20-128 (174)
308 PRK10037 cell division protein 50.3 1.2E+02 0.0025 25.8 8.4 37 28-74 116-152 (250)
309 cd01169 HMPP_kinase 4-amino-5- 49.1 1E+02 0.0022 25.8 7.9 83 15-107 56-139 (242)
310 PF01926 MMR_HSR1: 50S ribosom 48.2 48 0.001 24.2 5.0 42 31-73 48-91 (116)
311 KOG0465 Mitochondrial elongati 48.2 54 0.0012 32.1 6.3 89 29-134 103-195 (721)
312 KOG1489 Predicted GTP-binding 48.0 52 0.0011 29.7 5.7 64 57-123 270-339 (366)
313 PRK06995 flhF flagellar biosyn 48.0 2.2E+02 0.0047 27.3 10.3 95 28-136 333-428 (484)
314 KOG0076 GTP-binding ADP-ribosy 46.8 21 0.00045 29.2 2.8 58 61-121 92-152 (197)
315 TIGR00176 mobB molybdopterin-g 46.5 12 0.00026 29.7 1.6 40 2-42 62-102 (155)
316 COG0536 Obg Predicted GTPase [ 45.9 42 0.00092 30.4 4.9 63 61-125 237-306 (369)
317 CHL00175 minD septum-site dete 45.3 1.6E+02 0.0034 25.5 8.6 38 28-75 125-162 (281)
318 cd04135 Tc10 TC10 subfamily. 44.7 67 0.0014 25.1 5.7 68 33-110 51-119 (174)
319 cd01853 Toc34_like Toc34-like 43.6 60 0.0013 28.0 5.5 15 29-43 78-92 (249)
320 PRK01077 cobyrinic acid a,c-di 43.0 2.9E+02 0.0063 26.0 11.4 45 28-73 80-125 (451)
321 PRK14040 oxaloacetate decarbox 42.8 48 0.001 32.5 5.3 45 4-50 141-190 (593)
322 COG1515 Nfi Deoxyinosine 3'end 42.7 29 0.00063 29.1 3.2 19 27-45 93-111 (212)
323 PF04548 AIG1: AIG1 family; I 42.7 33 0.00071 28.6 3.7 82 29-112 48-133 (212)
324 TIGR03018 pepcterm_TyrKin exop 42.4 1.3E+02 0.0029 24.7 7.4 27 95-121 170-197 (207)
325 COG2895 CysN GTPases - Sulfate 42.4 47 0.001 30.4 4.7 81 29-122 85-168 (431)
326 KOG1547 Septin CDC10 and relat 42.3 2.3E+02 0.005 24.7 9.0 42 90-131 178-222 (336)
327 PF00350 Dynamin_N: Dynamin fa 42.3 12 0.00026 29.4 1.0 70 28-105 99-168 (168)
328 PRK14338 (dimethylallyl)adenos 41.8 19 0.00041 34.1 2.3 77 61-142 27-109 (459)
329 cd04117 Rab15 Rab15 subfamily. 41.7 1.6E+02 0.0035 22.7 9.1 77 61-143 72-154 (161)
330 cd04177 RSR1 RSR1 subgroup. R 41.2 1.7E+02 0.0036 22.7 8.8 90 33-134 52-146 (168)
331 KOG1533 Predicted GTPase [Gene 40.9 37 0.0008 29.3 3.6 93 4-109 72-177 (290)
332 PF08438 MMR_HSR1_C: GTPase of 40.8 32 0.0007 25.7 2.9 30 101-134 1-31 (109)
333 COG0480 FusA Translation elong 40.6 98 0.0021 31.1 7.1 65 30-111 76-144 (697)
334 PHA02519 plasmid partition pro 40.0 1.7E+02 0.0037 27.0 8.2 87 28-126 233-325 (387)
335 TIGR00991 3a0901s02IAP34 GTP-b 39.3 50 0.0011 29.6 4.4 79 29-110 85-168 (313)
336 PRK14328 (dimethylallyl)adenos 38.5 18 0.00038 34.1 1.5 66 67-137 14-85 (439)
337 PRK14337 (dimethylallyl)adenos 38.4 14 0.0003 34.8 0.8 66 61-132 10-80 (446)
338 TIGR03029 EpsG chain length de 38.3 1.4E+02 0.0031 25.6 7.2 24 99-122 239-262 (274)
339 TIGR00313 cobQ cobyric acid sy 38.1 3.6E+02 0.0079 25.7 10.7 45 28-74 121-166 (475)
340 KOG0094 GTPase Rab6/YPT6/Ryh1, 37.9 61 0.0013 27.1 4.3 40 102-143 135-177 (221)
341 PRK05692 hydroxymethylglutaryl 37.8 68 0.0015 28.3 5.0 23 28-50 167-190 (287)
342 PRK14333 (dimethylallyl)adenos 37.7 12 0.00025 35.3 0.2 78 61-143 13-96 (448)
343 COG5258 GTPBP1 GTPase [General 37.6 37 0.00081 31.4 3.3 33 91-123 251-283 (527)
344 cd06559 Endonuclease_V Endonuc 37.0 45 0.00098 28.0 3.6 27 19-45 83-109 (208)
345 PRK10669 putative cation:proto 36.9 3.6E+02 0.0077 26.1 10.3 98 4-133 418-515 (558)
346 TIGR01968 minD_bact septum sit 36.5 2.5E+02 0.0054 23.6 8.4 37 28-74 110-146 (261)
347 TIGR03602 streptolysinS bacter 35.9 21 0.00045 22.3 1.0 8 3-10 23-30 (56)
348 KOG1490 GTP-binding protein CR 35.7 29 0.00064 33.1 2.4 100 32-133 217-322 (620)
349 TIGR01969 minD_arch cell divis 33.9 99 0.0022 25.9 5.4 37 28-74 107-143 (251)
350 PRK04004 translation initiatio 33.6 85 0.0019 30.8 5.4 64 32-108 73-136 (586)
351 PF08123 DOT1: Histone methyla 33.5 79 0.0017 26.4 4.5 39 94-133 120-158 (205)
352 TIGR03453 partition_RepA plasm 33.1 3E+02 0.0065 25.2 8.7 37 28-74 233-269 (387)
353 PRK14329 (dimethylallyl)adenos 32.6 25 0.00055 33.3 1.6 78 61-143 30-113 (467)
354 KOG0092 GTPase Rab5/YPT51 and 32.6 1.4E+02 0.0031 24.8 5.6 78 61-144 77-160 (200)
355 PRK14340 (dimethylallyl)adenos 32.3 22 0.00048 33.5 1.1 78 61-143 13-96 (445)
356 cd01873 RhoBTB RhoBTB subfamil 32.2 2.4E+02 0.0051 23.0 7.2 47 61-109 87-134 (195)
357 PRK12331 oxaloacetate decarbox 32.1 93 0.002 29.4 5.2 45 4-50 140-189 (448)
358 PRK14041 oxaloacetate decarbox 32.0 87 0.0019 29.8 5.0 44 4-50 139-188 (467)
359 KOG0466 Translation initiation 31.7 48 0.0011 29.7 3.0 44 91-134 174-223 (466)
360 PLN00023 GTP-binding protein; 30.9 2.8E+02 0.006 25.2 7.8 15 61-75 106-120 (334)
361 cd01871 Rac1_like Rac1-like su 30.4 2.7E+02 0.0059 21.9 8.0 69 31-109 50-119 (174)
362 PRK14331 (dimethylallyl)adenos 30.2 34 0.00073 32.1 2.0 40 93-132 34-78 (437)
363 PRK11617 endonuclease V; Provi 29.9 57 0.0012 27.7 3.1 27 19-45 87-113 (224)
364 TIGR01005 eps_transp_fam exopo 29.7 2E+02 0.0044 29.0 7.5 23 103-125 686-708 (754)
365 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 28.7 2.9E+02 0.0063 23.4 7.3 68 31-108 62-130 (232)
366 PRK14325 (dimethylallyl)adenos 28.6 31 0.00068 32.4 1.5 74 65-143 14-93 (444)
367 cd02117 NifH_like This family 28.5 2.5E+02 0.0055 23.0 6.9 41 28-75 115-155 (212)
368 PRK13265 glycine/sarcosine/bet 28.5 81 0.0018 24.6 3.4 83 5-101 40-137 (154)
369 PRK13705 plasmid-partitioning 28.4 4.2E+02 0.0091 24.4 8.8 37 28-74 233-269 (388)
370 PRK10537 voltage-gated potassi 28.2 4.9E+02 0.011 24.1 9.3 49 91-142 297-345 (393)
371 cd01896 DRG The developmentall 28.2 1E+02 0.0022 26.1 4.4 16 99-114 180-195 (233)
372 PRK00784 cobyric acid synthase 28.0 2.5E+02 0.0054 26.8 7.5 45 28-73 124-168 (488)
373 PF06283 ThuA: Trehalose utili 28.0 67 0.0015 26.7 3.3 30 92-121 48-79 (217)
374 PRK09841 cryptic autophosphory 28.0 2.1E+02 0.0046 28.9 7.3 23 99-121 667-689 (726)
375 TIGR00491 aIF-2 translation in 27.8 1.5E+02 0.0032 29.2 5.9 66 31-109 70-135 (590)
376 TIGR00682 lpxK tetraacyldisacc 27.7 38 0.00083 30.3 1.8 44 63-107 139-182 (311)
377 TIGR01574 miaB-methiolase tRNA 27.5 31 0.00066 32.4 1.2 73 66-143 11-90 (438)
378 PRK11519 tyrosine kinase; Prov 27.2 2E+02 0.0042 29.1 6.9 19 103-121 666-684 (719)
379 PF04723 GRDA: Glycine reducta 26.9 77 0.0017 24.7 3.0 30 4-35 38-71 (150)
380 KOG0448 Mitofusin 1 GTPase, in 26.8 1.4E+02 0.0029 29.9 5.3 85 31-125 207-293 (749)
381 PRK14326 (dimethylallyl)adenos 26.7 35 0.00075 32.8 1.4 77 62-143 21-103 (502)
382 COG1804 CaiB Predicted acyl-Co 26.6 2.8E+02 0.0062 25.8 7.3 101 21-137 27-131 (396)
383 PRK14339 (dimethylallyl)adenos 26.5 33 0.00072 32.0 1.2 41 92-132 23-66 (420)
384 PRK14336 (dimethylallyl)adenos 26.3 38 0.00083 31.6 1.6 74 65-143 12-91 (418)
385 PF00056 Ldh_1_N: lactate/mala 26.2 1.4E+02 0.003 23.1 4.5 42 92-133 65-118 (141)
386 PF00071 Ras: Ras family; Int 26.0 3E+02 0.0064 20.9 7.0 89 32-133 50-142 (162)
387 PRK14042 pyruvate carboxylase 25.8 1.2E+02 0.0026 29.9 4.9 44 4-50 140-189 (596)
388 KOG3905 Dynein light intermedi 25.5 84 0.0018 28.5 3.4 44 90-133 217-271 (473)
389 cd02036 MinD Bacterial cell di 25.2 3.3E+02 0.0071 21.2 8.4 11 31-41 64-74 (179)
390 PRK09282 pyruvate carboxylase 25.1 1.3E+02 0.0028 29.6 5.0 44 4-50 140-189 (592)
391 cd01875 RhoG RhoG subfamily. 25.0 3.3E+02 0.0072 21.8 6.9 47 61-109 74-121 (191)
392 PF00466 Ribosomal_L10: Riboso 24.4 1.4E+02 0.003 21.3 4.0 44 87-130 10-53 (100)
393 COG1163 DRG Predicted GTPase [ 24.3 1.1E+02 0.0024 27.7 3.9 41 97-143 241-281 (365)
394 PRK12330 oxaloacetate decarbox 24.1 1.5E+02 0.0032 28.6 5.0 44 4-50 141-190 (499)
395 cd01899 Ygr210 Ygr210 subfamil 24.0 82 0.0018 28.3 3.2 43 97-142 216-259 (318)
396 cd02067 B12-binding B12 bindin 23.7 1.5E+02 0.0032 21.9 4.2 38 95-132 49-87 (119)
397 PRK14327 (dimethylallyl)adenos 23.7 68 0.0015 30.9 2.8 67 61-132 73-144 (509)
398 TIGR03348 VI_IcmF type VI secr 23.4 69 0.0015 34.3 3.0 76 31-109 162-257 (1169)
399 TIGR01579 MiaB-like-C MiaB-lik 23.2 87 0.0019 29.1 3.3 71 68-143 10-83 (414)
400 PF00072 Response_reg: Respons 23.1 1.6E+02 0.0034 20.7 4.1 44 4-51 21-66 (112)
401 cd02038 FleN-like FleN is a me 23.1 3.4E+02 0.0074 20.6 8.7 37 29-75 44-80 (139)
402 KOG2749 mRNA cleavage and poly 23.0 1.9E+02 0.0041 26.6 5.1 68 28-109 210-277 (415)
403 PF11965 DUF3479: Domain of un 22.9 2E+02 0.0044 23.1 4.9 76 65-150 32-109 (164)
404 TIGR03172 probable selenium-de 22.5 1.2E+02 0.0026 25.9 3.7 56 18-78 88-143 (232)
405 KOG0395 Ras-related GTPase [Ge 22.4 4.4E+02 0.0095 21.6 8.1 98 29-143 50-157 (196)
406 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 22.3 2E+02 0.0044 24.1 5.2 47 61-109 72-119 (222)
407 PF08477 Miro: Miro-like prote 22.2 1.7E+02 0.0036 21.1 4.2 38 94-131 71-113 (119)
408 KOG0075 GTP-binding ADP-ribosy 22.1 96 0.0021 24.7 2.8 24 189-212 157-180 (186)
409 PF06265 DUF1027: Protein of u 22.0 1.3E+02 0.0027 21.4 3.1 39 192-230 10-55 (86)
410 KOG0468 U5 snRNP-specific prot 21.7 1.4E+02 0.0029 30.0 4.2 78 34-124 201-285 (971)
411 PRK11670 antiporter inner memb 21.6 5.3E+02 0.011 23.6 8.1 49 17-74 202-252 (369)
412 PRK10411 DNA-binding transcrip 21.3 43 0.00092 28.7 0.8 75 20-105 158-234 (240)
413 COG3977 Alanine-alpha-ketoisov 20.7 1.4E+02 0.0031 26.7 3.9 44 3-48 179-231 (417)
414 PRK06278 cobyrinic acid a,c-di 20.5 7.6E+02 0.016 23.6 11.3 91 29-130 317-414 (476)
415 PF10649 DUF2478: Protein of u 20.3 3.9E+02 0.0084 21.4 6.0 68 2-78 65-139 (159)
416 TIGR00347 bioD dethiobiotin sy 20.3 1.2E+02 0.0025 23.8 3.1 13 28-40 98-110 (166)
417 cd02037 MRP-like MRP (Multiple 20.1 4.3E+02 0.0093 20.6 8.3 14 28-41 66-79 (169)
No 1
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.1e-55 Score=368.02 Aligned_cols=267 Identities=42% Similarity=0.737 Sum_probs=235.8
Q ss_pred CCCCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhh
Q 023301 1 MVNNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNE 80 (284)
Q Consensus 1 eL~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~ 80 (284)
+|+|||+|||++++++.+|.++++ +++++|+|++||||+|+|+||+++||.+..+...+.|++||||||+.+....+++
T Consensus 118 ~L~NGClCCtVk~~gvraie~lvq-kkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde 196 (391)
T KOG2743|consen 118 ELRNGCLCCTVKDNGVRAIENLVQ-KKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDE 196 (391)
T ss_pred HhcCCeEEEEecchHHHHHHHHHh-cCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcc
Confidence 589999999999999999999999 5899999999999999999999999999999999999999999999999999998
Q ss_pred cCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhhhcCCCCCccccccccccc
Q 023301 81 VKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFVLGVGGYDLERIDSEVHVD 160 (284)
Q Consensus 81 ~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~~ 160 (284)
..+....+++..||++||.|++||+|+++++++..+++.|+.+|.-|+++.|.||++|+..+++...||...... ..+.
T Consensus 197 ~k~~g~i~EA~~QiA~AD~II~NKtDli~~e~~~~l~q~I~~INslA~m~~Tky~~vdlsnvLdi~ayds~ss~n-l~~k 275 (391)
T KOG2743|consen 197 EKPDGLINEATRQIALADRIIMNKTDLVSEEEVKKLRQRIRSINSLAQMIETKYSRVDLSNVLDIHAFDSESSIN-LDKK 275 (391)
T ss_pred cCcccchHHHHHHHhhhheeeeccccccCHHHHHHHHHHHHHhhhHHHhhhhhhccccHHHhcccccccccccch-hhhh
Confidence 888777788999999999999999999999999999999999999999999999999999999999998652111 1110
Q ss_pred CCcccccCCcCCCCCCCCCCCCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHH---hCCc----eEEEEEEEEecCCC
Q 023301 161 NSHCATHHHESAHGHHEGHHHNHMHDSAVSSVTIVSEGTLDLDEVDDWLERLIEE---KGED----LYRMKGILSVSGSE 233 (284)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~l~~~---~~~~----i~R~KG~v~~~~~~ 233 (284)
..| .++. ..+++.++.|+++.+++-.+.+.+..||+.++|. .... |||+||++.+.+.+
T Consensus 276 ----~~~---------~~~~-~~h~d~~i~ti~~~~~~~~~~E~~n~wl~~lLw~~~~r~eD~~~evyR~KGllsi~d~~ 341 (391)
T KOG2743|consen 276 ----LQH---------SGGT-QIHLDQSIGTITFEVPGLAKEEHLNMWLQNLLWEKNVRSEDNHMEVYRLKGLLSIKDKD 341 (391)
T ss_pred ----hcc---------CCCC-CcccCCCcceEEEEeCCccCHHHHHHHHHHHHHhhhhcccccceeEEEeeeeEEeccCC
Confidence 000 1111 1223678999999999999999999999999987 3344 99999999998889
Q ss_pred eeEEEEccceeeecCCCCCCCCCCCCccEEEEEecCCCHHHHHHHHhhhhC
Q 023301 234 QQYVFQGVHSTLDGCPGKAWGPDEKRINKLVFIGRNLDETALRKGFKGCLA 284 (284)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~IG~~ld~~~l~~~l~~c~~ 284 (284)
.++.||||...|+..| ..|+....+.++|||||++|+++.|+..|.+|+.
T Consensus 342 ~~~i~QGV~e~~e~~P-~~w~~d~~~~~kiVliGknL~re~le~~~~~~l~ 391 (391)
T KOG2743|consen 342 QQVIFQGVHELYEETP-VSWKKDFERTNKIVLIGKNLDKEILEQLFRATLT 391 (391)
T ss_pred eeEEeechhhhhccCc-ccccccccccceEEEEecccCHHHHHHHHHhhcC
Confidence 9999999999999988 7798777788899999999999999999999974
No 2
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=100.00 E-value=1.1e-53 Score=377.64 Aligned_cols=264 Identities=39% Similarity=0.702 Sum_probs=222.3
Q ss_pred CCCCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhh
Q 023301 1 MVNNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNE 80 (284)
Q Consensus 1 eL~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~ 80 (284)
||+|||||||+++++.+++.+|.+ ++.+||+|+|||||+|+|.++++++..++.++..+.|++|||||||.+|...+..
T Consensus 57 El~nGCICCT~r~dl~~~~~~L~~-~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~ 135 (323)
T COG0523 57 ELTNGCICCTVRDDLLPALERLLR-RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA 135 (323)
T ss_pred EeCCceEEEeccchhHHHHHHHHh-ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHH
Confidence 789999999999999999999998 4567999999999999999999999887789999999999999999999987653
Q ss_pred cCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhhhcCCCCCccccccccccc
Q 023301 81 VKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFVLGVGGYDLERIDSEVHVD 160 (284)
Q Consensus 81 ~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~~ 160 (284)
+..++.+||++||+||+||+|++++++++.+++.++++||.|+|+.+++|.++...+++.+.|+..+..... .
T Consensus 136 -----~~~~~~~Qia~AD~ivlNK~Dlv~~~~l~~l~~~l~~lnp~A~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~--~ 208 (323)
T COG0523 136 -----IAELAEDQLAFADVIVLNKTDLVDAEELEALEARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDRDVGRT--S 208 (323)
T ss_pred -----HHHHHHHHHHhCcEEEEecccCCCHHHHHHHHHHHHHhCCCCeEEEccccCCCHHHhhcccccccccccccc--C
Confidence 336779999999999999999999999999999999999999999999999999999998888765511100 0
Q ss_pred CCcccccCCcCCCCCCCCCCCCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHhCCceEEEEEEEEec-CCCeeEEEE
Q 023301 161 NSHCATHHHESAHGHHEGHHHNHMHDSAVSSVTIVSEGTLDLDEVDDWLERLIEEKGEDLYRMKGILSVS-GSEQQYVFQ 239 (284)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~R~KG~v~~~-~~~~~~~~~ 239 (284)
. +. +.++|.|.|.+ .++.|+++.+.+|+++++|..|+..+.+..+.+++|+||++|+. +.+.++.+|
T Consensus 209 ----~-~~------~~~~h~h~~~~-~~i~s~~~~~~~p~~~~~l~~~l~~l~~~~~~~v~R~KG~~~~~~~~~~~~~~~ 276 (323)
T COG0523 209 ----P-LF------SDHQHDHEHDE-GGISSFSVRADRPFDPERLEAFLDLLLSARGEKVLRAKGILWIAEGPPRRLVFQ 276 (323)
T ss_pred ----c-cc------cccCCCchhcc-cCceEEEEecCCCCCHHHHHHHHHHHHhhccCceEEEeeEEecCCCCCeEEEEe
Confidence 0 00 00011111111 26999999999999999999999999877778999999999998 566678899
Q ss_pred ccceeeecCC-CCCCCCCCCCccEEEEEecCCCHHHHHHHHhhhhC
Q 023301 240 GVHSTLDGCP-GKAWGPDEKRINKLVFIGRNLDETALRKGFKGCLA 284 (284)
Q Consensus 240 ~~~~~~~~~~-~~~~~~~~~~~~~lv~IG~~ld~~~l~~~l~~c~~ 284 (284)
+++..++... ...|++.+.+.+++||||++++...++..+.+|+.
T Consensus 277 ~v~~~~~~~~~~~~~~~~~~~~s~lv~Ig~~~~~~~~~~~~~~~~~ 322 (323)
T COG0523 277 GVGGVFEVPPAGREWPAEGDRKSRLVFIGRDLDDEAIREAFLAALL 322 (323)
T ss_pred cccccccccccccccccccCccceEEEEecCcchHHHHHHHHHHhc
Confidence 9999887643 34676667889999999999999999999988863
No 3
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=100.00 E-value=2.3e-52 Score=371.01 Aligned_cols=256 Identities=37% Similarity=0.609 Sum_probs=212.6
Q ss_pred CCCCceeeeeeCchHHHHHHHHHHh-h--cCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHh
Q 023301 1 MVNNGCLCCTVRGDLVKMLLQLAKK-K--QGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQH 77 (284)
Q Consensus 1 eL~~GCiCCs~~~dl~~~l~~l~~~-~--~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~ 77 (284)
||+||||||+++++|..+|.++++. + ..+||+|||||||+|+|.+|++.++.++.+...+.+++||||||+.++..+
T Consensus 59 eL~~GCiCCs~~~~l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~ 138 (318)
T PRK11537 59 TLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ 138 (318)
T ss_pred EECCCEEEEccCchHHHHHHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhh
Confidence 5899999999999999999999863 1 136999999999999999999999777788899999999999999999887
Q ss_pred hhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhhhcCCCCCcccccccc
Q 023301 78 LNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFVLGVGGYDLERIDSEV 157 (284)
Q Consensus 78 l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l~~~~~~~~~~~~~~~ 157 (284)
+.+. ..+.+||++||+||+||+|++++. +++++.++.+||.|+|+.+.+|++++..+++...|+........
T Consensus 139 ~~~~------~~~~~Qi~~AD~IvlnK~Dl~~~~--~~~~~~l~~lnp~a~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~ 210 (318)
T PRK11537 139 MNQF------TIAQSQVGYADRILLTKTDVAGEA--EKLRERLARINARAPVYTVVHGDIDLSLLFNTNGFMLEENVVST 210 (318)
T ss_pred cccc------HHHHHHHHhCCEEEEeccccCCHH--HHHHHHHHHhCCCCEEEEeccCCCCHHHHhCCCCcCcccccccc
Confidence 6542 356899999999999999999854 78999999999999999999999999999887655422110000
Q ss_pred cccCCcccccCCcCCCCCCCCCCCCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCeeEE
Q 023301 158 HVDNSHCATHHHESAHGHHEGHHHNHMHDSAVSSVTIVSEGTLDLDEVDDWLERLIEEKGEDLYRMKGILSVSGSEQQYV 237 (284)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~R~KG~v~~~~~~~~~~ 237 (284)
.. +.+++ +.|++++.|++++.++|+++++|..||+.+++..+++|||+||++|+.+.+.++.
T Consensus 211 ~~---------------~~~~~---~~~~~~i~s~~~~~~~p~~~~~l~~~L~~l~~~~~~~i~R~KG~v~~~~~~~~~~ 272 (318)
T PRK11537 211 KP---------------RFHFI---ADKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLL 272 (318)
T ss_pred Cc---------------ccccC---CcccCceEEEEEEcCCCCCHHHHHHHHHHHHHhCCCceEEeeeEEEeCCCCCEEE
Confidence 00 00000 1122479999999999999999999999999888899999999999988877889
Q ss_pred EEccceeeecCCCCCCCCCCCCccEEEEEecCCCHHHHHHHHhhhh
Q 023301 238 FQGVHSTLDGCPGKAWGPDEKRINKLVFIGRNLDETALRKGFKGCL 283 (284)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~IG~~ld~~~l~~~l~~c~ 283 (284)
||+|+..+.......|. .+++.++|||||+++|+++|++.|++|.
T Consensus 273 ~q~v~~~~~~~~~~~~~-~~~~~~~lVfIG~~ld~~~l~~~l~~l~ 317 (318)
T PRK11537 273 FQGVQRLYSADWDRPWG-DETPHSTLVFIGIQLPEEEIRAAFAGLR 317 (318)
T ss_pred EEEehhhcccCccccCC-CCCCceEEEEEcCCCCHHHHHHHHHhhc
Confidence 99999888655444674 4456789999999999999999998764
No 4
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=100.00 E-value=2.2e-50 Score=361.85 Aligned_cols=259 Identities=32% Similarity=0.514 Sum_probs=205.7
Q ss_pred CCCCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhh
Q 023301 1 MVNNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNE 80 (284)
Q Consensus 1 eL~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~ 80 (284)
||+|||||||++++|..+|.+++.. +.+||+|+|||||+|+|.+|+++|.. +.+...+.+++||||||+.++..+...
T Consensus 65 el~nGCiCCs~~~dl~~~l~~l~~~-~~~~d~IvIEtsG~a~P~~i~~~~~~-~~l~~~~~l~~vvtvVDa~~~~~~~~~ 142 (341)
T TIGR02475 65 ELANGCICCTVADDFIPTMTKLLAR-RQRPDHILIETSGLALPKPLVQAFQW-PEIRSRVTVDGVVTVVDGPAVAAGRFA 142 (341)
T ss_pred EeCCCCccccCcHHHHHHHHHHHhc-cCCCCEEEEeCCCCCCHHHHHHHhcC-ccccceEEeeeEEEEEECchhhhhccc
Confidence 5899999999999999999999862 57899999999999999999999854 678889999999999999987642110
Q ss_pred c----------------CCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCC-CceeeeccCCCChhhhh
Q 023301 81 V----------------KPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAM-APVKLAKYGSVDMDFVL 143 (284)
Q Consensus 81 ~----------------~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~-a~i~~~~~g~v~~~~l~ 143 (284)
. ..+.+...+.+||++||+||+||+|++++++++.+++.|+++||. ++|+.+.+|++++..++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~~l~~~~~~l~~~~~~~a~i~~~~~~~v~~~~ll 222 (341)
T TIGR02475 143 ADPDALDAQRAADDNLDHETPLEELFEDQLACADLVILNKADLLDAAGLARVRAEIAAELPRAVKIVEASHGEVDARVLL 222 (341)
T ss_pred cchhhhhhhccccccccccchHHHHHHHHHHhCCEEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEEcccCCCCHHHHh
Confidence 0 011233466899999999999999999999999999999998885 68999999999999999
Q ss_pred cCCCCCcccccccccccCCcccccCCcCCCCCCCCCCCCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHhCCceEEE
Q 023301 144 GVGGYDLERIDSEVHVDNSHCATHHHESAHGHHEGHHHNHMHDSAVSSVTIVSEGTLDLDEVDDWLERLIEEKGEDLYRM 223 (284)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~R~ 223 (284)
+...++...... . ..+ ++. + .+ +.|.| +++.|++++.++|+++++|..||+.+++ +.+|||+
T Consensus 223 ~~~~~~~~~~~~--~------~~~-~~~---~--~~-~~~~~-~~i~s~~~~~~~p~~~~~~~~~L~~l~~--~~~i~R~ 284 (341)
T TIGR02475 223 GLGAAAEDDLDN--R------PSH-HDF---E--GG-EEHDH-DEFDSVVVDLGEVADPAALRQRLERLAE--EHDVLRI 284 (341)
T ss_pred CCCCcChhhhhc--C------ccc-ccc---c--CC-CCCCC-CCEEEEEEEcCCCCCHHHHHHHHHhhcc--cCceEEe
Confidence 875443211100 0 000 000 0 00 11222 4799999999999999999999999863 2579999
Q ss_pred EEEEEecCCCeeEEEEccceeeecCCCCCCCCCCCCccEEEEEecC-CCHHHHHHHH
Q 023301 224 KGILSVSGSEQQYVFQGVHSTLDGCPGKAWGPDEKRINKLVFIGRN-LDETALRKGF 279 (284)
Q Consensus 224 KG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~IG~~-ld~~~l~~~l 279 (284)
||++|+.+.+.++.||+|+..++......|.+.+++.++|||||++ ++++.|++.|
T Consensus 285 KGiv~~~~~~~~~~~q~v~~~~~~~~~~~~~~~~~~~~~lV~IG~~~ld~~~l~~~l 341 (341)
T TIGR02475 285 KGFAAVPGKPMRLLVQGVGQRVDSYYDRPWQAAETRQTRLVVIGLHDLDQAAIRAAL 341 (341)
T ss_pred eEEEEeCCCCcEEEEEcccceeccCcccCCCCCCCCCceEEEEecCCCCHHHHHhhC
Confidence 9999999888889999999988765555686555667899999999 9999998764
No 5
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=99.95 E-value=1.5e-28 Score=202.13 Aligned_cols=119 Identities=41% Similarity=0.710 Sum_probs=98.5
Q ss_pred CCCCceeeeeeCchHHHHHHHHHHhhcC--CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhh
Q 023301 1 MVNNGCLCCTVRGDLVKMLLQLAKKKQG--QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHL 78 (284)
Q Consensus 1 eL~~GCiCCs~~~dl~~~l~~l~~~~~~--~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l 78 (284)
+|+|||+||+++++|..+|.++.. .+ +||+||||+||+++|.++ .+. .+.+...+.++.+|+||||.+|...
T Consensus 56 ~l~~gcicc~~~~~~~~~l~~l~~--~~~~~~d~IiIE~sG~a~p~~l--~~~-~~~~~~~~~~~~iI~vVDa~~~~~~- 129 (178)
T PF02492_consen 56 ELNNGCICCTLRDDLVEALRRLLR--EYEERPDRIIIETSGLADPAPL--ILQ-DPPLKEDFRLDSIITVVDATNFDEL- 129 (178)
T ss_dssp EECTTTESS-TTS-HHHHHHHHCC--CCHGC-SEEEEEEECSSGGGGH--HHH-SHHHHHHESESEEEEEEEGTTHGGH-
T ss_pred EecCCCcccccHHHHHHHHHHHHH--hcCCCcCEEEECCccccccchh--hhc-cccccccccccceeEEecccccccc-
Confidence 478999999999999999999998 67 899999999999999998 222 5678889999999999999998433
Q ss_pred hhcCCccchHHHHHHHhhcCEEEEccCCCCChhH-HHHHHHHHHHhCCCCcee
Q 023301 79 NEVKPRFVVNEAVEQVAYADRIILNKIDLVTETE-LGSLTERIKHINAMAPVK 130 (284)
Q Consensus 79 ~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~-~~~~~~~l~~~np~a~i~ 130 (284)
.+ ....+.+||++||+||+||+|++++++ ++++++.++++||.|+|+
T Consensus 130 ~~-----~~~~~~~Qi~~ADvIvlnK~D~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 130 EN-----IPELLREQIAFADVIVLNKIDLVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp TT-----HCHHHHHHHCT-SEEEEE-GGGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred cc-----chhhhhhcchhcCEEEEeccccCChhhHHHHHHHHHHHHCCCCEEe
Confidence 22 236679999999999999999999884 599999999999999986
No 6
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=99.91 E-value=1.4e-24 Score=175.02 Aligned_cols=101 Identities=60% Similarity=0.961 Sum_probs=89.1
Q ss_pred CCCCceeeeeeCchHHHHHHHHHHh---hcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHh
Q 023301 1 MVNNGCLCCTVRGDLVKMLLQLAKK---KQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQH 77 (284)
Q Consensus 1 eL~~GCiCCs~~~dl~~~l~~l~~~---~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~ 77 (284)
||+|||+||+++++|..+|.++++. +.++||+|||||||+++|.++++.++.++.+...+.++.+++|||+.++..+
T Consensus 55 ~l~~GCiCC~~~~~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~ 134 (158)
T cd03112 55 EMNNGCICCTVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQH 134 (158)
T ss_pred EeCCCEeEeeCchhHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHH
Confidence 5899999999999999999766541 2578999999999999999999988766778889999999999999999998
Q ss_pred hhhcCCccchHHHHHHHhhcCEEEEccCCC
Q 023301 78 LNEVKPRFVVNEAVEQVAYADRIILNKIDL 107 (284)
Q Consensus 78 l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~ 107 (284)
++++ +.+.+||++||+||+||+|+
T Consensus 135 ~~~~------~~~~~Qi~~ad~ivlnk~dl 158 (158)
T cd03112 135 LDQQ------TEAQSQIAFADRILLNKTDL 158 (158)
T ss_pred hhcc------HHHHHHHHHCCEEEEecccC
Confidence 7653 46789999999999999996
No 7
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=99.79 E-value=5.4e-19 Score=130.08 Aligned_cols=91 Identities=41% Similarity=0.719 Sum_probs=69.3
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCeeEEEEccceeeecCCCCC-CCC--CCCCccEEEE
Q 023301 189 VSSVTIVSEGTLDLDEVDDWLERLIEEKGEDLYRMKGILSVSGSEQQYVFQGVHSTLDGCPGKA-WGP--DEKRINKLVF 265 (284)
Q Consensus 189 ~~s~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~R~KG~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~lv~ 265 (284)
|.|+++..++|+++++|..||+. .+++|||+||++++++.+..+.||++++.+++.+... |.+ ..++.++|||
T Consensus 1 i~s~~~~~~~p~~~~~l~~~l~~----~~~~vlR~KG~v~~~~~~~~~~~q~v~~~~~~~~~~~~~~~~~~~~~~~~lV~ 76 (94)
T PF07683_consen 1 ISSVTFEFDRPFDPERLEAWLQE----LPGDVLRAKGIVWVADGPRRLVFQGVGGRYDIEPAGRWWPPMLGEDRDSRLVF 76 (94)
T ss_dssp EEEEEEEESS-B-HHHHHHHHHH----TTTTEEEEEEEE-BTT-SEEEEEEEETTEEEEE-EEEE-TT---S---EEEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHh----CCCCEEEEEEEEEeCCcCeEEEEEeeCCEEEecccccccccccCCCCCeEEEE
Confidence 67999999999999999999998 3599999999999998877899999999998876543 433 3567899999
Q ss_pred EecCCCHHHHHHHHhhhh
Q 023301 266 IGRNLDETALRKGFKGCL 283 (284)
Q Consensus 266 IG~~ld~~~l~~~l~~c~ 283 (284)
||+++|+++|++.|++||
T Consensus 77 IG~~ld~~~l~~~l~~cl 94 (94)
T PF07683_consen 77 IGKNLDKEALREALDACL 94 (94)
T ss_dssp EEES--HHHHHHHHHT--
T ss_pred EECCCCHHHHHHHHHccC
Confidence 999999999999999997
No 8
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=99.77 E-value=7e-18 Score=123.57 Aligned_cols=91 Identities=31% Similarity=0.485 Sum_probs=80.1
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHHHHhCCceEEEEEEEEecCCC-eeEEEEccceeeecCCCCCCCCCCCCccEEEEEe
Q 023301 189 VSSVTIVSEGTLDLDEVDDWLERLIEEKGEDLYRMKGILSVSGSE-QQYVFQGVHSTLDGCPGKAWGPDEKRINKLVFIG 267 (284)
Q Consensus 189 ~~s~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~R~KG~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~IG 267 (284)
+.|+++..+.|+++++|..||+.++ ++|+|+||++++.+.+ .++.||++++.++..+...|.+.+++.++|||||
T Consensus 1 ~~s~~~~~~~~~~~~~l~~~l~~l~----~~i~R~KG~v~~~~~~~~~~~~q~v~~~~~~~~~~~~~~~~~~~~~lV~IG 76 (92)
T smart00833 1 ISSFVYRARRPFHPQRLLAALDELP----EGVLRAKGFFWLASRPDLPGVLSGAGGRLRIEPAGAWPAAGDRRTRLVFIG 76 (92)
T ss_pred CEEEEEecCCCCCHHHHHHHHHhcc----CCeEEEEEEEEeCCCCCeEEEEEccCCeeEcccCCCCCCCCCcceEEEEEe
Confidence 3678899999999999999999886 7899999999998765 6689999999988876667876556678999999
Q ss_pred cCCCHHHHHHHHhhhh
Q 023301 268 RNLDETALRKGFKGCL 283 (284)
Q Consensus 268 ~~ld~~~l~~~l~~c~ 283 (284)
+++|++.|++.|.+|+
T Consensus 77 ~~l~~~~l~~~l~~~~ 92 (92)
T smart00833 77 RDLDEEAIRAALDACL 92 (92)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 9999999999999985
No 9
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.60 E-value=2.7e-15 Score=125.38 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=88.9
Q ss_pred CCceeeeeeCchHH---HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhh
Q 023301 3 NNGCLCCTVRGDLV---KMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLN 79 (284)
Q Consensus 3 ~~GCiCCs~~~dl~---~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~ 79 (284)
.|||+||+.++++. .+|.++.. +..++|+|+||++|.. +...+ .+.+ .+.+|+|+|+.++.....
T Consensus 63 ~~g~~~~~~~~~~~~~~~~L~~l~~-~~~~~D~iiIEt~G~~----l~~~~--~~~l-----~~~~i~vvD~~~~~~~~~ 130 (199)
T TIGR00101 63 TGGCPHTAIREDASMNLEAVAEMEA-RFPPLEMVFIESGGDN----LSATF--SPEL-----ADLTIFVIDVAAGDKIPR 130 (199)
T ss_pred cCCCccceeccCHHHHHHHHHHHHh-cCCCCCEEEEECCCCC----ccccc--chhh-----hCcEEEEEEcchhhhhhh
Confidence 68999999999994 55666654 1347999999999962 22222 1222 356899999998765321
Q ss_pred hcCCccchHHHHHHHhhcCEEEEccCCCCC--hhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 80 EVKPRFVVNEAVEQVAYADRIILNKIDLVT--ETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 80 ~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~--~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
....|+..||++++||+|+.+ +++++.+.+.++.+||.++++.++. .....+.++
T Consensus 131 ---------~~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~ 188 (199)
T TIGR00101 131 ---------KGGPGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVI 188 (199)
T ss_pred ---------hhHhHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHH
Confidence 124799999999999999986 3678899999999999999998763 344455444
No 10
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.49 E-value=7e-14 Score=121.78 Aligned_cols=119 Identities=20% Similarity=0.223 Sum_probs=86.6
Q ss_pred CCCCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCC-CCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhh
Q 023301 1 MVNNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGL-AKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLN 79 (284)
Q Consensus 1 eL~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~-a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~ 79 (284)
++++||+||..+.++..++..|.. .+.|+||||++|. +.|..+ .+...+.+ +|++.......
T Consensus 159 qi~tG~~Chl~a~mv~~Al~~L~~---~~~d~liIEnvGnLvcPa~f--------dlge~~~v----~vlsV~eg~dk-- 221 (290)
T PRK10463 159 QVNTGKGCHLDAQMIADAAPRLPL---DDNGILFIENVGNLVCPASF--------DLGEKHKV----AVLSVTEGEDK-- 221 (290)
T ss_pred EecCCCCCcCcHHHHHHHHHHHhh---cCCcEEEEECCCCccCCCcc--------chhhceeE----EEEECcccccc--
Confidence 478999999999999999998865 5789999999995 677742 23333443 44444433211
Q ss_pred hcCCccchHHHHHHHhhcCEEEEccCCCCC--hhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 80 EVKPRFVVNEAVEQVAYADRIILNKIDLVT--ETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 80 ~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~--~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+ .....|++.||+|||||+|+++ ..+++.+.+.++++||.++|+.++. .....+.|.
T Consensus 222 ---p----lKyp~~f~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~ 281 (290)
T PRK10463 222 ---P----LKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWL 281 (290)
T ss_pred ---c----hhccchhhcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHH
Confidence 1 1124799999999999999987 4578889999999999999998653 334444443
No 11
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.45 E-value=2.3e-13 Score=114.61 Aligned_cols=119 Identities=23% Similarity=0.259 Sum_probs=80.2
Q ss_pred CCCCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCC-CCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhh
Q 023301 1 MVNNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTG-LAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLN 79 (284)
Q Consensus 1 eL~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG-~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~ 79 (284)
++++||+||....++..++.++.. .++|+|+||||| +..|... .+...+ .++|+|+......+.
T Consensus 77 ~l~~gcic~~~~~~~~~~l~~~~~---~~~d~IiIEt~G~l~~~~~~--------~~~~~~----~i~Vvd~~~~d~~~~ 141 (207)
T TIGR00073 77 QINTGKECHLDAHMVAHALEDLPL---DDIDLLFIENVGNLVCPADF--------DLGEHM----RVVLLSVTEGDDKPL 141 (207)
T ss_pred EEcCCCcccCChHHHHHHHHHhcc---CCCCEEEEecCCCcCCCccc--------ccccCe----EEEEEecCcccchhh
Confidence 478999999776666666765543 478999999999 4444311 111222 247888875432211
Q ss_pred hcCCccchHHHHHHHhhcCEEEEccCCCCCh--hHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 80 EVKPRFVVNEAVEQVAYADRIILNKIDLVTE--TELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 80 ~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~--~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
....++..|++|++||+|+.+. .+...+.+.++++||.++++.++. .......++
T Consensus 142 ---------~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~ 199 (207)
T TIGR00073 142 ---------KYPGMFKEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWL 199 (207)
T ss_pred ---------hhHhHHhhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHH
Confidence 1246788999999999999864 346778888999999999987753 333444443
No 12
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.38 E-value=6.9e-07 Score=72.95 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhcCCCCEEEEecCC-CCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH
Q 023301 15 LVKMLLQLAKKKQGQFDHIVIETTG-LAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ 93 (284)
Q Consensus 15 l~~~l~~l~~~~~~~~d~iiIE~sG-~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q 93 (284)
...++.++..+ ....|.+|||.-| ++.|.. |.+.+.+ -|+|+|...-.....-.+ .-
T Consensus 83 ~~~ai~~l~~~-~~~~Dll~iEs~GNL~~~~s--------p~L~d~~----~v~VidvteGe~~P~K~g---------P~ 140 (202)
T COG0378 83 NLEAIEELVLD-FPDLDLLFIESVGNLVCPFS--------PDLGDHL----RVVVIDVTEGEDIPRKGG---------PG 140 (202)
T ss_pred HHHHHHHHhhc-CCcCCEEEEecCcceecccC--------cchhhce----EEEEEECCCCCCCcccCC---------Cc
Confidence 36678888872 2237999999999 555532 4443323 588999987543211111 22
Q ss_pred HhhcCEEEEccCCCCChhH--HHHHHHHHHHhCCCCceeeecc
Q 023301 94 VAYADRIILNKIDLVTETE--LGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 94 i~~Ad~ivlnK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~ 134 (284)
+..||++||||+|+++.-. ++.+.+.+++.||+++|+.++.
T Consensus 141 i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ 183 (202)
T COG0378 141 IFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNL 183 (202)
T ss_pred eeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeC
Confidence 3349999999999987544 5889999999999999998863
No 13
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.33 E-value=5.4e-06 Score=74.37 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=63.1
Q ss_pred eeeeCc--hHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCcc
Q 023301 8 CCTVRG--DLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRF 85 (284)
Q Consensus 8 CCs~~~--dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~ 85 (284)
||.+.+ +......+++. ...+|+|||||.|+......+-. ..|.++.|+++..-.. +.
T Consensus 127 ~~~l~~~a~~~~~~~~~~~--~~g~d~viieT~Gv~qs~~~i~~-----------~aD~vlvv~~p~~gd~-iq------ 186 (332)
T PRK09435 127 SGTLGGVARKTRETMLLCE--AAGYDVILVETVGVGQSETAVAG-----------MVDFFLLLQLPGAGDE-LQ------ 186 (332)
T ss_pred cccccchHHHHHHHHHHHh--ccCCCEEEEECCCCccchhHHHH-----------hCCEEEEEecCCchHH-HH------
Confidence 788764 34444444555 57899999999999976543211 2344666766444222 11
Q ss_pred chHHHHHHHhhcCEEEEccCCCCChhHHHH----HHHHHHHhCCC-----Cceeeec
Q 023301 86 VVNEAVEQVAYADRIILNKIDLVTETELGS----LTERIKHINAM-----APVKLAK 133 (284)
Q Consensus 86 ~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~----~~~~l~~~np~-----a~i~~~~ 133 (284)
.....+++.||++|+||+|+.+.....+ +++.++-.+|. .+|+.++
T Consensus 187 --~~k~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vS 241 (332)
T PRK09435 187 --GIKKGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCS 241 (332)
T ss_pred --HHHhhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEE
Confidence 1224599999999999999987544333 34444433332 4566544
No 14
>COG2403 Predicted GTPase [General function prediction only]
Probab=98.22 E-value=3.7e-06 Score=74.70 Aligned_cols=94 Identities=24% Similarity=0.271 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH
Q 023301 13 GDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE 92 (284)
Q Consensus 13 ~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~ 92 (284)
.+|..-|.+-.. .-|.|+.|.+|-+.|- +.-+..|+|+||.+....+.++- -.-
T Consensus 212 vdy~~vlke~~~----~aD~IlwdGgnndfPf---------------vkpd~~Ivvvda~rpg~ei~~~p-------Ge~ 265 (449)
T COG2403 212 VDYGTVLKEGEK----EADFILWDGGNNDFPF---------------VKPDLHIVVVDALRPGEEIGSFP-------GEL 265 (449)
T ss_pred eeHHHHHHHHhh----hccEEEEeCCCCCCCc---------------ccCCeeEEEecCCCCchhhccCC-------Cce
Confidence 456666666654 2399999999988873 22334799999999776655431 135
Q ss_pred HHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeee
Q 023301 93 QVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLA 132 (284)
Q Consensus 93 Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~ 132 (284)
.|..||+|++||+|.+..+++.++.+.++++||+|.|+.+
T Consensus 266 ~irlAD~VIItkveea~~~kvrkI~~~I~~iNP~A~Vi~~ 305 (449)
T COG2403 266 RIRLADLVIITKVEEAMAEKVRKIVRNIEEINPKAEVILA 305 (449)
T ss_pred eeeeccEEEEecccccchHHHHHHHHHHHhhCCCcEEEec
Confidence 7889999999999999999999999999999999999877
No 15
>COG1159 Era GTPase [General function prediction only]
Probab=98.09 E-value=7.9e-06 Score=70.98 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=77.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh---cCEEEEcc
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY---ADRIILNK 104 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~---Ad~ivlnK 104 (284)
.+.+.|||.|+|+..|..-+..++........-.++.+++|||+..-... ++ ..+.+|+.. ..++++||
T Consensus 52 ~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~----~d----~~il~~lk~~~~pvil~iNK 123 (298)
T COG1159 52 DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP----GD----EFILEQLKKTKTPVILVVNK 123 (298)
T ss_pred CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc----cH----HHHHHHHhhcCCCeEEEEEc
Confidence 47899999999999999888877765555566789999999999883221 12 233566644 78999999
Q ss_pred CCCCChhH-HHHHHHHHHHhCCCCceeeecc
Q 023301 105 IDLVTETE-LGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 105 ~D~~~~~~-~~~~~~~l~~~np~a~i~~~~~ 134 (284)
+|.++++. +..+.+.++..-|..+++..+.
T Consensus 124 ID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA 154 (298)
T COG1159 124 IDKVKPKTVLLKLIAFLKKLLPFKEIVPISA 154 (298)
T ss_pred cccCCcHHHHHHHHHHHHhhCCcceEEEeec
Confidence 99998888 6788888888889999987764
No 16
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.79 E-value=7.7e-05 Score=59.13 Aligned_cols=100 Identities=24% Similarity=0.356 Sum_probs=63.4
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+.++++++++|+.++...................+.++.|+|+.....+.. ..+. ....+.....++|+||+|+.
T Consensus 50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~----~~~~-~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGD----EFIL-ELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchH----HHHH-HHHHHhCCCEEEEEEchhcc
Confidence 457899999999988765433211111222346678999999988622111 1111 11223346789999999998
Q ss_pred -ChhHHHHHHHHHHHhCCCCceeeec
Q 023301 109 -TETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 109 -~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
+.+++....+.++..++..+++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~s 150 (168)
T cd04163 125 KDKEDLLPLLEKLKELGPFAEIFPIS 150 (168)
T ss_pred ccHHHHHHHHHHHHhccCCCceEEEE
Confidence 5667777778887777766776554
No 17
>PRK00089 era GTPase Era; Reviewed
Probab=97.63 E-value=0.00021 Score=63.18 Aligned_cols=98 Identities=23% Similarity=0.302 Sum_probs=63.8
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKI 105 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~ 105 (284)
..+.++++|+|+.++...+...............+.++.|+|+...... .. ..+.+++ ....++|+||+
T Consensus 52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~----~~----~~i~~~l~~~~~pvilVlNKi 123 (292)
T PRK00089 52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGP----GD----EFILEKLKKVKTPVILVLNKI 123 (292)
T ss_pred CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCh----hH----HHHHHHHhhcCCCEEEEEECC
Confidence 4688999999999987554432221122233468889999999872111 00 1223333 45789999999
Q ss_pred CCC-ChhHHHHHHHHHHHhCCCCceeeecc
Q 023301 106 DLV-TETELGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 106 D~~-~~~~~~~~~~~l~~~np~a~i~~~~~ 134 (284)
|+. +.+++....+.+++..+..+++.++.
T Consensus 124 Dl~~~~~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 124 DLVKDKEELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred cCCCCHHHHHHHHHHHHhhCCCCeEEEecC
Confidence 998 55666667777776667777876653
No 18
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.42 E-value=0.0012 Score=57.77 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=40.9
Q ss_pred cCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 27 QGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
-..+|.|||||.|++....-+-.. .+.++.|.=+.. -.. +...-..-++.||++||||.|
T Consensus 141 AaG~DvIIVETVGvGQsev~I~~~-----------aDt~~~v~~pg~-GD~--------~Q~iK~GimEiaDi~vINKaD 200 (323)
T COG1703 141 AAGYDVIIVETVGVGQSEVDIANM-----------ADTFLVVMIPGA-GDD--------LQGIKAGIMEIADIIVINKAD 200 (323)
T ss_pred hcCCCEEEEEecCCCcchhHHhhh-----------cceEEEEecCCC-CcH--------HHHHHhhhhhhhheeeEeccC
Confidence 579999999999999976433221 233444443322 211 112235788999999999999
Q ss_pred CCC
Q 023301 107 LVT 109 (284)
Q Consensus 107 ~~~ 109 (284)
.-.
T Consensus 201 ~~~ 203 (323)
T COG1703 201 RKG 203 (323)
T ss_pred hhh
Confidence 644
No 19
>PRK13768 GTPase; Provisional
Probab=97.27 E-value=0.00083 Score=58.28 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=52.6
Q ss_pred cCCCCEEEEecCCCCCcHHH---HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEc
Q 023301 27 QGQFDHIVIETTGLAKPAPV---IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILN 103 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~~i---~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivln 103 (284)
..+.|+|+|+++|..++... ...+. ..+.... -+.++.|+|+........-............+....-++|+|
T Consensus 94 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~--~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~n 170 (253)
T PRK13768 94 SLDADYVLVDTPGQMELFAFRESGRKLV--ERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLN 170 (253)
T ss_pred hcCCCEEEEeCCcHHHHHhhhHHHHHHH--HHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 46679999999999887542 11111 1121111 567999999976432111000000000111245567789999
Q ss_pred cCCCCChhHHHHHHHHHH
Q 023301 104 KIDLVTETELGSLTERIK 121 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~ 121 (284)
|+|+.+..+.+.+.+.++
T Consensus 171 K~D~~~~~~~~~~~~~l~ 188 (253)
T PRK13768 171 KADLLSEEELERILKWLE 188 (253)
T ss_pred hHhhcCchhHHHHHHHHh
Confidence 999998877666655444
No 20
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.27 E-value=0.00079 Score=57.83 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=48.1
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEE
Q 023301 21 QLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRI 100 (284)
Q Consensus 21 ~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~i 100 (284)
.++. ...+|+|||||.|++.-.--+..+ .|.++.|+-|.. -..+.. .-..=++.||++
T Consensus 115 ~ll~--aaG~D~IiiETVGvGQsE~~I~~~-----------aD~~v~v~~Pg~-GD~iQ~--------~KaGimEiaDi~ 172 (266)
T PF03308_consen 115 RLLD--AAGFDVIIIETVGVGQSEVDIADM-----------ADTVVLVLVPGL-GDEIQA--------IKAGIMEIADIF 172 (266)
T ss_dssp HHHH--HTT-SEEEEEEESSSTHHHHHHTT-----------SSEEEEEEESST-CCCCCT--------B-TTHHHH-SEE
T ss_pred HHHH--HcCCCEEEEeCCCCCccHHHHHHh-----------cCeEEEEecCCC-ccHHHH--------HhhhhhhhccEE
Confidence 3444 578999999999999976433221 233455555533 211111 113567789999
Q ss_pred EEccCCCCChhH-HHHHHHHHHHhCC-----CCceeeec
Q 023301 101 ILNKIDLVTETE-LGSLTERIKHINA-----MAPVKLAK 133 (284)
Q Consensus 101 vlnK~D~~~~~~-~~~~~~~l~~~np-----~a~i~~~~ 133 (284)
|+||+|....+. ...++..++-..+ ..+|+.++
T Consensus 173 vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 173 VVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp EEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred EEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence 999999643333 3444555543332 23566554
No 21
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.18 E-value=0.0058 Score=54.37 Aligned_cols=71 Identities=20% Similarity=0.249 Sum_probs=43.4
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCE
Q 023301 20 LQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADR 99 (284)
Q Consensus 20 ~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ 99 (284)
.++++ ...+|+|||||+|++.+.. +.+ -..+.++.+.++... ..+.. ........+++
T Consensus 119 ~~~l~--~~g~D~viidT~G~~~~e~--~i~---------~~aD~i~vv~~~~~~-~el~~--------~~~~l~~~~~i 176 (300)
T TIGR00750 119 ILLLD--AAGYDVIIVETVGVGQSEV--DIA---------NMADTFVVVTIPGTG-DDLQG--------IKAGLMEIADI 176 (300)
T ss_pred HHHHH--hCCCCEEEEeCCCCchhhh--HHH---------HhhceEEEEecCCcc-HHHHH--------HHHHHhhhccE
Confidence 33445 5789999999999996552 111 123445555544432 22221 11345678899
Q ss_pred EEEccCCCCChhH
Q 023301 100 IILNKIDLVTETE 112 (284)
Q Consensus 100 ivlnK~D~~~~~~ 112 (284)
||+||+|+.+.+.
T Consensus 177 vv~NK~Dl~~~~~ 189 (300)
T TIGR00750 177 YVVNKADGEGATN 189 (300)
T ss_pred EEEEcccccchhH
Confidence 9999999987654
No 22
>PRK15494 era GTPase Era; Provisional
Probab=96.82 E-value=0.0025 Score=57.72 Aligned_cols=108 Identities=17% Similarity=0.227 Sum_probs=62.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
.+.+|++|+|+.++..-+........+...-..+.+++|+|+........ ..+.. ...+....-++|+||+|+.+
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~----~~il~-~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDIT----HNILD-KLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHH----HHHHH-HHHhcCCCEEEEEEhhcCcc
Confidence 45689999999876432222111111122346788999999876322111 11111 12333456789999999965
Q ss_pred hhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 110 ETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 110 ~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
. .+..+.+.++..++...++.++. .....+.++
T Consensus 175 ~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~ 208 (339)
T PRK15494 175 K-YLNDIKAFLTENHPDSLLFPISALSGKNIDGLL 208 (339)
T ss_pred c-cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHH
Confidence 4 45667777777777777877654 223444444
No 23
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.81 E-value=0.0041 Score=54.44 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=58.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D 106 (284)
...+|++|+|+..+..-+............-..+.++.|+|+....... ..+..++. ..-++|+||+|
T Consensus 48 ~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~---------~~i~~~l~~~~~p~ilV~NK~D 118 (270)
T TIGR00436 48 SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG---------EFVLTKLQNLKRPVVLTRNKLD 118 (270)
T ss_pred cEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH---------HHHHHHHHhcCCCEEEEEECee
Confidence 4578999999987632221111101111223677899999998743210 11233443 34588999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+.+++......+....+..+++.+|. .....+.++
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 119 NKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 9876555444444444445456776653 233454444
No 24
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.70 E-value=0.0056 Score=48.77 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=57.1
Q ss_pred CCCEEEEecCCCCCcHHHHHHh---cccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 29 QFDHIVIETTGLAKPAPVIETF---CTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l---~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
..++.+|+++|..++...-..+ .....+...-..+.++.|+|+.+...... ..+. ....+....-++++||+
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~----~~~~-~~~~~~~~~~iiv~nK~ 123 (174)
T cd01895 49 GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQD----LRIA-GLILEEGKALVIVVNKW 123 (174)
T ss_pred CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhH----HHHH-HHHHhcCCCEEEEEecc
Confidence 3567899999998764321111 00001111235678999999977533211 0010 11222345678899999
Q ss_pred CCCCh--hHHHHHHHHHHHhCC---CCceeeec
Q 023301 106 DLVTE--TELGSLTERIKHINA---MAPVKLAK 133 (284)
Q Consensus 106 D~~~~--~~~~~~~~~l~~~np---~a~i~~~~ 133 (284)
|+.+. ...+.+.+.+++..+ ..+++.++
T Consensus 124 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (174)
T cd01895 124 DLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS 156 (174)
T ss_pred ccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence 99876 567777777776654 35565554
No 25
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.56 E-value=0.0081 Score=48.75 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=50.0
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
..+.+|++++|..+........ + -..+.++.|+|+......... ... ....+....-++++||+|+.
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~~~~~~----~~~-~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRG-----L---SVSDGAILVVDANEGVQPQTR----EHL-RIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHH-----H---HhcCEEEEEEECCCCCcHHHH----HHH-HHHHHCCCCeEEEEECCCCc
Confidence 3578999999987754432221 1 257789999999764321100 010 11233456779999999998
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
+++++....+.+++.
T Consensus 128 ~~~~~~~~~~~~~~~ 142 (189)
T cd00881 128 GEEDLEEVLREIKEL 142 (189)
T ss_pred chhcHHHHHHHHHHH
Confidence 866655555555543
No 26
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.49 E-value=0.019 Score=45.51 Aligned_cols=66 Identities=18% Similarity=0.331 Sum_probs=40.3
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC
Q 023301 19 LLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD 98 (284)
Q Consensus 19 l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad 98 (284)
+.+.++ ..++|+||||+.|+.... ...+. .-+-+|.|+.+.-.-.| .-.-..-++.||
T Consensus 83 ~~~~~~--~~~~D~iiIDtaG~~~~~--~~~~~---------~Ad~~ivv~tpe~~D~y---------~~~k~~~~~~~~ 140 (148)
T cd03114 83 VIRVLD--AAGFDVIIVETVGVGQSE--VDIAS---------MADTTVVVMAPGAGDDI---------QAIKAGIMEIAD 140 (148)
T ss_pred HHHHHH--hcCCCEEEEECCccChhh--hhHHH---------hCCEEEEEECCCchhHH---------HHhhhhHhhhcC
Confidence 334454 458999999999987433 22221 12235666666622111 011246788899
Q ss_pred EEEEccCC
Q 023301 99 RIILNKID 106 (284)
Q Consensus 99 ~ivlnK~D 106 (284)
++++||+|
T Consensus 141 ~~~~~k~~ 148 (148)
T cd03114 141 IVVVNKAD 148 (148)
T ss_pred EEEEeCCC
Confidence 99999997
No 27
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.41 E-value=0.0033 Score=52.92 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=58.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC-
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV- 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~- 108 (284)
....++.++|..+....... .....+.+++|+|+......... ..... ..+...+.++|+||+|++
T Consensus 71 ~~i~iiDtpG~~~f~~~~~~--------~~~~aD~~llVvD~~~~~~~~~~----~~~~~-~~~~~~p~iiviNK~D~~~ 137 (213)
T cd04167 71 YLFNIIDTPGHVNFMDEVAA--------ALRLSDGVVLVVDVVEGVTSNTE----RLIRH-AILEGLPIVLVINKIDRLI 137 (213)
T ss_pred EEEEEEECCCCcchHHHHHH--------HHHhCCEEEEEEECCCCCCHHHH----HHHHH-HHHcCCCEEEEEECcccCc
Confidence 56688999998875432211 12356789999999764322110 01011 122236789999999986
Q ss_pred ------ChhHHHHHHHHHHHhCCCCceeee
Q 023301 109 ------TETELGSLTERIKHINAMAPVKLA 132 (284)
Q Consensus 109 ------~~~~~~~~~~~l~~~np~a~i~~~ 132 (284)
+.+..+++.+.++++||.+..+..
T Consensus 138 ~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~ 167 (213)
T cd04167 138 LELKLPPNDAYFKLRHIIDEVNNIIASFST 167 (213)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445678899999999998776543
No 28
>PRK09866 hypothetical protein; Provisional
Probab=96.34 E-value=0.014 Score=56.50 Aligned_cols=104 Identities=11% Similarity=0.068 Sum_probs=60.3
Q ss_pred CCCCEEEEecCCCCCcHHH-HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh-----cCEEE
Q 023301 28 GQFDHIVIETTGLAKPAPV-IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY-----ADRII 101 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i-~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~-----Ad~iv 101 (284)
...+.|||.|+|+..|..- +...... ..-..+.|++|||+.+.... .++ .+.+.++. .-++|
T Consensus 228 ~~~QIIFVDTPGIhk~~~~~L~k~M~e----qL~eADvVLFVVDat~~~s~----~De----eIlk~Lkk~~K~~PVILV 295 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQPHLQKMLNQ----QLARASAVLAVLDYTQLKSI----SDE----EVREAILAVGQSVPLYVL 295 (741)
T ss_pred ccCCEEEEECCCCCCccchHHHHHHHH----HHhhCCEEEEEEeCCCCCCh----hHH----HHHHHHHhcCCCCCEEEE
Confidence 4678999999999987422 3222221 23356889999999874321 111 12333332 55678
Q ss_pred EccCCCCChhH--HHHHHHHHHHh-----CCCCceeeecc-CCCChhhhh
Q 023301 102 LNKIDLVTETE--LGSLTERIKHI-----NAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 102 lnK~D~~~~~~--~~~~~~~l~~~-----np~a~i~~~~~-g~v~~~~l~ 143 (284)
+||+|..+.+. .+.+++.++.. .+...|+..|. -....+.++
T Consensus 296 VNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LL 345 (741)
T PRK09866 296 VNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRAR 345 (741)
T ss_pred EEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHH
Confidence 99999976222 45555555432 24677887653 233444443
No 29
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.29 E-value=0.011 Score=45.94 Aligned_cols=99 Identities=20% Similarity=0.139 Sum_probs=59.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
..+.++++++|...+......... ......-..+.+++|+|+......... . ......+....-++|+||+|++
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~-~~~~~~~~~d~il~v~~~~~~~~~~~~----~-~~~~~~~~~~~~ivv~nK~D~~ 117 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREE-LARRVLERADLILFVVDADLRADEEEE----K-LLELLRERGKPVLLVLNKIDLL 117 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHH-HHHHHHHhCCEEEEEEeCCCCCCHHHH----H-HHHHHHhcCCeEEEEEEccccC
Confidence 568899999999886543221000 000012246779999999986543211 0 0112345566779999999998
Q ss_pred ChhHHHHHH---HHHHHhCCCCceeeec
Q 023301 109 TETELGSLT---ERIKHINAMAPVKLAK 133 (284)
Q Consensus 109 ~~~~~~~~~---~~l~~~np~a~i~~~~ 133 (284)
.+....... .......+.++++..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s 145 (163)
T cd00880 118 PEEEEEELLELRLLILLLLLGLPVIAVS 145 (163)
T ss_pred ChhhHHHHHHHHHhhcccccCCceEEEe
Confidence 876665542 2334445667777654
No 30
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.06 E-value=0.02 Score=53.61 Aligned_cols=110 Identities=18% Similarity=0.246 Sum_probs=62.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcc---cccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCT---DELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~---~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
..++.+++|+|+.....+-..+.. ...+...-..+.++.|+|+..-..... ..+.. ...+-..+-+|++||+
T Consensus 220 ~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~----~~i~~-~~~~~~~~~ivv~NK~ 294 (435)
T PRK00093 220 GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQD----LRIAG-LALEAGRALVIVVNKW 294 (435)
T ss_pred CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHH----HHHHH-HHHHcCCcEEEEEECc
Confidence 346899999999876554321110 001111224578999999986432111 01100 1122236779999999
Q ss_pred CCCChhHHHHHHHHHHHhC---CCCceeeecc-CCCChhhhh
Q 023301 106 DLVTETELGSLTERIKHIN---AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 106 D~~~~~~~~~~~~~l~~~n---p~a~i~~~~~-g~v~~~~l~ 143 (284)
|+.+++....+.+.++... +.++++.++. ....+..++
T Consensus 295 Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~ 336 (435)
T PRK00093 295 DLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLL 336 (435)
T ss_pred cCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHH
Confidence 9997777777777777544 3567776653 233444443
No 31
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.65 E-value=0.052 Score=44.11 Aligned_cols=97 Identities=20% Similarity=0.302 Sum_probs=49.9
Q ss_pred CEEEEecCCCCCcHH---H---HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAP---V---IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~---i---~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
+.+++.++|...... . ...+. ...+...-.++.++.|+|+.+-..... ..+.. ...+....=++++||
T Consensus 65 ~~~liDtpG~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~ii~vvd~~~~~~~~~----~~~~~-~~~~~~~pviiv~nK 138 (179)
T TIGR03598 65 GFRLVDLPGYGYAKVSKEEKEKWQKLI-EEYLEKRENLKGVVLLMDIRHPLKELD----LEMLE-WLRERGIPVLIVLTK 138 (179)
T ss_pred cEEEEeCCCCccccCChhHHHHHHHHH-HHHHHhChhhcEEEEEecCCCCCCHHH----HHHHH-HHHHcCCCEEEEEEC
Confidence 468999999865321 0 11110 011222224678999999987322111 01111 122333455788899
Q ss_pred CCCCChhHHHHHHHHHHH----hCCCCceeeec
Q 023301 105 IDLVTETELGSLTERIKH----INAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~~~~~~~~l~~----~np~a~i~~~~ 133 (284)
+|+.++++.+...+.+++ ..+..+++.++
T Consensus 139 ~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~S 171 (179)
T TIGR03598 139 ADKLKKSELNKQLKKIKKALKKDADDPSVQLFS 171 (179)
T ss_pred cccCCHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 999876655444444443 32234566554
No 32
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=95.59 E-value=0.037 Score=51.07 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=56.0
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchHHHHHHHh--------hcCEE
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVNEAVEQVA--------YADRI 100 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~~~~~Qi~--------~Ad~i 100 (284)
..+|+.++|+..+...-..|- ...++..-..+.++.|||+..+. ..+.+. ..+..++. ..-+|
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg-~~~l~~i~radvlL~VVD~s~~~~~d~~e~~------~~l~~eL~~~~~~L~~kP~Il 280 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLG-IRFLKHLERCRVLLHLIDIAPIDGSDPVENA------RIIINELEKYSPKLAEKPRWL 280 (390)
T ss_pred EEEEEeCCCccccccchhhHH-HHHHHHHHhCCEEEEEeccCcccccChHHHH------HHHHHHHHhhhhhhcCCCEEE
Confidence 379999999987653211010 01122334678899999987321 111110 11223332 46799
Q ss_pred EEccCCCCChhHHHHHHHHHHHhCC-CCceeeecc-CCCChhhhh
Q 023301 101 ILNKIDLVTETELGSLTERIKHINA-MAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 101 vlnK~D~~~~~~~~~~~~~l~~~np-~a~i~~~~~-g~v~~~~l~ 143 (284)
|+||+|+.+.+++....+.+++..+ ..+++.++. ....+..++
T Consensus 281 VlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl 325 (390)
T PRK12298 281 VFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELC 325 (390)
T ss_pred EEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHH
Confidence 9999999876665544444443333 235665443 333444443
No 33
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.56 E-value=0.04 Score=45.73 Aligned_cols=79 Identities=23% Similarity=0.450 Sum_probs=46.0
Q ss_pred CCEEEEecCCCCC--cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC---EEEEcc
Q 023301 30 FDHIVIETTGLAK--PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD---RIILNK 104 (284)
Q Consensus 30 ~d~iiIE~sG~a~--p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad---~ivlnK 104 (284)
..+.|++++|..+ +......+.. .+......+.++.|+|+....... +. ... ..+..++...+ +||+||
T Consensus 89 ~~~~i~Dt~G~~~~~~~~~~~~~~~--~~~~~~~~d~ii~v~D~~~~~~~~-~~--~~~-~~~l~~~~~~~~~viiV~NK 162 (204)
T cd01878 89 REVLLTDTVGFIRDLPHQLVEAFRS--TLEEVAEADLLLHVVDASDPDYEE-QI--ETV-EKVLKELGAEDIPMILVLNK 162 (204)
T ss_pred ceEEEeCCCccccCCCHHHHHHHHH--HHHHHhcCCeEEEEEECCCCChhh-HH--HHH-HHHHHHcCcCCCCEEEEEEc
Confidence 3788999999854 3333333321 122234678899999997643211 00 001 12345555445 889999
Q ss_pred CCCCChhHHH
Q 023301 105 IDLVTETELG 114 (284)
Q Consensus 105 ~D~~~~~~~~ 114 (284)
+|+.+.....
T Consensus 163 ~Dl~~~~~~~ 172 (204)
T cd01878 163 IDLLDDEELE 172 (204)
T ss_pred cccCChHHHH
Confidence 9998765543
No 34
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=95.49 E-value=0.03 Score=52.22 Aligned_cols=99 Identities=18% Similarity=0.281 Sum_probs=57.9
Q ss_pred CEEEEecCCCCCcHHHHHHh---cccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETF---CTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l---~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~ 107 (284)
.+.+++|+|+.....+-+.+ .....+...-..+.++.|+|+..-..... ..+.. ...+-..+-+||+||+|+
T Consensus 221 ~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~----~~~~~-~~~~~~~~iiiv~NK~Dl 295 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQD----LRIAG-LILEAGKALVIVVNKWDL 295 (429)
T ss_pred EEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHH----HHHHH-HHHHcCCcEEEEEECccc
Confidence 57899999987655432111 00011112235678999999986332211 00101 112234678999999999
Q ss_pred C-ChhHHHHHHHHHHHhCC---CCceeeecc
Q 023301 108 V-TETELGSLTERIKHINA---MAPVKLAKY 134 (284)
Q Consensus 108 ~-~~~~~~~~~~~l~~~np---~a~i~~~~~ 134 (284)
. +.+..+.+.+.++...+ .++++.++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA 326 (429)
T TIGR03594 296 VKDEKTREEFKKELRRKLPFLDFAPIVFISA 326 (429)
T ss_pred CCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence 8 66667777777776553 467776653
No 35
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.34 E-value=0.025 Score=52.28 Aligned_cols=102 Identities=17% Similarity=0.301 Sum_probs=68.8
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhccc---ccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTD---ELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~---~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
..-.+.+|+|-|+=.-..|.+.+..- ..++..-..+.++.|+||..-....+. .+ .-+..-..-|.+||+||
T Consensus 224 ~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~----~i-a~~i~~~g~~~vIvvNK 298 (444)
T COG1160 224 DGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL----RI-AGLIEEAGRGIVIVVNK 298 (444)
T ss_pred CCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH----HH-HHHHHHcCCCeEEEEEc
Confidence 34567999999999888777654321 122334466778999999884432111 11 12356677899999999
Q ss_pred CCCCCh--hHHHHHHHHHHHhCC---CCceeeecc
Q 023301 105 IDLVTE--TELGSLTERIKHINA---MAPVKLAKY 134 (284)
Q Consensus 105 ~D~~~~--~~~~~~~~~l~~~np---~a~i~~~~~ 134 (284)
+|+++. ...+.+++.++...| .|+++..+.
T Consensus 299 WDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA 333 (444)
T COG1160 299 WDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISA 333 (444)
T ss_pred cccCCchhhHHHHHHHHHHHHhccccCCeEEEEEe
Confidence 999886 667788888887655 477776653
No 36
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.28 E-value=0.044 Score=43.61 Aligned_cols=56 Identities=21% Similarity=0.208 Sum_probs=34.2
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-----hcCEEEEccCCCCChhHHHHHHHHHHHhC
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-----YADRIILNKIDLVTETELGSLTERIKHIN 124 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-----~Ad~ivlnK~D~~~~~~~~~~~~~l~~~n 124 (284)
..|.++.|+|+...... .++ .+.+.+. ..-++|+||+|+.+++++....+.+++..
T Consensus 8 ~aD~il~VvD~~~p~~~----~~~----~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~ 68 (157)
T cd01858 8 SSDVVIQVLDARDPMGT----RCK----HVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEY 68 (157)
T ss_pred hCCEEEEEEECCCCccc----cCH----HHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCC
Confidence 46779999999875321 111 2233332 23489999999988766555555554433
No 37
>COG0218 Predicted GTPase [General function prediction only]
Probab=95.03 E-value=0.081 Score=43.81 Aligned_cols=86 Identities=19% Similarity=0.337 Sum_probs=61.6
Q ss_pred CEEEEecCCCCCc---HHHHHHhc--ccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 31 DHIVIETTGLAKP---APVIETFC--TDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 31 d~iiIE~sG~a~p---~~i~~~l~--~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
...+|.-+|.+.- .+.-+... ....+..+-.|..+|.+||+++.....+. .+ ..+..+...+=+||+||+
T Consensus 71 ~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~----em-~~~l~~~~i~~~vv~tK~ 145 (200)
T COG0218 71 ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR----EM-IEFLLELGIPVIVVLTKA 145 (200)
T ss_pred cEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH----HH-HHHHHHcCCCeEEEEEcc
Confidence 3679999998873 33222211 12466777789999999999998765432 12 245688888899999999
Q ss_pred CCCChhHHHHHHHHHH
Q 023301 106 DLVTETELGSLTERIK 121 (284)
Q Consensus 106 D~~~~~~~~~~~~~l~ 121 (284)
|.++..+..+....++
T Consensus 146 DKi~~~~~~k~l~~v~ 161 (200)
T COG0218 146 DKLKKSERNKQLNKVA 161 (200)
T ss_pred ccCChhHHHHHHHHHH
Confidence 9999877766666666
No 38
>COG2262 HflX GTPases [General function prediction only]
Probab=95.01 E-value=0.11 Score=47.60 Aligned_cols=105 Identities=20% Similarity=0.417 Sum_probs=68.4
Q ss_pred CCCEEEEecCCCCC--cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC---EEEEc
Q 023301 29 QFDHIVIETTGLAK--PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD---RIILN 103 (284)
Q Consensus 29 ~~d~iiIE~sG~a~--p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad---~ivln 103 (284)
....++-+|.|.-. |..++.+|.+ .|.+...-|.++.|||+... ...... .....+..+|...+ ++|+|
T Consensus 239 g~~vlLtDTVGFI~~LP~~LV~AFks--TLEE~~~aDlllhVVDaSdp-~~~~~~---~~v~~vL~el~~~~~p~i~v~N 312 (411)
T COG2262 239 GRKVLLTDTVGFIRDLPHPLVEAFKS--TLEEVKEADLLLHVVDASDP-EILEKL---EAVEDVLAEIGADEIPIILVLN 312 (411)
T ss_pred CceEEEecCccCcccCChHHHHHHHH--HHHHhhcCCEEEEEeecCCh-hHHHHH---HHHHHHHHHcCCCCCCEEEEEe
Confidence 35588889999877 9999999864 67788899999999999886 222221 11233456665444 78899
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhhh
Q 023301 104 KIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFVL 143 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l~ 143 (284)
|+|+++++. ....+....| .+|..+......++.|.
T Consensus 313 KiD~~~~~~---~~~~~~~~~~-~~v~iSA~~~~gl~~L~ 348 (411)
T COG2262 313 KIDLLEDEE---ILAELERGSP-NPVFISAKTGEGLDLLR 348 (411)
T ss_pred cccccCchh---hhhhhhhcCC-CeEEEEeccCcCHHHHH
Confidence 999987665 2333333335 45544444444455544
No 39
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.96 E-value=0.14 Score=41.38 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=46.5
Q ss_pred cCCCCEEEEecCCCCC-cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 27 QGQFDHIVIETTGLAK-PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~-p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
....|+|||++.|... ....+..+. .+.....-+.++.|+|+....+.+.. ...+.++.. .+.+|+||.
T Consensus 80 ~~~~d~viiDt~g~~~~~~~~l~~l~---~l~~~~~~~~~~lVv~~~~~~~~~~~------~~~~~~~~~-~~~viltk~ 149 (173)
T cd03115 80 EENFDVVIVDTAGRLQIDENLMEELK---KIKRVVKPDEVLLVVDAMTGQDAVNQ------AKAFNEALG-ITGVILTKL 149 (173)
T ss_pred hCCCCEEEEECcccchhhHHHHHHHH---HHHhhcCCCeEEEEEECCCChHHHHH------HHHHHhhCC-CCEEEEECC
Confidence 4688999999999874 334444442 22233457789999999654433221 122234444 689999999
Q ss_pred CCCC
Q 023301 106 DLVT 109 (284)
Q Consensus 106 D~~~ 109 (284)
|...
T Consensus 150 D~~~ 153 (173)
T cd03115 150 DGDA 153 (173)
T ss_pred cCCC
Confidence 9865
No 40
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=94.87 E-value=0.035 Score=43.38 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=44.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
....+++++|..+.....+...........-..+.++.|+|+.+...... .......-...-++|+||+|+.+
T Consensus 49 ~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~-------~~~~~~~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 49 IPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEED-------LEILELPADKPIIVVLNKSDLLP 121 (157)
T ss_pred EEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHH-------HHHHHhhcCCCEEEEEEchhcCC
Confidence 45689999998775433221110011112236778999999997332211 01112234566789999999987
Q ss_pred hhHH
Q 023301 110 ETEL 113 (284)
Q Consensus 110 ~~~~ 113 (284)
....
T Consensus 122 ~~~~ 125 (157)
T cd04164 122 DSEL 125 (157)
T ss_pred cccc
Confidence 5543
No 41
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=94.82 E-value=0.059 Score=43.88 Aligned_cols=54 Identities=19% Similarity=0.256 Sum_probs=35.0
Q ss_pred ceEEEEEcccchHHhhhhcCCccchHHHHHH--H---hhcCEEEEccCCCCChhHHHHHHHHHHHhC
Q 023301 63 DGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ--V---AYADRIILNKIDLVTETELGSLTERIKHIN 124 (284)
Q Consensus 63 ~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q--i---~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~n 124 (284)
|.|+.|+|+....... . ..+.+. + .-.-++|+||+|+++++.+..+.+.+++..
T Consensus 1 DvVl~VvDar~p~~~~----~----~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~ 59 (172)
T cd04178 1 DVILEVLDARDPLGCR----C----PQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREF 59 (172)
T ss_pred CEEEEEEECCCCCCCC----C----HHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhC
Confidence 4689999998753221 1 112222 2 245699999999999887776666666554
No 42
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=94.70 E-value=0.1 Score=43.54 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=48.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~~ 108 (284)
..+.|++++|-.+ +... .+...-.++.++.|+|+...... .. ....... .......- +||+||+|+.
T Consensus 83 ~~i~~iDtPG~~~---~~~~-----~~~~~~~~D~~llVvd~~~~~~~-~~--t~~~l~~-~~~~~~~~iiivvNK~Dl~ 150 (203)
T cd01888 83 RHVSFVDCPGHEI---LMAT-----MLSGAAVMDGALLLIAANEPCPQ-PQ--TSEHLAA-LEIMGLKHIIIVQNKIDLV 150 (203)
T ss_pred cEEEEEECCChHH---HHHH-----HHHhhhcCCEEEEEEECCCCCCC-cc--hHHHHHH-HHHcCCCcEEEEEEchhcc
Confidence 4578999999422 2222 12233467889999999862100 00 0000011 12222233 5699999998
Q ss_pred ChhHHHHHHHHHHHhC-----CCCceeeec
Q 023301 109 TETELGSLTERIKHIN-----AMAPVKLAK 133 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~n-----p~a~i~~~~ 133 (284)
+.+++....+.+++.. ...+++.++
T Consensus 151 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~vS 180 (203)
T cd01888 151 KEEQALENYEQIKKFVKGTIAENAPIIPIS 180 (203)
T ss_pred CHHHHHHHHHHHHHHHhccccCCCcEEEEe
Confidence 7665544444444432 245566554
No 43
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=94.68 E-value=0.0066 Score=48.58 Aligned_cols=94 Identities=15% Similarity=0.184 Sum_probs=50.2
Q ss_pred CCCEEEEecCCCCCcHHHH--HHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 29 QFDHIVIETTGLAKPAPVI--ETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~--~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
.-.+.+|.++|+..+.+.- +.+.. ..+. .-..+.+|.|+||.++...+. + -....++...=++++||+|
T Consensus 46 ~~~~~lvDlPG~ysl~~~s~ee~v~~-~~l~-~~~~D~ii~VvDa~~l~r~l~------l-~~ql~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 46 DQQVELVDLPGIYSLSSKSEEERVAR-DYLL-SEKPDLIIVVVDATNLERNLY------L-TLQLLELGIPVVVVLNKMD 116 (156)
T ss_dssp TEEEEEEE----SSSSSSSHHHHHHH-HHHH-HTSSSEEEEEEEGGGHHHHHH------H-HHHHHHTTSSEEEEEETHH
T ss_pred CceEEEEECCCcccCCCCCcHHHHHH-HHHh-hcCCCEEEEECCCCCHHHHHH------H-HHHHHHcCCCEEEEEeCHH
Confidence 4578999999988765321 11111 1111 125788999999999765431 0 1123455677789999999
Q ss_pred CCChhHHHH-HHHHHHHhCCCCceeeec
Q 023301 107 LVTETELGS-LTERIKHINAMAPVKLAK 133 (284)
Q Consensus 107 ~~~~~~~~~-~~~~l~~~np~a~i~~~~ 133 (284)
++....+.- ..+.-+.+ ..+++.++
T Consensus 117 ~a~~~g~~id~~~Ls~~L--g~pvi~~s 142 (156)
T PF02421_consen 117 EAERKGIEIDAEKLSERL--GVPVIPVS 142 (156)
T ss_dssp HHHHTTEEE-HHHHHHHH--TS-EEEEB
T ss_pred HHHHcCCEECHHHHHHHh--CCCEEEEE
Confidence 876543211 22222223 35777665
No 44
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=94.65 E-value=0.13 Score=48.46 Aligned_cols=89 Identities=22% Similarity=0.333 Sum_probs=52.6
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch--HHhhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA--MQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~--~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
.+.||+++|-. .++... +...-..+.++.|||+... ..+..+ .+ .+.+.+.... +|++||+|+
T Consensus 118 ~i~~IDtPGH~---~fi~~m-----~~g~~~~D~alLVVda~~g~~~~qT~e----hl--~i~~~lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 118 HVSFVDCPGHD---ILMATM-----LNGAAVMDAALLLIAANESCPQPQTSE----HL--AAVEIMKLKHIIILQNKIDL 183 (460)
T ss_pred eEeeeeCCCHH---HHHHHH-----HHHHhhCCEEEEEEECCCCccchhhHH----HH--HHHHHcCCCcEEEEEecccc
Confidence 56899999943 333332 2223467889999999862 111111 11 1234444444 579999999
Q ss_pred CChhHHHHHHHHHHHh-----CCCCceeeec
Q 023301 108 VTETELGSLTERIKHI-----NAMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~~~~~~~~l~~~-----np~a~i~~~~ 133 (284)
++.+.+.+..+.++++ ...++++..+
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVS 214 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPIS 214 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEee
Confidence 9876655555555443 2456787765
No 45
>PRK14974 cell division protein FtsY; Provisional
Probab=94.60 E-value=0.34 Score=43.78 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=58.1
Q ss_pred CCCCEEEEecCCCCC-cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAK-PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~-p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
.+.|+|||+|.|... ...++..|.. +.....-+.++.|+|+..-...+.. .....+....|-+|+||.|
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~---i~~~~~pd~~iLVl~a~~g~d~~~~-------a~~f~~~~~~~giIlTKlD 290 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKK---IVRVTKPDLVIFVGDALAGNDAVEQ-------AREFNEAVGIDGVILTKVD 290 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHH---HHHhhCCceEEEeeccccchhHHHH-------HHHHHhcCCCCEEEEeeec
Confidence 568999999999986 5666666532 2233445668899999764322211 0112234457999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeeccCC
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKYGS 136 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~g~ 136 (284)
... ..-.+...+... +.||.....|+
T Consensus 291 ~~~--~~G~~ls~~~~~--~~Pi~~i~~Gq 316 (336)
T PRK14974 291 ADA--KGGAALSIAYVI--GKPILFLGVGQ 316 (336)
T ss_pred CCC--CccHHHHHHHHH--CcCEEEEeCCC
Confidence 854 233444444444 46776666663
No 46
>COG1084 Predicted GTPase [General function prediction only]
Probab=94.57 E-value=0.034 Score=49.32 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=55.1
Q ss_pred CEEEEecCCCCC-cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAK-PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~-p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
.+=+|.|+|+-| |.+=...+.....++-..-=+.|++++|+.....|--+.+ ..+......-+...=++|+||+|.++
T Consensus 216 R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 216 RIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred eEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcCCCeEEEEecccccc
Confidence 456899999998 5433333322122221222345779999987655422111 11223344555545778889999999
Q ss_pred hhHHHHHHHHHHHh
Q 023301 110 ETELGSLTERIKHI 123 (284)
Q Consensus 110 ~~~~~~~~~~l~~~ 123 (284)
.+.++++...+...
T Consensus 295 ~e~~~~~~~~~~~~ 308 (346)
T COG1084 295 EEKLEEIEASVLEE 308 (346)
T ss_pred hhHHHHHHHHHHhh
Confidence 98888888776544
No 47
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.57 E-value=0.084 Score=41.22 Aligned_cols=65 Identities=26% Similarity=0.329 Sum_probs=37.7
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeee
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLA 132 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~ 132 (284)
..+.++.|+|+....... +..+. ....+. ...-++|+||+|+.+++++..+.+.++... .+++..
T Consensus 11 ~aD~vl~ViD~~~p~~~~----~~~l~-~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~--~~ii~i 77 (141)
T cd01857 11 RSDIVVQIVDARNPLLFR----PPDLE-RYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFF 77 (141)
T ss_pred hCCEEEEEEEccCCcccC----CHHHH-HHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC--CeEEEE
Confidence 456789999997643211 11111 112222 334678889999988777666666665444 345544
No 48
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=94.54 E-value=0.3 Score=40.05 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=48.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~ 107 (284)
.....+++++|... +.... +...-..+.++.|+|+......... . .....+. ...=++++||+|+
T Consensus 67 ~~~~~i~DtpG~~~---~~~~~-----~~~~~~~d~vi~VvD~~~~~~~~~~----~--~~~~~~~~~~~~iiv~NK~Dl 132 (192)
T cd01889 67 NLQITLVDCPGHAS---LIRTI-----IGGAQIIDLMLLVVDATKGIQTQTA----E--CLVIGEILCKKLIVVLNKIDL 132 (192)
T ss_pred CceEEEEECCCcHH---HHHHH-----HHHHhhCCEEEEEEECCCCccHHHH----H--HHHHHHHcCCCEEEEEECccc
Confidence 56778999999732 22222 1122346789999999763211000 0 0111222 2334688899999
Q ss_pred CChhHHH----HHHHHHHHh-----CCCCceeeec
Q 023301 108 VTETELG----SLTERIKHI-----NAMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~~~----~~~~~l~~~-----np~a~i~~~~ 133 (284)
.+.++.+ .+++.++.. +...+++.++
T Consensus 133 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iS 167 (192)
T cd01889 133 IPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVS 167 (192)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEe
Confidence 8655543 333333322 3456777665
No 49
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.43 E-value=0.18 Score=39.24 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=43.8
Q ss_pred CCCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~ 107 (284)
+....+++++|..+-.. +...+.. ......-..+.++.|+|+....... ...+ .....+....=++|+||+|+
T Consensus 44 ~~~~~i~DtpG~~~~~~~~~~~~~~-~~~~~~~~~d~ii~v~d~~~~~~~~----~~~~-~~~~~~~~~piiiv~nK~D~ 117 (157)
T cd01894 44 GREFILIDTGGIEPDDEGISKEIRE-QAELAIEEADVILFVVDGREGLTPA----DEEI-AKYLRKSKKPVILVVNKVDN 117 (157)
T ss_pred CeEEEEEECCCCCCchhHHHHHHHH-HHHHHHHhCCEEEEEEeccccCCcc----HHHH-HHHHHhcCCCEEEEEECccc
Confidence 35678999999988654 2221111 0111123467899999997632110 0111 11122334556889999999
Q ss_pred CChhHH
Q 023301 108 VTETEL 113 (284)
Q Consensus 108 ~~~~~~ 113 (284)
.+.+..
T Consensus 118 ~~~~~~ 123 (157)
T cd01894 118 IKEEDE 123 (157)
T ss_pred CChHHH
Confidence 875543
No 50
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=94.36 E-value=0.097 Score=43.48 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=43.7
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
+..+.||+|+|..+. +... ....-..+.++.|||+..-.... .+.... ...+....- ++++||+|+
T Consensus 64 ~~~i~~iDtPG~~~~---~~~~-----~~~~~~~D~~ilVvda~~g~~~~----~~~~~~-~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 64 NRHYAHVDCPGHADY---IKNM-----ITGAAQMDGAILVVSATDGPMPQ----TREHLL-LARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CeEEEEEECcCHHHH---HHHH-----HHHhhhCCEEEEEEECCCCCcHH----HHHHHH-HHHHcCCCcEEEEEeCCCC
Confidence 346799999998542 2221 22234678899999997632110 011111 122333332 467899999
Q ss_pred CChhH-HHHHHHHHHH
Q 023301 108 VTETE-LGSLTERIKH 122 (284)
Q Consensus 108 ~~~~~-~~~~~~~l~~ 122 (284)
++.++ .+.+.+.++.
T Consensus 131 ~~~~~~~~~~~~~i~~ 146 (195)
T cd01884 131 VDDEELLELVEMEVRE 146 (195)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 75443 3334444443
No 51
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=94.35 E-value=0.11 Score=41.32 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=40.2
Q ss_pred CEEEEecCCCCCcH----HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--------hhcC
Q 023301 31 DHIVIETTGLAKPA----PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--------AYAD 98 (284)
Q Consensus 31 d~iiIE~sG~a~p~----~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--------~~Ad 98 (284)
...+++++|+.+-. .+...+ +...-..+.++.|+|+......+.+. ....+++ ...-
T Consensus 49 ~~~l~DtpG~~~~~~~~~~~~~~~-----~~~~~~~d~vi~v~D~~~~~~~~~~~------~~~~~~l~~~~~~~~~~p~ 117 (170)
T cd01898 49 SFVVADIPGLIEGASEGKGLGHRF-----LRHIERTRLLLHVIDLSGDDDPVEDY------KTIRNELELYNPELLEKPR 117 (170)
T ss_pred eEEEEecCcccCcccccCCchHHH-----HHHHHhCCEEEEEEecCCCCCHHHHH------HHHHHHHHHhCcccccccc
Confidence 66799999975321 111111 11122467899999998641111111 1111222 3445
Q ss_pred EEEEccCCCCChhHHHH
Q 023301 99 RIILNKIDLVTETELGS 115 (284)
Q Consensus 99 ~ivlnK~D~~~~~~~~~ 115 (284)
++|+||+|+.+......
T Consensus 118 ivv~NK~Dl~~~~~~~~ 134 (170)
T cd01898 118 IVVLNKIDLLDEEELFE 134 (170)
T ss_pred EEEEEchhcCCchhhHH
Confidence 89999999977655433
No 52
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=94.00 E-value=0.18 Score=45.87 Aligned_cols=79 Identities=20% Similarity=0.412 Sum_probs=47.9
Q ss_pred CCCEEEEecCCC-CC-cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC---EEEEc
Q 023301 29 QFDHIVIETTGL-AK-PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD---RIILN 103 (284)
Q Consensus 29 ~~d~iiIE~sG~-a~-p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad---~ivln 103 (284)
....+|++|.|. .+ |..+++.+.. .+......+.++.|+|+...... .+. ..+ ..+..++...+ ++|+|
T Consensus 236 ~~~i~l~DT~G~~~~l~~~lie~f~~--tle~~~~ADlil~VvD~s~~~~~-~~~--~~~-~~~L~~l~~~~~piIlV~N 309 (351)
T TIGR03156 236 GGEVLLTDTVGFIRDLPHELVAAFRA--TLEEVREADLLLHVVDASDPDRE-EQI--EAV-EKVLEELGAEDIPQLLVYN 309 (351)
T ss_pred CceEEEEecCcccccCCHHHHHHHHH--HHHHHHhCCEEEEEEECCCCchH-HHH--HHH-HHHHHHhccCCCCEEEEEE
Confidence 346789999998 33 7777766532 23334467889999999764321 110 000 12334554333 88999
Q ss_pred cCCCCChhHH
Q 023301 104 KIDLVTETEL 113 (284)
Q Consensus 104 K~D~~~~~~~ 113 (284)
|+|+.+.+++
T Consensus 310 K~Dl~~~~~v 319 (351)
T TIGR03156 310 KIDLLDEPRI 319 (351)
T ss_pred eecCCChHhH
Confidence 9999875443
No 53
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=93.94 E-value=0.15 Score=42.58 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=46.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHH-HHH---hhcCEEEEccC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAV-EQV---AYADRIILNKI 105 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~-~Qi---~~Ad~ivlnK~ 105 (284)
..+.|++++|-......... .+... ++++|+|+|+......+.... .++...+. .+. ...=+|+.||+
T Consensus 48 ~~~~l~D~pG~~~~~~~~~~-----~~~~~--~~~vV~VvD~~~~~~~~~~~~-~~l~~il~~~~~~~~~~pvliv~NK~ 119 (203)
T cd04105 48 KKFRLVDVPGHPKLRDKLLE-----TLKNS--AKGIVFVVDSATFQKNLKDVA-EFLYDILTDLEKVKNKIPVLIACNKQ 119 (203)
T ss_pred ceEEEEECCCCHHHHHHHHH-----HHhcc--CCEEEEEEECccchhHHHHHH-HHHHHHHHHHhhccCCCCEEEEecch
Confidence 45678899997654432221 22222 689999999998743333210 11111111 222 23446777999
Q ss_pred CCCChhHHHHHHHHHH
Q 023301 106 DLVTETELGSLTERIK 121 (284)
Q Consensus 106 D~~~~~~~~~~~~~l~ 121 (284)
|+.+....+.+++.+.
T Consensus 120 Dl~~a~~~~~i~~~le 135 (203)
T cd04105 120 DLFTAKPAKKIKEQLE 135 (203)
T ss_pred hhcccCCHHHHHHHHH
Confidence 9976555555555554
No 54
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=93.82 E-value=0.16 Score=40.52 Aligned_cols=102 Identities=21% Similarity=0.179 Sum_probs=51.1
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH-----HhhhhcCCccchHHHHH-H--------H
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM-----QHLNEVKPRFVVNEAVE-Q--------V 94 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~-----~~l~~~~~~~~~~~~~~-Q--------i 94 (284)
.....+++++|..+-....+.+.. ..+...-..+.++.|+|+.... ....+.. .....+.. + .
T Consensus 43 ~~~~~i~DtpG~~~~~~~~~~~~~-~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 119 (176)
T cd01881 43 GARIQVADIPGLIEGASEGRGLGN-QFLAHIRRADAILHVVDASEDDDIGGVDPLEDYE--ILNAELKLYDLETILGLLT 119 (176)
T ss_pred CCeEEEEeccccchhhhcCCCccH-HHHHHHhccCEEEEEEeccCCccccccCHHHHHH--HHHHHHHHhhhhhHHHHHh
Confidence 455688999998532111111100 0011122467899999998752 1111110 00011111 1 3
Q ss_pred hhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 95 AYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 95 ~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
...-++|+||+|+.+..................+++.++
T Consensus 120 ~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 120 AKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred hCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 567899999999987766554422222333445565554
No 55
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=93.79 E-value=0.31 Score=41.38 Aligned_cols=95 Identities=18% Similarity=0.178 Sum_probs=51.5
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEE-EEccCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRI-ILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~i-vlnK~D~~ 108 (284)
-.+.+++|+|-. ..+++.+ -..+.++.|+|+....... +..+...+.. .....+| |+||+|+.
T Consensus 83 ~~i~~vDtPg~~--~~~l~~a---------k~aDvVllviDa~~~~~~~----~~~i~~~l~~-~g~p~vi~VvnK~D~~ 146 (225)
T cd01882 83 RRLTFIECPNDI--NAMIDIA---------KVADLVLLLIDASFGFEME----TFEFLNILQV-HGFPRVMGVLTHLDLF 146 (225)
T ss_pred ceEEEEeCCchH--HHHHHHH---------HhcCEEEEEEecCcCCCHH----HHHHHHHHHH-cCCCeEEEEEeccccC
Confidence 345788888732 3333321 2457789999997532110 0111111112 2334555 99999997
Q ss_pred Ch-hHHHHHHHHHHH-----hCCCCceeeec---cCCCChh
Q 023301 109 TE-TELGSLTERIKH-----INAMAPVKLAK---YGSVDMD 140 (284)
Q Consensus 109 ~~-~~~~~~~~~l~~-----~np~a~i~~~~---~g~v~~~ 140 (284)
++ +.++.+.+.++. +.+.++|+..+ .+.++..
T Consensus 147 ~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~~~~ 187 (225)
T cd01882 147 KKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRYPKT 187 (225)
T ss_pred CcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCCCHH
Confidence 43 335555544433 55788888776 4444443
No 56
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=93.78 E-value=0.21 Score=45.07 Aligned_cols=92 Identities=21% Similarity=0.308 Sum_probs=51.2
Q ss_pred CCEEEEecCCCCCcHH----HHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchHHHHHHH--------h
Q 023301 30 FDHIVIETTGLAKPAP----VIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVNEAVEQV--------A 95 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~----i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~~~~~Qi--------~ 95 (284)
..+.|++++|+-+... +-..+ ++..-..+.++.|+|+.... ..+.+. ..+..++ .
T Consensus 205 ~~~~i~D~PGli~~a~~~~gLg~~f-----lrhierad~ll~VvD~s~~~~~~~~e~l------~~l~~EL~~~~~~l~~ 273 (329)
T TIGR02729 205 RSFVIADIPGLIEGASEGAGLGHRF-----LKHIERTRVLLHLIDISPLDGRDPIEDY------EIIRNELKKYSPELAE 273 (329)
T ss_pred eEEEEEeCCCcccCCcccccHHHHH-----HHHHHhhCEEEEEEcCccccccCHHHHH------HHHHHHHHHhhhhhcc
Confidence 4578889999854321 11111 22223567899999998641 111111 1122222 3
Q ss_pred hcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 96 YADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 96 ~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
..-+||+||+|+.+.+..+.+.+.+.+... .+++.++
T Consensus 274 kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~-~~vi~iS 310 (329)
T TIGR02729 274 KPRIVVLNKIDLLDEEELAELLKELKKALG-KPVFPIS 310 (329)
T ss_pred CCEEEEEeCccCCChHHHHHHHHHHHHHcC-CcEEEEE
Confidence 456899999999877666655555543332 4566554
No 57
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=93.78 E-value=0.14 Score=40.80 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=55.0
Q ss_pred EEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhH
Q 023301 34 VIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETE 112 (284)
Q Consensus 34 iIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~ 112 (284)
+|.++|.....+ ....+. ...-..+.++.|+|+......+. .. .........-++++||+|+.+ ..
T Consensus 41 ~iDtpG~~~~~~~~~~~~~-----~~~~~ad~il~v~d~~~~~s~~~----~~---~~~~~~~~~ii~v~nK~Dl~~-~~ 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALI-----TTLQDVDMLIYVHGANDPESRLP----AG---LLDIGVSKRQIAVISKTDMPD-AD 107 (158)
T ss_pred cccCCccccCCHHHHHHHH-----HHHhcCCEEEEEEeCCCcccccC----HH---HHhccCCCCeEEEEEccccCc-cc
Confidence 578888744332 222211 11236688999999986532211 11 111111234689999999865 34
Q ss_pred HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 113 LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 113 ~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+.+.+++++.....+++.++. ..-..+.++
T Consensus 108 ~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 108 VAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred HHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 5667777777765568877653 344555555
No 58
>PRK01889 GTPase RsgA; Reviewed
Probab=93.76 E-value=0.081 Score=48.27 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=39.8
Q ss_pred eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeecc
Q 023301 60 VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 60 ~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~ 134 (284)
-.+|.++.|+++..-.+. ..-++++. +......--+||+||+|++++. +...+.++.+++..+|+.++.
T Consensus 111 ANvD~vliV~s~~p~~~~--~~ldr~L~--~a~~~~i~piIVLNK~DL~~~~--~~~~~~~~~~~~g~~Vi~vSa 179 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNL--RRIERYLA--LAWESGAEPVIVLTKADLCEDA--EEKIAEVEALAPGVPVLAVSA 179 (356)
T ss_pred EeCCEEEEEEecCCCCCh--hHHHHHHH--HHHHcCCCEEEEEEChhcCCCH--HHHHHHHHHhCCCCcEEEEEC
Confidence 578889999988531110 00112221 1233333458999999998752 233455666677788886553
No 59
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=93.61 E-value=0.51 Score=36.93 Aligned_cols=97 Identities=20% Similarity=0.316 Sum_probs=51.2
Q ss_pred CEEEEecCCCCCc------HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 31 DHIVIETTGLAKP------APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p------~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
...+++++|++.. ..-...+. ...+...-.++.++.|+|.......... .+ ...........++++||
T Consensus 46 ~~~~~D~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~~~~~----~~-~~~l~~~~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVSKEVKEKWGKLI-EEYLENRENLKGVVLLIDSRHGPTEIDL----EM-LDWLEELGIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccCHHHHHHHHHHH-HHHHHhChhhhEEEEEEEcCcCCCHhHH----HH-HHHHHHcCCCEEEEEEc
Confidence 5678999998773 11111111 1112222346678889998754211100 01 11223334455889999
Q ss_pred CCCCChhHHHHHHHHHHH----hCCCCceeeec
Q 023301 105 IDLVTETELGSLTERIKH----INAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~~~~~~~~l~~----~np~a~i~~~~ 133 (284)
+|+.++++.......++. ..+..+++.++
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 999877766555444442 23445666544
No 60
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=93.47 E-value=0.21 Score=39.09 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=48.7
Q ss_pred CCEEEEecCCCCCcHHH--HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPV--IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i--~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~ 107 (284)
.+..+++|+|..+.... -..+.. ..+.. -..+.++.|+|+........ .... ..+....=++|+||+|+
T Consensus 43 ~~~~liDtpG~~~~~~~~~~~~~~~-~~~~~-~~~d~vi~v~d~~~~~~~~~------~~~~-~~~~~~~~iiv~NK~Dl 113 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYSEDEKVAR-DFLLG-EKPDLIVNVVDATNLERNLY------LTLQ-LLELGLPVVVALNMIDE 113 (158)
T ss_pred eEEEEEECCCccccCCCChhHHHHH-HHhcC-CCCcEEEEEeeCCcchhHHH------HHHH-HHHcCCCEEEEEehhhh
Confidence 46789999998764321 000100 01111 25778999999987432211 0011 12234556889999999
Q ss_pred CChhHHHH-HHHHHHHhCCCCceeeec
Q 023301 108 VTETELGS-LTERIKHINAMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~~~~-~~~~l~~~np~a~i~~~~ 133 (284)
.+.+.+.. ..+..+.++ .+++.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~--~~~~~iS 138 (158)
T cd01879 114 AEKRGIKIDLDKLSELLG--VPVVPTS 138 (158)
T ss_pred cccccchhhHHHHHHhhC--CCeEEEE
Confidence 76544332 222223333 4566544
No 61
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=93.25 E-value=0.52 Score=36.17 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=50.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~ 107 (284)
....+++++|..+...+...... ....-.+..+.++.|+|+........ ..+..+. ...-++++||+|+
T Consensus 50 ~~~~~~D~~G~~~~~~~~~~~~~-~~~~~i~~~d~~~~v~~~~~~~~~~~--------~~~~~~~~~~~p~ivv~nK~D~ 120 (161)
T TIGR00231 50 YKFNLLDTAGQEDYRAIRRLYYR-AVESSLRVFDIVILVLDVEEILEKQT--------KEIIHHAESNVPIILVGNKIDL 120 (161)
T ss_pred EEEEEEECCCcccchHHHHHHHh-hhhEEEEEEEEeeeehhhhhHhHHHH--------HHHHHhcccCCcEEEEEEcccC
Confidence 45678899997666554433221 11222345555566666655442111 1111111 4567899999999
Q ss_pred CChhHHHHHHHHHHHhCCCCceeeec
Q 023301 108 VTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
..........+.++.++. .+++.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~~~~~~s 145 (161)
T TIGR00231 121 RDAKLKTHVAFLFAKLNG-EPIIPLS 145 (161)
T ss_pred CcchhhHHHHHHHhhccC-CceEEee
Confidence 875545555555555443 3455544
No 62
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=93.23 E-value=0.28 Score=38.88 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=35.2
Q ss_pred ceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 63 DGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 63 ~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
|.++.|+|+....... ...+.......-.-.-++|+||+|+++.+++......+++..+ ..++..+
T Consensus 1 Dvvl~VvD~~~p~~~~----~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~-~~ii~vS 66 (155)
T cd01849 1 DVILEVLDARDPLGTR----SPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYP-TIPFKIS 66 (155)
T ss_pred CEEEEEEeccCCcccc----CHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCC-ceEEEEe
Confidence 3578999997653221 1111100111223356888999999887665544444444433 4555443
No 63
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=93.04 E-value=0.27 Score=40.24 Aligned_cols=79 Identities=27% Similarity=0.324 Sum_probs=44.4
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
.....+|.++|-.+... ... ......+.+|.|||+......... .. -....+....=+|++||+|+.
T Consensus 69 ~~~i~~iDtPG~~~f~~--~~~------~~~~~~D~ailvVda~~g~~~~~~----~~-l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 69 NRKITLIDTPGHEDFIK--EMI------RGLRQADIAILVVDANDGIQPQTE----EH-LKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp SEEEEEEEESSSHHHHH--HHH------HHHTTSSEEEEEEETTTBSTHHHH----HH-HHHHHHTT-SEEEEEETCTSS
T ss_pred ccceeecccccccceee--ccc------ceecccccceeeeecccccccccc----cc-cccccccccceEEeeeeccch
Confidence 44678899999654221 111 112356789999999864321110 00 112344455578999999998
Q ss_pred ChhHHHHHHHHHH
Q 023301 109 TETELGSLTERIK 121 (284)
Q Consensus 109 ~~~~~~~~~~~l~ 121 (284)
..++.++.+.++
T Consensus 136 -~~~~~~~~~~~~ 147 (188)
T PF00009_consen 136 -EKELEEIIEEIK 147 (188)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHH
Confidence 545555544444
No 64
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=93.03 E-value=0.46 Score=46.59 Aligned_cols=89 Identities=16% Similarity=0.234 Sum_probs=50.4
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCCCCh
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDLVTE 110 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~~~~ 110 (284)
+-||.++|-.. .+... +...-.++.++.|||+..-.+. .. +... .+...+.... +||+||+|++++
T Consensus 53 i~~IDtPGhe~---fi~~m-----~~g~~~~D~~lLVVda~eg~~~--qT--~ehl-~il~~lgi~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 53 LGFIDVPGHEK---FLSNM-----LAGVGGIDHALLVVACDDGVMA--QT--REHL-AILQLTGNPMLTVALTKADRVDE 119 (614)
T ss_pred EEEEECCCHHH---HHHHH-----HHHhhcCCEEEEEEECCCCCcH--HH--HHHH-HHHHHcCCCeEEEEEECCccCCH
Confidence 35889999633 22221 1223457889999999763211 00 0010 1123333344 589999999987
Q ss_pred hHHHHHHHHHHHh----C-CCCceeeec
Q 023301 111 TELGSLTERIKHI----N-AMAPVKLAK 133 (284)
Q Consensus 111 ~~~~~~~~~l~~~----n-p~a~i~~~~ 133 (284)
+.++.+.+.+++. + ..++++.+|
T Consensus 120 ~~~~~v~~ei~~~l~~~~~~~~~ii~VS 147 (614)
T PRK10512 120 ARIAEVRRQVKAVLREYGFAEAKLFVTA 147 (614)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 7766655555543 2 246777665
No 65
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=93.00 E-value=0.69 Score=36.24 Aligned_cols=90 Identities=22% Similarity=0.231 Sum_probs=45.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH-HhhhhcCCccchHHHHHHHhh-cCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM-QHLNEVKPRFVVNEAVEQVAY-ADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~-~~l~~~~~~~~~~~~~~Qi~~-Ad~ivlnK~D~ 107 (284)
....+++|+|.-... ... .......+.++.|+|+..-. ....+ .. ....+... .=++++||+|+
T Consensus 51 ~~~~~~DtpG~~~~~---~~~-----~~~~~~ad~ii~V~d~~~~~~~~~~~-----~~-~~~~~~~~~~~ilv~NK~Dl 116 (164)
T cd04171 51 KRLGFIDVPGHEKFI---KNM-----LAGAGGIDLVLLVVAADEGIMPQTRE-----HL-EILELLGIKRGLVVLTKADL 116 (164)
T ss_pred cEEEEEECCChHHHH---HHH-----HhhhhcCCEEEEEEECCCCccHhHHH-----HH-HHHHHhCCCcEEEEEECccc
Confidence 345678899864321 111 11123577899999997511 11000 00 11233333 34688899999
Q ss_pred CChhHHH----HHHHHHHHhC-CCCceeeec
Q 023301 108 VTETELG----SLTERIKHIN-AMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~~~----~~~~~l~~~n-p~a~i~~~~ 133 (284)
.+.+.+. ++.+.++... ...+++.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (164)
T cd04171 117 VDEDWLELVEEEIRELLAGTFLADAPIFPVS 147 (164)
T ss_pred cCHHHHHHHHHHHHHHHHhcCcCCCcEEEEe
Confidence 8764333 3334443321 235666554
No 66
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.93 E-value=1.2 Score=39.13 Aligned_cols=100 Identities=18% Similarity=0.310 Sum_probs=57.3
Q ss_pred CCCCEEEEecCCCCCcHH-HHHHhccccccccee------eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEE
Q 023301 28 GQFDHIVIETTGLAKPAP-VIETFCTDELVSQYV------KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRI 100 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~------~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~i 100 (284)
.++|+|||+|.|...... +++.|.. +.... .-+.++.|+|+..-.+.+... ....+....+-+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~---~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~-------~~f~~~~~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKK---IKRVIKKVDKDAPDEVLLVLDATTGQNALEQA-------KVFNEAVGLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHH---HHHHHhcccCCCCceEEEEEECCCCHHHHHHH-------HHHHhhCCCCEE
Confidence 679999999999986432 2222211 11111 256789999997643332210 111223357899
Q ss_pred EEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhh
Q 023301 101 ILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFV 142 (284)
Q Consensus 101 vlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l 142 (284)
|+||.|.... .-.+....... ..||...+.|+- ++.|
T Consensus 223 IlTKlDe~~~--~G~~l~~~~~~--~~Pi~~~~~Gq~-~~dl 259 (272)
T TIGR00064 223 ILTKLDGTAK--GGIILSIAYEL--KLPIKFIGVGEK-IDDL 259 (272)
T ss_pred EEEccCCCCC--ccHHHHHHHHH--CcCEEEEeCCCC-hHhC
Confidence 9999998542 33444444444 367777667654 3443
No 67
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.88 E-value=1.1 Score=40.22 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=56.8
Q ss_pred cCCCCEEEEecCCCCCcH-HHHHHhccccc-ccc--eeeeceEEEEEcccchHHhhhhcCCccchHHHHH--HHhhcCEE
Q 023301 27 QGQFDHIVIETTGLAKPA-PVIETFCTDEL-VSQ--YVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE--QVAYADRI 100 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~-~i~~~l~~~~~-l~~--~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~--Qi~~Ad~i 100 (284)
..++|+|||+|.|..... ..++.|..-.. ... ...-..++.|+|+..-...+.. +.. +....+-+
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~---------a~~f~~~~~~~gi 264 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ---------AKAFHEAVGLTGI 264 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHH---------HHHHHhhCCCCEE
Confidence 467999999999997633 22222211000 000 1123458999999874433221 122 23357789
Q ss_pred EEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCC
Q 023301 101 ILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSV 137 (284)
Q Consensus 101 vlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v 137 (284)
|+||.|... ..-.+...+... ..||.....|+-
T Consensus 265 IlTKlD~t~--~~G~~l~~~~~~--~~Pi~~v~~Gq~ 297 (318)
T PRK10416 265 ILTKLDGTA--KGGVVFAIADEL--GIPIKFIGVGEG 297 (318)
T ss_pred EEECCCCCC--CccHHHHHHHHH--CCCEEEEeCCCC
Confidence 999999754 344555555555 577777777753
No 68
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=92.85 E-value=0.51 Score=37.35 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=45.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D 106 (284)
....+++++|...-..+..... -..+.+|.|+|+..... +.... ..+ ..+..+ -...=+|++||+|
T Consensus 50 ~~~~l~Dt~G~~~~~~~~~~~~--------~~~~~~v~vvd~~~~~~-~~~~~-~~~-~~~~~~~~~~~~p~ilv~NK~D 118 (167)
T cd04160 50 ARLKFWDLGGQESLRSLWDKYY--------AECHAIIYVIDSTDRER-FEESK-SAL-EKVLRNEALEGVPLLILANKQD 118 (167)
T ss_pred EEEEEEECCCChhhHHHHHHHh--------CCCCEEEEEEECchHHH-HHHHH-HHH-HHHHhChhhcCCCEEEEEEccc
Confidence 5567889999876544333221 13467999999977432 11110 011 111111 1245588889999
Q ss_pred CCChhHHHHHHHHHHH
Q 023301 107 LVTETELGSLTERIKH 122 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~ 122 (284)
+.+......+.+.++.
T Consensus 119 ~~~~~~~~~~~~~~~~ 134 (167)
T cd04160 119 LPDALSVEEIKEVFQD 134 (167)
T ss_pred cccCCCHHHHHHHhcc
Confidence 8665444555555443
No 69
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=92.76 E-value=0.17 Score=50.93 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=51.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccce----eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQY----VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~----~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
..+..+++++|..+..........++..... -..+.++.|+|+.+....+. .. ....+....-++++||
T Consensus 49 ~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l~------l~-~ql~e~giPvIvVlNK 121 (772)
T PRK09554 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY------LT-LQLLELGIPCIVALNM 121 (772)
T ss_pred ceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhHH------HH-HHHHHcCCCEEEEEEc
Confidence 3467899999998754321100000111111 15688999999998654321 10 1123345677999999
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+........-.+.+++.. ..+++.++
T Consensus 122 ~Dl~~~~~i~id~~~L~~~L-G~pVvpiS 149 (772)
T PRK09554 122 LDIAEKQNIRIDIDALSARL-GCPVIPLV 149 (772)
T ss_pred hhhhhccCcHHHHHHHHHHh-CCCEEEEE
Confidence 99875433322223333322 24666554
No 70
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=92.73 E-value=0.61 Score=39.61 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=48.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
..-+-+|.++|..+... .++. .+.. ...+.++.|||+..-..... +... .+..+....=+||+||+|++
T Consensus 83 ~~~i~liDtpG~~~~~~--~~~~---~~~~-~~~D~~llVvda~~g~~~~d----~~~l-~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 83 SKLVTFIDLAGHERYLK--TTLF---GLTG-YAPDYAMLVVAANAGIIGMT----KEHL-GLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred CcEEEEEECCCcHHHHH--HHHH---hhcc-cCCCEEEEEEECCCCCcHHH----HHHH-HHHHHcCCCEEEEEECcccc
Confidence 45678899999754322 1111 1111 24567899999876332111 1111 11233334458999999999
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
+.+++....+.+++.
T Consensus 152 ~~~~~~~~~~~l~~~ 166 (224)
T cd04165 152 PANILQETLKDLKRI 166 (224)
T ss_pred CHHHHHHHHHHHHHH
Confidence 887777777766654
No 71
>KOG2484 consensus GTPase [General function prediction only]
Probab=92.51 E-value=0.28 Score=44.74 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=47.0
Q ss_pred eceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc-----CEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 62 LDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA-----DRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 62 l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A-----d~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
-|.|+-|+||+-.... + ...+.+|+..| =++||||+|+++.+.++....+++.-.|.......+
T Consensus 147 sDVVleVlDARDPlgt------R--~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast 215 (435)
T KOG2484|consen 147 SDVVLEVLDARDPLGT------R--CPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKAST 215 (435)
T ss_pred hheEEEeeeccCCCCC------C--ChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccc
Confidence 4567899999886542 1 13456666433 267889999999999999999999998876664433
No 72
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=92.51 E-value=0.36 Score=43.67 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=51.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH---H-HhhcCEEEEccC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE---Q-VAYADRIILNKI 105 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~---Q-i~~Ad~ivlnK~ 105 (284)
...++++++|+-+-..--..|.. ..++..-..+.++.|+|+.... .+.+. ..+..++.. . ....-+||+||+
T Consensus 206 ~~~~i~D~PGli~ga~~~~gLg~-~flrhie~a~vlI~ViD~s~~~-s~e~~--~~~~~EL~~~~~~L~~kp~IIV~NKi 281 (335)
T PRK12299 206 KSFVIADIPGLIEGASEGAGLGH-RFLKHIERTRLLLHLVDIEAVD-PVEDY--KTIRNELEKYSPELADKPRILVLNKI 281 (335)
T ss_pred cEEEEEeCCCccCCCCccccHHH-HHHHHhhhcCEEEEEEcCCCCC-CHHHH--HHHHHHHHHhhhhcccCCeEEEEECc
Confidence 35789999998653221001100 1122222456799999998532 11111 001111111 1 234678999999
Q ss_pred CCCChhHHH--HHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 106 DLVTETELG--SLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 106 D~~~~~~~~--~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+.+.++.. ......+.. ..+++.++. ....++.++
T Consensus 282 DL~~~~~~~~~~~~~~~~~~--~~~i~~iSAktg~GI~eL~ 320 (335)
T PRK12299 282 DLLDEEEEREKRAALELAAL--GGPVFLISAVTGEGLDELL 320 (335)
T ss_pred ccCCchhHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHH
Confidence 997654432 122222222 256666553 233444444
No 73
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=92.27 E-value=0.8 Score=37.33 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=49.3
Q ss_pred CCEEEEecCCCCCc---HHHH---HHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEc
Q 023301 30 FDHIVIETTGLAKP---APVI---ETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p---~~i~---~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivln 103 (284)
.+..|+.++|.... .... ..+. ...+...-.++.++.|+|+..-..... ..+ ..........-++++|
T Consensus 70 ~~l~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~~~~----~~i-~~~l~~~~~~~iiv~n 143 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVSKEEKEKWQKLI-EEYLRTRENLKGVVLLIDSRHPLKELD----LQM-IEWLKEYGIPVLIVLT 143 (196)
T ss_pred CeEEEeCCCCCCCcCCCchHHHHHHHHH-HHHHHhCccceEEEEEEecCCCCCHHH----HHH-HHHHHHcCCcEEEEEE
Confidence 35678999997532 1111 1111 112222234566788888765221110 001 1112223333478899
Q ss_pred cCCCCChhHHHHHHHHHHHhC-C-CCceeeec
Q 023301 104 KIDLVTETELGSLTERIKHIN-A-MAPVKLAK 133 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~n-p-~a~i~~~~ 133 (284)
|+|+.+..+.+.+.+.++... . ..+++.++
T Consensus 144 K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~S 175 (196)
T PRK00454 144 KADKLKKGERKKQLKKVRKALKFGDDEVILFS 175 (196)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 999988777666555554432 2 35666554
No 74
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=92.25 E-value=0.89 Score=37.31 Aligned_cols=67 Identities=25% Similarity=0.375 Sum_probs=39.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
....+++++|..+......... -..+.++.|+|+..-... . ...+... ..+....-+|++||+|+..
T Consensus 65 ~~~~l~DtpG~~~~~~~~~~~~--------~~~d~~ilV~d~~~~~~~--~--~~~~~~~-~~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 65 TKINIVDTPGHADFGGEVERVL--------SMVDGVLLLVDASEGPMP--Q--TRFVLKK-ALELGLKPIVVINKIDRPD 131 (194)
T ss_pred EEEEEEECCCcHHHHHHHHHHH--------HhcCEEEEEEECCCCccH--H--HHHHHHH-HHHcCCCEEEEEECCCCCC
Confidence 4557899999877554333221 245788999999762110 0 0011011 1233456789999999964
No 75
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=92.21 E-value=0.26 Score=37.38 Aligned_cols=96 Identities=18% Similarity=0.156 Sum_probs=54.0
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCcc--chHHHHHHHhhcCEEEEccCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRF--VVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~--~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
..+..+++++|........... .-..+.++.|+|+....... ... .. ........-...-++++||+|
T Consensus 44 ~~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ivv~nk~D 113 (157)
T cd00882 44 KVKLQIWDTAGQERFRSLRRLY--------YRGADGIILVYDVTDRESFE-NVK-EWLLLILINKEGENIPIILVGNKID 113 (157)
T ss_pred EEEEEEEecCChHHHHhHHHHH--------hcCCCEEEEEEECcCHHHHH-HHH-HHHHHHHHhhccCCCcEEEEEeccc
Confidence 5567899999987755432211 12456789999998855321 110 00 000112333455688889999
Q ss_pred CCChhHHHHHH-HHHHHhCCCCceeeecc
Q 023301 107 LVTETELGSLT-ERIKHINAMAPVKLAKY 134 (284)
Q Consensus 107 ~~~~~~~~~~~-~~l~~~np~a~i~~~~~ 134 (284)
+.+........ ..........+++.++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 142 (157)
T cd00882 114 LPEERVVSEEELAEQLAKELGVPYFETSA 142 (157)
T ss_pred cccccchHHHHHHHHHHhhcCCcEEEEec
Confidence 98765544432 22233345677776653
No 76
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=92.13 E-value=0.31 Score=43.02 Aligned_cols=115 Identities=22% Similarity=0.225 Sum_probs=55.7
Q ss_pred CceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhc-ccccccc----------eeeeceEEEEEccc
Q 023301 4 NGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFC-TDELVSQ----------YVKLDGVITLVDSK 72 (284)
Q Consensus 4 ~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~-~~~~l~~----------~~~l~~vv~vvD~~ 72 (284)
+|=+-|.+++.|... ....---|+|.+|..+ .+. .++..+. ....+.+ .-.++.++.|+|+.
T Consensus 17 ~~~~~~~~~g~~~~~-----~~~~~vGD~V~~~~~~-~~~-~~i~~i~~R~~~l~R~~~~~~~~~i~anvD~vllV~d~~ 89 (287)
T cd01854 17 GGELRCRARGKLRKK-----GIKPVVGDWVEVEPDD-DGE-GVIVRVLPRKNLLSRPAAGGREQVIAANVDQLVIVVSLN 89 (287)
T ss_pred CeEEEEEeccccccC-----CCCccCCCEEEEEecC-CCc-EEEEEEECCCceEEccCCCCcceeEEEeCCEEEEEEEcC
Confidence 344567777766421 1001234999998754 111 1121111 1111111 34788899999997
Q ss_pred chHHhhhhcCCccchHHHHHHHhhcC---EEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 73 HAMQHLNEVKPRFVVNEAVEQVAYAD---RIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 73 ~~~~~l~~~~~~~~~~~~~~Qi~~Ad---~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
...-.... + +.....+..++ +||+||+|+.++.+........ .+...+++.++
T Consensus 90 ~p~~s~~~-----l-dr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~--~~~g~~v~~vS 145 (287)
T cd01854 90 EPFFNPRL-----L-DRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEA--LALGYPVLAVS 145 (287)
T ss_pred CCCCCHHH-----H-HHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHH--HhCCCeEEEEE
Confidence 64300000 0 11122233333 8899999998764322222222 23446766554
No 77
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=92.08 E-value=0.63 Score=36.65 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=38.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-----hcCEEEEcc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-----YADRIILNK 104 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-----~Ad~ivlnK 104 (284)
.+..+.+++|.-....+.... + -..+.++.|+|..+.... .+. ..+..++. ..-++|.||
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~p~ilv~nK 116 (164)
T cd04101 52 VELFIFDSAGQELYSDMVSNY-----W---ESPSVFILVYDVSNKASF-ENC------SRWVNKVRTASKHMPGVLVGNK 116 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHH-----h---CCCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhCCCCCEEEEEEC
Confidence 455677888864443332221 1 245789999999875432 111 11223332 345888899
Q ss_pred CCCCChhH
Q 023301 105 IDLVTETE 112 (284)
Q Consensus 105 ~D~~~~~~ 112 (284)
+|+.+..+
T Consensus 117 ~Dl~~~~~ 124 (164)
T cd04101 117 MDLADKAE 124 (164)
T ss_pred cccccccC
Confidence 99976543
No 78
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=91.99 E-value=0.27 Score=41.46 Aligned_cols=84 Identities=12% Similarity=0.223 Sum_probs=42.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHH--hhhhcCCccchH-HHHHHHhhcC-EEEEcc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQ--HLNEVKPRFVVN-EAVEQVAYAD-RIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~--~l~~~~~~~~~~-~~~~Qi~~Ad-~ivlnK 104 (284)
.+...+++++|..+.. ... ....-..+.+|.|||+..... .+.. ....... .....+...- +|++||
T Consensus 76 ~~~i~liDtpG~~~~~---~~~-----~~~~~~~d~~i~VvDa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiivvNK 146 (219)
T cd01883 76 KYRFTILDAPGHRDFV---PNM-----ITGASQADVAVLVVDARKGEFEAGFEK-GGQTREHALLARTLGVKQLIVAVNK 146 (219)
T ss_pred CeEEEEEECCChHHHH---HHH-----HHHhhhCCEEEEEEECCCCcccccccc-ccchHHHHHHHHHcCCCeEEEEEEc
Confidence 5677899999964321 111 112235678999999986310 0000 0000000 1122223233 459999
Q ss_pred CCCCC----hhHHHHHHHHHH
Q 023301 105 IDLVT----ETELGSLTERIK 121 (284)
Q Consensus 105 ~D~~~----~~~~~~~~~~l~ 121 (284)
+|+.. ++..+.+.+.++
T Consensus 147 ~Dl~~~~~~~~~~~~i~~~l~ 167 (219)
T cd01883 147 MDDVTVNWSEERYDEIKKELS 167 (219)
T ss_pred cccccccccHHHHHHHHHHHH
Confidence 99973 344455555443
No 79
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=91.99 E-value=0.61 Score=38.94 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=36.8
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEE-EEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRI-ILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~i-vlnK~D~ 107 (284)
+..+.|+.|+|..+.. ... ....-..+.++.|+|+..-.... .... ..+..+.....+| |+||+|+
T Consensus 76 ~~~~~liDTpG~~~~~---~~~-----~~~~~~ad~~llVvD~~~~~~~~----~~~~-~~~~~~~~~~~iIvviNK~D~ 142 (208)
T cd04166 76 KRKFIIADTPGHEQYT---RNM-----VTGASTADLAILLVDARKGVLEQ----TRRH-SYILSLLGIRHVVVAVNKMDL 142 (208)
T ss_pred CceEEEEECCcHHHHH---HHH-----HHhhhhCCEEEEEEECCCCccHh----HHHH-HHHHHHcCCCcEEEEEEchhc
Confidence 3467899999974422 111 11123567899999997632110 0000 1122333334445 7999999
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
.+
T Consensus 143 ~~ 144 (208)
T cd04166 143 VD 144 (208)
T ss_pred cc
Confidence 74
No 80
>PRK00049 elongation factor Tu; Reviewed
Probab=91.97 E-value=0.94 Score=41.95 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=48.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCE-EEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADR-IILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~-ivlnK~D~ 107 (284)
+..++||+|+|.. ..+.... ...-..+.++.|||+..-... . .+... .+.......-+ |++||+|+
T Consensus 74 ~~~i~~iDtPG~~---~f~~~~~-----~~~~~aD~~llVVDa~~g~~~--q--t~~~~-~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 74 KRHYAHVDCPGHA---DYVKNMI-----TGAAQMDGAILVVSAADGPMP--Q--TREHI-LLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CeEEEEEECCCHH---HHHHHHH-----hhhccCCEEEEEEECCCCCch--H--HHHHH-HHHHHcCCCEEEEEEeecCC
Confidence 4468999999974 3333322 123467889999999763211 0 00110 11222233444 47899999
Q ss_pred CChhH-HH----HHHHHHHHhC---CCCceeeec
Q 023301 108 VTETE-LG----SLTERIKHIN---AMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~-~~----~~~~~l~~~n---p~a~i~~~~ 133 (284)
++.++ .+ ++.+.++.+. ..++++..+
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iS 174 (396)
T PRK00049 141 VDDEELLELVEMEVRELLSKYDFPGDDTPIIRGS 174 (396)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCccCCcEEEee
Confidence 86433 33 3334444332 246666544
No 81
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=91.90 E-value=0.94 Score=44.19 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=50.5
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHH-hhhhcCCccchHHHHHHHhhc-CEEEEccCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQ-HLNEVKPRFVVNEAVEQVAYA-DRIILNKIDLV 108 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~-~l~~~~~~~~~~~~~~Qi~~A-d~ivlnK~D~~ 108 (284)
...||+++|-.. ..... +......+.++.|||+..-.+ +..+ .+ .....+... =+|++||+|++
T Consensus 51 ~v~~iDtPGhe~---f~~~~-----~~g~~~aD~aILVVDa~~G~~~qT~e----hl--~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 51 RLGFIDVPGHEK---FISNA-----IAGGGGIDAALLVVDADEGVMTQTGE----HL--AVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EEEEEECCCHHH---HHHHH-----HhhhccCCEEEEEEECCCCCcHHHHH----HH--HHHHHcCCCeEEEEEECCCCC
Confidence 446889999532 22221 222346888999999986321 1110 01 112334444 57888999999
Q ss_pred ChhHHHHHHHHHHH----hC--CCCceeeec
Q 023301 109 TETELGSLTERIKH----IN--AMAPVKLAK 133 (284)
Q Consensus 109 ~~~~~~~~~~~l~~----~n--p~a~i~~~~ 133 (284)
+.+.++.+.+.+++ .. +.++++.+|
T Consensus 117 ~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 117 NEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 87766554444443 21 357887765
No 82
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=91.85 E-value=2.7 Score=34.93 Aligned_cols=96 Identities=20% Similarity=0.293 Sum_probs=56.9
Q ss_pred cCCCCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 27 QGQFDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
..+.|+|+|.|+|...-.+ .++.+. .+.....-..++.|+|+..-.+.+... ....+.-.-+-+|++|.
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~---~~~~~~~~~~~~LVlsa~~~~~~~~~~-------~~~~~~~~~~~lIlTKl 150 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELK---KLLEALNPDEVHLVLSATMGQEDLEQA-------LAFYEAFGIDGLILTKL 150 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHH---HHHHHHSSSEEEEEEEGGGGGHHHHHH-------HHHHHHSSTCEEEEEST
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHH---HHhhhcCCccceEEEecccChHHHHHH-------HHHhhcccCceEEEEee
Confidence 3679999999999997542 233332 122233455689999998866554321 11223333578999999
Q ss_pred CCCChhHHHHHHHHHHHhCCCCceeeeccCC
Q 023301 106 DLVTETELGSLTERIKHINAMAPVKLAKYGS 136 (284)
Q Consensus 106 D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~ 136 (284)
|... ..-.+...+.+.. .||-..+.|+
T Consensus 151 Det~--~~G~~l~~~~~~~--~Pi~~it~Gq 177 (196)
T PF00448_consen 151 DETA--RLGALLSLAYESG--LPISYITTGQ 177 (196)
T ss_dssp TSSS--TTHHHHHHHHHHT--SEEEEEESSS
T ss_pred cCCC--CcccceeHHHHhC--CCeEEEECCC
Confidence 9855 2344555554443 5666566653
No 83
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=91.82 E-value=0.83 Score=36.02 Aligned_cols=69 Identities=16% Similarity=0.042 Sum_probs=40.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
..+..+++|+|......+.... .-..+.++.|+|+...... .. ..... ...+....-+||+||+|+.
T Consensus 49 ~~~~~iiDtpG~~~~~~~~~~~--------~~~~d~il~v~d~~~~~~~--~~--~~~~~-~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARG--------ASLTDIAILVVAADDGVMP--QT--IEAIK-LAKAANVPFIVALNKIDKP 115 (168)
T ss_pred cceEEEEeCCCcHHHHHHHHHH--------HhhcCEEEEEEECCCCccH--HH--HHHHH-HHHHcCCCEEEEEEceecc
Confidence 4678999999976544322211 1245678999999763211 00 00001 1234555678999999987
Q ss_pred Ch
Q 023301 109 TE 110 (284)
Q Consensus 109 ~~ 110 (284)
+.
T Consensus 116 ~~ 117 (168)
T cd01887 116 NA 117 (168)
T ss_pred cc
Confidence 43
No 84
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=91.67 E-value=0.58 Score=44.56 Aligned_cols=107 Identities=15% Similarity=0.140 Sum_probs=52.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---------------
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--------------- 94 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--------------- 94 (284)
..++|++++|+-+.+.--..|-. ..++..-..+.+|.|||+....... .+..-...+..+|
T Consensus 206 ~~f~laDtPGliegas~g~gLg~-~fLrhieradvLv~VVD~s~~e~~r---dp~~d~~~i~~EL~~y~~~l~~~~~~~~ 281 (500)
T PRK12296 206 TRFTVADVPGLIPGASEGKGLGL-DFLRHIERCAVLVHVVDCATLEPGR---DPLSDIDALEAELAAYAPALDGDLGLGD 281 (500)
T ss_pred eEEEEEECCCCccccchhhHHHH-HHHHHHHhcCEEEEEECCccccccc---CchhhHHHHHHHHHHhhhcccccchhhh
Confidence 35788999998654322111110 1122233567899999997632100 0000001111122
Q ss_pred --hhcCEEEEccCCCCChhHHH-HHHHHHHHhCCCCceeeecc-CCCChhhh
Q 023301 95 --AYADRIILNKIDLVTETELG-SLTERIKHINAMAPVKLAKY-GSVDMDFV 142 (284)
Q Consensus 95 --~~Ad~ivlnK~D~~~~~~~~-~~~~~l~~~np~a~i~~~~~-g~v~~~~l 142 (284)
...-+||+||+|+.+..++. .+.+.++.. ..+|+.+|. ....+..+
T Consensus 282 l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~--g~~Vf~ISA~tgeGLdEL 331 (500)
T PRK12296 282 LAERPRLVVLNKIDVPDARELAEFVRPELEAR--GWPVFEVSAASREGLREL 331 (500)
T ss_pred hcCCCEEEEEECccchhhHHHHHHHHHHHHHc--CCeEEEEECCCCCCHHHH
Confidence 24568999999997654432 333344333 356776653 23344444
No 85
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.65 E-value=1.9 Score=40.37 Aligned_cols=95 Identities=18% Similarity=0.332 Sum_probs=56.3
Q ss_pred cCCCCEEEEecCCCCCc-HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 27 QGQFDHIVIETTGLAKP-APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p-~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
...+|+|||+|.|.... ..++..+. .+...+.-+.++.|+|+..-...... ...+.+.+. -+-||+||.
T Consensus 180 ~~~~DvVIIDTaGr~~~d~~l~~eL~---~i~~~~~p~e~lLVvda~tgq~~~~~------a~~f~~~v~-i~giIlTKl 249 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQIDEELMEELA---AIKEILNPDEILLVVDAMTGQDAVNT------AKTFNERLG-LTGVVLTKL 249 (428)
T ss_pred hcCCCEEEEeCCCccccCHHHHHHHH---HHHHhhCCceEEEEEeccchHHHHHH------HHHHHhhCC-CCEEEEeCc
Confidence 36799999999997653 34455442 23345566788999999764332211 122233443 468889999
Q ss_pred CCCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 106 DLVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 106 D~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
|... ..-.+.......+ .||.....|
T Consensus 250 D~~~--~~G~~lsi~~~~~--~PI~fi~~G 275 (428)
T TIGR00959 250 DGDA--RGGAALSVRSVTG--KPIKFIGVG 275 (428)
T ss_pred cCcc--cccHHHHHHHHHC--cCEEEEeCC
Confidence 9633 1222444444444 666655555
No 86
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=91.52 E-value=0.35 Score=45.49 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=41.1
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCChhHHHHHHHHHHHhC
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVTETELGSLTERIKHIN 124 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~~~~~~~~~~~l~~~n 124 (284)
.=|-||-+|||++..-+.. ..+..-+.+-.. -+.++++||+|++++++.....+.-+.-|
T Consensus 174 rSDivvqIVDARnPllfr~----~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~n 234 (562)
T KOG1424|consen 174 RSDIVVQIVDARNPLLFRS----PDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNN 234 (562)
T ss_pred hcceEEEEeecCCccccCC----hhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 3456899999999764321 111111222223 57899999999999999988888887766
No 87
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=91.45 E-value=1.1 Score=35.94 Aligned_cols=68 Identities=18% Similarity=0.213 Sum_probs=39.1
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+....|++|+|..+........ + -..+.+|.|+|+...... ... ... .. ..+-...-++|+||+|+.
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~-----~---~~ad~~i~v~D~~~~~~~-~~~--~~~-~~-~~~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSRS-----L---AACEGALLLVDATQGVEA-QTL--ANF-YL-ALENNLEIIPVINKIDLP 132 (179)
T ss_pred cEEEEEEECCCChhhHHHHHHH-----H---HhcCeEEEEEECCCCccH-hhH--HHH-HH-HHHcCCCEEEEEECCCCC
Confidence 4456689999998765544332 1 246788999999763211 000 000 01 111223458899999986
Q ss_pred C
Q 023301 109 T 109 (284)
Q Consensus 109 ~ 109 (284)
+
T Consensus 133 ~ 133 (179)
T cd01890 133 S 133 (179)
T ss_pred c
Confidence 4
No 88
>PLN03127 Elongation factor Tu; Provisional
Probab=91.03 E-value=0.48 Score=44.62 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=39.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~~ 108 (284)
..++||+|+|..+. +..... .....+.++.|||+..-... + .+... .+...+.... ++++||+|++
T Consensus 124 ~~i~~iDtPGh~~f---~~~~~~-----g~~~aD~allVVda~~g~~~--q--t~e~l-~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 124 RHYAHVDCPGHADY---VKNMIT-----GAAQMDGGILVVSAPDGPMP--Q--TKEHI-LLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred eEEEEEECCCccch---HHHHHH-----HHhhCCEEEEEEECCCCCch--h--HHHHH-HHHHHcCCCeEEEEEEeeccC
Confidence 46799999998652 222211 12347889999999753211 0 11111 1123334444 4679999998
Q ss_pred ChhH
Q 023301 109 TETE 112 (284)
Q Consensus 109 ~~~~ 112 (284)
+.++
T Consensus 191 ~~~~ 194 (447)
T PLN03127 191 DDEE 194 (447)
T ss_pred CHHH
Confidence 6444
No 89
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=90.99 E-value=0.51 Score=44.86 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=60.5
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHH-HHHHHhhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNE-AVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~-~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
-.=+|.|+|=.|.+.=. -+..-..++++.||||..-... + .+.+. +.-+...+=+.||||+|+-+
T Consensus 126 lLNLIDTPGHvDFs~EV--------sRslaac~G~lLvVDA~qGvqA--Q----T~anf~lAfe~~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 126 LLNLIDTPGHVDFSGEV--------SRSLAACDGALLVVDASQGVQA--Q----TVANFYLAFEAGLAIIPVLNKIDLPS 191 (650)
T ss_pred EEEeecCCCccccccee--------hehhhhcCceEEEEEcCcCchH--H----HHHHHHHHHHcCCeEEEeeeccCCCC
Confidence 34478999988865311 1123367899999999875432 1 11122 23455667899999999943
Q ss_pred hhHHHHHHHHHHHhC--CCCceeeecc-CCCChhhhh
Q 023301 110 ETELGSLTERIKHIN--AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 110 ~~~~~~~~~~l~~~n--p~a~i~~~~~-g~v~~~~l~ 143 (284)
++.++++..+..+. |.++++..+. .....+.++
T Consensus 192 -adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL 227 (650)
T KOG0462|consen 192 -ADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELL 227 (650)
T ss_pred -CCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHH
Confidence 45677777777764 6677765543 234444443
No 90
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=90.96 E-value=1.5 Score=38.43 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCCCEEEEecCCCCC------cHHH-HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHH
Q 023301 17 KMLLQLAKKKQGQFDHIVIETTGLAK------PAPV-IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNE 89 (284)
Q Consensus 17 ~~l~~l~~~~~~~~d~iiIE~sG~a~------p~~i-~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~ 89 (284)
+++.++++++...+|+++|.|+|=-+ +..| .++|.+ .+. ..|+.|||..+-.... -+.++.
T Consensus 103 dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~las------s~p-tvv~YvvDt~rs~~p~-----tFMSNM 170 (366)
T KOG1532|consen 103 DQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLAS------SFP-TVVVYVVDTPRSTSPT-----TFMSNM 170 (366)
T ss_pred HHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhh------cCC-eEEEEEecCCcCCCch-----hHHHHH
Confidence 34556666545679999999999533 3333 333322 121 2378999987632110 011111
Q ss_pred -----HHHHHhhcCEEEEccCCCCChhH
Q 023301 90 -----AVEQVAYADRIILNKIDLVTETE 112 (284)
Q Consensus 90 -----~~~Qi~~Ad~ivlnK~D~~~~~~ 112 (284)
+.-.-+..=+|++||+|+.+.+-
T Consensus 171 lYAcSilyktklp~ivvfNK~Dv~d~~f 198 (366)
T KOG1532|consen 171 LYACSILYKTKLPFIVVFNKTDVSDSEF 198 (366)
T ss_pred HHHHHHHHhccCCeEEEEecccccccHH
Confidence 22334556789999999987543
No 91
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=90.87 E-value=0.8 Score=43.51 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=49.8
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
+..++||+|+|-. .+..... ...-..+.++.|||+..-... . .+.. ..+...+.... +|++||+|+
T Consensus 106 ~~~i~~iDTPGh~---~f~~~~~-----~~l~~aD~allVVDa~~G~~~--q--t~~~-~~l~~~lg~~~iIvvvNKiD~ 172 (474)
T PRK05124 106 KRKFIIADTPGHE---QYTRNMA-----TGASTCDLAILLIDARKGVLD--Q--TRRH-SFIATLLGIKHLVVAVNKMDL 172 (474)
T ss_pred CcEEEEEECCCcH---HHHHHHH-----HHHhhCCEEEEEEECCCCccc--c--chHH-HHHHHHhCCCceEEEEEeecc
Confidence 4578999999943 2222211 123467789999999763211 0 0000 01223333233 569999999
Q ss_pred CC--hhHHHHHHHHHHH----h--CCCCceeeec
Q 023301 108 VT--ETELGSLTERIKH----I--NAMAPVKLAK 133 (284)
Q Consensus 108 ~~--~~~~~~~~~~l~~----~--np~a~i~~~~ 133 (284)
++ .+.+..+++.++. + .+.++++..+
T Consensus 173 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvS 206 (474)
T PRK05124 173 VDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLS 206 (474)
T ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEE
Confidence 74 3345555555543 2 2456777654
No 92
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.78 E-value=1.2 Score=41.61 Aligned_cols=94 Identities=19% Similarity=0.323 Sum_probs=55.4
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
..+|+|||.|.|-.... .+++.+. .+.....-+.++.|+|+..-...... . ....+...-+-+|+||.|
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~---~i~~~~~p~e~lLVlda~~Gq~a~~~------a-~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEML---QVAEAIQPDNIIFVMDGSIGQAAEAQ------A-KAFKDSVDVGSVIITKLD 250 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHH---HHhhhcCCcEEEEEeccccChhHHHH------H-HHHHhccCCcEEEEECcc
Confidence 57899999999988764 3444432 22234455678999999764332111 1 112334457889999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
.... .-.+....... ..||.....|
T Consensus 251 ~~ar--gG~aLs~~~~t--~~PI~fig~G 275 (429)
T TIGR01425 251 GHAK--GGGALSAVAAT--KSPIIFIGTG 275 (429)
T ss_pred CCCC--ccHHhhhHHHH--CCCeEEEcCC
Confidence 8542 22233333333 4666666555
No 93
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=90.70 E-value=1.8 Score=35.88 Aligned_cols=107 Identities=9% Similarity=-0.025 Sum_probs=52.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---------hcCEE
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---------YADRI 100 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---------~Ad~i 100 (284)
....+++++|..........-+.+......-..+.+|.|+|+.+.... ... ..+.+++. ..-+|
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~-~~~------~~~~~~i~~~~~~~~~~~piii 121 (198)
T cd04142 49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSF-HYV------KLLRQQILETRPAGNKEPPIVV 121 (198)
T ss_pred EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcccCCCCCCEEE
Confidence 345588999975421111100000011112357889999999874332 211 12223332 23478
Q ss_pred EEccCCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhhc
Q 023301 101 ILNKIDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVLG 144 (284)
Q Consensus 101 vlnK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~~ 144 (284)
|.||+|+..... .+...++.++. -.+++++++. .......++.
T Consensus 122 vgNK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~e~Sak~g~~v~~lf~ 167 (198)
T cd04142 122 VGNKRDQQRHRFAPRHVLSVLVRKS-WKCGYLECSAKYNWHILLLFK 167 (198)
T ss_pred EEECccccccccccHHHHHHHHHHh-cCCcEEEecCCCCCCHHHHHH
Confidence 899999954321 12222222222 2467777764 4456666663
No 94
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=90.67 E-value=0.84 Score=35.08 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=37.6
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChh-HHHHHHHHHHHhCCCCceeeec
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTET-ELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~-~~~~~~~~l~~~np~a~i~~~~ 133 (284)
..+.++.|+|+.+...... ..+...+...-++|+||+|+.+.+ ..+...++++..+. .+++.++
T Consensus 62 ~ad~vilv~d~~~~~s~~~--------~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S 126 (142)
T TIGR02528 62 DADVIALVQSATDPESRFP--------PGFASIFVKPVIGLVTKIDLAEADVDIERAKELLETAGA-EPIFEIS 126 (142)
T ss_pred cCCEEEEEecCCCCCcCCC--------hhHHHhccCCeEEEEEeeccCCcccCHHHHHHHHHHcCC-CcEEEEe
Confidence 6778999999977554311 112233344778899999986532 23444555554432 3555554
No 95
>PRK10867 signal recognition particle protein; Provisional
Probab=90.67 E-value=3.1 Score=38.97 Aligned_cols=95 Identities=18% Similarity=0.277 Sum_probs=53.8
Q ss_pred cCCCCEEEEecCCCCCc-HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 27 QGQFDHIVIETTGLAKP-APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p-~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
...+|+|||+|.|.... ..+++.+. .+...+.-+.++.|+|+..-...... ...+.+.+ .-+-+|+||.
T Consensus 181 ~~~~DvVIIDTaGrl~~d~~lm~eL~---~i~~~v~p~evllVlda~~gq~av~~------a~~F~~~~-~i~giIlTKl 250 (433)
T PRK10867 181 ENGYDVVIVDTAGRLHIDEELMDELK---AIKAAVNPDEILLVVDAMTGQDAVNT------AKAFNEAL-GLTGVILTKL 250 (433)
T ss_pred hcCCCEEEEeCCCCcccCHHHHHHHH---HHHHhhCCCeEEEEEecccHHHHHHH------HHHHHhhC-CCCEEEEeCc
Confidence 46799999999997653 44454442 23334455678999999764332211 11122223 2467899999
Q ss_pred CCCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 106 DLVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 106 D~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
|.... .-.+.......+ .||.....|
T Consensus 251 D~~~r--gG~alsi~~~~~--~PI~fig~G 276 (433)
T PRK10867 251 DGDAR--GGAALSIRAVTG--KPIKFIGTG 276 (433)
T ss_pred cCccc--ccHHHHHHHHHC--cCEEEEeCC
Confidence 96331 222344444444 566655544
No 96
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=90.62 E-value=0.81 Score=40.06 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=46.1
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+..+.+|.|+|..+...-... ..-..+.++.|||+..-...-. ..+. ....+....-++++||+|+.
T Consensus 63 ~~~i~liDTPG~~df~~~~~~--------~l~~aD~ailVVDa~~g~~~~t----~~~~-~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 63 DHRINIIDTPGHVDFTIEVER--------SLRVLDGAVAVFDAVAGVEPQT----ETVW-RQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred CEEEEEEECCCcHHHHHHHHH--------HHHHcCEEEEEEECCCCCCHHH----HHHH-HHHHHcCCCEEEEEECCCCC
Confidence 457789999998764432111 1234578999999977432100 1111 11234445678999999986
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
+. ..+.+.+.++..
T Consensus 130 ~a-~~~~~~~~l~~~ 143 (270)
T cd01886 130 GA-DFFRVVEQIREK 143 (270)
T ss_pred CC-CHHHHHHHHHHH
Confidence 43 233444445443
No 97
>PRK04213 GTP-binding protein; Provisional
Probab=90.51 E-value=0.94 Score=37.24 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=39.6
Q ss_pred CEEEEecCCCCCcH-------HHHHHhccccccc-ceeeeceEEEEEcccchHHhhhhc---CCccchHHHHH---HHhh
Q 023301 31 DHIVIETTGLAKPA-------PVIETFCTDELVS-QYVKLDGVITLVDSKHAMQHLNEV---KPRFVVNEAVE---QVAY 96 (284)
Q Consensus 31 d~iiIE~sG~a~p~-------~i~~~l~~~~~l~-~~~~l~~vv~vvD~~~~~~~l~~~---~~~~~~~~~~~---Qi~~ 96 (284)
+..+++++|.+... +-+..++. ..+. ..-.++.++.|+|+..+....... +.......+.. ....
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 131 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIV-RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGI 131 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHH-HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCC
Confidence 57889999975421 22222211 1111 123456789999997653211100 00000011112 2234
Q ss_pred cCEEEEccCCCCChh
Q 023301 97 ADRIILNKIDLVTET 111 (284)
Q Consensus 97 Ad~ivlnK~D~~~~~ 111 (284)
.=+||+||+|+.+..
T Consensus 132 p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 132 PPIVAVNKMDKIKNR 146 (201)
T ss_pred CeEEEEECccccCcH
Confidence 558999999997543
No 98
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.46 E-value=0.93 Score=38.02 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=39.6
Q ss_pred ccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc--------CEEEEccCCCCChhHHHHHHHHH
Q 023301 54 ELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA--------DRIILNKIDLVTETELGSLTERI 120 (284)
Q Consensus 54 ~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A--------d~ivlnK~D~~~~~~~~~~~~~l 120 (284)
+.+...+.+.++|+|||+..|.....+ ++..+.+=+..+ =+|.-||.|+....--+.|++.+
T Consensus 101 e~~~~~~~akaiVFVVDSa~f~k~vrd-----vaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~L 170 (238)
T KOG0090|consen 101 EYLKHNYSAKAIVFVVDSATFLKNVRD-----VAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQL 170 (238)
T ss_pred HHccccccceeEEEEEeccccchhhHH-----HHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHH
Confidence 345566889999999999999876543 333334444444 25666999997644433444333
No 99
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=90.43 E-value=1.9 Score=34.64 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=36.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh------cCEEEEc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY------ADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~------Ad~ivln 103 (284)
....+++++|.......... .+ -..+.+|.|+|+...... ... ...+...+.. .=+|++|
T Consensus 59 ~~~~l~D~~G~~~~~~~~~~-----~~---~~~d~vi~V~D~s~~~~~-~~~-----~~~l~~~~~~~~~~~~p~viv~N 124 (174)
T cd04153 59 IRFLMWDIGGQESLRSSWNT-----YY---TNTDAVILVIDSTDRERL-PLT-----KEELYKMLAHEDLRKAVLLVLAN 124 (174)
T ss_pred eEEEEEECCCCHHHHHHHHH-----Hh---hcCCEEEEEEECCCHHHH-HHH-----HHHHHHHHhchhhcCCCEEEEEE
Confidence 45678889997543322221 11 246789999999874322 111 0112222222 2278889
Q ss_pred cCCCCC
Q 023301 104 KIDLVT 109 (284)
Q Consensus 104 K~D~~~ 109 (284)
|+|+..
T Consensus 125 K~Dl~~ 130 (174)
T cd04153 125 KQDLKG 130 (174)
T ss_pred CCCCCC
Confidence 999864
No 100
>PRK12289 GTPase RsgA; Reviewed
Probab=90.38 E-value=0.44 Score=43.40 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=42.6
Q ss_pred eeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeecc-CCC
Q 023301 59 YVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKY-GSV 137 (284)
Q Consensus 59 ~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v 137 (284)
.-.++.++.|+|+......... -++++. ........=+||+||+|++++++.+.+.+.++..+ .+++.++. ...
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~-LdR~L~--~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g--~~v~~iSA~tg~ 161 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQ-LSRFLV--KAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWG--YQPLFISVETGI 161 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHH-HHHHHH--HHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence 3478889999998642200000 011111 01122334478889999998776665555554433 35555442 233
Q ss_pred Chhhhh
Q 023301 138 DMDFVL 143 (284)
Q Consensus 138 ~~~~l~ 143 (284)
..+.|+
T Consensus 162 GI~eL~ 167 (352)
T PRK12289 162 GLEALL 167 (352)
T ss_pred CHHHHh
Confidence 455554
No 101
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.31 E-value=3.6 Score=36.04 Aligned_cols=108 Identities=19% Similarity=0.259 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH
Q 023301 14 DLVKMLLQLAKKKQGQFDHIVIETTGLAKP-APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE 92 (284)
Q Consensus 14 dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p-~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~ 92 (284)
++..++..+.+ ..++|+|||.+.|-..- .+.++.+.. +.....-+.++.|+||..-...+.+. ... ..
T Consensus 141 ~l~~~l~~l~~--~~~~D~ViIDt~Gr~~~~~~~l~el~~---~~~~~~~~~~~LVl~a~~~~~d~~~~-----~~~-f~ 209 (270)
T PRK06731 141 AMTRALTYFKE--EARVDYILIDTAGKNYRASETVEEMIE---TMGQVEPDYICLTLSASMKSKDMIEI-----ITN-FK 209 (270)
T ss_pred HHHHHHHHHHh--cCCCCEEEEECCCCCcCCHHHHHHHHH---HHhhhCCCeEEEEEcCccCHHHHHHH-----HHH-hC
Confidence 45555555543 35799999999999852 333443321 11223334588999997644332221 011 11
Q ss_pred HHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCC
Q 023301 93 QVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSV 137 (284)
Q Consensus 93 Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v 137 (284)
. ..-|-+|++|.|... ..-.+...+... +.||...+.|+-
T Consensus 210 ~-~~~~~~I~TKlDet~--~~G~~l~~~~~~--~~Pi~~it~Gq~ 249 (270)
T PRK06731 210 D-IHIDGIVFTKFDETA--SSGELLKIPAVS--SAPIVLMTDGQD 249 (270)
T ss_pred C-CCCCEEEEEeecCCC--CccHHHHHHHHH--CcCEEEEeCCCC
Confidence 2 467999999999865 344455555444 467777777643
No 102
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=90.31 E-value=1 Score=37.00 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=45.3
Q ss_pred CCCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHH-HH---HhhcCEEEEc
Q 023301 29 QFDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAV-EQ---VAYADRIILN 103 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~-~Q---i~~Ad~ivln 103 (284)
...+-+|+.+|=..... +++.+. ..-.+.+||+|||+..+...+.+. ..++.+.+. .+ -...=+|+.|
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~------~~~~~k~IIfvvDSs~~~~~~~~~-Ae~Ly~iL~~~~~~~~~~piLIacN 120 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELK------YLSNAKGIIFVVDSSTDQKELRDV-AEYLYDILSDTEVQKNKPPILIACN 120 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHH------HHGGEEEEEEEEETTTHHHHHHHH-HHHHHHHHHHHHCCTT--EEEEEEE
T ss_pred CCEEEEEECCCcHHHHHHHHHhhh------chhhCCEEEEEEeCccchhhHHHH-HHHHHHHHHhhhhccCCCCEEEEEe
Confidence 34567888888777553 222211 123588999999999877655442 112222221 11 2334457779
Q ss_pred cCCCCChhHHHHHHHHHH
Q 023301 104 KIDLVTETELGSLTERIK 121 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~ 121 (284)
|.|+........+++.|.
T Consensus 121 K~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 121 KQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp -TTSTT---HHHHHHHHH
T ss_pred CccccccCCHHHHHHHHH
Confidence 999977554555555554
No 103
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=90.25 E-value=0.91 Score=35.79 Aligned_cols=65 Identities=26% Similarity=0.299 Sum_probs=33.8
Q ss_pred eceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 62 LDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 62 l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
.+.++.|+|+...... ....+.. ........-++|+||+|+.+.+....... +.. ....+++.++
T Consensus 13 aD~vl~V~D~~~~~~~----~~~~l~~-~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~-~~~-~~~~~~~~iS 77 (156)
T cd01859 13 SDVVLEVLDARDPELT----RSRKLER-YVLELGKKLLIVLNKADLVPKEVLEKWKS-IKE-SEGIPVVYVS 77 (156)
T ss_pred CCEEEEEeeCCCCccc----CCHHHHH-HHHhCCCcEEEEEEhHHhCCHHHHHHHHH-HHH-hCCCcEEEEE
Confidence 6779999999764321 1111111 11112334588899999987655443332 222 1335565544
No 104
>PRK03003 GTP-binding protein Der; Reviewed
Probab=90.25 E-value=2.1 Score=40.56 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=53.1
Q ss_pred CEEEEecCCCCCc------HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEE
Q 023301 31 DHIVIETTGLAKP------APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRII 101 (284)
Q Consensus 31 d~iiIE~sG~a~p------~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~iv 101 (284)
.+.++.|.|+-.- .+.+..+.. ....-..+.+|.|+|+..-..... . ....++ ...=+||
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~---~~~i~~ad~vilV~Da~~~~s~~~------~--~~~~~~~~~~~piIiV 328 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRT---HAAIEAAEVAVVLIDASEPISEQD------Q--RVLSMVIEAGRALVLA 328 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHH---HHHHhcCCEEEEEEeCCCCCCHHH------H--HHHHHHHHcCCCEEEE
Confidence 3578899997321 122222111 011125778999999976322110 0 112232 2345788
Q ss_pred EccCCCCChhHHHHHHHHHHHhC---CCCceeeecc-CCCChhhhh
Q 023301 102 LNKIDLVTETELGSLTERIKHIN---AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 102 lnK~D~~~~~~~~~~~~~l~~~n---p~a~i~~~~~-g~v~~~~l~ 143 (284)
+||+|+.+.+....+.+.++... +.++++.++. .......++
T Consensus 329 ~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf 374 (472)
T PRK03003 329 FNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLV 374 (472)
T ss_pred EECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHH
Confidence 89999987554444444444321 3467776653 334455554
No 105
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=90.25 E-value=0.75 Score=40.33 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=39.8
Q ss_pred CCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCChhHHHHHHHH
Q 023301 41 AKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVTETELGSLTER 119 (284)
Q Consensus 41 a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~~~~~~~~~~~ 119 (284)
+.|..+.+++.. .....-..|.|+.|+|+...... .. ..+.+.+. ..-++|+||+|+++.++.....+.
T Consensus 3 WfpgHm~k~~~~--~~~~l~~aDvVl~V~Dar~p~~~----~~----~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~ 72 (276)
T TIGR03596 3 WFPGHMAKARRE--IKEKLKLVDVVIEVLDARIPLSS----RN----PMIDEIRGNKPRLIVLNKADLADPAVTKQWLKY 72 (276)
T ss_pred cChHHHHHHHHH--HHHHHhhCCEEEEEEeCCCCCCC----CC----hhHHHHHCCCCEEEEEEccccCCHHHHHHHHHH
Confidence 346665555432 11122356778999999753321 11 11223332 345788899999877655555555
Q ss_pred HHH
Q 023301 120 IKH 122 (284)
Q Consensus 120 l~~ 122 (284)
++.
T Consensus 73 ~~~ 75 (276)
T TIGR03596 73 FEE 75 (276)
T ss_pred HHH
Confidence 543
No 106
>PRK12736 elongation factor Tu; Reviewed
Probab=90.22 E-value=1.5 Score=40.52 Aligned_cols=92 Identities=22% Similarity=0.295 Sum_probs=49.0
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
+..+.||.|+|..+ .+... +...-..+.++.|||+..-.... .+.... +........ +|++||+|+
T Consensus 74 ~~~i~~iDtPGh~~---f~~~~-----~~~~~~~d~~llVvd~~~g~~~~----t~~~~~-~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 74 KRHYAHVDCPGHAD---YVKNM-----ITGAAQMDGAILVVAATDGPMPQ----TREHIL-LARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CcEEEEEECCCHHH---HHHHH-----HHHHhhCCEEEEEEECCCCCchh----HHHHHH-HHHHcCCCEEEEEEEecCC
Confidence 34679999999432 22221 11223568899999997632110 001111 123334444 467999999
Q ss_pred CChhHH-H----HHHHHHHHhCC---CCceeeec
Q 023301 108 VTETEL-G----SLTERIKHINA---MAPVKLAK 133 (284)
Q Consensus 108 ~~~~~~-~----~~~~~l~~~np---~a~i~~~~ 133 (284)
++.+++ + ++++.++.+.- .++++..+
T Consensus 141 ~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vS 174 (394)
T PRK12736 141 VDDEELLELVEMEVRELLSEYDFPGDDIPVIRGS 174 (394)
T ss_pred cchHHHHHHHHHHHHHHHHHhCCCcCCccEEEee
Confidence 865443 2 34444544432 36777655
No 107
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=90.12 E-value=1.5 Score=34.32 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=41.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D 106 (284)
....+++++|......+.... + -..+.++.|+|+...... ... ...+.. +..+. ...=+||+||+|
T Consensus 43 ~~~~i~Dt~G~~~~~~~~~~~-----~---~~~~~ii~v~d~~~~~~~-~~~-~~~~~~-~~~~~~~~~~piiiv~nK~D 111 (158)
T cd04151 43 LKFQVWDLGGQTSIRPYWRCY-----Y---SNTDAIIYVVDSTDRDRL-GTA-KEELHA-MLEEEELKGAVLLVFANKQD 111 (158)
T ss_pred EEEEEEECCCCHHHHHHHHHH-----h---cCCCEEEEEEECCCHHHH-HHH-HHHHHH-HHhchhhcCCcEEEEEeCCC
Confidence 456788999986654432221 1 246779999999875321 110 001111 11111 234578889999
Q ss_pred CCChhHHHHHHH
Q 023301 107 LVTETELGSLTE 118 (284)
Q Consensus 107 ~~~~~~~~~~~~ 118 (284)
+.+.....++.+
T Consensus 112 l~~~~~~~~i~~ 123 (158)
T cd04151 112 MPGALSEAEISE 123 (158)
T ss_pred CCCCCCHHHHHH
Confidence 865432333433
No 108
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=89.99 E-value=1 Score=38.19 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=48.3
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKI 105 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~ 105 (284)
+....|+.|+|..+.......- .-..++++.|+|+..-...-. .....+. ...=++++||+
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~--------l~~aD~~ilVvD~~~g~~~~t--------~~~l~~~~~~~~p~ilviNKi 135 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAA--------LRLCDGALVVVDAVEGVCVQT--------ETVLRQALKERVKPVLVINKI 135 (222)
T ss_pred ceEEEEECCCCccccHHHHHHH--------HHhcCeeEEEEECCCCCCHHH--------HHHHHHHHHcCCCEEEEEECC
Confidence 4556789999998865433221 234677899999976432100 1112222 23558889999
Q ss_pred CCC------Ch-hHHHHHHHHHHHhCC
Q 023301 106 DLV------TE-TELGSLTERIKHINA 125 (284)
Q Consensus 106 D~~------~~-~~~~~~~~~l~~~np 125 (284)
|+. ++ +...++.+.+.++|.
T Consensus 136 D~~~~e~~~~~~~~~~~~~~ii~~~n~ 162 (222)
T cd01885 136 DRLILELKLSPEEAYQRLARIIEQVNA 162 (222)
T ss_pred CcchhhhcCCHHHHHHHHHHHHHHHhH
Confidence 985 33 334566666666764
No 109
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=89.90 E-value=0.88 Score=42.37 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=47.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchHHHHHHHhhcC-EEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVNEAVEQVAYAD-RIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D 106 (284)
..+.|++++|-.+ +... .+...-.++.++.|+|+.... .+... .+ . ....+.... +||+||+|
T Consensus 85 ~~i~liDtPG~~~---f~~~-----~~~~~~~~D~~llVVDa~~~~~~~~t~~----~l-~-~l~~~~i~~iiVVlNK~D 150 (411)
T PRK04000 85 RRVSFVDAPGHET---LMAT-----MLSGAALMDGAILVIAANEPCPQPQTKE----HL-M-ALDIIGIKNIVIVQNKID 150 (411)
T ss_pred cEEEEEECCCHHH---HHHH-----HHHHHhhCCEEEEEEECCCCCCChhHHH----HH-H-HHHHcCCCcEEEEEEeec
Confidence 4578999999432 2222 222334578899999998632 11000 01 1 122333333 67789999
Q ss_pred CCChhHHH----HHHHHHHHhC-CCCceeeec
Q 023301 107 LVTETELG----SLTERIKHIN-AMAPVKLAK 133 (284)
Q Consensus 107 ~~~~~~~~----~~~~~l~~~n-p~a~i~~~~ 133 (284)
+.++++.. .++++++... ...+++.++
T Consensus 151 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vS 182 (411)
T PRK04000 151 LVSKERALENYEQIKEFVKGTVAENAPIIPVS 182 (411)
T ss_pred cccchhHHHHHHHHHHHhccccCCCCeEEEEE
Confidence 98765543 3333333221 246677665
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=89.69 E-value=1.6 Score=34.93 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=45.3
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH-H-HhhcCEEEEccCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE-Q-VAYADRIILNKIDLV 108 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~-Q-i~~Ad~ivlnK~D~~ 108 (284)
...+++++|........... + -..+.++.|+|+...... .+.. .++...+.. . -...=+||+||+|+.
T Consensus 59 ~l~l~D~~G~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~-~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 128 (173)
T cd04154 59 KLNIWDVGGQKTLRPYWRNY-----F---ESTDALIWVVDSSDRLRL-DDCK-RELKELLQEERLAGATLLILANKQDLP 128 (173)
T ss_pred EEEEEECCCCHHHHHHHHHH-----h---CCCCEEEEEEECCCHHHH-HHHH-HHHHHHHhChhhcCCCEEEEEECcccc
Confidence 34678888865433322211 1 145778999999875321 1110 011111111 1 112346777999996
Q ss_pred ChhHHHHHHHHHHHh---CCCCceeeec
Q 023301 109 TETELGSLTERIKHI---NAMAPVKLAK 133 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~---np~a~i~~~~ 133 (284)
.....+.+.+.++.. ....++++++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (173)
T cd04154 129 GALSEEEIREALELDKISSHHWRIQPCS 156 (173)
T ss_pred cCCCHHHHHHHhCccccCCCceEEEecc
Confidence 544444455544322 1234566554
No 111
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.63 E-value=3.5 Score=38.28 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHhhcCCCCEEEEecCCCCCc-HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHH
Q 023301 13 GDLVKMLLQLAKKKQGQFDHIVIETTGLAKP-APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAV 91 (284)
Q Consensus 13 ~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p-~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~ 91 (284)
.++.++|..+.+ ..++|+|||+|.|-..- ...+..+.. .+ ....-+.++.|+|+..-...+.+. ... .
T Consensus 306 ~~L~~aL~~lk~--~~~~DvVLIDTaGRs~kd~~lm~EL~~--~l-k~~~PdevlLVLsATtk~~d~~~i-----~~~-F 374 (436)
T PRK11889 306 AAMTRALTYFKE--EARVDYILIDTAGKNYRASETVEEMIE--TM-GQVEPDYICLTLSASMKSKDMIEI-----ITN-F 374 (436)
T ss_pred HHHHHHHHHHHh--ccCCCEEEEeCccccCcCHHHHHHHHH--HH-hhcCCCeEEEEECCccChHHHHHH-----HHH-h
Confidence 345566655543 34699999999999773 233333321 11 122334578889986544332211 011 1
Q ss_pred HHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhh
Q 023301 92 EQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFV 142 (284)
Q Consensus 92 ~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l 142 (284)
.. ..-|-+|++|.|... ..-.+...+... +.||...+.|+-=++++
T Consensus 375 ~~-~~idglI~TKLDET~--k~G~iLni~~~~--~lPIsyit~GQ~VPeDI 420 (436)
T PRK11889 375 KD-IHIDGIVFTKFDETA--SSGELLKIPAVS--SAPIVLMTDGQDVKKNI 420 (436)
T ss_pred cC-CCCCEEEEEcccCCC--CccHHHHHHHHH--CcCEEEEeCCCCCCcch
Confidence 22 456899999999865 344555555544 36777777764333333
No 112
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=89.63 E-value=0.52 Score=44.41 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=43.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
....++.|.|+-++...++.+.....+...-..+.++.|+|+...... .+ . ..+...-...-++|+||+|+.+
T Consensus 263 ~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~-~~-----~-~~l~~~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 263 IPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTE-ED-----D-EILEELKDKPVIVVLNKADLTG 335 (449)
T ss_pred eEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCCh-hH-----H-HHHHhcCCCCcEEEEEhhhccc
Confidence 346789999998877655442111112223457789999999764321 00 0 1112111234588899999976
Q ss_pred hhH
Q 023301 110 ETE 112 (284)
Q Consensus 110 ~~~ 112 (284)
...
T Consensus 336 ~~~ 338 (449)
T PRK05291 336 EID 338 (449)
T ss_pred cch
Confidence 543
No 113
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=89.56 E-value=0.73 Score=37.14 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=31.4
Q ss_pred eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCChhHHHHHHHHHH
Q 023301 60 VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVTETELGSLTERIK 121 (284)
Q Consensus 60 ~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~~~~~~~~~~~l~ 121 (284)
-..+.++.|+|+...... .+. .+...+. ..-++|+||+|+.++++.....+.++
T Consensus 18 ~~aD~il~v~D~~~~~~~----~~~----~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~ 72 (171)
T cd01856 18 KLVDLVIEVRDARIPLSS----RNP----LLEKILGNKPRIIVLNKADLADPKKTKKWLKYFE 72 (171)
T ss_pred hhCCEEEEEeeccCccCc----CCh----hhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHH
Confidence 466779999999754321 111 1223332 34688999999987655444434433
No 114
>PRK12735 elongation factor Tu; Reviewed
Probab=89.40 E-value=1.5 Score=40.64 Aligned_cols=88 Identities=18% Similarity=0.282 Sum_probs=47.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH-HhhhhcCCccchHHHHHHH---hhcCEE-EEc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM-QHLNEVKPRFVVNEAVEQV---AYADRI-ILN 103 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~-~~l~~~~~~~~~~~~~~Qi---~~Ad~i-vln 103 (284)
+..+.||+|+|.. ..+.... ......+.++.|||+..-. .+. ......+ ....+| ++|
T Consensus 74 ~~~i~~iDtPGh~---~f~~~~~-----~~~~~aD~~llVvda~~g~~~qt---------~e~l~~~~~~gi~~iivvvN 136 (396)
T PRK12735 74 NRHYAHVDCPGHA---DYVKNMI-----TGAAQMDGAILVVSAADGPMPQT---------REHILLARQVGVPYIVVFLN 136 (396)
T ss_pred CcEEEEEECCCHH---HHHHHHH-----hhhccCCEEEEEEECCCCCchhH---------HHHHHHHHHcCCCeEEEEEE
Confidence 3467999999973 3333221 2234678899999997622 111 1112222 233354 689
Q ss_pred cCCCCChhH-HH----HHHHHHHHhC-C--CCceeeec
Q 023301 104 KIDLVTETE-LG----SLTERIKHIN-A--MAPVKLAK 133 (284)
Q Consensus 104 K~D~~~~~~-~~----~~~~~l~~~n-p--~a~i~~~~ 133 (284)
|+|+++.++ .+ ++++.++.+. + +.+++..+
T Consensus 137 K~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~S 174 (396)
T PRK12735 137 KCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGS 174 (396)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecc
Confidence 999986433 22 3444444432 2 35666554
No 115
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=89.32 E-value=0.5 Score=46.16 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=53.3
Q ss_pred CEEEEecCCCCCcHHHH--HHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccC
Q 023301 31 DHIVIETTGLAKPAPVI--ETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKI 105 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~--~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~ 105 (284)
...+++++|..+....- +.+.. ..+. .-..+.++.|+|+.++...+. ...|+ ...=++++||+
T Consensus 42 ~i~lvDtPG~~~~~~~s~~e~v~~-~~l~-~~~aDvvI~VvDat~ler~l~----------l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTFSLEEEVAR-DYLL-NEKPDLVVNVVDASNLERNLY----------LTLQLLELGIPMILALNLV 109 (591)
T ss_pred EEEEEECCCccccCccchHHHHHH-HHHh-hcCCCEEEEEecCCcchhhHH----------HHHHHHhcCCCEEEEEehh
Confidence 46789999987754321 00100 0011 114688999999998654321 12233 34557889999
Q ss_pred CCCChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 106 DLVTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 106 D~~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+.+...+..-.+.+.+... .+++.++. .....+.++
T Consensus 110 Dl~~~~~i~~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 110 DEAEKKGIRIDEEKLEERLG-VPVVPTSATEGRGIERLK 147 (591)
T ss_pred HHHHhCCChhhHHHHHHHcC-CCEEEEECCCCCCHHHHH
Confidence 98654333222233333322 67776653 233455554
No 116
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=89.13 E-value=1.2 Score=41.30 Aligned_cols=90 Identities=19% Similarity=0.280 Sum_probs=48.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH-HhhhhcCCccchHHHHHHHhhcCE-EEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM-QHLNEVKPRFVVNEAVEQVAYADR-IILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~-~~l~~~~~~~~~~~~~~Qi~~Ad~-ivlnK~D~ 107 (284)
..+.||+|+|..+. +... +...-..+.++.|||+..-. .+.. .... ........-+ |++||+|+
T Consensus 75 ~~~~liDtpGh~~f---~~~~-----~~~~~~~D~~ilVvda~~g~~~qt~-----e~l~-~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 75 RHYAHVDCPGHADY---VKNM-----ITGAAQMDGAILVVSATDGPMPQTR-----EHIL-LARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred EEEEEEECCchHHH---HHHH-----HHHHhhCCEEEEEEECCCCCcHHHH-----HHHH-HHHHcCCCEEEEEEEeccc
Confidence 35789999997542 2221 11223578899999997632 1110 0001 1223333445 46899999
Q ss_pred CChhHH-H----HHHHHHHHhC-C--CCceeeec
Q 023301 108 VTETEL-G----SLTERIKHIN-A--MAPVKLAK 133 (284)
Q Consensus 108 ~~~~~~-~----~~~~~l~~~n-p--~a~i~~~~ 133 (284)
++.+++ + +++++++... + .++++.++
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vS 174 (394)
T TIGR00485 141 VDDEELLELVEMEVRELLSEYDFPGDDTPIIRGS 174 (394)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCccCccEEECc
Confidence 875442 2 3555555443 2 26777655
No 117
>CHL00071 tufA elongation factor Tu
Probab=88.99 E-value=1.5 Score=40.73 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=49.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCE-EEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADR-IILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~-ivlnK~D~ 107 (284)
+..++||.++|.. ..+.... ...-..+.++.|||+..-.... .+... .+........+ +++||+|+
T Consensus 74 ~~~~~~iDtPGh~---~~~~~~~-----~~~~~~D~~ilVvda~~g~~~q----t~~~~-~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 74 NRHYAHVDCPGHA---DYVKNMI-----TGAAQMDGAILVVSAADGPMPQ----TKEHI-LLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CeEEEEEECCChH---HHHHHHH-----HHHHhCCEEEEEEECCCCCcHH----HHHHH-HHHHHcCCCEEEEEEEccCC
Confidence 3467999999943 2233221 1233578899999997632110 00111 11233334434 67999999
Q ss_pred CChhHH-H----HHHHHHHHhC--C-CCceeeec
Q 023301 108 VTETEL-G----SLTERIKHIN--A-MAPVKLAK 133 (284)
Q Consensus 108 ~~~~~~-~----~~~~~l~~~n--p-~a~i~~~~ 133 (284)
++.+++ + ++.+.++.+. + .++++..+
T Consensus 141 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~S 174 (409)
T CHL00071 141 VDDEELLELVELEVRELLSKYDFPGDDIPIVSGS 174 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcc
Confidence 875542 2 4455555443 2 25666543
No 118
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=88.99 E-value=0.72 Score=46.14 Aligned_cols=106 Identities=16% Similarity=0.115 Sum_probs=57.0
Q ss_pred CCEEEEecCCCCCcHHH------HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEc
Q 023301 30 FDHIVIETTGLAKPAPV------IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i------~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivln 103 (284)
.++.+++|+|+...... +..+.. ....-..+.++.|+|+..-..... ..+.. .......+-+||+|
T Consensus 498 ~~~~liDTaG~~~~~~~~~~~e~~~~~r~---~~~i~~advvilViDat~~~s~~~----~~i~~-~~~~~~~piIiV~N 569 (712)
T PRK09518 498 EDWLFIDTAGIKRRQHKLTGAEYYSSLRT---QAAIERSELALFLFDASQPISEQD----LKVMS-MAVDAGRALVLVFN 569 (712)
T ss_pred CEEEEEECCCcccCcccchhHHHHHHHHH---HHHhhcCCEEEEEEECCCCCCHHH----HHHHH-HHHHcCCCEEEEEE
Confidence 35678999998643221 111110 111224677999999976432110 00101 11223456789999
Q ss_pred cCCCCChhHHHHHHHHHHHhC---CCCceeeecc-CCCChhhhh
Q 023301 104 KIDLVTETELGSLTERIKHIN---AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~n---p~a~i~~~~~-g~v~~~~l~ 143 (284)
|+|+.+.+..+.+++.++... +.++++.++. .......++
T Consensus 570 K~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~ 613 (712)
T PRK09518 570 KWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLA 613 (712)
T ss_pred chhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHH
Confidence 999988666666666665433 4566665542 233444444
No 119
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.97 E-value=4.6 Score=37.24 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHhhcCCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHH-
Q 023301 13 GDLVKMLLQLAKKKQGQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEA- 90 (284)
Q Consensus 13 ~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~- 90 (284)
.++..+|..+.. ....|+|||+|.|..... ..++.+. .+......+.++.|+++..-...+.+ .+
T Consensus 271 ~dL~~al~~l~~--~~~~D~VLIDTAGr~~~d~~~l~EL~---~l~~~~~p~~~~LVLsag~~~~d~~~--------i~~ 337 (407)
T PRK12726 271 AELEEAVQYMTY--VNCVDHILIDTVGRNYLAEESVSEIS---AYTDVVHPDLTCFTFSSGMKSADVMT--------ILP 337 (407)
T ss_pred HHHHHHHHHHHh--cCCCCEEEEECCCCCccCHHHHHHHH---HHhhccCCceEEEECCCcccHHHHHH--------HHH
Confidence 456666665553 356899999999997632 2333332 12222333445677887443322211 11
Q ss_pred HHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCC
Q 023301 91 VEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGS 136 (284)
Q Consensus 91 ~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~ 136 (284)
.-+...-+-+|+||.|... ..-.+...+... ..||...+.|+
T Consensus 338 ~f~~l~i~glI~TKLDET~--~~G~~Lsv~~~t--glPIsylt~GQ 379 (407)
T PRK12726 338 KLAEIPIDGFIITKMDETT--RIGDLYTVMQET--NLPVLYMTDGQ 379 (407)
T ss_pred hcCcCCCCEEEEEcccCCC--CccHHHHHHHHH--CCCEEEEecCC
Confidence 1123346889999999854 344555554444 36777677764
No 120
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=88.62 E-value=0.99 Score=42.18 Aligned_cols=107 Identities=13% Similarity=0.173 Sum_probs=50.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchHHHH---HH-HhhcCEEEEc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVNEAV---EQ-VAYADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~~~~---~Q-i~~Ad~ivln 103 (284)
...++++++|+..-+.--..|- ...++..-..+.+|.|||+.... ..+.+. ..+..++. .+ ....-+||+|
T Consensus 206 ~~~~laD~PGliega~~~~gLg-~~fLrhier~~llI~VID~s~~~~~dp~e~~--~~i~~EL~~y~~~L~~kP~IVV~N 282 (424)
T PRK12297 206 RSFVMADIPGLIEGASEGVGLG-HQFLRHIERTRVIVHVIDMSGSEGRDPIEDY--EKINKELKLYNPRLLERPQIVVAN 282 (424)
T ss_pred ceEEEEECCCCcccccccchHH-HHHHHHHhhCCEEEEEEeCCccccCChHHHH--HHHHHHHhhhchhccCCcEEEEEe
Confidence 4578899999854221100110 01222334578899999996531 111110 00111111 11 2346689999
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 104 KIDLVTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+|+.... +.+.+..+.+. .+++.+|. .....+.++
T Consensus 283 K~DL~~~~--e~l~~l~~~l~--~~i~~iSA~tgeGI~eL~ 319 (424)
T PRK12297 283 KMDLPEAE--ENLEEFKEKLG--PKVFPISALTGQGLDELL 319 (424)
T ss_pred CCCCcCCH--HHHHHHHHHhC--CcEEEEeCCCCCCHHHHH
Confidence 99984322 22333333333 45665543 333454444
No 121
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.58 E-value=2.1 Score=39.25 Aligned_cols=71 Identities=25% Similarity=0.380 Sum_probs=48.2
Q ss_pred cCCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 27 QGQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
+.++|.||+.|||=..-. .+.+.+. .....+.-+.||.|+|+..-...... .....|--.---|+|+|.
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~---~v~~ai~Pd~vi~VmDasiGQaae~Q-------a~aFk~~vdvg~vIlTKl 250 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMK---QVSKAIKPDEIIFVMDASIGQAAEAQ-------ARAFKETVDVGAVILTKL 250 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHH---HHHhhcCCCeEEEEEeccccHhHHHH-------HHHHHHhhccceEEEEec
Confidence 479999999999998844 3333332 23456778899999999875543221 122445555566889999
Q ss_pred CC
Q 023301 106 DL 107 (284)
Q Consensus 106 D~ 107 (284)
|-
T Consensus 251 DG 252 (483)
T KOG0780|consen 251 DG 252 (483)
T ss_pred cc
Confidence 96
No 122
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=88.49 E-value=1.1 Score=38.58 Aligned_cols=106 Identities=18% Similarity=0.258 Sum_probs=49.6
Q ss_pred CCEEEEecCCC--CCcHHHHHHhcccccccc--eeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 30 FDHIVIETTGL--AKPAPVIETFCTDELVSQ--YVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 30 ~d~iiIE~sG~--a~p~~i~~~l~~~~~l~~--~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
-|+|.++..+- +-...|++.. ..+.+ .-.++.++.|.|+......+... ++++. . ...-...=+||+||+
T Consensus 4 GD~V~~~~~~~~~~~i~~i~eR~---~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~-~-~~~~~i~~vIV~NK~ 77 (245)
T TIGR00157 4 GDRVVWEPGNVVKVYGGAIAERK---NELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLV-V-AEAQNIEPIIVLNKI 77 (245)
T ss_pred CcEEEEEecCCCceEEEEEeccc---ceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHH-H-HHHCCCCEEEEEECc
Confidence 38888886532 2222222221 11211 23678889999887532111110 11211 1 111122336888999
Q ss_pred CCCChhHHH-HHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 106 DLVTETELG-SLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 106 D~~~~~~~~-~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+.+..+.. ...+..++ ...+++.++. ..-..+.++
T Consensus 78 DL~~~~~~~~~~~~~~~~--~g~~v~~~SAktg~gi~eLf 115 (245)
T TIGR00157 78 DLLDDEDMEKEQLDIYRN--IGYQVLMTSSKNQDGLKELI 115 (245)
T ss_pred ccCCCHHHHHHHHHHHHH--CCCeEEEEecCCchhHHHHH
Confidence 997654432 22233333 2356776653 233455554
No 123
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=88.30 E-value=1.1 Score=39.59 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=40.6
Q ss_pred CCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCChhHHHHHHHH
Q 023301 41 AKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVTETELGSLTER 119 (284)
Q Consensus 41 a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~~~~~~~~~~~ 119 (284)
+.|..+.+++.. ..+..-..|.|+.|+|++..... .. ..+.+.+ ...-++|+||+|+++.++.+...+.
T Consensus 6 wfpgHm~k~~~~--l~~~l~~aDvIL~VvDar~p~~~----~~----~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~ 75 (287)
T PRK09563 6 WFPGHMAKARRE--IKENLKLVDVVIEVLDARIPLSS----EN----PMIDKIIGNKPRLLILNKSDLADPEVTKKWIEY 75 (287)
T ss_pred CcHHHHHHHHHH--HHHHhhhCCEEEEEEECCCCCCC----CC----hhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHH
Confidence 456666665432 12223467789999999764321 11 1122222 3456899999999876555444444
Q ss_pred HH
Q 023301 120 IK 121 (284)
Q Consensus 120 l~ 121 (284)
++
T Consensus 76 ~~ 77 (287)
T PRK09563 76 FE 77 (287)
T ss_pred HH
Confidence 44
No 124
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=88.17 E-value=0.68 Score=39.76 Aligned_cols=87 Identities=21% Similarity=0.200 Sum_probs=40.7
Q ss_pred CCCEEEEecCCCCCcHHH---HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 29 QFDHIVIETTGLAKPAPV---IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i---~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
+.+++++.|+|=-+.-.. ...+. ..+.....+ .+|.++|+..+.....-...-...-...-+++..-+.|+||+
T Consensus 90 ~~~y~l~DtPGQiElf~~~~~~~~i~--~~L~~~~~~-~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~ 166 (238)
T PF03029_consen 90 EDDYLLFDTPGQIELFTHSDSGRKIV--ERLQKNGRL-VVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKI 166 (238)
T ss_dssp H-SEEEEE--SSHHHHHHSHHHHHHH--HTSSS-----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--G
T ss_pred CCcEEEEeCCCCEEEEEechhHHHHH--HHHhhhcce-EEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeecc
Confidence 449999999997663221 11111 122222333 478999998765421100000011123566889999999999
Q ss_pred CCCChhHHHHHHHH
Q 023301 106 DLVTETELGSLTER 119 (284)
Q Consensus 106 D~~~~~~~~~~~~~ 119 (284)
|+.++. .+...++
T Consensus 167 Dl~~~~-~~~~l~~ 179 (238)
T PF03029_consen 167 DLLSKY-LEFILEW 179 (238)
T ss_dssp GGS-HH-HHHHHHH
T ss_pred Ccccch-hHHHHHH
Confidence 999855 4444333
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=88.03 E-value=2.6 Score=32.83 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=44.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D 106 (284)
.+..+++++|--.-..+...+ + -..+.++.|+|+...... .... ..+ ..+..+.. ..=+++.||+|
T Consensus 43 ~~~~i~D~~G~~~~~~~~~~~-----~---~~~~~~i~v~D~~~~~~~-~~~~-~~~-~~~~~~~~~~~~piiiv~nK~D 111 (158)
T cd00878 43 VSFTVWDVGGQDKIRPLWKHY-----Y---ENTNGIIFVVDSSDRERI-EEAK-EEL-HKLLNEEELKGVPLLIFANKQD 111 (158)
T ss_pred EEEEEEECCCChhhHHHHHHH-----h---ccCCEEEEEEECCCHHHH-HHHH-HHH-HHHHhCcccCCCcEEEEeeccC
Confidence 466788999976544333322 1 134789999999874221 1100 000 11112111 23366789999
Q ss_pred CCChhHHHHHHHHHHH
Q 023301 107 LVTETELGSLTERIKH 122 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~ 122 (284)
+......+++.+.++.
T Consensus 112 ~~~~~~~~~~~~~~~~ 127 (158)
T cd00878 112 LPGALSVSELIEKLGL 127 (158)
T ss_pred CccccCHHHHHHhhCh
Confidence 9775555556555554
No 126
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=87.76 E-value=1.5 Score=40.73 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=57.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccc-hHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKH-AMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~-~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
.-.-||+++|-.+. |..++ ....-++..+.|||+.. +..+..+. -++.+.+..-. +||+||+|.
T Consensus 50 ~~~~fIDvpgh~~~--i~~mi------ag~~~~d~alLvV~~deGl~~qtgEh------L~iLdllgi~~giivltk~D~ 115 (447)
T COG3276 50 GVMGFIDVPGHPDF--ISNLL------AGLGGIDYALLVVAADEGLMAQTGEH------LLILDLLGIKNGIIVLTKADR 115 (447)
T ss_pred CceEEeeCCCcHHH--HHHHH------hhhcCCceEEEEEeCccCcchhhHHH------HHHHHhcCCCceEEEEecccc
Confidence 35678999996552 22222 12335667899999943 33332221 12467777777 899999999
Q ss_pred CChhHHHHHHHHHHHh--CCCCceeeecc
Q 023301 108 VTETELGSLTERIKHI--NAMAPVKLAKY 134 (284)
Q Consensus 108 ~~~~~~~~~~~~l~~~--np~a~i~~~~~ 134 (284)
+++++++...+.|.+- .+.++++.++.
T Consensus 116 ~d~~r~e~~i~~Il~~l~l~~~~i~~~s~ 144 (447)
T COG3276 116 VDEARIEQKIKQILADLSLANAKIFKTSA 144 (447)
T ss_pred ccHHHHHHHHHHHHhhccccccccccccc
Confidence 9988776665555543 25677776654
No 127
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=87.61 E-value=4.3 Score=31.69 Aligned_cols=64 Identities=13% Similarity=0.051 Sum_probs=35.0
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc------CEEEEccCCCCChh--HHHHHHHHHHHhCCCCceeee
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA------DRIILNKIDLVTET--ELGSLTERIKHINAMAPVKLA 132 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A------d~ivlnK~D~~~~~--~~~~~~~~l~~~np~a~i~~~ 132 (284)
..+.+|.|+|+.+.... ... .....++... =+|++||+|+.+.. ..+...+..+..+ .+++++
T Consensus 73 ~~~~~i~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~ 143 (163)
T cd01860 73 GAAAAIVVYDITSEESF-EKA------KSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENG--LLFFET 143 (163)
T ss_pred cCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcC--CEEEEE
Confidence 35789999999875432 111 1112222222 26677999987422 2344555555444 556665
Q ss_pred c
Q 023301 133 K 133 (284)
Q Consensus 133 ~ 133 (284)
+
T Consensus 144 S 144 (163)
T cd01860 144 S 144 (163)
T ss_pred E
Confidence 4
No 128
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=87.38 E-value=5.8 Score=31.94 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=45.3
Q ss_pred cCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 27 QGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
..++|+|||.++|..... ....+ ...+.++.|+.+...... ... + +.. ..++....-.+|+||.|
T Consensus 90 ~~~~d~viiDtpp~~~~~-~~~~l---------~~aD~vliv~~~~~~~~~--~~~-~-~~~-~l~~~~~~~~vV~N~~~ 154 (179)
T cd03110 90 AEGAELIIIDGPPGIGCP-VIASL---------TGADAALLVTEPTPSGLH--DLE-R-AVE-LVRHFGIPVGVVINKYD 154 (179)
T ss_pred hcCCCEEEEECcCCCcHH-HHHHH---------HcCCEEEEEecCCcccHH--HHH-H-HHH-HHHHcCCCEEEEEeCCC
Confidence 368999999999665542 22222 124567888888764221 110 0 101 12222323368999999
Q ss_pred CCChhHHHHHHHHHHHh
Q 023301 107 LVTETELGSLTERIKHI 123 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~ 123 (284)
..+. ..+.+++.+++.
T Consensus 155 ~~~~-~~~~~~~~~~~~ 170 (179)
T cd03110 155 LNDE-IAEEIEDYCEEE 170 (179)
T ss_pred CCcc-hHHHHHHHHHHc
Confidence 7543 334566666654
No 129
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=87.24 E-value=2.5 Score=34.29 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=37.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHH-HH-HhhcCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAV-EQ-VAYADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~-~Q-i~~Ad~ivlnK~D~ 107 (284)
....+++++|......+.... + -..+.+|.|+|+...... .... ..+...+. .. -...=+||+||+|+
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~-----~---~~ad~ii~vvD~~~~~~~-~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDY-----F---PEVNGIVYLVDAYDKERF-AESK-RELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHH-----h---CCCCEEEEEEECCcHHHH-HHHH-HHHHHHHcChhhcCCCEEEEEeCccc
Confidence 455778999976554433321 1 256889999999774321 1110 01101110 11 12345788899998
Q ss_pred C
Q 023301 108 V 108 (284)
Q Consensus 108 ~ 108 (284)
.
T Consensus 131 ~ 131 (184)
T smart00178 131 P 131 (184)
T ss_pred c
Confidence 4
No 130
>COG1161 Predicted GTPases [General function prediction only]
Probab=87.19 E-value=1.5 Score=39.40 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=42.9
Q ss_pred eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceee
Q 023301 60 VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKL 131 (284)
Q Consensus 60 ~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~ 131 (284)
-..+.|+-|+|++.+...... .+ . .-.-....++|+||+|+++........+.....++...+..
T Consensus 33 ~~~d~vvevvDar~P~~s~~~----~l-~--~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v 97 (322)
T COG1161 33 KSVDVVVEVVDARDPLGTRNP----EL-E--RIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFV 97 (322)
T ss_pred ccCCEEEEEEeccccccccCc----cH-H--HHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEE
Confidence 357779999999987654221 11 1 11112233889999999999888888777777665444544
No 131
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=87.15 E-value=6.7 Score=30.54 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=51.1
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~~ 108 (284)
..+++++|.-+...+..... -..+.++.|+|+.+... +.... .+. ..+..+. ...=+|++||+|+.
T Consensus 52 ~~i~Dt~G~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~s-~~~~~-~~~-~~~~~~~~~~~~piiiv~NK~Dl~ 120 (164)
T cd04145 52 LDILDTAGQEEFSAMREQYM--------RTGEGFLLVFSVTDRGS-FEEVD-KFH-TQILRVKDRDEFPMILVGNKADLE 120 (164)
T ss_pred EEEEECCCCcchhHHHHHHH--------hhCCEEEEEEECCCHHH-HHHHH-HHH-HHHHHHhCCCCCCEEEEeeCcccc
Confidence 45679999877666544322 13567899999987443 22210 011 1112211 12336788999986
Q ss_pred ChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 109 TETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 109 ~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+... .+...+..+.. ..++++++. .......++
T Consensus 121 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~ 156 (164)
T cd04145 121 HQRKVSREEGQELARKL--KIPYIETSAKDRLNVDKAF 156 (164)
T ss_pred ccceecHHHHHHHHHHc--CCcEEEeeCCCCCCHHHHH
Confidence 5322 23344444433 246666553 233444443
No 132
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=87.03 E-value=2.6 Score=33.54 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=39.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH-H-HhhcCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE-Q-VAYADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~-Q-i~~Ad~ivlnK~D~ 107 (284)
....+++++|-.....+... .+ -..+.+|.|+|+..... +.+.. ..+...... + -...=+||+||+|+
T Consensus 43 ~~~~i~D~~G~~~~~~~~~~-----~~---~~a~~ii~V~D~s~~~s-~~~~~-~~l~~l~~~~~~~~~piliv~NK~Dl 112 (167)
T cd04161 43 YEVCIFDLGGGANFRGIWVN-----YY---AEAHGLVFVVDSSDDDR-VQEVK-EILRELLQHPRVSGKPILVLANKQDK 112 (167)
T ss_pred EEEEEEECCCcHHHHHHHHH-----HH---cCCCEEEEEEECCchhH-HHHHH-HHHHHHHcCccccCCcEEEEEeCCCC
Confidence 44568899997554443221 11 24568999999987532 22110 001000000 1 12234788899998
Q ss_pred CChhHHHHH
Q 023301 108 VTETELGSL 116 (284)
Q Consensus 108 ~~~~~~~~~ 116 (284)
.+......+
T Consensus 113 ~~~~~~~~i 121 (167)
T cd04161 113 KNALLGADV 121 (167)
T ss_pred cCCCCHHHH
Confidence 654333333
No 133
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=86.98 E-value=14 Score=31.93 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHH---hcc-cccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH
Q 023301 18 MLLQLAKKKQGQFDHIVIETTGLAKPAPVIET---FCT-DELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ 93 (284)
Q Consensus 18 ~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~---l~~-~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q 93 (284)
.+.++++ ..++|+|||.|+-.++...++.. +.. ...+. .-....++.|+.+...... +. ....+.
T Consensus 115 ~~~~~l~--~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~-d~~~~~~vlV~~p~~~~~~--e~------~r~~~~ 183 (254)
T cd00550 115 EFSRYID--EAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILS-DPERTSFRLVCIPEKMSLY--ET------ERAIQE 183 (254)
T ss_pred HHHHHHh--cCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhc-CCcceEEEEEeCCChhHHH--HH------HHHHHH
Confidence 3445555 56899999999987665433321 000 00111 1123467888888765432 11 122344
Q ss_pred Hhhc----CEEEEccCCCC
Q 023301 94 VAYA----DRIILNKIDLV 108 (284)
Q Consensus 94 i~~A----d~ivlnK~D~~ 108 (284)
+... .-+|+||....
T Consensus 184 L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 184 LAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred HHHCCCCCCEEEEecCccc
Confidence 4433 35999998653
No 134
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=86.70 E-value=5.3 Score=30.54 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=46.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~ 107 (284)
.+..+++++|......+...+. -..+.+|.|+|+..... +.... .++ ..+...- ...=+|++||+|+
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~~-~~~~~-~~~-~~~~~~~~~~~p~ivv~nK~D~ 117 (159)
T cd00154 49 VKLQIWDTAGQERFRSITPSYY--------RGAHGAILVYDITNRES-FENLD-KWL-KELKEYAPENIPIILVGNKIDL 117 (159)
T ss_pred EEEEEEecCChHHHHHHHHHHh--------cCCCEEEEEEECCCHHH-HHHHH-HHH-HHHHHhCCCCCcEEEEEEcccc
Confidence 3455678888754444333221 13688999999987432 22210 111 1111111 1344778899999
Q ss_pred CCh--hHHHHHHHHHHHhCCCCceeeec
Q 023301 108 VTE--TELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 108 ~~~--~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
.++ ...+.+++..+. ...+++.++
T Consensus 118 ~~~~~~~~~~~~~~~~~--~~~~~~~~s 143 (159)
T cd00154 118 EDQRQVSTEEAQQFAKE--NGLLFFETS 143 (159)
T ss_pred cccccccHHHHHHHHHH--cCCeEEEEe
Confidence 622 223444444443 235666554
No 135
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=86.32 E-value=2.3 Score=39.51 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=48.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
+..+.||+|+|..+. ..... ...-..+.++.|||+..-... . .+.. ..+...+.... +|++||+|+
T Consensus 79 ~~~~~liDtPGh~~f---~~~~~-----~~~~~aD~allVVda~~G~~~--q--t~~~-~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 79 KRKFIVADTPGHEQY---TRNMA-----TGASTADLAVLLVDARKGVLE--Q--TRRH-SYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred CeEEEEEeCCCHHHH---HHHHH-----HHHhhCCEEEEEEECCCCCcc--c--cHHH-HHHHHHcCCCcEEEEEEeccc
Confidence 346789999995442 22211 122367789999999753221 0 1110 11233434444 458999999
Q ss_pred CC--hhHHHHHHHHHH----HhC-CCCceeeec
Q 023301 108 VT--ETELGSLTERIK----HIN-AMAPVKLAK 133 (284)
Q Consensus 108 ~~--~~~~~~~~~~l~----~~n-p~a~i~~~~ 133 (284)
++ .+.++.+++.++ ... ..++++..+
T Consensus 146 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiS 178 (406)
T TIGR02034 146 VDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLS 178 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCccEEEee
Confidence 75 333444444443 322 234566554
No 136
>PRK00098 GTPase RsgA; Reviewed
Probab=85.89 E-value=1.5 Score=38.87 Aligned_cols=79 Identities=23% Similarity=0.212 Sum_probs=38.7
Q ss_pred eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC-hhHHHHHHHHHHHhCCCCceeeecc-CCC
Q 023301 60 VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT-ETELGSLTERIKHINAMAPVKLAKY-GSV 137 (284)
Q Consensus 60 ~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~-~~~~~~~~~~l~~~np~a~i~~~~~-g~v 137 (284)
-.++.++.|+|+...... .+..++++. . ..+-...=+||+||+|+.+ .+......+..+.. ..+++.++. ...
T Consensus 79 aniD~vllV~d~~~p~~~-~~~idr~L~-~-~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~--g~~v~~vSA~~g~ 153 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFS-TDLLDRFLV-L-AEANGIKPIIVLNKIDLLDDLEEARELLALYRAI--GYDVLELSAKEGE 153 (298)
T ss_pred ecCCEEEEEEECCCCCCC-HHHHHHHHH-H-HHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC--CCeEEEEeCCCCc
Confidence 478889999999653110 000011111 1 1222234568899999973 33333333444333 346665543 233
Q ss_pred Chhhhh
Q 023301 138 DMDFVL 143 (284)
Q Consensus 138 ~~~~l~ 143 (284)
..+.|+
T Consensus 154 gi~~L~ 159 (298)
T PRK00098 154 GLDELK 159 (298)
T ss_pred cHHHHH
Confidence 444444
No 137
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=85.89 E-value=3.9 Score=32.52 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=42.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH--Hh-hcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ--VA-YADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q--i~-~Ad~ivlnK~D 106 (284)
....+++++|............ ...+.+|.|+|..+.... .+.. .++ ..+.++ +. ..=+||.||+|
T Consensus 43 ~~i~l~Dt~G~~~~~~~~~~~~--------~~ad~ii~V~D~s~~~s~-~~~~-~~~-~~~~~~~~~~~~piilv~NK~D 111 (169)
T cd04158 43 LKFTIWDVGGKHKLRPLWKHYY--------LNTQAVVFVVDSSHRDRV-SEAH-SEL-AKLLTEKELRDALLLIFANKQD 111 (169)
T ss_pred EEEEEEECCCChhcchHHHHHh--------ccCCEEEEEEeCCcHHHH-HHHH-HHH-HHHhcChhhCCCCEEEEEeCcC
Confidence 4456789999866544333221 235789999999774322 2210 111 111222 22 23356779999
Q ss_pred CCChhHHHHHHHHH
Q 023301 107 LVTETELGSLTERI 120 (284)
Q Consensus 107 ~~~~~~~~~~~~~l 120 (284)
+...-..+.+++.+
T Consensus 112 l~~~~~~~~~~~~~ 125 (169)
T cd04158 112 VAGALSVEEMTELL 125 (169)
T ss_pred cccCCCHHHHHHHh
Confidence 86433344444444
No 138
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=85.83 E-value=3.3 Score=38.73 Aligned_cols=94 Identities=15% Similarity=0.293 Sum_probs=48.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchH-HHHHHHhhcCE-EEEccCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVN-EAVEQVAYADR-IILNKID 106 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~-~~~~Qi~~Ad~-ivlnK~D 106 (284)
+....|++++|-.+ ..... +...-..+.++.|+|+..-.... .+..... .+..++....+ |++||+|
T Consensus 84 ~~~i~iiDtpGh~~---f~~~~-----~~~~~~aD~~ilVvDa~~~~~~~---~~~t~~~~~~~~~~~~~~iIVviNK~D 152 (426)
T TIGR00483 84 KYEVTIVDCPGHRD---FIKNM-----ITGASQADAAVLVVAVGDGEFEV---QPQTREHAFLARTLGINQLIVAINKMD 152 (426)
T ss_pred CeEEEEEECCCHHH---HHHHH-----HhhhhhCCEEEEEEECCCCCccc---CCchHHHHHHHHHcCCCeEEEEEEChh
Confidence 45678999999432 22221 11234578899999998742110 0111101 12233333334 5789999
Q ss_pred CCC--hhHHH----HHHHHHHHhC---CCCceeeec
Q 023301 107 LVT--ETELG----SLTERIKHIN---AMAPVKLAK 133 (284)
Q Consensus 107 ~~~--~~~~~----~~~~~l~~~n---p~a~i~~~~ 133 (284)
+.+ ++.++ +++++++... ...+++.++
T Consensus 153 l~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iS 188 (426)
T TIGR00483 153 SVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPIS 188 (426)
T ss_pred ccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEee
Confidence 974 43343 3344444432 135666654
No 139
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=85.39 E-value=1.4 Score=36.26 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=41.5
Q ss_pred CCCEEEEecCCCCCcH----HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh--------h
Q 023301 29 QFDHIVIETTGLAKPA----PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA--------Y 96 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~----~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~--------~ 96 (284)
.....||+|+|+.++. .+...+.. -.....-.++.++.|+|+.++...- . .+.+++. .
T Consensus 48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~-~~~~~~~g~~~illVi~~~~~t~~d-----~----~~l~~l~~~fg~~~~~ 117 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVSPEQLSKEIVR-CLSLSAPGPHAFLLVVPLGRFTEEE-----E----QAVETLQELFGEKVLD 117 (196)
T ss_pred CeEEEEEECcCCCCccCChHHHHHHHHH-HHHhcCCCCEEEEEEEECCCcCHHH-----H----HHHHHHHHHhChHhHh
Confidence 3467899999999864 23322211 0011122466799999998843221 1 1122232 2
Q ss_pred cCEEEEccCCCCChhH
Q 023301 97 ADRIILNKIDLVTETE 112 (284)
Q Consensus 97 Ad~ivlnK~D~~~~~~ 112 (284)
--+||+||.|...++.
T Consensus 118 ~~ivv~T~~d~l~~~~ 133 (196)
T cd01852 118 HTIVLFTRGDDLEGGT 133 (196)
T ss_pred cEEEEEECccccCCCc
Confidence 3367889999876543
No 140
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=85.37 E-value=7.2 Score=30.61 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=44.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D 106 (284)
....+++++|......+...+ + -..+.++.|+|+.+.... ... ..++ ..+ .+.. ..=++|.||+|
T Consensus 52 ~~l~i~D~~G~~~~~~~~~~~-----~---~~~d~~llv~d~~~~~s~-~~~-~~~~-~~i-~~~~~~~~p~ivv~nK~D 119 (165)
T cd01864 52 VKLQIWDTAGQERFRTITQSY-----Y---RSANGAIIAYDITRRSSF-ESV-PHWI-EEV-EKYGASNVVLLLIGNKCD 119 (165)
T ss_pred EEEEEEECCChHHHHHHHHHH-----h---ccCCEEEEEEECcCHHHH-HhH-HHHH-HHH-HHhCCCCCcEEEEEECcc
Confidence 355777888853322222111 1 135889999999885432 111 0111 111 1211 12367889999
Q ss_pred CCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 107 LVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 107 ~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+....+ .+...+..+... ...+++++
T Consensus 120 l~~~~~~~~~~~~~~~~~~~-~~~~~e~S 147 (165)
T cd01864 120 LEEQREVLFEEACTLAEKNG-MLAVLETS 147 (165)
T ss_pred cccccccCHHHHHHHHHHcC-CcEEEEEE
Confidence 965432 233444444322 23455554
No 141
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=85.33 E-value=4.3 Score=31.90 Aligned_cols=98 Identities=16% Similarity=0.273 Sum_probs=48.1
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~ 108 (284)
.-+++++|.-....+..... -..+.+|.|+|+.+.... .+.. .++ .. ..+.. ..-++|.||+|+.
T Consensus 53 ~~i~D~~G~~~~~~~~~~~~--------~~~~~ii~v~d~~~~~s~-~~l~-~~~-~~-~~~~~~~~~~~iiv~nK~Dl~ 120 (166)
T cd01869 53 LQIWDTAGQERFRTITSSYY--------RGAHGIIIVYDVTDQESF-NNVK-QWL-QE-IDRYASENVNKLLVGNKCDLT 120 (166)
T ss_pred EEEEECCCcHhHHHHHHHHh--------CcCCEEEEEEECcCHHHH-HhHH-HHH-HH-HHHhCCCCCcEEEEEEChhcc
Confidence 34567888554433332221 145789999999875432 2110 011 11 11211 2447888999986
Q ss_pred ChhHH--HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 109 TETEL--GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 109 ~~~~~--~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
....+ +......+.. ..++++++. .......++
T Consensus 121 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 121 DKRVVDYSEAQEFADEL--GIPFLETSAKNATNVEQAF 156 (166)
T ss_pred cccCCCHHHHHHHHHHc--CCeEEEEECCCCcCHHHHH
Confidence 54322 3333433332 356776653 223444443
No 142
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=85.33 E-value=3 Score=41.59 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=47.6
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+....+|.|+|..+....... . .-..+.++.|||+..-...- ...+.. ...+....-+|++||+|+.
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~-----~---l~~~D~~ilVvda~~g~~~~----~~~~~~-~~~~~~~p~ivviNK~D~~ 140 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVER-----S---LRVLDGAVAVLDAVGGVQPQ----SETVWR-QANRYEVPRIAFVNKMDKT 140 (689)
T ss_pred CeEEEEEECCCCcchhHHHHH-----H---HHHhCEEEEEEeCCCCCChh----HHHHHH-HHHHcCCCEEEEEECCCCC
Confidence 456799999999875432211 1 12457899999997632210 011111 1233345678999999997
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
..+ ...+.+.++..
T Consensus 141 ~~~-~~~~~~~i~~~ 154 (689)
T TIGR00484 141 GAN-FLRVVNQIKQR 154 (689)
T ss_pred CCC-HHHHHHHHHHH
Confidence 643 44555555544
No 143
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=85.26 E-value=4.5 Score=31.86 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=35.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH-HHh-hcCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE-QVA-YADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~-Qi~-~Ad~ivlnK~D~ 107 (284)
....+.+++|......+.... .-..+.+|.|+|+.+... +.+.. ..+...+.. ... ..=+|+.||+|+
T Consensus 44 ~~~~l~D~~G~~~~~~~~~~~--------~~~ad~~i~v~D~~~~~s-~~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl 113 (159)
T cd04150 44 ISFTVWDVGGQDKIRPLWRHY--------FQNTQGLIFVVDSNDRER-IGEAR-EELQRMLNEDELRDAVLLVFANKQDL 113 (159)
T ss_pred EEEEEEECCCCHhHHHHHHHH--------hcCCCEEEEEEeCCCHHH-HHHHH-HHHHHHHhcHHhcCCCEEEEEECCCC
Confidence 345667888875443332221 124578999999987432 22210 011111111 111 223677799998
Q ss_pred CCh
Q 023301 108 VTE 110 (284)
Q Consensus 108 ~~~ 110 (284)
.+.
T Consensus 114 ~~~ 116 (159)
T cd04150 114 PNA 116 (159)
T ss_pred CCC
Confidence 643
No 144
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=85.21 E-value=9.5 Score=31.31 Aligned_cols=99 Identities=13% Similarity=0.167 Sum_probs=49.8
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCCh
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVTE 110 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~~ 110 (284)
..|++++|-.....+.... +. ..++++.|+|+.+... +.+. ..++ ..+..+.. ..-+||.||+|+.+.
T Consensus 57 l~l~D~~G~~~~~~~~~~~-----~~---~a~~iilv~D~~~~~s-~~~~-~~~~-~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 57 LQIWDTAGQERFRTITSTY-----YR---GTHGVIVVYDVTNGES-FVNV-KRWL-QEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred EEEEeCCCchhHHHHHHHH-----hC---CCcEEEEEEECCCHHH-HHHH-HHHH-HHHHHhCCCCCEEEEEECcccccc
Confidence 4566888865444333221 11 2457899999977543 2221 0111 11112111 234788899999653
Q ss_pred hH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 111 TE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 111 ~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.. .+...+..+..+ .++++++. .......++
T Consensus 126 ~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 126 KVVETEDAYKFAGQMG--ISLFETSAKENINVEEMF 159 (199)
T ss_pred cccCHHHHHHHHHHcC--CEEEEEECCCCcCHHHHH
Confidence 22 233444444443 66777653 334555554
No 145
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=85.11 E-value=2.8 Score=39.46 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=50.8
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHH--hhhhcCCccchH-HHHHHHhhcCE-EEEcc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQ--HLNEVKPRFVVN-EAVEQVAYADR-IILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~--~l~~~~~~~~~~-~~~~Qi~~Ad~-ivlnK 104 (284)
+..+.||+++|-.+. +... .......+.++.|||+..-.. .+.. ....... .+...+....+ |++||
T Consensus 84 ~~~i~lIDtPGh~~f---~~~~-----~~g~~~aD~ailVVda~~G~~e~~~~~-~~qT~eh~~~~~~~gi~~iiv~vNK 154 (446)
T PTZ00141 84 KYYFTIIDAPGHRDF---IKNM-----ITGTSQADVAILVVASTAGEFEAGISK-DGQTREHALLAFTLGVKQMIVCINK 154 (446)
T ss_pred CeEEEEEECCChHHH---HHHH-----HHhhhhcCEEEEEEEcCCCceecccCC-CccHHHHHHHHHHcCCCeEEEEEEc
Confidence 346789999995442 2221 112346778899999976321 1100 0000001 12333444554 79999
Q ss_pred CCC--C--ChhHHHHHHHHHHHh------CC-CCceeeec
Q 023301 105 IDL--V--TETELGSLTERIKHI------NA-MAPVKLAK 133 (284)
Q Consensus 105 ~D~--~--~~~~~~~~~~~l~~~------np-~a~i~~~~ 133 (284)
+|. + +++.++.+.+.++.+ ++ ..+++..+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiS 194 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPIS 194 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEee
Confidence 994 3 345566666666543 32 36667655
No 146
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=85.05 E-value=8.5 Score=29.91 Aligned_cols=91 Identities=13% Similarity=0.106 Sum_probs=46.5
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D 106 (284)
.+..+++++|......+.... + -..+.++.|+|....... .... .++ ..+... -..+-+||.||+|
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~i~~~~~~~~~~~~iv~nK~D 117 (161)
T cd01863 49 VKLAIWDTAGQERFRTLTSSY-----Y---RGAQGVILVYDVTRRDTF-TNLE-TWL-NELETYSTNNDIVKMLVGNKID 117 (161)
T ss_pred EEEEEEECCCchhhhhhhHHH-----h---CCCCEEEEEEECCCHHHH-HhHH-HHH-HHHHHhCCCCCCcEEEEEECCc
Confidence 345677888865433322221 1 135789999998764432 2110 010 111111 1233588899999
Q ss_pred CCChh-HHHHHHHHHHHhCCCCceeeec
Q 023301 107 LVTET-ELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 107 ~~~~~-~~~~~~~~l~~~np~a~i~~~~ 133 (284)
+.... ..+...+..+.. .+++++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~--~~~~~~~S 143 (161)
T cd01863 118 KENREVTREEGLKFARKH--NMLFIETS 143 (161)
T ss_pred ccccccCHHHHHHHHHHc--CCEEEEEe
Confidence 96222 234444555443 45666654
No 147
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=84.95 E-value=4.1 Score=32.51 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=40.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHH-HHHh-hcCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAV-EQVA-YADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~-~Qi~-~Ad~ivlnK~D~ 107 (284)
....+.+++|......+.... + -..+.+|.|+|+.+.... .+.. ..+...+. .+.. ..=+||.||+|+
T Consensus 53 ~~~~l~Dt~G~~~~~~~~~~~-----~---~~a~~ii~v~D~t~~~s~-~~~~-~~~~~~~~~~~~~~~piilv~NK~Dl 122 (168)
T cd04149 53 VKFNVWDVGGQDKIRPLWRHY-----Y---TGTQGLIFVVDSADRDRI-DEAR-QELHRIINDREMRDALLLVFANKQDL 122 (168)
T ss_pred EEEEEEECCCCHHHHHHHHHH-----h---ccCCEEEEEEeCCchhhH-HHHH-HHHHHHhcCHhhcCCcEEEEEECcCC
Confidence 345667888876554432221 1 246789999999884321 2110 01111111 1122 234567799998
Q ss_pred CChhHHHHHHHHH
Q 023301 108 VTETELGSLTERI 120 (284)
Q Consensus 108 ~~~~~~~~~~~~l 120 (284)
.+....+++++.+
T Consensus 123 ~~~~~~~~i~~~~ 135 (168)
T cd04149 123 PDAMKPHEIQEKL 135 (168)
T ss_pred ccCCCHHHHHHHc
Confidence 6432334444443
No 148
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=84.81 E-value=5.9 Score=30.79 Aligned_cols=101 Identities=10% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D 106 (284)
..+.+++++|......+..... -..+.++.|+|...-.. +.+.. .+. ..+... ....=+||+||+|
T Consensus 48 ~~~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s-~~~~~-~~~-~~~~~~~~~~~~piiiv~NK~D 116 (164)
T cd04139 48 VQLNILDTAGQEDYAAIRDNYH--------RSGEGFLLVFSITDMES-FTATA-EFR-EQILRVKDDDNVPLLLVGNKCD 116 (164)
T ss_pred EEEEEEECCChhhhhHHHHHHh--------hcCCEEEEEEECCCHHH-HHHHH-HHH-HHHHHhcCCCCCCEEEEEEccc
Confidence 3577889999776655444322 12356778888755321 11110 011 111222 2345589999999
Q ss_pred CCCh--hHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 107 LVTE--TELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~--~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+. .......+..++.+ .++++++. .....+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 117 LEDKRQVSSEEAANLARQWG--VPYVETSAKTRQNVEKAF 154 (164)
T ss_pred cccccccCHHHHHHHHHHhC--CeEEEeeCCCCCCHHHHH
Confidence 9762 22333444444433 56666553 233444444
No 149
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=84.65 E-value=3.9 Score=34.95 Aligned_cols=83 Identities=22% Similarity=0.279 Sum_probs=47.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+....+++|+|..+....... . .-..+.++.|+|+..-..... +.+.. ........-+|++||+|+.
T Consensus 63 ~~~i~liDTPG~~~f~~~~~~-----~---l~~aD~~IlVvd~~~g~~~~~----~~~~~-~~~~~~~P~iivvNK~D~~ 129 (237)
T cd04168 63 DTKVNLIDTPGHMDFIAEVER-----S---LSVLDGAILVISAVEGVQAQT----RILWR-LLRKLNIPTIIFVNKIDRA 129 (237)
T ss_pred CEEEEEEeCCCccchHHHHHH-----H---HHHhCeEEEEEeCCCCCCHHH----HHHHH-HHHHcCCCEEEEEECcccc
Confidence 456788999999875432221 1 124578899999976422100 01111 1122234558999999987
Q ss_pred ChhHHHHHHHHHHHhCC
Q 023301 109 TETELGSLTERIKHINA 125 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~np 125 (284)
.. ...++.+.+++...
T Consensus 130 ~a-~~~~~~~~i~~~~~ 145 (237)
T cd04168 130 GA-DLEKVYQEIKEKLS 145 (237)
T ss_pred CC-CHHHHHHHHHHHHC
Confidence 53 33555555665443
No 150
>PRK11058 GTPase HflX; Provisional
Probab=84.61 E-value=1.9 Score=40.42 Aligned_cols=74 Identities=18% Similarity=0.422 Sum_probs=44.7
Q ss_pred CEEEEecCCCC-C-cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccC
Q 023301 31 DHIVIETTGLA-K-PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKI 105 (284)
Q Consensus 31 d~iiIE~sG~a-~-p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~ 105 (284)
..++++|.|.- + |..+++.+.. .+...-..+.++.|+|+.+.... .+. .. ...+..++. ..-++|+||+
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~--tl~~~~~ADlIL~VvDaS~~~~~-e~l--~~-v~~iL~el~~~~~pvIiV~NKi 319 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKA--TLQETRQATLLLHVVDAADVRVQ-ENI--EA-VNTVLEEIDAHEIPTLLVMNKI 319 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHH--HHHHhhcCCEEEEEEeCCCccHH-HHH--HH-HHHHHHHhccCCCCEEEEEEcc
Confidence 56899999983 3 7777766542 23344567889999999764211 110 00 011234443 3348899999
Q ss_pred CCCCh
Q 023301 106 DLVTE 110 (284)
Q Consensus 106 D~~~~ 110 (284)
|+.+.
T Consensus 320 DL~~~ 324 (426)
T PRK11058 320 DMLDD 324 (426)
T ss_pred cCCCc
Confidence 99753
No 151
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=84.60 E-value=3 Score=36.20 Aligned_cols=81 Identities=14% Similarity=0.164 Sum_probs=46.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
..+..+|.|+|..+........ .-..+.++.|+|+........ ..+. ....+....-++++||+|+.
T Consensus 63 ~~~i~liDtPG~~~f~~~~~~~--------l~~aD~~i~Vvd~~~g~~~~~----~~~~-~~~~~~~~p~iivvNK~D~~ 129 (268)
T cd04170 63 GHKINLIDTPGYADFVGETRAA--------LRAADAALVVVSAQSGVEVGT----EKLW-EFADEAGIPRIIFINKMDRE 129 (268)
T ss_pred CEEEEEEECcCHHHHHHHHHHH--------HHHCCEEEEEEeCCCCCCHHH----HHHH-HHHHHcCCCEEEEEECCccC
Confidence 3467899999986543222111 124677999999987432110 0010 11234455678999999987
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
.. ......+.+++.
T Consensus 130 ~~-~~~~~~~~l~~~ 143 (268)
T cd04170 130 RA-DFDKTLAALQEA 143 (268)
T ss_pred CC-CHHHHHHHHHHH
Confidence 54 345555666654
No 152
>PRK00007 elongation factor G; Reviewed
Probab=83.95 E-value=2.4 Score=42.29 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=47.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+..+.||.|+|..+... +.. ...-.++.+|.|||+..-... ..+.+.. ...+....-++++||+|+.
T Consensus 74 ~~~~~liDTPG~~~f~~--ev~------~al~~~D~~vlVvda~~g~~~----qt~~~~~-~~~~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 74 DHRINIIDTPGHVDFTI--EVE------RSLRVLDGAVAVFDAVGGVEP----QSETVWR-QADKYKVPRIAFVNKMDRT 140 (693)
T ss_pred CeEEEEEeCCCcHHHHH--HHH------HHHHHcCEEEEEEECCCCcch----hhHHHHH-HHHHcCCCEEEEEECCCCC
Confidence 45789999999765321 111 112345789999998764321 1111111 1334445678999999998
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
+.+ ...+.+.+++.
T Consensus 141 ~~~-~~~~~~~i~~~ 154 (693)
T PRK00007 141 GAD-FYRVVEQIKDR 154 (693)
T ss_pred CCC-HHHHHHHHHHH
Confidence 644 44555555543
No 153
>COG1160 Predicted GTPases [General function prediction only]
Probab=83.86 E-value=1.4 Score=41.07 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=49.3
Q ss_pred CCCEEEEecCCCCCc--HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 29 QFDHIVIETTGLAKP--APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p--~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
.....+|.|.|+-+- .++...+.. -.+...-.-+.+++|||+..-.... +..+...+. ...-.=++|+||+|
T Consensus 50 ~~~f~lIDTgGl~~~~~~~l~~~i~~-Qa~~Ai~eADvilfvVD~~~Git~~----D~~ia~~Lr-~~~kpviLvvNK~D 123 (444)
T COG1160 50 GREFILIDTGGLDDGDEDELQELIRE-QALIAIEEADVILFVVDGREGITPA----DEEIAKILR-RSKKPVILVVNKID 123 (444)
T ss_pred CceEEEEECCCCCcCCchHHHHHHHH-HHHHHHHhCCEEEEEEeCCCCCCHH----HHHHHHHHH-hcCCCEEEEEEccc
Confidence 456899999999953 355554432 2344556788899999998844321 122323333 55566789999999
Q ss_pred CCCh
Q 023301 107 LVTE 110 (284)
Q Consensus 107 ~~~~ 110 (284)
....
T Consensus 124 ~~~~ 127 (444)
T COG1160 124 NLKA 127 (444)
T ss_pred Cchh
Confidence 8643
No 154
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=83.80 E-value=5.1 Score=37.63 Aligned_cols=93 Identities=26% Similarity=0.322 Sum_probs=52.6
Q ss_pred CCCEEEEecCCCCCc-HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCC
Q 023301 29 QFDHIVIETTGLAKP-APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p-~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~ 107 (284)
..|+|||+|.|.... ..+++.|. .+.....-+.++.|+|+..-...+.. ...+.+.+ ..+-||+||.|.
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~---~l~~~~~pdevlLVvda~~gq~av~~------a~~F~~~l-~i~gvIlTKlD~ 244 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMK---EIKEAVKPDEVLLVIDATIGQQAKNQ------AKAFHEAV-GIGGIIITKLDG 244 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHH---HHHHHhcccceeEEEeccccHHHHHH------HHHHHhcC-CCCEEEEecccC
Confidence 349999999997763 44444442 22233455678999999774322211 01111222 357899999997
Q ss_pred CChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 108 VTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 108 ~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
.. ..-.+....... ..||.....|
T Consensus 245 ~a--~~G~~ls~~~~~--~~Pi~fig~G 268 (437)
T PRK00771 245 TA--KGGGALSAVAET--GAPIKFIGTG 268 (437)
T ss_pred CC--cccHHHHHHHHH--CcCEEEEecC
Confidence 43 233344444333 3566655555
No 155
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=83.75 E-value=4.1 Score=32.01 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=44.2
Q ss_pred eeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC-ChhHHHHHHHHHHHhCCCCceeeec
Q 023301 59 YVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV-TETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 59 ~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~-~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
..+.+.|+.|.|+......+. |.+ ..-....-+=||||+|+. +++++++.+++++...-. +|+.++
T Consensus 61 a~dad~V~ll~dat~~~~~~p---P~f-----a~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~-~if~vS 127 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFP---PGF-----ASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK-EIFEVS 127 (143)
T ss_pred HhhCCEEEEEecCCCCCccCC---chh-----hcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCC-CeEEEE
Confidence 457888999999988543321 111 122333455688999998 678899999999877543 455554
No 156
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.72 E-value=2.1 Score=38.97 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=49.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccc---e--eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh---cCEEEE
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQ---Y--VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY---ADRIIL 102 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~---~--~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~---Ad~ivl 102 (284)
.+-|||++|+-.-..- .+...-.+.. . -+++-++.+.||..+.- ++++ ..+.+|++. --.||+
T Consensus 148 ~vtiVdtPGILsgeKQ--risR~ydF~~v~~WFaeR~D~IiLlfD~hKLDI-----sdEf--~~vi~aLkG~EdkiRVVL 218 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQ--RISRGYDFTGVLEWFAERVDRIILLFDAHKLDI-----SDEF--KRVIDALKGHEDKIRVVL 218 (532)
T ss_pred heeeeccCcccccchh--cccccCChHHHHHHHHHhccEEEEEechhhccc-----cHHH--HHHHHHhhCCcceeEEEe
Confidence 3568999999775431 1111011111 1 15677999999987532 1111 334666654 347999
Q ss_pred ccCCCCChhHHHHHHHHH
Q 023301 103 NKIDLVTETELGSLTERI 120 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l 120 (284)
||+|.++..++-++.-.+
T Consensus 219 NKADqVdtqqLmRVyGAL 236 (532)
T KOG1954|consen 219 NKADQVDTQQLMRVYGAL 236 (532)
T ss_pred ccccccCHHHHHHHHHHH
Confidence 999999999987776554
No 157
>PTZ00099 rab6; Provisional
Probab=83.42 E-value=3.9 Score=33.18 Aligned_cols=102 Identities=12% Similarity=0.206 Sum_probs=53.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC---EEEEcc
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD---RIILNK 104 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad---~ivlnK 104 (284)
...+..|.+++|...+..+.... + -..+.+|.|+|..+... +.+. ..++ ..+. +....+ +||.||
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~-----~---~~ad~~ilv~D~t~~~s-f~~~-~~w~-~~i~-~~~~~~~piilVgNK 94 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSY-----I---RDSAAAIVVYDITNRQS-FENT-TKWI-QDIL-NERGKDVIIALVGNK 94 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHH-----h---CCCcEEEEEEECCCHHH-HHHH-HHHH-HHHH-HhcCCCCeEEEEEEC
Confidence 35677889999987766543322 2 24678899999887432 1211 1111 1111 111223 578899
Q ss_pred CCCCChh--HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTET--ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~--~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+.. ..+......+..+ ..+++++. .......++
T Consensus 95 ~DL~~~~~v~~~e~~~~~~~~~--~~~~e~SAk~g~nV~~lf 134 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQKAQEYN--TMFHETSAKAGHNIKVLF 134 (176)
T ss_pred cccccccCCCHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 9986422 1223334444332 45666553 334555554
No 158
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=83.37 E-value=3 Score=37.36 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=49.4
Q ss_pred eeeceEEEEEcccchHHhhhhcCCccchHHH-HHHHhhcCEEEE-ccCCCCChhH----HHHHHHHHHHhC-CCCceeee
Q 023301 60 VKLDGVITLVDSKHAMQHLNEVKPRFVVNEA-VEQVAYADRIIL-NKIDLVTETE----LGSLTERIKHIN-AMAPVKLA 132 (284)
Q Consensus 60 ~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~-~~Qi~~Ad~ivl-nK~D~~~~~~----~~~~~~~l~~~n-p~a~i~~~ 132 (284)
.-.|+.+.||+|....-+ |.....++ .+=+..-++|++ ||+|+++.++ -++++++++.-. .+|+|+..
T Consensus 108 AlMDgAlLvIaANEpcPQ-----PQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPi 182 (415)
T COG5257 108 ALMDGALLVIAANEPCPQ-----PQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPI 182 (415)
T ss_pred hhhcceEEEEecCCCCCC-----CchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeee
Confidence 446777888888664432 22222333 344444555554 9999999766 466777777644 57899976
Q ss_pred cc-CCCChhhhh
Q 023301 133 KY-GSVDMDFVL 143 (284)
Q Consensus 133 ~~-g~v~~~~l~ 143 (284)
+. -+++.+.|+
T Consensus 183 SA~~~~NIDal~ 194 (415)
T COG5257 183 SAQHKANIDALI 194 (415)
T ss_pred hhhhccCHHHHH
Confidence 53 466666665
No 159
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=83.27 E-value=5.5 Score=34.95 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=37.2
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCCCChhHHHHHHHHHHHhCC--CCceee
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDLVTETELGSLTERIKHINA--MAPVKL 131 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np--~a~i~~ 131 (284)
.++.+++++|+..-. +... . -.+..++ ...=++|+||+|+.+.+++...++.+++.-. ..+++.
T Consensus 114 rvh~~ly~i~~~~~~--l~~~---D--~~~lk~l~~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~ 181 (276)
T cd01850 114 RVHACLYFIEPTGHG--LKPL---D--IEFMKRLSKRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYK 181 (276)
T ss_pred ceEEEEEEEeCCCCC--CCHH---H--HHHHHHHhccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceEC
Confidence 577899999987511 1000 0 1122333 2344788899999988777666666654332 355554
No 160
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=83.24 E-value=5.6 Score=30.91 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=40.2
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH--HH---hhcCEEEEccCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE--QV---AYADRIILNKID 106 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~--Qi---~~Ad~ivlnK~D 106 (284)
..+++++|......+.... + -..+.+|.|+|+...... .... .++ ..+.. .+ ...=+||+||+|
T Consensus 47 ~~l~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~D~~~~~~~-~~~~-~~~-~~~~~~~~~~~~~~p~iiv~NK~D 115 (162)
T cd04157 47 FTAFDMSGQGKYRGLWEHY-----Y---KNIQGIIFVIDSSDRLRL-VVVK-DEL-ELLLNHPDIKHRRVPILFFANKMD 115 (162)
T ss_pred EEEEECCCCHhhHHHHHHH-----H---ccCCEEEEEEeCCcHHHH-HHHH-HHH-HHHHcCcccccCCCCEEEEEeCcc
Confidence 4588999976654433321 1 246789999999875422 1000 001 01111 11 234578889999
Q ss_pred CCChhHHHHHHH
Q 023301 107 LVTETELGSLTE 118 (284)
Q Consensus 107 ~~~~~~~~~~~~ 118 (284)
+.+......+.+
T Consensus 116 l~~~~~~~~~~~ 127 (162)
T cd04157 116 LPDALTAVKITQ 127 (162)
T ss_pred ccCCCCHHHHHH
Confidence 976433333333
No 161
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=83.19 E-value=11 Score=29.35 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=49.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-------hhcCEEEEc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-------AYADRIILN 103 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-------~~Ad~ivln 103 (284)
..-+++++|......+..... -..+.+|.|+|+.+.... ... ..++ ..+.... ...=++|.|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~D~~~~~s~-~~~-~~~~-~~~~~~~~~~~~~~~~piilv~n 118 (168)
T cd04119 50 RVNFFDLSGHPEYLEVRNEFY--------KDTQGVLLVYDVTDRQSF-EAL-DSWL-KEMKQEGGPHGNMENIVVVVCAN 118 (168)
T ss_pred EEEEEECCccHHHHHHHHHHh--------ccCCEEEEEEECCCHHHH-HhH-HHHH-HHHHHhccccccCCCceEEEEEE
Confidence 345778888755444333221 135678999999874321 111 0111 1122221 123477889
Q ss_pred cCCCCChh--HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 104 KIDLVTET--ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 104 K~D~~~~~--~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+|+.+.. ..+..+++.+..+ .++++++. .......++
T Consensus 119 K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 119 KIDLTKHRAVSEDEGRLWAESKG--FKYFETSACTGEGVNEMF 159 (168)
T ss_pred chhcccccccCHHHHHHHHHHcC--CeEEEEECCCCCCHHHHH
Confidence 99997322 2333344444433 56666653 333444443
No 162
>PRK12739 elongation factor G; Reviewed
Probab=83.15 E-value=1.2 Score=44.44 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=46.6
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+..+.||.|+|..+... +. ....-..+.++.|||+..-...- .+.+... ..+....-++++||+|+.
T Consensus 72 ~~~i~liDTPG~~~f~~--e~------~~al~~~D~~ilVvDa~~g~~~q----t~~i~~~-~~~~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 72 GHRINIIDTPGHVDFTI--EV------ERSLRVLDGAVAVFDAVSGVEPQ----SETVWRQ-ADKYGVPRIVFVNKMDRI 138 (691)
T ss_pred CEEEEEEcCCCHHHHHH--HH------HHHHHHhCeEEEEEeCCCCCCHH----HHHHHHH-HHHcCCCEEEEEECCCCC
Confidence 45678999999765221 11 11223457899999997643211 1111111 223334668999999998
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
..+ ...+.+.++..
T Consensus 139 ~~~-~~~~~~~i~~~ 152 (691)
T PRK12739 139 GAD-FFRSVEQIKDR 152 (691)
T ss_pred CCC-HHHHHHHHHHH
Confidence 643 44555555544
No 163
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=83.15 E-value=9.5 Score=30.14 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=48.1
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh------cCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY------ADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~------Ad~ivlnK 104 (284)
...+++++|......+.... + -..+.++.|+|+.+.... .+. ..+..++.. .=+||.||
T Consensus 54 ~~~i~Dt~G~~~~~~~~~~~-----~---~~~d~il~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~pvivv~nK 118 (168)
T cd01866 54 KLQIWDTAGQESFRSITRSY-----Y---RGAAGALLVYDITRRETF-NHL------TSWLEDARQHSNSNMTIMLIGNK 118 (168)
T ss_pred EEEEEECCCcHHHHHHHHHH-----h---ccCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhCCCCCcEEEEEEC
Confidence 44567888854433322211 1 245779999999864322 211 112233321 23777799
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+... .+..+...+.. .+.+++++. .......++
T Consensus 119 ~Dl~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 119 CDLESRREVSYEEGEAFAKEH--GLIFMETSAKTASNVEEAF 158 (168)
T ss_pred cccccccCCCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHH
Confidence 99874322 23344444433 356666543 233444443
No 164
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=83.10 E-value=12 Score=29.57 Aligned_cols=72 Identities=10% Similarity=0.174 Sum_probs=36.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~ 107 (284)
.+..++.++|.......... .+ -..+.++.|+|..+... +.+....+. ..+ .+. ...=+||.||+|+
T Consensus 47 ~~~~i~Dt~G~~~~~~~~~~-----~~---~~ad~~ilv~d~~~~~s-~~~~~~~~~-~~i-~~~~~~~pviiv~nK~Dl 115 (166)
T cd01893 47 VPTTIVDTSSRPQDRANLAA-----EI---RKANVICLVYSVDRPST-LERIRTKWL-PLI-RRLGVKVPIILVGNKSDL 115 (166)
T ss_pred EEEEEEeCCCchhhhHHHhh-----hc---ccCCEEEEEEECCCHHH-HHHHHHHHH-HHH-HHhCCCCCEEEEEEchhc
Confidence 45568888887654332221 11 23556788889876332 111000010 111 111 2234677799999
Q ss_pred CChhH
Q 023301 108 VTETE 112 (284)
Q Consensus 108 ~~~~~ 112 (284)
.+...
T Consensus 116 ~~~~~ 120 (166)
T cd01893 116 RDGSS 120 (166)
T ss_pred ccccc
Confidence 76443
No 165
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=83.05 E-value=3 Score=41.10 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
+..++||.|+|..+. ..... ...-..+.++.|||+...... . .+.. ..+..++.... +|++||+|+
T Consensus 103 ~~~~~liDtPG~~~f---~~~~~-----~~~~~aD~~llVvda~~g~~~--~--t~e~-~~~~~~~~~~~iivvvNK~D~ 169 (632)
T PRK05506 103 KRKFIVADTPGHEQY---TRNMV-----TGASTADLAIILVDARKGVLT--Q--TRRH-SFIASLLGIRHVVLAVNKMDL 169 (632)
T ss_pred CceEEEEECCChHHH---HHHHH-----HHHHhCCEEEEEEECCCCccc--c--CHHH-HHHHHHhCCCeEEEEEEeccc
Confidence 346799999996432 22111 122356778999999653211 0 0100 11233344334 458999999
Q ss_pred CC--hhHHHHHHHHHH----HhC-CCCceeeec
Q 023301 108 VT--ETELGSLTERIK----HIN-AMAPVKLAK 133 (284)
Q Consensus 108 ~~--~~~~~~~~~~l~----~~n-p~a~i~~~~ 133 (284)
++ .+.++.+.+.++ .+. +..+++..+
T Consensus 170 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiS 202 (632)
T PRK05506 170 VDYDQEVFDEIVADYRAFAAKLGLHDVTFIPIS 202 (632)
T ss_pred ccchhHHHHHHHHHHHHHHHHcCCCCccEEEEe
Confidence 84 444454544443 332 335566544
No 166
>PLN03118 Rab family protein; Provisional
Probab=82.73 E-value=8 Score=32.05 Aligned_cols=97 Identities=11% Similarity=0.124 Sum_probs=50.5
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-------hcCEEEEc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-------YADRIILN 103 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-------~Ad~ivln 103 (284)
...|++++|......+.... + -..+.+|.|+|..+.... .+.. .....++. ..-+||.|
T Consensus 63 ~l~l~Dt~G~~~~~~~~~~~-----~---~~~d~~vlv~D~~~~~sf-~~~~-----~~~~~~~~~~~~~~~~~~ilv~N 128 (211)
T PLN03118 63 KLTIWDTAGQERFRTLTSSY-----Y---RNAQGIILVYDVTRRETF-TNLS-----DVWGKEVELYSTNQDCVKMLVGN 128 (211)
T ss_pred EEEEEECCCchhhHHHHHHH-----H---hcCCEEEEEEECCCHHHH-HHHH-----HHHHHHHHHhcCCCCCCEEEEEE
Confidence 45688999976655543332 1 145779999999875432 2110 11111121 23468889
Q ss_pred cCCCCChhHH--HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 104 KIDLVTETEL--GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 104 K~D~~~~~~~--~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+|+.....+ +......+.. ...+++++. .......++
T Consensus 129 K~Dl~~~~~i~~~~~~~~~~~~--~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 129 KVDRESERDVSREEGMALAKEH--GCLFLECSAKTRENVEQCF 169 (211)
T ss_pred CccccccCccCHHHHHHHHHHc--CCEEEEEeCCCCCCHHHHH
Confidence 9998654332 2333333333 355666543 233444444
No 167
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=82.71 E-value=7.7 Score=30.15 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHH-HH-HhhcCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAV-EQ-VAYADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~-~Q-i~~Ad~ivlnK~D~ 107 (284)
....+.+++|......+.... + -..+.+|.|+|+.+... +.... ..+...+. .. -...=+||+||+|+
T Consensus 44 ~~l~i~D~~G~~~~~~~~~~~-----~---~~~~~iv~v~D~~~~~~-~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl 113 (160)
T cd04156 44 LSLTVWDVGGQEKMRTVWKCY-----L---ENTDGLVYVVDSSDEAR-LDESQ-KELKHILKNEHIKGVPVVLLANKQDL 113 (160)
T ss_pred eEEEEEECCCCHhHHHHHHHH-----h---ccCCEEEEEEECCcHHH-HHHHH-HHHHHHHhchhhcCCCEEEEEECccc
Confidence 345667788765433322221 1 23577899999987542 11110 01111111 11 12345788899998
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
..
T Consensus 114 ~~ 115 (160)
T cd04156 114 PG 115 (160)
T ss_pred cc
Confidence 54
No 168
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=82.71 E-value=3.2 Score=33.48 Aligned_cols=58 Identities=26% Similarity=0.269 Sum_probs=29.9
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHH-HHHhh-cCEEEEccCCCCChhHHHHHHHHH
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAV-EQVAY-ADRIILNKIDLVTETELGSLTERI 120 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~-~Qi~~-Ad~ivlnK~D~~~~~~~~~~~~~l 120 (284)
..+++|+|||+..... +.+.. ..+...+. .++.. .=+|++||.|+.+....+.+.+.+
T Consensus 81 ~~~~iIfVvDssd~~~-l~e~~-~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l 140 (175)
T PF00025_consen 81 NADGIIFVVDSSDPER-LQEAK-EELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYL 140 (175)
T ss_dssp TESEEEEEEETTGGGG-HHHHH-HHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHT
T ss_pred ccceeEEEEeccccee-ecccc-cchhhhcchhhcccceEEEEeccccccCcchhhHHHhhh
Confidence 5688999999987432 22211 01111111 12322 335566999986544445555443
No 169
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=82.54 E-value=12 Score=34.57 Aligned_cols=110 Identities=22% Similarity=0.322 Sum_probs=66.0
Q ss_pred chHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHH-HHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHH
Q 023301 13 GDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVI-ETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAV 91 (284)
Q Consensus 13 ~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~-~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~ 91 (284)
-+|..++..+-+ .|.|+|.|.|...-.... ..|. ..+.....+. +..|+++..-...+. +..
T Consensus 270 ~el~~ai~~l~~-----~d~ILVDTaGrs~~D~~~i~el~--~~~~~~~~i~-~~Lvlsat~K~~dlk---------ei~ 332 (407)
T COG1419 270 KELAEAIEALRD-----CDVILVDTAGRSQYDKEKIEELK--ELIDVSHSIE-VYLVLSATTKYEDLK---------EII 332 (407)
T ss_pred HHHHHHHHHhhc-----CCEEEEeCCCCCccCHHHHHHHH--HHHhccccce-EEEEEecCcchHHHH---------HHH
Confidence 468888876654 599999999999843321 1221 2233334444 556777776554443 345
Q ss_pred HHHhhc--CEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhhh
Q 023301 92 EQVAYA--DRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFVL 143 (284)
Q Consensus 92 ~Qi~~A--d~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l~ 143 (284)
.|.+.. +-++++|.|..+. +-.+...+-+- +-+|...++|+-=+++|.
T Consensus 333 ~~f~~~~i~~~I~TKlDET~s--~G~~~s~~~e~--~~PV~YvT~GQ~VPeDI~ 382 (407)
T COG1419 333 KQFSLFPIDGLIFTKLDETTS--LGNLFSLMYET--RLPVSYVTNGQRVPEDIV 382 (407)
T ss_pred HHhccCCcceeEEEcccccCc--hhHHHHHHHHh--CCCeEEEeCCCCCCchhh
Confidence 666655 4589999998652 44444444433 357777778754444443
No 170
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=82.47 E-value=9 Score=32.82 Aligned_cols=87 Identities=23% Similarity=0.374 Sum_probs=50.3
Q ss_pred CCCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecC-CCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhh
Q 023301 2 VNNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETT-GLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNE 80 (284)
Q Consensus 2 L~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~s-G~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~ 80 (284)
-..||.|= + +.|...+.+-+. ..+.|+|+|.|= |+-+... . -.-.+|.+|.|+||..-.-.+..
T Consensus 110 ~GeGC~Cp-~-~allR~~l~~l~--~~~~e~VivDtEAGiEHfgR--------g---~~~~vD~vivVvDpS~~sl~tae 174 (255)
T COG3640 110 GGEGCACP-M-NALLRRLLRHLI--LNRYEVVIVDTEAGIEHFGR--------G---TIEGVDLVIVVVDPSYKSLRTAE 174 (255)
T ss_pred CCCcccch-H-HHHHHHHHHHHh--cccCcEEEEecccchhhhcc--------c---cccCCCEEEEEeCCcHHHHHHHH
Confidence 36799954 3 345554443333 356899999873 4444321 0 11257789999999763322221
Q ss_pred cCCccchHHHHHHHh-hcCEEEEccCCCC
Q 023301 81 VKPRFVVNEAVEQVA-YADRIILNKIDLV 108 (284)
Q Consensus 81 ~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~ 108 (284)
....+.+++. --=.+|+||.|..
T Consensus 175 -----ri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 175 -----RIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred -----HHHHHHHHhCCceEEEEEeeccch
Confidence 1133456666 3446788999964
No 171
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=82.42 E-value=12 Score=34.32 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=55.2
Q ss_pred CCCCEEEEecCCCCCcHHH-HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--------hhcC
Q 023301 28 GQFDHIVIETTGLAKPAPV-IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--------AYAD 98 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i-~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--------~~Ad 98 (284)
.+.|.|+|+|.|....... .+.+. .+.....-..++.|+++..-...+.+. ... .... ..-+
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La---~L~~~~~~~~~lLVLsAts~~~~l~ev-----i~~-f~~~~~~p~~~~~~~~ 284 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIA---MLHGADTPVQRLLLLNATSHGDTLNEV-----VQA-YRSAAGQPKAALPDLA 284 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHH---HHhccCCCCeEEEEecCccChHHHHHH-----HHH-HHHhhcccccccCCCC
Confidence 3579999999999965432 22221 121111222468899998855444321 011 1222 1347
Q ss_pred EEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCC
Q 023301 99 RIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSV 137 (284)
Q Consensus 99 ~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v 137 (284)
-+|++|.|... .+-.+...+... +.+|...+.|+-
T Consensus 285 ~~I~TKlDEt~--~~G~~l~~~~~~--~lPi~yvt~Gq~ 319 (374)
T PRK14722 285 GCILTKLDEAS--NLGGVLDTVIRY--KLPVHYVSTGQK 319 (374)
T ss_pred EEEEeccccCC--CccHHHHHHHHH--CcCeEEEecCCC
Confidence 89999999865 344555555443 467777777743
No 172
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.41 E-value=14 Score=34.64 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=56.6
Q ss_pred cCCCCEEEEecCCCCCc-HHHHHHhccccccccee---eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEE
Q 023301 27 QGQFDHIVIETTGLAKP-APVIETFCTDELVSQYV---KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIIL 102 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p-~~i~~~l~~~~~l~~~~---~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivl 102 (284)
..++|+|||+|+|.... ...++.|.. +...+ .-..++.|+|+..-...+.+. .-.-+--..+-+|+
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~---~~~~~~~~~~~e~~LVLsAt~~~~~~~~~-------~~~f~~~~~~glIl 366 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQS---FYSCFGEKDSVENLLVLSSTSSYHHTLTV-------LKAYESLNYRRILL 366 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHH---HHHhhcCCCCCeEEEEEeCCCCHHHHHHH-------HHHhcCCCCCEEEE
Confidence 36789999999998742 333444321 11111 112478899998765443321 01123445789999
Q ss_pred ccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCC
Q 023301 103 NKIDLVTETELGSLTERIKHINAMAPVKLAKYGSV 137 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v 137 (284)
+|.|... ..-.+...+... +.||...+.|+-
T Consensus 367 TKLDEt~--~~G~il~i~~~~--~lPI~ylt~GQ~ 397 (432)
T PRK12724 367 TKLDEAD--FLGSFLELADTY--SKSFTYLSVGQE 397 (432)
T ss_pred EcccCCC--CccHHHHHHHHH--CCCEEEEecCCC
Confidence 9999854 344455555544 367776667643
No 173
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=82.35 E-value=3.9 Score=37.99 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=47.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchHHHHHHHhhcC-EEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVNEAVEQVAYAD-RIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D 106 (284)
....+++++|-.+. .... +...-..+.++.|||+..-. .+..+ .+ . ....+.... +|++||+|
T Consensus 80 ~~i~liDtPGh~~f---~~~~-----~~g~~~aD~aIlVVDa~~g~~~~qt~e----~l-~-~l~~~gi~~iIVvvNK~D 145 (406)
T TIGR03680 80 RRVSFVDAPGHETL---MATM-----LSGAALMDGALLVIAANEPCPQPQTKE----HL-M-ALEIIGIKNIVIVQNKID 145 (406)
T ss_pred cEEEEEECCCHHHH---HHHH-----HHHHHHCCEEEEEEECCCCccccchHH----HH-H-HHHHcCCCeEEEEEEccc
Confidence 45679999995332 2221 11223567899999998632 11100 11 1 112222333 67799999
Q ss_pred CCChhHH----HHHHHHHHHhC-CCCceeeec
Q 023301 107 LVTETEL----GSLTERIKHIN-AMAPVKLAK 133 (284)
Q Consensus 107 ~~~~~~~----~~~~~~l~~~n-p~a~i~~~~ 133 (284)
+.+.+.. +++.++++... ...+++.++
T Consensus 146 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vS 177 (406)
T TIGR03680 146 LVSKEKALENYEEIKEFVKGTVAENAPIIPVS 177 (406)
T ss_pred cCCHHHHHHHHHHHHhhhhhcccCCCeEEEEE
Confidence 9876554 33333333322 245676654
No 174
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=82.35 E-value=7.8 Score=31.06 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=36.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH-HHhh-cCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE-QVAY-ADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~-Qi~~-Ad~ivlnK~D~ 107 (284)
....+.+++|......+..... -..+.+|.|+|+.+... +.+.. ..+...+.+ .+.. .=+||.||+|+
T Consensus 57 ~~l~l~D~~G~~~~~~~~~~~~--------~~ad~ii~v~D~t~~~s-~~~~~-~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 57 ISFTVWDVGGQDKIRPLWRHYY--------TNTQGLIFVVDSNDRDR-IDEAR-EELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred EEEEEEECCCChhhHHHHHHHh--------CCCCEEEEEEECCCHHH-HHHHH-HHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 4456788888766554433321 23567899999876432 11110 011111111 1222 33577799998
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
.+
T Consensus 127 ~~ 128 (175)
T smart00177 127 PD 128 (175)
T ss_pred cc
Confidence 54
No 175
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=82.21 E-value=2.2 Score=33.63 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=46.3
Q ss_pred CCEEEEecCCCCCcH-----HHH-HHhcccccccceeeeceEEEEEcccchHHh-hhhcCCccchHHHHHHH-hhcCEEE
Q 023301 30 FDHIVIETTGLAKPA-----PVI-ETFCTDELVSQYVKLDGVITLVDSKHAMQH-LNEVKPRFVVNEAVEQV-AYADRII 101 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~-----~i~-~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~-l~~~~~~~~~~~~~~Qi-~~Ad~iv 101 (284)
....+++|+|..+-. .+. ..+ ..+. ..-+.++.|+|+...... +... ......+.... ...=++|
T Consensus 47 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~---~~~~--~~~d~~l~v~d~~~~~~~~~~~~--~~~~~~l~~~~~~~pvilv 119 (168)
T cd01897 47 LRWQVIDTPGLLDRPLEERNTIEMQAI---TALA--HLRAAVLFLFDPSETCGYSLEEQ--LSLFEEIKPLFKNKPVIVV 119 (168)
T ss_pred eEEEEEECCCcCCccccCCchHHHHHH---HHHH--hccCcEEEEEeCCcccccchHHH--HHHHHHHHhhcCcCCeEEE
Confidence 466889999985411 000 110 0011 113678999999763221 1100 00111111111 3445778
Q ss_pred EccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 102 LNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 102 lnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
+||+|+.+........+..+ . +..+++.++
T Consensus 120 ~NK~Dl~~~~~~~~~~~~~~-~-~~~~~~~~S 149 (168)
T cd01897 120 LNKIDLLTFEDLSEIEEEEE-L-EGEEVLKIS 149 (168)
T ss_pred EEccccCchhhHHHHHHhhh-h-ccCceEEEE
Confidence 89999987666554333322 2 345666655
No 176
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=81.72 E-value=18 Score=28.07 Aligned_cols=100 Identities=15% Similarity=0.183 Sum_probs=50.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~ 107 (284)
..-+++++|......+..... -..++++.|+|+..... +.+.. .+. ..+.+... ..=++|.||+|+
T Consensus 49 ~l~i~Dt~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s-~~~~~-~~~-~~i~~~~~~~~~pii~v~nK~Dl 117 (164)
T smart00173 49 LLDILDTAGQEEFSAMRDQYM--------RTGEGFLLVYSITDRQS-FEEIK-KFR-EQILRVKDRDDVPIVLVGNKCDL 117 (164)
T ss_pred EEEEEECCCcccchHHHHHHH--------hhCCEEEEEEECCCHHH-HHHHH-HHH-HHHHHhcCCCCCCEEEEEECccc
Confidence 344689999887665544322 13567889999876432 12110 000 11122211 123678899998
Q ss_pred CChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+... .+...+..+..+ .++++++. .......++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 118 ESERVVSTEEGKELARQWG--CPFLETSAKERVNVDEAF 154 (164)
T ss_pred cccceEcHHHHHHHHHHcC--CEEEEeecCCCCCHHHHH
Confidence 65321 233344444443 56666653 333444444
No 177
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=81.61 E-value=7.8 Score=31.96 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=9.5
Q ss_pred CCCCEEEEecCCCC
Q 023301 28 GQFDHIVIETTGLA 41 (284)
Q Consensus 28 ~~~d~iiIE~sG~a 41 (284)
.++|+|||+++.+.
T Consensus 126 ~~yD~ViiD~pp~~ 139 (204)
T TIGR01007 126 KYFDYIIIDTPPIG 139 (204)
T ss_pred hcCCEEEEeCCCcc
Confidence 46777777777543
No 178
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=81.58 E-value=4.9 Score=33.09 Aligned_cols=70 Identities=10% Similarity=0.091 Sum_probs=34.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
++..+++++|+.+...-.+.....- .....+.++.|.|. .+...-. .... ...+....-++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~---~~~~~d~~l~v~~~-~~~~~d~-----~~~~-~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEM---KFSEYDFFIIISST-RFSSNDV-----KLAK-AIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHh---CccCcCEEEEEeCC-CCCHHHH-----HHHH-HHHHhCCCEEEEEecccchh
Confidence 4778999999987533222211100 11234555665543 4432110 0111 12223334489999999854
No 179
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=81.04 E-value=2 Score=35.08 Aligned_cols=43 Identities=23% Similarity=0.067 Sum_probs=26.1
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCChh
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVTET 111 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~~~ 111 (284)
..+.++.|+|+..+..... ..+..+. ...-++|+||+|+.+.+
T Consensus 34 ~ad~il~VvD~~~~~~~~~--------~~l~~~~~~~~~ilV~NK~Dl~~~~ 77 (190)
T cd01855 34 KKALVVHVVDIFDFPGSLI--------PRLRLFGGNNPVILVGNKIDLLPKD 77 (190)
T ss_pred CCcEEEEEEECccCCCccc--------hhHHHhcCCCcEEEEEEchhcCCCC
Confidence 4667999999987542211 1122222 23447899999997543
No 180
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=80.97 E-value=14 Score=28.98 Aligned_cols=98 Identities=13% Similarity=0.122 Sum_probs=46.8
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCCh
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVTE 110 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~~ 110 (284)
.-+.+++|-.....+.... + -..+.++.|+|+...... .+. ..++ ..+.... ...=+||.||+|+...
T Consensus 51 ~~i~Dt~G~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~-~~~-~~~~-~~i~~~~~~~p~ivv~nK~Dl~~~ 119 (161)
T cd04124 51 VDFWDTAGQERFQTMHASY-----Y---HKAHACILVFDVTRKITY-KNL-SKWY-EELREYRPEIPCIVVANKIDLDPS 119 (161)
T ss_pred EEEEeCCCchhhhhhhHHH-----h---CCCCEEEEEEECCCHHHH-HHH-HHHH-HHHHHhCCCCcEEEEEECccCchh
Confidence 4467888866544433322 1 245678999998764332 111 0111 1111111 2344788899998532
Q ss_pred hHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 111 TELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 111 ~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
......+..+.. ..+++.++. .......++
T Consensus 120 -~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~ 150 (161)
T cd04124 120 -VTQKKFNFAEKH--NLPLYYVSAADGTNVVKLF 150 (161)
T ss_pred -HHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHH
Confidence 222223332222 255665542 233444443
No 181
>PTZ00416 elongation factor 2; Provisional
Probab=80.92 E-value=2.5 Score=43.16 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=39.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh---cCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY---ADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~---Ad~ivlnK~D 106 (284)
.-+.||.|+|..+...-. ....-..+++|.|||+..-... .. ..+..|+.. .-++++||+|
T Consensus 92 ~~i~liDtPG~~~f~~~~--------~~al~~~D~ailVvda~~g~~~----~t----~~~~~~~~~~~~p~iv~iNK~D 155 (836)
T PTZ00416 92 FLINLIDSPGHVDFSSEV--------TAALRVTDGALVVVDCVEGVCV----QT----ETVLRQALQERIRPVLFINKVD 155 (836)
T ss_pred eEEEEEcCCCHHhHHHHH--------HHHHhcCCeEEEEEECCCCcCc----cH----HHHHHHHHHcCCCEEEEEEChh
Confidence 346899999998743211 1112357789999999773321 01 122344433 5689999999
Q ss_pred CC
Q 023301 107 LV 108 (284)
Q Consensus 107 ~~ 108 (284)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 96
No 182
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=80.78 E-value=9.4 Score=33.28 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=43.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+..+.+++|+|..+...-... .+ -..+.+|.|+|+..-..... ..+. ....+....=+|++||+|+.
T Consensus 70 ~~~i~liDTPG~~df~~~~~~-----~l---~~aD~~IlVvda~~g~~~~~----~~i~-~~~~~~~~P~iivvNK~D~~ 136 (267)
T cd04169 70 DCVINLLDTPGHEDFSEDTYR-----TL---TAVDSAVMVIDAAKGVEPQT----RKLF-EVCRLRGIPIITFINKLDRE 136 (267)
T ss_pred CEEEEEEECCCchHHHHHHHH-----HH---HHCCEEEEEEECCCCccHHH----HHHH-HHHHhcCCCEEEEEECCccC
Confidence 567789999998764431111 11 24678999999976321100 0010 11122234568889999985
Q ss_pred ChhHHHHHHHHHHH
Q 023301 109 TETELGSLTERIKH 122 (284)
Q Consensus 109 ~~~~~~~~~~~l~~ 122 (284)
... ..++.+.+++
T Consensus 137 ~a~-~~~~~~~l~~ 149 (267)
T cd04169 137 GRD-PLELLDEIEE 149 (267)
T ss_pred CCC-HHHHHHHHHH
Confidence 432 2233444444
No 183
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=80.75 E-value=8.8 Score=29.81 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=45.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-----hhcCEEEEcc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-----AYADRIILNK 104 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-----~~Ad~ivlnK 104 (284)
.+..+.+++|......+.... + -..+.++.|.|....... ... .....++ ...=+||.||
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~-----~---~~~~~~v~v~d~~~~~s~-~~l------~~~~~~~~~~~~~~p~iiv~nK 115 (162)
T cd04106 51 VRLMLWDTAGQEEFDAITKAY-----Y---RGAQACILVFSTTDRESF-EAI------ESWKEKVEAECGDIPMVLVQTK 115 (162)
T ss_pred EEEEEeeCCchHHHHHhHHHH-----h---cCCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhCCCCCEEEEEEC
Confidence 345677888865444433221 1 145667888888664321 111 1112222 2233788899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+.+... .++..+..+.++ .++++++
T Consensus 116 ~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~S 144 (162)
T cd04106 116 IDLLDQAVITNEEAEALAKRLQ--LPLFRTS 144 (162)
T ss_pred hhcccccCCCHHHHHHHHHHcC--CeEEEEE
Confidence 99865433 233444444433 4666655
No 184
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=80.75 E-value=1.1 Score=32.89 Aligned_cols=72 Identities=17% Similarity=0.123 Sum_probs=41.9
Q ss_pred EEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhH---HHHHHHHHHHhC-CCCceeee-ccCCCChh
Q 023301 66 ITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETE---LGSLTERIKHIN-AMAPVKLA-KYGSVDMD 140 (284)
Q Consensus 66 v~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~---~~~~~~~l~~~n-p~a~i~~~-~~g~v~~~ 140 (284)
.-..|+..+...+...+. ...+..+.||+||+|=+--...++ +..++++. +.+ |.+.|+.+ -+.+...+
T Consensus 11 ~N~~Dse~i~~~l~~~G~-----~~~~~~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~-~~~~~~~~ivv~GC~aq~~~~ 84 (98)
T PF00919_consen 11 MNQYDSERIASILQAAGY-----EIVDDPEEADVIIINTCTVRESAEQKSRNRIRKLK-KLKKPGAKIVVTGCMAQRYGE 84 (98)
T ss_pred ccHHHHHHHHHHHHhcCC-----eeecccccCCEEEEEcCCCCcHHHHHHHHHHHHHH-HhcCCCCEEEEEeCccccChH
Confidence 344566666666655432 224556889999999996544433 44444433 344 88887754 34444555
Q ss_pred hhh
Q 023301 141 FVL 143 (284)
Q Consensus 141 ~l~ 143 (284)
.+.
T Consensus 85 ~l~ 87 (98)
T PF00919_consen 85 ELK 87 (98)
T ss_pred HHH
Confidence 544
No 185
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=80.70 E-value=9.6 Score=29.58 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=47.0
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDLV 108 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~~ 108 (284)
+..+++++|...-..+.... + -..+.+|.|+|+.+.... .... .++ ..+..+. ...-+++.||+|+.
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~-----~---~~~d~~ilv~d~~~~~s~-~~~~-~~l-~~~~~~~~~~~pivvv~nK~D~~ 118 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSY-----Y---RGAVGALLVYDITNRESF-ENLK-NWL-KELREYADPNVVIMLVGNKSDLE 118 (164)
T ss_pred EEEEEECCChHHHHHHHHHH-----h---CCCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHhCCCCCeEEEEEEchhcc
Confidence 34577888854433322221 1 236789999999875432 2110 011 1111111 24567888999986
Q ss_pred Chh--HHHHHHHHHHHhCCCCceeeecc
Q 023301 109 TET--ELGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 109 ~~~--~~~~~~~~l~~~np~a~i~~~~~ 134 (284)
... ..+.+++..+..+ .++++++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~--~~~~e~Sa 144 (164)
T smart00175 119 DQRQVSREEAEAFAEEHG--LPFFETSA 144 (164)
T ss_pred cccCCCHHHHHHHHHHcC--CeEEEEeC
Confidence 532 2344555555433 55666553
No 186
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=80.62 E-value=11 Score=29.87 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=34.1
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-------hcCEEEEccCCCCChhHH--HHHHHHHHHhCCCCceee
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-------YADRIILNKIDLVTETEL--GSLTERIKHINAMAPVKL 131 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-------~Ad~ivlnK~D~~~~~~~--~~~~~~l~~~np~a~i~~ 131 (284)
..+.+|.|+|+.+.... .+. .....++. ..=+||.||+|+....++ +...+..+.. ..++++
T Consensus 75 ~~d~~i~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~e 145 (170)
T cd04115 75 NVHAVVFVYDVTNMASF-HSL------PSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAH--SMPLFE 145 (170)
T ss_pred CCCEEEEEEECCCHHHH-HhH------HHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHc--CCcEEE
Confidence 45778999999874432 111 11222222 234788899998543321 2222333332 366766
Q ss_pred ecc
Q 023301 132 AKY 134 (284)
Q Consensus 132 ~~~ 134 (284)
++.
T Consensus 146 ~Sa 148 (170)
T cd04115 146 TSA 148 (170)
T ss_pred Eec
Confidence 653
No 187
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=80.62 E-value=6.6 Score=37.86 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=38.8
Q ss_pred CCCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~ 107 (284)
+..+.++.|+|..+... .... .-..+.+|.|||+........ +.+. .........-++++||+|+
T Consensus 79 ~~~inliDTPG~~df~~~~~~~---------l~~aD~aIlVvDa~~gv~~~t----~~l~-~~~~~~~~PiivviNKiD~ 144 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRT---------LTAVDNCLMVIDAAKGVETRT----RKLM-EVTRLRDTPIFTFMNKLDR 144 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHH---------HHhCCEEEEEEECCCCCCHHH----HHHH-HHHHhcCCCEEEEEECccc
Confidence 56678999999865433 1111 235778999999987321100 0111 1122223456789999998
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
..
T Consensus 145 ~~ 146 (527)
T TIGR00503 145 DI 146 (527)
T ss_pred cC
Confidence 53
No 188
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=80.59 E-value=2.4 Score=43.37 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=44.7
Q ss_pred EEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh---cCEEEEccCCCC-
Q 023301 33 IVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY---ADRIILNKIDLV- 108 (284)
Q Consensus 33 iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~---Ad~ivlnK~D~~- 108 (284)
=||.|+|-.+...-.. ...-..++.|.|||+..-..... ..+..|+.. +-++++||+|+.
T Consensus 101 nliDtPGh~dF~~e~~--------~al~~~D~ailVvda~~Gv~~~t--------~~~~~~~~~~~~p~i~~iNK~D~~~ 164 (843)
T PLN00116 101 NLIDSPGHVDFSSEVT--------AALRITDGALVVVDCIEGVCVQT--------ETVLRQALGERIRPVLTVNKMDRCF 164 (843)
T ss_pred EEECCCCHHHHHHHHH--------HHHhhcCEEEEEEECCCCCcccH--------HHHHHHHHHCCCCEEEEEECCcccc
Confidence 3789999866432111 11234678899999986432110 122334433 448999999998
Q ss_pred ------ChhHHHHHHHHHHHhC
Q 023301 109 ------TETELGSLTERIKHIN 124 (284)
Q Consensus 109 ------~~~~~~~~~~~l~~~n 124 (284)
..+....+.+.+.++|
T Consensus 165 ~~~~~~~~~~~~~~~~vi~~in 186 (843)
T PLN00116 165 LELQVDGEEAYQTFSRVIENAN 186 (843)
T ss_pred hhhcCCHHHHHHHHHHHHHHHH
Confidence 4444455566666665
No 189
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=80.59 E-value=3.8 Score=38.53 Aligned_cols=82 Identities=22% Similarity=0.348 Sum_probs=50.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
.-+=||.|+|=|+..-=.+.++ -.+++|+.+|||..-.+ .+ .+++...+. -...-=+||+||+|..+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl--------~MVDgvlLlVDA~EGpM--PQ--TrFVlkKAl-~~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVL--------SMVDGVLLLVDASEGPM--PQ--TRFVLKKAL-ALGLKPIVVINKIDRPD 134 (603)
T ss_pred eEEEEecCCCcCCccchhhhhh--------hhcceEEEEEEcccCCC--Cc--hhhhHHHHH-HcCCCcEEEEeCCCCCC
Confidence 3445789999999775444332 25889999999977543 22 233322222 23446799999999854
Q ss_pred ---hhHHHHHHHHHHHhC
Q 023301 110 ---ETELGSLTERIKHIN 124 (284)
Q Consensus 110 ---~~~~~~~~~~l~~~n 124 (284)
++.++++....-++.
T Consensus 135 Arp~~Vvd~vfDLf~~L~ 152 (603)
T COG1217 135 ARPDEVVDEVFDLFVELG 152 (603)
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 334555555555554
No 190
>PLN03126 Elongation factor Tu; Provisional
Probab=80.57 E-value=2.7 Score=40.03 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=47.6
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCE-EEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADR-IILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~-ivlnK~D~ 107 (284)
+..+.||+++|..+. +... ....-..+.++.|||+..-..... +... .+........+ |++||+|+
T Consensus 143 ~~~i~liDtPGh~~f---~~~~-----~~g~~~aD~ailVVda~~G~~~qt----~e~~-~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 143 NRHYAHVDCPGHADY---VKNM-----ITGAAQMDGAILVVSGADGPMPQT----KEHI-LLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CcEEEEEECCCHHHH---HHHH-----HHHHhhCCEEEEEEECCCCCcHHH----HHHH-HHHHHcCCCeEEEEEecccc
Confidence 446789999996552 2221 111224677899999886422100 0000 11222233434 57999999
Q ss_pred CChhH-HH----HHHHHHHHh--CC-CCceeeec
Q 023301 108 VTETE-LG----SLTERIKHI--NA-MAPVKLAK 133 (284)
Q Consensus 108 ~~~~~-~~----~~~~~l~~~--np-~a~i~~~~ 133 (284)
++.++ .+ ++++.++.+ ++ +.+++..+
T Consensus 210 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~S 243 (478)
T PLN03126 210 VDDEELLELVELEVRELLSSYEFPGDDIPIISGS 243 (478)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEE
Confidence 87544 23 344444443 21 45665543
No 191
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=80.43 E-value=6.8 Score=30.44 Aligned_cols=89 Identities=11% Similarity=0.159 Sum_probs=45.2
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh--hcCEEEEccCCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA--YADRIILNKIDLVT 109 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~--~Ad~ivlnK~D~~~ 109 (284)
..+++++|-.........+. -..+.+|.|+|....... .+. ..++ ..+..+.. .+=++++||+|+..
T Consensus 51 l~~~D~~G~~~~~~~~~~~~--------~~~~~ii~v~d~~~~~s~-~~~-~~~~-~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDITNRQSF-DNT-DKWI-DDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred EEEEECCCcHHHHHHHHHHh--------ccCCEEEEEEECcCHHHH-HHH-HHHH-HHHHHhCCCCCEEEEEEEChhccc
Confidence 46788999655544433322 134578999999764322 111 0111 11222222 45677889999943
Q ss_pred hhH--HHHHHHHHHHhCCCCceeeec
Q 023301 110 ETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 110 ~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
..+ .+......+.. .++++.++
T Consensus 120 ~~~~~~~~~~~~~~~~--~~~~~~~S 143 (161)
T cd01861 120 KRQVSTEEGEKKAKEL--NAMFIETS 143 (161)
T ss_pred cCccCHHHHHHHHHHh--CCEEEEEe
Confidence 322 22333333333 25666554
No 192
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=80.38 E-value=12 Score=29.67 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=20.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
...+.+++|......+... . .-..+.+|.|+|+....
T Consensus 45 ~l~i~Dt~G~~~~~~~~~~-----~---~~~ad~ii~V~D~t~~~ 81 (164)
T cd04162 45 IMELLEIGGSQNLRKYWKR-----Y---LSGSQGLIFVVDSADSE 81 (164)
T ss_pred EEEEEECCCCcchhHHHHH-----H---HhhCCEEEEEEECCCHH
Confidence 3455677776554433221 1 12456788888887744
No 193
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=80.24 E-value=9.7 Score=30.80 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=23.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
....+++++|......+.... .-..+.+|.|+|+.+..
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~--------~~~ad~iI~v~D~t~~~ 98 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHY--------YQNTNGLIFVVDSNDRE 98 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHH--------hcCCCEEEEEEeCCCHH
Confidence 345677888875544432221 12456789999997643
No 194
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=80.17 E-value=10 Score=30.16 Aligned_cols=69 Identities=16% Similarity=0.272 Sum_probs=37.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D 106 (284)
+...+++++|......+.... ....+.++.|+|....... .... .....+.++. ..+-++++||+|
T Consensus 49 ~~~~l~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~-~~~~--~~~~~~~~~~~~~~~p~ilv~NK~D 117 (180)
T cd04137 49 YHLEIVDTAGQDEYSILPQKY--------SIGIHGYILVYSVTSRKSF-EVVK--VIYDKILDMLGKESVPIVLVGNKSD 117 (180)
T ss_pred EEEEEEECCChHhhHHHHHHH--------HhhCCEEEEEEECCCHHHH-HHHH--HHHHHHHHhcCCCCCCEEEEEEchh
Confidence 345788999976543322221 1245667888888775432 1110 0111222222 235689999999
Q ss_pred CCC
Q 023301 107 LVT 109 (284)
Q Consensus 107 ~~~ 109 (284)
+..
T Consensus 118 l~~ 120 (180)
T cd04137 118 LHT 120 (180)
T ss_pred hhh
Confidence 864
No 195
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=79.83 E-value=2.5 Score=39.36 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=39.7
Q ss_pred CCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
....+++|+|+..... +.+.+.. ......-..+.++.|+|+..-..... ..+. ....+....-++|+||+|+.
T Consensus 47 ~~~~liDTpG~~~~~~~~~~~~~~-~~~~~~~~ad~vl~vvD~~~~~~~~d----~~i~-~~l~~~~~piilVvNK~D~~ 120 (429)
T TIGR03594 47 REFILIDTGGIEEDDDGLDKQIRE-QAEIAIEEADVILFVVDGREGLTPED----EEIA-KWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred eEEEEEECCCCCCcchhHHHHHHH-HHHHHHhhCCEEEEEEeCCCCCCHHH----HHHH-HHHHHhCCCEEEEEECccCC
Confidence 3467899999854322 1111111 11111224678999999976322111 1111 11233344558889999987
Q ss_pred Chh
Q 023301 109 TET 111 (284)
Q Consensus 109 ~~~ 111 (284)
+.+
T Consensus 121 ~~~ 123 (429)
T TIGR03594 121 KED 123 (429)
T ss_pred ccc
Confidence 644
No 196
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=79.72 E-value=8.1 Score=31.18 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=37.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D~ 107 (284)
...+++++|......+... .+ -..+.++.|+|+...... .... ..+ ..+.++ -...=+|+.||+|+
T Consensus 64 ~~~l~D~~G~~~~~~~~~~-----~~---~~ad~iilV~D~~~~~s~-~~~~-~~~-~~i~~~~~~~~~pvivv~NK~Dl 132 (190)
T cd00879 64 KFKTFDLGGHEQARRLWKD-----YF---PEVDGIVFLVDAADPERF-QESK-EEL-DSLLSDEELANVPFLILGNKIDL 132 (190)
T ss_pred EEEEEECCCCHHHHHHHHH-----Hh---ccCCEEEEEEECCcHHHH-HHHH-HHH-HHHHcCccccCCCEEEEEeCCCC
Confidence 4456777775433222111 11 234778999999864321 1110 011 011111 11344777899998
Q ss_pred CChhHHHHHHHHH
Q 023301 108 VTETELGSLTERI 120 (284)
Q Consensus 108 ~~~~~~~~~~~~l 120 (284)
......+.+++.+
T Consensus 133 ~~~~~~~~~~~~~ 145 (190)
T cd00879 133 PGAVSEEELRQAL 145 (190)
T ss_pred CCCcCHHHHHHHh
Confidence 6433344444444
No 197
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=79.67 E-value=18 Score=28.18 Aligned_cols=98 Identities=9% Similarity=0.141 Sum_probs=47.6
Q ss_pred EEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCCC
Q 023301 33 IVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLVT 109 (284)
Q Consensus 33 iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~~ 109 (284)
-+.+++|......+..... -..++++.|+|....... .+.. .+. ..+..... ..=+||.||+|+.+
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~-~~~~-~~~-~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 52 EILDTAGTEQFTAMRDLYM--------KNGQGFVLVYSITAQSTF-NDLQ-DLR-EQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred EEEECCCcccchhHHHHHH--------hhCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHhcCCCCCCEEEEEECCcchh
Confidence 4678888766655444322 134567888887654321 1110 011 11122111 23478889999964
Q ss_pred hhHH--HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 110 ETEL--GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 110 ~~~~--~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.... ....+..+..+ .++++++. .......++
T Consensus 121 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~ 155 (164)
T cd04175 121 ERVVGKEQGQNLARQWG--CAFLETSAKAKINVNEIF 155 (164)
T ss_pred ccEEcHHHHHHHHHHhC--CEEEEeeCCCCCCHHHHH
Confidence 3221 22333333333 56666653 233444443
No 198
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=79.60 E-value=1.6 Score=42.62 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=45.8
Q ss_pred CCCEEEEecCCCCCcHHHHHHhccccccccee----eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYV----KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~----~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
.-++-+|+.+|+....+. ..|+.....| ..|.+|.||||.|++..+.= ..-.-.+...=++++|+
T Consensus 49 ~~~i~ivDLPG~YSL~~~----S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLyl-------tlQLlE~g~p~ilaLNm 117 (653)
T COG0370 49 GHEIEIVDLPGTYSLTAY----SEDEKVARDFLLEGKPDLIVNVVDATNLERNLYL-------TLQLLELGIPMILALNM 117 (653)
T ss_pred CceEEEEeCCCcCCCCCC----CchHHHHHHHHhcCCCCEEEEEcccchHHHHHHH-------HHHHHHcCCCeEEEecc
Confidence 445789999999986542 1122222222 45789999999998765421 11234455566889999
Q ss_pred CCCCCh
Q 023301 105 IDLVTE 110 (284)
Q Consensus 105 ~D~~~~ 110 (284)
+|.+..
T Consensus 118 ~D~A~~ 123 (653)
T COG0370 118 IDEAKK 123 (653)
T ss_pred HhhHHh
Confidence 998653
No 199
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=79.46 E-value=11 Score=28.77 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=38.3
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH-HH-hhcCEEEEccCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE-QV-AYADRIILNKIDLV 108 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~-Qi-~~Ad~ivlnK~D~~ 108 (284)
...+++++|......+..... -..+.++.|+|+......... . ..+...... .. ...=+||+||+|+.
T Consensus 45 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~~~~~~-~-~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 45 TLKVWDLGGQPRFRSMWERYC--------RGVNAIVYVVDAADRTALEAA-K-NELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred EEEEEECCCCHhHHHHHHHHH--------hcCCEEEEEEECCCHHHHHHH-H-HHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 346778888755444333221 235678999999875432110 0 000000000 01 12336788999987
Q ss_pred ChhHHHHH
Q 023301 109 TETELGSL 116 (284)
Q Consensus 109 ~~~~~~~~ 116 (284)
+......+
T Consensus 115 ~~~~~~~~ 122 (159)
T cd04159 115 GALSVDEL 122 (159)
T ss_pred CCcCHHHH
Confidence 65444333
No 200
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=79.40 E-value=3.5 Score=31.69 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=29.1
Q ss_pred CEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 98 DRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 98 d~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
-+=|++|+|++++++++..++++++.- .-+|+.++
T Consensus 93 vIgvVTK~DLaed~dI~~~~~~L~eaG-a~~IF~~s 127 (148)
T COG4917 93 VIGVVTKADLAEDADISLVKRWLREAG-AEPIFETS 127 (148)
T ss_pred eEEEEecccccchHhHHHHHHHHHHcC-CcceEEEe
Confidence 566899999999999999999999887 45566664
No 201
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=79.40 E-value=6 Score=36.92 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=36.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc-CEEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA-DRIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A-d~ivlnK~D~ 107 (284)
+..+.|++|+|.-+... .. .......+.++.|||+..... +.. ..+... .+...+... =+|++||+|+
T Consensus 83 ~~~i~liDtpG~~~~~~---~~-----~~~~~~aD~~ilVvDa~~~~~-~~~-~~~~~~-~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVK---NM-----ITGASQADAAVLVVAADDAGG-VMP-QTREHV-FLARTLGINQLIVAINKMDA 151 (425)
T ss_pred CeEEEEEECCCcccchh---hH-----hhchhcCCEEEEEEEcccCCC-CCc-chHHHH-HHHHHcCCCeEEEEEEcccc
Confidence 45678999999643221 11 111235788999999975200 000 000110 112223322 2568899999
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
.+
T Consensus 152 ~~ 153 (425)
T PRK12317 152 VN 153 (425)
T ss_pred cc
Confidence 75
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=79.18 E-value=5 Score=39.40 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=45.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
....+++++|..+........ .-..+.+|.|+|+..-... + .+.... ...+....-+|++||+|+.+
T Consensus 68 ~~inliDTPG~~df~~~v~~~--------l~~aDg~ILVVDa~~G~~~--q--t~~~l~-~a~~~gip~IVviNKiD~~~ 134 (607)
T PRK10218 68 YRINIVDTPGHADFGGEVERV--------MSMVDSVLLVVDAFDGPMP--Q--TRFVTK-KAFAYGLKPIVVINKVDRPG 134 (607)
T ss_pred EEEEEEECCCcchhHHHHHHH--------HHhCCEEEEEEecccCccH--H--HHHHHH-HHHHcCCCEEEEEECcCCCC
Confidence 455789999998876543322 1357789999999763211 0 011111 12334456699999999853
Q ss_pred h---hHHHHHHHHH
Q 023301 110 E---TELGSLTERI 120 (284)
Q Consensus 110 ~---~~~~~~~~~l 120 (284)
. +.++.+.+.+
T Consensus 135 a~~~~vl~ei~~l~ 148 (607)
T PRK10218 135 ARPDWVVDQVFDLF 148 (607)
T ss_pred CchhHHHHHHHHHH
Confidence 2 2344444444
No 203
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=79.17 E-value=24 Score=28.83 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=48.9
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEccC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNKI 105 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK~ 105 (284)
..+.+++|......+.... + -..+++|.|+|....... .+. ..+. ..+...+. ..=+||.||+
T Consensus 52 l~l~Dt~G~~~~~~~~~~~-----~---~~a~~~ilv~D~t~~~s~-~~~-~~~~-~~i~~~~~~~~~~~~piilv~NK~ 120 (201)
T cd04107 52 LQLWDIAGQERFGGMTRVY-----Y---RGAVGAIIVFDVTRPSTF-EAV-LKWK-ADLDSKVTLPNGEPIPCLLLANKC 120 (201)
T ss_pred EEEEECCCchhhhhhHHHH-----h---CCCCEEEEEEECCCHHHH-HHH-HHHH-HHHHHhhcccCCCCCcEEEEEECC
Confidence 3455777764433322221 1 245788999998774332 211 0111 11122211 1237888999
Q ss_pred CCCC--hhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 106 DLVT--ETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 106 D~~~--~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+.+ ....+.+.++.+..+ ...+++++. .......++
T Consensus 121 Dl~~~~~~~~~~~~~~~~~~~-~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 121 DLKKRLAKDGEQMDQFCKENG-FIGWFETSAKEGINIEEAM 160 (201)
T ss_pred CcccccccCHHHHHHHHHHcC-CceEEEEeCCCCCCHHHHH
Confidence 9962 223345555555443 245666653 233444444
No 204
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.05 E-value=15 Score=37.10 Aligned_cols=97 Identities=25% Similarity=0.327 Sum_probs=54.8
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh--hcCEEEEcc
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA--YADRIILNK 104 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~--~Ad~ivlnK 104 (284)
.+.|+|||.|.|...-. .+.+.+.. +.....-.-++.|+|+..-.+.+.+. ... ...+. .-+-+|+||
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~---l~~~~~p~e~~LVLsAt~~~~~l~~i-----~~~-f~~~~~~~i~glIlTK 332 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAM---LCGVGRPVRRLLLLNAASHGDTLNEV-----VHA-YRHGAGEDVDGCIITK 332 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHH---HhccCCCCeEEEEECCCCcHHHHHHH-----HHH-HhhcccCCCCEEEEec
Confidence 35699999999987632 33333321 11222333578999998643333221 001 12221 467899999
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCceeeeccC-CC
Q 023301 105 IDLVTETELGSLTERIKHINAMAPVKLAKYG-SV 137 (284)
Q Consensus 105 ~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g-~v 137 (284)
.|... ..-.+...+... +.+|...+.| +|
T Consensus 333 LDEt~--~~G~iL~i~~~~--~lPI~yit~GQ~V 362 (767)
T PRK14723 333 LDEAT--HLGPALDTVIRH--RLPVHYVSTGQKV 362 (767)
T ss_pred cCCCC--CccHHHHHHHHH--CCCeEEEecCCCC
Confidence 99865 344555555544 3667666666 44
No 205
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=78.91 E-value=26 Score=26.80 Aligned_cols=91 Identities=15% Similarity=0.160 Sum_probs=47.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D 106 (284)
....+++++|........... + -..+.++.|+|..+.... .+.. .....+.+.. ...=++++||+|
T Consensus 47 ~~~~l~D~~g~~~~~~~~~~~-----~---~~~~~~i~v~d~~~~~s~-~~~~--~~~~~~~~~~~~~~~p~ivv~nK~D 115 (160)
T cd00876 47 YTLDILDTAGQEEFSAMRDLY-----I---RQGDGFILVYSITDRESF-EEIK--GYREQILRVKDDEDIPIVLVGNKCD 115 (160)
T ss_pred EEEEEEECCChHHHHHHHHHH-----H---hcCCEEEEEEECCCHHHH-HHHH--HHHHHHHHhcCCCCCcEEEEEECCc
Confidence 345678999977655443322 1 135778999998774421 1110 0101111211 233468889999
Q ss_pred CCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 107 LVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 107 ~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+..... .+.+.+..+..+ .+++.++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~--~~~~~~S 142 (160)
T cd00876 116 LENERQVSKEEGKALAKEWG--CPFIETS 142 (160)
T ss_pred ccccceecHHHHHHHHHHcC--CcEEEec
Confidence 875222 244444555444 4555554
No 206
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=78.39 E-value=15 Score=28.83 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=46.6
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~ 108 (284)
..+++++|.-......... .-..+.++.|+|....... ... +.++ . ...++. ..-++|.||+|+.
T Consensus 58 ~~~~D~~g~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~-~~~-~~~~-~-~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 58 LQIWDTAGQERFRSITQSY--------YRSANALILTYDITCEESF-RCL-PEWL-R-EIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred EEEEECCCcHHHHHHHHHH--------hcCCCEEEEEEECcCHHHH-HHH-HHHH-H-HHHHhCCCCCeEEEEEECcccc
Confidence 4556777754332221111 1235678999998764321 111 0011 0 112222 2238889999997
Q ss_pred ChhHH-HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 109 TETEL-GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 109 ~~~~~-~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+..++ ....+.+....+ .++++++. .......++
T Consensus 126 ~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~ 161 (169)
T cd04114 126 ERREVSQQRAEEFSDAQD-MYYLETSAKESDNVEKLF 161 (169)
T ss_pred cccccCHHHHHHHHHHcC-CeEEEeeCCCCCCHHHHH
Confidence 54332 233344444444 55655542 233444443
No 207
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=78.36 E-value=17 Score=28.11 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=43.0
Q ss_pred EEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCCCC
Q 023301 33 IVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDLVT 109 (284)
Q Consensus 33 iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~~~ 109 (284)
-+.+++|......+..... -..+.++.|+|....... .+.. .+. ..+.... ...=+||.||+|+.+
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~--------~~~~~~ilv~d~~~~~s~-~~~~-~~~-~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 52 EILDTAGTEQFTAMRDLYI--------KNGQGFVLVYSITSQSSF-NDLQ-DLR-EQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred EEEECCCccccchHHHHHh--------hcCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHhcCCCCCCEEEEEECccccc
Confidence 4578999766655433321 134678888888664321 1110 000 1111111 123367889999865
Q ss_pred hhHH--HHHHHHHHHhCCCCceeeec
Q 023301 110 ETEL--GSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 110 ~~~~--~~~~~~l~~~np~a~i~~~~ 133 (284)
...+ +...+..+..+ .++++++
T Consensus 121 ~~~~~~~~~~~~~~~~~--~~~~~~S 144 (163)
T cd04136 121 ERVVSREEGQALARQWG--CPFYETS 144 (163)
T ss_pred cceecHHHHHHHHHHcC--CeEEEec
Confidence 3222 22233333333 5666665
No 208
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=78.32 E-value=33 Score=27.50 Aligned_cols=76 Identities=20% Similarity=0.315 Sum_probs=45.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC------EEE
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD------RII 101 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad------~iv 101 (284)
..+|+|||++++.-... +...+. .-+.+|.++++.... +... ..+.+.++... .+|
T Consensus 93 ~~yD~iiiD~~~~~~~~-~~~~l~---------~ad~viv~~~~~~~~--i~~~------~~~~~~l~~~~~~~~~~~vv 154 (195)
T PF01656_consen 93 SDYDYIIIDTPPGLSDP-VRNALA---------AADYVIVPIEPDPSS--IEGA------ERLIELLKRLGKKLKIIGVV 154 (195)
T ss_dssp TTSSEEEEEECSSSSHH-HHHHHH---------TSSEEEEEEESSHHH--HHHH------HHHHHHHHHHTHTEEEEEEE
T ss_pred ccccceeecccccccHH-HHHHHH---------hCceeeeecCCcHHH--HHHH------HHHHHHHHHhccccceEEEE
Confidence 44999999998755544 222322 234578899987754 2221 12334444333 789
Q ss_pred EccCCCCChhHHHHHHHHHH
Q 023301 102 LNKIDLVTETELGSLTERIK 121 (284)
Q Consensus 102 lnK~D~~~~~~~~~~~~~l~ 121 (284)
+||.+.-.....+.......
T Consensus 155 ~N~v~~~~~~~~~~~~~~~~ 174 (195)
T PF01656_consen 155 INRVDPGNESKLQEEIEEIE 174 (195)
T ss_dssp EEEETSCCHHHHHHHHHHHH
T ss_pred EeeeCCCccchHHHHHHHHH
Confidence 99998876555554443333
No 209
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=77.95 E-value=8.9 Score=34.77 Aligned_cols=94 Identities=16% Similarity=0.294 Sum_probs=57.1
Q ss_pred cCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEE-EEccC
Q 023301 27 QGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRI-ILNKI 105 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~i-vlnK~ 105 (284)
..+.+.-+|+|+|=|. +++++.. ..--+|-++.|||+..-.. .....-++..|+.+-.+| |+||+
T Consensus 67 ~e~lq~tlvDCPGHas---LIRtiig-----gaqiiDlm~lviDv~kG~Q------tQtAEcLiig~~~c~klvvvinki 132 (522)
T KOG0461|consen 67 GEQLQFTLVDCPGHAS---LIRTIIG-----GAQIIDLMILVIDVQKGKQ------TQTAECLIIGELLCKKLVVVINKI 132 (522)
T ss_pred cccceeEEEeCCCcHH---HHHHHHh-----hhheeeeeeEEEehhcccc------cccchhhhhhhhhccceEEEEecc
Confidence 3456778999999765 4555432 2234677899999976432 112224467888888765 55999
Q ss_pred CCCChhH----HHHHHHHHHH----h--CCCCceeeecc
Q 023301 106 DLVTETE----LGSLTERIKH----I--NAMAPVKLAKY 134 (284)
Q Consensus 106 D~~~~~~----~~~~~~~l~~----~--np~a~i~~~~~ 134 (284)
|...+.+ +++..+.+++ - ..+++|+..+.
T Consensus 133 d~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa 171 (522)
T KOG0461|consen 133 DVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSA 171 (522)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEec
Confidence 9877633 3333333332 1 23578876653
No 210
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=77.90 E-value=15 Score=29.86 Aligned_cols=95 Identities=18% Similarity=0.190 Sum_probs=47.2
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---------hcCEEEE
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---------YADRIIL 102 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---------~Ad~ivl 102 (284)
.-|++++|......+.... + -..+.++.|+|..+.... .+. .....++. ..=+||.
T Consensus 49 l~i~Dt~G~~~~~~~~~~~-----~---~~ad~~ilv~d~~~~~s~-~~~------~~~~~~i~~~~~~~~~~~piilvg 113 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQW-----I---REGEGFILVYSITSRSTF-ERV------ERFREQIQRVKDESAADVPIMIVG 113 (190)
T ss_pred EEEEECCCchhhHHHHHHH-----H---HhCCEEEEEEECCCHHHH-HHH------HHHHHHHHHHhcccCCCCCEEEEE
Confidence 4567888875544432221 1 135678889998774321 111 11122221 1236688
Q ss_pred ccCCCCChhHH--HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 103 NKIDLVTETEL--GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 103 nK~D~~~~~~~--~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
||+|+.+...+ ....+..+.++ +++++++. .......++
T Consensus 114 NK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 114 NKCDKVYEREVSTEEGAALARRLG--CEFIEASAKTNVNVERAF 155 (190)
T ss_pred EChhccccCccCHHHHHHHHHHhC--CEEEEecCCCCCCHHHHH
Confidence 99999643332 22333344443 45666543 233444444
No 211
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=77.82 E-value=13 Score=31.26 Aligned_cols=74 Identities=14% Similarity=0.026 Sum_probs=38.5
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHH-------hhcCEEEEccCCCCChhHH--HHHHHHHHHhCCCCceee
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-------AYADRIILNKIDLVTETEL--GSLTERIKHINAMAPVKL 131 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-------~~Ad~ivlnK~D~~~~~~~--~~~~~~l~~~np~a~i~~ 131 (284)
..+.++.|+|+.+.... .+. .....++ ...=+||.||+|+....++ +...+..... .+++++
T Consensus 72 ~ad~iilV~d~td~~S~-~~~------~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~--~~~~~e 142 (221)
T cd04148 72 QGDAFVVVYSVTDRSSF-ERA------SELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVF--DCKFIE 142 (221)
T ss_pred CCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHc--CCeEEE
Confidence 57889999999875432 211 1112222 2234778899999654332 2222222222 356776
Q ss_pred ecc-CCCChhhhh
Q 023301 132 AKY-GSVDMDFVL 143 (284)
Q Consensus 132 ~~~-g~v~~~~l~ 143 (284)
++. .......++
T Consensus 143 ~SA~~~~gv~~l~ 155 (221)
T cd04148 143 TSAGLQHNVDELL 155 (221)
T ss_pred ecCCCCCCHHHHH
Confidence 653 233455554
No 212
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=77.69 E-value=19 Score=28.35 Aligned_cols=88 Identities=11% Similarity=0.149 Sum_probs=43.1
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~ 108 (284)
..+.+++|.-....+.... + -..+.+|.|.|+..... +.+.. .++ ..+ .+.. ..=+||.||+|+.
T Consensus 54 l~l~D~~g~~~~~~~~~~~-----~---~~ad~~i~v~d~~~~~s-~~~~~-~~~-~~i-~~~~~~~~p~iiv~nK~Dl~ 121 (167)
T cd01867 54 LQIWDTAGQERFRTITTAY-----Y---RGAMGIILVYDITDEKS-FENIR-NWM-RNI-EEHASEDVERMLVGNKCDME 121 (167)
T ss_pred EEEEeCCchHHHHHHHHHH-----h---CCCCEEEEEEECcCHHH-HHhHH-HHH-HHH-HHhCCCCCcEEEEEECcccc
Confidence 3456777754443332221 1 24578999999876433 22211 111 111 1211 1237888999997
Q ss_pred Chh--HHHHHHHHHHHhCCCCceeeec
Q 023301 109 TET--ELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 109 ~~~--~~~~~~~~l~~~np~a~i~~~~ 133 (284)
+.. ..+...+..+..+ .++++++
T Consensus 122 ~~~~~~~~~~~~~~~~~~--~~~~~~S 146 (167)
T cd01867 122 EKRVVSKEEGEALADEYG--IKFLETS 146 (167)
T ss_pred cccCCCHHHHHHHHHHcC--CEEEEEe
Confidence 432 2233444444332 4556554
No 213
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=77.43 E-value=9.6 Score=30.32 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=26.7
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHH----hhcCEEEEccCCCCCh
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV----AYADRIILNKIDLVTE 110 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi----~~Ad~ivlnK~D~~~~ 110 (284)
..+.++.|+|+...... ... ..+..++ ...=++|+||+|+.+.
T Consensus 77 ~~d~~llv~d~~~~~s~-~~~------~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 77 ACDVACLVYDSSDPKSF-SYC------AEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred cCCEEEEEEeCCCHHHH-HHH------HHHHHHhccCCCCeEEEEEEccccccc
Confidence 67788999999775332 211 1223333 2455788899998653
No 214
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=77.40 E-value=13 Score=29.14 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=43.6
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---Hhh---cCEEEEccC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAY---ADRIILNKI 105 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~---Ad~ivlnK~ 105 (284)
..+.+++|......+... .+ -..+++|.|+|..+... +... ...... +.. .=+||.||+
T Consensus 53 l~i~Dt~G~~~~~~~~~~-----~~---~~~~~~ilv~d~~~~~s-~~~~------~~~~~~~~~~~~~~~~iiiv~nK~ 117 (166)
T cd04122 53 LQIWDTAGQERFRAVTRS-----YY---RGAAGALMVYDITRRST-YNHL------SSWLTDARNLTNPNTVIFLIGNKA 117 (166)
T ss_pred EEEEECCCcHHHHHHHHH-----Hh---cCCCEEEEEEECCCHHH-HHHH------HHHHHHHHHhCCCCCeEEEEEECc
Confidence 356677775443332221 11 24678999999987442 1211 111222 211 236778999
Q ss_pred CCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 106 DLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 106 D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
|+.+..+ .+..++..+.. ..++++++
T Consensus 118 Dl~~~~~~~~~~~~~~~~~~--~~~~~e~S 145 (166)
T cd04122 118 DLEAQRDVTYEEAKQFADEN--GLLFLECS 145 (166)
T ss_pred ccccccCcCHHHHHHHHHHc--CCEEEEEE
Confidence 9865432 23444444433 35666665
No 215
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.32 E-value=11 Score=33.83 Aligned_cols=95 Identities=18% Similarity=0.324 Sum_probs=54.3
Q ss_pred cCCCCEEEEecCCCCC-cHHHHHHhcccccccceee------eceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCE
Q 023301 27 QGQFDHIVIETTGLAK-PAPVIETFCTDELVSQYVK------LDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADR 99 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~-p~~i~~~l~~~~~l~~~~~------l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ 99 (284)
..++|+|+|.|.|=-+ =..+++.|.. +.+... -.-++.|+||..-...+.+. ......-.-|-
T Consensus 219 ar~~DvvliDTAGRLhnk~nLM~EL~K---I~rV~~k~~~~ap~e~llvlDAttGqnal~QA-------k~F~eav~l~G 288 (340)
T COG0552 219 ARGIDVVLIDTAGRLHNKKNLMDELKK---IVRVIKKDDPDAPHEILLVLDATTGQNALSQA-------KIFNEAVGLDG 288 (340)
T ss_pred HcCCCEEEEeCcccccCchhHHHHHHH---HHHHhccccCCCCceEEEEEEcccChhHHHHH-------HHHHHhcCCce
Confidence 3689999999999655 3344444431 111111 12267788999877665431 22344555789
Q ss_pred EEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 100 IILNKIDLVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 100 ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
||++|.|-.. .--.+....+.++ .||...-.|
T Consensus 289 iIlTKlDgtA--KGG~il~I~~~l~--~PI~fiGvG 320 (340)
T COG0552 289 IILTKLDGTA--KGGIILSIAYELG--IPIKFIGVG 320 (340)
T ss_pred EEEEecccCC--CcceeeeHHHHhC--CCEEEEeCC
Confidence 9999999422 2223333344444 455554444
No 216
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=77.13 E-value=17 Score=30.69 Aligned_cols=87 Identities=11% Similarity=0.170 Sum_probs=58.3
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEE-ccCCCCCh
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIIL-NKIDLVTE 110 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivl-nK~D~~~~ 110 (284)
+|+|| |.++...|-+.|+. -.+...|.+. +-.+|-.++. ..+.+-.+.||+|+| +-+|.+.-
T Consensus 10 RIiVE--GAsDvE~iSkalQr-~aLG~eYnIT-isSIiPTT~~-------------eIA~raaeGADlvlIATDaD~~GR 72 (290)
T COG4026 10 RIIVE--GASDVEVISKALQR-LALGSEYNIT-ISSIIPTTNV-------------EIAKRAAEGADLVLIATDADRVGR 72 (290)
T ss_pred EEEee--ccchHHHHHHHHHH-hhhcccceeE-EEeeccCchH-------------HHHHHhhccCCEEEEeecCcchhH
Confidence 47776 77888877777653 3455556553 3344444442 234677888999988 78888887
Q ss_pred hHHHHHHHHHHHhCCCCceeeeccC
Q 023301 111 TELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 111 ~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
+-.+++.+.++..-.+..-....+|
T Consensus 73 eLA~kf~eeLrg~VGhiERmK~PiG 97 (290)
T COG4026 73 ELAEKFFEELRGMVGHIERMKIPIG 97 (290)
T ss_pred HHHHHHHHHHHHhhhhhheeccCCC
Confidence 7778888888887766555555555
No 217
>PLN00043 elongation factor 1-alpha; Provisional
Probab=76.79 E-value=6.7 Score=37.01 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=46.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccc--hHHhhhhcCCccchHH-HHHHHhhcC-EEEEccC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKH--AMQHLNEVKPRFVVNE-AVEQVAYAD-RIILNKI 105 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~--~~~~l~~~~~~~~~~~-~~~Qi~~Ad-~ivlnK~ 105 (284)
.-+-+|+++|-.+... .++ ......+..|.|||+.. |..-+.. ........ +...+...- +|++||+
T Consensus 85 ~~i~liDtPGh~df~~--~~~------~g~~~aD~aIlVVda~~G~~e~g~~~-~~qT~eh~~~~~~~gi~~iIV~vNKm 155 (447)
T PLN00043 85 YYCTVIDAPGHRDFIK--NMI------TGTSQADCAVLIIDSTTGGFEAGISK-DGQTREHALLAFTLGVKQMICCCNKM 155 (447)
T ss_pred EEEEEEECCCHHHHHH--HHH------hhhhhccEEEEEEEcccCceecccCC-CchHHHHHHHHHHcCCCcEEEEEEcc
Confidence 4567889999554322 111 12235677899999986 2100000 00000011 123344445 5578999
Q ss_pred CCCC----hhHHH----HHHHHHHHhC--C-CCceeeec
Q 023301 106 DLVT----ETELG----SLTERIKHIN--A-MAPVKLAK 133 (284)
Q Consensus 106 D~~~----~~~~~----~~~~~l~~~n--p-~a~i~~~~ 133 (284)
|+.+ .+.++ +++.+++++. + +.+++..+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiS 194 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPIS 194 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEe
Confidence 9863 23333 3444444332 2 35666654
No 218
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=76.56 E-value=7.8 Score=30.60 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=37.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivln 103 (284)
.++.+++++|........... + -..+.++.|+|+..... +.+.. ..+...+ ...-++++|
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~-----~---~~~~~ii~v~D~~~~~~-~~~~~-----~~~~~~~~~~~~~~~p~ivv~n 123 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNY-----F---ENTDCLIYVIDSADKKR-LEEAG-----AELVELLEEEKLAGVPVLVFAN 123 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHH-----h---cCCCEEEEEEeCCCHHH-HHHHH-----HHHHHHHhChhhcCCCEEEEEE
Confidence 345566777754322221111 1 13456899999986432 11110 1111111 234567789
Q ss_pred cCCCCChhHHHHHHH
Q 023301 104 KIDLVTETELGSLTE 118 (284)
Q Consensus 104 K~D~~~~~~~~~~~~ 118 (284)
|+|+.+....+.+.+
T Consensus 124 K~D~~~~~~~~~i~~ 138 (173)
T cd04155 124 KQDLATAAPAEEIAE 138 (173)
T ss_pred CCCCccCCCHHHHHH
Confidence 999976554444443
No 219
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=76.33 E-value=12 Score=29.01 Aligned_cols=88 Identities=14% Similarity=0.183 Sum_probs=44.9
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~ 108 (284)
..+++++|...-..+.... + -..+.+|.|+|+.+.... .+. ..++ .. ..+.. ..-+|+.||+|+.
T Consensus 51 l~l~D~~G~~~~~~~~~~~-----~---~~~~~~i~v~d~~~~~s~-~~~-~~~~-~~-~~~~~~~~~~iivv~nK~D~~ 118 (161)
T cd04113 51 LQIWDTAGQERFRSVTRSY-----Y---RGAAGALLVYDITNRTSF-EAL-PTWL-SD-ARALASPNIVVILVGNKSDLA 118 (161)
T ss_pred EEEEECcchHHHHHhHHHH-----h---cCCCEEEEEEECCCHHHH-HHH-HHHH-HH-HHHhCCCCCeEEEEEEchhcc
Confidence 3466888864333222211 1 246789999999885432 211 0111 11 12222 2356778999986
Q ss_pred ChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 109 TETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 109 ~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
...+ .+......+..+ .++++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~--~~~~~~S 143 (161)
T cd04113 119 DQREVTFLEASRFAQENG--LLFLETS 143 (161)
T ss_pred hhccCCHHHHHHHHHHcC--CEEEEEE
Confidence 5322 234444455443 5666654
No 220
>COG1162 Predicted GTPases [General function prediction only]
Probab=76.15 E-value=5.7 Score=35.23 Aligned_cols=41 Identities=29% Similarity=0.379 Sum_probs=24.8
Q ss_pred HHHhhcCEEEEccCCCCChhHHHHHHHHHHHhC-CCCceeeec
Q 023301 92 EQVAYADRIILNKIDLVTETELGSLTERIKHIN-AMAPVKLAK 133 (284)
Q Consensus 92 ~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~n-p~a~i~~~~ 133 (284)
.--...=+|+|||+|++++++... ++..+... -..+++.++
T Consensus 107 e~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~~~s 148 (301)
T COG1162 107 EAGGIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVLFVS 148 (301)
T ss_pred HHcCCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEEEec
Confidence 333445688999999999888775 33333222 234555554
No 221
>PRK12740 elongation factor G; Reviewed
Probab=76.13 E-value=5.7 Score=39.46 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=47.4
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+.++.+|+|+|..+....... . .-..+.++.|+|+........ ..+.. ........-+||+||+|+.
T Consensus 59 ~~~i~liDtPG~~~~~~~~~~-----~---l~~aD~vllvvd~~~~~~~~~----~~~~~-~~~~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 59 GHKINLIDTPGHVDFTGEVER-----A---LRVLDGAVVVVCAVGGVEPQT----ETVWR-QAEKYGVPRIIFVNKMDRA 125 (668)
T ss_pred CEEEEEEECCCcHHHHHHHHH-----H---HHHhCeEEEEEeCCCCcCHHH----HHHHH-HHHHcCCCEEEEEECCCCC
Confidence 567899999998764322111 1 125678999999977432110 00101 1222345678999999987
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
.. ....+.+.+++.
T Consensus 126 ~~-~~~~~~~~l~~~ 139 (668)
T PRK12740 126 GA-DFFRVLAQLQEK 139 (668)
T ss_pred CC-CHHHHHHHHHHH
Confidence 53 345555666654
No 222
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=75.55 E-value=7 Score=31.58 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=34.5
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH---HHhhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE---QVAYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~---Qi~~Ad~ivlnK~D~ 107 (284)
...+.+++|......+...+ .-..+.++.|+|+...... .... ..+ ..+.. .....=+||+||+|+
T Consensus 53 ~l~l~Dt~G~~~~~~~~~~~--------~~~~d~ii~v~D~~~~~~~-~~~~-~~~-~~i~~~~~~~~~p~iiv~NK~D~ 121 (183)
T cd04152 53 TFHFWDVGGQEKLRPLWKSY--------TRCTDGIVFVVDSVDVERM-EEAK-TEL-HKITRFSENQGVPVLVLANKQDL 121 (183)
T ss_pred EEEEEECCCcHhHHHHHHHH--------hccCCEEEEEEECCCHHHH-HHHH-HHH-HHHHhhhhcCCCcEEEEEECcCc
Confidence 45567778764433322221 1146778999999875321 1100 000 01111 112345788899998
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
..
T Consensus 122 ~~ 123 (183)
T cd04152 122 PN 123 (183)
T ss_pred cc
Confidence 64
No 223
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=75.18 E-value=11 Score=35.05 Aligned_cols=72 Identities=17% Similarity=0.303 Sum_probs=49.7
Q ss_pred cCCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 27 QGQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
...+|+|||.|.|=.+-. ++.+.+. .+...+.-+-++.|||+..-...... ...+.+++.. .=||++|.
T Consensus 180 ~~~~DvvIvDTAGRl~ide~Lm~El~---~Ik~~~~P~E~llVvDam~GQdA~~~------A~aF~e~l~i-tGvIlTKl 249 (451)
T COG0541 180 EEGYDVVIVDTAGRLHIDEELMDELK---EIKEVINPDETLLVVDAMIGQDAVNT------AKAFNEALGI-TGVILTKL 249 (451)
T ss_pred HcCCCEEEEeCCCcccccHHHHHHHH---HHHhhcCCCeEEEEEecccchHHHHH------HHHHhhhcCC-ceEEEEcc
Confidence 367899999999987754 4444442 34566777889999999886654322 2345566644 45788999
Q ss_pred CCC
Q 023301 106 DLV 108 (284)
Q Consensus 106 D~~ 108 (284)
|--
T Consensus 250 DGd 252 (451)
T COG0541 250 DGD 252 (451)
T ss_pred cCC
Confidence 963
No 224
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=75.06 E-value=3 Score=33.14 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=24.7
Q ss_pred CchHHHHHHHHHHhhcCCCCEEEEecCCCCCcH
Q 023301 12 RGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPA 44 (284)
Q Consensus 12 ~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~ 44 (284)
+..|...|.+-+. .++++|+|||+.+++-.
T Consensus 17 ~e~FE~eLe~ALe---~~~~~IVIEP~~LGdet 46 (165)
T PF14972_consen 17 HEQFEAELERALE---AKVSYIVIEPTRLGDET 46 (165)
T ss_pred HHHHHHHHHHHHH---hCCCEEEECCccccHHH
Confidence 4567888888886 68999999999999843
No 225
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=75.00 E-value=13 Score=28.87 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=34.6
Q ss_pred EEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCCCCC
Q 023301 33 IVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKIDLVT 109 (284)
Q Consensus 33 iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D~~~ 109 (284)
-|.+++|.-....+..... -..+.++.|.|...... +.+.. .+. ..+.+. -...-+||.||+|+.+
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~--------~~ad~~i~v~d~~~~~s-~~~~~-~~~-~~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 52 EILDTAGTEQFASMRDLYI--------KNGQGFIVVYSLVNQQT-FQDIK-PMR-DQIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred EEEECCCcccccchHHHHH--------hhCCEEEEEEECCCHHH-HHHHH-HHH-HHHHHhcCCCCCCEEEEEECccchh
Confidence 3578888655544333221 23567888888877432 12110 011 111111 1234578889999865
Q ss_pred h
Q 023301 110 E 110 (284)
Q Consensus 110 ~ 110 (284)
.
T Consensus 121 ~ 121 (163)
T cd04176 121 E 121 (163)
T ss_pred c
Confidence 3
No 226
>PLN00223 ADP-ribosylation factor; Provisional
Probab=74.99 E-value=16 Score=29.50 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=37.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHH-HHHHhh-cCEEEEccCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEA-VEQVAY-ADRIILNKIDLV 108 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~-~~Qi~~-Ad~ivlnK~D~~ 108 (284)
...+.+++|-.....+.... + -..+.+|.|+|+...... .+.. ..+...+ ..++.. .=+||.||+|+.
T Consensus 62 ~~~i~D~~Gq~~~~~~~~~~-----~---~~a~~iI~V~D~s~~~s~-~~~~-~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 62 SFTVWDVGGQDKIRPLWRHY-----F---QNTQGLIFVVDSNDRDRV-VEAR-DELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred EEEEEECCCCHHHHHHHHHH-----h---ccCCEEEEEEeCCcHHHH-HHHH-HHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 34566777753333222211 1 235789999999874432 1110 0010111 012222 345666999986
Q ss_pred ChhHHHHHHHHH
Q 023301 109 TETELGSLTERI 120 (284)
Q Consensus 109 ~~~~~~~~~~~l 120 (284)
+....+.+.+.+
T Consensus 132 ~~~~~~~~~~~l 143 (181)
T PLN00223 132 NAMNAAEITDKL 143 (181)
T ss_pred CCCCHHHHHHHh
Confidence 544444444433
No 227
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=74.81 E-value=4.5 Score=37.88 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=49.6
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc---CEEEEccC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA---DRIILNKI 105 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A---d~ivlnK~ 105 (284)
..-..++.|-|+=+-..+++.+=-+...+..-.-+-|+.|+|+...... .+ ....+ .... -++|+||+
T Consensus 264 G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~---~d-----~~~~~-~~~~~~~~i~v~NK~ 334 (454)
T COG0486 264 GIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDK---ED-----LALIE-LLPKKKPIIVVLNKA 334 (454)
T ss_pred CEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCch---hh-----HHHHH-hcccCCCEEEEEech
Confidence 4456788999999988888765222223334467779999999885211 11 12233 2222 38888999
Q ss_pred CCCChhHHHHH
Q 023301 106 DLVTETELGSL 116 (284)
Q Consensus 106 D~~~~~~~~~~ 116 (284)
|+.++.....+
T Consensus 335 DL~~~~~~~~~ 345 (454)
T COG0486 335 DLVSKIELESE 345 (454)
T ss_pred hcccccccchh
Confidence 99887664433
No 228
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.31 E-value=29 Score=32.52 Aligned_cols=93 Identities=20% Similarity=0.315 Sum_probs=52.2
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhccccccc-ceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh--cCEEEEc
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTDELVS-QYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY--ADRIILN 103 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~-~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~--Ad~ivln 103 (284)
.++|+|||++.|...-. ..+..|.. .+. .... ..++.|+++..-...+.+ +..+... .+-+|+|
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~--ll~~~~~~-~~~~LVl~a~~~~~~l~~---------~~~~f~~~~~~~vI~T 365 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKA--LIEFSGEP-IDVYLVLSATTKYEDLKD---------IYKHFSRLPLDGLIFT 365 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHH--HHhccCCC-CeEEEEEECCCCHHHHHH---------HHHHhCCCCCCEEEEe
Confidence 35899999999997542 11111110 111 1112 246778888664443322 2233332 4669999
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCceeeeccCC
Q 023301 104 KIDLVTETELGSLTERIKHINAMAPVKLAKYGS 136 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~ 136 (284)
|.|.... ...+...+... ..++...+.|+
T Consensus 366 KlDet~~--~G~i~~~~~~~--~lPv~yit~Gq 394 (424)
T PRK05703 366 KLDETSS--LGSILSLLIES--GLPISYLTNGQ 394 (424)
T ss_pred ccccccc--ccHHHHHHHHH--CCCEEEEeCCC
Confidence 9998542 34555555544 35777777775
No 229
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=74.23 E-value=38 Score=32.82 Aligned_cols=94 Identities=15% Similarity=0.287 Sum_probs=52.8
Q ss_pred CCCCEEEEecCCCCCcHHH-HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKPAPV-IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i-~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
.++|+|||+|.|+..-... .+.|. .+..... ...+.|+++..-...+.+. ... ..++ .-+-+|+||.|
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~---~L~aa~~-~a~lLVLpAtss~~Dl~ei-----i~~-f~~~-~~~gvILTKlD 495 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLN---WLRAARQ-VTSLLVLPANAHFSDLDEV-----VRR-FAHA-KPQGVVLTKLD 495 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHH---HHHHhhc-CCcEEEEECCCChhHHHHH-----HHH-HHhh-CCeEEEEecCc
Confidence 4689999999999764322 22221 1111112 2467888887633333221 111 1222 45789999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeeccCC
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKYGS 136 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~g~ 136 (284)
... .+-.+...+... +.+|...+.|+
T Consensus 496 Et~--~lG~aLsv~~~~--~LPI~yvt~GQ 521 (559)
T PRK12727 496 ETG--RFGSALSVVVDH--QMPITWVTDGQ 521 (559)
T ss_pred Ccc--chhHHHHHHHHh--CCCEEEEeCCC
Confidence 854 345555555544 36777777774
No 230
>PTZ00369 Ras-like protein; Provisional
Probab=74.12 E-value=24 Score=28.52 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=49.6
Q ss_pred EEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCCCh
Q 023301 34 VIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLVTE 110 (284)
Q Consensus 34 iIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~~~ 110 (284)
+.+++|..+...+..... -..++++.|+|...-.. +.+.. .+. ..+..... ..=+||.||+|+.+.
T Consensus 57 i~Dt~G~~~~~~l~~~~~--------~~~d~iilv~D~s~~~s-~~~~~-~~~-~~i~~~~~~~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 57 ILDTAGQEEYSAMRDQYM--------RTGQGFLCVYSITSRSS-FEEIA-SFR-EQILRVKDKDRVPMILVGNKCDLDSE 125 (189)
T ss_pred EEeCCCCccchhhHHHHh--------hcCCEEEEEEECCCHHH-HHHHH-HHH-HHHHHhcCCCCCCEEEEEECcccccc
Confidence 679999888766543321 14577899999877543 22210 011 11111111 123678899998543
Q ss_pred hH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 111 TE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 111 ~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.. .....+..+..+ .++++++. .......++
T Consensus 126 ~~i~~~~~~~~~~~~~--~~~~e~Sak~~~gi~~~~ 159 (189)
T PTZ00369 126 RQVSTGEGQELAKSFG--IPFLETSAKQRVNVDEAF 159 (189)
T ss_pred cccCHHHHHHHHHHhC--CEEEEeeCCCCCCHHHHH
Confidence 22 222333344433 46666653 334555444
No 231
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=74.03 E-value=32 Score=26.85 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=38.7
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEccCCCCChh--HHHHHHHHHHHhCCCCceeee
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILNKIDLVTET--ELGSLTERIKHINAMAPVKLA 132 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivlnK~D~~~~~--~~~~~~~~l~~~np~a~i~~~ 132 (284)
..+.+|.|+|+..... +.+.. .+ ...+..+. ...=++|+||+|+..+. ..+.+.+..+.. ...+++.+
T Consensus 72 ~~d~~i~v~d~~~~~~-~~~~~-~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~ 147 (172)
T cd01862 72 GADCCVLVYDVTNPKS-FESLD-SW-RDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN-GNIPYFET 147 (172)
T ss_pred CCCEEEEEEECCCHHH-HHHHH-HH-HHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc-CCceEEEE
Confidence 3578999999876432 22110 11 11222222 22336677999997322 234444444433 23567665
Q ss_pred cc-CCCChhhhh
Q 023301 133 KY-GSVDMDFVL 143 (284)
Q Consensus 133 ~~-g~v~~~~l~ 143 (284)
+. .......++
T Consensus 148 Sa~~~~gv~~l~ 159 (172)
T cd01862 148 SAKEAINVEQAF 159 (172)
T ss_pred ECCCCCCHHHHH
Confidence 43 233444443
No 232
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=73.98 E-value=11 Score=32.46 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=39.0
Q ss_pred CCCEEEEecCCCCCc------HHHHHHhcc--cccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---Hhhc
Q 023301 29 QFDHIVIETTGLAKP------APVIETFCT--DELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYA 97 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p------~~i~~~l~~--~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~A 97 (284)
.|+..||.++|+... ..+...+.. ...+... =+-+++|+|+..-.. +. + . ..+.++ ...-
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~---~~-d--~-l~ia~~ld~~~~r 194 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLA---NS-D--A-LKLAKEVDPQGER 194 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCC---ch-h--H-HHHHHHHHHcCCc
Confidence 399999999999742 333222211 0112111 124789999875221 10 0 0 112223 3344
Q ss_pred CEEEEccCCCCCh
Q 023301 98 DRIILNKIDLVTE 110 (284)
Q Consensus 98 d~ivlnK~D~~~~ 110 (284)
-++|+||.|..+.
T Consensus 195 ti~ViTK~D~~~~ 207 (240)
T smart00053 195 TIGVITKLDLMDE 207 (240)
T ss_pred EEEEEECCCCCCc
Confidence 5679999999764
No 233
>PRK00093 GTP-binding protein Der; Reviewed
Probab=73.57 E-value=13 Score=34.77 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=41.0
Q ss_pred CCCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~ 107 (284)
..+..+++|+|...... +.+.+.. ......-..+.++.|+|+..-...... .+. ....+....=++|+||+|+
T Consensus 48 ~~~~~liDT~G~~~~~~~~~~~~~~-~~~~~~~~ad~il~vvd~~~~~~~~~~----~~~-~~l~~~~~piilv~NK~D~ 121 (435)
T PRK00093 48 GREFILIDTGGIEPDDDGFEKQIRE-QAELAIEEADVILFVVDGRAGLTPADE----EIA-KILRKSNKPVILVVNKVDG 121 (435)
T ss_pred CcEEEEEECCCCCCcchhHHHHHHH-HHHHHHHhCCEEEEEEECCCCCCHHHH----HHH-HHHHHcCCcEEEEEECccC
Confidence 35678999999986222 2222111 011112356789999999763221110 111 1123334566888999997
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
.+
T Consensus 122 ~~ 123 (435)
T PRK00093 122 PD 123 (435)
T ss_pred cc
Confidence 65
No 234
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=73.56 E-value=26 Score=27.83 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=34.5
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc---CEEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA---DRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A---d~ivlnK~D~~ 108 (284)
.-+.+++|.-....+... .+ -..+.++.|.|+...... ... ..++ ..+.++.... =++|.||+|+.
T Consensus 51 l~i~Dt~G~~~~~~~~~~-----~~---~~ad~~ilv~d~~~~~s~-~~~-~~~~-~~~~~~~~~~~~~iilVgnK~Dl~ 119 (170)
T cd04108 51 LQLWDTAGQERFKCIAST-----YY---RGAQAIIIVFDLTDVASL-EHT-RQWL-EDALKENDPSSVLLFLVGTKKDLS 119 (170)
T ss_pred EEEEeCCChHHHHhhHHH-----Hh---cCCCEEEEEEECcCHHHH-HHH-HHHH-HHHHHhcCCCCCeEEEEEEChhcC
Confidence 345677776443332221 11 256778999999773322 111 0111 1111111111 26788999996
Q ss_pred ChhH
Q 023301 109 TETE 112 (284)
Q Consensus 109 ~~~~ 112 (284)
+..+
T Consensus 120 ~~~~ 123 (170)
T cd04108 120 SPAQ 123 (170)
T ss_pred cccc
Confidence 5433
No 235
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=73.56 E-value=18 Score=28.25 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=36.6
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-----hcCEEEEccC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-----YADRIILNKI 105 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-----~Ad~ivlnK~ 105 (284)
...+++++|.-....+... . .-..+.++.|+|+.+....... . ..+...+. ..=++|.||+
T Consensus 49 ~l~~~D~~g~~~~~~~~~~-----~---~~~~~~~i~v~d~~~~~s~~~~-~-----~~~~~~~~~~~~~~p~ivv~nK~ 114 (171)
T cd00157 49 NLGLWDTAGQEEYDRLRPL-----S---YPNTDVFLICFSVDSPSSFENV-K-----TKWIPEIRHYCPNVPIILVGTKI 114 (171)
T ss_pred EEEEEeCCCcccccccchh-----h---cCCCCEEEEEEECCCHHHHHHH-H-----HHHHHHHHhhCCCCCEEEEEccH
Confidence 3568888886654322111 1 1246789999999874332111 0 11112221 3347888999
Q ss_pred CCCChh
Q 023301 106 DLVTET 111 (284)
Q Consensus 106 D~~~~~ 111 (284)
|+.+..
T Consensus 115 Dl~~~~ 120 (171)
T cd00157 115 DLRDDE 120 (171)
T ss_pred Hhhhch
Confidence 986654
No 236
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=73.44 E-value=26 Score=27.74 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=33.9
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-----hcCEEEEccCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-----YADRIILNKID 106 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-----~Ad~ivlnK~D 106 (284)
..+++++|.-....+.. .. .-..+.+|.|.|..+-... .+.. ..+..++. ..=+++.||+|
T Consensus 50 ~~i~Dt~G~~~~~~~~~-----~~---~~~a~~~i~v~d~~~~~sf-~~~~-----~~~~~~~~~~~~~~piilv~nK~D 115 (173)
T cd04130 50 LQLCDTAGQDEFDKLRP-----LC---YPDTDVFLLCFSVVNPSSF-QNIS-----EKWIPEIRKHNPKAPIILVGTQAD 115 (173)
T ss_pred EEEEECCCChhhccccc-----cc---cCCCcEEEEEEECCCHHHH-HHHH-----HHHHHHHHhhCCCCCEEEEeeChh
Confidence 45678888744433211 11 1245788999988764321 1110 11122222 23378889999
Q ss_pred CCCh
Q 023301 107 LVTE 110 (284)
Q Consensus 107 ~~~~ 110 (284)
+.+.
T Consensus 116 l~~~ 119 (173)
T cd04130 116 LRTD 119 (173)
T ss_pred hccC
Confidence 8653
No 237
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=72.91 E-value=34 Score=28.35 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=49.3
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh--------c-CEEE
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY--------A-DRII 101 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~--------A-d~iv 101 (284)
...|.+++|-..+..+...+. -..+.+|.|+|..+.... .+. .....++.. . =++|
T Consensus 51 ~~~i~Dt~G~~~~~~l~~~~~--------~~ad~iilV~D~t~~~s~-~~~------~~w~~~l~~~~~~~~~~~piilV 115 (215)
T cd04109 51 TLQVWDIGGQSIGGKMLDKYI--------YGAHAVFLVYDVTNSQSF-ENL------EDWYSMVRKVLKSSETQPLVVLV 115 (215)
T ss_pred EEEEEECCCcHHHHHHHHHHh--------hcCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhccccCCCceEEEE
Confidence 345678888655555444331 256789999999875432 221 111222221 1 2567
Q ss_pred EccCCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 102 LNKIDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 102 lnK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.||+|+..... .+..+++.+.. . .+.+.++. .......++
T Consensus 116 gNK~DL~~~~~v~~~~~~~~~~~~-~-~~~~~iSAktg~gv~~lf 158 (215)
T cd04109 116 GNKTDLEHNRTVKDDKHARFAQAN-G-MESCLVSAKTGDRVNLLF 158 (215)
T ss_pred EECcccccccccCHHHHHHHHHHc-C-CEEEEEECCCCCCHHHHH
Confidence 79999964322 12333444332 2 45555543 233455554
No 238
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=72.66 E-value=6.8 Score=33.48 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=38.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEccc--chHHhhhhcCCccchHHHHHHHhhc-CEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSK--HAMQHLNEVKPRFVVNEAVEQVAYA-DRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~--~~~~~l~~~~~~~~~~~~~~Qi~~A-d~ivlnK~D~ 107 (284)
..=+.+++|--+..+..-....+.. .-.+.++|.|+|+. .+.+.+.... ..+ ..+.+-=..| =.|++.|+|+
T Consensus 49 ~l~iwD~pGq~~~~~~~~~~~~~~i---f~~v~~LIyV~D~qs~~~~~~l~~~~-~~i-~~l~~~sp~~~v~vfiHK~D~ 123 (232)
T PF04670_consen 49 PLNIWDCPGQDDFMENYFNSQREEI---FSNVGVLIYVFDAQSDDYDEDLAYLS-DCI-EALRQYSPNIKVFVFIHKMDL 123 (232)
T ss_dssp EEEEEEE-SSCSTTHTTHTCCHHHH---HCTESEEEEEEETT-STCHHHHHHHH-HHH-HHHHHHSTT-EEEEEEE-CCC
T ss_pred EEEEEEcCCccccccccccccHHHH---HhccCEEEEEEEcccccHHHHHHHHH-HHH-HHHHHhCCCCeEEEEEeeccc
Confidence 4456688888776553211111111 22677899999998 3333332210 000 1111111122 2477899999
Q ss_pred CChhHHHHH
Q 023301 108 VTETELGSL 116 (284)
Q Consensus 108 ~~~~~~~~~ 116 (284)
.+++....+
T Consensus 124 l~~~~r~~~ 132 (232)
T PF04670_consen 124 LSEDEREEI 132 (232)
T ss_dssp S-HHHHHHH
T ss_pred CCHHHHHHH
Confidence 987765444
No 239
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=72.13 E-value=16 Score=29.10 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=49.0
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh----hcCEEEEccCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA----YADRIILNKID 106 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~----~Ad~ivlnK~D 106 (284)
..-+++++|......+.... + -..+++|.|+|..+-... .+.. .+. ....+.. ..=++|.||+|
T Consensus 51 ~l~i~Dt~G~~~~~~l~~~~-----~---~~~d~~ilv~d~~~~~Sf-~~~~-~~~--~~i~~~~~~~~~piilvgNK~D 118 (172)
T cd04141 51 LLDILDTAGQAEFTAMRDQY-----M---RCGEGFIICYSVTDRHSF-QEAS-EFK--KLITRVRLTEDIPLVLVGNKVD 118 (172)
T ss_pred EEEEEeCCCchhhHHHhHHH-----h---hcCCEEEEEEECCchhHH-HHHH-HHH--HHHHHhcCCCCCCEEEEEEChh
Confidence 34466888876654433322 1 235678888888764432 1110 010 1122322 23378889999
Q ss_pred CCChhHH--HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 107 LVTETEL--GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~~~--~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+..++ +...++.++. .+++++++. .......++
T Consensus 119 l~~~~~v~~~~~~~~a~~~--~~~~~e~Sa~~~~~v~~~f 156 (172)
T cd04141 119 LESQRQVTTEEGRNLAREF--NCPFFETSAALRHYIDDAF 156 (172)
T ss_pred hhhcCccCHHHHHHHHHHh--CCEEEEEecCCCCCHHHHH
Confidence 8543222 2233333433 367776653 233455444
No 240
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=72.02 E-value=29 Score=27.13 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=34.4
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEccC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNKI 105 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK~ 105 (284)
.-+++++|.-....+.... .-..+.+|.|.|..+.... .+.. .+. ....++. ..=+||.||+
T Consensus 51 l~i~Dt~G~~~~~~~~~~~--------~~~~~~~ilv~d~~~~~s~-~~~~-~~~--~~i~~~~~~~~~~~piilv~nK~ 118 (165)
T cd04140 51 LQITDTTGSHQFPAMQRLS--------ISKGHAFILVYSVTSKQSL-EELK-PIY--ELICEIKGNNIEKIPIMLVGNKC 118 (165)
T ss_pred EEEEECCCCCcchHHHHHH--------hhcCCEEEEEEECCCHHHH-HHHH-HHH--HHHHHHhcCCCCCCCEEEEEECc
Confidence 3477888876544332211 1134677888888764431 1110 000 1122222 2347888999
Q ss_pred CCCC
Q 023301 106 DLVT 109 (284)
Q Consensus 106 D~~~ 109 (284)
|+..
T Consensus 119 Dl~~ 122 (165)
T cd04140 119 DESH 122 (165)
T ss_pred cccc
Confidence 9965
No 241
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=71.98 E-value=9.6 Score=37.35 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=44.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
..+-||.|+|-++........ + -..+.++.|||+..-.. .+. +..... ..+....-+|++||+|+.+
T Consensus 64 ~kinlIDTPGh~DF~~ev~~~-----l---~~aD~alLVVDa~~G~~--~qT--~~~l~~-a~~~~ip~IVviNKiD~~~ 130 (594)
T TIGR01394 64 TKINIVDTPGHADFGGEVERV-----L---GMVDGVLLLVDASEGPM--PQT--RFVLKK-ALELGLKPIVVINKIDRPS 130 (594)
T ss_pred EEEEEEECCCHHHHHHHHHHH-----H---HhCCEEEEEEeCCCCCc--HHH--HHHHHH-HHHCCCCEEEEEECCCCCC
Confidence 345689999988865332221 1 24678999999975221 110 111111 2233345689999999854
Q ss_pred h---hHHHHHHHHHHH
Q 023301 110 E---TELGSLTERIKH 122 (284)
Q Consensus 110 ~---~~~~~~~~~l~~ 122 (284)
. +.++++.+.+..
T Consensus 131 a~~~~v~~ei~~l~~~ 146 (594)
T TIGR01394 131 ARPDEVVDEVFDLFAE 146 (594)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 2 123444454443
No 242
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=71.49 E-value=20 Score=27.55 Aligned_cols=89 Identities=24% Similarity=0.268 Sum_probs=44.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~ 107 (284)
...+++++|-..+..+.... + -..+.++.|+|..+.... .... .+. .. ..+. ..+-++|+||+|+
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~-----~---~~~~~~i~v~d~~~~~s~-~~~~-~~~-~~-i~~~~~~~~piiiv~nK~D~ 117 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIY-----Y---RDADGAILVYDITDADSF-QKVK-KWI-KE-LKQMRGNNISLVIVGNKIDL 117 (162)
T ss_pred EEEEEECCchHHHHHhhHHH-----h---ccCCEEEEEEECCCHHHH-HHHH-HHH-HH-HHHhCCCCCeEEEEEECccc
Confidence 34567888854443322221 1 246789999998764421 1110 010 11 1222 2456777899998
Q ss_pred CChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 108 VTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
....+ .+.+++..+..+ .+++.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~--~~~~~~s 143 (162)
T cd04123 118 ERQRVVSKSEAEEYAKSVG--AKHFETS 143 (162)
T ss_pred ccccCCCHHHHHHHHHHcC--CEEEEEe
Confidence 75332 234444444443 4455443
No 243
>PRK07560 elongation factor EF-2; Reviewed
Probab=71.33 E-value=7.4 Score=39.15 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=38.6
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+....||.|+|..+...-... ..-..+.+|.|||+..-... ..+.+...+ .+....-++++||+|..
T Consensus 86 ~~~i~liDtPG~~df~~~~~~--------~l~~~D~avlVvda~~g~~~----~t~~~~~~~-~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 86 EYLINLIDTPGHVDFGGDVTR--------AMRAVDGAIVVVDAVEGVMP----QTETVLRQA-LRERVKPVLFINKVDRL 152 (731)
T ss_pred cEEEEEEcCCCccChHHHHHH--------HHHhcCEEEEEEECCCCCCc----cHHHHHHHH-HHcCCCeEEEEECchhh
Confidence 345689999999985432211 11245789999998764221 111111111 11223458999999986
No 244
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=71.11 E-value=5.5 Score=35.47 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=50.4
Q ss_pred cCCCCEEEEecCCCCCcHHHHHHhccc----ccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEE
Q 023301 27 QGQFDHIVIETTGLAKPAPVIETFCTD----ELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIIL 102 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~~i~~~l~~~----~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivl 102 (284)
...-+.||..|+|+-.+..+...-... ......-..+.|++|+|+.+-..++ .++ +...+..=.....++|+
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l---~p~-vl~~l~~ys~ips~lvm 192 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPL---HPR-VLHMLEEYSKIPSILVM 192 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCcc---ChH-HHHHHHHHhcCCceeec
Confidence 357789999999999988765432211 1122344678899999998633322 121 11223344445789999
Q ss_pred ccCCCCCh
Q 023301 103 NKIDLVTE 110 (284)
Q Consensus 103 nK~D~~~~ 110 (284)
||+|....
T Consensus 193 nkid~~k~ 200 (379)
T KOG1423|consen 193 NKIDKLKQ 200 (379)
T ss_pred cchhcchh
Confidence 99998653
No 245
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=70.82 E-value=37 Score=27.27 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=46.1
Q ss_pred EEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh--hc-CEEEEccCCCCC
Q 023301 33 IVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA--YA-DRIILNKIDLVT 109 (284)
Q Consensus 33 iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~--~A-d~ivlnK~D~~~ 109 (284)
-+.+++|......+...+ + -..++++.|+|..+... +.+.. .++ .. ..+.. .. =+++.||+|+.+
T Consensus 52 ~i~Dt~g~~~~~~~~~~~-----~---~~~d~iilv~d~~~~~s-~~~i~-~~~-~~-i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 52 QIWDTNGQERFRSLNNSY-----Y---RGAHGYLLVYDVTDQES-FENLK-FWI-NE-INRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred EEEECCCcHHHHhhHHHH-----c---cCCCEEEEEEECcCHHH-HHHHH-HHH-HH-HHHhCCCCCeEEEEEECCCCcc
Confidence 466888854433322221 1 24678999999977443 22210 011 01 11221 12 266779999874
Q ss_pred hhHH--HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 110 ETEL--GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 110 ~~~~--~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
...+ .....+.+.. ..++++++. ...+...++
T Consensus 120 ~~~v~~~~~~~~~~~~--~~~~~evSa~~~~~i~~~f 154 (188)
T cd04125 120 NKVVDSNIAKSFCDSL--NIPFFETSAKQSINVEEAF 154 (188)
T ss_pred cccCCHHHHHHHHHHc--CCeEEEEeCCCCCCHHHHH
Confidence 3321 2223333322 346666653 234454444
No 246
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=70.44 E-value=46 Score=25.44 Aligned_cols=97 Identities=10% Similarity=0.161 Sum_probs=46.3
Q ss_pred EEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCCCCh
Q 023301 34 VIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDLVTE 110 (284)
Q Consensus 34 iIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~~~~ 110 (284)
+++++|-.....+.... + -..+.++.|+|...... +.+.. .+. ..+.... ...=+||.||+|+.+.
T Consensus 53 i~Dt~G~~~~~~l~~~~-----~---~~~~~~i~v~~~~~~~s-~~~~~-~~~-~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 53 ILDTAGQEEYSAMRDQY-----M---RTGEGFLCVFAINSRKS-FEDIH-TYR-EQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred EEECCCCcchHHHHHHH-----H---hcCCEEEEEEECCCHHH-HHHHH-HHH-HHHHHhcCCCCCCEEEEEECcccccc
Confidence 57888876665544332 1 13456778878765332 12110 011 1111111 1233778899998653
Q ss_pred h-HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 111 T-ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 111 ~-~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
. ......+..+..+ .++++++. .......++
T Consensus 122 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 122 TVSSRQGQDLAKSYG--IPYIETSAKTRQGVEEAF 154 (162)
T ss_pred eecHHHHHHHHHHhC--CeEEEecCCCCCCHHHHH
Confidence 2 1233334444332 45666553 333444444
No 247
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=70.30 E-value=34 Score=27.55 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=24.8
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCCCCh
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDLVTE 110 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~~~~ 110 (284)
..+.++.|+|....... .+. ..++ .. ..+. ...=+||.||+|+.+.
T Consensus 73 ~~d~iilv~d~~~~~s~-~~~-~~~~-~~-i~~~~~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 73 GAKAAIVCYDLTDSSSF-ERA-KFWV-KE-LQNLEEHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred CCCEEEEEEECCCHHHH-HHH-HHHH-HH-HHhcCCCCCEEEEEEccccccc
Confidence 46788999998775332 110 0011 11 1222 1234688899998643
No 248
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=70.02 E-value=45 Score=27.23 Aligned_cols=97 Identities=10% Similarity=0.173 Sum_probs=49.8
Q ss_pred EEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc-CEEEEccCCCCChh-
Q 023301 34 VIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA-DRIILNKIDLVTET- 111 (284)
Q Consensus 34 iIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A-d~ivlnK~D~~~~~- 111 (284)
+.+++|.-....+..... -..+++|.|.|..+.... .+. ..++ ..+..+...+ =+||-||.|+....
T Consensus 59 iwDt~G~~~~~~l~~~~~--------~~ad~illVfD~t~~~Sf-~~~-~~w~-~~i~~~~~~~piilVGNK~DL~~~~~ 127 (189)
T cd04121 59 LWDTSGQGRFCTIFRSYS--------RGAQGIILVYDITNRWSF-DGI-DRWI-KEIDEHAPGVPKILVGNRLHLAFKRQ 127 (189)
T ss_pred EEeCCCcHHHHHHHHHHh--------cCCCEEEEEEECcCHHHH-HHH-HHHH-HHHHHhCCCCCEEEEEECccchhccC
Confidence 456777655444332211 256789999998775432 221 1121 1222222223 35566999985421
Q ss_pred -HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 112 -ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 112 -~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
..+..+++.+..+ .++++++. .......+|
T Consensus 128 v~~~~~~~~a~~~~--~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 128 VATEQAQAYAERNG--MTFFEVSPLCNFNITESF 159 (189)
T ss_pred CCHHHHHHHHHHcC--CEEEEecCCCCCCHHHHH
Confidence 1334455555443 56777763 344555555
No 249
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=69.94 E-value=18 Score=28.55 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=35.1
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-----hhcCEEEEccCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-----AYADRIILNKID 106 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-----~~Ad~ivlnK~D 106 (284)
..+.+++|.-....+.... ....+++|.|+|..+.... .+. .....++ ...=+||.||+|
T Consensus 51 l~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~piiiv~nK~D 115 (166)
T cd00877 51 FNVWDTAGQEKFGGLRDGY--------YIGGQCAIIMFDVTSRVTY-KNV------PNWHRDLVRVCGNIPIVLCGNKVD 115 (166)
T ss_pred EEEEECCCChhhccccHHH--------hcCCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhCCCCcEEEEEEchh
Confidence 3566888875543322211 1246789999999874432 221 1122333 233467789999
Q ss_pred CCC
Q 023301 107 LVT 109 (284)
Q Consensus 107 ~~~ 109 (284)
+..
T Consensus 116 l~~ 118 (166)
T cd00877 116 IKD 118 (166)
T ss_pred ccc
Confidence 963
No 250
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=69.60 E-value=35 Score=28.33 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=45.5
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcC-EEEEcc
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YAD-RIILNK 104 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad-~ivlnK 104 (284)
..+.+++|.-....+.... + -..+.+|.|.|..+... +.+. .....++. ..- +||.||
T Consensus 54 l~i~Dt~G~~~~~~~~~~~-----~---~~~d~iilv~D~~~~~S-f~~l------~~~~~~i~~~~~~~~~~iilvgNK 118 (211)
T cd04111 54 LQLWDTAGQERFRSITRSY-----Y---RNSVGVLLVFDITNRES-FEHV------HDWLEEARSHIQPHRPVFILVGHK 118 (211)
T ss_pred EEEEeCCcchhHHHHHHHH-----h---cCCcEEEEEEECCCHHH-HHHH------HHHHHHHHHhcCCCCCeEEEEEEc
Confidence 4566777754333222111 1 23577899999987533 2221 11122221 111 566799
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+..+ .+...+..+..+ .++++++. ..-....++
T Consensus 119 ~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sak~g~~v~e~f 158 (211)
T cd04111 119 CDLESQRQVTREEAEKLAKDLG--MKYIETSARTGDNVEEAF 158 (211)
T ss_pred cccccccccCHHHHHHHHHHhC--CEEEEEeCCCCCCHHHHH
Confidence 99865322 223334444333 56666653 233444444
No 251
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=69.58 E-value=31 Score=27.58 Aligned_cols=98 Identities=13% Similarity=0.084 Sum_probs=47.4
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-----hcCEEEEccC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-----YADRIILNKI 105 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-----~Ad~ivlnK~ 105 (284)
...+.+++|...-..+... . .-..+.+|.|+|..+... +.+. .......+. ..=+||.||+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~-----~---~~~ad~ii~v~d~~~~~s-~~~~-----~~~~~~~~~~~~~~~piilv~nK~ 115 (187)
T cd04132 50 ELALWDTAGQEEYDRLRPL-----S---YPDVDVLLICYAVDNPTS-LDNV-----EDKWFPEVNHFCPGTPIMLVGLKT 115 (187)
T ss_pred EEEEEECCCchhHHHHHHH-----h---CCCCCEEEEEEECCCHHH-HHHH-----HHHHHHHHHHhCCCCCEEEEEeCh
Confidence 4556688885443332211 1 124578899999977432 2211 011112221 2347777999
Q ss_pred CCCChh------HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 106 DLVTET------ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 106 D~~~~~------~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+.+.. ......+..+..+- .++++++. .......++
T Consensus 116 Dl~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 116 DLRKDKNLDRKVTPAQAESVAKKQGA-FAYLECSAKTMENVEEVF 159 (187)
T ss_pred hhhhCccccCCcCHHHHHHHHHHcCC-cEEEEccCCCCCCHHHHH
Confidence 986532 12334444444332 25566542 234454444
No 252
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=69.47 E-value=25 Score=27.90 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=43.1
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-------hcCEEEEc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-------YADRIILN 103 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-------~Ad~ivln 103 (284)
..-|.+++|.-....+... .+ -..+++|.|.|+.+.... .+. .....++. ..=+||.|
T Consensus 64 ~~~i~Dt~G~~~~~~~~~~-----~~---~~~~~~i~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~~piiiv~n 128 (180)
T cd04127 64 HLQLWDTAGQERFRSLTTA-----FF---RDAMGFLLIFDLTNEQSF-LNV------RNWMSQLQTHAYCENPDIVLCGN 128 (180)
T ss_pred EEEEEeCCChHHHHHHHHH-----Hh---CCCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCCcEEEEEe
Confidence 3446677774433222221 11 246779999999874432 211 11122221 22467779
Q ss_pred cCCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 104 KIDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 104 K~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
|+|+.+... .+...++.++.+ .++++++
T Consensus 129 K~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~S 158 (180)
T cd04127 129 KADLEDQRQVSEEQAKALADKYG--IPYFETS 158 (180)
T ss_pred CccchhcCccCHHHHHHHHHHcC--CeEEEEe
Confidence 999865322 233444444443 4566655
No 253
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.16 E-value=42 Score=31.07 Aligned_cols=93 Identities=22% Similarity=0.268 Sum_probs=54.9
Q ss_pred CCCCEEEEecCCCCCcHH-HHHHhcccccccceeeec-eEEEEEcccchHHhhhhcCCccchHHHHHHHhh--cCEEEEc
Q 023301 28 GQFDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLD-GVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY--ADRIILN 103 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~-~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~--Ad~ivln 103 (284)
.+.|+|||.|.|...-.. -+..+. ..+. ....+ .++.|+||..-...+. ....+... .+-+|++
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~--~~l~-~~~~~~e~~LVlsat~~~~~~~---------~~~~~~~~~~~~~~I~T 320 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMK--ELLN-ACGRDAEFHLAVSSTTKTSDVK---------EIFHQFSPFSYKTVIFT 320 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHH--HHHH-hcCCCCeEEEEEcCCCCHHHHH---------HHHHHhcCCCCCEEEEE
Confidence 568999999999986321 011221 1111 11112 4889999988554432 23345433 7899999
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCceeeeccCC
Q 023301 104 KIDLVTETELGSLTERIKHINAMAPVKLAKYGS 136 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~ 136 (284)
|.|... ..-.+...+... +.|+...+.|+
T Consensus 321 KlDet~--~~G~~l~~~~~~--~~Pi~yit~Gq 349 (388)
T PRK12723 321 KLDETT--CVGNLISLIYEM--RKEVSYVTDGQ 349 (388)
T ss_pred eccCCC--cchHHHHHHHHH--CCCEEEEeCCC
Confidence 999855 344455555444 36776666664
No 254
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=68.96 E-value=53 Score=25.59 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=47.3
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh--h-cCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA--Y-ADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~--~-Ad~ivlnK~D~ 107 (284)
...+.+++|......+.... .-..+.++.|+|...... +.... .++ ..+ .+.. . .=+||.||+|+
T Consensus 51 ~~~l~Dt~g~~~~~~~~~~~--------~~~~~~~l~v~d~~~~~s-~~~~~-~~~-~~i-~~~~~~~~piivv~nK~Dl 118 (165)
T cd01865 51 KLQIWDTAGQERYRTITTAY--------YRGAMGFILMYDITNEES-FNAVQ-DWS-TQI-KTYSWDNAQVILVGNKCDM 118 (165)
T ss_pred EEEEEECCChHHHHHHHHHH--------ccCCcEEEEEEECCCHHH-HHHHH-HHH-HHH-HHhCCCCCCEEEEEECccc
Confidence 34566777765443322211 124667889999876432 22211 111 111 2221 1 24777899999
Q ss_pred CChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+... .+...+..+.++ .++++++. .......++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~ 155 (165)
T cd01865 119 EDERVVSSERGRQLADQLG--FEFFEASAKENINVKQVF 155 (165)
T ss_pred CcccccCHHHHHHHHHHcC--CEEEEEECCCCCCHHHHH
Confidence 65432 233333333332 35666653 233444443
No 255
>PRK12288 GTPase RsgA; Reviewed
Probab=68.70 E-value=7.7 Score=35.30 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=38.8
Q ss_pred eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHh-CCCCceeeecc-CCC
Q 023301 60 VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHI-NAMAPVKLAKY-GSV 137 (284)
Q Consensus 60 ~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~-np~a~i~~~~~-g~v 137 (284)
..++.++.|.+... ...+.. -++++. ........-+||+||+|+.++++...+.++++.+ ....+++.++. ..-
T Consensus 119 ANvD~vlIV~s~~p-~~s~~~-Ldr~L~--~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 119 ANIDQIVIVSAVLP-ELSLNI-IDRYLV--ACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEccEEEEEEeCCC-CCCHHH-HHHHHH--HHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 45777777766532 111110 012221 1223333448899999998765443444444332 22357776553 223
Q ss_pred Chhhhh
Q 023301 138 DMDFVL 143 (284)
Q Consensus 138 ~~~~l~ 143 (284)
..+.|+
T Consensus 195 GideL~ 200 (347)
T PRK12288 195 GLEELE 200 (347)
T ss_pred CHHHHH
Confidence 344443
No 256
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=68.62 E-value=42 Score=28.79 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=49.4
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---------------hh
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---------------AY 96 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---------------~~ 96 (284)
.-|.+++|.-....+-.. . ...-+.+|.|.|..+-.. +.+. ..+.++| ..
T Consensus 50 l~I~Dt~G~~~~~~~~~~-----~---~~~ad~iIlVfdv~~~~S-f~~i------~~~~~~I~~~k~~~~~~~~~~~~~ 114 (247)
T cd04143 50 LDILDTSGNHPFPAMRRL-----S---ILTGDVFILVFSLDNRES-FEEV------CRLREQILETKSCLKNKTKENVKI 114 (247)
T ss_pred EEEEECCCChhhhHHHHH-----H---hccCCEEEEEEeCCCHHH-HHHH------HHHHHHHHHhhcccccccccCCCC
Confidence 346788886554332111 1 124467888888876432 2211 1112233 23
Q ss_pred cCEEEEccCCCCCh--hHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 97 ADRIILNKIDLVTE--TELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 97 Ad~ivlnK~D~~~~--~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.=+||.||+|+... ...+++.+.+...+ ...+++++. .....+.++
T Consensus 115 piIivgNK~Dl~~~~~v~~~ei~~~~~~~~-~~~~~evSAktg~gI~elf 163 (247)
T cd04143 115 PMVICGNKADRDFPREVQRDEVEQLVGGDE-NCAYFEVSAKKNSNLDEMF 163 (247)
T ss_pred cEEEEEECccchhccccCHHHHHHHHHhcC-CCEEEEEeCCCCCCHHHHH
Confidence 44788899999642 23344555544322 356676653 334555554
No 257
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.48 E-value=5.5 Score=31.27 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=29.8
Q ss_pred eceEEEEEcccchHHhhhhcCCccchHHH-HHHHhhcCEEEE-ccCCCCChhHHHHHHHHH
Q 023301 62 LDGVITLVDSKHAMQHLNEVKPRFVVNEA-VEQVAYADRIIL-NKIDLVTETELGSLTERI 120 (284)
Q Consensus 62 l~~vv~vvD~~~~~~~l~~~~~~~~~~~~-~~Qi~~Ad~ivl-nK~D~~~~~~~~~~~~~l 120 (284)
-.++|+|+|+..- ..+++... .+...+ ..|+..+-++|+ ||-|+.+.-..+++.+.+
T Consensus 85 tqglIFV~Dsa~~-dr~eeAr~-ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~l 143 (180)
T KOG0071|consen 85 TQGLIFVVDSADR-DRIEEARN-ELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKL 143 (180)
T ss_pred CceEEEEEeccch-hhHHHHHH-HHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHh
Confidence 3567888888663 33332210 111111 356666655554 888886654455555444
No 258
>PRK05433 GTP-binding protein LepA; Provisional
Probab=68.31 E-value=17 Score=35.76 Aligned_cols=100 Identities=17% Similarity=0.189 Sum_probs=51.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
....|+.|+|..+.......- + -..+.+|.|||+..-.... . ...... .......=++|+||+|+.+
T Consensus 74 ~~lnLiDTPGh~dF~~~v~~s-----l---~~aD~aILVVDas~gv~~q-t---~~~~~~-~~~~~lpiIvViNKiDl~~ 140 (600)
T PRK05433 74 YILNLIDTPGHVDFSYEVSRS-----L---AACEGALLVVDASQGVEAQ-T---LANVYL-ALENDLEIIPVLNKIDLPA 140 (600)
T ss_pred EEEEEEECCCcHHHHHHHHHH-----H---HHCCEEEEEEECCCCCCHH-H---HHHHHH-HHHCCCCEEEEEECCCCCc
Confidence 445789999999876433321 1 2456799999997632110 0 000001 1112334588999999854
Q ss_pred hhHHHHHHHHHHHhC--CCCceeeecc-CCCChhhhh
Q 023301 110 ETELGSLTERIKHIN--AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 110 ~~~~~~~~~~l~~~n--p~a~i~~~~~-g~v~~~~l~ 143 (284)
. ....+.+.++... +...++.++. .......++
T Consensus 141 a-~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll 176 (600)
T PRK05433 141 A-DPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVL 176 (600)
T ss_pred c-cHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHH
Confidence 3 2233333444332 2234555542 333444444
No 259
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=67.82 E-value=16 Score=35.88 Aligned_cols=100 Identities=18% Similarity=0.247 Sum_probs=51.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
....|+.|+|..+....... .+ -..+.+|.|+|+..-... ... ... ..+. +....-++|+||+|+.+
T Consensus 70 ~~l~liDTPG~~dF~~~v~~-----~l---~~aD~aILVvDat~g~~~-qt~--~~~-~~~~-~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSR-----SL---AACEGALLLVDAAQGIEA-QTL--ANV-YLAL-ENDLEIIPVINKIDLPS 136 (595)
T ss_pred EEEEEEECCCcHHHHHHHHH-----HH---HhCCEEEEEecCCCCCCH-hHH--HHH-HHHH-HcCCCEEEEEECcCCCc
Confidence 34579999999986553332 11 245788999999763211 000 000 0111 12234588999999854
Q ss_pred hhHHHHHHHHHHHhCC--CCceeeecc-CCCChhhhh
Q 023301 110 ETELGSLTERIKHINA--MAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 110 ~~~~~~~~~~l~~~np--~a~i~~~~~-g~v~~~~l~ 143 (284)
.. .+.+.+.++.... ...++.+|. .......++
T Consensus 137 ~~-~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Ll 172 (595)
T TIGR01393 137 AD-PERVKKEIEEVIGLDASEAILASAKTGIGIEEIL 172 (595)
T ss_pred cC-HHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHH
Confidence 32 2233333333321 224555542 334444444
No 260
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=67.71 E-value=8.4 Score=36.30 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=39.1
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~ 108 (284)
..++.|+|+.+....++...........-..+.++.|+|+.+.... . ..+..++. ..-++|+||+|+.
T Consensus 253 v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~-~--------~~~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 253 IKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTK-D--------DFLIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred EEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCCh-h--------HHHHHHHhhCCCCEEEEEECccCC
Confidence 4688999997765544322100011122357889999999763211 0 11223332 2347888999996
Q ss_pred Ch
Q 023301 109 TE 110 (284)
Q Consensus 109 ~~ 110 (284)
..
T Consensus 324 ~~ 325 (442)
T TIGR00450 324 IN 325 (442)
T ss_pred Cc
Confidence 54
No 261
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=67.56 E-value=37 Score=26.38 Aligned_cols=99 Identities=13% Similarity=0.143 Sum_probs=47.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~ 107 (284)
..-+++++|......+.... + -..+.+|.|+|....... .+.. .++ .. ..+.. ..=+||.||+|+
T Consensus 53 ~~~l~D~~g~~~~~~~~~~~-----~---~~~~~~i~v~d~~~~~s~-~~~~-~~~-~~-~~~~~~~~~pi~vv~nK~Dl 120 (165)
T cd01868 53 KAQIWDTAGQERYRAITSAY-----Y---RGAVGALLVYDITKKQTF-ENVE-RWL-KE-LRDHADSNIVIMLVGNKSDL 120 (165)
T ss_pred EEEEEeCCChHHHHHHHHHH-----H---CCCCEEEEEEECcCHHHH-HHHH-HHH-HH-HHHhCCCCCeEEEEEECccc
Confidence 44577888865544333221 1 134668999999764432 2110 111 11 11211 233577899998
Q ss_pred CChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+..+ .+...+..+. + ..++++++. .......++
T Consensus 121 ~~~~~~~~~~~~~~~~~-~-~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 121 RHLRAVPTEEAKAFAEK-N-GLSFIETSALDGTNVEEAF 157 (165)
T ss_pred cccccCCHHHHHHHHHH-c-CCEEEEEECCCCCCHHHHH
Confidence 65322 2333444332 2 356666553 334444443
No 262
>PRK03003 GTP-binding protein Der; Reviewed
Probab=67.40 E-value=6.3 Score=37.40 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=38.3
Q ss_pred CEEEEecCCCCC-cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAK-PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~-p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
...+++|.|... ...+...+.. ......-..+.++.|+|+..-...... .+.. ....-...=++|+||+|+..
T Consensus 87 ~~~l~DT~G~~~~~~~~~~~~~~-~~~~~~~~aD~il~VvD~~~~~s~~~~----~i~~-~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 87 RFTVVDTGGWEPDAKGLQASVAE-QAEVAMRTADAVLFVVDATVGATATDE----AVAR-VLRRSGKPVILAANKVDDER 160 (472)
T ss_pred EEEEEeCCCcCCcchhHHHHHHH-HHHHHHHhCCEEEEEEECCCCCCHHHH----HHHH-HHHHcCCCEEEEEECccCCc
Confidence 467889999863 2222222111 001112256889999999874321110 1111 11223346678889999864
No 263
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=67.32 E-value=13 Score=33.72 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=49.4
Q ss_pred EecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEE-ccCCCC-ChhH
Q 023301 35 IETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIIL-NKIDLV-TETE 112 (284)
Q Consensus 35 IE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivl-nK~D~~-~~~~ 112 (284)
+.|+|=|| .|..++. .....++.|.||-|..-.+ .+.. +. -++..|+..-++||+ ||.|++ +++.
T Consensus 122 ~DCPGHAD--YIKNMIt------GaaqMDGaILVVaatDG~M--PQTr-EH--lLLArQVGV~~ivvfiNKvD~V~d~e~ 188 (449)
T KOG0460|consen 122 TDCPGHAD--YIKNMIT------GAAQMDGAILVVAATDGPM--PQTR-EH--LLLARQVGVKHIVVFINKVDLVDDPEM 188 (449)
T ss_pred CCCCchHH--HHHHhhc------CccccCceEEEEEcCCCCC--cchH-HH--HHHHHHcCCceEEEEEecccccCCHHH
Confidence 45666555 2334433 2345677788887765432 1111 11 135799999888765 999999 5555
Q ss_pred HHHHHHHHHHh------C-CCCceeeec
Q 023301 113 LGSLTERIKHI------N-AMAPVKLAK 133 (284)
Q Consensus 113 ~~~~~~~l~~~------n-p~a~i~~~~ 133 (284)
++-++=.+|++ + .+.||+.-+
T Consensus 189 leLVEmE~RElLse~gf~Gd~~PvI~GS 216 (449)
T KOG0460|consen 189 LELVEMEIRELLSEFGFDGDNTPVIRGS 216 (449)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCeeecc
Confidence 65544444443 2 257787654
No 264
>CHL00189 infB translation initiation factor 2; Provisional
Probab=66.90 E-value=20 Score=36.12 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=51.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D 106 (284)
....|+.|+|-......... ..-..+.+|.|||+..-... . . .....++ ...=+|++||+|
T Consensus 295 ~kItfiDTPGhe~F~~mr~r--------g~~~aDiaILVVDA~dGv~~--Q----T--~E~I~~~k~~~iPiIVViNKiD 358 (742)
T CHL00189 295 QKIVFLDTPGHEAFSSMRSR--------GANVTDIAILIIAADDGVKP--Q----T--IEAINYIQAANVPIIVAINKID 358 (742)
T ss_pred eEEEEEECCcHHHHHHHHHH--------HHHHCCEEEEEEECcCCCCh--h----h--HHHHHHHHhcCceEEEEEECCC
Confidence 56688999997554332221 11245678999998653211 0 0 0112222 234578899999
Q ss_pred CCChhHHHHHHHHHHHh-------CCCCceeeecc-CCCChhhhh
Q 023301 107 LVTETELGSLTERIKHI-------NAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~-------np~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+. ....+.+.++.. ....+++.++. ....+..++
T Consensus 359 l~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLl 402 (742)
T CHL00189 359 KANA-NTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLL 402 (742)
T ss_pred cccc-CHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHH
Confidence 9653 234454444432 12356666653 233444444
No 265
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=66.80 E-value=76 Score=26.64 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=28.5
Q ss_pred CCceeeeeeCc-----hHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHH
Q 023301 3 NNGCLCCTVRG-----DLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIE 48 (284)
Q Consensus 3 ~~GCiCCs~~~-----dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~ 48 (284)
++|++|-|... +|...+.+.++ .... .+.|||||...+..+..
T Consensus 38 sggGVt~SGGEPllq~~fl~~l~~~~k--~~gi-~~~leTnG~~~~~~~~~ 85 (213)
T PRK10076 38 SGGGVTLSGGEVLMQAEFATRFLQRLR--LWGV-SCAIETAGDAPASKLLP 85 (213)
T ss_pred CCCEEEEeCchHHcCHHHHHHHHHHHH--HcCC-CEEEECCCCCCHHHHHH
Confidence 67999988654 44444444444 3333 78899999998776544
No 266
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=65.74 E-value=78 Score=26.36 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCCCEEEEecCCCCCcHHHH-HHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc----CEEEE
Q 023301 28 GQFDHIVIETTGLAKPAPVI-ETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA----DRIIL 102 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~-~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A----d~ivl 102 (284)
.++|+|||.++-.......+ .....+ -..+.++.|+.+...... +. ....+.++.. .-+|+
T Consensus 112 ~~yD~IIiD~pp~~~~~~~l~~~~l~~------~~~~~vllV~~p~~~s~~--~~------~~~l~~l~~~~~~~~glVl 177 (217)
T cd02035 112 GLYDVIVFDTAPTGHTLRLLVRELLTD------PERTSFRLVTLPEKLPLY--ET------ERAITELALYGIPVDAVVV 177 (217)
T ss_pred CCCCEEEECCCCchHHHHHHHHHHccC------CCceEEEEEeCCCccHHH--HH------HHHHHHHHHCCCCCCEEEE
Confidence 45999999998664433221 111111 123568888888764432 10 1223333333 35899
Q ss_pred ccCCCC
Q 023301 103 NKIDLV 108 (284)
Q Consensus 103 nK~D~~ 108 (284)
|+....
T Consensus 178 N~~~~~ 183 (217)
T cd02035 178 NRVLPA 183 (217)
T ss_pred eCCcCc
Confidence 998654
No 267
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=65.21 E-value=29 Score=28.11 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=37.3
Q ss_pred eceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCCCChhH--HHHHHHHHHHhCCCCceeeecc-CC
Q 023301 62 LDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDLVTETE--LGSLTERIKHINAMAPVKLAKY-GS 136 (284)
Q Consensus 62 l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~ 136 (284)
.+.+|.|+|+.+... +.+.. .++ ..+.... ...=+||.||+|+..+.+ .+...+..+..+ .++++++. ..
T Consensus 74 ad~~i~v~D~~~~~s-~~~~~-~~~-~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~--~~~~e~Sa~~~ 148 (191)
T cd04112 74 AHALLLLYDITNKAS-FDNIR-AWL-TEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG--VPFMETSAKTG 148 (191)
T ss_pred CCEEEEEEECCCHHH-HHHHH-HHH-HHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC--CeEEEEeCCCC
Confidence 567999999987432 22210 011 1111111 223457779999964322 223333333332 46666653 23
Q ss_pred CChhhhh
Q 023301 137 VDMDFVL 143 (284)
Q Consensus 137 v~~~~l~ 143 (284)
.....++
T Consensus 149 ~~v~~l~ 155 (191)
T cd04112 149 LNVELAF 155 (191)
T ss_pred CCHHHHH
Confidence 3444444
No 268
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.84 E-value=9.8 Score=30.05 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=29.3
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHH-HHHHhhcCEEEE-ccCCCCCh
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEA-VEQVAYADRIIL-NKIDLVTE 110 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~-~~Qi~~Ad~ivl-nK~D~~~~ 110 (284)
+.+.+|.|||..+.... .-.+.... ..+ .+.++.|-++|+ ||.|-...
T Consensus 85 dt~avIyVVDssd~dri-s~a~~el~-~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 85 DTDAVIYVVDSSDRDRI-SIAGVELY-SMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred ccceEEEEEeccchhhh-hhhHHHHH-HHhccHhhcCceEEEEeccccchhh
Confidence 68899999999885432 11111111 112 467777776655 99997543
No 269
>COG2229 Predicted GTPase [General function prediction only]
Probab=64.62 E-value=23 Score=29.02 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=40.2
Q ss_pred eceEEEEEcccchHHhhhhcCCccchHHHHHHHhh-cC-EEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 62 LDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY-AD-RIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 62 l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~-Ad-~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
..+.|.+||..+.... . .+.+. ..-+... .. +|.+||.|+-+..-.+.+++.++.-|-..+++...
T Consensus 92 a~gaivlVDss~~~~~-~---a~~ii--~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 92 AVGAIVLVDSSRPITF-H---AEEII--DFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred cceEEEEEecCCCcch-H---HHHHH--HHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeee
Confidence 5568889999885532 1 11111 1233333 33 56679999987766777888887665456666543
No 270
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=64.54 E-value=5.1 Score=26.23 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=18.9
Q ss_pred ceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCC
Q 023301 63 DGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKID 106 (284)
Q Consensus 63 ~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D 106 (284)
+.|++++|+..-..|--+.. -.+...++... ...=++|+||+|
T Consensus 15 ~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 15 DAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred ceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 35789999987554311100 01122334444 345567889887
No 271
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=64.42 E-value=31 Score=33.35 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=40.0
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+....++.|+|..+....... .+ -..+.+|.|+|+..-..... +.+. ....+....=++++||+|+.
T Consensus 78 ~~~inliDTPG~~df~~~~~~-----~l---~~aD~aIlVvDa~~gv~~~t----~~l~-~~~~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 78 DCLINLLDTPGHEDFSEDTYR-----TL---TAVDSALMVIDAAKGVEPQT----RKLM-EVCRLRDTPIFTFINKLDRD 144 (526)
T ss_pred CEEEEEEECCCchhhHHHHHH-----HH---HHCCEEEEEEecCCCCCHHH----HHHH-HHHHhcCCCEEEEEECCccc
Confidence 345788999998775432111 12 24688999999976321100 0110 11233345568889999986
Q ss_pred Ch
Q 023301 109 TE 110 (284)
Q Consensus 109 ~~ 110 (284)
..
T Consensus 145 ~a 146 (526)
T PRK00741 145 GR 146 (526)
T ss_pred cc
Confidence 53
No 272
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=63.97 E-value=51 Score=26.83 Aligned_cols=68 Identities=16% Similarity=0.119 Sum_probs=36.2
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D~ 107 (284)
...+++++|......+.... .-..+.+|.|+|+...... .+.. .+. ..+... -...=+||+||+|+
T Consensus 48 ~l~i~D~~G~~~~~~~~~~~--------~~~ad~vilv~d~~~~~s~-~~~~-~~~-~~i~~~~~~~~~piilv~NK~Dl 116 (198)
T cd04147 48 TLDILDTSGSYSFPAMRKLS--------IQNSDAFALVYAVDDPESF-EEVE-RLR-EEILEVKEDKFVPIVVVGNKADS 116 (198)
T ss_pred EEEEEECCCchhhhHHHHHH--------hhcCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHhcCCCCCcEEEEEEcccc
Confidence 34578888876544432211 1246778999998764322 1110 000 111111 12345888899999
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
..
T Consensus 117 ~~ 118 (198)
T cd04147 117 LE 118 (198)
T ss_pred cc
Confidence 65
No 273
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=63.96 E-value=25 Score=27.61 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=36.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~ 108 (284)
....+.+++|......+.... .-..+.+|.|.|..+.... .+....+. ..+.... ...=+||.||+|+.
T Consensus 46 ~~~~i~Dt~G~~~~~~~~~~~--------~~~~d~~ilv~d~~~~~s~-~~~~~~~~-~~i~~~~~~~piilv~nK~Dl~ 115 (174)
T smart00174 46 VELGLWDTAGQEDYDRLRPLS--------YPDTDVFLICFSVDSPASF-ENVKEKWY-PEVKHFCPNTPIILVGTKLDLR 115 (174)
T ss_pred EEEEEEECCCCcccchhchhh--------cCCCCEEEEEEECCCHHHH-HHHHHHHH-HHHHhhCCCCCEEEEecChhhh
Confidence 346678999976544322211 1245778999998875332 21100011 1111111 22336667999986
Q ss_pred C
Q 023301 109 T 109 (284)
Q Consensus 109 ~ 109 (284)
+
T Consensus 116 ~ 116 (174)
T smart00174 116 E 116 (174)
T ss_pred h
Confidence 5
No 274
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=63.55 E-value=12 Score=33.19 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=50.6
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc-CEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA-DRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A-d~ivlnK~D~~~ 109 (284)
-|-.|.|+|=|+ .|..++. .....|+-|.||-|..-.+ .+.. +. -++.+|+... -++++||+|.++
T Consensus 76 hyahVDcPGHaD--YvKNMIt------gAaqmDgAILVVsA~dGpm--PqTr-EH--iLlarqvGvp~ivvflnK~Dmvd 142 (394)
T COG0050 76 HYAHVDCPGHAD--YVKNMIT------GAAQMDGAILVVAATDGPM--PQTR-EH--ILLARQVGVPYIVVFLNKVDMVD 142 (394)
T ss_pred eEEeccCCChHH--HHHHHhh------hHHhcCccEEEEEcCCCCC--Ccch-hh--hhhhhhcCCcEEEEEEecccccC
Confidence 355667777665 2333332 2345566777777665332 1111 11 1357999984 455679999998
Q ss_pred hhH-HHHH----HHHHHHhC-C--CCceeeec
Q 023301 110 ETE-LGSL----TERIKHIN-A--MAPVKLAK 133 (284)
Q Consensus 110 ~~~-~~~~----~~~l~~~n-p--~a~i~~~~ 133 (284)
+++ ++.+ +++|.++- | ..+|+..+
T Consensus 143 d~ellelVemEvreLLs~y~f~gd~~Pii~gS 174 (394)
T COG0050 143 DEELLELVEMEVRELLSEYGFPGDDTPIIRGS 174 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCcceeech
Confidence 555 4433 44444443 4 57777654
No 275
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.40 E-value=62 Score=30.30 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=56.7
Q ss_pred CCCCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
...|.|+|.|.|+..-.. +.+.+. .+.....-..++.|+|+..-...+.+. ...-+-...+-+|++|.|
T Consensus 268 ~~~d~VLIDTaGrsqrd~~~~~~l~---~l~~~~~~~~~~LVl~at~~~~~~~~~-------~~~f~~~~~~~~I~TKlD 337 (420)
T PRK14721 268 RGKHMVLIDTVGMSQRDQMLAEQIA---MLSQCGTQVKHLLLLNATSSGDTLDEV-------ISAYQGHGIHGCIITKVD 337 (420)
T ss_pred cCCCEEEecCCCCCcchHHHHHHHH---HHhccCCCceEEEEEcCCCCHHHHHHH-------HHHhcCCCCCEEEEEeee
Confidence 467999999999998432 333332 121111123478899998755544321 011233557889999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeeccCC
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKYGS 136 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~g~ 136 (284)
... ..-.+...+... +.++...+.|+
T Consensus 338 Et~--~~G~~l~~~~~~--~lPi~yvt~Gq 363 (420)
T PRK14721 338 EAA--SLGIALDAVIRR--KLVLHYVTNGQ 363 (420)
T ss_pred CCC--CccHHHHHHHHh--CCCEEEEECCC
Confidence 865 344555555444 36777777764
No 276
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=63.00 E-value=24 Score=34.16 Aligned_cols=107 Identities=14% Similarity=0.176 Sum_probs=56.7
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch--HHhhhhcC-CccchHHHHHHHhhcC-EEEEcc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA--MQHLNEVK-PRFVVNEAVEQVAYAD-RIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~--~~~l~~~~-~~~~~~~~~~Qi~~Ad-~ivlnK 104 (284)
..-+.+|.++|--+.-+ .++ ...-..|..|.|||+.+- ..-+...+ -+... .+.+=+.-.. +|+|||
T Consensus 254 ~~~~tliDaPGhkdFi~--nmi------~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lgi~qlivaiNK 324 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIP--NMI------SGASQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLGISQLIVAINK 324 (603)
T ss_pred ceeEEEecCCCccccch--hhh------ccccccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcCcceEEEEeec
Confidence 44568889999555322 122 223445577899999762 22221101 01111 1223333333 566799
Q ss_pred CCCCC--hhHHHHHHHHHHHhC-CCCceeeeccCCCChhhhhc
Q 023301 105 IDLVT--ETELGSLTERIKHIN-AMAPVKLAKYGSVDMDFVLG 144 (284)
Q Consensus 105 ~D~~~--~~~~~~~~~~l~~~n-p~a~i~~~~~g~v~~~~l~~ 144 (284)
+|+++ ++.++.|+..|...- ..+.+...+..-+|...|.+
T Consensus 325 mD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~G 367 (603)
T KOG0458|consen 325 MDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSG 367 (603)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccC
Confidence 99985 666777777666554 44555444434445444443
No 277
>PLN03108 Rab family protein; Provisional
Probab=62.75 E-value=51 Score=27.25 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=34.4
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCCCChh--HHHHHHHHHHHhCCCCceeeec
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDLVTET--ELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~~~~~--~~~~~~~~l~~~np~a~i~~~~ 133 (284)
..+.+|+|+|..+.... ... ..++ ..+ .+. ...=++|.||+|+.+.. ..+...++.+..+ .++++++
T Consensus 78 ~ad~~vlv~D~~~~~s~-~~l-~~~~-~~~-~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~e~S 149 (210)
T PLN03108 78 GAAGALLVYDITRRETF-NHL-ASWL-EDA-RQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG--LIFMEAS 149 (210)
T ss_pred cCCEEEEEEECCcHHHH-HHH-HHHH-HHH-HHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC--CEEEEEe
Confidence 45678999999875432 211 0111 111 111 12237888999986532 2234444554443 4666665
No 278
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=62.54 E-value=8.5 Score=38.59 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=39.7
Q ss_pred CCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
....+++|.|+..... +-..+.. ......-..+.++.|+|+..-...... .+... ...-...=++|+||+|+.
T Consensus 323 ~~~~liDT~G~~~~~~~~~~~~~~-~~~~~~~~aD~iL~VvDa~~~~~~~d~----~i~~~-Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 323 TDFKLVDTGGWEADVEGIDSAIAS-QAQIAVSLADAVVFVVDGQVGLTSTDE----RIVRM-LRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred EEEEEEeCCCcCCCCccHHHHHHH-HHHHHHHhCCEEEEEEECCCCCCHHHH----HHHHH-HHhcCCCEEEEEECcccc
Confidence 3567899999875321 1111110 011112357889999999763221110 11111 223345667889999986
Q ss_pred Ch
Q 023301 109 TE 110 (284)
Q Consensus 109 ~~ 110 (284)
..
T Consensus 397 ~~ 398 (712)
T PRK09518 397 AS 398 (712)
T ss_pred cc
Confidence 53
No 279
>PRK13796 GTPase YqeH; Provisional
Probab=62.53 E-value=12 Score=34.23 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=27.8
Q ss_pred ceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCChh-HHHHHHHHHH
Q 023301 63 DGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVTET-ELGSLTERIK 121 (284)
Q Consensus 63 ~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~~~-~~~~~~~~l~ 121 (284)
..|+.|||+..+...+. ..+.+-+ ...-++|+||+|+.+.+ ..+++.++++
T Consensus 71 ~lIv~VVD~~D~~~s~~--------~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~ 123 (365)
T PRK13796 71 ALVVNVVDIFDFNGSWI--------PGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLR 123 (365)
T ss_pred cEEEEEEECccCCCchh--------HHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHH
Confidence 36899999977653321 1122212 12347788999997532 1334444433
No 280
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=61.92 E-value=6.6 Score=33.11 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=54.0
Q ss_pred CCCEEEEecCCCCC---cHHHHHHhcccccccc-eeeeceEEEEEcccchHHhhhhcCCccch-HHHHHHHhhcCEEEEc
Q 023301 29 QFDHIVIETTGLAK---PAPVIETFCTDELVSQ-YVKLDGVITLVDSKHAMQHLNEVKPRFVV-NEAVEQVAYADRIILN 103 (284)
Q Consensus 29 ~~d~iiIE~sG~a~---p~~i~~~l~~~~~l~~-~~~l~~vv~vvD~~~~~~~l~~~~~~~~~-~~~~~Qi~~Ad~ivln 103 (284)
.-||+++.++|=-+ -.+++..+- .+++. .|.+ .+|.++|+.-.....+-. ..-+. -.++-+++...+=|++
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv--~hl~~~~F~~-c~Vylldsqf~vD~~Kfi-SG~lsAlsAMi~lE~P~INvls 172 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIV--EHLKQWNFNV-CVVYLLDSQFLVDSTKFI-SGCLSALSAMISLEVPHINVLS 172 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHH--HHHhcccCce-eEEEEeccchhhhHHHHH-HHHHHHHHHHHHhcCcchhhhh
Confidence 67999999999554 234444432 12332 3444 356666664433221100 00011 1247899999999999
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCcee
Q 023301 104 KIDLVTETELGSLTERIKHINAMAPVK 130 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~np~a~i~ 130 (284)
|.|+.+....+.++++ +||+....
T Consensus 173 KMDLlk~~~k~~l~~F---l~~d~~~l 196 (273)
T KOG1534|consen 173 KMDLLKDKNKKELERF---LNPDEYLL 196 (273)
T ss_pred HHHHhhhhhHHHHHHh---cCCchhhh
Confidence 9999886443444433 47876654
No 281
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=61.53 E-value=11 Score=34.39 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=28.6
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCChh-HHHHHHHHH
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVTET-ELGSLTERI 120 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~~~-~~~~~~~~l 120 (284)
.-+.++.|+|+..+...+. ..+.+-+. ..-++|+||+|+.+.+ ..+.+.+++
T Consensus 63 ~~~~Il~VvD~~d~~~s~~--------~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l 116 (360)
T TIGR03597 63 SNALIVYVVDIFDFEGSLI--------PELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWM 116 (360)
T ss_pred CCcEEEEEEECcCCCCCcc--------HHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHH
Confidence 3457999999866543221 12222222 2346778999997542 233444443
No 282
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=61.50 E-value=11 Score=33.92 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=34.9
Q ss_pred eEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 64 GVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 64 ~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
-=|+|+|+.+.... ...-|.....+-..+++.||+||+|+.+........ .++ +..+++.+.
T Consensus 147 l~Ivl~D~~~~~gn-g~lLPaG~LREp~~~l~rAD~vi~~~~~~~~~~~~~----~~~---~~~p~~~~~ 208 (326)
T PF02606_consen 147 LDIVLVDADRPFGN-GFLLPAGPLREPLSALKRADAVIVTGCDASDPAIEK----AIR---PGKPIFSAR 208 (326)
T ss_pred cEEEEEeCCCCCcC-CccCCCCcccCChhHhCcccEEEEcCCCcchhHHHH----hhh---cCCceEEEE
Confidence 34677777553321 011122223344679999999999999875443211 111 666776554
No 283
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=61.45 E-value=84 Score=25.26 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=37.3
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh-----cCEEEEccCCCCC---hhH----HHHHHHHHHHhCCCCc
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY-----ADRIILNKIDLVT---ETE----LGSLTERIKHINAMAP 128 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~-----Ad~ivlnK~D~~~---~~~----~~~~~~~l~~~np~a~ 128 (284)
..+.++.|+|..+.... .+. .....++.. .-++|.||+|+.. .++ .+..+++.+..+ ++
T Consensus 72 ~a~~iilv~D~t~~~s~-~~i------~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~ 142 (182)
T cd04128 72 DAVAILFMFDLTRKSTL-NSI------KEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMK--AP 142 (182)
T ss_pred CCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcC--CE
Confidence 45678999998775432 211 111222211 2268889999952 111 122223333333 67
Q ss_pred eeeecc-CCCChhhhh
Q 023301 129 VKLAKY-GSVDMDFVL 143 (284)
Q Consensus 129 i~~~~~-g~v~~~~l~ 143 (284)
+++++. .....+.++
T Consensus 143 ~~e~SAk~g~~v~~lf 158 (182)
T cd04128 143 LIFCSTSHSINVQKIF 158 (182)
T ss_pred EEEEeCCCCCCHHHHH
Confidence 776653 234555554
No 284
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=61.25 E-value=76 Score=24.71 Aligned_cols=34 Identities=12% Similarity=0.009 Sum_probs=19.8
Q ss_pred EEEEccCCCCChh-HHHHHHHHHHHhCCCCceeeec
Q 023301 99 RIILNKIDLVTET-ELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 99 ~ivlnK~D~~~~~-~~~~~~~~l~~~np~a~i~~~~ 133 (284)
+||.||+|+.... ..+.+.++.++.+ ..++++++
T Consensus 118 ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~e~S 152 (170)
T cd04116 118 VVLGNKNDIPERQVSTEEAQAWCRENG-DYPYFETS 152 (170)
T ss_pred EEEEECccccccccCHHHHHHHHHHCC-CCeEEEEE
Confidence 7888999985321 2344555555544 23556654
No 285
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.21 E-value=17 Score=29.76 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=23.0
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC------EEEEccCCCCC
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD------RIILNKIDLVT 109 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad------~ivlnK~D~~~ 109 (284)
.-+++|+|||...-.. +.+. ..++..++...+ +|+-||.|+..
T Consensus 84 ~t~~lIfVvDS~Dr~R-i~ea-----k~eL~~~l~~~~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 84 NTQGLIFVVDSSDRER-IEEA-----KEELHRMLAEPELRNAPLLVFANKQDLPG 132 (181)
T ss_pred CCcEEEEEEeCCcHHH-HHHH-----HHHHHHHHcCcccCCceEEEEechhhccc
Confidence 4567888888866332 3321 133444444443 34448887644
No 286
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=60.50 E-value=31 Score=26.90 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=43.3
Q ss_pred EEEEecCCCCC--cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-----hhcCEEEEcc
Q 023301 32 HIVIETTGLAK--PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-----AYADRIILNK 104 (284)
Q Consensus 32 ~iiIE~sG~a~--p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-----~~Ad~ivlnK 104 (284)
.-+++++|... ....... + -..+.+|.|+|+.+.... .+.. .+. .. ..++ ...=++|.||
T Consensus 49 ~~i~D~~g~~~~~~~~~~~~------~---~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~-~~~~~~~~~~~piilv~nK 115 (165)
T cd04146 49 LEILDTAGQQQADTEQLERS------I---RWADGFVLVYSITDRSSF-DEIS-QLK-QL-IREIKKRDREIPVILVGNK 115 (165)
T ss_pred EEEEECCCCcccccchHHHH------H---HhCCEEEEEEECCCHHHH-HHHH-HHH-HH-HHHHhcCCCCCCEEEEEEC
Confidence 44789999874 2211111 1 135678999999876432 2110 011 11 1221 2334688899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+..... .+...+..+..+ +++++++
T Consensus 116 ~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~S 144 (165)
T cd04146 116 ADLLHYRQVSTEEGEKLASELG--CLFFEVS 144 (165)
T ss_pred CchHHhCccCHHHHHHHHHHcC--CEEEEeC
Confidence 99854322 123333344333 5666665
No 287
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=59.57 E-value=1e+02 Score=25.51 Aligned_cols=98 Identities=14% Similarity=0.222 Sum_probs=47.8
Q ss_pred EEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCCC
Q 023301 33 IVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLVT 109 (284)
Q Consensus 33 iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~~ 109 (284)
-+.+++|.-....+.... + -..+++|.|+|..+-... .+.. .+. .. ..+.. ..=+||.||+|+.+
T Consensus 52 ~iwDtaGqe~~~~l~~~y-----~---~~ad~iIlVfDvtd~~Sf-~~l~-~w~-~~-i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 52 QIWDTAGQERFNSITSAY-----Y---RSAKGIILVYDITKKETF-DDLP-KWM-KM-IDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred EEEeCCCchhhHHHHHHH-----h---cCCCEEEEEEECcCHHHH-HHHH-HHH-HH-HHHhCCCCCcEEEEEECccccc
Confidence 455777765443332221 1 246778999998875432 2211 111 11 22221 23366779999965
Q ss_pred hhHH--HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 110 ETEL--GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 110 ~~~~--~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
..++ +...++.+++ ....+++++. .......+|
T Consensus 120 ~~~v~~~~~~~~a~~~-~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 120 DREISRQQGEKFAQQI-TGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ccccCHHHHHHHHHhc-CCCEEEEecCCCCCCHHHHH
Confidence 3332 2223333333 2356777763 233454444
No 288
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=59.15 E-value=29 Score=32.95 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=52.2
Q ss_pred EEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHH--H-HHHHhhcCEEEEccCCC
Q 023301 32 HIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNE--A-VEQVAYADRIILNKIDL 107 (284)
Q Consensus 32 ~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~--~-~~Qi~~Ad~ivlnK~D~ 107 (284)
.=+|.|+|=.+.+. +-+.| ....+.+.||||.+-.+.- .+++. + ...+ --+-||||+|+
T Consensus 78 lnlIDTPGHVDFsYEVSRSL---------AACEGalLvVDAsQGveAQ------TlAN~YlAle~~L--eIiPViNKIDL 140 (603)
T COG0481 78 LNLIDTPGHVDFSYEVSRSL---------AACEGALLVVDASQGVEAQ------TLANVYLALENNL--EIIPVLNKIDL 140 (603)
T ss_pred EEEcCCCCccceEEEehhhH---------hhCCCcEEEEECccchHHH------HHHHHHHHHHcCc--EEEEeeecccC
Confidence 34689999888652 22222 2456789999999865420 11111 1 1111 12557899999
Q ss_pred CChhHHHHHHHHHHHhC--CCCceeee-ccCCCChhhhh
Q 023301 108 VTETELGSLTERIKHIN--AMAPVKLA-KYGSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~~~~~~~~l~~~n--p~a~i~~~-~~g~v~~~~l~ 143 (284)
- .++.+++++.+..+- +....+.. ....+..++++
T Consensus 141 P-~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iL 178 (603)
T COG0481 141 P-AADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVL 178 (603)
T ss_pred C-CCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHH
Confidence 4 345567777777654 22333333 33455555555
No 289
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=59.11 E-value=16 Score=29.54 Aligned_cols=47 Identities=32% Similarity=0.347 Sum_probs=24.9
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHH-HHHHHhhcCE-EEEccCCCCC
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNE-AVEQVAYADR-IILNKIDLVT 109 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~-~~~Qi~~Ad~-ivlnK~D~~~ 109 (284)
.-+++|.|||...- +.+.+... .+... ..+|++.|-+ |+.||.|+.+
T Consensus 83 stdglIwvvDssD~-~r~~e~~~-~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 83 STDGLIWVVDSSDR-MRMQECKQ-ELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred ccCeEEEEEECchH-HHHHHHHH-HHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 45677888887442 22332211 11122 2577777544 4458888853
No 290
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=58.65 E-value=54 Score=32.15 Aligned_cols=77 Identities=12% Similarity=0.092 Sum_probs=41.6
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHH-HHHHHhhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNE-AVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~-~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
...|+.|+|-.....+... ..-..+.+|.|+|+..-... + ..... ........-+|++||+|+.+
T Consensus 136 ~i~~iDTPGhe~F~~~r~r--------ga~~aDiaILVVda~dgv~~--q----T~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRAR--------GAKVTDIVVLVVAADDGVMP--Q----TIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEEECCCCcchhhHHHh--------hhccCCEEEEEEECCCCCCH--h----HHHHHHHHHHcCCCEEEEEECccccc
Confidence 5678999998765543221 12346778999998752210 0 00000 01223345688889999853
Q ss_pred hhHHHHHHHHHHH
Q 023301 110 ETELGSLTERIKH 122 (284)
Q Consensus 110 ~~~~~~~~~~l~~ 122 (284)
. ..+++.+.++.
T Consensus 202 ~-~~e~v~~~L~~ 213 (587)
T TIGR00487 202 A-NPDRVKQELSE 213 (587)
T ss_pred C-CHHHHHHHHHH
Confidence 2 23344455543
No 291
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=58.18 E-value=17 Score=33.65 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=45.4
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCCCChhHHHHHHHHHHHhCCCCceee---eccCC
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDLVTETELGSLTERIKHINAMAPVKL---AKYGS 136 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~---~~~g~ 136 (284)
.-+.||-|+||+...... -..+..-+...-.+-. +.|+||+|+++...-.+....+.+..|...++. -++|+
T Consensus 213 SSDVvvqVlDARDPmGTr----c~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGK 288 (572)
T KOG2423|consen 213 SSDVVVQVLDARDPMGTR----CKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGK 288 (572)
T ss_pred ccceeEEeeeccCCcccc----cHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccch
Confidence 346688999998754321 1122222334444444 457799999998777777777777777655543 34554
Q ss_pred CCh
Q 023301 137 VDM 139 (284)
Q Consensus 137 v~~ 139 (284)
=.+
T Consensus 289 gal 291 (572)
T KOG2423|consen 289 GAL 291 (572)
T ss_pred hHH
Confidence 433
No 292
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.11 E-value=33 Score=32.56 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=56.9
Q ss_pred cCCCCEEEEecCCCC-CcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHH--HHHHhhcCEEEEc
Q 023301 27 QGQFDHIVIETTGLA-KPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEA--VEQVAYADRIILN 103 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a-~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~--~~Qi~~Ad~ivln 103 (284)
...+|.|+|.|-|=- +-.++...|. .+...-..+.|+.|-.|.--.+.++... .+-..+ .+|-+.-|-|+|+
T Consensus 464 ~~gfDVvLiDTAGR~~~~~~lm~~l~---k~~~~~~pd~i~~vgealvg~dsv~q~~--~fn~al~~~~~~r~id~~~lt 538 (587)
T KOG0781|consen 464 NQGFDVVLIDTAGRMHNNAPLMTSLA---KLIKVNKPDLILFVGEALVGNDSVDQLK--KFNRALADHSTPRLIDGILLT 538 (587)
T ss_pred hcCCCEEEEeccccccCChhHHHHHH---HHHhcCCCceEEEehhhhhCcHHHHHHH--HHHHHHhcCCCccccceEEEE
Confidence 579999999999954 4556666653 3444456777888876644322222110 000001 1344567899999
Q ss_pred cCCCCChhHHHHHHHHHHH-hCCCCceeeeccC
Q 023301 104 KIDLVTETELGSLTERIKH-INAMAPVKLAKYG 135 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~-~np~a~i~~~~~g 135 (284)
|.|.+++. +-..+.= ....+||+..--|
T Consensus 539 k~dtv~d~----vg~~~~m~y~~~~pi~fvg~g 567 (587)
T KOG0781|consen 539 KFDTVDDK----VGAAVSMVYITGKPILFVGVG 567 (587)
T ss_pred eccchhhH----HHHHhhheeecCCceEEEecC
Confidence 99998742 2223332 2356677655433
No 293
>PLN03110 Rab GTPase; Provisional
Probab=58.10 E-value=63 Score=26.84 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=37.3
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCCChhHH--HHHHHHHHHhCCCCceeeecc-
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLVTETEL--GSLTERIKHINAMAPVKLAKY- 134 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~~~~~~--~~~~~~l~~~np~a~i~~~~~- 134 (284)
..+++|.|+|...... +.+.. .++ .. ..+.. ..-+||.||+|+....+. +.... +... ...++++++.
T Consensus 84 ~~~~~ilv~d~~~~~s-~~~~~-~~~-~~-~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-l~~~-~~~~~~e~SA~ 157 (216)
T PLN03110 84 GAVGALLVYDITKRQT-FDNVQ-RWL-RE-LRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQA-LAEK-EGLSFLETSAL 157 (216)
T ss_pred CCCEEEEEEECCChHH-HHHHH-HHH-HH-HHHhCCCCCeEEEEEEChhcccccCCCHHHHHH-HHHH-cCCEEEEEeCC
Confidence 3567899999876432 12110 111 11 12221 234777899998543221 12222 2222 3467777753
Q ss_pred CCCChhhhh
Q 023301 135 GSVDMDFVL 143 (284)
Q Consensus 135 g~v~~~~l~ 143 (284)
.....+.++
T Consensus 158 ~g~~v~~lf 166 (216)
T PLN03110 158 EATNVEKAF 166 (216)
T ss_pred CCCCHHHHH
Confidence 344455554
No 294
>PRK13351 elongation factor G; Reviewed
Probab=57.48 E-value=25 Score=35.11 Aligned_cols=81 Identities=22% Similarity=0.255 Sum_probs=45.6
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+....+++|+|..+........ .-..+.++.|+|+..-..... ..... ...+....-++++||+|+.
T Consensus 72 ~~~i~liDtPG~~df~~~~~~~--------l~~aD~~ilVvd~~~~~~~~~----~~~~~-~~~~~~~p~iiviNK~D~~ 138 (687)
T PRK13351 72 NHRINLIDTPGHIDFTGEVERS--------LRVLDGAVVVFDAVTGVQPQT----ETVWR-QADRYGIPRLIFINKMDRV 138 (687)
T ss_pred CEEEEEEECCCcHHHHHHHHHH--------HHhCCEEEEEEeCCCCCCHHH----HHHHH-HHHhcCCCEEEEEECCCCC
Confidence 3456889999987654322221 124577899999976332110 00101 1222344568899999987
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
.. ++....+.++..
T Consensus 139 ~~-~~~~~~~~i~~~ 152 (687)
T PRK13351 139 GA-DLFKVLEDIEER 152 (687)
T ss_pred CC-CHHHHHHHHHHH
Confidence 54 444555555543
No 295
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=57.12 E-value=91 Score=24.78 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=34.6
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
...|.+++|-.....+-.. .+ -..+.+|.|.|..+-.. +.+....+. ..+.... ...=+||.||+|+.+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~-----~~---~~a~~~ilv~d~~~~~s-~~~~~~~w~-~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 50 TLGLFDTAGQEDYDRLRPL-----SY---PQTDVFLVCFSVVSPSS-FENVKEKWV-PEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred EEEEEECCCccchhhhhhh-----hc---ccCCEEEEEEECCCHHH-HHHHHHHHH-HHHHHhCCCCCEEEEEECHhhhh
Confidence 3346677777554332111 11 24678899999877432 222110011 1111111 123367889999865
Q ss_pred h
Q 023301 110 E 110 (284)
Q Consensus 110 ~ 110 (284)
.
T Consensus 120 ~ 120 (175)
T cd01874 120 D 120 (175)
T ss_pred C
Confidence 4
No 296
>PRK14845 translation initiation factor IF-2; Provisional
Probab=55.78 E-value=50 Score=34.71 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=37.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
|...|+.|+|-.....+... ..-..+.++.|+|+..-.+.. ....... .......=++++||+|+.+
T Consensus 526 p~i~fiDTPGhe~F~~lr~~--------g~~~aDivlLVVDa~~Gi~~q----T~e~I~~-lk~~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 526 PGLLFIDTPGHEAFTSLRKR--------GGSLADLAVLVVDINEGFKPQ----TIEAINI-LRQYKTPFVVAANKIDLIP 592 (1049)
T ss_pred CcEEEEECCCcHHHHHHHHh--------hcccCCEEEEEEECcccCCHh----HHHHHHH-HHHcCCCEEEEEECCCCcc
Confidence 56899999995443332111 123467889999997532110 0000111 1222334578999999974
No 297
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=54.86 E-value=12 Score=33.48 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=56.8
Q ss_pred CCCEEEEecCCCC--CcHHHHHHhccccccccee-eeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEcc
Q 023301 29 QFDHIVIETTGLA--KPAPVIETFCTDELVSQYV-KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a--~p~~i~~~l~~~~~l~~~~-~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK 104 (284)
-+.+++-+.++-. .|.....++.. ++..+ ..|.||=|=||+-.... .+ ..+.+++. --.+||+||
T Consensus 14 ~~~~~~~~~~~~~~wfpgHmakalr~---i~~~l~~~D~iiEvrDaRiPLss-rn-------~~~~~~~~~k~riiVlNK 82 (335)
T KOG2485|consen 14 GDAVIFAKYNMPRRWFPGHMAKALRA---IQNRLPLVDCIIEVRDARIPLSS-RN-------ELFQDFLPPKPRIIVLNK 82 (335)
T ss_pred hhcccccccCCccccCchHHHHHHHH---HHhhcccccEEEEeeccccCCcc-cc-------HHHHHhcCCCceEEEEec
Confidence 3455666666654 48877777653 33333 45667788888765532 11 23345554 345788899
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCcee
Q 023301 105 IDLVTETELGSLTERIKHINAMAPVK 130 (284)
Q Consensus 105 ~D~~~~~~~~~~~~~l~~~np~a~i~ 130 (284)
+|+++..+...+.+.++..|-...+.
T Consensus 83 ~DLad~~~~k~~iq~~~~~~~~~~~~ 108 (335)
T KOG2485|consen 83 MDLADPKEQKKIIQYLEWQNLESYIK 108 (335)
T ss_pred ccccCchhhhHHHHHHHhhcccchhh
Confidence 99999777777777777665444443
No 298
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.65 E-value=22 Score=28.78 Aligned_cols=58 Identities=22% Similarity=0.215 Sum_probs=33.2
Q ss_pred eeeceEEEEEcccchHHhhhhcCCccchHHH-HHHHhhcCEEEE-ccCCCCChhHHHHHHHH
Q 023301 60 VKLDGVITLVDSKHAMQHLNEVKPRFVVNEA-VEQVAYADRIIL-NKIDLVTETELGSLTER 119 (284)
Q Consensus 60 ~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~-~~Qi~~Ad~ivl-nK~D~~~~~~~~~~~~~ 119 (284)
..++++|.+||+.......+.. ......+ .++++.+..+++ ||+|.......++++..
T Consensus 86 ~~v~~iv~lvda~d~er~~es~--~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~ 145 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAESK--KELDALLSDESLATVPFLILGNKIDIPYAASEDELRFH 145 (193)
T ss_pred hhhceeEeeeehhhHHHhHHHH--HHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHH
Confidence 3678899999997755432211 1111112 466777766655 99998654433444433
No 299
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=54.62 E-value=48 Score=33.76 Aligned_cols=87 Identities=13% Similarity=0.080 Sum_probs=47.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D 106 (284)
..+.|+.|+|-.....+... ..-..+.+|.|||+..-... . . .....+ ....=+|++||+|
T Consensus 337 ~~ItfiDTPGhe~F~~m~~r--------ga~~aDiaILVVdAddGv~~--q----T--~e~i~~a~~~~vPiIVviNKiD 400 (787)
T PRK05306 337 GKITFLDTPGHEAFTAMRAR--------GAQVTDIVVLVVAADDGVMP--Q----T--IEAINHAKAAGVPIIVAINKID 400 (787)
T ss_pred EEEEEEECCCCccchhHHHh--------hhhhCCEEEEEEECCCCCCH--h----H--HHHHHHHHhcCCcEEEEEECcc
Confidence 35678999998776543321 12346778999998752210 0 0 011122 2345678899999
Q ss_pred CCChhHHHHHHHHHHHh-------CCCCceeeec
Q 023301 107 LVTETELGSLTERIKHI-------NAMAPVKLAK 133 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~-------np~a~i~~~~ 133 (284)
+.+. ....+...+... ....+++.++
T Consensus 401 l~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 401 KPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred cccc-CHHHHHHHHHHhcccHHHhCCCceEEEEe
Confidence 9542 233444433322 2235666655
No 300
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=54.29 E-value=99 Score=25.49 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=46.4
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~ 109 (284)
..-|.+++|--....+.... + -..+.+|.|+|...-... .+. ..++ ..+..... ..=++|.||+|+..
T Consensus 45 ~l~iwDt~G~e~~~~l~~~~-----~---~~ad~~ilV~D~t~~~S~-~~i-~~w~-~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 45 RFNVWDTAGQEKFGGLRDGY-----Y---IQGQCAIIMFDVTARVTY-KNV-PNWH-RDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred EEEEEECCCchhhhhhhHHH-----h---cCCCEEEEEEECCChHHH-HHH-HHHH-HHHHHhCCCCCEEEEEECccccc
Confidence 33466788875543332221 1 134678999999885432 211 0111 11112111 23467779999843
Q ss_pred hhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 110 ETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 110 ~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
........++.+ .+ ...+++++. .......+|
T Consensus 114 ~~v~~~~~~~~~-~~-~~~~~e~SAk~~~~v~~~F 146 (200)
T smart00176 114 RKVKAKSITFHR-KK-NLQYYDISAKSNYNFEKPF 146 (200)
T ss_pred ccCCHHHHHHHH-Hc-CCEEEEEeCCCCCCHHHHH
Confidence 211111112222 22 356776653 334455554
No 301
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=54.14 E-value=1.3e+02 Score=25.22 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=35.5
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~ 107 (284)
...|.+++|--....+.... .-..+.+|.|+|...-.. +.+.. .++. . ..+.. ..=+||.||+|+
T Consensus 45 ~l~iwDt~G~e~~~~l~~~~--------~~~ad~~IlV~Dvt~~~S-f~~l~-~~~~-~-l~~~~~~~~piIlVgNK~DL 112 (220)
T cd04126 45 NISIWDTAGREQFHGLGSMY--------CRGAAAVILTYDVSNVQS-LEELE-DRFL-G-LTDTANEDCLFAVVGNKLDL 112 (220)
T ss_pred EEEEEeCCCcccchhhHHHH--------hccCCEEEEEEECCCHHH-HHHHH-HHHH-H-HHHhcCCCCcEEEEEECccc
Confidence 35567888876554433221 125678999999887432 22210 0110 1 11211 123677899998
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
.+
T Consensus 113 ~~ 114 (220)
T cd04126 113 TE 114 (220)
T ss_pred cc
Confidence 65
No 302
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.13 E-value=59 Score=26.19 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=35.8
Q ss_pred eEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEE-ccCCCCChhHHHHHHHHHHHhC--CCCceeeecc
Q 023301 64 GVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIIL-NKIDLVTETELGSLTERIKHIN--AMAPVKLAKY 134 (284)
Q Consensus 64 ~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivl-nK~D~~~~~~~~~~~~~l~~~n--p~a~i~~~~~ 134 (284)
+.+.+.|-.+-...+.- .-..+|+ +..|+|+. ||+|+-+..+.. ++..+++. -..|.++|+.
T Consensus 93 GFlLiFDlT~eqSFLnv-------rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs--~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 93 GFLLIFDLTSEQSFLNV-------RNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVS--EDQAAALADKYGLPYFETSA 163 (219)
T ss_pred cceEEEeccchHHHHHH-------HHHHHHHHHhhccCCCCEEEEcCccchhhhhhhh--HHHHHHHHHHhCCCeeeecc
Confidence 45666777665444321 2235666 46799888 999996543332 33333333 2466777765
Q ss_pred C
Q 023301 135 G 135 (284)
Q Consensus 135 g 135 (284)
+
T Consensus 164 ~ 164 (219)
T KOG0081|consen 164 C 164 (219)
T ss_pred c
Confidence 3
No 303
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=52.96 E-value=59 Score=32.73 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=39.6
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEcc
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNK 104 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK 104 (284)
.+.+..+|.|+|..+....... ..-..+.++.|+|+..-... .. ..+..+ ....-++++||
T Consensus 84 ~~~~i~liDTPG~~~f~~~~~~--------al~~aD~~llVvda~~g~~~----~t----~~~~~~~~~~~~p~ivviNK 147 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGGDVTR--------AMRAVDGAIVVVCAVEGVMP----QT----ETVLRQALKENVKPVLFINK 147 (720)
T ss_pred CceEEEEEeCCCccccHHHHHH--------HHHhcCEEEEEEecCCCCCc----cH----HHHHHHHHHcCCCEEEEEEC
Confidence 3567899999999885432211 12346789999998763211 00 111222 22344799999
Q ss_pred CCCCC
Q 023301 105 IDLVT 109 (284)
Q Consensus 105 ~D~~~ 109 (284)
+|...
T Consensus 148 iD~~~ 152 (720)
T TIGR00490 148 VDRLI 152 (720)
T ss_pred hhccc
Confidence 99863
No 304
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=51.88 E-value=1.8e+02 Score=28.63 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=66.9
Q ss_pred CceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCC
Q 023301 4 NGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKP 83 (284)
Q Consensus 4 ~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~ 83 (284)
+.-|=|+. +.+...+.+.+. ..+.++++||. ||..+ +.+.. ...-+..=|+.+..- +
T Consensus 401 ~~vII~G~-Gr~G~~va~~L~--~~g~~vvvID~----d~~~v-~~~~~---------~g~~v~~GDat~~~~-L----- 457 (601)
T PRK03659 401 PQVIIVGF-GRFGQVIGRLLM--ANKMRITVLER----DISAV-NLMRK---------YGYKVYYGDATQLEL-L----- 457 (601)
T ss_pred CCEEEecC-chHHHHHHHHHH--hCCCCEEEEEC----CHHHH-HHHHh---------CCCeEEEeeCCCHHH-H-----
Confidence 33444664 557777777666 46678888884 45543 22221 112345557766321 1
Q ss_pred ccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhhhcC
Q 023301 84 RFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFVLGV 145 (284)
Q Consensus 84 ~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l~~~ 145 (284)
-...+..|+.+|++--|. +.-..+...+|+.||+.+|+.....+-....+...
T Consensus 458 ------~~agi~~A~~vv~~~~d~---~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~ 510 (601)
T PRK03659 458 ------RAAGAEKAEAIVITCNEP---EDTMKIVELCQQHFPHLHILARARGRVEAHELLQA 510 (601)
T ss_pred ------HhcCCccCCEEEEEeCCH---HHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhC
Confidence 135677899999987663 33345667789999999998776655555555443
No 305
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=50.91 E-value=51 Score=28.30 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=23.2
Q ss_pred HHHHhhcCEE-EEccCCCCChhHHHHHHHHHH
Q 023301 91 VEQVAYADRI-ILNKIDLVTETELGSLTERIK 121 (284)
Q Consensus 91 ~~Qi~~Ad~i-vlnK~D~~~~~~~~~~~~~l~ 121 (284)
..=++.-|+. .||..|+.++++..++...++
T Consensus 222 ~sglq~GDIavaiNnldltdp~~m~~llq~l~ 253 (275)
T COG3031 222 KSGLQRGDIAVAINNLDLTDPEDMFRLLQMLR 253 (275)
T ss_pred hhcCCCcceEEEecCcccCCHHHHHHHHHhhh
Confidence 4556667765 479999999988877776665
No 306
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=50.78 E-value=69 Score=26.73 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=35.2
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~ 109 (284)
..-+.+++|......+..... -..+++|.|+|..+-... .+. ..++ ..+..... ..=+||.||+|+.+
T Consensus 63 ~l~i~Dt~G~~~~~~~~~~~~--------~~~~~~ilvfD~~~~~s~-~~i-~~w~-~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 63 RFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARLTY-KNV-PTWH-RDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred EEEEEECCCchhhhhhhHHHc--------ccccEEEEEEeCCCHHHH-HHH-HHHH-HHHHHhCCCCcEEEEEEchhhhh
Confidence 444567788766554333221 134568999998875432 211 0111 11111111 34467779999853
No 307
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=50.53 E-value=59 Score=26.45 Aligned_cols=101 Identities=20% Similarity=0.261 Sum_probs=60.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
-+|.-+|||+|.+-+.+.++.+. ....-++||...||...-+.+.. .+.+.+..|-...+.|.+..
T Consensus 20 ~~d~~~I~T~Gs~i~~~~i~~i~------~~~~~rgVIIfTDpD~~GekIRk--------~i~~~vp~~khafi~~~~a~ 85 (174)
T TIGR00334 20 AFDVDVIETNGSALKDETINLIK------KAQKKQGVIILTDPDFPGEKIRK--------KIEQHLPGYENCFIPKHLAK 85 (174)
T ss_pred hcCceEEEECCCccCHHHHHHHH------HHhhcCCEEEEeCCCCchHHHHH--------HHHHHCCCCeEEeeeHHhcC
Confidence 35778899999998888777653 23456789999999886655432 23555777778888755432
Q ss_pred --------ChhHHHHHHHHHHHhCCCCceeeeccCCCChhhhhcCC
Q 023301 109 --------TETELGSLTERIKHINAMAPVKLAKYGSVDMDFVLGVG 146 (284)
Q Consensus 109 --------~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l~~~~ 146 (284)
....-+.+++.|...-... ......+..+.|+..+
T Consensus 86 ~~~~~iGVE~As~e~I~~AL~~~~~~~---~~~~~~it~~dl~~~g 128 (174)
T TIGR00334 86 PNKKKIGVEEASVEAIIAALENVHEET---KAQQSDISWEDLLELG 128 (174)
T ss_pred cCCCCcccCCCCHHHHHHHHHHhcccc---cCcccccCHHHHHHCC
Confidence 1222345555555443211 1122246666666543
No 308
>PRK10037 cell division protein; Provisional
Probab=50.31 E-value=1.2e+02 Score=25.85 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=25.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
.++|+|||.|++-..... ...+ ..-+.+|+++.+..+
T Consensus 116 ~~yD~iiIDtpp~~~~~~-~~al---------~aaD~vlvpv~~~~~ 152 (250)
T PRK10037 116 GRYQWILLDLPRGASPLT-RQLL---------SLCDHSLAIVNVDAN 152 (250)
T ss_pred CCCCEEEEECCCCccHHH-HHHH---------HhCCEEEEEcCcCHH
Confidence 579999999998866532 2222 234557888888654
No 309
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=49.09 E-value=1e+02 Score=25.82 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH
Q 023301 15 LVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV 94 (284)
Q Consensus 15 l~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi 94 (284)
+.+++..++. ..+++.|.+ |+..-.+.++.+.. .++. + ..+.+|+|+.-....-...-+......+..++
T Consensus 56 ~~~~l~~~~~--~~~~~~i~~---G~l~~~~~~~~i~~--~~~~-~--~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l 125 (242)
T cd01169 56 VAAQLDAVLE--DIPVDAIKI---GMLGSAEIIEAVAE--ALKD-Y--PDIPVVLDPVMVAKSGDSLLDDDAIEALRELL 125 (242)
T ss_pred HHHHHHHHHh--CCCCCEEEE---CCCCCHHHHHHHHH--HHHh-C--CCCcEEECCceeCCCCCcccCHHHHHHHHHHh
Confidence 4666777766 578999998 77764444544431 1211 1 23567788743211000000011112233444
Q ss_pred -hhcCEEEEccCCC
Q 023301 95 -AYADRIILNKIDL 107 (284)
Q Consensus 95 -~~Ad~ivlnK~D~ 107 (284)
..+|+|..|..+.
T Consensus 126 l~~~dvitpN~~Ea 139 (242)
T cd01169 126 LPLATLITPNLPEA 139 (242)
T ss_pred hccCeEEeCCHHHH
Confidence 8899999998753
No 310
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=48.18 E-value=48 Score=24.18 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=24.0
Q ss_pred CEEEEecCCCCCcHHHHHH--hcccccccceeeeceEEEEEcccc
Q 023301 31 DHIVIETTGLAKPAPVIET--FCTDELVSQYVKLDGVITLVDSKH 73 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~--l~~~~~l~~~~~l~~vv~vvD~~~ 73 (284)
.++|+.++|+.++...-.. ... ..+...-.++.++.|+|+..
T Consensus 48 ~~~~vDtpG~~~~~~~~~~~~~~~-~~~~~~~~~d~ii~vv~~~~ 91 (116)
T PF01926_consen 48 KFILVDTPGINDGESQDNDGKEIR-KFLEQISKSDLIIYVVDASN 91 (116)
T ss_dssp EEEEEESSSCSSSSHHHHHHHHHH-HHHHHHCTESEEEEEEETTS
T ss_pred eEEEEeCCCCcccchhhHHHHHHH-HHHHHHHHCCEEEEEEECCC
Confidence 4578899998876332210 000 11222245677888899777
No 311
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=48.16 E-value=54 Score=32.13 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=60.1
Q ss_pred CCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEcc
Q 023301 29 QFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK 104 (284)
+...-+|.|+|=.+.. ++.+ ..-.|++.|+|+|+-.-...- ...+..|.. ..-+..+||
T Consensus 103 ~~~iNiIDTPGHvDFT~EVeR---------ALrVlDGaVlvl~aV~GVqsQ--------t~tV~rQ~~ry~vP~i~FiNK 165 (721)
T KOG0465|consen 103 DYRINIIDTPGHVDFTFEVER---------ALRVLDGAVLVLDAVAGVESQ--------TETVWRQMKRYNVPRICFINK 165 (721)
T ss_pred cceeEEecCCCceeEEEEehh---------hhhhccCeEEEEEcccceehh--------hHHHHHHHHhcCCCeEEEEeh
Confidence 5677899999988853 2222 234688999999987643210 122456665 677889999
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCceeeecc
Q 023301 105 IDLVTETELGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 105 ~D~~~~~~~~~~~~~l~~~np~a~i~~~~~ 134 (284)
.|.+...-...+.....++++.+-++....
T Consensus 166 mDRmGa~~~~~l~~i~~kl~~~~a~vqiPi 195 (721)
T KOG0465|consen 166 MDRMGASPFRTLNQIRTKLNHKPAVVQIPI 195 (721)
T ss_pred hhhcCCChHHHHHHHHhhcCCchheeEccc
Confidence 999887777777776777887766655443
No 312
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=47.98 E-value=52 Score=29.65 Aligned_cols=64 Identities=22% Similarity=0.307 Sum_probs=32.5
Q ss_pred cceeeeceEEEEEcccchHHh--hhhcCCccchHH---HHHH-HhhcCEEEEccCCCCChhHHHHHHHHHHHh
Q 023301 57 SQYVKLDGVITLVDSKHAMQH--LNEVKPRFVVNE---AVEQ-VAYADRIILNKIDLVTETELGSLTERIKHI 123 (284)
Q Consensus 57 ~~~~~l~~vv~vvD~~~~~~~--l~~~~~~~~~~~---~~~Q-i~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~ 123 (284)
++.-+-+..++|||...+... +.... .+..+ ..+- ...+.+||.||+|+. +++-..+.+..+.+
T Consensus 270 rHiER~~~l~fVvD~s~~~~~~p~~~~~--lL~~ELe~yek~L~~rp~liVaNKiD~~-eae~~~l~~L~~~l 339 (366)
T KOG1489|consen 270 RHIERCKGLLFVVDLSGKQLRNPWQQLQ--LLIEELELYEKGLADRPALIVANKIDLP-EAEKNLLSSLAKRL 339 (366)
T ss_pred HHHHhhceEEEEEECCCcccCCHHHHHH--HHHHHHHHHhhhhccCceEEEEeccCch-hHHHHHHHHHHHHc
Confidence 333456778999999887210 01100 00011 1122 233578999999985 33333334444444
No 313
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.96 E-value=2.2e+02 Score=27.32 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=52.8
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccce-eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQY-VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~-~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
.+.|+++|.+.|...-...+..... .+... ..+. .+.|+|+..-...+.+. .. .... ..-+-+|+||.|
T Consensus 333 ~d~d~VLIDTaGr~~~d~~~~e~~~--~l~~~~~p~e-~~LVLdAt~~~~~l~~i-----~~-~f~~-~~~~g~IlTKlD 402 (484)
T PRK06995 333 RNKHIVLIDTIGMSQRDRMVSEQIA--MLHGAGAPVK-RLLLLNATSHGDTLNEV-----VQ-AYRG-PGLAGCILTKLD 402 (484)
T ss_pred cCCCeEEeCCCCcChhhHHHHHHHH--HHhccCCCCe-eEEEEeCCCcHHHHHHH-----HH-Hhcc-CCCCEEEEeCCC
Confidence 3569999999998864432111110 11111 1233 67899998755443321 00 1111 235678999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeeccCC
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKYGS 136 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~g~ 136 (284)
... ..-.+...+... +.+|.....|+
T Consensus 403 et~--~~G~~l~i~~~~--~lPI~yvt~GQ 428 (484)
T PRK06995 403 EAA--SLGGALDVVIRY--KLPLHYVSNGQ 428 (484)
T ss_pred Ccc--cchHHHHHHHHH--CCCeEEEecCC
Confidence 754 345555555544 46777777764
No 314
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.84 E-value=21 Score=29.17 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=32.9
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHH--HHHHhhcC-EEEEccCCCCChhHHHHHHHHHH
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEA--VEQVAYAD-RIILNKIDLVTETELGSLTERIK 121 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~--~~Qi~~Ad-~ivlnK~D~~~~~~~~~~~~~l~ 121 (284)
...++|.|||+.+-.. +.... .....+ .+-++.|- +++.||-|+-+..+.+++.....
T Consensus 92 ~~H~ii~viDa~~~eR-~~~~~--t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~ 152 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRER-FEESK--TAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFG 152 (197)
T ss_pred HhceeEEeecCCCHHH-HHHHH--HHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhh
Confidence 5678999999988332 22211 111222 23344444 55669999877666666655544
No 315
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=46.50 E-value=12 Score=29.67 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=25.3
Q ss_pred CCCceeeeeeCch-HHHHHHHHHHhhcCCCCEEEEecCCCCC
Q 023301 2 VNNGCLCCTVRGD-LVKMLLQLAKKKQGQFDHIVIETTGLAK 42 (284)
Q Consensus 2 L~~GCiCCs~~~d-l~~~l~~l~~~~~~~~d~iiIE~sG~a~ 42 (284)
+.+||.||..... ....|.++++. -...|+||||.-+-..
T Consensus 62 ~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~D~vlVEG~k~~~ 102 (155)
T TIGR00176 62 VASSRRYAFMHETQEERDLEALLDR-LPDLDIILVEGFKDSP 102 (155)
T ss_pred EecCCeEEEEEecCCCcCHHHHHhh-CCCCCEEEECCCCCCC
Confidence 4678888875431 23345555542 2348999999988543
No 316
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=45.92 E-value=42 Score=30.44 Aligned_cols=63 Identities=19% Similarity=0.265 Sum_probs=36.1
Q ss_pred eeceEEEEEcccchHHh--hhhcCCccchHHH----HHHHhhcCEEEEccCC-CCChhHHHHHHHHHHHhCC
Q 023301 61 KLDGVITLVDSKHAMQH--LNEVKPRFVVNEA----VEQVAYADRIILNKID-LVTETELGSLTERIKHINA 125 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~--l~~~~~~~~~~~~----~~Qi~~Ad~ivlnK~D-~~~~~~~~~~~~~l~~~np 125 (284)
+-+..+.|||....... ..++ ..+..++ ..=..-.-+||+||+| ..++++++.+.+.+.+...
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~--~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~ 306 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDY--QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALG 306 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHH--HHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcC
Confidence 44557889998764320 0110 0011111 1122335679999999 5677888888888876543
No 317
>CHL00175 minD septum-site determining protein; Validated
Probab=45.27 E-value=1.6e+02 Score=25.52 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=24.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
..+|+|||++++...+.. ...+. ..+.++.|+++....
T Consensus 125 ~~yD~VIiDtpp~~~~~~-~~~l~---------~aD~viiV~~p~~~s 162 (281)
T CHL00175 125 RGYDYILIDCPAGIDVGF-INAIA---------PAQEAIVVTTPEITA 162 (281)
T ss_pred CCCCEEEEeCCCCCCHHH-HHHHH---------hcCeeEEEcCCChHH
Confidence 379999999988765432 22221 235678888887654
No 318
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=44.67 E-value=67 Score=25.12 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=31.5
Q ss_pred EEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCCh
Q 023301 33 IVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVTE 110 (284)
Q Consensus 33 iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~~ 110 (284)
-+++++|-.....+... .+ -..+.++.|+|....... .+....+. ..+..... ..=+||.||+|+.+.
T Consensus 51 ~i~Dt~G~~~~~~~~~~-----~~---~~~~~~ilv~~~~~~~s~-~~~~~~~~-~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 51 GLYDTAGQEDYDRLRPL-----SY---PMTDVFLICFSVVNPASF-QNVKEEWV-PELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred EEEeCCCcccccccccc-----cC---CCCCEEEEEEECCCHHHH-HHHHHHHH-HHHHhhCCCCCEEEEeEchhhhcC
Confidence 36788886554332111 11 134667888887664321 11100011 11111112 223667799998643
No 319
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=43.59 E-value=60 Score=27.96 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.3
Q ss_pred CCCEEEEecCCCCCc
Q 023301 29 QFDHIVIETTGLAKP 43 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p 43 (284)
.....||.|+|+.+.
T Consensus 78 g~~i~vIDTPGl~~~ 92 (249)
T cd01853 78 GFKLNIIDTPGLLES 92 (249)
T ss_pred CeEEEEEECCCcCcc
Confidence 356789999999987
No 320
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=43.01 E-value=2.9e+02 Score=26.00 Aligned_cols=45 Identities=22% Similarity=0.151 Sum_probs=22.6
Q ss_pred CCCCEEEEecC-CCCCcHHHHHHhcccccccceeeeceEEEEEcccc
Q 023301 28 GQFDHIVIETT-GLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKH 73 (284)
Q Consensus 28 ~~~d~iiIE~s-G~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~ 73 (284)
.+.|++|||.. |+.++......-.....+...+.+ .||.|+|+..
T Consensus 80 ~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~-pviLV~~~~~ 125 (451)
T PRK01077 80 QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGA-PVVLVVDASG 125 (451)
T ss_pred ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCC-CEEEEECCch
Confidence 46899999998 444421100000000112222333 4889999875
No 321
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=42.76 E-value=48 Score=32.54 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=30.6
Q ss_pred CceeeeeeCc----hHHHHHHHHHHhhcCCCCEEEE-ecCCCCCcHHHHHHh
Q 023301 4 NGCLCCTVRG----DLVKMLLQLAKKKQGQFDHIVI-ETTGLAKPAPVIETF 50 (284)
Q Consensus 4 ~GCiCCs~~~----dl~~~l~~l~~~~~~~~d~iiI-E~sG~a~p~~i~~~l 50 (284)
.||||++... ++...+.+-+. ....|+|-| .+.|+..|..+.+.+
T Consensus 141 ~~~i~yt~~p~~~~~~~~~~a~~l~--~~Gad~i~i~Dt~G~l~P~~~~~lv 190 (593)
T PRK14040 141 QGTLSYTTSPVHTLQTWVDLAKQLE--DMGVDSLCIKDMAGLLKPYAAYELV 190 (593)
T ss_pred EEEEEEeeCCccCHHHHHHHHHHHH--HcCCCEEEECCCCCCcCHHHHHHHH
Confidence 3789997644 44433333333 356788766 999999999987755
No 322
>COG1515 Nfi Deoxyinosine 3'endonuclease (endonuclease V) [DNA replication, recombination, and repair]
Probab=42.72 E-value=29 Score=29.11 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=17.1
Q ss_pred cCCCCEEEEecCCCCCcHH
Q 023301 27 QGQFDHIVIETTGLAKPAP 45 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~~ 45 (284)
..+||.|+|+.+|+++|..
T Consensus 93 ~~~~d~ilVDG~GiaHPR~ 111 (212)
T COG1515 93 SVKPDLLLVDGHGIAHPRR 111 (212)
T ss_pred CCCCCEEEEcCcceecCcc
Confidence 4689999999999999975
No 323
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=42.66 E-value=33 Score=28.59 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=41.2
Q ss_pred CCCEEEEecCCCCCcH----HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 29 QFDHIVIETTGLAKPA----PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~----~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
.....||+|+|+.++. .+.+.+.. ......-.+..++.|+...+|...-...- +.+...+-.++-.=-+||++.
T Consensus 48 g~~v~VIDTPGl~d~~~~~~~~~~~i~~-~l~~~~~g~ha~llVi~~~r~t~~~~~~l-~~l~~~FG~~~~k~~ivvfT~ 125 (212)
T PF04548_consen 48 GRQVTVIDTPGLFDSDGSDEEIIREIKR-CLSLCSPGPHAFLLVIPLGRFTEEDREVL-ELLQEIFGEEIWKHTIVVFTH 125 (212)
T ss_dssp TEEEEEEE--SSEETTEEHHHHHHHHHH-HHHHTTT-ESEEEEEEETTB-SHHHHHHH-HHHHHHHCGGGGGGEEEEEEE
T ss_pred ceEEEEEeCCCCCCCcccHHHHHHHHHH-HHHhccCCCeEEEEEEecCcchHHHHHHH-HHHHHHccHHHHhHhhHHhhh
Confidence 4677899999999853 33333321 00001224667899999987754311100 011112223444445677788
Q ss_pred CCCCChhH
Q 023301 105 IDLVTETE 112 (284)
Q Consensus 105 ~D~~~~~~ 112 (284)
.|...+..
T Consensus 126 ~d~~~~~~ 133 (212)
T PF04548_consen 126 ADELEDDS 133 (212)
T ss_dssp GGGGTTTT
T ss_pred cccccccc
Confidence 88766554
No 324
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=42.44 E-value=1.3e+02 Score=24.67 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=12.9
Q ss_pred hhcCEEE-EccCCCCChhHHHHHHHHHH
Q 023301 95 AYADRII-LNKIDLVTETELGSLTERIK 121 (284)
Q Consensus 95 ~~Ad~iv-lnK~D~~~~~~~~~~~~~l~ 121 (284)
..||.|| +...+..+.+.+.+..+.++
T Consensus 170 ~~aD~viiV~~~~~~~~~~~~~~~~~l~ 197 (207)
T TIGR03018 170 RLVGQIVLVVEEGRTTQEAVKEALSALE 197 (207)
T ss_pred HhCCEEEEEEECCCCCHHHHHHHHHHhc
Confidence 3455544 35555555444444444443
No 325
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=42.40 E-value=47 Score=30.38 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=44.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEE-EEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRI-ILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~i-vlnK~D~ 107 (284)
+-..|+..|+|=..-. +.+. ...-.-+..|.+|||+.-.- .+. .|+ ..+...+..-.+| .+||+|+
T Consensus 85 KRkFIiADTPGHeQYT---RNMa-----TGASTadlAIlLVDAR~Gvl--~QT-rRH--s~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGHEQYT---RNMA-----TGASTADLAILLVDARKGVL--EQT-RRH--SFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcHHHHh---hhhh-----cccccccEEEEEEecchhhH--HHh-HHH--HHHHHHhCCcEEEEEEeeecc
Confidence 5577999999854422 1211 12345667899999977432 221 111 1223444444444 4699999
Q ss_pred CC--hhHHHHHHHHHHH
Q 023301 108 VT--ETELGSLTERIKH 122 (284)
Q Consensus 108 ~~--~~~~~~~~~~l~~ 122 (284)
++ ++..++|++.-..
T Consensus 152 vdy~e~~F~~I~~dy~~ 168 (431)
T COG2895 152 VDYSEEVFEAIVADYLA 168 (431)
T ss_pred cccCHHHHHHHHHHHHH
Confidence 86 4455555444433
No 326
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=42.34 E-value=2.3e+02 Score=24.65 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=29.4
Q ss_pred HHHHHhhcCEE-EEccCCCCChhHHHHHHHHHHHhC--CCCceee
Q 023301 90 AVEQVAYADRI-ILNKIDLVTETELGSLTERIKHIN--AMAPVKL 131 (284)
Q Consensus 90 ~~~Qi~~Ad~i-vlnK~D~~~~~~~~~~~~~l~~~n--p~a~i~~ 131 (284)
+..--+.+++| ||-|+|..+-++...+++.|++-. -...++.
T Consensus 178 lkrLt~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~vYP 222 (336)
T KOG1547|consen 178 LKRLTEVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGIDVYP 222 (336)
T ss_pred HHHHhhhheeeeeEeecccccHHHHHHHHHHHHHHHHhcCccccc
Confidence 34445566666 789999999999988888888533 2345553
No 327
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=42.28 E-value=12 Score=29.42 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=35.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
...+.+||+++|+.+...--..+.. ..+ -..+.+|+|+++.+....-.. .++ ....++...--++|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~-~~~---~~~d~vi~V~~~~~~~~~~~~---~~l-~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITE-EYL---PKADVVIFVVDANQDLTESDM---EFL-KQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHH-HHH---STTEEEEEEEETTSTGGGHHH---HHH-HHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHH-Hhh---ccCCEEEEEeccCcccchHHH---HHH-HHHhcCCCCeEEEEEcCC
Confidence 3567889999999764432111111 112 244678999999885432110 011 112344444456666774
No 328
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.82 E-value=19 Score=34.08 Aligned_cols=77 Identities=19% Similarity=0.153 Sum_probs=45.9
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHH-----HHHHHHhCCCCceeee-cc
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSL-----TERIKHINAMAPVKLA-KY 134 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~-----~~~l~~~np~a~i~~~-~~ 134 (284)
.+..-.-.+|+..+...+...+- ...+..+.||+||+|=|--...++-+.. .+.+++.||.++|+.+ -+
T Consensus 27 t~GC~~N~~dse~~~~~l~~~G~-----~~~~~~~~AD~~iiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~ivv~GC~ 101 (459)
T PRK14338 27 TVGCQMNVSDSERLEAALQGVGY-----SPAERPEDADFIVLNSCSVRASAEERILGKLGELQRLKRQRPDTRIVLWGCM 101 (459)
T ss_pred ecCCCCCHHHHHHHHHHHHHCcC-----EECCCcccCCEEEEeccceeeHHHHHHHHHHHHHHHHHhhCCCCEEEEeCCc
Confidence 44445556777777776655431 1234455799999999966554443222 2345678898887754 34
Q ss_pred CCCChhhh
Q 023301 135 GSVDMDFV 142 (284)
Q Consensus 135 g~v~~~~l 142 (284)
.....+.+
T Consensus 102 a~~~~~~~ 109 (459)
T PRK14338 102 VGPNNQSI 109 (459)
T ss_pred cccChhHh
Confidence 45555554
No 329
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=41.74 E-value=1.6e+02 Score=22.72 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=36.8
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCCChhHH--HHHHHHHHHhCCCCceeeecc-
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLVTETEL--GSLTERIKHINAMAPVKLAKY- 134 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~~~~~~--~~~~~~l~~~np~a~i~~~~~- 134 (284)
..++++.|.|..+-.. +... ..++ ..+ .+.. ..=++|-||.|+....++ +......+..+ .++++++.
T Consensus 72 ~~~~~i~v~d~~~~~s-f~~~-~~~~-~~~-~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sa~ 145 (161)
T cd04117 72 RAQGIFLVYDISSERS-YQHI-MKWV-SDV-DEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG--MDFFETSAC 145 (161)
T ss_pred CCcEEEEEEECCCHHH-HHHH-HHHH-HHH-HHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC--CEEEEEeCC
Confidence 4577899999876432 2211 0111 111 1222 223677799998643321 23333333333 56666653
Q ss_pred CCCChhhhh
Q 023301 135 GSVDMDFVL 143 (284)
Q Consensus 135 g~v~~~~l~ 143 (284)
.......++
T Consensus 146 ~~~~v~~~f 154 (161)
T cd04117 146 TNSNIKESF 154 (161)
T ss_pred CCCCHHHHH
Confidence 233444443
No 330
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=41.24 E-value=1.7e+02 Score=22.72 Aligned_cols=90 Identities=12% Similarity=0.119 Sum_probs=42.6
Q ss_pred EEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCCC
Q 023301 33 IVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLVT 109 (284)
Q Consensus 33 iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~~ 109 (284)
-+++++|......+.+... -..++++.|+|..+.... .... .+ ...+..... ..=+++.||.|+.+
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~--------~~~~~~vlv~~~~~~~s~-~~~~-~~-~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 52 EILDTAGTEQFTAMRELYI--------KSGQGFLLVYSVTSEASL-NELG-EL-REQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred EEEeCCCcccchhhhHHHH--------hhCCEEEEEEECCCHHHH-HHHH-HH-HHHHHHhhCCCCCCEEEEEEChhccc
Confidence 5678888766554433321 124567778887664321 1110 01 111111111 12268889999865
Q ss_pred hhH--HHHHHHHHHHhCCCCceeeecc
Q 023301 110 ETE--LGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 110 ~~~--~~~~~~~l~~~np~a~i~~~~~ 134 (284)
... .+...+..+.. ...++++++.
T Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~~~SA 146 (168)
T cd04177 121 DRQVSREDGVSLSQQW-GNVPFYETSA 146 (168)
T ss_pred cCccCHHHHHHHHHHc-CCceEEEeeC
Confidence 332 12223333332 2356666553
No 331
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=40.92 E-value=37 Score=29.27 Aligned_cols=93 Identities=16% Similarity=0.206 Sum_probs=52.3
Q ss_pred CceeeeeeCchHHHHHHHHHHh-hcCCCCEEEEecCCCCC-------cHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 4 NGCLCCTVRGDLVKMLLQLAKK-KQGQFDHIVIETTGLAK-------PAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 4 ~GCiCCs~~~dl~~~l~~l~~~-~~~~~d~iiIE~sG~a~-------p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
+|=+||- ..|..-+.-++.+ +...--|+++.++|=-+ +..|++.|.. ..+++- +|-++|+.-+.
T Consensus 72 g~l~yc~--E~l~~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek-----~~~rl~-~V~LiDs~ycs 143 (290)
T KOG1533|consen 72 GALKYCM--EYLEANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSLNKIFRKLEK-----LDYRLV-AVNLIDSHYCS 143 (290)
T ss_pred hhHHHHH--HHHHhhhHHHHHHhhhccCcEEEEeCCCcEEEEeccchHHHHHHHHHH-----cCceEE-EEEeeeceeeC
Confidence 4445553 2344445333332 23466899999999654 5667766543 123332 45566654432
Q ss_pred HhhhhcCCccchH----H-HHHHHhhcCEEEEccCCCCC
Q 023301 76 QHLNEVKPRFVVN----E-AVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 76 ~~l~~~~~~~~~~----~-~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
+- ..+++. . -+-+++.+.+=|++|+|+..
T Consensus 144 ~p-----~~~iS~lL~sl~tMl~melphVNvlSK~Dl~~ 177 (290)
T KOG1533|consen 144 DP-----SKFISSLLVSLATMLHMELPHVNVLSKADLLK 177 (290)
T ss_pred Ch-----HHHHHHHHHHHHHHHhhcccchhhhhHhHHHH
Confidence 11 011111 1 25789999999999999854
No 332
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=40.82 E-value=32 Score=25.66 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=17.6
Q ss_pred EEccCCC-CChhHHHHHHHHHHHhCCCCceeeecc
Q 023301 101 ILNKIDL-VTETELGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 101 vlnK~D~-~~~~~~~~~~~~l~~~np~a~i~~~~~ 134 (284)
++||+|. .+++.++++++ ..|...++.+|.
T Consensus 1 AaNK~D~~~a~~ni~kl~~----~~~~~~vVp~SA 31 (109)
T PF08438_consen 1 AANKADLPAADENIEKLKE----KYPDEPVVPTSA 31 (109)
T ss_dssp EEE-GGG-S-HHHHHHHHH----HHTT-EEEEE-H
T ss_pred CCccccccccHhHHHHHHH----hCCCCceeeccH
Confidence 5799997 55555655544 448888887763
No 333
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=40.61 E-value=98 Score=31.08 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=42.6
Q ss_pred CCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccC
Q 023301 30 FDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKI 105 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~ 105 (284)
..+=+|.|+|=.|... +...| --+|+.|.|+||-.-.+-. ...+.+|. ...-++++||+
T Consensus 76 ~~iNlIDTPGHVDFt~EV~rsl---------rvlDgavvVvdaveGV~~Q--------TEtv~rqa~~~~vp~i~fiNKm 138 (697)
T COG0480 76 YRINLIDTPGHVDFTIEVERSL---------RVLDGAVVVVDAVEGVEPQ--------TETVWRQADKYGVPRILFVNKM 138 (697)
T ss_pred eEEEEeCCCCccccHHHHHHHH---------HhhcceEEEEECCCCeeec--------HHHHHHHHhhcCCCeEEEEECc
Confidence 5667899999998653 33332 3578899999997644311 12233443 33678999999
Q ss_pred CCCChh
Q 023301 106 DLVTET 111 (284)
Q Consensus 106 D~~~~~ 111 (284)
|.+..+
T Consensus 139 DR~~a~ 144 (697)
T COG0480 139 DRLGAD 144 (697)
T ss_pred cccccC
Confidence 997653
No 334
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=40.00 E-value=1.7e+02 Score=27.03 Aligned_cols=87 Identities=14% Similarity=0.175 Sum_probs=46.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHh-hhhcCCccchHHHHHHHh----hcCE-EE
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQH-LNEVKPRFVVNEAVEQVA----YADR-II 101 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~-l~~~~~~~~~~~~~~Qi~----~Ad~-iv 101 (284)
.++|+|||.|++...+..+- .|. .-+.||+.+.+..+.-. +..+- ..+ ..+.+.++ ..++ |+
T Consensus 233 ~~YD~IlID~pPslg~lt~n-AL~---------AAd~vliPv~~~~~s~~s~~~~~-~~i-~~~~~~~~~~~~~~~l~il 300 (387)
T PHA02519 233 DNYDIIVIDSAPNLGTGTIN-VVC---------AADVIVVATPAELFDYVSVLQFF-TML-LDLLATVDLGGFEPVVRLL 300 (387)
T ss_pred ccCCEEEEECCCCccHHHHH-HHH---------HhCEEEEecCCcHHHHHHHHHHH-HHH-HHHHHHHHhcccCCCeEEE
Confidence 57999999999888765432 222 12357777777654311 00000 000 11122322 1122 78
Q ss_pred EccCCCCChhHHHHHHHHHHHhCCC
Q 023301 102 LNKIDLVTETELGSLTERIKHINAM 126 (284)
Q Consensus 102 lnK~D~~~~~~~~~~~~~l~~~np~ 126 (284)
+|+.|..+...-+.+.+.+++..+.
T Consensus 301 ~t~~~~~~~~~~~~i~~~l~~~~g~ 325 (387)
T PHA02519 301 LTKYSLTVGNQSRWMEEQIRNTWGS 325 (387)
T ss_pred EeeECCCCchHHHHHHHHHHHHhcc
Confidence 8999875433444466777777654
No 335
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=39.35 E-value=50 Score=29.57 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=39.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhccccccc---ceeeeceEEEE--EcccchHHhhhhcCCccchHHHHHHHhhcCEEEEc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVS---QYVKLDGVITL--VDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILN 103 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~---~~~~l~~vv~v--vD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivln 103 (284)
.....||.|+|+.+...+-+... ..++ ....++.++.| +|..++...-... -+.+...+-+.+-.--+||+|
T Consensus 85 G~~l~VIDTPGL~d~~~~~e~~~--~~ik~~l~~~g~DvVLyV~rLD~~R~~~~Dkql-Lk~Iqe~FG~~iw~~~IVVfT 161 (313)
T TIGR00991 85 GFTLNIIDTPGLIEGGYINDQAV--NIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQV-IRAITDSFGKDIWRKSLVVLT 161 (313)
T ss_pred CeEEEEEECCCCCchHHHHHHHH--HHHHHHhhcCCCCEEEEEeccCcccCCHHHHHH-HHHHHHHhhhhhhccEEEEEE
Confidence 44678999999998754322211 1111 12257778888 5554543210000 001111222333344588899
Q ss_pred cCCCCCh
Q 023301 104 KIDLVTE 110 (284)
Q Consensus 104 K~D~~~~ 110 (284)
++|..++
T Consensus 162 h~d~~~p 168 (313)
T TIGR00991 162 HAQFSPP 168 (313)
T ss_pred CCccCCC
Confidence 9997743
No 336
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.55 E-value=18 Score=34.06 Aligned_cols=66 Identities=21% Similarity=0.128 Sum_probs=36.8
Q ss_pred EEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHH---HH--HHHHHhCCCCceeee-ccCCC
Q 023301 67 TLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGS---LT--ERIKHINAMAPVKLA-KYGSV 137 (284)
Q Consensus 67 ~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~---~~--~~l~~~np~a~i~~~-~~g~v 137 (284)
-.+|+..+...|...+. ...+..+.||+||||=|--...++.+. +. +.+++.||.+.|+.+ .+...
T Consensus 14 N~~ds~~~~~~l~~~G~-----~~~~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~~~vvv~GC~a~~ 85 (439)
T PRK14328 14 NEEDSEKLAGMLKSMGY-----ERTENREEADIIIFNTCCVRENAENKVFGNLGELKKLKEKNPNLIIGVCGCMMQQ 85 (439)
T ss_pred CHHHHHHHHHHHHHCcC-----EECCCcCcCCEEEEecccEechHHHHHHHHHHHHHHHHhhCCCCEEEEECchhcc
Confidence 34455555555543221 123445679999999986655444322 22 335667898887754 34444
No 337
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=38.36 E-value=14 Score=34.85 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=38.3
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhH---HHHHHHH--HHHhCCCCceeee
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETE---LGSLTER--IKHINAMAPVKLA 132 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~---~~~~~~~--l~~~np~a~i~~~ 132 (284)
.+..-+-.+|+..+...+...+-.. .+. +.||+||||=|--...++ ++.+... +++.||+++|+.+
T Consensus 10 tlGC~~N~~dse~~~~~l~~~G~~~-----~~~-~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~ 80 (446)
T PRK14337 10 TFGCQMNVNDSDWLARALVARGFTE-----APE-EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVG 80 (446)
T ss_pred eeCCCCcHHHHHHHHHHHHHCCCEE-----CCc-CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3444445567767666665433211 122 569999999986544433 3333222 4677899888754
No 338
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=38.30 E-value=1.4e+02 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=11.2
Q ss_pred EEEEccCCCCChhHHHHHHHHHHH
Q 023301 99 RIILNKIDLVTETELGSLTERIKH 122 (284)
Q Consensus 99 ~ivlnK~D~~~~~~~~~~~~~l~~ 122 (284)
+|++.+.+..+...+.+..+.++.
T Consensus 239 vilV~~~~~t~~~~~~~~~~~l~~ 262 (274)
T TIGR03029 239 TLIVSRVNETRLHELTSLKEHLSG 262 (274)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHh
Confidence 333445555554444444444443
No 339
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=38.06 E-value=3.6e+02 Score=25.65 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCCCEEEEecCCCCCcHHHH-HHhcccccccceeeeceEEEEEcccch
Q 023301 28 GQFDHIVIETTGLAKPAPVI-ETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~-~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
.+.|+||||..|-.....+. .... ...+...+.. .||.|+|....
T Consensus 121 ~~~D~vIIEGaGGl~~~~~~~~d~s-~~~lA~~l~a-pVILV~d~~~g 166 (475)
T TIGR00313 121 REYDYVVIEGAGSPAEINLLKRDLA-NMRIAELANA-DAILVADIDRG 166 (475)
T ss_pred hcCCEEEEECCCCccccccCcCCch-HHHHHHHhCC-CEEEEEeCCcc
Confidence 47899999999733221100 0000 0111112223 47888998764
No 340
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.91 E-value=61 Score=27.07 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=24.8
Q ss_pred EccCCCCChhHHHHHH--HHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 102 LNKIDLVTETELGSLT--ERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 102 lnK~D~~~~~~~~~~~--~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
-||+||++..+...-+ ...+++| +..++++. ...+...++
T Consensus 135 GnKtDL~dkrqvs~eEg~~kAkel~--a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 135 GNKTDLSDKRQVSIEEGERKAKELN--AEFIETSAKAGENVKQLF 177 (221)
T ss_pred cccccccchhhhhHHHHHHHHHHhC--cEEEEecccCCCCHHHHH
Confidence 3999999987754443 3344454 56666653 345666665
No 341
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=37.78 E-value=68 Score=28.29 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=15.5
Q ss_pred CCCCEEEE-ecCCCCCcHHHHHHh
Q 023301 28 GQFDHIVI-ETTGLAKPAPVIETF 50 (284)
Q Consensus 28 ~~~d~iiI-E~sG~a~p~~i~~~l 50 (284)
...|+|-+ .|.|++.|..+.+.+
T Consensus 167 ~G~d~i~l~DT~G~~~P~~v~~lv 190 (287)
T PRK05692 167 LGCYEISLGDTIGVGTPGQVRAVL 190 (287)
T ss_pred cCCcEEEeccccCccCHHHHHHHH
Confidence 45666544 788888888776654
No 342
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.72 E-value=12 Score=35.34 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=44.2
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhH---HHHHHHH--HHHhCCCCceeee-cc
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETE---LGSLTER--IKHINAMAPVKLA-KY 134 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~---~~~~~~~--l~~~np~a~i~~~-~~ 134 (284)
.+..-+-.+|+..+...+...+- ...+..+.||+||||=|--...++ +..+.+. .++.||++.|+.+ .+
T Consensus 13 t~GC~~N~~ds~~~~~~l~~~G~-----~~~~~~~~ADiiiiNTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvv~Gc~ 87 (448)
T PRK14333 13 TFGCQMNKADSERMAGILEDMGY-----QWAEDELQADLVLYNTCTIRDNAEQKVYSYLGRQAKRKHKNPDLTLVVAGCV 87 (448)
T ss_pred EcCCCCcHHHHHHHHHHHHHCcC-----EECCCcccCCEEEEEeeeeeehHHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 33344455666666666554331 122345569999999986544433 3334332 2567899887754 34
Q ss_pred CCCChhhhh
Q 023301 135 GSVDMDFVL 143 (284)
Q Consensus 135 g~v~~~~l~ 143 (284)
.....+.++
T Consensus 88 a~~~~~~~~ 96 (448)
T PRK14333 88 AQQEGESLL 96 (448)
T ss_pred CccCHHHHH
Confidence 555555554
No 343
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=37.57 E-value=37 Score=31.41 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=26.6
Q ss_pred HHHHhhcCEEEEccCCCCChhHHHHHHHHHHHh
Q 023301 91 VEQVAYADRIILNKIDLVTETELGSLTERIKHI 123 (284)
Q Consensus 91 ~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~ 123 (284)
.--++..-+|+++|+|.++++.++.+.+.+.++
T Consensus 251 ~~a~~lPviVvvTK~D~~~ddr~~~v~~ei~~~ 283 (527)
T COG5258 251 ALAMELPVIVVVTKIDMVPDDRFQGVVEEISAL 283 (527)
T ss_pred hhhhcCCEEEEEEecccCcHHHHHHHHHHHHHH
Confidence 456778889999999999998887777666654
No 344
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=36.96 E-value=45 Score=27.97 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=20.2
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHH
Q 023301 19 LLQLAKKKQGQFDHIVIETTGLAKPAP 45 (284)
Q Consensus 19 l~~l~~~~~~~~d~iiIE~sG~a~p~~ 45 (284)
|.+.++.-...||.|+|+.+|+++|..
T Consensus 83 l~~~~~~l~~~PDlilVDG~G~~HpR~ 109 (208)
T cd06559 83 LLEALEKLKTKPDLLLVDGHGIAHPRR 109 (208)
T ss_pred HHHHHHhCCCCCCEEEEeCCccccCCC
Confidence 455555223469999999999999975
No 345
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=36.89 E-value=3.6e+02 Score=26.14 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=58.5
Q ss_pred CceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCC
Q 023301 4 NGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKP 83 (284)
Q Consensus 4 ~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~ 83 (284)
|.-+=|+. +.+...+.+.+. +.+.++++||. |+.. .+.+.. .+.-+..=|+.+..- +
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~--~~g~~vvvId~----d~~~-~~~~~~---------~g~~~i~GD~~~~~~-L----- 474 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLL--AAGIPLVVIET----SRTR-VDELRE---------RGIRAVLGNAANEEI-M----- 474 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHH--HCCCCEEEEEC----CHHH-HHHHHH---------CCCeEEEcCCCCHHH-H-----
Confidence 45566665 557777776666 45678888885 4544 233221 122345557766321 1
Q ss_pred ccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 84 RFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 84 ~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
....++.||.+++.-.|- .+. ..+...+++.||+.+++...
T Consensus 475 ------~~a~i~~a~~viv~~~~~--~~~-~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 475 ------QLAHLDCARWLLLTIPNG--YEA-GEIVASAREKRPDIEIIARA 515 (558)
T ss_pred ------HhcCccccCEEEEEcCCh--HHH-HHHHHHHHHHCCCCeEEEEE
Confidence 135777899888876662 222 24555678889999988554
No 346
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=36.52 E-value=2.5e+02 Score=23.56 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
..+|+|||++++-..... ...+ ...+.+|.|+++...
T Consensus 110 ~~~D~viiD~p~~~~~~~-~~~l---------~~aD~viiv~~~~~~ 146 (261)
T TIGR01968 110 EEFDYVIIDCPAGIESGF-RNAV---------APADEAIVVTTPEVS 146 (261)
T ss_pred HhCCEEEEeCCCCcCHHH-HHHH---------HhCCeEEEEcCCCcH
Confidence 368999999987655322 2222 123457888888654
No 347
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=35.90 E-value=21 Score=22.30 Aligned_cols=8 Identities=50% Similarity=1.605 Sum_probs=5.4
Q ss_pred CCceeeee
Q 023301 3 NNGCLCCT 10 (284)
Q Consensus 3 ~~GCiCCs 10 (284)
++||-||.
T Consensus 23 pggccccc 30 (56)
T TIGR03602 23 PGGCCCCC 30 (56)
T ss_pred CCCeEEEe
Confidence 56777764
No 348
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=35.67 E-value=29 Score=33.14 Aligned_cols=100 Identities=18% Similarity=0.204 Sum_probs=46.9
Q ss_pred EEEEecCCCCC-cHHHHHHhcccccccceeeec-eEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCC
Q 023301 32 HIVIETTGLAK-PAPVIETFCTDELVSQYVKLD-GVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~-p~~i~~~l~~~~~l~~~~~l~-~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~ 108 (284)
+.+|.|+|+-+ |.+--.++... .+.....|. +|+++.|-..-..+--... -.+...+..=.. ..-++|+||+|..
T Consensus 217 wQViDTPGILD~plEdrN~IEmq-sITALAHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m 294 (620)
T KOG1490|consen 217 WQVIDTPGILDRPEEDRNIIEMQ-IITALAHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAM 294 (620)
T ss_pred eeecCCccccCcchhhhhHHHHH-HHHHHHHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeeccccc
Confidence 47889999988 43322222110 111112232 4668888655333210000 000011111111 2357899999998
Q ss_pred ChhHHHHHH-HHHHHhC--CCCceeeec
Q 023301 109 TETELGSLT-ERIKHIN--AMAPVKLAK 133 (284)
Q Consensus 109 ~~~~~~~~~-~~l~~~n--p~a~i~~~~ 133 (284)
.++.+..-. +.+..+. +.++|+.++
T Consensus 295 ~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 295 RPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred CccccCHHHHHHHHHHHhccCceEEEec
Confidence 776654443 3444443 336676654
No 349
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=33.87 E-value=99 Score=25.94 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=25.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
.++|+|||++++...+.... .+. .-+.||.|+++...
T Consensus 107 ~~yD~VIiD~p~~~~~~~~~-~l~---------~ad~vliv~~~~~~ 143 (251)
T TIGR01969 107 DDTDFLLIDAPAGLERDAVT-ALA---------AADELLLVVNPEIS 143 (251)
T ss_pred hhCCEEEEeCCCccCHHHHH-HHH---------hCCeEEEEECCCCc
Confidence 46999999999887765432 221 23457888888654
No 350
>PRK04004 translation initiation factor IF-2; Validated
Probab=33.56 E-value=85 Score=30.79 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=36.2
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
+.|+.|+|......+... ..-..+.++.|+|+..-... + ...... ........=+|++||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~--------~~~~aD~~IlVvDa~~g~~~--q--t~e~i~-~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKR--------GGALADIAILVVDINEGFQP--Q--TIEAIN-ILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHH--------hHhhCCEEEEEEECCCCCCH--h--HHHHHH-HHHHcCCCEEEEEECcCCc
Confidence 688999998765543221 11246678999999762110 0 000001 1222334567888999985
No 351
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=33.46 E-value=79 Score=26.40 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=26.5
Q ss_pred HhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 94 VAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 94 i~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
++.||+|++|..-- +++...++.+.+..+.|.++|+.+.
T Consensus 120 ~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 120 WSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp GHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred hcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECC
Confidence 58999999998754 6677788888888888899998653
No 352
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=33.05 E-value=3e+02 Score=25.23 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=24.3
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
..+|+|||.|++......+. .+. .-+.||.++.+..+
T Consensus 233 ~~yD~IiiD~pp~~~~~~~~-al~---------aad~viipv~p~~~ 269 (387)
T TIGR03453 233 DDYDVVVIDCPPQLGFLTLS-ALC---------AATGVLITVHPQML 269 (387)
T ss_pred hcCCEEEEeCCccHhHHHHH-HHH---------HcCeeEEcCCCchh
Confidence 57999999999987765432 221 23446777777553
No 353
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.62 E-value=25 Score=33.31 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=43.0
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHH---HHHH--HHHHHhCCCCceeee-cc
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETEL---GSLT--ERIKHINAMAPVKLA-KY 134 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~---~~~~--~~l~~~np~a~i~~~-~~ 134 (284)
.+..-+-.+|+..+...|...+- ........||+||||=|--...++. ..+. ..+++.||.++|+.+ .+
T Consensus 30 t~GC~~N~~dse~~~~~l~~~G~-----~~~~~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivvgGc~ 104 (467)
T PRK14329 30 SYGCQMNFADSEIVASILQMAGY-----NTTENLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKKKNPKLIVGVLGCM 104 (467)
T ss_pred ecCCCCcHHHHHHHHHHHHHCcC-----EECCCcccCCEEEEeCcceechHHHHHHHHHHHHHHHHhhCCCcEEEEECCh
Confidence 33344445566665555544321 1123456799999999866544332 2221 234678899887754 34
Q ss_pred CCCChhhhh
Q 023301 135 GSVDMDFVL 143 (284)
Q Consensus 135 g~v~~~~l~ 143 (284)
.....+.++
T Consensus 105 a~~~~~~~l 113 (467)
T PRK14329 105 AERLKDKLL 113 (467)
T ss_pred hcCcHHHHH
Confidence 444444444
No 354
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.57 E-value=1.4e+02 Score=24.77 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=45.9
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEE---EccCCCCCh--hHHHHHHHHHHHhCCCCceeeecc-
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRII---LNKIDLVTE--TELGSLTERIKHINAMAPVKLAKY- 134 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~iv---lnK~D~~~~--~~~~~~~~~l~~~np~a~i~~~~~- 134 (284)
..++.|.|-|..+...... . ..++ .++.+|.. .|+|+ -||+|+.+. -+.++...+... -.+..++|+.
T Consensus 77 gA~AAivvYDit~~~SF~~-a-K~Wv-keL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~--~gll~~ETSAK 150 (200)
T KOG0092|consen 77 GANAAIVVYDITDEESFEK-A-KNWV-KELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAES--QGLLFFETSAK 150 (200)
T ss_pred CCcEEEEEEecccHHHHHH-H-HHHH-HHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHh--cCCEEEEEecc
Confidence 3456677777777544321 1 1233 45678888 66665 399999873 234555554443 3466677765
Q ss_pred CCCChhhhhc
Q 023301 135 GSVDMDFVLG 144 (284)
Q Consensus 135 g~v~~~~l~~ 144 (284)
...+.+.++.
T Consensus 151 Tg~Nv~~if~ 160 (200)
T KOG0092|consen 151 TGENVNEIFQ 160 (200)
T ss_pred cccCHHHHHH
Confidence 4667777663
No 355
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.27 E-value=22 Score=33.52 Aligned_cols=78 Identities=13% Similarity=0.020 Sum_probs=42.1
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhH---HHHHH--HHHHHhCCCCceeee-cc
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETE---LGSLT--ERIKHINAMAPVKLA-KY 134 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~---~~~~~--~~l~~~np~a~i~~~-~~ 134 (284)
.+..-.-.+|+..+...+...+. ...+..+.||+||+|=|--...++ +..++ ..+++.||.+.|+.+ .+
T Consensus 13 tlGC~~N~~dse~~~~~l~~~G~-----~~~~~~~~ADviiiNTC~v~~~A~~k~~~~i~~~~~~k~~~~~~~ivv~GC~ 87 (445)
T PRK14340 13 TFGCQMNQADSEIITALLQDEGY-----VPAASEEDADIVLLNTCAVRENAVERIGHYLQHLKGAKRRRKGLLVGVLGCV 87 (445)
T ss_pred ecCCCCcHHHHHHHHHHHHHCcC-----EECCCcccCCEEEEEeeeeeccHHHHHHHHHHHHHHHhhcCCCCEEEEeCcc
Confidence 33344455666666665544331 112344569999999986544433 22222 134566888887654 34
Q ss_pred CCCChhhhh
Q 023301 135 GSVDMDFVL 143 (284)
Q Consensus 135 g~v~~~~l~ 143 (284)
.....+.++
T Consensus 88 a~~~~~e~~ 96 (445)
T PRK14340 88 PQYEREEMF 96 (445)
T ss_pred cccchHHHH
Confidence 444444443
No 356
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=32.19 E-value=2.4e+02 Score=23.00 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=23.9
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCC
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVT 109 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~ 109 (284)
..+.+|.|.|..+-.. +.+....+. ..+..... ..=++|.||+|+.+
T Consensus 87 ~ad~iilv~d~t~~~S-f~~~~~~w~-~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 87 RSDVVLLCFSIASPNS-LRNVKTMWY-PEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred CCCEEEEEEECCChhH-HHHHHHHHH-HHHHHhCCCCCEEEEEEchhccc
Confidence 5677889999876432 221100011 12222211 23367779999853
No 357
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=32.15 E-value=93 Score=29.43 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=30.2
Q ss_pred CceeeeeeCc----hHHHHHHHHHHhhcCCCCEEEE-ecCCCCCcHHHHHHh
Q 023301 4 NGCLCCTVRG----DLVKMLLQLAKKKQGQFDHIVI-ETTGLAKPAPVIETF 50 (284)
Q Consensus 4 ~GCiCCs~~~----dl~~~l~~l~~~~~~~~d~iiI-E~sG~a~p~~i~~~l 50 (284)
.+|||++... ++...+.+-+. ....|+|-| .+.|++.|..+.+.+
T Consensus 140 ~~~i~~t~~p~~~~~~~~~~a~~l~--~~Gad~I~i~Dt~G~l~P~~v~~lv 189 (448)
T PRK12331 140 QVAISYTTSPVHTIDYFVKLAKEMQ--EMGADSICIKDMAGILTPYVAYELV 189 (448)
T ss_pred EEEEEeecCCCCCHHHHHHHHHHHH--HcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 4789998743 34333333333 356787766 999999999987755
No 358
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=32.01 E-value=87 Score=29.79 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=30.1
Q ss_pred CceeeeeeCc----hH-HHHHHHHHHhhcCCCCEEEE-ecCCCCCcHHHHHHh
Q 023301 4 NGCLCCTVRG----DL-VKMLLQLAKKKQGQFDHIVI-ETTGLAKPAPVIETF 50 (284)
Q Consensus 4 ~GCiCCs~~~----dl-~~~l~~l~~~~~~~~d~iiI-E~sG~a~p~~i~~~l 50 (284)
.||||++... ++ .+...++.+ ...|+|-| .+.|++.|..+.+.+
T Consensus 139 ~~~i~~t~~p~~t~e~~~~~a~~l~~---~Gad~I~i~Dt~G~l~P~~v~~Lv 188 (467)
T PRK14041 139 QGAISYTVSPVHTLEYYLEFARELVD---MGVDSICIKDMAGLLTPKRAYELV 188 (467)
T ss_pred EEEEEeccCCCCCHHHHHHHHHHHHH---cCCCEEEECCccCCcCHHHHHHHH
Confidence 3899998752 33 333444443 56787766 999999999987755
No 359
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=31.72 E-value=48 Score=29.69 Aligned_cols=44 Identities=32% Similarity=0.361 Sum_probs=29.5
Q ss_pred HHHHhhcCEEEE-ccCCCCChhH----HHHHHHHHHHhC-CCCceeeecc
Q 023301 91 VEQVAYADRIIL-NKIDLVTETE----LGSLTERIKHIN-AMAPVKLAKY 134 (284)
Q Consensus 91 ~~Qi~~Ad~ivl-nK~D~~~~~~----~~~~~~~l~~~n-p~a~i~~~~~ 134 (284)
.+-...-+++++ ||+|++.+++ -+.+.++++.-+ ..|+|+..+.
T Consensus 174 veiM~LkhiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisA 223 (466)
T KOG0466|consen 174 VEIMKLKHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISA 223 (466)
T ss_pred HHHhhhceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehh
Confidence 344444555555 9999987644 567777787665 5678887653
No 360
>PLN00023 GTP-binding protein; Provisional
Probab=30.88 E-value=2.8e+02 Score=25.16 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=11.7
Q ss_pred eeceEEEEEcccchH
Q 023301 61 KLDGVITLVDSKHAM 75 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~ 75 (284)
..+++|.|.|..+-.
T Consensus 106 ~AdgiILVyDITdr~ 120 (334)
T PLN00023 106 QINGVIFVHDLSQRR 120 (334)
T ss_pred CCCEEEEEEeCCCHH
Confidence 577889999988743
No 361
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=30.37 E-value=2.7e+02 Score=21.92 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=33.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~ 109 (284)
...+.+++|...-..+... . .-..+.+|.|.|..+... +.+....+. ..+..+.. ..=+||.||+|+.+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~-----~---~~~~d~~ilv~d~~~~~s-f~~~~~~~~-~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 50 NLGLWDTAGQEDYDRLRPL-----S---YPQTDVFLICFSLVSPAS-FENVRAKWY-PEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred EEEEEECCCchhhhhhhhh-----h---cCCCCEEEEEEECCCHHH-HHHHHHHHH-HHHHHhCCCCCEEEEeeChhhcc
Confidence 3456777875433222111 1 124678899999977432 221100011 11122211 23466669999854
No 362
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=30.17 E-value=34 Score=32.12 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=26.6
Q ss_pred HHhhcCEEEEccCCCCChhHH---HHHH--HHHHHhCCCCceeee
Q 023301 93 QVAYADRIILNKIDLVTETEL---GSLT--ERIKHINAMAPVKLA 132 (284)
Q Consensus 93 Qi~~Ad~ivlnK~D~~~~~~~---~~~~--~~l~~~np~a~i~~~ 132 (284)
....||+||||=|--...++. +.+. +.+++.||++.|+.+
T Consensus 34 ~~~~aDviiiNTC~v~~~a~~k~~~~i~~~~~~k~~~p~~~ivv~ 78 (437)
T PRK14331 34 DWEEADLILVNTCTIREKPDQKVLSHLGEYKKIKEKNPNALIGVC 78 (437)
T ss_pred CcccCCEEEEeCcceecHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 345699999999866544442 2221 346778899988765
No 363
>PRK11617 endonuclease V; Provisional
Probab=29.92 E-value=57 Score=27.73 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHH
Q 023301 19 LLQLAKKKQGQFDHIVIETTGLAKPAP 45 (284)
Q Consensus 19 l~~l~~~~~~~~d~iiIE~sG~a~p~~ 45 (284)
+.+++++-...||.|+|+..|+++|..
T Consensus 87 ~l~al~~l~~~PdlllvDG~G~~HPR~ 113 (224)
T PRK11617 87 LLAAWEQLSQKPDLVFVDGHGIAHPRR 113 (224)
T ss_pred HHHHHHhcCcCCCEEEEcCceeECCCC
Confidence 444444224689999999999999975
No 364
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=29.66 E-value=2e+02 Score=29.04 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=12.0
Q ss_pred ccCCCCChhHHHHHHHHHHHhCC
Q 023301 103 NKIDLVTETELGSLTERIKHINA 125 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l~~~np 125 (284)
.+.+..+-..+.+..+.++..|+
T Consensus 686 ~~~~~~~~~~~~~~~~~l~~~~~ 708 (754)
T TIGR01005 686 TAYDRVVVECGRADAQGISRLNG 708 (754)
T ss_pred EEeCceeHHHHHHHHHHHHhcCC
Confidence 44455555555555555555554
No 365
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=28.70 E-value=2.9e+02 Score=23.40 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=32.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDLV 108 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~~ 108 (284)
..-|.+|+|--....+... . .-..+.+|.|.|..+.... .+....++ ..+.+....+- ++|.||+|+.
T Consensus 62 ~l~iwDTaG~e~~~~~~~~-----~---~~~ad~vIlVyDit~~~Sf-~~~~~~w~-~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 62 ELSLWDTSGSPYYDNVRPL-----C---YSDSDAVLLCFDISRPETV-DSALKKWK-AEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred EEEEEeCCCchhhHHHHHH-----H---cCCCcEEEEEEECCChHHH-HHHHHHHH-HHHHHhCCCCCEEEEEECcccc
Confidence 3445677775443332221 1 1245678899999774432 11000111 11222112222 6677999984
No 366
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.57 E-value=31 Score=32.37 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=41.6
Q ss_pred EEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhH---HHHHH--HHHHHhCCCCceeee-ccCCCC
Q 023301 65 VITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETE---LGSLT--ERIKHINAMAPVKLA-KYGSVD 138 (284)
Q Consensus 65 vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~---~~~~~--~~l~~~np~a~i~~~-~~g~v~ 138 (284)
-+-.+|...+...+...+. ...+....||+|++|=|--....+ +..++ +.+++.||.++|+.+ .+....
T Consensus 14 ~~N~~ds~~~~~~l~~~g~-----~~~~~~~~aDvviinTC~v~~~a~~~~~~~i~~~~~~k~~~p~~~vvvgGc~as~~ 88 (444)
T PRK14325 14 QMNEYDSSKMADLLGAEGY-----ELTDDPEEADLILLNTCSIREKAQEKVFSELGRWRKLKEKNPDLIIGVGGCVAQQE 88 (444)
T ss_pred CCcHHHHHHHHHHHHHCcC-----EECCCcCCCCEEEEEcceeeehHHHHHHHHHHHHHHHHHhCCCCEEEEECchhccC
Confidence 3444555555555543321 123445679999999886544433 22222 335778899988764 334444
Q ss_pred hhhhh
Q 023301 139 MDFVL 143 (284)
Q Consensus 139 ~~~l~ 143 (284)
++.++
T Consensus 89 ~ee~~ 93 (444)
T PRK14325 89 GEEIL 93 (444)
T ss_pred HHHHH
Confidence 55444
No 367
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=28.52 E-value=2.5e+02 Score=23.02 Aligned_cols=41 Identities=10% Similarity=0.071 Sum_probs=23.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
.++|+|+|.+.|......++..+. .-..+.++.|+++..+.
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~-------~~~ad~vliv~~p~~~s 155 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIR-------EGKADEIYIVTSGEFMA 155 (212)
T ss_pred cCCCEEEEecCCCceecccccccc-------cccCcEEEEEecccHHH
Confidence 579999999965443222211111 01345678888886654
No 368
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=28.48 E-value=81 Score=24.56 Aligned_cols=83 Identities=25% Similarity=0.428 Sum_probs=44.0
Q ss_pred ceeeeeeCc--hHHH--HHHHHHHhhcCCCCEEEE-------ecCCCCCcHHHHHHhcccccccc---eeeec-eEEEEE
Q 023301 5 GCLCCTVRG--DLVK--MLLQLAKKKQGQFDHIVI-------ETTGLAKPAPVIETFCTDELVSQ---YVKLD-GVITLV 69 (284)
Q Consensus 5 GCiCCs~~~--dl~~--~l~~l~~~~~~~~d~iiI-------E~sG~a~p~~i~~~l~~~~~l~~---~~~l~-~vv~vv 69 (284)
-|.-||..+ ||.. .+.++.. ++.++-|+| |.+|++--.- + ..+|.++. .+.|. .|..++
T Consensus 40 ECfVctaAGAMDLEnQ~Rvk~~aE--k~g~eNvvVllGaaeaEaaglaAETV---t-~GDPTfAGPLAGV~LgL~vYHiv 113 (154)
T PRK13265 40 ECFVUTAAGAMDLENQKRVKDLAE--KFGAENVVVILGAAEAEAAGLAAETV---T-NGDPTFAGPLAGVQLGLRVYHVV 113 (154)
T ss_pred eEEEeecccccchHHHHHHHHHHH--hcCCccEEEEecccchhhccceeeee---c-cCCCcccccccCCccCceeEEec
Confidence 487788654 5644 4777877 677766555 6666653110 0 12333321 22222 255666
Q ss_pred cccchHHhhhhcCCccchHHHHHHHhhcCEEE
Q 023301 70 DSKHAMQHLNEVKPRFVVNEAVEQVAYADRII 101 (284)
Q Consensus 70 D~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~iv 101 (284)
.+.- .... ++ ....+|+..-..|+
T Consensus 114 EpE~-K~~~---d~----~vyeeQigmmEMVl 137 (154)
T PRK13265 114 EPEI-KEEV---DP----AVYEEQISMMEMVL 137 (154)
T ss_pred CHHH-Hhhc---CH----HHHHHhhhheeeee
Confidence 6633 2222 11 34578998887764
No 369
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=28.35 E-value=4.2e+02 Score=24.42 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=23.8
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
.++|+|||.|+.......+- .|. .-+.||+.+.+..+
T Consensus 233 ~~YD~IiIDtpP~l~~~t~n-al~---------AaD~viiP~~~~~~ 269 (388)
T PRK13705 233 HDYDVIVIDSAPNLGIGTIN-VVC---------AADVLIVPTPAELF 269 (388)
T ss_pred ccCCEEEEECCCchhHHHHH-HHH---------HcCEEEEecCCcHH
Confidence 57999999998776654322 222 22457777777654
No 370
>PRK10537 voltage-gated potassium channel; Provisional
Probab=28.20 E-value=4.9e+02 Score=24.14 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=30.8
Q ss_pred HHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhh
Q 023301 91 VEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFV 142 (284)
Q Consensus 91 ~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l 142 (284)
..-++.|+.|++.--| +.+.+ .+...+|++||+.+++.....+-+.+.+
T Consensus 297 ~AgI~~A~aVI~~t~d--D~~Nl-~ivL~ar~l~p~~kIIa~v~~~~~~~~L 345 (393)
T PRK10537 297 KAGAARARAILALRDN--DADNA-FVVLAAKEMSSDVKTVAAVNDSKNLEKI 345 (393)
T ss_pred hcCcccCCEEEEcCCC--hHHHH-HHHHHHHHhCCCCcEEEEECCHHHHHHH
Confidence 4567789988886544 23333 3445689999999988654433333333
No 371
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=28.16 E-value=1e+02 Score=26.09 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=12.9
Q ss_pred EEEEccCCCCChhHHH
Q 023301 99 RIILNKIDLVTETELG 114 (284)
Q Consensus 99 ~ivlnK~D~~~~~~~~ 114 (284)
++|+||+|+.+.++.+
T Consensus 180 iiV~NK~Dl~~~~~~~ 195 (233)
T cd01896 180 LYVYNKIDLISIEELD 195 (233)
T ss_pred EEEEECccCCCHHHHH
Confidence 4888999998876665
No 372
>PRK00784 cobyric acid synthase; Provisional
Probab=27.99 E-value=2.5e+02 Score=26.80 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=22.4
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccc
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKH 73 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~ 73 (284)
.+.|+||||..|-..-.++.+.=.....+...+.+ .||.|+|+..
T Consensus 124 ~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~l~~-PVILV~~~~~ 168 (488)
T PRK00784 124 AEYDVVVVEGAGSPAEINLRDRDIANMGFAEAADA-PVILVADIDR 168 (488)
T ss_pred hcCCEEEEECCCCccccCcccCCchhHHHHHHcCC-CEEEEEeCCc
Confidence 46899999987433211111100000122233344 4788999855
No 373
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=27.96 E-value=67 Score=26.72 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=23.0
Q ss_pred HHHhhcCEEEEccCCC--CChhHHHHHHHHHH
Q 023301 92 EQVAYADRIILNKIDL--VTETELGSLTERIK 121 (284)
Q Consensus 92 ~Qi~~Ad~ivlnK~D~--~~~~~~~~~~~~l~ 121 (284)
++|+.+|+||++.... .++++.+.++++++
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~ 79 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYVE 79 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHH
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHH
Confidence 5688999999999863 68889999999988
No 374
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=27.95 E-value=2.1e+02 Score=28.86 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=11.6
Q ss_pred EEEEccCCCCChhHHHHHHHHHH
Q 023301 99 RIILNKIDLVTETELGSLTERIK 121 (284)
Q Consensus 99 ~ivlnK~D~~~~~~~~~~~~~l~ 121 (284)
+|++.+.+..+..++....+.++
T Consensus 667 ~llVvr~~~t~~~~~~~~~~~l~ 689 (726)
T PRK09841 667 SLLVARFGLNTAKEVSLSMQRLE 689 (726)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 44555666655444444444443
No 375
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=27.80 E-value=1.5e+02 Score=29.23 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=36.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
...|+.|+|......+... ..-..+.++.|+|+..-.+. .. ..... ...+....=+|++||+|+.+
T Consensus 70 ~l~~iDTpG~e~f~~l~~~--------~~~~aD~~IlVvD~~~g~~~-qt---~e~i~-~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKR--------GGALADLAILIVDINEGFKP-QT---QEALN-ILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred cEEEEECCCcHhHHHHHHH--------HHhhCCEEEEEEECCcCCCH-hH---HHHHH-HHHHcCCCEEEEEECCCccc
Confidence 3779999996544432211 11256678999999752111 00 00001 11223445688889999974
No 376
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=27.70 E-value=38 Score=30.29 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=25.7
Q ss_pred ceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCC
Q 023301 63 DGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDL 107 (284)
Q Consensus 63 ~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~ 107 (284)
+--|+|+|+.+.... ...-|.....+-..+++.||.||+|+.+.
T Consensus 139 D~~IvlvD~~~~fgn-g~lLPaGpLREp~~~l~raD~vvv~~~~~ 182 (311)
T TIGR00682 139 DVEIVVVDGQRPFGN-GFLLPAGPLREFPKRLKSADAVIVNGGEN 182 (311)
T ss_pred CeEEEEECCCCCCCC-CcccCCcCCCCChhhhhhCCEEEEeCCcc
Confidence 344677777653211 00112222233468999999999999854
No 377
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=27.49 E-value=31 Score=32.41 Aligned_cols=73 Identities=18% Similarity=0.172 Sum_probs=39.8
Q ss_pred EEEEcccchHHhhhhc-CCccchHHHHHHHhhcCEEEEccCCCCChhHHH---HHH--HHHHHhCCCCceeee-ccCCCC
Q 023301 66 ITLVDSKHAMQHLNEV-KPRFVVNEAVEQVAYADRIILNKIDLVTETELG---SLT--ERIKHINAMAPVKLA-KYGSVD 138 (284)
Q Consensus 66 v~vvD~~~~~~~l~~~-~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~---~~~--~~l~~~np~a~i~~~-~~g~v~ 138 (284)
+-.+|+..+...+... +-. ..+..+.||+||||=|--...++.+ .+. +.+++.||.+.|+.+ .+....
T Consensus 11 ~N~~dse~~~~~l~~~~G~~-----~~~~~~~aDv~iiNTC~v~~~a~~k~~~~i~~~~~~k~~~~~~~ivv~GC~a~~~ 85 (438)
T TIGR01574 11 MNVRDSEHMAALLTAKEGYA-----LTEDAKEADVLLINTCSVREKAEHKVFGELGGFKKLKKKNPDLIIGVCGCMASHL 85 (438)
T ss_pred CcHHHHHHHHHHHHhcCCcE-----ECCCcccCCEEEEeccCeechHHHHHHHHHHHHHHHHhhCCCcEEEEeCcccccc
Confidence 3445555555555433 211 1233556999999998665444432 221 234566888887543 444444
Q ss_pred hhhhh
Q 023301 139 MDFVL 143 (284)
Q Consensus 139 ~~~l~ 143 (284)
.+.+.
T Consensus 86 ~~~~~ 90 (438)
T TIGR01574 86 GNEIF 90 (438)
T ss_pred HHHHH
Confidence 44443
No 378
>PRK11519 tyrosine kinase; Provisional
Probab=27.23 E-value=2e+02 Score=29.06 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=9.6
Q ss_pred ccCCCCChhHHHHHHHHHH
Q 023301 103 NKIDLVTETELGSLTERIK 121 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l~ 121 (284)
.+.+..+.+++....+.++
T Consensus 666 vr~~~t~~~~~~~~~~~l~ 684 (719)
T PRK11519 666 ARYAVNTLKEVETSLSRFE 684 (719)
T ss_pred EeCCCCCHHHHHHHHHHHH
Confidence 5555555555544444444
No 379
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=26.88 E-value=77 Score=24.67 Aligned_cols=30 Identities=30% Similarity=0.609 Sum_probs=20.4
Q ss_pred CceeeeeeCc--hHHH--HHHHHHHhhcCCCCEEEE
Q 023301 4 NGCLCCTVRG--DLVK--MLLQLAKKKQGQFDHIVI 35 (284)
Q Consensus 4 ~GCiCCs~~~--dl~~--~l~~l~~~~~~~~d~iiI 35 (284)
.-|.-||..+ ||.. .+.++.. ++.++-|+|
T Consensus 38 TeCFVctaagaMDLEnQ~rvk~~aE--k~g~enlvV 71 (150)
T PF04723_consen 38 TECFVCTAAGAMDLENQQRVKDLAE--KYGAENLVV 71 (150)
T ss_pred eeEEEecccccccHHHHHHHHHHHH--hcCCccEEE
Confidence 4588898764 5544 4888887 677765555
No 380
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=26.76 E-value=1.4e+02 Score=29.88 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=48.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCCh
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTE 110 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~ 110 (284)
|.++|..+|+.--...-.-+ .....++|.+|.|+.+.+-...-+ ......+ .+=+---+|+.||.|....
T Consensus 207 DivliDsPGld~~se~tswi-----d~~cldaDVfVlV~NaEntlt~se----k~Ff~~v-s~~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWI-----DSFCLDADVFVLVVNAENTLTLSE----KQFFHKV-SEEKPNIFILNNKWDASAS 276 (749)
T ss_pred cceeccCCCCCCchhhhHHH-----HHHhhcCCeEEEEecCccHhHHHH----HHHHHHh-hccCCcEEEEechhhhhcc
Confidence 89999999998765432221 223568888999999998654311 1111111 1112223566688898543
Q ss_pred --hHHHHHHHHHHHhCC
Q 023301 111 --TELGSLTERIKHINA 125 (284)
Q Consensus 111 --~~~~~~~~~l~~~np 125 (284)
+-.+.+++.++++-|
T Consensus 277 e~ec~e~V~~Qi~eL~v 293 (749)
T KOG0448|consen 277 EPECKEDVLKQIHELSV 293 (749)
T ss_pred cHHHHHHHHHHHHhcCc
Confidence 334555555555544
No 381
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.74 E-value=35 Score=32.76 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=42.6
Q ss_pred eceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhH---HH--HHHHHHHHhCCCCceeee-ccC
Q 023301 62 LDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETE---LG--SLTERIKHINAMAPVKLA-KYG 135 (284)
Q Consensus 62 l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~---~~--~~~~~l~~~np~a~i~~~-~~g 135 (284)
+..-.-++|...+...|...+.. ..+..+.||+||||=|--...++ +. ...+.+++.+|.++|+.+ .+.
T Consensus 21 ~GC~~N~~dse~~~~~L~~~G~~-----~~~~~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~~~p~~~VvvgGc~a 95 (502)
T PRK14326 21 YGCQMNVHDSERLAGLLEAAGYV-----RAAEGQDADVVVFNTCAVRENADNRLYGNLGHLAPVKRANPGMQIAVGGCLA 95 (502)
T ss_pred cCCCCcHHHHHHHHHHHHHCCCE-----ECCCcCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHHhCCCCEEEEECccc
Confidence 33344455666666555443311 12334569999999986544432 21 112345778899888764 334
Q ss_pred CCChhhhh
Q 023301 136 SVDMDFVL 143 (284)
Q Consensus 136 ~v~~~~l~ 143 (284)
....+.++
T Consensus 96 ~~~~ee~~ 103 (502)
T PRK14326 96 QKDRDTIL 103 (502)
T ss_pred ccCHHHHH
Confidence 44455544
No 382
>COG1804 CaiB Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
Probab=26.59 E-value=2.8e+02 Score=25.76 Aligned_cols=101 Identities=20% Similarity=0.118 Sum_probs=58.5
Q ss_pred HHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEE
Q 023301 21 QLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRI 100 (284)
Q Consensus 21 ~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~i 100 (284)
+++. .-.-|.|=||.+|.+++.............-....=..-..++|-++-... +++.+=++.||++
T Consensus 27 ~~La--DlGAeVIKVE~P~~gD~~R~~~~~~~~s~~f~~~nR~K~Sv~lDlk~~egr----------e~~~~Lv~~ADVl 94 (396)
T COG1804 27 QLLA--DLGAEVIKVERPGGGDDTRVFAPVADGSAYFLALNRGKRSVALDLKTEEGR----------EILLRLVAGADVL 94 (396)
T ss_pred hHHH--HcCCcEEEecCCCCCCchhccccccCcchHHHHhcCCceEEEeecCCHhHH----------HHHHHHHhhCcee
Confidence 3444 467899999999999987641111000000011223344566777664321 4568899999999
Q ss_pred EEccCCCCChhHHHHH---HHHHHHhCCCCcee-eeccCCC
Q 023301 101 ILNKIDLVTETELGSL---TERIKHINAMAPVK-LAKYGSV 137 (284)
Q Consensus 101 vlnK~D~~~~~~~~~~---~~~l~~~np~a~i~-~~~~g~v 137 (284)
|=|-. +..++++ .+.++++||+--.- .+-||+-
T Consensus 95 ienfr----pG~l~rlGl~ye~L~~~NP~LIy~sisGfGq~ 131 (396)
T COG1804 95 IENFR----PGVLERLGLGYEALRAINPRLIYCSISGFGQT 131 (396)
T ss_pred hcccc----hhHHHHhCCCHHHHHhhCCCeEEEEEeeCCCC
Confidence 97753 3333333 56689999954322 2345653
No 383
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.55 E-value=33 Score=32.02 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=24.9
Q ss_pred HHHhhcCEEEEccCCCCChhH---HHHHHHHHHHhCCCCceeee
Q 023301 92 EQVAYADRIILNKIDLVTETE---LGSLTERIKHINAMAPVKLA 132 (284)
Q Consensus 92 ~Qi~~Ad~ivlnK~D~~~~~~---~~~~~~~l~~~np~a~i~~~ 132 (284)
+..+.||+||||=|--...++ +..+++..+..+|.+.|+.+
T Consensus 23 ~~~~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv~ 66 (420)
T PRK14339 23 QDIKEADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGVC 66 (420)
T ss_pred CCcccCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 345569999999986654433 44444433225677776644
No 384
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.29 E-value=38 Score=31.61 Aligned_cols=74 Identities=11% Similarity=0.124 Sum_probs=40.5
Q ss_pred EEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHH---H--HHHHHhCCCCceeee-ccCCCC
Q 023301 65 VITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSL---T--ERIKHINAMAPVKLA-KYGSVD 138 (284)
Q Consensus 65 vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~---~--~~l~~~np~a~i~~~-~~g~v~ 138 (284)
-.-.+|+..+...+...+.. ..+..+.||+||+|=|--...++.+.+ . ..+++.||.+.|+.+ .+.+..
T Consensus 12 ~~N~~dse~~~~~l~~~G~~-----~~~~~~~AD~viiNTC~v~~~a~~~~~~~i~~~~~~~~~~~~~~ivv~GC~~~~~ 86 (418)
T PRK14336 12 QMNQAESERLGRLFELWGYS-----LADKAEDAELVLVNSCVVREHAENKVINRLHLLRKLKNKNPKLKIALTGCLVGQD 86 (418)
T ss_pred CCcHHHHHHHHHHHHHCcCE-----ECCCcccCCEEEEecccEecHHHHHHHHHHHHHHHHHhhCCCCEEEEECChhcCC
Confidence 34455666666555443311 123345699999999966554442222 2 234567788877654 344444
Q ss_pred hhhhh
Q 023301 139 MDFVL 143 (284)
Q Consensus 139 ~~~l~ 143 (284)
.+.+.
T Consensus 87 ~~~l~ 91 (418)
T PRK14336 87 ISLIR 91 (418)
T ss_pred HHHHH
Confidence 54443
No 385
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=26.18 E-value=1.4e+02 Score=23.11 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=28.2
Q ss_pred HHHhhcCEEEEccCCCCC----h--------hHHHHHHHHHHHhCCCCceeeec
Q 023301 92 EQVAYADRIILNKIDLVT----E--------TELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 92 ~Qi~~Ad~ivlnK~D~~~----~--------~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
+.++.||+||++-..... . .-+..+.+.+++.+|++.++..+
T Consensus 65 ~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 65 EALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp GGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred cccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 567779999997654221 1 12466777888889998877654
No 386
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=25.96 E-value=3e+02 Score=20.91 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=43.1
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEE-EEccCCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRI-ILNKIDLVT 109 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~i-vlnK~D~~~ 109 (284)
.-+.+++|......+...+ .-..+.+|.|.|..+-.. +.+.. .++ ..+..... .+-++ +-||.|+.+
T Consensus 50 l~i~D~~g~~~~~~~~~~~--------~~~~~~~ii~fd~~~~~S-~~~~~-~~~-~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 50 LEIWDTSGQERFDSLRDIF--------YRNSDAIIIVFDVTDEES-FENLK-KWL-EEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp EEEEEETTSGGGHHHHHHH--------HTTESEEEEEEETTBHHH-HHTHH-HHH-HHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccccccccc--------cccccccccccccccccc-ccccc-ccc-ccccccccccccceeeeccccccc
Confidence 4456777755444333221 123556778888776443 22211 111 12222222 23344 448888765
Q ss_pred hhH--HHHHHHHHHHhCCCCceeeec
Q 023301 110 ETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 110 ~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
..+ .++.+++.++.+ .+.++++
T Consensus 119 ~~~v~~~~~~~~~~~~~--~~~~e~S 142 (162)
T PF00071_consen 119 EREVSVEEAQEFAKELG--VPYFEVS 142 (162)
T ss_dssp GSSSCHHHHHHHHHHTT--SEEEEEB
T ss_pred cccchhhHHHHHHHHhC--CEEEEEE
Confidence 222 344555665555 6666665
No 387
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=25.85 E-value=1.2e+02 Score=29.91 Aligned_cols=44 Identities=30% Similarity=0.526 Sum_probs=29.9
Q ss_pred CceeeeeeCc----hH-HHHHHHHHHhhcCCCCEEEE-ecCCCCCcHHHHHHh
Q 023301 4 NGCLCCTVRG----DL-VKMLLQLAKKKQGQFDHIVI-ETTGLAKPAPVIETF 50 (284)
Q Consensus 4 ~GCiCCs~~~----dl-~~~l~~l~~~~~~~~d~iiI-E~sG~a~p~~i~~~l 50 (284)
-||||.+..- ++ .+...++. ....|.|-| .+.|++.|..+.+.+
T Consensus 140 ~~~i~yt~sp~~t~e~~~~~ak~l~---~~Gad~I~IkDtaG~l~P~~v~~lv 189 (596)
T PRK14042 140 QGAICYTTSPVHTLDNFLELGKKLA---EMGCDSIAIKDMAGLLTPTVTVELY 189 (596)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHH---HcCCCEEEeCCcccCCCHHHHHHHH
Confidence 4899998752 22 33333333 356787766 999999999887655
No 388
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=25.53 E-value=84 Score=28.51 Aligned_cols=44 Identities=9% Similarity=0.161 Sum_probs=34.2
Q ss_pred HHHHHhhcCEEEEccCCCCC---------hhHHHHHHHHHHHhC--CCCceeeec
Q 023301 90 AVEQVAYADRIILNKIDLVT---------ETELGSLTERIKHIN--AMAPVKLAK 133 (284)
Q Consensus 90 ~~~Qi~~Ad~ivlnK~D~~~---------~~~~~~~~~~l~~~n--p~a~i~~~~ 133 (284)
+...+...-+||++|+|.++ ++.+..|..+||+++ -.|..+.|+
T Consensus 217 Lt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTS 271 (473)
T KOG3905|consen 217 LTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTS 271 (473)
T ss_pred hhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEee
Confidence 56778888899999999954 566889999999877 356666554
No 389
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=25.24 E-value=3.3e+02 Score=21.16 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=6.5
Q ss_pred CEEEEecCCCC
Q 023301 31 DHIVIETTGLA 41 (284)
Q Consensus 31 d~iiIE~sG~a 41 (284)
|+|||+++|-.
T Consensus 64 d~viiD~p~~~ 74 (179)
T cd02036 64 DYILIDSPAGI 74 (179)
T ss_pred CEEEEECCCCC
Confidence 66666665543
No 390
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=25.09 E-value=1.3e+02 Score=29.61 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=30.1
Q ss_pred CceeeeeeCc-----hHHHHHHHHHHhhcCCCCEEEE-ecCCCCCcHHHHHHh
Q 023301 4 NGCLCCTVRG-----DLVKMLLQLAKKKQGQFDHIVI-ETTGLAKPAPVIETF 50 (284)
Q Consensus 4 ~GCiCCs~~~-----dl~~~l~~l~~~~~~~~d~iiI-E~sG~a~p~~i~~~l 50 (284)
.||||++... .+.+.+.++.+ ...|.|.| .++|++.|..+.+.+
T Consensus 140 ~~~i~~t~~p~~t~~~~~~~a~~l~~---~Gad~I~i~Dt~G~~~P~~~~~lv 189 (592)
T PRK09282 140 QGTISYTTSPVHTIEKYVELAKELEE---MGCDSICIKDMAGLLTPYAAYELV 189 (592)
T ss_pred EEEEEeccCCCCCHHHHHHHHHHHHH---cCCCEEEECCcCCCcCHHHHHHHH
Confidence 4789887642 23444555544 56777666 999999999876654
No 391
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=24.96 E-value=3.3e+02 Score=21.79 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=23.7
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCC
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVT 109 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~ 109 (284)
..+++|.|.|..+... +.+....+. ..+..... ..=+||.||.|+.+
T Consensus 74 ~a~~~ilvydit~~~S-f~~~~~~w~-~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 74 QTNVFIICFSIASPSS-YENVRHKWH-PEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHH-HHHHhhCCCCCEEEEEeChhhhc
Confidence 4667888888876443 222110011 11111111 23367779999954
No 392
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=24.44 E-value=1.4e+02 Score=21.31 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=36.7
Q ss_pred hHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCcee
Q 023301 87 VNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVK 130 (284)
Q Consensus 87 ~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~ 130 (284)
...+.+.+..++.|++-....++..++..++..++..+-...++
T Consensus 10 v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~~~~~~v~ 53 (100)
T PF00466_consen 10 VEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKKGGKFKVV 53 (100)
T ss_dssp HHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHHTEEEEEC
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhcCcEEEEe
Confidence 35678899999999999999999999999999999886544443
No 393
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=24.30 E-value=1.1e+02 Score=27.72 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=25.1
Q ss_pred cCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhhh
Q 023301 97 ADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFVL 143 (284)
Q Consensus 97 Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l~ 143 (284)
.-++|+||+|+.+.+++..+.+.. ++-.+.. .-.++++.|.
T Consensus 241 p~l~v~NKiD~~~~e~~~~l~~~~-----~~v~isa-~~~~nld~L~ 281 (365)
T COG1163 241 PALYVVNKIDLPGLEELERLARKP-----NSVPISA-KKGINLDELK 281 (365)
T ss_pred eeEEEEecccccCHHHHHHHHhcc-----ceEEEec-ccCCCHHHHH
Confidence 457788999999977776665433 2333222 3355666554
No 394
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=24.13 E-value=1.5e+02 Score=28.55 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=28.7
Q ss_pred CceeeeeeC--c--hHHHH-HHHHHHhhcCCCCEEEE-ecCCCCCcHHHHHHh
Q 023301 4 NGCLCCTVR--G--DLVKM-LLQLAKKKQGQFDHIVI-ETTGLAKPAPVIETF 50 (284)
Q Consensus 4 ~GCiCCs~~--~--dl~~~-l~~l~~~~~~~~d~iiI-E~sG~a~p~~i~~~l 50 (284)
-||||++.. . ++... ..++. ....|.|-| .+.|+..|..+.+.+
T Consensus 141 ~~~i~yt~sp~~t~e~~~~~a~~l~---~~Gad~I~IkDtaGll~P~~~~~LV 190 (499)
T PRK12330 141 QGTICYTVSPIHTVEGFVEQAKRLL---DMGADSICIKDMAALLKPQPAYDIV 190 (499)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHH---HcCCCEEEeCCCccCCCHHHHHHHH
Confidence 379999653 2 22222 33333 356788766 999999999877654
No 395
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=23.99 E-value=82 Score=28.27 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=23.3
Q ss_pred cCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhh
Q 023301 97 ADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFV 142 (284)
Q Consensus 97 Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l 142 (284)
.-++|+||+|+.+.++. .+.++...+...++..+. ....+..+
T Consensus 216 PvI~VlNK~Dl~~~~~~---~~~l~~~~~~~~iI~iSA~~e~~L~~L 259 (318)
T cd01899 216 PMVIAANKADIPDAENN---ISKLRLKYPDEIVVPTSAEAELALRRA 259 (318)
T ss_pred cEEEEEEHHHccChHHH---HHHHHhhCCCCeEEEEeCcccccHHHH
Confidence 34588899998655443 234444445556665543 23344443
No 396
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.73 E-value=1.5e+02 Score=21.86 Aligned_cols=38 Identities=24% Similarity=0.188 Sum_probs=30.0
Q ss_pred hhcCEEEEccCCCCChhHHHHHHHHHHHhCC-CCceeee
Q 023301 95 AYADRIILNKIDLVTETELGSLTERIKHINA-MAPVKLA 132 (284)
Q Consensus 95 ~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np-~a~i~~~ 132 (284)
..+|+|+++=++........++.+.+++.+| +.+|+..
T Consensus 49 ~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 49 EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 4689999998877677778888888998887 6666544
No 397
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.70 E-value=68 Score=30.89 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=39.5
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHH---HHHH--HHHHHhCCCCceeee
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETEL---GSLT--ERIKHINAMAPVKLA 132 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~---~~~~--~~l~~~np~a~i~~~ 132 (284)
.+..-.-..|...+...|...+.. ..+..+.||+||+|=|--...++. ..+. +.+++.||++.|+.+
T Consensus 73 T~GC~~N~~Dse~~~~~L~~~Gy~-----~~~~~~~ADviiiNTC~V~~~Ae~k~~~~i~~l~~~k~~~p~~~i~v~ 144 (509)
T PRK14327 73 TYGCQMNEHDTEVMAGIFEALGYE-----PTDDTEDADVILLNTCAIRENAENKVFGEIGHLKHLKRENPDLLIGVC 144 (509)
T ss_pred eCCCCccHHHHHHHHHHHHHCcCE-----ECCCcCCCCEEEEECCCCccHHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 344444556776666666554321 124456699999999976555442 2331 234677898877643
No 398
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=23.42 E-value=69 Score=34.27 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=44.8
Q ss_pred CEEEEecCCCCCcH------------HHHHHhcccccccceeeeceEEEEEcccchHHhhhh----cC--CccchHHHHH
Q 023301 31 DHIVIETTGLAKPA------------PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNE----VK--PRFVVNEAVE 92 (284)
Q Consensus 31 d~iiIE~sG~a~p~------------~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~----~~--~~~~~~~~~~ 92 (284)
+.|+|+|.|-.... .+++.|. ..+.+--+++||.+||...+...-.. .. -+....++.+
T Consensus 162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~---k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~ 238 (1169)
T TIGR03348 162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLR---KHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELRE 238 (1169)
T ss_pred CEEEEcCCCccccCCCcccccHHHHHHHHHHHH---HhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67999999944211 2333322 23345679999999999987632110 00 0111223333
Q ss_pred H--HhhcCEEEEccCCCCC
Q 023301 93 Q--VAYADRIILNKIDLVT 109 (284)
Q Consensus 93 Q--i~~Ad~ivlnK~D~~~ 109 (284)
+ +...=.|++||+|+..
T Consensus 239 ~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 239 QLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HhCCCCCEEEEEecchhhc
Confidence 3 3567789999999875
No 399
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=23.21 E-value=87 Score=29.07 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=39.3
Q ss_pred EEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChh--HHHHHHHHHHHhCCCCceeee-ccCCCChhhhh
Q 023301 68 LVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTET--ELGSLTERIKHINAMAPVKLA-KYGSVDMDFVL 143 (284)
Q Consensus 68 vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~--~~~~~~~~l~~~np~a~i~~~-~~g~v~~~~l~ 143 (284)
.+|...+...+...+-. ..+.-..||+|+||=+--.... +..++...+++.+|+++|+.+ .+....++.+.
T Consensus 10 ~~ds~~~~~~l~~~g~~-----~~~~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~~~~ee~~ 83 (414)
T TIGR01579 10 QYESESLKNQLIQKGYE-----VVPDEDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQSNPKELA 83 (414)
T ss_pred HHHHHHHHHHHHHCcCE-----ECCCcccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccccCHHHHh
Confidence 44555555555433211 1223345999999987654332 233444556778898887754 33444455544
No 400
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=23.13 E-value=1.6e+02 Score=20.74 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=26.0
Q ss_pred CceeeeeeCchHHHHHHHHHHhhcCCCCEEEEe--cCCCCCcHHHHHHhc
Q 023301 4 NGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIE--TTGLAKPAPVIETFC 51 (284)
Q Consensus 4 ~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE--~sG~a~p~~i~~~l~ 51 (284)
.||-.|..-.+..+++..+. +..||.|+++ -++ .+..++++.+.
T Consensus 21 ~~~~~v~~~~~~~~~~~~~~---~~~~d~iiid~~~~~-~~~~~~~~~i~ 66 (112)
T PF00072_consen 21 AGYEEVTTASSGEEALELLK---KHPPDLIIIDLELPD-GDGLELLEQIR 66 (112)
T ss_dssp TTEEEEEEESSHHHHHHHHH---HSTESEEEEESSSSS-SBHHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHhc---ccCceEEEEEeeecc-ccccccccccc
Confidence 56655665566666665553 3568888876 344 34445555554
No 401
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=23.07 E-value=3.4e+02 Score=20.58 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
.+|+|||.+++..+... ...+ ...+.++.|+++....
T Consensus 44 ~yd~VIiD~p~~~~~~~-~~~l---------~~aD~vviv~~~~~~s 80 (139)
T cd02038 44 DYDYIIIDTGAGISDNV-LDFF---------LAADEVIVVTTPEPTS 80 (139)
T ss_pred CCCEEEEECCCCCCHHH-HHHH---------HhCCeEEEEcCCChhH
Confidence 47899999887554432 2221 1235688888887543
No 402
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=23.03 E-value=1.9e+02 Score=26.65 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=45.7
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCC
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDL 107 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~ 107 (284)
.+..-.+|+|.|.-.+..-. .|. +....|.++ +|.|+|-.++...++.. +..- ..-+++.+.|.+.
T Consensus 210 ar~sG~iInT~g~i~~egy~-~ll---hai~~f~v~-vviVLg~ErLy~~lkk~--------~~~~-~~v~vv~lpKsgG 275 (415)
T KOG2749|consen 210 ARVSGCIINTCGWIEGEGYA-ALL---HAIKAFEVD-VVIVLGQERLYSSLKKD--------LPPK-KNVRVVKLPKSGG 275 (415)
T ss_pred hcccceEEeccceeccccHH-HHH---HHHHHcCcc-EEEEeccHHHHHHHHhh--------cccc-ccceEEEecCCCC
Confidence 35566899999999866533 332 133567776 77788888887765532 1111 6678999999988
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
+-
T Consensus 276 v~ 277 (415)
T KOG2749|consen 276 VV 277 (415)
T ss_pred eE
Confidence 64
No 403
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=22.93 E-value=2e+02 Score=23.11 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=45.8
Q ss_pred EEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHh--CCCCceeeeccCCCChhhh
Q 023301 65 VITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHI--NAMAPVKLAKYGSVDMDFV 142 (284)
Q Consensus 65 vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~--np~a~i~~~~~g~v~~~~l 142 (284)
-+++-.+..+... +. ....+.+=|+.||+|+.|-.= .++..+.+...+... +.++.++..+.. .+-.+
T Consensus 32 ~l~~~~~~el~~~-----~~-~~~~~~~aia~ADii~~smlF--~ed~v~~l~~~L~~~r~~~~a~i~~~sap--elm~l 101 (164)
T PF11965_consen 32 ELSVFAAAELERD-----PE-ALEECEAAIARADIIFGSMLF--IEDHVRPLLPALEARRDHCPAMIIFESAP--ELMRL 101 (164)
T ss_pred EEEEEeHHHhhcC-----hH-HHHHHHHHHHhCCEEEeehhh--hHHHHHHHHHHHHHHHccCCEEEEEcCHH--HHHHH
Confidence 4556665554322 11 124568899999999999874 366788888888887 334444433321 22233
Q ss_pred hcCCCCCc
Q 023301 143 LGVGGYDL 150 (284)
Q Consensus 143 ~~~~~~~~ 150 (284)
..++.|+.
T Consensus 102 TrlG~f~m 109 (164)
T PF11965_consen 102 TRLGKFSM 109 (164)
T ss_pred hcccceec
Confidence 44566664
No 404
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=22.51 E-value=1.2e+02 Score=25.93 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhh
Q 023301 18 MLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHL 78 (284)
Q Consensus 18 ~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l 78 (284)
.+..+.+ ...+|+|+||+-|.-.-- +...-..+|.+.. .-+.||.|+....+-.-+
T Consensus 88 ~l~~l~~--~~~~D~vLVEADGAk~~P-lKaP~~~EPVIP~--~t~~VI~V~gl~alG~pl 143 (232)
T TIGR03172 88 TVDDLSD--FQHFDVILVEADGAKCRP-LKAPSDHEPVIPK--SSTTVIGVAGISVVGEKL 143 (232)
T ss_pred HHHHHHh--ccCCCEEEEECCCcCCCc-ccCCCCCCCccCC--CCCEEEEEeCHHHcCCcC
Confidence 3444444 234699999999987621 1111112343332 345578887776655444
No 405
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=22.44 E-value=4.4e+02 Score=21.62 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=46.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH----hh---cCEEE
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV----AY---ADRII 101 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi----~~---Ad~iv 101 (284)
....-|+.|.|-.++....+.... -.+.|- -|..+.|...|... ..+.+|| .. .=++|
T Consensus 50 ~~~l~ilDt~g~~~~~~~~~~~~~---~~~gF~--lVysitd~~SF~~~----------~~l~~~I~r~~~~~~~PivlV 114 (196)
T KOG0395|consen 50 VCMLEILDTAGQEEFSAMRDLYIR---NGDGFL--LVYSITDRSSFEEA----------KQLREQILRVKGRDDVPIILV 114 (196)
T ss_pred EEEEEEEcCCCcccChHHHHHhhc---cCcEEE--EEEECCCHHHHHHH----------HHHHHHHHHhhCcCCCCEEEE
Confidence 344558889995555543332211 113331 24455555555432 1234444 22 33778
Q ss_pred EccCCCCChhH--HHHHHHHHHHhCCCCceeeeccC-CCChhhhh
Q 023301 102 LNKIDLVTETE--LGSLTERIKHINAMAPVKLAKYG-SVDMDFVL 143 (284)
Q Consensus 102 lnK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~g-~v~~~~l~ 143 (284)
-||+|+....+ .+..++..+ .+- +..++++.. ..+.+.+|
T Consensus 115 GNK~Dl~~~R~V~~eeg~~la~-~~~-~~f~E~Sak~~~~v~~~F 157 (196)
T KOG0395|consen 115 GNKCDLERERQVSEEEGKALAR-SWG-CAFIETSAKLNYNVDEVF 157 (196)
T ss_pred EEcccchhccccCHHHHHHHHH-hcC-CcEEEeeccCCcCHHHHH
Confidence 89999965212 122222222 222 446666642 34555554
No 406
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=22.27 E-value=2e+02 Score=24.13 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=24.3
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc-CEEEEccCCCCC
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA-DRIILNKIDLVT 109 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A-d~ivlnK~D~~~ 109 (284)
..+.++.|.|..+... +.+....+. .........+ =+||.||+|+.+
T Consensus 72 ~~d~illvfdis~~~S-f~~i~~~w~-~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 72 DSDAVLICFDISRPET-LDSVLKKWQ-GETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHH-HHHHhhCCCCCEEEEEECccccc
Confidence 6677899999887543 222100011 1111222233 345559999854
No 407
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=22.15 E-value=1.7e+02 Score=21.09 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=19.0
Q ss_pred HhhcCEEEEcc--CCCCChhHHHHHHHHHHHh---CCCCceee
Q 023301 94 VAYADRIILNK--IDLVTETELGSLTERIKHI---NAMAPVKL 131 (284)
Q Consensus 94 i~~Ad~ivlnK--~D~~~~~~~~~~~~~l~~~---np~a~i~~ 131 (284)
+..+|.+++-= +|..+-+.+..+.++++.+ ++..+++.
T Consensus 71 ~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piil 113 (119)
T PF08477_consen 71 LKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIIL 113 (119)
T ss_dssp HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEE
T ss_pred hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEE
Confidence 66677766643 3332233333344445544 35666553
No 408
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=22.12 E-value=96 Score=24.72 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=16.2
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHH
Q 023301 189 VSSVTIVSEGTLDLDEVDDWLERL 212 (284)
Q Consensus 189 ~~s~~~~~~~~~~~~~l~~~l~~l 212 (284)
+--+++.+..+.+.+...+||-+.
T Consensus 157 vcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 157 VCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred EEEEEEEEcCCccHHHHHHHHHHH
Confidence 344556666777778888887654
No 409
>PF06265 DUF1027: Protein of unknown function (DUF1027); InterPro: IPR009370 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2KL5_A.
Probab=22.02 E-value=1.3e+02 Score=21.44 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=21.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-------CCceEEEEEEEEec
Q 023301 192 VTIVSEGTLDLDEVDDWLERLIEEK-------GEDLYRMKGILSVS 230 (284)
Q Consensus 192 ~~~~~~~~~~~~~l~~~l~~l~~~~-------~~~i~R~KG~v~~~ 230 (284)
+....+..|+.+.|.+-...++.++ +.+-+|.|||..-.
T Consensus 10 lv~n~rd~fd~e~f~~Rys~iL~kYDYIVGDwg~~QLRLkGFy~d~ 55 (86)
T PF06265_consen 10 LVENYRDAFDEEAFAERYSDILDKYDYIVGDWGYEQLRLKGFYKDD 55 (86)
T ss_dssp EEEEETT---HHHHHHH--GGGGGTSEEEEE-TTSS-EEEE----S
T ss_pred EeehhhhhcCHHHHHHHHHHHHHhCCeEEEccccceeeecccccCC
Confidence 4555677899999999888877553 46789999999754
No 410
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=21.67 E-value=1.4e+02 Score=29.97 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=43.4
Q ss_pred EEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCCh---
Q 023301 34 VIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTE--- 110 (284)
Q Consensus 34 iIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~--- 110 (284)
++.|+|=-+...=. .+..-..++||.|||+..-.+.--+ +-+. ..-|=..|=+++|||+|+.-.
T Consensus 201 ilDTPGHVnF~DE~--------ta~l~~sDgvVlvvDv~EGVmlntE---r~ik--haiq~~~~i~vviNKiDRLilELk 267 (971)
T KOG0468|consen 201 ILDTPGHVNFSDET--------TASLRLSDGVVLVVDVAEGVMLNTE---RIIK--HAIQNRLPIVVVINKVDRLILELK 267 (971)
T ss_pred eecCCCcccchHHH--------HHHhhhcceEEEEEEcccCceeeHH---HHHH--HHHhccCcEEEEEehhHHHHHHhc
Confidence 56777766654311 1112246789999999775542111 1110 123456688999999997421
Q ss_pred ----hHHHHHHHHHHHhC
Q 023301 111 ----TELGSLTERIKHIN 124 (284)
Q Consensus 111 ----~~~~~~~~~l~~~n 124 (284)
+.--+++..+..+|
T Consensus 268 LPP~DAY~KLrHii~~iN 285 (971)
T KOG0468|consen 268 LPPMDAYYKLRHIIDEIN 285 (971)
T ss_pred CChHHHHHHHHHHHHHhc
Confidence 22334555566677
No 411
>PRK11670 antiporter inner membrane protein; Provisional
Probab=21.64 E-value=5.3e+02 Score=23.59 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=26.9
Q ss_pred HHHHHHHHh-hcCCCCEEEEecC-CCCCcHHHHHHhcccccccceeeeceEEEEEcccch
Q 023301 17 KMLLQLAKK-KQGQFDHIVIETT-GLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 17 ~~l~~l~~~-~~~~~d~iiIE~s-G~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
..|.+++.. -...+|||||.++ |+++..-.+. ..+..+.+|.|+-+..+
T Consensus 202 ~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~~~---------~l~aad~viiV~tp~~~ 252 (369)
T PRK11670 202 KALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLA---------QNIPVTGAVVVTTPQDI 252 (369)
T ss_pred HHHHHHHHHHhhccCCEEEEeCCCCCchHHHHHh---------hhccCCeEEEEecCchh
Confidence 345555531 1357999999986 5544321111 12345667777777554
No 412
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=21.32 E-value=43 Score=28.68 Aligned_cols=75 Identities=9% Similarity=0.161 Sum_probs=42.3
Q ss_pred HHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccc--eeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc
Q 023301 20 LQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQ--YVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA 97 (284)
Q Consensus 20 ~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~--~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A 97 (284)
.+.++ ..++|..|+.++|+.....+...-..+..+.. .-.-+.+|.++|...|... . ......+...
T Consensus 158 ~~~l~--~~~~d~afis~~gi~~~~G~~~~~~~ea~~k~~~~~~a~~~ill~D~sKf~~~----~-----~~~~~~l~~i 226 (240)
T PRK10411 158 ISQLK--SLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRS----G-----EARIGHLDEV 226 (240)
T ss_pred HHHHH--hcCCCEEEEeceeECCCCCcccCCHHHHHHHHHHHHHhCcEEEEEeccccCCc----c-----ceEecCHHHC
Confidence 33445 58999999999999743222110000000000 0133457999999997532 0 0114567788
Q ss_pred CEEEEccC
Q 023301 98 DRIILNKI 105 (284)
Q Consensus 98 d~ivlnK~ 105 (284)
|.||-++.
T Consensus 227 d~lITD~~ 234 (240)
T PRK10411 227 THIISDER 234 (240)
T ss_pred CEEEECCC
Confidence 88887764
No 413
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=20.69 E-value=1.4e+02 Score=26.73 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=28.9
Q ss_pred CCceeeeeeC----ch-----HHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHH
Q 023301 3 NNGCLCCTVR----GD-----LVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIE 48 (284)
Q Consensus 3 ~~GCiCCs~~----~d-----l~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~ 48 (284)
+-||||||-- ++ =...|..|.+ .+..-.||=-+-|+-.|.=+..
T Consensus 179 ~~g~ic~SRPtNPTGNVlTdeE~~kldalA~--~~giPliIDnAYg~PFP~iifs 231 (417)
T COG3977 179 STGAICVSRPTNPTGNVLTDEELAKLDALAR--QHGIPLIIDNAYGVPFPGIIFS 231 (417)
T ss_pred ccceEEecCCCCCCCCcccHHHHHHHHHHhh--hcCCcEEEecccCCCCCceecc
Confidence 3599999842 22 2333555555 6777778878888888875443
No 414
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=20.45 E-value=7.6e+02 Score=23.62 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=45.7
Q ss_pred CCCEEEEecC-CCCCcHHHHHHhcccccccceeeeceEEEEEcccchH-HhhhhcCCccchHHHHHH-----HhhcCEEE
Q 023301 29 QFDHIVIETT-GLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM-QHLNEVKPRFVVNEAVEQ-----VAYADRII 101 (284)
Q Consensus 29 ~~d~iiIE~s-G~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~-~~l~~~~~~~~~~~~~~Q-----i~~Ad~iv 101 (284)
+.|.+|||.. |+.+|.---....+...+...+.+ .||.|+|+..-. ..... .+ .-..+- +..+ =||
T Consensus 317 ~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~-PVILV~~~~~g~i~~~~~----~i-~G~~~~l~~~~i~i~-GVI 389 (476)
T PRK06278 317 DYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGF-PVYIVSSCSKSGIEGAFV----ES-MAYYSLLKKMGVKVE-GII 389 (476)
T ss_pred CCCEEEEECCCCcccccCCCCccccHHHHHHHhCC-CEEEEEcCCCChHHHHHH----HH-HHHHHHHhcCCCcEE-EEE
Confidence 5799999998 788872100000011123334444 589999997743 11000 00 001112 2222 478
Q ss_pred EccCCCCChhHHHHHHHHHHHhCCCCcee
Q 023301 102 LNKIDLVTETELGSLTERIKHINAMAPVK 130 (284)
Q Consensus 102 lnK~D~~~~~~~~~~~~~l~~~np~a~i~ 130 (284)
+||.. ++.-.+.++..++. ...+++
T Consensus 390 lN~v~--~~~~~~~~~~~le~--~gvpVL 414 (476)
T PRK06278 390 LNKVY--NMEIFEKVKKIAEN--SNINLI 414 (476)
T ss_pred EECCC--cHHHHHHHHHHHHh--cCCCEE
Confidence 89998 33333444555554 456665
No 415
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=20.30 E-value=3.9e+02 Score=21.38 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=46.2
Q ss_pred CCCceeeeeeCch-HHHHHHHHHHhhcCCCCEEEE------ecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch
Q 023301 2 VNNGCLCCTVRGD-LVKMLLQLAKKKQGQFDHIVI------ETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 2 L~~GCiCCs~~~d-l~~~l~~l~~~~~~~~d~iiI------E~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
|..|--.|.+..+ +..+-..+.+.-...+|.+|| |..|-+--..|.+.+... + +|+|.|-..++
T Consensus 65 LG~gs~gCrLD~~~La~A~~~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~g--i-------PVLt~V~~~~l 135 (159)
T PF10649_consen 65 LGPGSRGCRLDPGALAEASAALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAG--I-------PVLTAVPPRNL 135 (159)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCC--C-------CEEEEECHHHH
Confidence 5667778887644 555544333322367999999 888888878888776542 1 48999999887
Q ss_pred HHhh
Q 023301 75 MQHL 78 (284)
Q Consensus 75 ~~~l 78 (284)
..+.
T Consensus 136 ~~W~ 139 (159)
T PF10649_consen 136 EAWR 139 (159)
T ss_pred HHHH
Confidence 6653
No 416
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=20.26 E-value=1.2e+02 Score=23.83 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=11.0
Q ss_pred CCCCEEEEecCCC
Q 023301 28 GQFDHIVIETTGL 40 (284)
Q Consensus 28 ~~~d~iiIE~sG~ 40 (284)
.++|+||||++|-
T Consensus 98 ~~~D~viid~~g~ 110 (166)
T TIGR00347 98 QKYDFVLVEGAGG 110 (166)
T ss_pred hcCCEEEEEcCCc
Confidence 5799999999873
No 417
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=20.09 E-value=4.3e+02 Score=20.62 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=8.4
Q ss_pred CCCCEEEEecCCCC
Q 023301 28 GQFDHIVIETTGLA 41 (284)
Q Consensus 28 ~~~d~iiIE~sG~a 41 (284)
.++|+|||.+++..
T Consensus 66 ~~yD~VIiD~pp~~ 79 (169)
T cd02037 66 GELDYLVIDMPPGT 79 (169)
T ss_pred CCCCEEEEeCCCCC
Confidence 35666666666543
Done!