Query 023301
Match_columns 284
No_of_seqs 146 out of 1334
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 04:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023301.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023301hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nij_A Hypothetical protein YJ 100.0 9.4E-41 3.2E-45 297.7 25.8 257 1-284 59-318 (318)
2 2wsm_A Hydrogenase expression/ 98.6 4.8E-08 1.6E-12 81.1 5.0 116 2-143 86-205 (221)
3 1yrb_A ATP(GTP)binding protein 98.2 9.8E-07 3.3E-11 75.1 4.4 111 3-119 80-195 (262)
4 3p32_A Probable GTPase RV1496/ 98.1 4.9E-06 1.7E-10 74.5 7.7 110 2-134 147-265 (355)
5 2www_A Methylmalonic aciduria 98.1 8.3E-06 2.8E-10 72.8 9.0 87 3-112 143-229 (349)
6 2p67_A LAO/AO transport system 98.1 2.2E-05 7.7E-10 69.8 11.4 111 3-133 117-241 (341)
7 2hf9_A Probable hydrogenase ni 98.0 3.8E-06 1.3E-10 69.7 4.4 118 2-143 94-215 (226)
8 2qpt_A EH domain-containing pr 97.9 3.4E-05 1.1E-09 73.0 8.6 99 3-121 140-244 (550)
9 2qm8_A GTPase/ATPase; G protei 97.7 0.00012 4.3E-09 64.8 9.3 106 8-133 126-241 (337)
10 3iev_A GTP-binding protein ERA 97.1 0.0007 2.4E-08 59.1 5.9 108 29-143 58-173 (308)
11 4dhe_A Probable GTP-binding pr 97.0 0.0025 8.5E-08 52.1 8.5 106 29-143 78-202 (223)
12 1wf3_A GTP-binding protein; GT 96.9 0.0012 4E-08 57.6 5.5 95 29-133 54-153 (301)
13 1svi_A GTP-binding protein YSX 96.7 0.0051 1.8E-07 49.0 7.5 97 31-133 70-175 (195)
14 3pqc_A Probable GTP-binding pr 96.6 0.0039 1.3E-07 49.5 6.2 98 30-133 68-174 (195)
15 1ega_A Protein (GTP-binding pr 96.0 0.019 6.4E-07 49.8 7.9 95 30-133 56-155 (301)
16 3dm5_A SRP54, signal recogniti 95.1 0.17 5.7E-06 46.3 11.0 94 28-135 181-275 (443)
17 3p26_A Elongation factor 1 alp 94.4 0.066 2.3E-06 49.5 6.6 96 29-133 110-218 (483)
18 3sjy_A Translation initiation 94.2 0.16 5.5E-06 45.7 8.5 100 30-143 75-183 (403)
19 2fh5_B SR-beta, signal recogni 94.1 0.073 2.5E-06 42.9 5.7 85 29-122 53-142 (214)
20 3i8s_A Ferrous iron transport 94.1 0.01 3.5E-07 50.7 0.3 75 29-110 49-127 (274)
21 4bas_A ADP-ribosylation factor 93.7 0.12 4.1E-06 40.8 6.0 104 29-143 62-180 (199)
22 3gee_A MNME, tRNA modification 93.3 0.11 3.9E-06 47.9 5.9 108 29-143 280-389 (476)
23 1z0f_A RAB14, member RAS oncog 93.1 0.22 7.7E-06 38.3 6.7 86 31-133 65-158 (179)
24 2erx_A GTP-binding protein DI- 93.1 0.12 4.2E-06 39.5 5.0 96 31-143 52-158 (172)
25 1wb1_A Translation elongation 93.0 0.17 5.7E-06 46.9 6.6 91 30-134 73-170 (482)
26 2ce2_X GTPase HRAS; signaling 92.8 0.42 1.4E-05 36.0 7.8 101 30-143 51-156 (166)
27 1lnz_A SPO0B-associated GTP-bi 92.8 0.019 6.7E-07 50.7 -0.0 101 30-143 206-321 (342)
28 1u8z_A RAS-related protein RAL 92.6 0.39 1.4E-05 36.3 7.4 90 31-133 53-147 (168)
29 2h57_A ADP-ribosylation factor 92.6 0.37 1.3E-05 37.8 7.4 93 30-133 67-167 (190)
30 2bov_A RAla, RAS-related prote 92.6 0.54 1.8E-05 37.1 8.5 100 31-143 63-168 (206)
31 3geh_A MNME, tRNA modification 92.5 0.054 1.8E-06 49.9 2.6 103 29-143 271-375 (462)
32 1vg8_A RAS-related protein RAB 92.5 0.17 6E-06 40.2 5.4 101 31-143 58-166 (207)
33 2j37_W Signal recognition part 92.5 0.27 9.2E-06 45.7 7.2 73 28-110 182-255 (504)
34 2a9k_A RAS-related protein RAL 92.5 0.4 1.4E-05 37.1 7.4 100 31-143 67-172 (187)
35 3bc1_A RAS-related protein RAB 92.5 0.62 2.1E-05 36.2 8.5 87 30-133 70-165 (195)
36 1jny_A EF-1-alpha, elongation 92.4 0.25 8.6E-06 44.9 6.9 97 29-133 83-193 (435)
37 2ged_A SR-beta, signal recogni 92.4 0.14 4.8E-06 40.3 4.6 86 29-121 90-182 (193)
38 3iby_A Ferrous iron transport 92.4 0.017 6E-07 48.8 -0.9 101 30-143 48-158 (256)
39 1wms_A RAB-9, RAB9, RAS-relate 92.4 0.57 2E-05 35.9 8.1 91 31-133 57-154 (177)
40 2c78_A Elongation factor TU-A; 92.4 0.36 1.2E-05 43.4 7.8 92 29-133 74-174 (405)
41 3izq_1 HBS1P, elongation facto 92.2 0.28 9.7E-06 46.7 7.1 95 30-133 245-352 (611)
42 1u0l_A Probable GTPase ENGC; p 92.1 0.42 1.4E-05 41.1 7.6 81 61-144 84-165 (301)
43 1ky3_A GTP-binding protein YPT 92.1 0.77 2.6E-05 35.2 8.6 101 31-143 59-169 (182)
44 1z08_A RAS-related protein RAB 92.0 0.23 7.9E-06 37.9 5.3 90 31-133 56-149 (170)
45 2y8e_A RAB-protein 6, GH09086P 91.9 0.37 1.3E-05 37.0 6.5 96 31-143 64-168 (179)
46 1f60_A Elongation factor EEF1A 91.7 0.51 1.7E-05 43.2 8.2 96 29-133 84-192 (458)
47 1zj6_A ADP-ribosylation factor 91.7 0.46 1.6E-05 37.1 6.9 103 30-143 60-169 (187)
48 3k53_A Ferrous iron transport 91.7 0.095 3.3E-06 44.3 2.9 64 30-109 50-123 (271)
49 2elf_A Protein translation elo 91.6 0.69 2.4E-05 41.1 8.7 89 29-133 59-157 (370)
50 3lxx_A GTPase IMAP family memb 91.6 0.27 9.1E-06 40.5 5.6 90 30-125 78-183 (239)
51 1upt_A ARL1, ADP-ribosylation 91.6 0.27 9.1E-06 37.6 5.3 77 30-120 51-133 (171)
52 2efe_B Small GTP-binding prote 91.5 0.85 2.9E-05 35.0 8.2 96 31-143 62-166 (181)
53 2gf9_A RAS-related protein RAB 91.4 0.38 1.3E-05 37.6 6.2 86 31-133 72-165 (189)
54 3tw8_B RAS-related protein RAB 91.4 0.36 1.2E-05 37.2 5.9 97 30-143 58-162 (181)
55 2bme_A RAB4A, RAS-related prot 91.2 0.41 1.4E-05 37.1 6.1 96 31-143 60-164 (186)
56 3con_A GTPase NRAS; structural 91.1 0.86 2.9E-05 35.5 7.9 101 30-143 69-174 (190)
57 2fg5_A RAB-22B, RAS-related pr 91.0 0.57 2E-05 36.8 6.8 96 31-143 73-177 (192)
58 2bcg_Y Protein YP2, GTP-bindin 90.9 0.65 2.2E-05 36.8 7.1 96 31-143 58-162 (206)
59 2g6b_A RAS-related protein RAB 90.9 1.1 3.6E-05 34.4 8.2 86 31-133 61-154 (180)
60 1zbd_A Rabphilin-3A; G protein 90.8 1.4 4.7E-05 34.7 9.0 86 31-133 58-151 (203)
61 1kk1_A EIF2gamma; initiation o 90.8 0.63 2.2E-05 41.8 7.7 100 30-143 83-191 (410)
62 1zun_B Sulfate adenylate trans 90.7 0.7 2.4E-05 41.9 7.9 90 30-133 104-204 (434)
63 1ksh_A ARF-like protein 2; sma 90.7 0.26 9E-06 38.4 4.5 80 30-120 62-144 (186)
64 3kl4_A SRP54, signal recogniti 90.7 1 3.4E-05 41.0 8.8 94 28-135 178-274 (433)
65 3tkl_A RAS-related protein RAB 90.6 0.58 2E-05 36.6 6.5 99 31-143 66-170 (196)
66 1z2a_A RAS-related protein RAB 90.6 0.39 1.3E-05 36.4 5.3 90 31-133 55-147 (168)
67 1s0u_A EIF-2-gamma, translatio 90.5 0.5 1.7E-05 42.5 6.7 100 30-143 81-189 (408)
68 2b6h_A ADP-ribosylation factor 90.5 0.48 1.6E-05 37.4 5.9 77 29-120 72-155 (192)
69 2yv5_A YJEQ protein; hydrolase 90.5 0.46 1.6E-05 40.9 6.2 80 60-144 78-161 (302)
70 1zd9_A ADP-ribosylation factor 90.4 0.54 1.8E-05 36.8 6.1 79 31-120 68-149 (188)
71 3lxw_A GTPase IMAP family memb 90.4 0.44 1.5E-05 39.6 5.9 75 29-110 69-154 (247)
72 1j8m_F SRP54, signal recogniti 90.4 2.4 8.1E-05 36.4 10.6 91 28-135 179-275 (297)
73 3j2k_7 ERF3, eukaryotic polype 90.3 0.65 2.2E-05 42.2 7.3 96 29-133 94-205 (439)
74 1c1y_A RAS-related protein RAP 90.3 0.72 2.5E-05 34.8 6.6 91 31-133 52-147 (167)
75 2yc2_C IFT27, small RAB-relate 90.2 0.69 2.3E-05 36.5 6.7 87 30-133 73-171 (208)
76 1d2e_A Elongation factor TU (E 90.1 0.54 1.8E-05 42.1 6.5 92 29-133 65-165 (397)
77 2oil_A CATX-8, RAS-related pro 90.1 0.56 1.9E-05 36.7 6.0 85 32-133 76-168 (193)
78 1z0j_A RAB-22, RAS-related pro 90.0 1 3.6E-05 34.0 7.4 86 31-133 56-149 (170)
79 1kao_A RAP2A; GTP-binding prot 89.9 1.7 5.9E-05 32.5 8.6 89 32-133 53-146 (167)
80 1nrj_B SR-beta, signal recogni 89.8 0.4 1.4E-05 38.5 5.0 81 30-116 55-141 (218)
81 4dcu_A GTP-binding protein ENG 89.6 0.15 5.3E-06 46.6 2.6 105 31-143 244-360 (456)
82 1x3s_A RAS-related protein RAB 89.6 1 3.6E-05 35.0 7.2 96 31-143 65-169 (195)
83 1f6b_A SAR1; gtpases, N-termin 89.5 0.52 1.8E-05 37.5 5.4 81 30-121 69-152 (198)
84 3cnl_A YLQF, putative uncharac 89.5 0.46 1.6E-05 40.1 5.3 55 60-123 20-74 (262)
85 3zvr_A Dynamin-1; hydrolase, D 89.4 0.27 9.2E-06 48.0 4.2 74 29-112 149-234 (772)
86 1xjc_A MOBB protein homolog; s 89.4 0.078 2.7E-06 41.9 0.4 43 2-47 69-113 (169)
87 2fn4_A P23, RAS-related protei 89.3 0.36 1.2E-05 37.1 4.3 100 31-143 58-163 (181)
88 2il1_A RAB12; G-protein, GDP, 89.2 1.1 3.6E-05 35.2 7.1 101 30-143 75-181 (192)
89 3q72_A GTP-binding protein RAD 89.2 1.1 3.7E-05 33.8 6.9 86 31-133 50-144 (166)
90 3t1o_A Gliding protein MGLA; G 89.1 1.8 6.1E-05 33.6 8.3 103 31-143 75-183 (198)
91 1r8s_A ADP-ribosylation factor 89.0 1.3 4.3E-05 33.4 7.1 74 30-118 44-124 (164)
92 2xtp_A GTPase IMAP family memb 89.0 0.2 6.8E-06 41.9 2.6 74 30-110 71-154 (260)
93 2hup_A RAS-related protein RAB 89.0 2 6.7E-05 34.0 8.5 97 31-143 79-184 (201)
94 2f7s_A C25KG, RAS-related prot 88.9 0.71 2.4E-05 37.0 5.9 97 30-143 84-190 (217)
95 1g16_A RAS-related protein SEC 88.9 0.95 3.3E-05 34.2 6.4 86 31-133 53-145 (170)
96 3clv_A RAB5 protein, putative; 88.8 1.6 5.5E-05 33.9 7.8 97 30-143 93-195 (208)
97 1m2o_B GTP-binding protein SAR 88.8 0.54 1.8E-05 37.0 4.9 80 30-120 67-149 (190)
98 3o47_A ADP-ribosylation factor 88.7 0.63 2.2E-05 40.5 5.8 101 29-143 208-318 (329)
99 1puj_A YLQF, conserved hypothe 88.7 0.63 2.1E-05 39.7 5.6 63 60-133 22-86 (282)
100 3t5d_A Septin-7; GTP-binding p 88.5 1.6 5.5E-05 36.7 8.1 65 61-133 115-184 (274)
101 2fu5_C RAS-related protein RAB 88.4 1.1 3.8E-05 34.5 6.5 97 30-143 57-162 (183)
102 2x2e_A Dynamin-1; nitration, h 88.4 0.31 1.1E-05 42.9 3.5 73 29-111 129-213 (353)
103 2a5j_A RAS-related protein RAB 88.3 1 3.5E-05 35.2 6.3 96 31-143 71-175 (191)
104 2nzj_A GTP-binding protein REM 88.3 2.9 9.8E-05 31.6 8.9 96 31-143 53-160 (175)
105 1moz_A ARL1, ADP-ribosylation 88.3 0.61 2.1E-05 36.0 4.9 76 30-120 62-144 (183)
106 1t9h_A YLOQ, probable GTPase E 88.1 0.27 9.3E-06 42.6 2.9 118 5-133 34-157 (307)
107 1z06_A RAS-related protein RAB 87.8 0.78 2.7E-05 35.8 5.4 90 31-133 70-165 (189)
108 3tr5_A RF-3, peptide chain rel 87.8 1.5 5E-05 41.0 7.9 79 29-123 81-162 (528)
109 2cxx_A Probable GTP-binding pr 87.8 1.4 4.9E-05 34.0 6.8 92 31-124 45-150 (190)
110 4djt_A GTP-binding nuclear pro 87.7 0.8 2.7E-05 36.6 5.4 92 30-134 61-156 (218)
111 3kkq_A RAS-related protein M-R 87.5 1.6 5.6E-05 33.5 7.0 98 33-143 69-173 (183)
112 2p5s_A RAS and EF-hand domain 87.3 2.4 8.4E-05 33.2 8.1 63 31-108 78-146 (199)
113 2ew1_A RAS-related protein RAB 87.2 3.5 0.00012 32.6 9.0 99 31-143 76-180 (201)
114 2e87_A Hypothetical protein PH 87.0 1 3.5E-05 39.6 6.1 104 31-143 215-327 (357)
115 2h17_A ADP-ribosylation factor 86.8 0.84 2.9E-05 35.4 4.9 80 30-120 65-147 (181)
116 3a1s_A Iron(II) transport prot 86.5 0.2 6.8E-06 42.2 1.1 97 29-143 51-158 (258)
117 2hxs_A RAB-26, RAS-related pro 86.4 2.3 7.7E-05 32.4 7.2 101 30-143 56-164 (178)
118 2rcn_A Probable GTPase ENGC; Y 86.4 0.46 1.6E-05 42.1 3.4 37 97-133 162-199 (358)
119 3oes_A GTPase rhebl1; small GT 86.1 0.53 1.8E-05 37.3 3.5 88 30-134 72-168 (201)
120 2j69_A Bacterial dynamin-like 85.9 0.58 2E-05 45.3 4.1 69 30-110 174-245 (695)
121 2aka_B Dynamin-1; fusion prote 85.9 0.65 2.2E-05 39.3 4.1 72 29-111 124-208 (299)
122 2v3c_C SRP54, signal recogniti 85.9 1.8 6.2E-05 39.3 7.2 69 28-109 179-252 (432)
123 1r2q_A RAS-related protein RAB 85.8 2.1 7.1E-05 32.2 6.7 86 31-133 56-149 (170)
124 1xzp_A Probable tRNA modificat 85.7 0.45 1.6E-05 43.9 3.2 103 30-143 291-396 (482)
125 2xex_A Elongation factor G; GT 85.6 0.94 3.2E-05 43.8 5.5 81 29-123 74-154 (693)
126 1r5b_A Eukaryotic peptide chai 85.5 1.5 5E-05 40.3 6.5 95 30-133 121-232 (467)
127 2gf0_A GTP-binding protein DI- 85.0 2.8 9.6E-05 32.6 7.3 99 31-143 57-162 (199)
128 2x77_A ADP-ribosylation factor 84.8 0.56 1.9E-05 36.6 3.0 76 30-119 66-147 (189)
129 3avx_A Elongation factor TS, e 84.8 1.6 5.6E-05 44.6 6.9 93 29-134 358-459 (1289)
130 2xxa_A Signal recognition part 84.7 2.2 7.6E-05 38.7 7.2 72 28-109 182-254 (433)
131 3cpj_B GTP-binding protein YPT 84.6 1.4 4.6E-05 35.6 5.3 96 31-143 63-167 (223)
132 4dsu_A GTPase KRAS, isoform 2B 84.6 3.4 0.00012 31.7 7.5 99 32-143 54-157 (189)
133 2qtf_A Protein HFLX, GTP-bindi 84.1 2.3 7.8E-05 37.6 6.9 99 31-133 227-334 (364)
134 2rdo_7 EF-G, elongation factor 83.8 2 6.7E-05 41.6 6.8 80 30-123 82-161 (704)
135 1dar_A EF-G, elongation factor 83.7 1.4 4.9E-05 42.5 5.8 81 29-123 76-156 (691)
136 2h5e_A Peptide chain release f 83.6 2.4 8.3E-05 39.5 7.1 68 29-112 81-151 (529)
137 3qq5_A Small GTP-binding prote 83.6 0.19 6.5E-06 45.7 -0.4 75 31-113 84-158 (423)
138 3mca_A HBS1, elongation factor 83.3 0.31 1.1E-05 46.2 1.0 86 30-124 255-346 (592)
139 1zu4_A FTSY; GTPase, signal re 83.3 6.3 0.00021 34.1 9.3 95 28-135 190-290 (320)
140 1h65_A Chloroplast outer envel 83.2 1 3.6E-05 37.7 4.2 69 31-111 88-170 (270)
141 3dpu_A RAB family protein; roc 83.1 2.2 7.5E-05 39.7 6.7 85 29-133 97-188 (535)
142 3t5g_A GTP-binding protein RHE 83.0 1.8 6.2E-05 33.2 5.3 90 31-133 55-149 (181)
143 1jwy_B Dynamin A GTPase domain 82.9 0.66 2.3E-05 39.7 2.8 77 29-112 130-215 (315)
144 1ek0_A Protein (GTP-binding pr 82.9 3.8 0.00013 30.6 7.0 100 31-143 53-160 (170)
145 2ffh_A Protein (FFH); SRP54, s 82.8 4 0.00014 36.9 8.1 95 28-136 179-274 (425)
146 4dzz_A Plasmid partitioning pr 82.7 7.6 0.00026 30.4 9.0 77 28-124 74-158 (206)
147 3b1v_A Ferrous iron uptake tra 82.5 0.77 2.6E-05 38.9 3.0 97 29-143 48-155 (272)
148 3dz8_A RAS-related protein RAB 82.5 0.85 2.9E-05 35.7 3.2 96 31-143 73-177 (191)
149 3llu_A RAS-related GTP-binding 82.5 3.9 0.00013 32.0 7.1 69 30-112 69-146 (196)
150 2j1l_A RHO-related GTP-binding 82.2 5.1 0.00017 31.8 7.9 72 31-112 83-155 (214)
151 3gj0_A GTP-binding nuclear pro 82.1 0.74 2.5E-05 37.1 2.7 91 30-133 64-155 (221)
152 2atv_A RERG, RAS-like estrogen 81.6 3.5 0.00012 32.2 6.5 89 31-133 77-170 (196)
153 1pui_A ENGB, probable GTP-bind 81.6 3.8 0.00013 32.3 6.8 79 31-115 73-157 (210)
154 3q85_A GTP-binding protein REM 81.2 2.6 9E-05 31.7 5.5 92 30-133 51-147 (169)
155 3vqt_A RF-3, peptide chain rel 81.1 2.8 9.4E-05 39.3 6.5 78 30-122 100-178 (548)
156 3cb4_D GTP-binding protein LEP 80.8 5.7 0.00019 37.6 8.6 100 30-143 71-173 (599)
157 1wxq_A GTP-binding protein; st 80.7 5 0.00017 35.9 7.9 37 95-133 214-250 (397)
158 2atx_A Small GTP binding prote 80.7 8.2 0.00028 29.8 8.4 70 31-110 67-137 (194)
159 3r7w_A Gtpase1, GTP-binding pr 80.6 3 0.0001 35.7 6.2 97 30-134 52-163 (307)
160 3c5c_A RAS-like protein 12; GD 80.5 3.5 0.00012 32.0 6.2 89 32-134 71-166 (187)
161 3lvq_E ARF-GAP with SH3 domain 80.2 2.1 7.2E-05 39.3 5.4 99 30-143 366-475 (497)
162 2dyk_A GTP-binding protein; GT 79.9 0.63 2.2E-05 35.0 1.4 70 31-110 50-123 (161)
163 3reg_A RHO-like small GTPase; 79.5 6.7 0.00023 30.3 7.5 101 32-143 73-179 (194)
164 1vma_A Cell division protein F 79.3 14 0.00049 31.6 10.0 99 28-137 185-287 (306)
165 3c5h_A Glucocorticoid receptor 79.0 6.5 0.00022 32.4 7.6 80 61-143 162-246 (255)
166 2wjg_A FEOB, ferrous iron tran 78.8 1.2 3.9E-05 34.6 2.7 90 30-133 54-149 (188)
167 1mky_A Probable GTP-binding pr 78.6 1.4 4.9E-05 39.8 3.6 108 31-143 229-346 (439)
168 2o52_A RAS-related protein RAB 78.3 3.2 0.00011 32.6 5.3 74 61-143 97-179 (200)
169 4gzl_A RAS-related C3 botulinu 77.8 3.2 0.00011 32.8 5.2 71 32-112 80-151 (204)
170 3qxc_A Dethiobiotin synthetase 77.7 28 0.00095 28.6 11.0 104 18-132 120-227 (242)
171 3bwd_D RAC-like GTP-binding pr 77.0 4.1 0.00014 31.0 5.5 70 32-111 58-128 (182)
172 3t34_A Dynamin-related protein 76.9 3.2 0.00011 36.3 5.3 76 29-111 135-219 (360)
173 1fzq_A ADP-ribosylation factor 76.4 6.7 0.00023 30.1 6.6 78 30-118 60-140 (181)
174 2qu8_A Putative nucleolar GTP- 75.5 1.4 4.7E-05 35.7 2.4 104 30-143 76-196 (228)
175 2j0v_A RAC-like GTP-binding pr 75.4 5 0.00017 31.6 5.7 102 31-143 58-171 (212)
176 3cph_A RAS-related protein SEC 75.1 4.5 0.00015 31.8 5.3 100 31-143 70-173 (213)
177 2hjg_A GTP-binding protein ENG 75.0 4.3 0.00015 36.6 5.7 40 95-134 286-330 (436)
178 3bfv_A CAPA1, CAPB2, membrane 74.8 4.1 0.00014 34.3 5.2 63 28-107 190-256 (271)
179 3fgn_A Dethiobiotin synthetase 74.7 35 0.0012 28.2 10.9 53 17-73 114-168 (251)
180 2oze_A ORF delta'; para, walke 74.6 24 0.00081 29.5 10.1 46 19-74 144-189 (298)
181 3q3j_B RHO-related GTP-binding 74.1 5.2 0.00018 31.8 5.5 69 31-109 76-145 (214)
182 2ywe_A GTP-binding protein LEP 73.8 4.4 0.00015 38.4 5.6 99 31-143 74-175 (600)
183 3ea0_A ATPase, para family; al 73.4 18 0.00062 29.0 8.9 65 28-110 117-187 (245)
184 1udx_A The GTP-binding protein 73.4 3.7 0.00013 37.0 4.8 110 30-143 205-316 (416)
185 3l0i_B RAS-related protein RAB 73.0 0.64 2.2E-05 36.7 -0.3 66 30-110 82-153 (199)
186 3cio_A ETK, tyrosine-protein k 72.8 9.3 0.00032 32.5 7.1 14 29-42 213-226 (299)
187 1ls1_A Signal recognition part 72.5 24 0.00084 29.8 9.7 94 28-135 179-273 (295)
188 2gco_A H9, RHO-related GTP-bin 71.5 8.3 0.00028 30.1 6.1 71 31-111 74-145 (201)
189 2gj8_A MNME, tRNA modification 70.9 1.2 4E-05 34.4 0.8 43 32-74 54-96 (172)
190 3kjh_A CO dehydrogenase/acetyl 70.5 22 0.00076 28.4 8.7 65 27-106 129-194 (254)
191 2lkc_A Translation initiation 70.4 7.6 0.00026 29.3 5.5 64 31-110 56-122 (178)
192 3e70_C DPA, signal recognition 69.9 13 0.00045 32.2 7.4 94 28-135 210-304 (328)
193 3cbq_A GTP-binding protein REM 69.8 12 0.00043 29.0 6.8 97 31-143 73-179 (195)
194 3def_A T7I23.11 protein; chlor 69.8 4.5 0.00015 33.6 4.3 71 31-109 85-165 (262)
195 3la6_A Tyrosine-protein kinase 69.8 11 0.00036 32.0 6.7 15 29-43 201-215 (286)
196 2fv8_A H6, RHO-related GTP-bin 69.7 6.1 0.00021 31.1 4.9 71 31-111 74-145 (207)
197 3ec1_A YQEH GTPase; atnos1, at 69.5 4 0.00014 36.1 4.1 52 62-121 72-125 (369)
198 3h2y_A GTPase family protein; 69.3 1.2 4.2E-05 39.4 0.7 84 31-125 212-303 (368)
199 2q3h_A RAS homolog gene family 69.1 13 0.00045 28.7 6.8 68 32-109 70-138 (201)
200 3end_A Light-independent proto 68.7 23 0.00078 29.8 8.7 40 27-75 154-193 (307)
201 1m7b_A RND3/RHOE small GTP-bin 68.4 10 0.00036 28.9 6.0 69 31-109 56-125 (184)
202 4fn5_A EF-G 1, elongation fact 68.3 10 0.00036 36.5 7.0 72 33-122 88-163 (709)
203 3ec1_A YQEH GTPase; atnos1, at 68.0 0.99 3.4E-05 40.0 -0.2 83 31-124 213-303 (369)
204 3j25_A Tetracycline resistance 66.5 5.4 0.00018 38.0 4.6 78 30-122 67-145 (638)
205 1hyq_A MIND, cell division inh 66.4 38 0.0013 27.5 9.4 65 28-110 109-177 (263)
206 3h2y_A GTPase family protein; 65.9 11 0.00036 33.3 6.1 42 62-111 70-112 (368)
207 1mh1_A RAC1; GTP-binding, GTPa 65.8 8.6 0.0003 29.1 5.0 69 32-110 55-124 (186)
208 1g3q_A MIND ATPase, cell divis 65.7 33 0.0011 27.2 8.8 73 19-109 101-177 (237)
209 3ihw_A Centg3; RAS, centaurin, 65.5 26 0.0009 26.7 7.9 74 62-143 86-171 (184)
210 1gwn_A RHO-related GTP-binding 65.2 12 0.00042 29.4 5.9 69 31-109 77-146 (205)
211 1n0u_A EF-2, elongation factor 64.8 4.4 0.00015 40.0 3.6 67 29-108 97-163 (842)
212 3of5_A Dethiobiotin synthetase 63.2 58 0.002 26.2 10.5 94 17-123 97-196 (228)
213 2ph1_A Nucleotide-binding prot 61.0 34 0.0012 27.9 8.2 51 16-74 114-165 (262)
214 4dcu_A GTP-binding protein ENG 57.3 2.6 8.9E-05 38.3 0.5 72 29-109 70-145 (456)
215 2iwr_A Centaurin gamma 1; ANK 56.9 57 0.002 24.2 8.9 77 62-143 73-160 (178)
216 1g7s_A Translation initiation 56.6 24 0.00082 33.2 7.0 66 31-109 71-136 (594)
217 2wji_A Ferrous iron transport 56.6 3.2 0.00011 31.4 0.8 70 31-109 51-122 (165)
218 3r7w_B Gtpase2, GTP-binding pr 56.1 17 0.00058 31.6 5.5 47 61-113 72-124 (331)
219 4dkx_A RAS-related protein RAB 55.3 69 0.0024 25.4 8.9 98 32-143 64-167 (216)
220 2hjg_A GTP-binding protein ENG 55.3 3.7 0.00013 37.1 1.1 76 29-110 50-126 (436)
221 1wcv_1 SOJ, segregation protei 52.7 90 0.0031 25.2 9.9 46 18-75 102-147 (257)
222 2qag_A Septin-2, protein NEDD5 52.7 13 0.00045 32.5 4.3 37 97-133 176-214 (361)
223 2g3y_A GTP-binding protein GEM 52.3 22 0.00075 28.3 5.3 44 98-143 148-194 (211)
224 3th5_A RAS-related C3 botulinu 56.5 3.2 0.00011 32.6 0.0 71 30-110 78-149 (204)
225 2xj4_A MIPZ; replication, cell 51.0 66 0.0023 26.6 8.4 38 28-75 102-139 (286)
226 3q9l_A Septum site-determining 50.7 62 0.0021 26.0 8.0 37 29-75 113-149 (260)
227 2yhs_A FTSY, cell division pro 50.5 43 0.0015 30.8 7.4 97 28-135 374-474 (503)
228 3iqw_A Tail-anchored protein t 49.0 23 0.00078 30.7 5.2 37 88-124 211-250 (334)
229 2fcj_A Small toprim domain pro 47.8 40 0.0014 24.5 5.5 79 30-123 25-104 (119)
230 2wkq_A NPH1-1, RAS-related C3 47.3 27 0.00093 29.3 5.4 68 33-110 206-274 (332)
231 1np6_A Molybdopterin-guanine d 47.0 3.9 0.00013 32.0 -0.1 38 4-41 62-112 (174)
232 2px0_A Flagellar biosynthesis 44.8 67 0.0023 27.0 7.4 93 28-134 181-274 (296)
233 2zej_A Dardarin, leucine-rich 44.3 39 0.0013 25.6 5.5 17 97-113 113-130 (184)
234 4f67_A UPF0176 protein LPG2838 43.8 52 0.0018 27.5 6.4 36 193-233 20-55 (265)
235 3k9g_A PF-32 protein; ssgcid, 43.8 68 0.0023 26.0 7.2 47 19-75 134-180 (267)
236 1zo1_I IF2, translation initia 43.2 27 0.00094 32.1 5.0 66 30-109 51-117 (501)
237 3cwq_A Para family chromosome 42.7 1.2E+02 0.0041 23.7 8.8 78 28-123 66-148 (209)
238 1mky_A Probable GTP-binding pr 42.7 27 0.00092 31.3 4.8 70 31-109 50-124 (439)
239 2dy1_A Elongation factor G; tr 41.8 27 0.00091 33.4 4.8 78 30-122 74-151 (665)
240 2qag_B Septin-6, protein NEDD5 41.6 19 0.00067 32.4 3.6 36 98-133 179-216 (427)
241 2woj_A ATPase GET3; tail-ancho 40.0 1.3E+02 0.0044 25.9 8.7 14 29-42 159-172 (354)
242 2cjw_A GTP-binding protein GEM 37.7 64 0.0022 24.7 5.8 43 99-143 118-163 (192)
243 3sop_A Neuronal-specific septi 37.4 22 0.00077 29.6 3.2 27 96-122 141-167 (270)
244 3goc_A Endonuclease V; alpha-b 35.6 35 0.0012 28.1 3.9 27 19-45 97-123 (237)
245 4h62_V Mediator of RNA polymer 34.4 23 0.00079 18.3 1.7 15 269-283 8-22 (31)
246 4a9a_A Ribosome-interacting GT 33.0 35 0.0012 30.1 3.9 68 30-107 119-194 (376)
247 2qnr_A Septin-2, protein NEDD5 32.6 33 0.0011 29.0 3.5 35 98-134 158-196 (301)
248 2w36_A Endonuclease V; hypoxan 32.5 37 0.0013 27.7 3.6 27 19-45 93-119 (225)
249 3izy_P Translation initiation 31.9 22 0.00074 33.1 2.4 63 31-109 53-118 (537)
250 3ga2_A Endonuclease V; alpha-b 31.7 37 0.0013 28.1 3.5 27 19-45 99-125 (246)
251 3l9w_A Glutathione-regulated p 30.4 2.1E+02 0.0071 25.3 8.6 107 6-144 7-113 (413)
252 3vk5_A MOEO5; TIM barrel, tran 30.3 2E+02 0.0069 24.2 7.8 78 37-131 21-101 (286)
253 2qag_C Septin-7; cell cycle, c 28.5 46 0.0016 29.8 3.9 38 96-133 168-207 (418)
254 1cip_A Protein (guanine nucleo 28.1 38 0.0013 29.5 3.2 15 61-75 216-230 (353)
255 1ihu_A Arsenical pump-driving 26.1 1.7E+02 0.0058 27.1 7.5 15 28-42 439-453 (589)
256 4ep4_A Crossover junction endo 25.2 35 0.0012 26.4 2.1 44 3-48 32-83 (166)
257 1byi_A Dethiobiotin synthase; 25.1 51 0.0017 25.9 3.2 14 28-41 107-120 (224)
258 1sjq_A Polypyrimidine tract-bi 24.5 1.8E+02 0.0062 20.2 5.9 23 197-224 25-47 (105)
259 1rj9_A FTSY, signal recognitio 24.3 2.3E+02 0.0077 23.8 7.4 98 29-137 184-285 (304)
260 2afh_E Nitrogenase iron protei 22.2 3E+02 0.01 22.3 7.7 41 28-75 117-157 (289)
261 3p04_A Uncharacterized BCR; SE 21.9 1.9E+02 0.0066 19.6 5.6 48 65-123 6-53 (87)
No 1
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=100.00 E-value=9.4e-41 Score=297.70 Aligned_cols=257 Identities=37% Similarity=0.637 Sum_probs=206.2
Q ss_pred CCCCceeeeeeCchHHHHHHHHHHh-hcC--CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHh
Q 023301 1 MVNNGCLCCTVRGDLVKMLLQLAKK-KQG--QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQH 77 (284)
Q Consensus 1 eL~~GCiCCs~~~dl~~~l~~l~~~-~~~--~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~ 77 (284)
||+||||||+.+.+|..+|..++.. +.. .+|++++|++|+++|.++++.++.++.......++.++++||+.++..+
T Consensus 59 el~~gCicc~~~~~~~~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~ 138 (318)
T 1nij_A 59 TLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQ 138 (318)
T ss_dssp EETTSCEEECTTSCHHHHHHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHH
T ss_pred EECCCceEEcccHHHHHHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHH
Confidence 5789999999999999999988621 133 3599999999999999988877444555667889999999999998877
Q ss_pred hhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhhhcCCCCCcccccccc
Q 023301 78 LNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFVLGVGGYDLERIDSEV 157 (284)
Q Consensus 78 l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l~~~~~~~~~~~~~~~ 157 (284)
+.+. ....+|+..||++++||.|+.+++ +.+.+.++++||.+.|+.++++.++++.+++...++.+......
T Consensus 139 ~~~l------s~g~~Q~~~ad~ill~k~dl~de~--~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~~~~~~~~~~~~~~ 210 (318)
T 1nij_A 139 MNQF------TIAQSQVGYADRILLTKTDVAGEA--EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVST 210 (318)
T ss_dssp HHHC------HHHHHHHHTCSEEEEECTTTCSCT--HHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCTTSCCSCCCSS
T ss_pred Hhhc------hHHHHHHHhCCEEEEECcccCCHH--HHHHHHHHHhCCCCeEEEecccCCCHHHHhCCCCCChhhhhccc
Confidence 6431 345799999999999999999765 78888999999999999999999999999887655432211000
Q ss_pred cccCCcccccCCcCCCCCCCCCCCCCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHHhCCceEEEEEEEEecCCCeeEE
Q 023301 158 HVDNSHCATHHHESAHGHHEGHHHNHMHDSAVSSVTIVSEGTLDLDEVDDWLERLIEEKGEDLYRMKGILSVSGSEQQYV 237 (284)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~l~~~~~~~i~R~KG~v~~~~~~~~~~ 237 (284)
.+ .++ +.+.|++++.|+++..++|+++++|.+||+.++..++++++|+||++|+++.+.++.
T Consensus 211 ~~--------------~~~----~~~~~~~~v~s~~~~~~~~~~~~~l~~~l~~l~~~~~~~v~R~KG~~~~~~~~~~~~ 272 (318)
T 1nij_A 211 KP--------------RFH----FIADKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLL 272 (318)
T ss_dssp CC--------------CSC----STGGGGCSEEEEEEEESSCBCHHHHHHHHHHHHHHTTTTEEEEEEEECBTTCSEEEE
T ss_pred Cc--------------ccc----cccCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeeeEEEeCCCCcEEE
Confidence 00 000 112234589999999999999999999999998777789999999999998888899
Q ss_pred EEccceeeecCCCCCCCCCCCCccEEEEEecCCCHHHHHHHHhhhhC
Q 023301 238 FQGVHSTLDGCPGKAWGPDEKRINKLVFIGRNLDETALRKGFKGCLA 284 (284)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~IG~~ld~~~l~~~l~~c~~ 284 (284)
|||++..++......|. .+++.++|||||+++|+++|++.|++|+.
T Consensus 273 ~~gv~~~~~~~~~~~~~-~~~~~~~lv~Ig~~ld~~~l~~~l~~~l~ 318 (318)
T 1nij_A 273 FQGVQRLYSADWDRPWG-DEKPHSTMVFIGIQLPEEEIRAAFAGLRK 318 (318)
T ss_dssp EEEETTEEEEEEEEECT-TSCCCEEEEEEEESCCHHHHHHHHHTTCC
T ss_pred EECCccEEeccccccCC-CCCCceEEEEEcCCCCHHHHHHHHHHHhC
Confidence 99998887643334575 45678999999999999999999999974
No 2
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.56 E-value=4.8e-08 Score=81.12 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=76.5
Q ss_pred CCCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCC-CCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhh
Q 023301 2 VNNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGL-AKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNE 80 (284)
Q Consensus 2 L~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~-a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~ 80 (284)
+.+||+||.....+...+. . ...+|+++|||+|. ..|... . +.-+.+++|+|+........
T Consensus 86 ~~~~~~~~~~~~~~~~~~~---~--~~~~d~iiidt~G~~~~~~~~--------~----~~~~~~i~vvd~~~~~~~~~- 147 (221)
T 2wsm_A 86 ISTGKECHLDAHMIYHRLK---K--FSDCDLLLIENVGNLICPVDF--------D----LGENYRVVMVSVTEGDDVVE- 147 (221)
T ss_dssp CCCTTCSSCCHHHHHTTGG---G--GTTCSEEEEEEEEBSSGGGGC--------C----CSCSEEEEEEEGGGCTTHHH-
T ss_pred ecCCceeecccHHHHHHHH---h--cCCCCEEEEeCCCCCCCCchh--------c----cccCcEEEEEeCCCcchhhh-
Confidence 5689998754443443343 3 46799999999995 334321 0 12245799999987532221
Q ss_pred cCCccchHHHHHHHhhcCEEEEccCCCCCh--hHHHHHHHHHHHhCCCCceeeeccC-CCChhhhh
Q 023301 81 VKPRFVVNEAVEQVAYADRIILNKIDLVTE--TELGSLTERIKHINAMAPVKLAKYG-SVDMDFVL 143 (284)
Q Consensus 81 ~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~--~~~~~~~~~l~~~np~a~i~~~~~g-~v~~~~l~ 143 (284)
....++..+.+||+||+|+.+. ...+.+.+.++.++|.++++.++.. ......++
T Consensus 148 --------~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~ 205 (221)
T 2wsm_A 148 --------KHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWI 205 (221)
T ss_dssp --------HCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHH
T ss_pred --------hhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHH
Confidence 1235678899999999999654 2577888888888988898877642 33444443
No 3
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.19 E-value=9.8e-07 Score=75.12 Aligned_cols=111 Identities=18% Similarity=0.128 Sum_probs=60.6
Q ss_pred CCceeeeeeC--chHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHH---HhcccccccceeeeceEEEEEcccchHHh
Q 023301 3 NNGCLCCTVR--GDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIE---TFCTDELVSQYVKLDGVITLVDSKHAMQH 77 (284)
Q Consensus 3 ~~GCiCCs~~--~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~---~l~~~~~l~~~~~l~~vv~vvD~~~~~~~ 77 (284)
.|||+||+.. ......+.+.+..-...+|++||+|+|..++..+.. .+. ..+ -. ..+|+|+|+......
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~--~~~---~~-~~iv~vvD~~~~~~~ 153 (262)
T 1yrb_A 80 PNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLM--ENL---PY-PLVVYISDPEILKKP 153 (262)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHH--HTS---SS-CEEEEEECGGGCCSH
T ss_pred CCCcEEecHHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHH--HHH---hh-ceEEeccchhhhcCH
Confidence 4788888631 112233434433112357999999999987754311 111 112 23 678999998764322
Q ss_pred hhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHH
Q 023301 78 LNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTER 119 (284)
Q Consensus 78 l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~ 119 (284)
...............+...+.++|+||+|+.+..+.+.+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~ 195 (262)
T 1yrb_A 154 NDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKY 195 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCeEEEEecccccccccHHHHHHH
Confidence 110000000001234567788999999999887655444443
No 4
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.12 E-value=4.9e-06 Score=74.46 Aligned_cols=110 Identities=20% Similarity=0.194 Sum_probs=69.4
Q ss_pred CCCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhc
Q 023301 2 VNNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEV 81 (284)
Q Consensus 2 L~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~ 81 (284)
++++|.||.......+++ ..+. ...++++||||+|+..+...+- -..+.++.|+|+...... ..
T Consensus 147 ~~~~~~~~~~~~~t~d~i-~~~~--~~~~~~iiiDTpGi~~~~~~~~-----------~~aD~vl~V~d~~~~~~~-~~- 210 (355)
T 3p32_A 147 SPTSGTLGGVTRATRETV-VLLE--AAGFDVILIETVGVGQSEVAVA-----------NMVDTFVLLTLARTGDQL-QG- 210 (355)
T ss_dssp CC--CCHHHHHHHHHHHH-HHHH--HTTCCEEEEEECSCSSHHHHHH-----------TTCSEEEEEEESSTTCTT-TT-
T ss_pred CCCCccccchhHHHHHHH-HHHh--hCCCCEEEEeCCCCCcHHHHHH-----------HhCCEEEEEECCCCCccH-HH-
Confidence 467888888777777777 4555 4689999999999988654321 134668999998653221 11
Q ss_pred CCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHH----HHHHhCC-----CCceeeecc
Q 023301 82 KPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTE----RIKHINA-----MAPVKLAKY 134 (284)
Q Consensus 82 ~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~----~l~~~np-----~a~i~~~~~ 134 (284)
+. ....+.+++||+||+|+.+........+ .++..+| ..+|+.++.
T Consensus 211 ----l~---~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA 265 (355)
T 3p32_A 211 ----IK---KGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSA 265 (355)
T ss_dssp ----CC---TTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBG
T ss_pred ----HH---HhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEc
Confidence 10 1234569999999999976655444333 3333443 356776653
No 5
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.11 E-value=8.3e-06 Score=72.83 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=47.5
Q ss_pred CCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcC
Q 023301 3 NNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVK 82 (284)
Q Consensus 3 ~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~ 82 (284)
+++|.||+...+...++..+ . ...+|++||||+|+..+..-+ . -.++.+++|+|+..... ...
T Consensus 143 ~~~~~lgg~tr~~~~~~~~~-~--~~~~~~iliDT~Gi~~~~~~l---~--------~~~d~vl~V~d~~~~~~-~~~-- 205 (349)
T 2www_A 143 PTRGTLGGVTRTTNEAILLC-E--GAGYDIILIETVGVGQSEFAV---A--------DMVDMFVLLLPPAGGDE-LQG-- 205 (349)
T ss_dssp ---------CTTHHHHHHHH-H--HTTCSEEEEECCCC--CHHHH---H--------TTCSEEEEEECCC----------
T ss_pred CCccccccchHHHHHHHHhh-c--cCCCCEEEEECCCcchhhhhH---H--------hhCCEEEEEEcCCcchh-HHH--
Confidence 46899987777787777633 3 367899999999998765322 1 13567899999976321 110
Q ss_pred CccchHHHHHHHhhcCEEEEccCCCCChhH
Q 023301 83 PRFVVNEAVEQVAYADRIILNKIDLVTETE 112 (284)
Q Consensus 83 ~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~ 112 (284)
+ ....+..++++|+||+|+.+...
T Consensus 206 ---i---~~~il~~~~ivVlNK~Dl~~~~~ 229 (349)
T 2www_A 206 ---I---KRGIIEMADLVAVTKSDGDLIVP 229 (349)
T ss_dssp -----------CCSCSEEEECCCSGGGHHH
T ss_pred ---h---HHHHHhcCCEEEEeeecCCCchh
Confidence 1 01234568999999999976443
No 6
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.10 E-value=2.2e-05 Score=69.76 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=63.7
Q ss_pred CCceeeeeeCchHH-----HHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHh
Q 023301 3 NNGCLCCTVRGDLV-----KMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQH 77 (284)
Q Consensus 3 ~~GCiCCs~~~dl~-----~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~ 77 (284)
.+||+||+..+.+. +.+..+.......++++||||+|+.++...+. -..+.++.|+|+.....
T Consensus 117 ~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~-----------~~aD~vl~Vvd~~~~~~- 184 (341)
T 2p67_A 117 EAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVA-----------RMVDCFISLQIAGGGDD- 184 (341)
T ss_dssp TTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHH-----------TTCSEEEEEECC------
T ss_pred CCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHHHH-----------HhCCEEEEEEeCCccHH-
Confidence 68999997653321 22222221013578999999999998775431 24567899999975422
Q ss_pred hhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHH----HHHHHHHhCC-----CCceeeec
Q 023301 78 LNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGS----LTERIKHINA-----MAPVKLAK 133 (284)
Q Consensus 78 l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~----~~~~l~~~np-----~a~i~~~~ 133 (284)
+. .+. ..+...+.++|+||+|+.+...... +++.++.+++ ..+++.++
T Consensus 185 ~~-----~l~---~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iS 241 (341)
T 2p67_A 185 LQ-----GIK---KGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCS 241 (341)
T ss_dssp -C-----CCC---HHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECB
T ss_pred HH-----HHH---HhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEee
Confidence 11 111 2455778999999999987655443 3333333454 34566554
No 7
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.01 E-value=3.8e-06 Score=69.70 Aligned_cols=118 Identities=25% Similarity=0.305 Sum_probs=73.2
Q ss_pred CCCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCC-CCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhh
Q 023301 2 VNNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGL-AKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNE 80 (284)
Q Consensus 2 L~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~-a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~ 80 (284)
+.+||+||-...++.+.+..+. ...+|++++|++|. ..+.. +. . .-.-++.|+|+........
T Consensus 94 ~~~~~~~~l~~~~~~~~~~~l~---~~~~d~~~id~~g~i~~~~s----~~----~----~~~~~~~v~~~~~~~~~~~- 157 (226)
T 2hf9_A 94 LNTGKECHLDAHLVGHALEDLN---LDEIDLLFIENVGNLICPAD----FD----L----GTHKRIVVISTTEGDDTIE- 157 (226)
T ss_dssp EECTTCSSCCHHHHHHHHTTSC---GGGCSEEEEECCSCSSGGGG----CC----C----SCSEEEEEEEGGGCTTTTT-
T ss_pred ecCCceEeccHHHHHHHHHHHh---cCCCCEEEEeCCCCccCcch----hh----h----ccCcEEEEEecCcchhhHh-
Confidence 3469997755455544444332 24689999999995 33221 11 0 1122467888754322111
Q ss_pred cCCccchHHHHHHHhhcCEEEEccCCCCChh--HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 81 VKPRFVVNEAVEQVAYADRIILNKIDLVTET--ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 81 ~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~--~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
....++..+++||+||+|+.+.. ..+.+.+.++.+++.++++.++. .......++
T Consensus 158 --------~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 215 (226)
T 2hf9_A 158 --------KHPGIMKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVL 215 (226)
T ss_dssp --------TCHHHHTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHH
T ss_pred --------hhhhHhhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHH
Confidence 11456889999999999996542 46778888888888889887764 233444443
No 8
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.87 E-value=3.4e-05 Score=73.04 Aligned_cols=99 Identities=22% Similarity=0.307 Sum_probs=59.0
Q ss_pred CCceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHH--HHHHhc-ccccccceeeeceEEEEEcccchHHhhh
Q 023301 3 NNGCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAP--VIETFC-TDELVSQYVKLDGVITLVDSKHAMQHLN 79 (284)
Q Consensus 3 ~~GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~--i~~~l~-~~~~l~~~~~l~~vv~vvD~~~~~~~l~ 79 (284)
.+||+||++..++.. ..+||+|+|+.++.. +-+.+. ........-..+.+++|+|+.+.... .
T Consensus 140 ~~~~~~~~~~~~ll~-------------~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~-~ 205 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLE-------------SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS-D 205 (550)
T ss_dssp CTTEEEEECCCHHHH-------------HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC-H
T ss_pred cccceEEeccccccC-------------CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC-H
Confidence 489999999887542 358999999997432 111000 00000011256889999999763100 0
Q ss_pred hcCCccchHHHHHHH---hhcCEEEEccCCCCChhHHHHHHHHHH
Q 023301 80 EVKPRFVVNEAVEQV---AYADRIILNKIDLVTETELGSLTERIK 121 (284)
Q Consensus 80 ~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~~~~~~~~~~~~~l~ 121 (284)
+ ...+.+++ ....++|+||+|+++.+++.++.+.++
T Consensus 206 ~------~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 206 E------FSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp H------HHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 0 01123333 456799999999999888877766664
No 9
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.72 E-value=0.00012 Score=64.83 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=60.4
Q ss_pred eeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccch
Q 023301 8 CCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVV 87 (284)
Q Consensus 8 CCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~ 87 (284)
||+++|...+++..+.......+|++||||+|+..+...+. -.++.++.|+|+..... +....
T Consensus 126 ~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~-----------~~~d~vl~v~d~~~~~~-~~~i~----- 188 (337)
T 2qm8_A 126 SGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA-----------DLTDFFLVLMLPGAGDE-LQGIK----- 188 (337)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH-----------TTSSEEEEEECSCC-------CC-----
T ss_pred cccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHH-----------hhCCEEEEEEcCCCccc-HHHHH-----
Confidence 57766655555544421114689999999999999864322 13456788999854221 11110
Q ss_pred HHHHHHHhhcCEEEEccCCCCChhH-----HHHHHHHHHHhCC-----CCceeeec
Q 023301 88 NEAVEQVAYADRIILNKIDLVTETE-----LGSLTERIKHINA-----MAPVKLAK 133 (284)
Q Consensus 88 ~~~~~Qi~~Ad~ivlnK~D~~~~~~-----~~~~~~~l~~~np-----~a~i~~~~ 133 (284)
....+.++++++||+|+.+..+ .+++...+.-++| ..+++.++
T Consensus 189 ---~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~S 241 (337)
T 2qm8_A 189 ---KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTIS 241 (337)
T ss_dssp ---TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEB
T ss_pred ---HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEe
Confidence 1123568999999999765322 2333333333454 35666655
No 10
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.07 E-value=0.0007 Score=59.13 Aligned_cols=108 Identities=13% Similarity=0.217 Sum_probs=64.4
Q ss_pred CCCEEEEecCCCCCcH--HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEc
Q 023301 29 QFDHIVIETTGLAKPA--PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILN 103 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~--~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivln 103 (284)
..+.+|++|+|..++. ..+............-..+.++.|+|+......- + ......++ ...-++|+|
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~-~------~~~~~~~l~~~~~pvilV~N 130 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPR-D------EEIYQNFIKPLNKPVIVVIN 130 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHH-H------HHHHHHHTGGGCCCEEEEEE
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCch-h------HHHHHHHHHhcCCCEEEEEE
Confidence 5578999999998876 2111111100111122578899999998642210 0 01113333 346789999
Q ss_pred cCCCC-ChhHHHHHHHHHHHhC-CCCceeeecc-CCCChhhhh
Q 023301 104 KIDLV-TETELGSLTERIKHIN-AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 104 K~D~~-~~~~~~~~~~~l~~~n-p~a~i~~~~~-g~v~~~~l~ 143 (284)
|+|+. +.+.+....+.+++.. +.++++.++. .......++
T Consensus 131 K~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~ 173 (308)
T 3iev_A 131 KIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELV 173 (308)
T ss_dssp CGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHH
T ss_pred CccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHH
Confidence 99998 6666677777777666 6788887764 233444444
No 11
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.01 E-value=0.0025 Score=52.14 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=59.9
Q ss_pred CCCEEEEecCCCCCc------HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCE
Q 023301 29 QFDHIVIETTGLAKP------APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADR 99 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p------~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ 99 (284)
.....|++|+|+.++ .+-...+.. ..+...-.++.++.|+|+........ ..+..++ ...-+
T Consensus 78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~vi~v~d~~~~~~~~~--------~~~~~~l~~~~~p~i 148 (223)
T 4dhe_A 78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLS-SYLQTRPQLCGMILMMDARRPLTELD--------RRMIEWFAPTGKPIH 148 (223)
T ss_dssp SCSEEEEECCCCCSSCCCSTHHHHHHHHHH-HHHHHCTTEEEEEEEEETTSCCCHHH--------HHHHHHHGGGCCCEE
T ss_pred CCcEEEEcCCCCCcccCChhhHHHHHHHHH-HHHhcCcCcCEEEEEEeCCCCCCHHH--------HHHHHHHHhcCCCEE
Confidence 367889999998876 222222211 12222233677999999976321111 1122333 34568
Q ss_pred EEEccCCCCChhHHH----HHHHHHHHh-----CCCCceeeecc-CCCChhhhh
Q 023301 100 IILNKIDLVTETELG----SLTERIKHI-----NAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 100 ivlnK~D~~~~~~~~----~~~~~l~~~-----np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+||+|+.+..+.. .+.+.++.. ....+++.++. .......++
T Consensus 149 ~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 202 (223)
T 4dhe_A 149 SLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAH 202 (223)
T ss_dssp EEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHH
T ss_pred EEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHH
Confidence 899999998876643 334445544 45677877653 233444444
No 12
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.87 E-value=0.0012 Score=57.58 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=56.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-----hcCEEEEc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-----YADRIILN 103 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-----~Ad~ivln 103 (284)
....+|++|+|+.+|...+............-..+.++.|+|+.+...... ..+.+++. ..-++|+|
T Consensus 54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--------~~i~~~l~~~~~~~p~ilV~N 125 (301)
T 1wf3_A 54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--------ELVARALKPLVGKVPILLVGN 125 (301)
T ss_dssp TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--------HHHHHHHGGGTTTSCEEEEEE
T ss_pred CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--------HHHHHHHHhhcCCCCEEEEEE
Confidence 346789999999998654443221111112236788999999976322110 12234443 44688999
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 104 KIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
|+|+.+.+.. +.+.++.+.+.++++.++
T Consensus 126 K~Dl~~~~~~--~~~~~~~~~~~~~~~~iS 153 (301)
T 1wf3_A 126 KLDAAKYPEE--AMKAYHELLPEAEPRMLS 153 (301)
T ss_dssp CGGGCSSHHH--HHHHHHHTSTTSEEEECC
T ss_pred CcccCCchHH--HHHHHHHhcCcCcEEEEe
Confidence 9999875440 344455555556666665
No 13
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.66 E-value=0.0051 Score=48.97 Aligned_cols=97 Identities=13% Similarity=0.187 Sum_probs=56.3
Q ss_pred CEEEEecCCCCCc------HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 31 DHIVIETTGLAKP------APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p------~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
...+++++|+.++ .+-...+.. ..+...-.++.++.|+|+......... .+ .....+....-++|+||
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~v~d~~~~~~~~~~----~~-~~~~~~~~~p~i~v~nK 143 (195)
T 1svi_A 70 ELHFVDVPGYGFAKVSKSEREAWGRMIE-TYITTREELKAVVQIVDLRHAPSNDDV----QM-YEFLKYYGIPVIVIATK 143 (195)
T ss_dssp TEEEEECCCBCCCSSCHHHHHHHHHHHH-HHHHHCTTEEEEEEEEETTSCCCHHHH----HH-HHHHHHTTCCEEEEEEC
T ss_pred cEEEEECCCCCccccCHHHHHHHHHHHH-HHHhhhhcCCEEEEEEECCCCCCHHHH----HH-HHHHHHcCCCEEEEEEC
Confidence 5789999998875 332332221 122222345789999998763221110 00 01123344567899999
Q ss_pred CCCCChhHHHHHHHHHHH-hC--CCCceeeec
Q 023301 105 IDLVTETELGSLTERIKH-IN--AMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~~~~~~~~l~~-~n--p~a~i~~~~ 133 (284)
+|+.+..++....+.+++ +. +..+++.++
T Consensus 144 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 144 ADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp GGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred cccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 999988777665555554 42 356676665
No 14
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.57 E-value=0.0039 Score=49.51 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=56.6
Q ss_pred CCEEEEecCCCCCc------HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEc
Q 023301 30 FDHIVIETTGLAKP------APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p------~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivln 103 (284)
....+++++|+... ......+.. ..+...-.++.++.|+|+......... .+ ..........-++|+|
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~vi~v~d~~~~~~~~~~----~~-~~~~~~~~~p~i~v~n 141 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVE-DYFKNRWSLQMVFLLVDGRIPPQDSDL----MM-VEWMKSLNIPFTIVLT 141 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHH-HHHHHCTTEEEEEEEEETTSCCCHHHH----HH-HHHHHHTTCCEEEEEE
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHH-HHHhcCcCceEEEEEecCCCCCCHHHH----HH-HHHHHHcCCCEEEEEE
Confidence 35789999997653 222222221 122223345789999998653211100 00 1123344567789999
Q ss_pred cCCCCChhHHHHHHHHHHHhCC---CCceeeec
Q 023301 104 KIDLVTETELGSLTERIKHINA---MAPVKLAK 133 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~np---~a~i~~~~ 133 (284)
|+|+.++++++...+.++.... ..+++.++
T Consensus 142 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 174 (195)
T 3pqc_A 142 KMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTS 174 (195)
T ss_dssp CGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECC
T ss_pred ChhcCChHHHHHHHHHHHHHHhhcCCCceEEEe
Confidence 9999987777766666665432 35677665
No 15
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.00 E-value=0.019 Score=49.79 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCEEEEecCCCC-CcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccC
Q 023301 30 FDHIVIETTGLA-KPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKI 105 (284)
Q Consensus 30 ~d~iiIE~sG~a-~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~ 105 (284)
...++++|+|.. .+...+............-..+.++.|+|+..+... + ..+.+++ ...-++++||+
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~-----~----~~i~~~l~~~~~P~ilvlNK~ 126 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD-----D----EMVLNKLREGKAPVILAVNKV 126 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHH-----H----HHHHHHHHSSSSCEEEEEEST
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHH-----H----HHHHHHHHhcCCCEEEEEECc
Confidence 357889999998 565444322221122223367788999999763221 1 1223344 46779999999
Q ss_pred CCCC-hhHHHHHHHHHHHhCCCCceeeec
Q 023301 106 DLVT-ETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 106 D~~~-~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
|+.+ .+.+....+.+.+..+...++.++
T Consensus 127 D~~~~~~~~~~~l~~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 127 DNVQEKADLLPHLQFLASQMNFLDIVPIS 155 (301)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred ccCccHHHHHHHHHHHHHhcCcCceEEEE
Confidence 9987 444434434344333334565554
No 16
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.10 E-value=0.17 Score=46.26 Aligned_cols=94 Identities=24% Similarity=0.330 Sum_probs=53.4
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
..+|+|||+|.|..... .+...+. .+.....-+.++.|+|+..-..... ... ...+....+.||+||.|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~---~i~~~~~pd~vlLVvDA~~gq~a~~------~a~-~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMK---QISNVIHPHEVILVIDGTIGQQAYN------QAL-AFKEATPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGHHH------HHH-HHHHSCTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHH---HHHHhhcCceEEEEEeCCCchhHHH------HHH-HHHhhCCCeEEEEECCC
Confidence 57999999999977633 3444332 1222334567999999987432211 111 12223345679999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
..... ..+...+.. ...||.....|
T Consensus 251 ~~~~g--G~~ls~~~~--~g~PI~fig~G 275 (443)
T 3dm5_A 251 GSAKG--GGALSAVAA--TGAPIKFIGTG 275 (443)
T ss_dssp SCSSH--HHHHHHHHT--TCCCEEEEECS
T ss_pred Ccccc--cHHHHHHHH--HCCCEEEEEcC
Confidence 86532 223333332 34677655544
No 17
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=94.39 E-value=0.066 Score=49.51 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=50.4
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhc--CCccch-HHHHHHHhhc-CEEEEcc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEV--KPRFVV-NEAVEQVAYA-DRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~--~~~~~~-~~~~~Qi~~A-d~ivlnK 104 (284)
...+.|++|+|..+........ .-..+.+|.|+|+..-... ... .+.... ......+... =+||+||
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~--------~~~aD~~llVvDa~~g~~~-~~~~~~~qt~e~~~~~~~~~~~~iIvviNK 180 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMG--------ISQADMAILCVDCSTNAFE-SGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHH--------HTTCSEEEEEEECCC-------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CceEEEEECCCcHHHHHHHHHh--------hhhCCEEEEEEECCCCccc-cccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence 3567899999997654322221 1246789999999873210 000 000000 0112333333 3567899
Q ss_pred CCCCC--hhHHHHHHHHHHHh----C--C-CCceeeec
Q 023301 105 IDLVT--ETELGSLTERIKHI----N--A-MAPVKLAK 133 (284)
Q Consensus 105 ~D~~~--~~~~~~~~~~l~~~----n--p-~a~i~~~~ 133 (284)
+|+.+ ++..+.+.+.++.+ . + .++++.++
T Consensus 181 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iS 218 (483)
T 3p26_A 181 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPIS 218 (483)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECC
T ss_pred cCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEe
Confidence 99986 44455555555443 2 1 45667654
No 18
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.19 E-value=0.16 Score=45.70 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=56.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchHHHHHHHhh-cCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVNEAVEQVAY-ADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~~~~~Qi~~-Ad~ivlnK~D 106 (284)
..+.|++++|-.+....... ..-..+.++.|+|+.... .+..+ . -....++.. .=++++||+|
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~--------~~~~~D~~ilVvda~~~~~~~qt~~----~--~~~~~~~~~~~iivviNK~D 140 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLS--------GAALMDGAILVVAANEPFPQPQTRE----H--FVALGIIGVKNLIIVQNKVD 140 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHH--------HHTTCSEEEEEEETTSCSSCHHHHH----H--HHHHHHHTCCCEEEEEECGG
T ss_pred ceEEEEECCCcHHHHHHHHH--------HHhhCCEEEEEEECCCCCCcHHHHH----H--HHHHHHcCCCCEEEEEECcc
Confidence 45789999996554332211 122467899999998742 11111 0 012333443 2367889999
Q ss_pred CCChhHHHHHHHHHHHh----C-CCCceeeecc-CCCChhhhh
Q 023301 107 LVTETELGSLTERIKHI----N-AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~----n-p~a~i~~~~~-g~v~~~~l~ 143 (284)
+++.++.....+.+++. + ..++++.++. .......|+
T Consensus 141 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~ 183 (403)
T 3sjy_A 141 VVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLI 183 (403)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHH
Confidence 99887665555555443 2 2567887653 233444444
No 19
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.15 E-value=0.073 Score=42.87 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=47.2
Q ss_pred CCCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH-HH---hhcCEEEEc
Q 023301 29 QFDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE-QV---AYADRIILN 103 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~-Qi---~~Ad~ivln 103 (284)
.....+++++|...... +...+ .-..+.+|.|+|+.++...+.... ......+.. +. ...=+||.|
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRF--------KSSARAVVFVVDSAAFQREVKDVA-EFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHH--------GGGEEEEEEEEETTTHHHHHHHHH-HHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred ccEEEEEECCCChhHHHHHHHHH--------HhhCCEEEEEEECCCcCHHHHHHH-HHHHHHHhhhhhcccCCCEEEEEE
Confidence 34578889999865444 33221 124567999999988644322210 001111111 11 123478889
Q ss_pred cCCCCChhHHHHHHHHHHH
Q 023301 104 KIDLVTETELGSLTERIKH 122 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~ 122 (284)
|+|+.+....+.+.+.+++
T Consensus 124 K~Dl~~~~~~~~~~~~l~~ 142 (214)
T 2fh5_B 124 KQDIAMAKSAKLIQQQLEK 142 (214)
T ss_dssp CTTSTTCCCHHHHHHHHHH
T ss_pred CCCCCCcccHHHHHHHHHH
Confidence 9999876555555555554
No 20
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.06 E-value=0.01 Score=50.70 Aligned_cols=75 Identities=16% Similarity=0.246 Sum_probs=42.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccc-e---eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQ-Y---VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~-~---~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
.....+++++|..+...+...-..+..+.. . -..+.+|.|+|+.++...+. . ..........-++|+||
T Consensus 49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~------~-~~~l~~~~~p~ivv~NK 121 (274)
T 3i8s_A 49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY------L-TLQLLELGIPCIVALNM 121 (274)
T ss_dssp SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH------H-HHHHHHHTCCEEEEEEC
T ss_pred CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHH------H-HHHHHhcCCCEEEEEEC
Confidence 446789999999886532110000000100 1 15678999999998654321 0 01123345567899999
Q ss_pred CCCCCh
Q 023301 105 IDLVTE 110 (284)
Q Consensus 105 ~D~~~~ 110 (284)
+|+.+.
T Consensus 122 ~Dl~~~ 127 (274)
T 3i8s_A 122 LDIAEK 127 (274)
T ss_dssp HHHHHH
T ss_pred ccchhh
Confidence 998654
No 21
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.66 E-value=0.12 Score=40.84 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=54.6
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH--H--------hhcC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ--V--------AYAD 98 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q--i--------~~Ad 98 (284)
.....|++++|......+.... + -..+.+|.|+|+...... .+.. .++ ..+... + ...-
T Consensus 62 ~~~~~i~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~D~~~~~s~-~~~~-~~~-~~~~~~~~~~~~~~~~~~~pi 130 (199)
T 4bas_A 62 RVAFTVFDMGGAKKFRGLWETY-----Y---DNIDAVIFVVDSSDHLRL-CVVK-SEI-QAMLKHEDIRRELPGGGRVPF 130 (199)
T ss_dssp TEEEEEEEECCSGGGGGGGGGG-----C---TTCSEEEEEEETTCGGGH-HHHH-HHH-HHHHTSHHHHSBCTTSCBCCE
T ss_pred CEEEEEEECCCCHhHHHHHHHH-----H---hcCCEEEEEEECCcHHHH-HHHH-HHH-HHHHhChhhhhcccccCCCCE
Confidence 3456789999986554332221 1 246789999999875321 1110 011 111111 1 3456
Q ss_pred EEEEccCCCCChhHHHHHHHHHHH--h--CCCCceeeecc-CCCChhhhh
Q 023301 99 RIILNKIDLVTETELGSLTERIKH--I--NAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 99 ~ivlnK~D~~~~~~~~~~~~~l~~--~--np~a~i~~~~~-g~v~~~~l~ 143 (284)
+||+||+|+.+....+++.+.+.. + ....++++++. .......++
T Consensus 131 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 180 (199)
T 4bas_A 131 LFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGF 180 (199)
T ss_dssp EEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHH
T ss_pred EEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHH
Confidence 788899999877444444444331 1 13456666653 233444443
No 22
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=93.26 E-value=0.11 Score=47.87 Aligned_cols=108 Identities=15% Similarity=0.033 Sum_probs=47.6
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~ 107 (284)
.....|++|+|..++....+.+.....+...-..+.++.|+|+....... +. ... ..+..++. ..-++|+||+|+
T Consensus 280 g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~-~~--~~~-~~~l~~l~~~piIvV~NK~Dl 355 (476)
T 3gee_A 280 KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDD-EL--TEI-RELKAAHPAAKFLTVANKLDR 355 (476)
T ss_dssp TEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGG-GH--HHH-HHHHHHCTTSEEEEEEECTTS
T ss_pred CeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchh-hh--HHH-HHHHHhcCCCCEEEEEECcCC
Confidence 34678999999988776555431111122234678899999998743210 00 000 11233333 456788899999
Q ss_pred CChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+...... +.+.+.+ ..+++.++. .....+.++
T Consensus 356 ~~~~~~~~--~~l~~~~-~~~~i~vSAktg~GI~eL~ 389 (476)
T 3gee_A 356 AANADALI--RAIADGT-GTEVIGISALNGDGIDTLK 389 (476)
T ss_dssp CTTTHHHH--HHHHHHH-TSCEEECBTTTTBSHHHHH
T ss_pred CCccchhH--HHHHhcC-CCceEEEEECCCCCHHHHH
Confidence 87665432 2333331 145666553 233444444
No 23
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.14 E-value=0.22 Score=38.27 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=48.1
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh------cCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY------ADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~------Ad~ivlnK 104 (284)
...+++++|......+..... -..+.++.|+|+.+.... .+. ..+..++.. .=+||+||
T Consensus 65 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~piilv~nK 129 (179)
T 1z0f_A 65 KLQIWDTAGQERFRAVTRSYY--------RGAAGALMVYDITRRSTY-NHL------SSWLTDARNLTNPNTVIILIGNK 129 (179)
T ss_dssp EEEEEECTTGGGTCHHHHHHH--------HTCSEEEEEEETTCHHHH-HTH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEECCCChHhhhhHHHHh--------ccCCEEEEEEeCcCHHHH-HHH------HHHHHHHHHhcCCCCcEEEEEEC
Confidence 457789999665444333221 135779999999875432 211 112222222 23788899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+.+..+ .+.++++.+..+ .+++.++
T Consensus 130 ~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S 158 (179)
T 1z0f_A 130 ADLEAQRDVTYEEAKQFAEENG--LLFLEAS 158 (179)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTT--CEEEECC
T ss_pred cccccccccCHHHHHHHHHHcC--CEEEEEe
Confidence 99964322 345555555443 5666654
No 24
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.07 E-value=0.12 Score=39.48 Aligned_cols=96 Identities=13% Similarity=0.054 Sum_probs=52.6
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh--------hcCEEEE
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA--------YADRIIL 102 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~--------~Ad~ivl 102 (284)
...+++++|......+..... -..+.++.|+|+.+.... .+. .....++. ..=+||+
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~-~~~------~~~~~~i~~~~~~~~~~pii~v~ 116 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSI--------SKGHAFILVYSITSRQSL-EEL------KPIYEQICEIKGDVESIPIMLVG 116 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHH--------HHCSEEEEEEETTCHHHH-HTT------HHHHHHHHHHHC---CCCEEEEE
T ss_pred EEEEEECCCchhhHHHHHHhc--------ccCCEEEEEEECcCHHHH-HHH------HHHHHHHHHHhCCCCCCCEEEEE
Confidence 467899999887766544321 125678999999874432 211 11122222 2347888
Q ss_pred ccCCCCChhHH--HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 103 NKIDLVTETEL--GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 103 nK~D~~~~~~~--~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
||+|+.+..++ ....+..+..+ .+++.++. .......++
T Consensus 117 nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 158 (172)
T 2erx_A 117 NKCDESPSREVQSSEAEALARTWK--CAFMETSAKLNHNVKELF 158 (172)
T ss_dssp ECGGGGGGCCSCHHHHHHHHHHHT--CEEEECBTTTTBSHHHHH
T ss_pred EccccccccccCHHHHHHHHHHhC--CeEEEecCCCCcCHHHHH
Confidence 99998654332 23334444333 56666553 233444444
No 25
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=93.02 E-value=0.17 Score=46.86 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=52.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH-HhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM-QHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~-~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
..+.|++++|..+.. ... ....-..+.++.|+|+..-. .+..+ .+ .+..++...-+|++||+|+.
T Consensus 73 ~~i~iiDtPGh~~~~---~~~-----~~~~~~aD~~ilVvda~~g~~~qt~e----~l--~~~~~~~ip~IvviNK~Dl~ 138 (482)
T 1wb1_A 73 YRITLVDAPGHADLI---RAV-----VSAADIIDLALIVVDAKEGPKTQTGE----HM--LILDHFNIPIIVVITKSDNA 138 (482)
T ss_dssp EEEEECCCSSHHHHH---HHH-----HHHTTSCCEEEEEEETTTCSCHHHHH----HH--HHHHHTTCCBCEEEECTTSS
T ss_pred EEEEEEECCChHHHH---HHH-----HHHHhhCCEEEEEEecCCCccHHHHH----HH--HHHHHcCCCEEEEEECCCcc
Confidence 356888999964422 111 11123467899999997621 11010 01 12344555669999999999
Q ss_pred ChhHHHHHHHHHHHh------CCCCceeeecc
Q 023301 109 TETELGSLTERIKHI------NAMAPVKLAKY 134 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~------np~a~i~~~~~ 134 (284)
+++.++.+.+.++++ .+..+++.++.
T Consensus 139 ~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 139 GTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred cchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 876666555544442 12467776653
No 26
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.80 E-value=0.42 Score=35.96 Aligned_cols=101 Identities=10% Similarity=0.135 Sum_probs=53.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D 106 (284)
.+..+++++|......+..... -..+.++.|+|+...... .+.. .+ ...+.... ...=++|+||+|
T Consensus 51 ~~~~~~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~~~-~~~~-~~-~~~i~~~~~~~~~p~iiv~nK~D 119 (166)
T 2ce2_X 51 CLLDILDTAGQEEYSAMRDQYM--------RTGEGFLCVFAINNTKSF-EDIH-QY-REQIKRVKDSDDVPMVLVGNKSD 119 (166)
T ss_dssp EEEEEEECCCCSSCCHHHHHHH--------HHCSEEEEEEETTCHHHH-HHHH-HH-HHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEECCCchhhhHHHHHhh--------ccCCEEEEEEECCCHHHH-HHHH-HH-HHHHHHhcCCCCCcEEEEEEchh
Confidence 3457899999887666544322 135678999998765432 1110 00 01111111 233488899999
Q ss_pred CCChh-HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 107 LVTET-ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~-~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+.+ ..+.+.+..+..+ .+++.++. .......++
T Consensus 120 l~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 156 (166)
T 2ce2_X 120 LAARTVESRQAQDLARSYG--IPYIETSAKTRQGVEDAF 156 (166)
T ss_dssp CSCCCSCHHHHHHHHHHHT--CCEEEECTTTCTTHHHHH
T ss_pred hhhcccCHHHHHHHHHHcC--CeEEEecCCCCCCHHHHH
Confidence 87532 2344445555444 46776653 233344443
No 27
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.79 E-value=0.019 Score=50.72 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=50.3
Q ss_pred CCEEEEecCCCCCcHH----HHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchHHHHHHHh--------
Q 023301 30 FDHIVIETTGLAKPAP----VIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVNEAVEQVA-------- 95 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~----i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~~~~~Qi~-------- 95 (284)
...+|++++|+.+... +... .++..-..+.+|.|+|+..+. ..+.+. ..+..++.
T Consensus 206 ~~~~l~DtPG~i~~a~~~~~l~~~-----fl~~i~~~d~ll~VvD~s~~~~~~~~~~~------~~~~~eL~~~~~~l~~ 274 (342)
T 1lnz_A 206 RSFVMADLPGLIEGAHQGVGLGHQ-----FLRHIERTRVIVHVIDMSGLEGRDPYDDY------LTINQELSEYNLRLTE 274 (342)
T ss_dssp CEEEEEEHHHHHHHTTCTTTTHHH-----HHHHHHHCCEEEEEEESSCSSCCCHHHHH------HHHHHHHHHSCSSTTT
T ss_pred ceEEEecCCCCcccccccchhHHH-----HHHHHHhccEEEEEEECCcccccChHHHH------HHHHHHHHHhhhhhcC
Confidence 4577888888633111 1111 122223467899999996531 111110 11223333
Q ss_pred hcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 96 YADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 96 ~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
..-+||+||+|+.+..+ .+.+..+.++...+++.+|. ....++.++
T Consensus 275 ~p~ilV~NK~Dl~~~~e--~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~ 321 (342)
T 1lnz_A 275 RPQIIVANKMDMPEAAE--NLEAFKEKLTDDYPVFPISAVTREGLRELL 321 (342)
T ss_dssp SCBCBEEECTTSTTHHH--HHHHHHHHCCSCCCBCCCSSCCSSTTHHHH
T ss_pred CCEEEEEECccCCCCHH--HHHHHHHHhhcCCCEEEEECCCCcCHHHHH
Confidence 34589999999986532 33333444443355665543 233344443
No 28
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.64 E-value=0.39 Score=36.25 Aligned_cols=90 Identities=12% Similarity=0.150 Sum_probs=48.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~ 107 (284)
...+++++|......+..... -..+.++.|+|+...... .... .++ ..+.... ...=++|+||+|+
T Consensus 53 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~i~~~~~~~~~piilv~nK~Dl 121 (168)
T 1u8z_A 53 QIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESF-AATA-DFR-EQILRVKEDENVPFLLVGNKSDL 121 (168)
T ss_dssp EEEEEECCC---CHHHHHHHH--------HHCSEEEEEEETTCHHHH-HHHH-HHH-HHHHHHHCCTTSCEEEEEECGGG
T ss_pred EEEEEECCCcchhHHHHHHHh--------hcCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHhcCCCCCcEEEEEECccc
Confidence 567889999877666544322 135678999999875432 1110 011 1122222 2234788999998
Q ss_pred CChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 108 VTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
.+..+ .+.+++..+..+ .+++.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~--~~~~~~S 147 (168)
T 1u8z_A 122 EDKRQVSVEEAKNRADQWN--VNYVETS 147 (168)
T ss_dssp GGGCCSCHHHHHHHHHHHT--CEEEECC
T ss_pred cccCccCHHHHHHHHHHcC--CeEEEeC
Confidence 65322 345555565554 4666654
No 29
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.63 E-value=0.37 Score=37.75 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=50.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH-----HhhcCEEEEcc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ-----VAYADRIILNK 104 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q-----i~~Ad~ivlnK 104 (284)
....+++++|......+... .+ -..+.++.|+|+.+.... .+.. .++ ..+... -...=+||+||
T Consensus 67 ~~~~l~Dt~G~~~~~~~~~~-----~~---~~~d~ii~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~~~~piilv~nK 135 (190)
T 2h57_A 67 LSFTVFDMSGQGRYRNLWEH-----YY---KEGQAIIFVIDSSDRLRM-VVAK-EEL-DTLLNHPDIKHRRIPILFFANK 135 (190)
T ss_dssp CEEEEEEECCSTTTGGGGGG-----GG---GGCSEEEEEEETTCHHHH-HHHH-HHH-HHHHHSTTTTTSCCCEEEEEEC
T ss_pred EEEEEEECCCCHHHHHHHHH-----HH---hcCCEEEEEEECCCHHHH-HHHH-HHH-HHHHhChhhccCCCeEEEEEeC
Confidence 46788999997765443221 11 245789999999874321 1110 011 111111 12234788899
Q ss_pred CCCCChhHHHHHHHHHH--HhC-CCCceeeec
Q 023301 105 IDLVTETELGSLTERIK--HIN-AMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~~~~~~~~l~--~~n-p~a~i~~~~ 133 (284)
+|+.+....+.+.+.++ .+. ...+++.++
T Consensus 136 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 136 MDLRDAVTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp TTSTTCCCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred cCcccCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 99977555556666553 222 234555554
No 30
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.62 E-value=0.54 Score=37.14 Aligned_cols=100 Identities=13% Similarity=0.164 Sum_probs=56.1
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~ 107 (284)
...|++++|......+..... -..+.++.|+|+.+.... ... ..++ ..+.... ...=+||+||+|+
T Consensus 63 ~~~l~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~-~~~-~~~~-~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 63 QIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESF-AAT-ADFR-EQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp EEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHH-HHH-HHHH-HHHHHHTTCSCCCEEEEEECTTC
T ss_pred EEEEEcCCChhhhHHHHHHHH--------hhCCEEEEEEECCCHHHH-HHH-HHHH-HHHHHhcCCCCCCEEEEEeccCc
Confidence 567889999887766554322 135678999999875432 111 0010 1111211 1233788999999
Q ss_pred CChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+..+ .+.+.++.+..+ .+++.++. .......++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 132 EDKRQVSVEEAKNRAEQWN--VNYVETSAKTRANVDKVF 168 (206)
T ss_dssp GGGCCSCHHHHHHHHHHHT--CEEEEECTTTCTTHHHHH
T ss_pred cccccccHHHHHHHHHHhC--CeEEEEeCCCCCCHHHHH
Confidence 65322 455666666554 46776653 233455544
No 31
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=92.53 E-value=0.054 Score=49.89 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=45.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~ 107 (284)
.....+++|+|+.++....+.+.........-..+.++.|+|+........ ..+..++. ..-++|+||+|+
T Consensus 271 g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~--------~~i~~~l~~~piivV~NK~Dl 342 (462)
T 3geh_A 271 GIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD--------QEIYEQVKHRPLILVMNKIDL 342 (462)
T ss_dssp TEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH--------HHHHHHHTTSCEEEEEECTTS
T ss_pred CEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH--------HHHHHhccCCcEEEEEECCCC
Confidence 446789999999887665554321112222335688999999986322111 12233433 356788899999
Q ss_pred CChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+..... .++.+....+++.++. ....++.++
T Consensus 343 ~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~ 375 (462)
T 3geh_A 343 VEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLE 375 (462)
T ss_dssp SCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHH
T ss_pred CcchhhH----HHHHhccCCcEEEEECCCCCCHHHHH
Confidence 8765433 1222223455665543 233344443
No 32
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.51 E-value=0.17 Score=40.17 Aligned_cols=101 Identities=12% Similarity=0.117 Sum_probs=51.0
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivlnK 104 (284)
...|++++|...... +.. ..+ -..+.+|.|+|+...... .+. ..++ ..+.... ...=+||+||
T Consensus 58 ~~~l~Dt~G~~~~~~----~~~-~~~---~~~d~~i~v~d~~~~~s~-~~~-~~~~-~~~~~~~~~~~~~~~piilv~nK 126 (207)
T 1vg8_A 58 TMQIWDTAGQERFQS----LGV-AFY---RGADCCVLVFDVTAPNTF-KTL-DSWR-DEFLIQASPRDPENFPFVVLGNK 126 (207)
T ss_dssp EEEEEEECSSGGGSC----SCC-GGG---TTCSEEEEEEETTCHHHH-HTH-HHHH-HHHHHHHCCSSGGGSCEEEEEEC
T ss_pred EEEEEeCCCcHHHHH----hHH-HHH---hCCcEEEEEEECCCHHHH-HHH-HHHH-HHHHHhcccccCCCCcEEEEEEC
Confidence 567889999543322 111 111 246789999999875432 111 0011 1112221 2234788899
Q ss_pred CCCCChh-HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTET-ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~-~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+.. ..+.+.++.+ .....+++.++. .......++
T Consensus 127 ~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~g~gi~~l~ 166 (207)
T 1vg8_A 127 IDLENRQVATKRAQAWCY-SKNNIPYFETSAKEAINVEQAF 166 (207)
T ss_dssp TTSSCCCSCHHHHHHHHH-HTTSCCEEECBTTTTBSHHHHH
T ss_pred CCCcccccCHHHHHHHHH-hcCCceEEEEeCCCCCCHHHHH
Confidence 9997432 2233444333 244567777653 233444444
No 33
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.49 E-value=0.27 Score=45.71 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=43.8
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
..+|+|||+|+|..... .+...+.. ....+..+.++.|||+..-...+. ....+.+. ...+.||+||+|
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~---~~~~i~pd~vllVvDa~~g~~~~~------~a~~~~~~-~~i~gvVlNK~D 251 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQ---VANAIQPDNIVYVMDASIGQACEA------QAKAFKDK-VDVASVIVTKLD 251 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHH---HHHHHCCSEEEEEEETTCCTTHHH------HHHHHHHH-HCCCCEEEECTT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHH---HHhhhcCceEEEEEeccccccHHH------HHHHHHhh-cCceEEEEeCCc
Confidence 57899999999998753 33333321 111235677899999987432111 11111221 223789999999
Q ss_pred CCCh
Q 023301 107 LVTE 110 (284)
Q Consensus 107 ~~~~ 110 (284)
....
T Consensus 252 ~~~~ 255 (504)
T 2j37_W 252 GHAK 255 (504)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8653
No 34
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.47 E-value=0.4 Score=37.05 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=54.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~ 107 (284)
...|++++|......+..... -..+.++.|+|+...... .... .+ ...+.... ...=+||+||+|+
T Consensus 67 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~-~~-~~~i~~~~~~~~~piilv~nK~Dl 135 (187)
T 2a9k_A 67 QIDILDTAGQEDYAAIRDNYF--------RSGEGFLCVFSITEMESF-AATA-DF-REQILRVKEDENVPFLLVGNKSDL 135 (187)
T ss_dssp EEEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHH-HHHH-HH-HHHHHHHHCCTTCCEEEEEECGGG
T ss_pred EEEEEECCCCcccHHHHHHHh--------ccCCEEEEEEECcCHHHH-HHHH-HH-HHHHHHhcCCCCCCEEEEEECccc
Confidence 567899999887766554322 135678999999875432 1110 01 11122222 1233788899998
Q ss_pred CChh--HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTET--ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~--~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+.. ..+.++++.+..+ .+++.++. .......++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 136 EDKRQVSVEEAKNRAEQWN--VNYVETSAKTRANVDKVF 172 (187)
T ss_dssp GGGCCSCHHHHHHHHHHTT--CEEEECCTTTCTTHHHHH
T ss_pred cccCccCHHHHHHHHHHcC--CeEEEeCCCCCCCHHHHH
Confidence 6532 2345555555544 46666553 233444443
No 35
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.46 E-value=0.62 Score=36.17 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=49.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-------hhcCEEEE
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-------AYADRIIL 102 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-------~~Ad~ivl 102 (284)
....+++++|......+..... -..+.+|.|+|+.+.... .+. .....++ ...-+||+
T Consensus 70 ~~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~~piilv~ 134 (195)
T 3bc1_A 70 IHLQLWDTAGLERFRSLTTAFF--------RDAMGFLLLFDLTNEQSF-LNV------RNWISQLQMHAYSENPDIVLCG 134 (195)
T ss_dssp EEEEEEEECCSGGGHHHHHHTT--------TTCSEEEEEEETTCHHHH-HTH------HHHHHHHHHHSSSSSCCEEEEE
T ss_pred EEEEEEeCCCcHHHHHHHHHHH--------cCCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCCCEEEEE
Confidence 3567889999876655443321 145789999999875432 111 1122222 22347888
Q ss_pred ccCCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 103 NKIDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 103 nK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
||+|+.+..+ .+.+++..+..+ .+++.++
T Consensus 135 nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S 165 (195)
T 3bc1_A 135 NKSDLEDQRAVKEEEARELAEKYG--IPYFETS 165 (195)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHHT--CCEEECC
T ss_pred ECcccccccccCHHHHHHHHHHcC--CCEEEEE
Confidence 9999965322 344555555544 4666665
No 36
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=92.42 E-value=0.25 Score=44.91 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=52.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH-HhhhhcCCccchH-HHHHHHhhcC-EEEEccC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM-QHLNEVKPRFVVN-EAVEQVAYAD-RIILNKI 105 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~-~~l~~~~~~~~~~-~~~~Qi~~Ad-~ivlnK~ 105 (284)
...+.|++|+|..+....... ..-..+.+|.|+|+..-. +......+..... ....++.... +|++||+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~--------~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~ 154 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMIT--------GASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKM 154 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHH--------TSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred CeEEEEEECCCcHHHHHHHHh--------hhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 467899999999886543221 123568899999998621 0000000000000 1123444443 5779999
Q ss_pred CCCC----hhHH----HHHHHHHHHhC--C-CCceeeec
Q 023301 106 DLVT----ETEL----GSLTERIKHIN--A-MAPVKLAK 133 (284)
Q Consensus 106 D~~~----~~~~----~~~~~~l~~~n--p-~a~i~~~~ 133 (284)
|+.+ ++.+ ++++++++.++ + .++++.++
T Consensus 155 Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iS 193 (435)
T 1jny_A 155 DLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVV 193 (435)
T ss_dssp GGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECB
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEee
Confidence 9987 3333 34445554443 2 36677665
No 37
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.39 E-value=0.14 Score=40.32 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=46.3
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEccc-chHHhhhhcCCccchHHHHHHH------hhcCEEE
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSK-HAMQHLNEVKPRFVVNEAVEQV------AYADRII 101 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~-~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~iv 101 (284)
.....+++++|.............. ..-..+.+|.|+|+. .... +.... .++ ..+.... ...-+||
T Consensus 90 ~~~~~l~Dt~G~~~~~~~~~~~~~~----~~~~~~~~i~v~d~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~p~ilv 162 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLRYKLSDYLKT----RAKFVKGLIFMVDSTVDPKK-LTTTA-EFL-VDILSITESSCENGIDILIA 162 (193)
T ss_dssp CTTCSEEEETTCCBSSCCHHHHHHH----HGGGEEEEEEEEETTCCHHH-HHHHH-HHH-HHHHHHHHHHSTTCCCEEEE
T ss_pred CCeEEEEECCCCchHHHHHHHHHHh----hcccCCEEEEEEECCCCchh-HHHHH-HHH-HHHHhhhhhccccCCCEEEE
Confidence 3466788999987654333222110 011257899999998 3222 11110 011 1111111 2334788
Q ss_pred EccCCCCChhHHHHHHHHHH
Q 023301 102 LNKIDLVTETELGSLTERIK 121 (284)
Q Consensus 102 lnK~D~~~~~~~~~~~~~l~ 121 (284)
+||+|+.+....+.+.+.++
T Consensus 163 ~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 163 CNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EECTTSTTCCCHHHHHHHHH
T ss_pred EEchHhcCCCCHHHHHHHHH
Confidence 89999987766666666554
No 38
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.39 E-value=0.017 Score=48.78 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=54.5
Q ss_pred CCEEEEecCCCCCcHHH------HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEE
Q 023301 30 FDHIVIETTGLAKPAPV------IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRI 100 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i------~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~i 100 (284)
....|++++|.....+. -+.+.. ..+ ..-..+.+|.|+|+.+....+ .+..|+. ..-++
T Consensus 48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~-~~~-~~~~~d~vi~VvDas~~~~~~----------~l~~~l~~~~~pvil 115 (256)
T 3iby_A 48 HLIEITDLPGVYSLVANAEGISQDEQIAA-QSV-IDLEYDCIINVIDACHLERHL----------YLTSQLFELGKPVVV 115 (256)
T ss_dssp EEEEEEECCCCSSCC------CHHHHHHH-HHH-HHSCCSEEEEEEEGGGHHHHH----------HHHHHHTTSCSCEEE
T ss_pred eEEEEEeCCCcccccccccCCCHHHHHHH-HHH-hhCCCCEEEEEeeCCCchhHH----------HHHHHHHHcCCCEEE
Confidence 35789999999876531 111111 011 012478899999999954331 1234444 45689
Q ss_pred EEccCCCCChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 101 ILNKIDLVTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 101 vlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+||+|+.+...+....+.+.+.. ..+++.++. .....+.++
T Consensus 116 v~NK~Dl~~~~~~~~~~~~l~~~l-g~~vi~~SA~~g~gi~el~ 158 (256)
T 3iby_A 116 ALNMMDIAEHRGISIDTEKLESLL-GCSVIPIQAHKNIGIPALQ 158 (256)
T ss_dssp EEECHHHHHHTTCEECHHHHHHHH-CSCEEECBGGGTBSHHHHH
T ss_pred EEEChhcCCcCCcHHHHHHHHHHc-CCCEEEEECCCCCCHHHHH
Confidence 999999865432211122233222 267776653 233444444
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.37 E-value=0.57 Score=35.90 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=48.4
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivlnK 104 (284)
...+++++|......+.... + -..+.++.|+|+...... ... ..+. ..+.... ...=++|+||
T Consensus 57 ~~~i~Dt~G~~~~~~~~~~~-----~---~~~~~~i~v~d~~~~~s~-~~~-~~~~-~~~~~~~~~~~~~~~p~i~v~nK 125 (177)
T 1wms_A 57 TMQIWDTAGQERFRSLRTPF-----Y---RGSDCCLLTFSVDDSQSF-QNL-SNWK-KEFIYYADVKEPESFPFVILGNK 125 (177)
T ss_dssp EEEEEECCCCGGGHHHHGGG-----G---TTCSEEEEEEETTCHHHH-HTH-HHHH-HHHHHHHTCSCTTTSCEEEEEEC
T ss_pred EEEEEeCCCchhhhhhHHHH-----H---hcCCEEEEEEECcCHHHH-HHH-HHHH-HHHHHHccccccCCCcEEEEEEC
Confidence 56788999976665543322 1 135678999999875432 111 0011 1111111 1133788899
Q ss_pred CCCCChh-HHHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTET-ELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~-~~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+.+.+ ..+.+.++.+. ....+++.++
T Consensus 126 ~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~S 154 (177)
T 1wms_A 126 IDISERQVSTEEAQAWCRD-NGDYPYFETS 154 (177)
T ss_dssp TTCSSCSSCHHHHHHHHHH-TTCCCEEECC
T ss_pred CcccccccCHHHHHHHHHh-cCCceEEEEe
Confidence 9986322 23444444442 3456777665
No 40
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=92.35 E-value=0.36 Score=43.39 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=51.7
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
...+.|++|+|..+....... ..-..+.+|.|+|+...... +. +... ....+..... ++++||+|+
T Consensus 74 ~~~~~iiDtpG~~~f~~~~~~--------~~~~aD~~ilVvda~~g~~~--qt--~~~l-~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 74 KRHYSHVDCPGHADYIKNMIT--------GAAQMDGAILVVSAADGPMP--QT--REHI-LLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp SCEEEEEECCCSGGGHHHHHH--------HHTTCSSEEEEEETTTCCCH--HH--HHHH-HHHHHTTCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHHHHHHH--------HHHHCCEEEEEEECCCCCcH--HH--HHHH-HHHHHcCCCEEEEEEECccc
Confidence 357899999998774332211 11246789999999763211 10 0000 1123444454 478999999
Q ss_pred CC-hhHHH----HHHHHHHHhCC---CCceeeec
Q 023301 108 VT-ETELG----SLTERIKHINA---MAPVKLAK 133 (284)
Q Consensus 108 ~~-~~~~~----~~~~~l~~~np---~a~i~~~~ 133 (284)
.+ .+.++ +++++++.++. ..+++.++
T Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~S 174 (405)
T 2c78_A 141 VDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGS 174 (405)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECC
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccccCCCEEEcc
Confidence 84 33333 34555555542 46777654
No 41
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=92.17 E-value=0.28 Score=46.70 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=49.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchH-HHHHHHhhc-CEEEEccC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVN-EAVEQVAYA-DRIILNKI 105 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~-~~~~Qi~~A-d~ivlnK~ 105 (284)
..+.|++|+|........ . ...-..+.+|.|||+..-. ..+.- .+..... ....++... =+||+||+
T Consensus 245 ~~~~iiDTPG~e~f~~~~---~-----~~~~~aD~~llVVDa~~g~~e~~~~~-~~qt~e~l~~~~~lgi~~iIVVvNKi 315 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNA---I-----MGISQADMAILCVDCSTNAFESGFDL-DGQTKEHMLLASSLGIHNLIIAMNKM 315 (611)
T ss_dssp CEEEEEECCSSSCHHHHH---T-----TTSSCCSEEEEEEECSHHHHHTTCCT-TSHHHHHHHHHHTTTCCEEEEEEECT
T ss_pred ceEEEEECCCCcccHHHH---H-----HHHhhcCceEEEEECCCCcccccchh-hhHHHHHHHHHHHcCCCeEEEEEecc
Confidence 378999999987643211 1 1123478899999998732 10000 0000001 112233333 35668999
Q ss_pred CCCC--hhHHHHHHHHHH----HhC--C-CCceeeec
Q 023301 106 DLVT--ETELGSLTERIK----HIN--A-MAPVKLAK 133 (284)
Q Consensus 106 D~~~--~~~~~~~~~~l~----~~n--p-~a~i~~~~ 133 (284)
|+++ ....+.+.+.++ .+. + .++++.++
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vS 352 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPIS 352 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccCccEEeee
Confidence 9987 333444444443 332 1 46777665
No 42
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.11 E-value=0.42 Score=41.14 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=44.9
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeecc-CCCCh
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKY-GSVDM 139 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~ 139 (284)
..+.+|.|+|+.+........ ++++. . ..+-...-+||+||+|+.+..+.+++.++++..+...++++++. .....
T Consensus 84 ~ad~vilV~D~~~~~~s~~~l-~~~l~-~-~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv 160 (301)
T 1u0l_A 84 NVDQVILVVTVKMPETSTYII-DKFLV-L-AEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGI 160 (301)
T ss_dssp SCCEEEEEECSSTTCCCHHHH-HHHHH-H-HHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred cCCEEEEEEeCCCCCCCHHHH-HHHHH-H-HHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCH
Confidence 688999999998632111110 11111 1 11122344788899999887655455566655543266777664 33455
Q ss_pred hhhhc
Q 023301 140 DFVLG 144 (284)
Q Consensus 140 ~~l~~ 144 (284)
+.++.
T Consensus 161 ~~lf~ 165 (301)
T 1u0l_A 161 EELKE 165 (301)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 43
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.06 E-value=0.77 Score=35.21 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=46.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivlnK 104 (284)
...+++++|......+... .+ -..+.+|.|+|+...... .+. ..++ ..+.... ...-+||+||
T Consensus 59 ~~~l~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~-~~~-~~~~-~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 59 TMQVWDTAGQERFQSLGVA-----FY---RGADCCVLVYDVTNASSF-ENI-KSWR-DEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp EEEEECCC----------C-----CS---TTCCEEEEEEETTCHHHH-HTH-HHHH-HHHHHHHCCSCTTTCCEEEEEEC
T ss_pred EEEEEECCCChHhhhhhHH-----Hh---hcCCEEEEEEECCChHHH-HHH-HHHH-HHHHHHhcccCcCCCcEEEEEEC
Confidence 4578889985544332211 11 245789999999875432 111 0011 1111111 1234788999
Q ss_pred CCCCChhH---HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE---LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~---~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+... .+.+.++.+ .....+++.++. .......++
T Consensus 128 ~Dl~~~~~~v~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~ 169 (182)
T 1ky3_A 128 IDAEESKKIVSEKSAQELAK-SLGDIPLFLTSAKNAINVDTAF 169 (182)
T ss_dssp TTSCGGGCCSCHHHHHHHHH-HTTSCCEEEEBTTTTBSHHHHH
T ss_pred CccccccccCCHHHHHHHHH-hcCCCeEEEEecCCCCCHHHHH
Confidence 99964321 333444433 234567777653 233444443
No 44
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.98 E-value=0.23 Score=37.87 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=43.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDLV 108 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~~ 108 (284)
...+++++|......+.. ..+ -..+.++.|+|+.+.... .... .++ ..+.... ...=++|+||+|+.
T Consensus 56 ~l~i~Dt~G~~~~~~~~~-----~~~---~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~piilv~nK~Dl~ 124 (170)
T 1z08_A 56 NLAIWDTAGQERFHALGP-----IYY---RDSNGAILVYDITDEDSF-QKVK-NWV-KELRKMLGNEICLCIVGNKIDLE 124 (170)
T ss_dssp EEEEEECCCC-------C-----CSS---TTCSEEEEEEETTCHHHH-HHHH-HHH-HHHHHHHGGGSEEEEEEECGGGG
T ss_pred EEEEEECCCcHhhhhhHH-----HHh---ccCCEEEEEEECcCHHHH-HHHH-HHH-HHHHHhcCCCCeEEEEEECcccc
Confidence 456779999654433211 111 245789999999875432 1110 011 1111111 11237889999996
Q ss_pred ChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 109 TETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 109 ~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
++.+ .+..+++.+..+ ++++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~--~~~~~~S 149 (170)
T 1z08_A 125 KERHVSIQEAESYAESVG--AKHYHTS 149 (170)
T ss_dssp GGCCSCHHHHHHHHHHTT--CEEEEEB
T ss_pred cccccCHHHHHHHHHHcC--CeEEEec
Confidence 5322 344555555443 5666655
No 45
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.86 E-value=0.37 Score=36.96 Aligned_cols=96 Identities=11% Similarity=0.157 Sum_probs=51.6
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK 104 (284)
...+++++|......+.... + -..+.++.|+|+.+.... ... .....++. ..=++|+||
T Consensus 64 ~~~~~Dt~G~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~piilv~nK 128 (179)
T 2y8e_A 64 RLQLWDTAGQERFRSLIPSY-----I---RDSTVAVVVYDITNTNSF-HQT------SKWIDDVRTERGSDVIIMLVGNK 128 (179)
T ss_dssp EEEEEEECCSGGGGGGSHHH-----H---HTCSEEEEEEETTCHHHH-HTH------HHHHHHHHHHHTTSSEEEEEEEC
T ss_pred EEEEEECCCcHHHHHHHHHH-----h---cCCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCcEEEEEEC
Confidence 45788999976554433221 1 135779999999774321 111 11122221 122788999
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.++.+ .+..++..+..+ .+++.++. .......++
T Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 129 TDLSDKRQVSTEEGERKAKELN--VMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp GGGGGGCCSCHHHHHHHHHHHT--CEEEEEBTTTTBSHHHHH
T ss_pred CcccccCcCCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 99965433 344455555554 56666653 233444443
No 46
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=91.75 E-value=0.51 Score=43.21 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=51.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHh--hhhcCCccchH-HHHHHHhhc-CEEEEcc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQH--LNEVKPRFVVN-EAVEQVAYA-DRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~--l~~~~~~~~~~-~~~~Qi~~A-d~ivlnK 104 (284)
...+.|++|+|-.+....... ..-..+.+|.|||+..-... +.... ..... ....++... =+|++||
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~--------~~~~aD~~ilVvda~~g~~~~sf~~~~-qt~~~~~~~~~~~v~~iivviNK 154 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMIT--------GTSQADCAILIIAGGVGEFEAGISKDG-QTREHALLAFTLGVRQLIVAVNK 154 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHH--------SSSCCSEEEEEEECSHHHHHHHTCTTS-HHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CceEEEEECCCcHHHHHHHHh--------hhhhCCEEEEEEeCCcCccccccCcch-hHHHHHHHHHHcCCCeEEEEEEc
Confidence 346899999997654332211 12367889999999864311 10000 00001 122334444 3567999
Q ss_pred CCCCC--hhHHHH----HHHHHHHhCC---CCceeeec
Q 023301 105 IDLVT--ETELGS----LTERIKHINA---MAPVKLAK 133 (284)
Q Consensus 105 ~D~~~--~~~~~~----~~~~l~~~np---~a~i~~~~ 133 (284)
+|+.+ ++.++. ++++++.+.- .++++.++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vS 192 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPIS 192 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEee
Confidence 99973 444444 4444444431 36777664
No 47
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.68 E-value=0.46 Score=37.07 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=49.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D 106 (284)
....+++++|......+.... + -..+.++.|+|+.+.... .+.. .++ ..+... -...=++|+||+|
T Consensus 60 ~~~~i~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~~piilv~NK~D 128 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRSSWNTY-----Y---TNTEFVIVVVDSTDRERI-SVTR-EEL-YKMLAHEDLRKAGLLIFANKQD 128 (187)
T ss_dssp EEEEEEECCC----CGGGHHH-----H---TTCCEEEEEEETTCTTTH-HHHH-HHH-HHHHTSGGGTTCEEEEEEECTT
T ss_pred EEEEEEECCCCHhHHHHHHHH-----h---cCCCEEEEEEeCCCHHHH-HHHH-HHH-HHHHhchhhCCCeEEEEEECCC
Confidence 456788999986543332221 1 246789999999874211 1100 001 111111 1223478889999
Q ss_pred CCChhHHHHHHHHHHHh---CCCCceeeecc-CCCChhhhh
Q 023301 107 LVTETELGSLTERIKHI---NAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~---np~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+....+++.+.++.. ....++++++. .....+.++
T Consensus 129 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 129 VKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169 (187)
T ss_dssp STTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred CcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence 97654445555555432 12345665553 233444443
No 48
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.65 E-value=0.095 Score=44.34 Aligned_cols=64 Identities=22% Similarity=0.316 Sum_probs=39.7
Q ss_pred CCEEEEecCCCCCcHH------HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh----hcCE
Q 023301 30 FDHIVIETTGLAKPAP------VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA----YADR 99 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~------i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~----~Ad~ 99 (284)
....+++++|...... +...+. ..-..+.++.|+|+.++...+. +..|+. ..-+
T Consensus 50 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~------~~~~~d~vi~v~D~~~~~~~~~----------~~~~~~~~~~~p~i 113 (271)
T 3k53_A 50 KEFLVVDLPGIYSLTAHSIDELIARNFI------LDGNADVIVDIVDSTCLMRNLF----------LTLELFEMEVKNII 113 (271)
T ss_dssp EEEEEEECCCCSCCCSSCHHHHHHHHHH------HTTCCSEEEEEEEGGGHHHHHH----------HHHHHHHTTCCSEE
T ss_pred ceEEEEeCCCccccccCCHHHHHHHHhh------hccCCcEEEEEecCCcchhhHH----------HHHHHHhcCCCCEE
Confidence 3568999999887443 221111 0124678999999999754321 123333 4558
Q ss_pred EEEccCCCCC
Q 023301 100 IILNKIDLVT 109 (284)
Q Consensus 100 ivlnK~D~~~ 109 (284)
+|+||+|+.+
T Consensus 114 lv~NK~Dl~~ 123 (271)
T 3k53_A 114 LVLNKFDLLK 123 (271)
T ss_dssp EEEECHHHHH
T ss_pred EEEEChhcCc
Confidence 8899999754
No 49
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=91.63 E-value=0.69 Score=41.10 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=51.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccc-hHHhhhhcCCccchHHHHHHHhhcC-EEEEc-cC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKH-AMQHLNEVKPRFVVNEAVEQVAYAD-RIILN-KI 105 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~-~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivln-K~ 105 (284)
...+.|++|+|-.+...-... ..-..+.+|.||| .. ...+..+ . -.+..++.... +|++| |+
T Consensus 59 ~~~i~iiDtPGh~~f~~~~~~--------~~~~aD~ailVvd-~~g~~~qt~e-----~-~~~~~~~~i~~~ivvvNNK~ 123 (370)
T 2elf_A 59 GRNMVFVDAHSYPKTLKSLIT--------ALNISDIAVLCIP-PQGLDAHTGE-----C-IIALDLLGFKHGIIALTRSD 123 (370)
T ss_dssp SSEEEEEECTTTTTCHHHHHH--------HHHTCSEEEEEEC-TTCCCHHHHH-----H-HHHHHHTTCCEEEEEECCGG
T ss_pred CeEEEEEECCChHHHHHHHHH--------HHHHCCEEEEEEc-CCCCcHHHHH-----H-HHHHHHcCCCeEEEEEEecc
Confidence 456899999998875322111 1134678999999 43 1111111 0 01234445556 88999 99
Q ss_pred CCCChhHHHHHHHHHHHhC-----CCCceee--ec
Q 023301 106 DLVTETELGSLTERIKHIN-----AMAPVKL--AK 133 (284)
Q Consensus 106 D~~~~~~~~~~~~~l~~~n-----p~a~i~~--~~ 133 (284)
|+ +++.++.+.+.++++. ...+++. ++
T Consensus 124 Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~S 157 (370)
T 2elf_A 124 ST-HMHAIDELKAKLKVITSGTVLQDWECISLNTN 157 (370)
T ss_dssp GS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred CC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccc
Confidence 99 7665555555555443 2367777 54
No 50
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.62 E-value=0.27 Score=40.50 Aligned_cols=90 Identities=10% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCEEEEecCCCCCcH----HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHH----HHHhhcCEEE
Q 023301 30 FDHIVIETTGLAKPA----PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAV----EQVAYADRII 101 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~----~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~----~Qi~~Ad~iv 101 (284)
....|++|+|+.+.. .+.+.+.. ......-..+.++.|+|+.++..... ..+ ..+. ......-+||
T Consensus 78 ~~i~liDTpG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~v~d~~~~~~~~~----~~l-~~~~~~~~~~~~~~~iiv 151 (239)
T 3lxx_A 78 TELVVVDTPGIFDTEVPNAETSKEIIR-CILLTSPGPHALLLVVPLGRYTEEEH----KAT-EKILKMFGERARSFMILI 151 (239)
T ss_dssp EEEEEEECCSCC-----CHHHHHHHHH-HHHHTTTCCSEEEEEEETTCCSSHHH----HHH-HHHHHHHHHHHGGGEEEE
T ss_pred ceEEEEECCCccCCCCCHHHHHHHHHH-HHHhcCCCCcEEEEEeeCCCCCHHHH----HHH-HHHHHHhhhhccceEEEE
Confidence 356899999998753 11222211 00001124578999999876432110 011 1111 1222357888
Q ss_pred EccCCCCChhHHH--------HHHHHHHHhCC
Q 023301 102 LNKIDLVTETELG--------SLTERIKHINA 125 (284)
Q Consensus 102 lnK~D~~~~~~~~--------~~~~~l~~~np 125 (284)
+||+|+.+...++ .+++.++....
T Consensus 152 ~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 152 FTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp EECGGGC------------CHHHHHHHHHHSS
T ss_pred EeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 9999998765554 45555555554
No 51
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.62 E-value=0.27 Score=37.55 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=42.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivln 103 (284)
....+++++|......+... .+ -..+.++.|+|+.+.... .+. ...+...+ ...=+||+|
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~-----~~---~~~d~ii~v~d~~~~~s~-~~~-----~~~~~~~~~~~~~~~~piilv~n 116 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRC-----YY---SNTDAVIYVVDSCDRDRI-GIS-----KSELVAMLEEEELRKAILVVFAN 116 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGG-----GC---TTCSEEEEEEETTCCTTH-HHH-----HHHHHHHHTCGGGTTCEEEEEEE
T ss_pred EEEEEEECCCChhhhHHHHH-----Hh---ccCCEEEEEEECCCHHHH-HHH-----HHHHHHHHhchhhCCCEEEEEEE
Confidence 34578899997654432211 11 256789999999774221 110 01111222 223378889
Q ss_pred cCCCCChhHHHHHHHHH
Q 023301 104 KIDLVTETELGSLTERI 120 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l 120 (284)
|+|+.+......+.+.+
T Consensus 117 K~Dl~~~~~~~~~~~~~ 133 (171)
T 1upt_A 117 KQDMEQAMTSSEMANSL 133 (171)
T ss_dssp CTTSTTCCCHHHHHHHH
T ss_pred CCCCcCCCCHHHHHHHh
Confidence 99998764444454444
No 52
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.48 E-value=0.85 Score=35.03 Aligned_cols=96 Identities=9% Similarity=0.080 Sum_probs=50.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK 104 (284)
...+++++|......+.... + -..+.+|.|+|+...... ... ..+..++. ..=+||+||
T Consensus 62 ~~~i~Dt~G~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~p~i~v~nK 126 (181)
T 2efe_B 62 KFEIWDTAGQERYHSLAPMY-----Y---RGAAAAIIVFDVTNQASF-ERA------KKWVQELQAQGNPNMVMALAGNK 126 (181)
T ss_dssp EEEEEECCCSGGGGGGTHHH-----H---TTCSEEEEEEETTCHHHH-HHH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCChhhhhhhHHH-----h---ccCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCcEEEEEEC
Confidence 45778899965433322211 1 135789999999775432 111 11122222 223678899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+..+ .+.++++.+.. ..+++.++. .......++
T Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 127 SDLLDARKVTAEDAQTYAQEN--GLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp TTCTTTCCSCHHHHHHHHHHT--TCEEEECCSSSCTTHHHHH
T ss_pred CcccccccCCHHHHHHHHHHc--CCEEEEEECCCCCCHHHHH
Confidence 99965432 34455555543 356766653 233444444
No 53
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.45 E-value=0.38 Score=37.64 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=47.2
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK 104 (284)
...+++++|......+... . .-..+.+|.|+|+.+.... ... ..+..++. ..=+||+||
T Consensus 72 ~~~l~Dt~G~~~~~~~~~~-----~---~~~~d~ii~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~piilv~nK 136 (189)
T 2gf9_A 72 KLQIWDTAGQERYRTITTA-----Y---YRGAMGFLLMYDIANQESF-AAV------QDWATQIKTYSWDNAQVILVGNK 136 (189)
T ss_dssp EEEEEECCSCCSSCCSGGG-----G---GTTCSEEEEEEETTCHHHH-HTH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCcHHHhhhHHH-----h---ccCCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCCEEEEEEC
Confidence 4567788886554322111 1 1246789999999774432 111 11223332 234788899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+.+..+ .+.++++.+.++ .+++.++
T Consensus 137 ~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S 165 (189)
T 2gf9_A 137 CDLEDERVVPAEDGRRLADDLG--FEFFEAS 165 (189)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHT--CEEEECB
T ss_pred cccccccCCCHHHHHHHHHHcC--CeEEEEE
Confidence 99965322 234555555554 4666665
No 54
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.38 E-value=0.36 Score=37.16 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=49.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc-----CEEEEcc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA-----DRIILNK 104 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A-----d~ivlnK 104 (284)
....+++++|......+.. .. .-..+.++.|+|+...... ... .....++... -+||+||
T Consensus 58 ~~~~i~Dt~G~~~~~~~~~-----~~---~~~~d~~i~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~p~ilv~nK 122 (181)
T 3tw8_B 58 VKLQIWDTAGQERFRTITS-----TY---YRGTHGVIVVYDVTSAESF-VNV------KRWLHEINQNCDDVCRILVGNK 122 (181)
T ss_dssp EEEEEEEETTGGGCSSCCG-----GG---GTTCSEEEEEEETTCHHHH-HHH------HHHHHHHHHHCTTSEEEEEEEC
T ss_pred EEEEEEcCCCchhhhhhHH-----HH---hccCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhCCCCCEEEEEEC
Confidence 3456778888433222111 11 1245789999999874332 211 1123333322 2888999
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+... .....+..+..+ ++++.++. .......++
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 123 NDDPERKVVETEDAYKFAGQMG--IQLFETSAKENVNVEEMF 162 (181)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHT--CCEEECBTTTTBSHHHHH
T ss_pred CCCchhcccCHHHHHHHHHHcC--CeEEEEECCCCCCHHHHH
Confidence 99865322 233444444443 56776653 233444443
No 55
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.19 E-value=0.41 Score=37.12 Aligned_cols=96 Identities=11% Similarity=0.059 Sum_probs=51.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK 104 (284)
...+++++|......+..... -..+.+|.|+|+.+.... ... .....++. ..=+||+||
T Consensus 60 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~piilv~nK 124 (186)
T 2bme_A 60 KLQIWDTAGQERFRSVTRSYY--------RGAAGALLVYDITSRETY-NAL------TNWLTDARMLASQNIVIILCGNK 124 (186)
T ss_dssp EEEEEEECCSGGGHHHHHTTS--------TTCSEEEEEEETTCHHHH-HTH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCcHHHHHHHHHHH--------hcCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhcCCCCcEEEEEEC
Confidence 556889999776655433221 245779999999875432 111 11122222 123788899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+..+ .....++.+.. ..++++++. .......++
T Consensus 125 ~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi~~l~ 164 (186)
T 2bme_A 125 KDLDADREVTFLEASRFAQEN--ELMFLETSALTGENVEEAF 164 (186)
T ss_dssp GGGGGGCCSCHHHHHHHHHHT--TCEEEECCTTTCTTHHHHH
T ss_pred cccccccccCHHHHHHHHHHc--CCEEEEecCCCCCCHHHHH
Confidence 99964322 23444444433 356766653 233444443
No 56
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.08 E-value=0.86 Score=35.48 Aligned_cols=101 Identities=12% Similarity=0.139 Sum_probs=47.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D 106 (284)
.+..|++++|......+.... + -..+.++.|+|+...... .+.. .+ ...+.... ...=+||+||+|
T Consensus 69 ~~~~l~Dt~G~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~-~~~~-~~-~~~i~~~~~~~~~p~ilv~nK~D 137 (190)
T 3con_A 69 CLLDILDTAGQEEYSAMRDQY-----M---RTGEGFLCVFAINNSKSF-ADIN-LY-REQIKRVKDSDDVPMVLVGNKCD 137 (190)
T ss_dssp EEEEEEECCC----------------C---TTCSEEEEEEETTCHHHH-HHHH-HH-HHHHHHHHTCSCCCEEEEEECTT
T ss_pred EEEEEEECCChHHHHHHHHHh-----h---CcCCEEEEEEECcCHHHH-HHHH-HH-HHHHHHHhCCCCCeEEEEEECCc
Confidence 346788999976544433221 1 135678899998775432 1110 00 01111111 123478889999
Q ss_pred CCChh-HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 107 LVTET-ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~-~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+.. ..+.++++.+..+ .+++.++. .......++
T Consensus 138 l~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 138 LPTRTVDTKQAHELAKSYG--IPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp CSCCCSCHHHHHHHHHHHT--CCEEECCTTTCTTHHHHH
T ss_pred CCcccCCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 86521 2344555555554 46666553 233444443
No 57
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.97 E-value=0.57 Score=36.80 Aligned_cols=96 Identities=15% Similarity=0.160 Sum_probs=52.2
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivlnK 104 (284)
...+++++|......+.... + -..+.+|.|+|+.+.... ... .....++ ...=+||+||
T Consensus 73 ~~~i~Dt~G~~~~~~~~~~~-----~---~~~d~iilV~d~~~~~s~-~~~------~~~~~~i~~~~~~~~piiiv~NK 137 (192)
T 2fg5_A 73 KFLIWDTAGQERFHSLAPMY-----Y---RGSAAAVIVYDITKQDSF-YTL------KKWVKELKEHGPENIVMAIAGNK 137 (192)
T ss_dssp EEEEEEECCSGGGGGGTHHH-----H---TTCSEEEEEEETTCTHHH-HHH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEcCCCchhhHhhhHHh-----h---ccCCEEEEEEeCCCHHHH-HHH------HHHHHHHHHhCCCCCcEEEEEEC
Confidence 46778999966544432221 1 135789999999775432 111 1122223 2234688899
Q ss_pred CCCCChh--HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTET--ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~--~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+.. ..+.++++.+..+ ++++.++. .......++
T Consensus 138 ~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 138 CDLSDIREVPLKDAKEYAESIG--AIVVETSAKNAINIEELF 177 (192)
T ss_dssp GGGGGGCCSCHHHHHHHHHTTT--CEEEECBTTTTBSHHHHH
T ss_pred cccccccccCHHHHHHHHHHcC--CEEEEEeCCCCcCHHHHH
Confidence 9996422 2345556555443 56776653 233444444
No 58
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.89 E-value=0.65 Score=36.83 Aligned_cols=96 Identities=15% Similarity=0.146 Sum_probs=51.3
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK 104 (284)
...+++++|......+.. ..+ -..+.+|.|+|+...... ... ......+. ..=+||+||
T Consensus 58 ~~~l~Dt~G~~~~~~~~~-----~~~---~~~d~vilv~d~~~~~s~-~~~------~~~~~~i~~~~~~~~piilv~nK 122 (206)
T 2bcg_Y 58 KLQIWDTAGQERFRTITS-----SYY---RGSHGIIIVYDVTDQESF-NGV------KMWLQEIDRYATSTVLKLLVGNK 122 (206)
T ss_dssp EEEEECCTTTTTTTCCCG-----GGG---TTCSEEEEEEETTCHHHH-HHH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCChHHHHHHHH-----Hhc---cCCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhcCCCCCEEEEEEC
Confidence 467889999655433211 111 245789999999875432 111 11122222 223788999
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+..+ .+...++.+..+ .+++.++. .......++
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 123 CDLKDKRVVEYDVAKEFADANK--MPFLETSALDSTNVEDAF 162 (206)
T ss_dssp TTCTTTCCSCHHHHHHHHHHTT--CCEEECCTTTCTTHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 99976322 234444444433 57776653 233444444
No 59
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.88 E-value=1.1 Score=34.42 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=43.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK 104 (284)
...+++++|......+... .+ -..+.++.|+|+...... .+. .....++. ..=+||+||
T Consensus 61 ~~~~~Dt~G~~~~~~~~~~-----~~---~~~d~ii~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~piilv~nK 125 (180)
T 2g6b_A 61 KLQMWDTAGQERFRSVTHA-----YY---RDAHALLLLYDVTNKASF-DNI------QAWLTEIHEYAQHDVALMLLGNK 125 (180)
T ss_dssp EEEEEECCCC--------C-----CG---GGCSEEEEEEETTCHHHH-HTH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCcHHHHHHHHH-----Hc---cCCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhCCCCCcEEEEEEC
Confidence 4567789996554332211 11 246789999999875432 111 11122221 233788899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+.++.+ .+..+++.+..+ .+++.++
T Consensus 126 ~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S 154 (180)
T 2g6b_A 126 VDSAHERVVKREDGEKLAKEYG--LPFMETS 154 (180)
T ss_dssp CSTTSCCCSCHHHHHHHHHHHT--CCEEECC
T ss_pred cccCcccccCHHHHHHHHHHcC--CeEEEEe
Confidence 99975322 234444444443 4666655
No 60
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.79 E-value=1.4 Score=34.70 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=49.2
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK 104 (284)
...+++++|......+.... + -..+.+|.|+|+.+.... ... ..+..++. ..=+||+||
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~piilv~nK 122 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTAY-----Y---RGAMGFILMYDITNEESF-NAV------QDWSTQIKTYSWDNAQVLLVGNK 122 (203)
T ss_dssp EEEEEEECCSGGGHHHHHTT-----G---GGCSEEEEEEETTCHHHH-HHH------HHHHHHHHHHSCSSCEEEEEEEC
T ss_pred EEEEEECCCchhhcchHHHh-----h---cCCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhcCCCCCEEEEEEC
Confidence 45678999987665543322 1 245779999999875432 111 11223332 234788899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+.+..+ .+..+++.+.++ .+++.++
T Consensus 123 ~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S 151 (203)
T 1zbd_A 123 CDMEDERVVSSERGRQLADHLG--FEFFEAS 151 (203)
T ss_dssp TTCTTSCCSCHHHHHHHHHHHT--CEEEECB
T ss_pred cccCcccccCHHHHHHHHHHCC--CeEEEEE
Confidence 99975322 344455555554 4677665
No 61
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=90.79 E-value=0.63 Score=41.81 Aligned_cols=100 Identities=19% Similarity=0.247 Sum_probs=53.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchHHHHHHHhhcCE-EEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVNEAVEQVAYADR-IILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~~~~~Qi~~Ad~-ivlnK~D 106 (284)
..+.||+++|-.+.. ... +...-..+.+|.|||+.... .+..+ .+ ....++....+ |++||+|
T Consensus 83 ~~i~iiDtPGh~~f~---~~~-----~~~~~~~D~~ilVvda~~g~~~~qt~e----~l--~~~~~~~~~~iivviNK~D 148 (410)
T 1kk1_A 83 RRVSFIDAPGHEALM---TTM-----LAGASLMDGAILVIAANEPCPRPQTRE----HL--MALQIIGQKNIIIAQNKIE 148 (410)
T ss_dssp EEEEEEECSSHHHHH---HHH-----HHCGGGCSEEEEEEETTSCSSCHHHHH----HH--HHHHHHTCCCEEEEEECGG
T ss_pred cEEEEEECCChHHHH---HHH-----HhhhhhCCEEEEEEECCCCCCChhHHH----HH--HHHHHcCCCcEEEEEECcc
Confidence 357889999954322 211 11223568899999998531 11111 01 12234444444 6689999
Q ss_pred CCChhHHH----HHHHHHHHhC-CCCceeeecc-CCCChhhhh
Q 023301 107 LVTETELG----SLTERIKHIN-AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~~~~----~~~~~l~~~n-p~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+.++.. +++++++... ...+++.++. .......|+
T Consensus 149 l~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~ 191 (410)
T 1kk1_A 149 LVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLV 191 (410)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHH
Confidence 99876543 3334433321 3567777653 233444443
No 62
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=90.72 E-value=0.7 Score=41.91 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=49.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHH-hhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQ-HLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~-~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
..+.|++|+|..+....... ..-..+.+|.|+|+..-.. +..+ .+ .+..++.... +||+||+|+
T Consensus 104 ~~~~iiDtpGh~~f~~~~~~--------~~~~aD~~ilVvDa~~g~~~qt~~----~l--~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 104 RKFIIADTPGHEQYTRNMAT--------GASTCDLAIILVDARYGVQTQTRR----HS--YIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp EEEEEEECCCSGGGHHHHHH--------HHTTCSEEEEEEETTTCSCHHHHH----HH--HHHHHTTCCEEEEEEECTTT
T ss_pred ceEEEEECCChHHHHHHHHH--------HHhhCCEEEEEEECCCCCcHHHHH----HH--HHHHHcCCCeEEEEEEcCcC
Confidence 35789999997764332211 1235678999999976321 1100 00 1223444333 667999999
Q ss_pred CC--hhHHHH----HHHHHHHhC---CCCceeeec
Q 023301 108 VT--ETELGS----LTERIKHIN---AMAPVKLAK 133 (284)
Q Consensus 108 ~~--~~~~~~----~~~~l~~~n---p~a~i~~~~ 133 (284)
.+ ++.++. ++++++.++ +..+++.++
T Consensus 170 ~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vS 204 (434)
T 1zun_B 170 NGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMS 204 (434)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECC
T ss_pred CcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEe
Confidence 86 333333 344444454 235677655
No 63
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.72 E-value=0.26 Score=38.40 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=41.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D 106 (284)
....+++++|...... +.. ..+ -..+.++.|+|+.+.... .+.. .++ ..+... -...-++|+||+|
T Consensus 62 ~~~~~~Dt~G~~~~~~----~~~-~~~---~~~d~ii~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~~piilv~nK~D 130 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRS----YWR-NYF---ESTDGLIWVVDSADRQRM-QDCQ-REL-QSLLVEERLAGATLLIFANKQD 130 (186)
T ss_dssp EEEEEEEECCSHHHHT----TGG-GGC---TTCSEEEEEEETTCGGGH-HHHH-HHH-HHHHTCGGGTTCEEEEEEECTT
T ss_pred EEEEEEECCCCHhHHH----HHH-HHh---cCCCEEEEEEECcCHHHH-HHHH-HHH-HHHHhChhcCCCcEEEEEeCcc
Confidence 3457889999754322 211 111 246789999999774321 1100 000 011111 1223478889999
Q ss_pred CCChhHHHHHHHHH
Q 023301 107 LVTETELGSLTERI 120 (284)
Q Consensus 107 ~~~~~~~~~~~~~l 120 (284)
+.+....+.+.+.+
T Consensus 131 l~~~~~~~~~~~~~ 144 (186)
T 1ksh_A 131 LPGALSCNAIQEAL 144 (186)
T ss_dssp STTCCCHHHHHHHT
T ss_pred CCCCCCHHHHHHHh
Confidence 97765555554444
No 64
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.65 E-value=1 Score=41.00 Aligned_cols=94 Identities=19% Similarity=0.308 Sum_probs=52.1
Q ss_pred CCCCEEEEecCCCCC---cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 28 GQFDHIVIETTGLAK---PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~---p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
..+|+|||+|.|... -..+...+.. +.....-+.++.|+|+..-..... .... ..+-...+.||+||
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~---i~~~~~pd~vlLVlDa~~gq~a~~------~a~~-f~~~~~~~gVIlTK 247 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKE---MYDVLKPDDVILVIDASIGQKAYD------LASR-FHQASPIGSVIITK 247 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHH---HHHHHCCSEEEEEEEGGGGGGGHH------HHHH-HHHHCSSEEEEEEC
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHH---HHHhhCCcceEEEEeCccchHHHH------HHHH-HhcccCCcEEEEec
Confidence 579999999999744 1223333221 112233467899999987432111 1111 22233568899999
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 105 IDLVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 105 ~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
.|.... ...+....... ..||.....|
T Consensus 248 lD~~a~--~G~als~~~~~--g~Pi~fig~G 274 (433)
T 3kl4_A 248 MDGTAK--GGGALSAVVAT--GATIKFIGTG 274 (433)
T ss_dssp GGGCSC--HHHHHHHHHHH--TCEEEEEECC
T ss_pred cccccc--chHHHHHHHHH--CCCEEEEECC
Confidence 998542 23333444433 3566555545
No 65
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.60 E-value=0.58 Score=36.58 Aligned_cols=99 Identities=16% Similarity=0.281 Sum_probs=52.4
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~ 107 (284)
...|++++|......+..... -..+.+|.|+|+.+.... .... .++ .. ..+. ...-+||+||+|+
T Consensus 66 ~~~i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~-i~~~~~~~~p~ilv~nK~Dl 133 (196)
T 3tkl_A 66 KLQIWDTAGQERFRTITSSYY--------RGAHGIIVVYDVTDQESF-NNVK-QWL-QE-IDRYASENVNKLLVGNKCDL 133 (196)
T ss_dssp EEEEEEECCSGGGCTTHHHHH--------TTCSEEEEEEETTCHHHH-HTHH-HHH-HH-HHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEECCCcHhhhhhHHHHH--------hhCCEEEEEEECcCHHHH-HHHH-HHH-HH-HHHhcCCCCCEEEEEECccc
Confidence 466779999655443333221 135779999999885432 2110 011 11 1222 2344788899999
Q ss_pred CChhHH--HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTETEL--GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~~--~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+.... ...+++.+.++ +++++++. .......++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~ 170 (196)
T 3tkl_A 134 TTKKVVDYTTAKEFADSLG--IPFLETSAKNATNVEQSF 170 (196)
T ss_dssp TTTCCSCHHHHHHHHHHTT--CCEEEECTTTCTTHHHHH
T ss_pred ccccccCHHHHHHHHHHcC--CcEEEEeCCCCCCHHHHH
Confidence 765332 33444444443 57776653 233455444
No 66
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.59 E-value=0.39 Score=36.43 Aligned_cols=90 Identities=11% Similarity=0.197 Sum_probs=47.2
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
...+++++|......+.... + -..+.++.|+|+...... .+.. .++ ..+.... ...-++|+||+|+.+
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~i~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 55 RLMLWDTAGQEEFDAITKAY-----Y---RGAQACVLVFSTTDRESF-EAIS-SWR-EKVVAEVGDIPTALVQNKIDLLD 123 (168)
T ss_dssp EEEEECCTTGGGTTCCCHHH-----H---TTCCEEEEEEETTCHHHH-HTHH-HHH-HHHHHHHCSCCEEEEEECGGGGG
T ss_pred EEEEEcCCCcHhHHHHHHHH-----h---cCCCEEEEEEECcCHHHH-HHHH-HHH-HHHHHhCCCCCEEEEEECcccCc
Confidence 56778899854433221111 1 146789999999875422 2110 011 1111211 345578889999865
Q ss_pred hhH--HHHHHHHHHHhCCCCceeeec
Q 023301 110 ETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 110 ~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
..+ .+.+++..+..+ .+++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~--~~~~~~S 147 (168)
T 1z2a_A 124 DSCIKNEEAEGLAKRLK--LRFYRTS 147 (168)
T ss_dssp GCSSCHHHHHHHHHHHT--CEEEECB
T ss_pred ccccCHHHHHHHHHHcC--CeEEEEe
Confidence 322 344555555443 4666655
No 67
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=90.55 E-value=0.5 Score=42.50 Aligned_cols=100 Identities=23% Similarity=0.319 Sum_probs=52.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchHHHHHHHhhcC-EEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVNEAVEQVAYAD-RIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D 106 (284)
..+.|++++|-.+. .... ....-..+.+|.|+|+..-. .+..+ .+ ....++.... +|++||+|
T Consensus 81 ~~i~iiDtPGh~~f---~~~~-----~~~~~~~D~~ilVvda~~g~~~~qt~e----~l--~~~~~l~~~~iivv~NK~D 146 (408)
T 1s0u_A 81 RRVSFVDSPGHETL---MATM-----LSGASLMDGAILVIAANEPCPQPQTKE----HL--MALEILGIDKIIIVQNKID 146 (408)
T ss_dssp EEEEEEECSSHHHH---HHHH-----HTTCSCCSEEEEEEETTSCSSCHHHHH----HH--HHHHHTTCCCEEEEEECTT
T ss_pred cEEEEEECCCHHHH---HHHH-----HHhHhhCCEEEEEEECCCCCCCchhHH----HH--HHHHHcCCCeEEEEEEccC
Confidence 35788999995332 2221 12233678899999998521 11111 01 1123344333 58889999
Q ss_pred CCChhH----HHHHHHHHHHhC-CCCceeeecc-CCCChhhhh
Q 023301 107 LVTETE----LGSLTERIKHIN-AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~~----~~~~~~~l~~~n-p~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+.++ .++++++++... ...+++.++. ....++.|+
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~ 189 (408)
T 1s0u_A 147 LVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLL 189 (408)
T ss_dssp SSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHH
Confidence 987543 455566555433 3567777653 223444443
No 68
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.52 E-value=0.48 Score=37.41 Aligned_cols=77 Identities=19% Similarity=0.312 Sum_probs=39.2
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-------hhcCEEE
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-------AYADRII 101 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-------~~Ad~iv 101 (284)
.....+++++|......+.... + -..+.++.|+|+.+.... .+. .....++ ...-+||
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~-----~---~~~d~iilv~D~~~~~s~-~~~------~~~l~~~~~~~~~~~~piilv 136 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHY-----F---QNTQGLIFVVDSNDRERV-QES------ADELQKMLQEDELRDAVLLVF 136 (192)
T ss_dssp TEEEEEEECC-----CTTHHHH-----H---HTCCEEEEEEETTCGGGH-HHH------HHHHHHHHTCGGGTTCEEEEE
T ss_pred CEEEEEEECCCCHhHHHHHHHH-----h---ccCCEEEEEEECCCHHHH-HHH------HHHHHHHhcccccCCCeEEEE
Confidence 3456788999975543322221 1 246779999999775321 111 0112222 2234788
Q ss_pred EccCCCCChhHHHHHHHHH
Q 023301 102 LNKIDLVTETELGSLTERI 120 (284)
Q Consensus 102 lnK~D~~~~~~~~~~~~~l 120 (284)
+||+|+.+....+++.+.+
T Consensus 137 ~NK~Dl~~~~~~~~i~~~~ 155 (192)
T 2b6h_A 137 ANKQDMPNAMPVSELTDKL 155 (192)
T ss_dssp EECTTSTTCCCHHHHHHHT
T ss_pred EECCCCCCCCCHHHHHHHh
Confidence 8999997654444444433
No 69
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.50 E-value=0.46 Score=40.91 Aligned_cols=80 Identities=21% Similarity=0.194 Sum_probs=44.0
Q ss_pred eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhH---HHHHHHHHHHhCCCCceeeecc-C
Q 023301 60 VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETE---LGSLTERIKHINAMAPVKLAKY-G 135 (284)
Q Consensus 60 ~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~---~~~~~~~l~~~np~a~i~~~~~-g 135 (284)
-.++.++.|+|+.+........ ++++. ...+-...-+||+||+|+.++.+ .+.+.+..+.++ .+++.++. .
T Consensus 78 ~naD~vliV~d~~~p~~s~~~l-~~~l~--~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g--~~~~~~SA~~ 152 (302)
T 2yv5_A 78 ANVDRVIIVETLKMPEFNNYLL-DNMLV--VYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG--YDVLKVSAKT 152 (302)
T ss_dssp ESCCEEEEEECSTTTTCCHHHH-HHHHH--HHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT--CEEEECCTTT
T ss_pred HhcCEEEEEEECCCCCCCHHHH-HHHHH--HHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC--CeEEEEECCC
Confidence 4788999999998632111100 11111 11122233478899999988753 444555555443 46776653 3
Q ss_pred CCChhhhhc
Q 023301 136 SVDMDFVLG 144 (284)
Q Consensus 136 ~v~~~~l~~ 144 (284)
....+.++.
T Consensus 153 g~gi~~L~~ 161 (302)
T 2yv5_A 153 GEGIDELVD 161 (302)
T ss_dssp CTTHHHHHH
T ss_pred CCCHHHHHh
Confidence 445566654
No 70
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.40 E-value=0.54 Score=36.83 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=40.2
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D~ 107 (284)
...+++++|......+.... + -..+.+|.|+|+.+.... .... .++ ..+..+ -...=+||+||+|+
T Consensus 68 ~~~l~Dt~G~~~~~~~~~~~-----~---~~~d~ii~v~D~~~~~s~-~~~~-~~~-~~~~~~~~~~~~piilv~NK~Dl 136 (188)
T 1zd9_A 68 TIKLWDIGGQPRFRSMWERY-----C---RGVSAIVYMVDAADQEKI-EASK-NEL-HNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp EEEEEEECCSHHHHTTHHHH-----H---TTCSEEEEEEETTCGGGH-HHHH-HHH-HHHHTCGGGTTCCEEEEEECTTS
T ss_pred EEEEEECCCCHhHHHHHHHH-----H---ccCCEEEEEEECCCHHHH-HHHH-HHH-HHHHhCcccCCCCEEEEEECCCC
Confidence 45688999965433322221 1 245779999999764321 1100 001 011111 12234788899999
Q ss_pred CChhHHHHHHHHH
Q 023301 108 VTETELGSLTERI 120 (284)
Q Consensus 108 ~~~~~~~~~~~~l 120 (284)
.+....+++.+.+
T Consensus 137 ~~~~~~~~~~~~~ 149 (188)
T 1zd9_A 137 PGALDEKELIEKM 149 (188)
T ss_dssp TTCCCHHHHHHHT
T ss_pred ccCCCHHHHHHHh
Confidence 7653344444433
No 71
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.39 E-value=0.44 Score=39.63 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=41.9
Q ss_pred CCCEEEEecCCCCCcHHHH-HHhcccccc----cceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhc
Q 023301 29 QFDHIVIETTGLAKPAPVI-ETFCTDELV----SQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYA 97 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~-~~l~~~~~l----~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~A 97 (284)
.....|++|+|+.++..-. +.+.. ... ...-..+.++.|+|+.++..... .+... ..++ ...
T Consensus 69 ~~~i~liDTPG~~~~~~~~~~~~~~-~i~~~~~~~~~~~d~il~V~d~~~~~~~~~-----~~~~~-l~~~~~~~~~~~~ 141 (247)
T 3lxw_A 69 KCHVEVVDTPDIFSSQVSKTDPGCE-ERGHCYLLSAPGPHALLLVTQLGRFTAQDQ-----QAVRQ-VRDMFGEDVLKWM 141 (247)
T ss_dssp TEEEEEEECCSCSSTTHHHHSTTSH-HHHHHHHHHTTCCSEEEEEEETTBCCHHHH-----HHHHH-HHHHHCGGGGGGE
T ss_pred CcEEEEEECCCCCCCCCCcHHHHHH-HHHHHHHhcCCCCCEEEEEEeCCCCCHHHH-----HHHHH-HHHHhChhhhccE
Confidence 3457899999998765433 11111 000 01135678999999987533211 11111 2222 455
Q ss_pred CEEEEccCCCCCh
Q 023301 98 DRIILNKIDLVTE 110 (284)
Q Consensus 98 d~ivlnK~D~~~~ 110 (284)
=+|++||.|+.+.
T Consensus 142 iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 142 VIVFTRKEDLAGG 154 (247)
T ss_dssp EEEEECGGGGTTC
T ss_pred EEEEEchHhcCCC
Confidence 6788899999653
No 72
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.37 E-value=2.4 Score=36.37 Aligned_cols=91 Identities=19% Similarity=0.275 Sum_probs=50.4
Q ss_pred CCCCEEEEecCCCCC--cHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh--h-cCEEE
Q 023301 28 GQFDHIVIETTGLAK--PAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA--Y-ADRII 101 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~--p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~--~-Ad~iv 101 (284)
.++|+|||.|+|... ... +...+. .+......+.++.|+|+......+ ..+ .++. . -..||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~---~i~~~~~~d~vllVvda~~g~~~~---------~~~-~~~~~~~~i~gvV 245 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMK---NIYEAIKPDEVTLVIDASIGQKAY---------DLA-SKFNQASKIGTII 245 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHH---HHHHHHCCSEEEEEEEGGGGGGHH---------HHH-HHHHHTCTTEEEE
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHH---HHHHHhcCCEEEEEeeCCchHHHH---------HHH-HHHHhhCCCCEEE
Confidence 678999999999988 432 332221 111223567789999997532211 111 1221 1 25789
Q ss_pred EccCCCCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 102 LNKIDLVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 102 lnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
+||.|.... ...+....... ..+|.....|
T Consensus 246 lnk~D~~~~--~g~~~~~~~~~--~~pi~~i~~G 275 (297)
T 1j8m_F 246 ITKMDGTAK--GGGALSAVAAT--GATIKFIGTG 275 (297)
T ss_dssp EECGGGCTT--HHHHHHHHHTT--TCCEEEEECS
T ss_pred EeCCCCCcc--hHHHHHHHHHH--CcCEEEEeCC
Confidence 999998542 23333433333 3566554444
No 73
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=90.30 E-value=0.65 Score=42.24 Aligned_cols=96 Identities=9% Similarity=0.108 Sum_probs=49.1
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHh--hhhcCCccchHH-HHHHHhhc-CEEEEcc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQH--LNEVKPRFVVNE-AVEQVAYA-DRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~--l~~~~~~~~~~~-~~~Qi~~A-d~ivlnK 104 (284)
+..+.|+.|+|-.+...... ...-..+.++.|||+...... +.. .+...... ....+... =+|++||
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~--------~~~~~aD~~ilVVDa~~g~~e~~~~~-~~qt~e~l~~~~~~~v~~iIvviNK 164 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMI--------GGASQADLAVLVISARKGEFETGFEK-GGQTREHAMLAKTAGVKHLIVLINK 164 (439)
T ss_pred CeEEEEEECCChHHHHHHHH--------hhHhhCCEEEEEEECCCCccccccCC-CchHHHHHHHHHHcCCCeEEEEeec
Confidence 34678999999755422111 112357889999999874310 000 00000011 12334444 3678899
Q ss_pred CCCCC----hhHHHHHHH----HHHHhC--C--CCceeeec
Q 023301 105 IDLVT----ETELGSLTE----RIKHIN--A--MAPVKLAK 133 (284)
Q Consensus 105 ~D~~~----~~~~~~~~~----~l~~~n--p--~a~i~~~~ 133 (284)
+|+.+ .+..+.+.+ +++.+. | .++++.++
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iS 205 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCS 205 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEee
Confidence 99964 233333333 333332 2 45677654
No 74
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.28 E-value=0.72 Score=34.80 Aligned_cols=91 Identities=10% Similarity=0.068 Sum_probs=49.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~ 107 (284)
...+++++|......+..... -..+.++.|+|+...... .+.. .+. ..+.... ...=++|+||+|+
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYM--------KNGQGFALVYSITAQSTF-NDLQ-DLR-EQILRVKDTEDVPMILVGNKCDL 120 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHH--------HHCSEEEEEEETTCHHHH-HTHH-HHH-HHHHHHHCCSCCCEEEEEECTTC
T ss_pred EEEEEECCChHHHHHHHHHHh--------ccCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHhhCcCCCcEEEEEECccc
Confidence 357889999877665444322 135678999999875432 1110 011 1112221 1233788899999
Q ss_pred CChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 108 VTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
.+..+ .+.+.+..+.+ +..+++.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~~~~~~~~S 147 (167)
T 1c1y_A 121 EDERVVGKEQGQNLARQW-CNCAFLESS 147 (167)
T ss_dssp GGGCCSCHHHHHHHHHHT-TSCEEEECB
T ss_pred cccccCCHHHHHHHHHHc-cCCcEEEec
Confidence 65432 34444444443 456777665
No 75
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=90.25 E-value=0.69 Score=36.49 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=45.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---------hcCEE
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---------YADRI 100 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---------~Ad~i 100 (284)
....|++++|......+... .+ -..+.+|.|+|+.+.... ... ..+..++. ..=+|
T Consensus 73 ~~~~l~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~~~~piil 137 (208)
T 2yc2_C 73 VELFLLDTAGSDLYKEQISQ-----YW---NGVYYAILVFDVSSMESF-ESC------KAWFELLKSARPDRERPLRAVL 137 (208)
T ss_dssp EEEEEEETTTTHHHHHHHST-----TC---CCCCEEEEEEETTCHHHH-HHH------HHHHHHHHHHCSCTTSCCEEEE
T ss_pred EEEEEEECCCcHHHHHHHHH-----HH---hhCcEEEEEEECCCHHHH-HHH------HHHHHHHHHhhcccccCCcEEE
Confidence 45788899998554332211 11 246789999999875432 111 11222322 22378
Q ss_pred EEccCCCCC-hhH--HHHHHHHHHHhCCCCceeeec
Q 023301 101 ILNKIDLVT-ETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 101 vlnK~D~~~-~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
|+||+|+.+ ..+ .+.+.++.+.++ .+++.++
T Consensus 138 v~nK~Dl~~~~~~v~~~~~~~~~~~~~--~~~~~~S 171 (208)
T 2yc2_C 138 VANKTDLPPQRHQVRLDMAQDWATTNT--LDFFDVS 171 (208)
T ss_dssp EEECC-------CCCHHHHHHHHHHTT--CEEEECC
T ss_pred EEECcccchhhccCCHHHHHHHHHHcC--CEEEEec
Confidence 889999976 222 345566666554 5666654
No 76
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=90.11 E-value=0.54 Score=42.13 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
...+.|++|+|..+...... ...-..+.+|.|+|+..-... +. +... ....+..... +|++||+|+
T Consensus 65 ~~~~~iiDtpG~~~f~~~~~--------~~~~~aD~~ilVvda~~g~~~--qt--~e~l-~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 65 ARHYAHTDCPGHADYVKNMI--------TGTAPLDGCILVVAANDGPMP--QT--REHL-LLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp SCEEEEEECSSHHHHHHHHH--------HTSSCCSEEEEEEETTTCSCH--HH--HHHH-HHHHHTTCCCEEEEEECGGG
T ss_pred CeEEEEEECCChHHHHHHHH--------hhHhhCCEEEEEEECCCCCCH--HH--HHHH-HHHHHcCCCeEEEEEECccc
Confidence 35688999999765322111 112357889999999873211 00 0000 1123344454 578999999
Q ss_pred CC-hhHH----HHHHHHHHHhCC---CCceeeec
Q 023301 108 VT-ETEL----GSLTERIKHINA---MAPVKLAK 133 (284)
Q Consensus 108 ~~-~~~~----~~~~~~l~~~np---~a~i~~~~ 133 (284)
.+ ++.+ ++++++++.++- ..+++.++
T Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~S 165 (397)
T 1d2e_A 132 VQDSEMVELVELEIRELLTEFGYKGEETPIIVGS 165 (397)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEee
Confidence 85 3333 345555655541 36777664
No 77
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.08 E-value=0.56 Score=36.72 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=47.4
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEccC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNKI 105 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK~ 105 (284)
..|++++|......+..... -..+.+|.|+|+...... ... .....++. ..=+||+||+
T Consensus 76 ~~i~Dt~G~~~~~~~~~~~~--------~~~d~vi~v~D~~~~~s~-~~~------~~~l~~i~~~~~~~~piilv~nK~ 140 (193)
T 2oil_A 76 AQIWDTAGLERYRAITSAYY--------RGAVGALLVFDLTKHQTY-AVV------ERWLKELYDHAEATIVVMLVGNKS 140 (193)
T ss_dssp EEEEEESCCCTTCTTHHHHH--------TTCCEEEEEEETTCHHHH-HTH------HHHHHHHHTTSCTTCEEEEEEECG
T ss_pred EEEEeCCCchhhhhhhHHHh--------ccCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCeEEEEEECC
Confidence 35789999876554433321 135678999999875432 111 11223332 2237888999
Q ss_pred CCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 106 DLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 106 D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
|+.+..+ .+..+++.+.. .++++.++
T Consensus 141 Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S 168 (193)
T 2oil_A 141 DLSQAREVPTEEARMFAENN--GLLFLETS 168 (193)
T ss_dssp GGGGGCCSCHHHHHHHHHHT--TCEEEEEC
T ss_pred CcccccccCHHHHHHHHHHc--CCEEEEEe
Confidence 9965322 34444444433 35677665
No 78
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.97 E-value=1 Score=33.99 Aligned_cols=86 Identities=16% Similarity=0.162 Sum_probs=45.3
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcC---EEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YAD---RIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad---~ivlnK 104 (284)
...+++++|......+..... -..+.++.|+|+.+.... .+. ..+..++. ..+ ++|.||
T Consensus 56 ~~~~~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~-~~~------~~~~~~l~~~~~~~~~iilv~nK 120 (170)
T 1z0j_A 56 KFLIWDTAGLERFRALAPMYY--------RGSAAAIIVYDITKEETF-STL------KNWVRELRQHGPPSIVVAIAGNK 120 (170)
T ss_dssp EEEEEEECCSGGGGGGTHHHH--------TTCSEEEEEEETTCHHHH-HHH------HHHHHHHHHHSCTTSEEEEEEEC
T ss_pred EEEEEcCCCchhhhcccHhhC--------cCCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhCCCCCcEEEEEEC
Confidence 456889999865444332221 134678999999875432 111 11122222 222 355599
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+.+..+ .+...+..+..+ .+++.++
T Consensus 121 ~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~S 149 (170)
T 1z0j_A 121 CDLTDVREVMERDAKDYADSIH--AIFVETS 149 (170)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTT--CEEEECB
T ss_pred CccccccccCHHHHHHHHHHcC--CEEEEEe
Confidence 99975432 233444444433 5676665
No 79
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=89.90 E-value=1.7 Score=32.47 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=48.6
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~~ 108 (284)
..+++++|......+..... -..+.++.|+|+...... .+.. .....+.... ...=++|+||+|+.
T Consensus 53 ~~l~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~-~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~ 121 (167)
T 1kao_A 53 LEILDTAGTEQFASMRDLYI--------KNGQGFILVYSLVNQQSF-QDIK--PMRDQIIRVKRYEKVPVILVGNKVDLE 121 (167)
T ss_dssp EEEEECCCTTCCHHHHHHHH--------HHCSEEEEEEETTCHHHH-HHHH--HHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred EEEEECCCchhhHHHHHHHh--------ccCCEEEEEEeCCCHHHH-HHHH--HHHHHHHHhcCCCCCCEEEEEECCccc
Confidence 66889999887766544321 134678999999874432 1110 0001122222 22347888999986
Q ss_pred ChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 109 TETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 109 ~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+..+ .+..++..+..+ .+++.++
T Consensus 122 ~~~~~~~~~~~~~~~~~~--~~~~~~S 146 (167)
T 1kao_A 122 SEREVSSSEGRALAEEWG--CPFMETS 146 (167)
T ss_dssp GGCCSCHHHHHHHHHHHT--SCEEEEC
T ss_pred ccccCCHHHHHHHHHHhC--CCEEEec
Confidence 5332 233444444443 4666654
No 80
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.84 E-value=0.4 Score=38.50 Aligned_cols=81 Identities=17% Similarity=0.201 Sum_probs=41.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivln 103 (284)
....+++++|.............. ..-..+.+|.|+|+..-...+... ..++ ..+.... ...=+||+|
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~----~~~~~~~~i~v~D~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 55 SGVTLVDFPGHVKLRYKLSDYLKT----RAKFVKGLIFMVDSTVDPKKLTTT-AEFL-VDILSITESSCENGIDILIACN 128 (218)
T ss_dssp SSCEEEECCCCGGGTHHHHHHHHH----HGGGEEEEEEEEETTSCTTCCHHH-HHHH-HHHHHHHHHHSTTCCCEEEEEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHHh----ccccCCEEEEEEECCCChHHHHHH-HHHH-HHHHhcccccccCCCCEEEEEE
Confidence 367789999997765544433211 011256789999998111111110 0011 1111111 123467889
Q ss_pred cCCCCChhHHHHH
Q 023301 104 KIDLVTETELGSL 116 (284)
Q Consensus 104 K~D~~~~~~~~~~ 116 (284)
|+|+.+......+
T Consensus 129 K~Dl~~~~~~~~~ 141 (218)
T 1nrj_B 129 KSELFTARPPSKI 141 (218)
T ss_dssp CTTSTTCCCHHHH
T ss_pred chHhcccCCHHHH
Confidence 9999876554433
No 81
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=89.61 E-value=0.15 Score=46.61 Aligned_cols=105 Identities=15% Similarity=0.281 Sum_probs=55.8
Q ss_pred CEEEEecCCCCCcHHH------HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPV------IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i------~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
.+.|+.|+|+.....+ ...+. .+...-..+.++.|+|+..-..... ..+.. .......+-+||+||
T Consensus 244 ~~~l~DT~G~~~~~~~~~~~e~~~~~~---~~~~~~~ad~~llviD~~~~~~~~~----~~~~~-~~~~~~~~~ilv~NK 315 (456)
T 4dcu_A 244 EFVIVDTAGMRKKGKVYETTEKYSVLR---ALKAIDRSEVVAVVLDGEEGIIEQD----KRIAG-YAHEAGKAVVIVVNK 315 (456)
T ss_dssp EEEETTGGGTTTBTTBCCCCSHHHHHH---HHHHHHHCSEEEEEEETTTCCCHHH----HHHHH-HHHHTTCEEEEEEEC
T ss_pred eEEEEECCCCCcCcccchHHHHHHHHH---HHHHHhhCCEEEEEEeCCCCcCHHH----HHHHH-HHHHcCCCEEEEEEC
Confidence 4678899997543211 11111 0111123567899999977321110 01111 112233456889999
Q ss_pred CCCCCh--hHHHHHHHHHHHhCC---CCceeeecc-CCCChhhhh
Q 023301 105 IDLVTE--TELGSLTERIKHINA---MAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~--~~~~~~~~~l~~~np---~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+. ...+++.+.+++..+ .++++.++. .......++
T Consensus 316 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 360 (456)
T 4dcu_A 316 WDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLM 360 (456)
T ss_dssp GGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHH
T ss_pred hhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHH
Confidence 999753 345666777776643 578887764 233444443
No 82
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.55 E-value=1 Score=34.96 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=50.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh-------cCEEEEc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY-------ADRIILN 103 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~-------Ad~ivln 103 (284)
...|++++|......+..... -..+.+|.|+|+...... .+. .....++.. .-+||+|
T Consensus 65 ~~~i~Dt~G~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~~p~ilv~n 129 (195)
T 1x3s_A 65 KLAIWDTAGQERFRTLTPSYY--------RGAQGVILVYDVTRRDTF-VKL------DNWLNELETYCTRNDIVNMLVGN 129 (195)
T ss_dssp EEEEEEECSSGGGCCSHHHHH--------TTCCEEEEEEETTCHHHH-HTH------HHHHHHHTTCCSCSCCEEEEEEE
T ss_pred EEEEEeCCCchhhhhhhHHHh--------ccCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhcCcCCCcEEEEEE
Confidence 456779999654433322211 135789999999875432 111 112233332 2268999
Q ss_pred cCCCCChh-HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 104 KIDLVTET-ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 104 K~D~~~~~-~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+|+.+.+ ..+...++.+..+ .+++.++. .......++
T Consensus 130 K~Dl~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 130 KIDKENREVDRNEGLKFARKHS--MLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp CTTSSSCCSCHHHHHHHHHHTT--CEEEECCTTTCTTHHHHH
T ss_pred CCcCcccccCHHHHHHHHHHcC--CEEEEecCCCCCCHHHHH
Confidence 99985422 1234455555443 56776653 233444443
No 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.55 E-value=0.52 Score=37.45 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=38.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHH--H-HhhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVE--Q-VAYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~--Q-i~~Ad~ivlnK~D 106 (284)
.+..+++++|......+.. ..+ -..+.++.|+|+.+.... .+.. .++ ..+.. . -...=++|.||+|
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~-----~~~---~~~d~~i~v~D~~~~~s~-~~~~-~~~-~~~~~~~~~~~~piilv~NK~D 137 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWK-----NYL---PAINGIVFLVDCADHERL-LESK-EEL-DSLMTDETIANVPILILGNKID 137 (198)
T ss_dssp EEEEEEEECC----CCGGG-----GGG---GGCSEEEEEEETTCGGGH-HHHH-HHH-HHHHTCGGGTTSCEEEEEECTT
T ss_pred EEEEEEECCCcHhhHHHHH-----HHH---hcCCEEEEEEECCCHHHH-HHHH-HHH-HHHHhCcccCCCcEEEEEECCC
Confidence 4556778888544332111 111 246789999999774321 1100 011 01111 0 1223478889999
Q ss_pred CCChhHHHHHHHHHH
Q 023301 107 LVTETELGSLTERIK 121 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~ 121 (284)
+.+....+++++.++
T Consensus 138 l~~~~~~~~~~~~~~ 152 (198)
T 1f6b_A 138 RPEAISEERLREMFG 152 (198)
T ss_dssp STTCCCHHHHHHHHT
T ss_pred ccccCCHHHHHHHhC
Confidence 975333445555444
No 84
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.48 E-value=0.46 Score=40.06 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=36.7
Q ss_pred eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHh
Q 023301 60 VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHI 123 (284)
Q Consensus 60 ~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~ 123 (284)
-..+.|+.|+|++....... + .+. +. ...-++|+||+|+++.+..+...+.+++.
T Consensus 20 ~~~D~vl~VvDar~P~~~~~---~-~l~--ll---~k~~iivlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 20 RLVNTVVEVRDARAPFATSA---Y-GVD--FS---RKETIILLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp TTCSEEEEEEETTSTTTTSC---T-TSC--CT---TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred hhCCEEEEEeeCCCCCcCcC---h-HHH--hc---CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence 36788999999987543211 1 111 11 45668999999999987766666666654
No 85
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=89.43 E-value=0.27 Score=48.04 Aligned_cols=74 Identities=14% Similarity=0.282 Sum_probs=43.6
Q ss_pred CCCEEEEecCCCCC------cHHH---HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---h
Q 023301 29 QFDHIVIETTGLAK------PAPV---IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---Y 96 (284)
Q Consensus 29 ~~d~iiIE~sG~a~------p~~i---~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~ 96 (284)
.++.+||.++|+.. |..+ +..+.. ..+. -..+.+++|+|+...... .+ . ..+..++. .
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~-~yi~--~~aDlIL~VVDAs~~~~~----~d--~-l~ll~~L~~~g~ 218 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLM-QFVT--KENCLILAVSPANSDLAN----SD--A-LKIAKEVDPQGQ 218 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHH-HHHT--STTEEEEEEEETTSCSSS----CH--H-HHHHHHHCTTCS
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHH-HHHh--cCCcEEEEEEcCCCCcch----hH--H-HHHHHHHHhcCC
Confidence 46789999999988 4322 222211 1221 134568999999863211 00 0 12345554 3
Q ss_pred cCEEEEccCCCCChhH
Q 023301 97 ADRIILNKIDLVTETE 112 (284)
Q Consensus 97 Ad~ivlnK~D~~~~~~ 112 (284)
.-++|+||+|+++...
T Consensus 219 pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 219 RTIGVITKLDLMDEGT 234 (772)
T ss_dssp SEEEEEECTTSSCTTC
T ss_pred CEEEEEeCcccCCcch
Confidence 5689999999987544
No 86
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.42 E-value=0.078 Score=41.86 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=28.1
Q ss_pred CCCceeeeeeCc-hH-HHHHHHHHHhhcCCCCEEEEecCCCCCcHHHH
Q 023301 2 VNNGCLCCTVRG-DL-VKMLLQLAKKKQGQFDHIVIETTGLAKPAPVI 47 (284)
Q Consensus 2 L~~GCiCCs~~~-dl-~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~ 47 (284)
.++||.||..+. ++ .+.+.+++.. . .+|+||||..|- .|.+.+
T Consensus 69 ~s~~~~~~~~~~~~~~~~~~~~ll~~-~-~~D~vlVEg~~~-~~~pki 113 (169)
T 1xjc_A 69 EGDGLLQLHLRRPLWRLDDVLALYAP-L-RLDLVLVEGYKQ-ERHPKV 113 (169)
T ss_dssp EETTEEEEEECCSCCCHHHHHHHHGG-G-CCSEEEEECCTT-SCSCEE
T ss_pred ccCCEEEEEecccccchHHHHHHHHh-c-CCCEEEEeCCCC-CCCCEE
Confidence 468899997731 22 2345566662 3 899999999995 444433
No 87
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.34 E-value=0.36 Score=37.09 Aligned_cols=100 Identities=13% Similarity=0.135 Sum_probs=51.0
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~ 107 (284)
...+++++|......+..... -..+.++.|+|+...... .+.. .++ ..+..+.. ..=+||+||+|+
T Consensus 58 ~~~~~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~~piilv~nK~Dl 126 (181)
T 2fn4_A 58 RLDILDTAGQEEFGAMREQYM--------RAGHGFLLVFAINDRQSF-NEVG-KLF-TQILRVKDRDDFPVVLVGNKADL 126 (181)
T ss_dssp EEEEEECCCTTTTSCCHHHHH--------HHCSEEEEEEETTCHHHH-HHHH-HHH-HHHHHHHTSSCCCEEEEEECGGG
T ss_pred EEEEEECCCchhhHHHHHHHH--------hhCCEEEEEEeCCCHHHH-HHHH-HHH-HHHHHhcCCCCCCEEEEEECccc
Confidence 456789999766544333221 135678999999875432 1110 011 11112221 233788899998
Q ss_pred CChhHH--HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTETEL--GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~~--~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+..++ +...++.+.. ..+++.++. .......++
T Consensus 127 ~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 127 ESQRQVPRSEASAFGASH--HVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp GGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHH
T ss_pred ccccccCHHHHHHHHHHc--CCeEEEecCCCCCCHHHHH
Confidence 654322 3333333332 457776653 233444443
No 88
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.24 E-value=1.1 Score=35.23 Aligned_cols=101 Identities=15% Similarity=0.229 Sum_probs=53.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D 106 (284)
....+++++|......+..... -..+.+|.|+|+.+.... .+. ..++ . ...+.. ..=+||+||+|
T Consensus 75 ~~l~l~Dt~G~~~~~~~~~~~~--------~~~d~iilV~D~~~~~s~-~~~-~~~~-~-~i~~~~~~~~piilV~NK~D 142 (192)
T 2il1_A 75 IRLQIWDTAGQERFNSITSAYY--------RSAKGIILVYDITKKETF-DDL-PKWM-K-MIDKYASEDAELLLVGNKLD 142 (192)
T ss_dssp EEEEEEEECCSGGGHHHHHHHH--------HHCSEEEEEEETTCHHHH-HTH-HHHH-H-HHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEeCCCcHHHHHHHHHHh--------cCCCEEEEEEECcCHHHH-HHH-HHHH-H-HHHHhcCCCCcEEEEEECcc
Confidence 3567889999766555433221 245789999999875432 211 0010 1 122222 22378889999
Q ss_pred CCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 107 LVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+..+ .+..+++.+.+ ...+++.++. .......++
T Consensus 143 l~~~~~v~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 143 CETDREITRQQGEKFAQQI-TGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp GGGGCCSCHHHHHHHHHTS-TTCEEEECBTTTTBSHHHHH
T ss_pred cccccccCHHHHHHHHHhc-CCCeEEEEeCCCCCCHHHHH
Confidence 965322 23344444432 3466776653 233344443
No 89
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.19 E-value=1.1 Score=33.81 Aligned_cols=86 Identities=12% Similarity=-0.010 Sum_probs=39.5
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-------hcCEEEEc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-------YADRIILN 103 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-------~Ad~ivln 103 (284)
...+++++|......+.... .-..+.++.|+|..+.... .+. .....++. ..=++|.|
T Consensus 50 ~~~i~D~~g~~~~~~~~~~~--------~~~~~~~i~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~~p~ilv~n 114 (166)
T 3q72_A 50 SLMVYDIWEQDGGRWLPGHC--------MAMGDAYVIVYSVTDKGSF-EKA------SELRVQLRRARQTDDVPIILVGN 114 (166)
T ss_dssp EEEEEECC-----------------------CCEEEEEEETTCHHHH-HHH------HHHHHHHHHCC---CCCEEEEEE
T ss_pred EEEEEECCCCccchhhhhhh--------hhhCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCCCEEEEEe
Confidence 34677888876654332221 1245778999998865432 211 11222332 23478889
Q ss_pred cCCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 104 KIDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 104 K~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
|+|+.+..+ .+..++..+..+ +++++++
T Consensus 115 K~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~S 144 (166)
T 3q72_A 115 KSDLVRSREVSVDEGRACAVVFD--CKFIETS 144 (166)
T ss_dssp CTTCCSSCCSCHHHHHHHHHHTT--CEEEECB
T ss_pred ccccccccccCHHHHHHHHHHhC--CcEEEec
Confidence 999975432 223333333333 5777665
No 90
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.10 E-value=1.8 Score=33.58 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=53.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-----hhcCEEEEccC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-----AYADRIILNKI 105 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-----~~Ad~ivlnK~ 105 (284)
...+++++|......+..... -..+.+|.|+|+......-....-..+ .....++ ...=+||.||+
T Consensus 75 ~~~i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~ 145 (198)
T 3t1o_A 75 RFHLYTVPGQVFYNASRKLIL--------RGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKR 145 (198)
T ss_dssp EEEEEECCSCCSCSHHHHHHT--------TTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECT
T ss_pred EEEEEeCCChHHHHHHHHHHH--------hcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEch
Confidence 356889999877655444322 135678999999842111000000000 0112222 23346777999
Q ss_pred CCCChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 106 DLVTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 106 D~~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+.+....+.+++.++..+- .++++++. .......++
T Consensus 146 Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~ 183 (198)
T 3t1o_A 146 DLPDALPVEMVRAVVDPEGK-FPVLEAVATEGKGVFETL 183 (198)
T ss_dssp TSTTCCCHHHHHHHHCTTCC-SCEEECBGGGTBTHHHHH
T ss_pred hcccccCHHHHHHHHHhcCC-ceEEEEecCCCcCHHHHH
Confidence 99766555666666654431 26666653 233444444
No 91
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.04 E-value=1.3 Score=33.40 Aligned_cols=74 Identities=23% Similarity=0.312 Sum_probs=42.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-------hhcCEEEE
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-------AYADRIIL 102 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-------~~Ad~ivl 102 (284)
....+++++|......+..... -..+.++.|+|+.+.... .+. .....++ ...=++|+
T Consensus 44 ~~~~i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~~piilv~ 108 (164)
T 1r8s_A 44 ISFTVWDVGGQDKIRPLWRHYF--------QNTQGLIFVVDSNDRERV-NEA------REELMRMLAEDELRDAVLLVFA 108 (164)
T ss_dssp CEEEEEECCCCGGGHHHHHHHT--------TTCSEEEEEEETTCGGGH-HHH------HHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEEEEEEcCCChhhHHHHHHHh--------ccCCEEEEEEECCCHHHH-HHH------HHHHHHHHhchhhcCCeEEEEE
Confidence 4567889999876555443321 135678999999774321 110 0111222 22347888
Q ss_pred ccCCCCChhHHHHHHH
Q 023301 103 NKIDLVTETELGSLTE 118 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~ 118 (284)
||+|+.+....+.+.+
T Consensus 109 nK~Dl~~~~~~~~~~~ 124 (164)
T 1r8s_A 109 NKQDLPNAMNAAEITD 124 (164)
T ss_dssp ECTTSTTCCCHHHHHH
T ss_pred ECcCCcCCCCHHHHHH
Confidence 9999976543344433
No 92
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.96 E-value=0.2 Score=41.85 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=40.2
Q ss_pred CCEEEEecCCCCCcHH----HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-----hhcCEE
Q 023301 30 FDHIVIETTGLAKPAP----VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-----AYADRI 100 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~----i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-----~~Ad~i 100 (284)
.+..||+|+|..++.. +.+.+.. ......-..+.+|.|+|+.++..... .+.. ...++ ...-++
T Consensus 71 ~~i~iiDTpG~~~~~~~~~~~~~~i~~-~~~~~~~~~d~il~V~d~~~~~~~~~-----~~~~-~l~~~~~~~~~~~~i~ 143 (260)
T 2xtp_A 71 REIVIIDTPDMFSWKDHCEALYKEVQR-CYLLSAPGPHVLLLVTQLGRYTSQDQ-----QAAQ-RVKEIFGEDAMGHTIV 143 (260)
T ss_dssp EEEEEEECCGGGGSSCCCHHHHHHHHH-HHHHHTTCCSEEEEEEETTCCCHHHH-----HHHH-HHHHHHCGGGGGGEEE
T ss_pred CEEEEEECcCCCCCCCCHHHHHHHHHH-HHHhcCCCCcEEEEEEeCCCCCHHHH-----HHHH-HHHHHhCchhhccEEE
Confidence 3578999999887531 1111110 00001124678999999987432211 1111 12222 456788
Q ss_pred EEc-cCCCCCh
Q 023301 101 ILN-KIDLVTE 110 (284)
Q Consensus 101 vln-K~D~~~~ 110 (284)
|+| |+|+.+.
T Consensus 144 vv~nK~Dl~~~ 154 (260)
T 2xtp_A 144 LFTHKEDLNGG 154 (260)
T ss_dssp EEECGGGGTTC
T ss_pred EEEcccccCCc
Confidence 888 9999753
No 93
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.96 E-value=2 Score=33.99 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=52.6
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK 104 (284)
...|++++|......+..... -..+.+|.|+|+.+.... .+. .....++. ..=+||.||
T Consensus 79 ~l~i~Dt~G~~~~~~~~~~~~--------~~~d~iilv~D~~~~~s~-~~~------~~~~~~i~~~~~~~~piilv~NK 143 (201)
T 2hup_A 79 KLQIWDTAGQERFRTITQSYY--------RSANGAILAYDITKRSSF-LSV------PHWIEDVRKYAGSNIVQLLIGNK 143 (201)
T ss_dssp EEEEECCTTCGGGHHHHHHHH--------TTCSEEEEEEETTBHHHH-HTH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEECCCcHhHHHHHHHHH--------hhCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCCEEEEEEC
Confidence 556788899766554433321 135779999999875432 211 11223332 223778899
Q ss_pred CCCCChh--HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTET--ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~--~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+.. ..+.++++.+..+ ..++++++. .......++
T Consensus 144 ~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 144 SDLSELREVSLAEAQSLAEHYD-ILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp TTCGGGCCSCHHHHHHHHHHTT-CSEEEECBTTTTBSHHHHH
T ss_pred CccccccccCHHHHHHHHHHcC-CCEEEEEeCCCCCCHHHHH
Confidence 9996532 2344555555443 126676653 233444444
No 94
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.93 E-value=0.71 Score=36.95 Aligned_cols=97 Identities=15% Similarity=0.124 Sum_probs=50.9
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-------hcCEEEE
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-------YADRIIL 102 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-------~Ad~ivl 102 (284)
....|++++|......+.... + -..+.+|.|+|+...... .+. ..+..++. ..=+||+
T Consensus 84 ~~l~l~Dt~G~~~~~~~~~~~-----~---~~~d~iilV~D~~~~~s~-~~~------~~~l~~i~~~~~~~~~piilV~ 148 (217)
T 2f7s_A 84 VHLQLWDTAGQERFRSLTTAF-----F---RDAMGFLLMFDLTSQQSF-LNV------RNWMSQLQANAYCENPDIVLIG 148 (217)
T ss_dssp EEEEEEEEESHHHHHHHHHHH-----H---TTCCEEEEEEETTCHHHH-HHH------HHHHHTCCCCCTTTCCEEEEEE
T ss_pred EEEEEEECCCcHhHHhHHHHH-----h---cCCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhcCcCCCCEEEEE
Confidence 446778888854333322221 1 145789999999774432 110 11223332 2237888
Q ss_pred ccCCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 103 NKIDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 103 nK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
||+|+.+..+ .+.++++.+..+ .+++.++. .......++
T Consensus 149 NK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~ 190 (217)
T 2f7s_A 149 NKADLPDQREVNERQARELADKYG--IPYFETSAATGQNVEKAV 190 (217)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHTT--CCEEEEBTTTTBTHHHHH
T ss_pred ECCccccccccCHHHHHHHHHHCC--CcEEEEECCCCCCHHHHH
Confidence 9999965322 344455555443 56776653 233444444
No 95
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=88.89 E-value=0.95 Score=34.21 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=44.4
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivlnK 104 (284)
...+++++|......+... . .-..+.++.|+|+.+.... .+. .....++ ...=++|+||
T Consensus 53 ~~~l~D~~G~~~~~~~~~~-----~---~~~~d~~i~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~piilv~nK 117 (170)
T 1g16_A 53 KLQIWDTAGQERFRTITTA-----Y---YRGAMGIILVYDITDERTF-TNI------KQWFKTVNEHANDEAQLLLVGNK 117 (170)
T ss_dssp EEEEECCTTGGGTSCCCHH-----H---HTTEEEEEEEEETTCHHHH-HTH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCChhhhhhHHH-----H---hccCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCcEEEEEEC
Confidence 4567788885432221111 1 1245779999999875432 111 1112222 2233788899
Q ss_pred CCCCChh-HHHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTET-ELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~-~~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+.+.. ..+...++.+..+ .+++.++
T Consensus 118 ~Dl~~~~~~~~~~~~~~~~~~--~~~~~~S 145 (170)
T 1g16_A 118 SDMETRVVTADQGEALAKELG--IPFIESS 145 (170)
T ss_dssp TTCTTCCSCHHHHHHHHHHHT--CCEEECB
T ss_pred ccCCcCccCHHHHHHHHHHcC--CeEEEEE
Confidence 9984321 2234444445443 4666665
No 96
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.77 E-value=1.6 Score=33.92 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=53.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh----hcCEEEEccC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA----YADRIILNKI 105 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~----~Ad~ivlnK~ 105 (284)
....|++++|......+..... -..+.++.|+|+.+.... .+. ..+..++. ..=++|+||+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~D~~~~~s~-~~~------~~~~~~i~~~~~~piilv~NK~ 157 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYY--------RGATCAIVVFDISNSNTL-DRA------KTWVNQLKISSNYIIILVANKI 157 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHH--------TTCSEEEEEEETTCHHHH-HHH------HHHHHHHHHHSCCEEEEEEECT
T ss_pred eEEEEEECCCcHHHHHHHHHHh--------cCCCEEEEEEECCCHHHH-HHH------HHHHHHHHhhCCCcEEEEEECC
Confidence 6788999999655443332221 134679999999875432 111 11223332 2348899999
Q ss_pred CCCC-hhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 106 DLVT-ETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 106 D~~~-~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|... ....+.++++++..+ .+++.++. .......++
T Consensus 158 D~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~ 195 (208)
T 3clv_A 158 DKNKFQVDILEVQKYAQDNN--LLFIQTSAKTGTNIKNIF 195 (208)
T ss_dssp TCC-CCSCHHHHHHHHHHTT--CEEEEECTTTCTTHHHHH
T ss_pred CcccccCCHHHHHHHHHHcC--CcEEEEecCCCCCHHHHH
Confidence 9321 223456666666543 46776653 233344443
No 97
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=88.77 E-value=0.54 Score=37.04 Aligned_cols=80 Identities=15% Similarity=0.220 Sum_probs=40.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D 106 (284)
....+++++|......+.. ..+ -..+.++.|+|+.+.... .+.. .++ ..+... -...=++|.||+|
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~-----~~~---~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~~piilv~NK~D 135 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWK-----DYF---PEVNGIVFLVDAADPERF-DEAR-VEL-DALFNIAELKDVPFVILGNKID 135 (190)
T ss_dssp EEEEEEECCCSGGGTTSGG-----GGC---TTCCEEEEEEETTCGGGH-HHHH-HHH-HHHHTCGGGTTCCEEEEEECTT
T ss_pred EEEEEEECCCCHHHHHHHH-----HHH---hcCCEEEEEEECCChHHH-HHHH-HHH-HHHHcchhhcCCCEEEEEECCC
Confidence 3456778888765433211 111 145789999999875321 1100 001 011111 1223477889999
Q ss_pred CCChhHHHHHHHHH
Q 023301 107 LVTETELGSLTERI 120 (284)
Q Consensus 107 ~~~~~~~~~~~~~l 120 (284)
+.+....+++.+.+
T Consensus 136 l~~~~~~~~~~~~~ 149 (190)
T 1m2o_B 136 APNAVSEAELRSAL 149 (190)
T ss_dssp STTCCCHHHHHHHT
T ss_pred CcCCCCHHHHHHHh
Confidence 97633344444443
No 98
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=88.74 E-value=0.63 Score=40.55 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=48.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh------cCEEEE
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY------ADRIIL 102 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~------Ad~ivl 102 (284)
.....|++++|-.....+.... + -..+.+|.|+|+...... .. +...+...+.. .=+||+
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~-----~---~~ad~vilV~D~~~~~s~-~~-----~~~~~~~~~~~~~~~~~piilV~ 273 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHY-----F---QNTQGLIFVVDSNDRERV-NE-----AREELMRMLAEDELRDAVLLVFA 273 (329)
T ss_dssp TEEEEEEECC-----CCSHHHH-----H---TTEEEEEEEEETTCSSSH-HH-----HHHHHHHHHTCGGGTTCEEEEEE
T ss_pred cEEEEEEECCCCHhHHHHHHHH-----h---ccCCEEEEEEECCchHHH-HH-----HHHHHHHHHhhhccCCCeEEEEE
Confidence 3456788999944332222111 1 146779999999653221 11 00111222222 237888
Q ss_pred ccCCCCChhHHHHHHHHHHHhC---CCCceeeecc-CCCChhhhh
Q 023301 103 NKIDLVTETELGSLTERIKHIN---AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l~~~n---p~a~i~~~~~-g~v~~~~l~ 143 (284)
||+|+.+....+.+.+.+.... ...+++.++. ....++.++
T Consensus 274 NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~ 318 (329)
T 3o47_A 274 NKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 318 (329)
T ss_dssp ECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred ECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHH
Confidence 9999987655556655544222 2334665543 233444443
No 99
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=88.68 E-value=0.63 Score=39.69 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=38.9
Q ss_pred eeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 60 VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 60 ~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
-..+.|+.|+|++...... +...+++ ...-++|+||+|+++.+..+...++.++.+ .+++..+
T Consensus 22 ~~aDvVl~VvDAr~p~~~~---------~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g--~~~i~iS 86 (282)
T 1puj_A 22 KLIDIVYELVDARIPMSSR---------NPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQG--IRSLSIN 86 (282)
T ss_dssp GGCSEEEEEEETTSTTTTS---------CHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTT--CCEEECC
T ss_pred hhCCEEEEEEeCCCCCccC---------CHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcC--CcEEEEE
Confidence 4678899999998754321 1112232 234589999999998766666555555332 3555443
No 100
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=88.52 E-value=1.6 Score=36.68 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=37.0
Q ss_pred eeceEEEEEcccc-hHHhhhhcCCccchHHHHHHHh--hcCEEEEccCCCCChhHHHHHHHHHHHhC--CCCceeeec
Q 023301 61 KLDGVITLVDSKH-AMQHLNEVKPRFVVNEAVEQVA--YADRIILNKIDLVTETELGSLTERIKHIN--AMAPVKLAK 133 (284)
Q Consensus 61 ~l~~vv~vvD~~~-~~~~l~~~~~~~~~~~~~~Qi~--~Ad~ivlnK~D~~~~~~~~~~~~~l~~~n--p~a~i~~~~ 133 (284)
.++.++.+||+.. ...... ..+..++. ..=++|+||+|+.+.+++...++.+++.. ...+++..+
T Consensus 115 r~~~~l~~i~~~~~~~~~~d--------~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~s 184 (274)
T 3t5d_A 115 RVQCCLYFIAPSGHGLKPLD--------IEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP 184 (274)
T ss_dssp CCCEEEEEECSCCSSCCHHH--------HHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-
T ss_pred ceeEEEEEecCCCCCCCHHH--------HHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCC
Confidence 3557888887755 111110 12234443 45678889999998888776655555432 234555443
No 101
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.39 E-value=1.1 Score=34.52 Aligned_cols=97 Identities=9% Similarity=0.123 Sum_probs=44.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivln 103 (284)
....+++++|...... +.. ..+ -..+.++.|+|+.+... +.+. .....++. ..=+||+|
T Consensus 57 ~~~~l~Dt~G~~~~~~----~~~-~~~---~~~d~~i~v~d~~~~~s-~~~~------~~~~~~i~~~~~~~~piilv~n 121 (183)
T 2fu5_C 57 IKLQIWDTAGQERFRT----ITT-AYY---RGAMGIMLVYDITNEKS-FDNI------RNWIRNIEEHASADVEKMILGN 121 (183)
T ss_dssp EEEEEEEC-------------CC-TTT---TTCSEEEEEEETTCHHH-HHHH------HHHHHHHHHHSCTTCEEEEEEE
T ss_pred EEEEEEcCCCChhhhh----hHH-HHH---hcCCEEEEEEECcCHHH-HHHH------HHHHHHHHHhcCCCCCEEEEEE
Confidence 4567889999654332 111 111 24678999999987543 1211 11122222 23378889
Q ss_pred cCCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 104 KIDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 104 K~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+|+.+..+ .+.++++.+..+ .++++++. .......++
T Consensus 122 K~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 122 KCDVNDKRQVSKERGEKLALDYG--IKFMETSAKANINVENAF 162 (183)
T ss_dssp C--CCSCCCSCHHHHHHHHHHHT--CEEEECCC---CCHHHHH
T ss_pred CccCCccCcCCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 999965322 344555555554 56776653 233444444
No 102
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=88.35 E-value=0.31 Score=42.93 Aligned_cols=73 Identities=12% Similarity=0.231 Sum_probs=38.3
Q ss_pred CCCEEEEecCCCCC------cHHHHH---HhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---h
Q 023301 29 QFDHIVIETTGLAK------PAPVIE---TFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---Y 96 (284)
Q Consensus 29 ~~d~iiIE~sG~a~------p~~i~~---~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~ 96 (284)
.++.+||+|+|+.. |..+.+ .+.. ..+.. .-+.+++|+|+..-.. +. .. ..+.+++. .
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~iiL~v~~a~~~~~---~~---~~-~~i~~~~~~~~~ 198 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLM-QFVTK--ENCLILAVSPANSDLA---NS---DA-LKVAKEVDPQGQ 198 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHH-HHHTS--TTEEEEEEEETTSCGG---GC---HH-HHHHHHHCTTCT
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHH-HHHcC--CCeEEEEEecCCCccc---hh---HH-HHHHHHhCcCCC
Confidence 47899999999976 544322 2211 11111 1223566777754211 10 00 11233332 2
Q ss_pred cCEEEEccCCCCChh
Q 023301 97 ADRIILNKIDLVTET 111 (284)
Q Consensus 97 Ad~ivlnK~D~~~~~ 111 (284)
.-++|+||+|+.+..
T Consensus 199 ~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 199 RTIGVITKLDLMDEG 213 (353)
T ss_dssp TEEEEEECGGGSCTT
T ss_pred ceEEEeccccccCcc
Confidence 339999999998653
No 103
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.33 E-value=1 Score=35.22 Aligned_cols=96 Identities=13% Similarity=0.105 Sum_probs=48.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK 104 (284)
...|++++|......+... . .-..+.+|.|+|+.+.... .+. .....++. ..=+||+||
T Consensus 71 ~~~i~Dt~G~~~~~~~~~~-----~---~~~~d~ii~v~d~~~~~s~-~~~------~~~l~~i~~~~~~~~piilv~nK 135 (191)
T 2a5j_A 71 KLQIWDTAGQESFRSITRS-----Y---YRGAAGALLVYDITRRETF-NHL------TSWLEDARQHSSSNMVIMLIGNK 135 (191)
T ss_dssp EEEEECCTTGGGTSCCCHH-----H---HTTCSEEEEEEETTCHHHH-HTH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEECCCchhhhhhHHH-----H---hccCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCCEEEEEEC
Confidence 4567788885432221111 1 1146789999999875432 211 11222222 223788899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+..+ .+..+++.+..+ .++++++. .......++
T Consensus 136 ~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 175 (191)
T 2a5j_A 136 SDLESRRDVKREEGEAFAREHG--LIFMETSAKTACNVEEAF 175 (191)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHT--CEEEEECTTTCTTHHHHH
T ss_pred cccCCccccCHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 99965322 234445555443 56666653 233444443
No 104
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.32 E-value=2.9 Score=31.62 Aligned_cols=96 Identities=11% Similarity=-0.012 Sum_probs=45.8
Q ss_pred CEEEEecCCCCCc--HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-------hcCEEE
Q 023301 31 DHIVIETTGLAKP--APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-------YADRII 101 (284)
Q Consensus 31 d~iiIE~sG~a~p--~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-------~Ad~iv 101 (284)
...+++++|.... ..+.... + -..+.++.|+|..+.... .+. ..+..++. ..=+||
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~-----~---~~~~~~i~v~d~~~~~s~-~~~------~~~~~~l~~~~~~~~~piilv 117 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESC-----L---QGGSAYVIVYSIADRGSF-ESA------SELRIQLRRTHQADHVPIILV 117 (175)
T ss_dssp EEEEECCC-------CHHHHHT-----T---TSCSEEEEEEETTCHHHH-HHH------HHHHHHHHHCC----CCEEEE
T ss_pred EEEEEecCCCCccchhhhHHhh-----c---ccCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhhccCCCCEEEE
Confidence 4567888887652 2222111 1 124678999998764432 111 11222222 234788
Q ss_pred EccCCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 102 LNKIDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 102 lnK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+||+|+.+..+ .+..+.+.+..+ .++++++. .......++
T Consensus 118 ~NK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 118 GNKADLARCREVSVEEGRACAVVFD--CKFIETSATLQHNVAELF 160 (175)
T ss_dssp EECTTCTTTCCSCHHHHHHHHHHHT--SEEEECBTTTTBSHHHHH
T ss_pred EEChhhccccccCHHHHHHHHHHcC--CeEEEEecCCCCCHHHHH
Confidence 89999975422 233344444443 56666653 233444443
No 105
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.26 E-value=0.61 Score=36.00 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=38.5
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-------hcCEEEE
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-------YADRIIL 102 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-------~Ad~ivl 102 (284)
....+++++|......+... . .-..+.++.|+|+...... .+. .....++. ..-++|+
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~-----~---~~~~d~ii~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~~piilv~ 126 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRC-----Y---YADTAAVIFVVDSTDKDRM-STA------SKELHLMLQEEELQDAALLVFA 126 (183)
T ss_dssp EEEEEEEEC----CCTTGGG-----T---TTTEEEEEEEEETTCTTTH-HHH------HHHHHHHTTSSTTSSCEEEEEE
T ss_pred EEEEEEECCCCHhHHHHHHH-----H---hccCCEEEEEEECCCHHHH-HHH------HHHHHHHHcChhhCCCeEEEEE
Confidence 45568899998654332111 1 1256789999998764211 110 01112221 2347888
Q ss_pred ccCCCCChhHHHHHHHHH
Q 023301 103 NKIDLVTETELGSLTERI 120 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l 120 (284)
||+|+.+....+.+.+.+
T Consensus 127 nK~Dl~~~~~~~~i~~~~ 144 (183)
T 1moz_A 127 NKQDQPGALSASEVSKEL 144 (183)
T ss_dssp ECTTSTTCCCHHHHHHHT
T ss_pred ECCCCCCCCCHHHHHHHh
Confidence 999997654444454443
No 106
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=88.12 E-value=0.27 Score=42.62 Aligned_cols=118 Identities=19% Similarity=0.212 Sum_probs=56.7
Q ss_pred ceeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhccccccc--ceeeeceEEEEEcccchHHhhhhcC
Q 023301 5 GCLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVS--QYVKLDGVITLVDSKHAMQHLNEVK 82 (284)
Q Consensus 5 GCiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~--~~~~l~~vv~vvD~~~~~~~l~~~~ 82 (284)
|=+=|.+++.|... .....--|+|.+++.+-. ...|.+.+-....+. ..-.+|.++.|+|+....-... .-
T Consensus 34 ~~~~~~~rg~~~~~-----~~~~~vGD~V~~~~~~~~-~~~i~~i~~R~~~l~R~~~anvD~v~~V~~~~~p~~~~~-~i 106 (307)
T 1t9h_A 34 KVIQCRGRGIFRKN-----KITPLVGDYVVYQAENDK-EGYLMEIKERTNELIRPPICNVDQAVLVFSAVQPSFSTA-LL 106 (307)
T ss_dssp EEEEEESCSSCCSC-----CCCCCBTCEEEEECCTTS-CEEEEEECCCSCEETTTTEECCCEEEEEEESTTTTCCHH-HH
T ss_pred cEEEEEEccccccc-----CCCCCCCeEEEEEEcCCC-ceEEEEEcchhhhhhHHHHHhCCEEEEEEeCCCCCCCHH-HH
Confidence 34457777755310 000123599999865411 111111111111111 2458899999999985332111 00
Q ss_pred CccchHHHHHHHhhcCEEEEccCCCCChhH----HHHHHHHHHHhCCCCceeeec
Q 023301 83 PRFVVNEAVEQVAYADRIILNKIDLVTETE----LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 83 ~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~----~~~~~~~l~~~np~a~i~~~~ 133 (284)
++++. ....-...=+||+||+|++++++ ++.+.+..+.+. .+++.++
T Consensus 107 ~r~L~--~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g--~~v~~~s 157 (307)
T 1t9h_A 107 DRFLV--LVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG--YDVYLTS 157 (307)
T ss_dssp HHHHH--HHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT--CCEEECC
T ss_pred HHHHH--HHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC--CeEEEEe
Confidence 01100 01111223488999999998754 445555544443 4666543
No 107
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.84 E-value=0.78 Score=35.78 Aligned_cols=90 Identities=11% Similarity=0.181 Sum_probs=45.4
Q ss_pred CEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCC
Q 023301 31 DHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKID 106 (284)
Q Consensus 31 d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D 106 (284)
...+++++|..... .+.... + -..+.+|.|+|+.+.... .+.. .++ ..+...+ ...=+||+||+|
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~~~-----~---~~~d~iilv~D~~~~~s~-~~~~-~~~-~~i~~~~~~~~~piilv~nK~D 138 (189)
T 1z06_A 70 KIQLWDTAGQERFRKSMVQHY-----Y---RNVHAVVFVYDMTNMASF-HSLP-AWI-EECKQHLLANDIPRILVGNKCD 138 (189)
T ss_dssp EEEEEECCCSHHHHTTTHHHH-----H---TTCCEEEEEEETTCHHHH-HTHH-HHH-HHHHHHCCCSCCCEEEEEECTT
T ss_pred EEEEEECCCchhhhhhhhHHH-----h---cCCCEEEEEEECcCHHHH-HHHH-HHH-HHHHHhcCCCCCCEEEEEECcc
Confidence 45778899954322 222111 1 146789999999875432 1110 011 1122222 123478889999
Q ss_pred CCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 107 LVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 107 ~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+.+..+ .+..+++.+.. ..+++.++
T Consensus 139 l~~~~~v~~~~~~~~~~~~--~~~~~~~S 165 (189)
T 1z06_A 139 LRSAIQVPTDLAQKFADTH--SMPLFETS 165 (189)
T ss_dssp CGGGCCSCHHHHHHHHHHT--TCCEEECC
T ss_pred ccccceeCHHHHHHHHHHc--CCEEEEEe
Confidence 965322 23334444433 25666655
No 108
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=87.80 E-value=1.5 Score=40.98 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=45.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKI 105 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~ 105 (284)
...+.||.|+|..+....... .+ -..+.+|.|+|+........ ..+..++ ...-++|+||+
T Consensus 81 ~~~i~liDTPG~~df~~~~~~-----~l---~~aD~allVvDa~~g~~~~t--------~~~~~~~~~~~iPiivviNK~ 144 (528)
T 3tr5_A 81 DYLINLLDTPGHADFTEDTYR-----TL---TAVDSALMVIDAAKGVEPRT--------IKLMEVCRLRHTPIMTFINKM 144 (528)
T ss_dssp TEEEEEECCCCSTTCCHHHHH-----GG---GGCSEEEEEEETTTCSCHHH--------HHHHHHHHTTTCCEEEEEECT
T ss_pred CEEEEEEECCCchhHHHHHHH-----HH---HhCCEEEEEEeCCCCCCHHH--------HHHHHHHHHcCCCEEEEEeCC
Confidence 456789999999886543222 12 24688999999987322100 1122333 34558999999
Q ss_pred CCCChhHHHHHHHHHHHh
Q 023301 106 DLVTETELGSLTERIKHI 123 (284)
Q Consensus 106 D~~~~~~~~~~~~~l~~~ 123 (284)
|+......+.+.+..+.+
T Consensus 145 Dl~~~~~~~~l~ei~~~l 162 (528)
T 3tr5_A 145 DRDTRPSIELLDEIESIL 162 (528)
T ss_dssp TSCCSCHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHhh
Confidence 997544333333333333
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.76 E-value=1.4 Score=34.01 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=45.1
Q ss_pred CEEEEecCCCCCcH-------HHHHHhcccccccc-eeeeceEEEEEcccchHHhhhhc---CCccchHHHHHH---Hhh
Q 023301 31 DHIVIETTGLAKPA-------PVIETFCTDELVSQ-YVKLDGVITLVDSKHAMQHLNEV---KPRFVVNEAVEQ---VAY 96 (284)
Q Consensus 31 d~iiIE~sG~a~p~-------~i~~~l~~~~~l~~-~~~l~~vv~vvD~~~~~~~l~~~---~~~~~~~~~~~Q---i~~ 96 (284)
...+++++|+.... +-+..+.. ..+.. .-.+..++.|+|+..+....... +.......+..+ ...
T Consensus 45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (190)
T 2cxx_A 45 NHKIIDMPGFGFMMGLPKEVQERIKDEIV-HFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDI 123 (190)
T ss_dssp TEEEEECCCBSCCTTSCHHHHHHHHHHHH-HHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTC
T ss_pred CEEEEECCCccccccCCHHHHHHHHHHHH-HHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCC
Confidence 46789999975431 11222211 11111 22345688999998875421110 000000011222 234
Q ss_pred cCEEEEccCCCCChhHHHHHHHHHHHhC
Q 023301 97 ADRIILNKIDLVTETELGSLTERIKHIN 124 (284)
Q Consensus 97 Ad~ivlnK~D~~~~~~~~~~~~~l~~~n 124 (284)
.-++|+||+|+.+.. .+...+..+.++
T Consensus 124 piilv~nK~Dl~~~~-~~~~~~~~~~~~ 150 (190)
T 2cxx_A 124 PTIVAVNKLDKIKNV-QEVINFLAEKFE 150 (190)
T ss_dssp CEEEEEECGGGCSCH-HHHHHHHHHHHT
T ss_pred ceEEEeehHhccCcH-HHHHHHHHHHhh
Confidence 568889999997754 233444444444
No 110
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=87.71 E-value=0.8 Score=36.65 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=45.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~ 107 (284)
....+++++|......+.... .-..+.+|.|+|+...... .+. ..++ ..+.... ...-+||+||+|+
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~-~~~-~~~~-~~~~~~~~~~~piilv~nK~Dl 129 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVY--------YIGASGAILFFDVTSRITC-QNL-ARWV-KEFQAVVGNEAPIVVCANKIDI 129 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHH--------HTTCSEEEEEEETTCHHHH-HTH-HHHH-HHHHHHHCSSSCEEEEEECTTC
T ss_pred EEEEEEecCCchhhchHHHHH--------hhcCCEEEEEEeCCCHHHH-HHH-HHHH-HHHHHhcCCCCCEEEEEECCCC
Confidence 457788999964432211111 1236779999999875432 111 0111 1111111 2345788899999
Q ss_pred CChhHH--HHHHHHHHHhCCCCceeeecc
Q 023301 108 VTETEL--GSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 108 ~~~~~~--~~~~~~l~~~np~a~i~~~~~ 134 (284)
.+..++ +...+..+ ....+++.++.
T Consensus 130 ~~~~~~~~~~~~~~~~--~~~~~~~~~Sa 156 (218)
T 4djt_A 130 KNRQKISKKLVMEVLK--GKNYEYFEISA 156 (218)
T ss_dssp C----CCHHHHHHHTT--TCCCEEEEEBT
T ss_pred ccccccCHHHHHHHHH--HcCCcEEEEec
Confidence 764332 22222222 23466777653
No 111
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=87.49 E-value=1.6 Score=33.50 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=50.1
Q ss_pred EEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCCCC
Q 023301 33 IVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDLVT 109 (284)
Q Consensus 33 iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~~~ 109 (284)
-+++++|......+.... .-..+.++.|+|+.+.... .... .+. ..+..... ..=++|+||+|+.+
T Consensus 69 ~i~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 69 DVLDTAGQEEFSAMREQY--------MRTGDGFLIVYSVTDKASF-EHVD-RFH-QLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp EEEECCSCGGGCSSHHHH--------HHHCSEEEEEEETTCHHHH-HTHH-HHH-HHHHHHHTSSCCCEEEEEECTTCST
T ss_pred EEEECCCchhhHHHHHHH--------HhcCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHhcCCCCCcEEEEEECCCchh
Confidence 358888865433322221 1136789999999875432 1110 011 11222222 13478889999865
Q ss_pred hh--HHHHHHHHHHHhCCCCceeeeccC--CCChhhhh
Q 023301 110 ET--ELGSLTERIKHINAMAPVKLAKYG--SVDMDFVL 143 (284)
Q Consensus 110 ~~--~~~~~~~~l~~~np~a~i~~~~~g--~v~~~~l~ 143 (284)
.. ..+..+++.+..+ +++++++.- ......++
T Consensus 138 ~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~~v~~l~ 173 (183)
T 3kkq_A 138 LRKVTRDQGKEMATKYN--IPYIETSAKDPPLNVDKTF 173 (183)
T ss_dssp TCCSCHHHHHHHHHHHT--CCEEEEBCSSSCBSHHHHH
T ss_pred ccCcCHHHHHHHHHHhC--CeEEEeccCCCCCCHHHHH
Confidence 22 2344555566555 667766532 33444443
No 112
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.33 E-value=2.4 Score=33.22 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=37.3
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivlnK 104 (284)
...|++++|......+..... -..+.+|.|+|+.+.... .+. ......+ ...=+||+||
T Consensus 78 ~l~i~Dt~G~~~~~~~~~~~~--------~~~d~iilv~d~~~~~s~-~~~------~~~~~~i~~~~~~~~piilv~NK 142 (199)
T 2p5s_A 78 VLQLWDTAGQERFRSIAKSYF--------RKADGVLLLYDVTCEKSF-LNI------REWVDMIEDAAHETVPIMLVGNK 142 (199)
T ss_dssp EEEEEECTTCTTCHHHHHHHH--------HHCSEEEEEEETTCHHHH-HTH------HHHHHHHHHHC---CCEEEEEEC
T ss_pred EEEEEECCCCcchhhhHHHHH--------hhCCEEEEEEECCChHHH-HHH------HHHHHHHHHhcCCCCCEEEEEEC
Confidence 356889999877655443321 135779999999875432 111 1112222 2344788899
Q ss_pred CCCC
Q 023301 105 IDLV 108 (284)
Q Consensus 105 ~D~~ 108 (284)
+|+.
T Consensus 143 ~Dl~ 146 (199)
T 2p5s_A 143 ADIR 146 (199)
T ss_dssp GGGH
T ss_pred cccc
Confidence 9985
No 113
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.23 E-value=3.5 Score=32.63 Aligned_cols=99 Identities=17% Similarity=0.174 Sum_probs=50.2
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~ 107 (284)
...+++++|......+... .+ -..+.+|.|+|+.+.... ... ..++ .. ..+.. ..=+||.||+|+
T Consensus 76 ~l~l~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~D~~~~~s~-~~~-~~~~-~~-i~~~~~~~~piilv~NK~Dl 143 (201)
T 2ew1_A 76 KLQIWDTAGQERFRSITQS-----YY---RSANALILTYDITCEESF-RCL-PEWL-RE-IEQYASNKVITVLVGNKIDL 143 (201)
T ss_dssp EEEEEEECCSGGGHHHHGG-----GS---TTCSEEEEEEETTCHHHH-HTH-HHHH-HH-HHHHSCTTCEEEEEEECGGG
T ss_pred EEEEEECCCcHHHHHHHHH-----HH---hcCCEEEEEEECCCHHHH-HHH-HHHH-HH-HHHhcCCCCCEEEEEECCCC
Confidence 4567789996554433221 11 246789999999875432 111 0111 11 11221 223678899998
Q ss_pred CChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+..+ .+..+++.+..+ .++++++. .......++
T Consensus 144 ~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~g~gv~~l~ 180 (201)
T 2ew1_A 144 AERREVSQQRAEEFSEAQD--MYYLETSAKESDNVEKLF 180 (201)
T ss_dssp GGGCSSCHHHHHHHHHHHT--CCEEECCTTTCTTHHHHH
T ss_pred ccccccCHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 64322 233444444443 56776653 234455544
No 114
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.04 E-value=1 Score=39.63 Aligned_cols=104 Identities=17% Similarity=0.183 Sum_probs=54.1
Q ss_pred CEEEEecCCCCCcH-----HHH-HHhcccccccceeeeceEEEEEcccchHHh-hhhcCCccchHHHHHHH-hhcCEEEE
Q 023301 31 DHIVIETTGLAKPA-----PVI-ETFCTDELVSQYVKLDGVITLVDSKHAMQH-LNEVKPRFVVNEAVEQV-AYADRIIL 102 (284)
Q Consensus 31 d~iiIE~sG~a~p~-----~i~-~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~-l~~~~~~~~~~~~~~Qi-~~Ad~ivl 102 (284)
+..+++|+|..++. .+. +.+. .+ ....+.++.|+|+...... +.+. ......+.... ...-++|+
T Consensus 215 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~---~~--~~~ad~illV~D~s~~~~~~~~~~--~~~~~~i~~~~~~~piilV~ 287 (357)
T 2e87_A 215 RYQIIDTPGLLDRPISERNEIEKQAIL---AL--RYLGNLIIYIFDPSEHCGFPLEEQ--IHLFEEVHGEFKDLPFLVVI 287 (357)
T ss_dssp EEEEEECTTTSSSCSTTSCHHHHHHHH---GG--GGTCSEEEEEECTTCTTSSCHHHH--HHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEeCCCccccchhhhhHHHHHHHH---HH--HhcCCEEEEEEeCCccccCCHHHH--HHHHHHHHHhcCCCCEEEEE
Confidence 46789999986642 111 1111 01 1235678999998653210 0000 00111222222 34457888
Q ss_pred ccCCCCChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 103 NKIDLVTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
||+|+.+..+++.+.+.++.. ..+++.++. .....+.++
T Consensus 288 NK~Dl~~~~~~~~~~~~~~~~--~~~~~~iSA~~g~gi~~l~ 327 (357)
T 2e87_A 288 NKIDVADEENIKRLEKFVKEK--GLNPIKISALKGTGIDLVK 327 (357)
T ss_dssp CCTTTCCHHHHHHHHHHHHHT--TCCCEECBTTTTBTHHHHH
T ss_pred ECcccCChHHHHHHHHHHHhc--CCCeEEEeCCCCcCHHHHH
Confidence 999998877776666666543 356666552 223444443
No 115
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=86.77 E-value=0.84 Score=35.37 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=40.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D 106 (284)
....+++++|......+... .+ -..+.++.|+|+.+.... .+.. .++ ..+..+ -...=+||+||+|
T Consensus 65 ~~~~i~Dt~G~~~~~~~~~~-----~~---~~~d~ii~v~D~~~~~s~-~~~~-~~~-~~~~~~~~~~~~piilv~NK~D 133 (181)
T 2h17_A 65 TRFLMWDIGGQESLRSSWNT-----YY---TNTEFVIVVVDSTDRERI-SVTR-EEL-YKMLAHEDLRKAGLLIFANKQD 133 (181)
T ss_dssp EEEEEEEESSSGGGTCGGGG-----GG---TTCCEEEEEEETTCTTTH-HHHH-HHH-HHHHTCGGGTTCEEEEEEECTT
T ss_pred EEEEEEECCCCHhHHHHHHH-----Hh---ccCCEEEEEEECCCHHHH-HHHH-HHH-HHHHhChhhCCCeEEEEEECCC
Confidence 45677888887543332211 11 245789999999874211 1100 000 011111 1122378889999
Q ss_pred CCChhHHHHHHHHH
Q 023301 107 LVTETELGSLTERI 120 (284)
Q Consensus 107 ~~~~~~~~~~~~~l 120 (284)
+.+....+.+.+.+
T Consensus 134 l~~~~~~~~i~~~~ 147 (181)
T 2h17_A 134 VKECMTVAEISQFL 147 (181)
T ss_dssp STTCCCHHHHHHHT
T ss_pred cccCCCHHHHHHHh
Confidence 97643344444443
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=86.52 E-value=0.2 Score=42.18 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=54.5
Q ss_pred CCCEEEEecCCCCCcHH------HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCE
Q 023301 29 QFDHIVIETTGLAKPAP------VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADR 99 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~------i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ 99 (284)
.....+++++|.....+ +...+. . .-..+.++.|+|+.++...+. +..|+ ...-+
T Consensus 51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~-----~-~~~~d~ii~V~D~t~~~~~~~----------~~~~l~~~~~pvi 114 (258)
T 3a1s_A 51 GYTINLIDLPGTYSLGYSSIDEKIARDYL-----L-KGDADLVILVADSVNPEQSLY----------LLLEILEMEKKVI 114 (258)
T ss_dssp TEEEEEEECCCCSSCCSSSHHHHHHHHHH-----H-HSCCSEEEEEEETTSCHHHHH----------HHHHHHTTTCCEE
T ss_pred CeEEEEEECCCcCccCCCCHHHHHHHHHH-----h-hcCCCEEEEEeCCCchhhHHH----------HHHHHHhcCCCEE
Confidence 34678999999876542 112111 0 125678999999998654321 23344 34568
Q ss_pred EEEccCCCCChhHHH-HHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 100 IILNKIDLVTETELG-SLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 100 ivlnK~D~~~~~~~~-~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+||+|+.+...+. ...+..+.++ .+++.++. .......++
T Consensus 115 lv~NK~Dl~~~~~i~~~~~~l~~~lg--~~vi~~SA~~g~gi~el~ 158 (258)
T 3a1s_A 115 LAMTAIDEAKKTGMKIDRYELQKHLG--IPVVFTSSVTGEGLEELK 158 (258)
T ss_dssp EEEECHHHHHHTTCCBCHHHHHHHHC--SCEEECCTTTCTTHHHHH
T ss_pred EEEECcCCCCccchHHHHHHHHHHcC--CCEEEEEeeCCcCHHHHH
Confidence 899999985432211 1233333343 57777653 233444544
No 117
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.42 E-value=2.3 Score=32.40 Aligned_cols=101 Identities=9% Similarity=0.077 Sum_probs=52.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH----hhc-CEEEEcc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV----AYA-DRIILNK 104 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi----~~A-d~ivlnK 104 (284)
....+++++|......+..... -..+.++.|+|+.+.... .+.. .++ ..+.... ... =+||.||
T Consensus 56 ~~~~~~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~i~~~~~~~~~~~~iilv~nK 124 (178)
T 2hxs_A 56 VTLQIWDIGGQTIGGKMLDKYI--------YGAQGVLLVYDITNYQSF-ENLE-DWY-TVVKKVSEESETQPLVALVGNK 124 (178)
T ss_dssp EEEEEEECTTCCTTCTTHHHHH--------TTCSEEEEEEETTCHHHH-HTHH-HHH-HHHHHHHHHHTCCCEEEEEEEC
T ss_pred EEEEEEECCCCccccchhhHHH--------hhCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHHhcccCCCCeEEEEEEc
Confidence 4567889999766544333221 135779999999875432 2110 011 1111111 122 2578899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+..+ .+...++.+..+ .++++++. .......++
T Consensus 125 ~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 164 (178)
T 2hxs_A 125 IDLEHMRTIKPEKHLRFCQENG--FSSHFVSAKTGDSVFLCF 164 (178)
T ss_dssp GGGGGGCSSCHHHHHHHHHHHT--CEEEEECTTTCTTHHHHH
T ss_pred cccccccccCHHHHHHHHHHcC--CcEEEEeCCCCCCHHHHH
Confidence 99864321 234444555443 56666653 223344443
No 118
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=86.38 E-value=0.46 Score=42.10 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=24.0
Q ss_pred cCEEEEccCCCCChhHHHHHHHHHHHhC-CCCceeeec
Q 023301 97 ADRIILNKIDLVTETELGSLTERIKHIN-AMAPVKLAK 133 (284)
Q Consensus 97 Ad~ivlnK~D~~~~~~~~~~~~~l~~~n-p~a~i~~~~ 133 (284)
.=+||+||+|++++++.+.+.+++..+. ...+++.++
T Consensus 162 ~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~S 199 (358)
T 2rcn_A 162 EPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVS 199 (358)
T ss_dssp EEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECB
T ss_pred CEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEe
Confidence 3489999999998876444555554432 345676654
No 119
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=86.11 E-value=0.53 Score=37.29 Aligned_cols=88 Identities=13% Similarity=0.139 Sum_probs=47.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-------hhcCEEEE
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-------AYADRIIL 102 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-------~~Ad~ivl 102 (284)
....|++++|......+... .+ -..+.++.|+|+.+.... ... .....++ ...=+||+
T Consensus 72 ~~~~l~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~~piilv~ 136 (201)
T 3oes_A 72 FHLHLVDTAGQDEYSILPYS-----FI---IGVHGYVLVYSVTSLHSF-QVI------ESLYQKLHEGHGKTRVPVVLVG 136 (201)
T ss_dssp EEEEEEEECCCCTTCCCCGG-----GT---TTCCEEEEEEETTCHHHH-HHH------HHHHHHHHC-----CCCEEEEE
T ss_pred EEEEEEECCCccchHHHHHH-----HH---hcCCEEEEEEeCCCHHHH-HHH------HHHHHHHHHhcCCCCCCEEEEE
Confidence 34578899996554322111 11 246789999999875432 111 1112222 22457888
Q ss_pred ccCCCCChhH--HHHHHHHHHHhCCCCceeeecc
Q 023301 103 NKIDLVTETE--LGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 103 nK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~ 134 (284)
||+|+.+..+ ....+++.+..+ +++++++.
T Consensus 137 nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa 168 (201)
T 3oes_A 137 NKADLSPEREVQAVEGKKLAESWG--ATFMESSA 168 (201)
T ss_dssp ECTTCGGGCCSCHHHHHHHHHHHT--CEEEECCT
T ss_pred ECccCccccccCHHHHHHHHHHhC--CeEEEEeC
Confidence 9999865432 233444444443 56776653
No 120
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=85.93 E-value=0.58 Score=45.29 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D 106 (284)
.+..||+|+|+.++....... . ..+ -..+.++.|+|+.+.... .+ . ..+...+. ..-++|+||+|
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~-~-~~i---~~aD~vL~Vvda~~~~s~-~e-----~-~~l~~~l~~~~~~iiiVlNK~D 241 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELS-L-GYV---NNCHAILFVMRASQPCTL-GE-----R-RYLENYIKGRGLTVFFLVNAWD 241 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHH-T-HHH---HSSSEEEEEEETTSTTCH-HH-----H-HHHHHHTTTSCCCEEEEEECGG
T ss_pred CCeEEEECCCCCchhhHHHHH-H-HHH---HhCCEEEEEEeCCCccch-hH-----H-HHHHHHHHhhCCCEEEEEECcc
Confidence 579999999988754322211 1 112 246789999999764221 00 0 11222332 23578999999
Q ss_pred CCCh
Q 023301 107 LVTE 110 (284)
Q Consensus 107 ~~~~ 110 (284)
+.+.
T Consensus 242 l~~~ 245 (695)
T 2j69_A 242 QVRE 245 (695)
T ss_dssp GGGG
T ss_pred cccc
Confidence 8754
No 121
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=85.86 E-value=0.65 Score=39.33 Aligned_cols=72 Identities=17% Similarity=0.316 Sum_probs=39.0
Q ss_pred CCCEEEEecCCCCC------cHHH---HHHhcccccccceeeeceEE-EEEcccchHHhhhhcCCccchHHHHHHHh---
Q 023301 29 QFDHIVIETTGLAK------PAPV---IETFCTDELVSQYVKLDGVI-TLVDSKHAMQHLNEVKPRFVVNEAVEQVA--- 95 (284)
Q Consensus 29 ~~d~iiIE~sG~a~------p~~i---~~~l~~~~~l~~~~~l~~vv-~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~--- 95 (284)
.++..|++|+|+.. +..+ ...+.. ..+. .-+.+| +|+|+..-.... .. ..+..++.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~il~v~d~~~~~~~~------~~-~~~~~~~~~~~ 192 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLM-QFVT---KENCLILAVSPANSDLANS------DA-LKIAKEVDPQG 192 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHH-HHHT---STTEEEEEEEESSSCGGGC------HH-HHHHHHHCTTC
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHH-HHHc---CCCeEEEEEecCCcchhhh------HH-HHHHHHhCCCC
Confidence 37999999999975 4332 222111 1111 223344 789997632110 00 11233433
Q ss_pred hcCEEEEccCCCCChh
Q 023301 96 YADRIILNKIDLVTET 111 (284)
Q Consensus 96 ~Ad~ivlnK~D~~~~~ 111 (284)
..-++|+||+|+.+..
T Consensus 193 ~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 193 QRTIGVITKLDLMDEG 208 (299)
T ss_dssp SSEEEEEECGGGSCTT
T ss_pred CeEEEEEEccccCCCC
Confidence 3448999999998654
No 122
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.85 E-value=1.8 Score=39.28 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=42.9
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh----hcCEEEE
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA----YADRIIL 102 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~----~Ad~ivl 102 (284)
..+|+|||+|.|..... .+...+. .+......+.++.|+|+..-.... .. ...+. ....||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~---~i~~~~~~d~vllVvda~~g~~~~---------~~-~~~~~~~~~~i~gvVl 245 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMK---QIKEITNPDEIILVIDGTIGQQAG---------IQ-AKAFKEAVGEIGSIIV 245 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHH---HTTSSSCCSEEEEEEEGGGGGGHH---------HH-HHHHHTTSCSCEEEEE
T ss_pred hCCCEEEEcCCCCccccHHHHHHHH---HHHHHhcCcceeEEeeccccHHHH---------HH-HHHHhhcccCCeEEEE
Confidence 46899999999998753 2333332 122334567789999997643211 11 12222 2268999
Q ss_pred ccCCCCC
Q 023301 103 NKIDLVT 109 (284)
Q Consensus 103 nK~D~~~ 109 (284)
||.|...
T Consensus 246 nK~D~~~ 252 (432)
T 2v3c_C 246 TKLDGSA 252 (432)
T ss_dssp ECSSSCS
T ss_pred eCCCCcc
Confidence 9999864
No 123
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.76 E-value=2.1 Score=32.16 Aligned_cols=86 Identities=10% Similarity=0.097 Sum_probs=44.4
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh---cC---EEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY---AD---RIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~---Ad---~ivlnK 104 (284)
...+++++|......+..... -..+.++.|+|+...... ... .....++.. .+ ++|.||
T Consensus 56 ~~~~~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~~iilv~nK 120 (170)
T 1r2q_A 56 KFEIWDTAGQERYHSLAPMYY--------RGAQAAIVVYDITNEESF-ARA------KNWVKELQRQASPNIVIALSGNK 120 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHH--------TTCSEEEEEEETTCHHHH-HHH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCCcHHhhhhhHHhc--------cCCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCcEEEEEEC
Confidence 456788999655443332221 135678999999875432 111 111222221 12 345599
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+.++.+ .+...++.+.. ..+++.++
T Consensus 121 ~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~S 149 (170)
T 1r2q_A 121 ADLANKRAVDFQEAQSYADDN--SLLFMETS 149 (170)
T ss_dssp GGGGGGCCSCHHHHHHHHHHT--TCEEEECC
T ss_pred ccCccccccCHHHHHHHHHHc--CCeEEEEe
Confidence 99865322 23444444433 35666654
No 124
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=85.74 E-value=0.45 Score=43.92 Aligned_cols=103 Identities=12% Similarity=0.253 Sum_probs=52.4
Q ss_pred CCEEEEecCCCC-CcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCC
Q 023301 30 FDHIVIETTGLA-KPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDL 107 (284)
Q Consensus 30 ~d~iiIE~sG~a-~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~ 107 (284)
....|++|.|+- .+...++.+-....+...-..+.++.|+|+...... .+ ..+.+.+. ..-+||+||+|+
T Consensus 291 ~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~-~~-------~~il~~l~~~piivV~NK~DL 362 (482)
T 1xzp_A 291 ILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDE-ED-------RKILERIKNKRYLVVINKVDV 362 (482)
T ss_dssp EEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCH-HH-------HHHHHHHTTSSEEEEEEECSS
T ss_pred eEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCH-HH-------HHHHHHhcCCCEEEEEECccc
Confidence 356899999998 654322111000011112356789999998763221 11 11223332 244788899999
Q ss_pred CChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 108 VTETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 108 ~~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
.+....+.+.+.+ ....+++.++. ....++.++
T Consensus 363 ~~~~~~~~~~~~~---~~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 363 VEKINEEEIKNKL---GTDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp CCCCCHHHHHHHH---TCSTTEEEEEGGGTCCHHHHH
T ss_pred ccccCHHHHHHHh---cCCCcEEEEECCCCCCHHHHH
Confidence 7542333343332 22356666553 233455544
No 125
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=85.64 E-value=0.94 Score=43.77 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=47.3
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
.....||+|+|..+....... .+ -..+.++.|+|+........ ..+.. ...+....-++|+||+|+.
T Consensus 74 ~~~i~liDTPG~~df~~~~~~-----~l---~~aD~~llVvDa~~g~~~~~----~~~~~-~~~~~~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVER-----SL---RVLDGAVTVLDAQSGVEPQT----ETVWR-QATTYGVPRIVFVNKMDKL 140 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHH-----HH---HHCSEEEEEEETTTBSCHHH----HHHHH-HHHHTTCCEEEEEECTTST
T ss_pred CeeEEEEECcCCcchHHHHHH-----HH---HHCCEEEEEECCCCCCcHHH----HHHHH-HHHHcCCCEEEEEECCCcc
Confidence 346789999999875433221 11 23778999999976322100 00101 1233345668999999997
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
+. +...+.+.+++.
T Consensus 141 ~~-~~~~~~~~l~~~ 154 (693)
T 2xex_A 141 GA-NFEYSVSTLHDR 154 (693)
T ss_dssp TC-CHHHHHHHHHHH
T ss_pred cc-chHHHHHHHHHH
Confidence 64 344455555544
No 126
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=85.55 E-value=1.5 Score=40.26 Aligned_cols=95 Identities=7% Similarity=0.085 Sum_probs=45.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHH--hhhhcCCccchHH-HHHHHhhcC-EEEEccC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQ--HLNEVKPRFVVNE-AVEQVAYAD-RIILNKI 105 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~--~l~~~~~~~~~~~-~~~Qi~~Ad-~ivlnK~ 105 (284)
..+.|++|+|-.+..... ....-..+.+|.|||+..-.. .+.. .+...... ...++.... +|++||+
T Consensus 121 ~~~~iiDtPGh~~f~~~~--------~~~~~~aD~~ilVvDa~~g~~e~sf~~-~~qt~e~l~~~~~~~vp~iivviNK~ 191 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNM--------INGASQADIGVLVISARRGEFEAGFER-GGQTREHAVLARTQGINHLVVVINKM 191 (467)
T ss_dssp EEEEECCCCC-------------------TTSCSEEEEEEECSTTHHHHTTST-TCCHHHHHHHHHHTTCSSEEEEEECT
T ss_pred eEEEEEECCCcHHHHHHH--------HhhcccCCEEEEEEeCCcCccccccCC-CCcHHHHHHHHHHcCCCEEEEEEECc
Confidence 356789999976543211 112235788999999987531 1110 01111111 123344443 5779999
Q ss_pred CCCC----hhHHH----HHHHHHHHh-C-C---CCceeeec
Q 023301 106 DLVT----ETELG----SLTERIKHI-N-A---MAPVKLAK 133 (284)
Q Consensus 106 D~~~----~~~~~----~~~~~l~~~-n-p---~a~i~~~~ 133 (284)
|+.+ .+.++ +++++++.+ . . .++++.++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vS 232 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVS 232 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECB
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecc
Confidence 9954 23333 345555554 2 1 45666654
No 127
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.98 E-value=2.8 Score=32.58 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=52.5
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-----hhcCEEEEccC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-----AYADRIILNKI 105 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-----~~Ad~ivlnK~ 105 (284)
...+++++|......+..... -..+.++.|+|+...... .+. ...... ..++ ...=+||+||+
T Consensus 57 ~~~l~Dt~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~--~~~~~~-i~~~~~~~~~~piilv~nK~ 124 (199)
T 2gf0_A 57 TLQITDTTGSHQFPAMQRLSI--------SKGHAFILVFSVTSKQSL-EEL--GPIYKL-IVQIKGSVEDIPVMLVGNKC 124 (199)
T ss_dssp EEEEEECCGGGSCHHHHHHHH--------HHCSEEEEEEETTCHHHH-HTT--HHHHHH-HHHHHSCGGGSCEEEEEECT
T ss_pred EEEEEeCCChHHhHHHHHHhh--------ccCCEEEEEEECcCHHHH-HHH--HHHHHH-HHHHhcCCCCCCEEEEEECc
Confidence 456889999777665443321 135778999999874432 211 001011 1222 12347888999
Q ss_pred CCCChh-HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 106 DLVTET-ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 106 D~~~~~-~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+.+.+ ..+...+..+..+ .+++.++. .......++
T Consensus 125 Dl~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 125 DETQREVDTREAQAVAQEWK--CAFMETSAKMNYNVKELF 162 (199)
T ss_dssp TCSSCSSCHHHHHHHHHHHT--CEEEECBTTTTBSHHHHH
T ss_pred cCCccccCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHH
Confidence 996532 2334444444443 46666653 233444444
No 128
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=84.84 E-value=0.56 Score=36.62 Aligned_cols=76 Identities=21% Similarity=0.160 Sum_probs=41.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH------hhcCEEEEc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV------AYADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi------~~Ad~ivln 103 (284)
....+++++|......+ .. ..+ -..+.++.|+|+.+.... .+. ...+...+ ...=+||+|
T Consensus 66 ~~~~~~Dt~G~~~~~~~----~~-~~~---~~~d~ii~v~d~~~~~s~-~~~-----~~~~~~~~~~~~~~~~piilv~n 131 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPY----WR-CYF---SDTDAVIYVVDSTDRDRM-GVA-----KHELYALLDEDELRKSLLLIFAN 131 (189)
T ss_dssp EEEEEEEECCSSSSCCC----CS-SSS---TTCCEEEEEEETTCCTTH-HHH-----HHHHHHHHTCSTTTTCEEEEEEE
T ss_pred EEEEEEECCCCHhHHHH----HH-HHh---hcCCEEEEEEeCCCHHHH-HHH-----HHHHHHHHhhhhcCCCeEEEEEE
Confidence 45678899997654321 11 111 256789999999764211 110 01111221 223478889
Q ss_pred cCCCCChhHHHHHHHH
Q 023301 104 KIDLVTETELGSLTER 119 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~ 119 (284)
|+|+.+....+.+.+.
T Consensus 132 K~Dl~~~~~~~~~~~~ 147 (189)
T 2x77_A 132 KQDLPDAASEAEIAEQ 147 (189)
T ss_dssp CTTSTTCCCHHHHHHH
T ss_pred CCCCcCCCCHHHHHHH
Confidence 9999775444444443
No 129
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=84.83 E-value=1.6 Score=44.64 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=52.1
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~D~ 107 (284)
...+.|++|+|..+...... ...-..+.+|.|||+..-.. .+ .+... ....+..... +|++||+|+
T Consensus 358 ~~kI~IIDTPGHedF~~~mi--------~gas~AD~aILVVDAtdGv~--~Q--TrEhL-~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 358 TRHYAHVDCPGHADYVKNMI--------TGAAQMDGAILVVAATDGPM--PQ--TREHI-LLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp SCEEEEEECCCHHHHHHHHH--------HTSCCCSEEEEEEETTTCSC--TT--HHHHH-HHHHHHTCSCEEEEEECCTT
T ss_pred CEEEEEEECCChHHHHHHHH--------HHHhhCCEEEEEEcCCccCc--HH--HHHHH-HHHHHcCCCeEEEEEeeccc
Confidence 35678999999765432111 11235788999999976321 11 00000 1123444454 578999999
Q ss_pred CChhH-H----HHHHHHHHHhCC---CCceeeecc
Q 023301 108 VTETE-L----GSLTERIKHINA---MAPVKLAKY 134 (284)
Q Consensus 108 ~~~~~-~----~~~~~~l~~~np---~a~i~~~~~ 134 (284)
.+.++ + +++++.++..+- ..+++.++.
T Consensus 425 v~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSA 459 (1289)
T 3avx_A 425 VDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSA 459 (1289)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCS
T ss_pred ccchhhHHHHHHHHHHHHHhccccccceeEEEEEe
Confidence 86332 3 345555655542 467877653
No 130
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=84.66 E-value=2.2 Score=38.67 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=40.9
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
..+|+|||+|+|..... .+...+.. +.....-+.++.|+|+......+. ....+...+. -.-||+||.|
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~---~~~~~~p~~vllVvda~~g~~~~~------~~~~f~~~l~-i~gvVlnK~D 251 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQ---VHASINPVETLFVVDAMTGQDAAN------TAKAFNEALP-LTGVVLTKVD 251 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHH---HHHHSCCSEEEEEEETTBCTTHHH------HHHHHHHHSC-CCCEEEECTT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHH---HHHhhcCcceeEEeecchhHHHHH------HHHHHhccCC-CeEEEEecCC
Confidence 57999999999987753 34443321 112234567889999976322111 0011111221 1458999999
Q ss_pred CCC
Q 023301 107 LVT 109 (284)
Q Consensus 107 ~~~ 109 (284)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 753
No 131
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=84.60 E-value=1.4 Score=35.57 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=47.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK 104 (284)
...|++++|......+.. ..+ -..+.+|.|+|+...... .+. ..+..++. ..=+||+||
T Consensus 63 ~~~i~Dt~G~~~~~~~~~-----~~~---~~~d~vilV~D~~~~~s~-~~~------~~~l~~i~~~~~~~~piilv~nK 127 (223)
T 3cpj_B 63 KAQIWDTAGQERYRAITS-----AYY---RGAVGALIVYDISKSSSY-ENC------NHWLSELRENADDNVAVGLIGNK 127 (223)
T ss_dssp EEEEECCTTTTTTTCCCG-----GGT---TTCCEEEEEEC-CCHHHH-HHH------HHHHHHHHHHCC--CEEEEEECC
T ss_pred EEEEEECCCccchhhhHH-----HHh---ccCCEEEEEEeCCCHHHH-HHH------HHHHHHHHHhCCCCCeEEEEEEC
Confidence 456778888554322111 111 245779999999875432 111 11122222 223678899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+..+ .+...++.+..+ .++++++. .......++
T Consensus 128 ~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 128 SDLAHLRAVPTEESKTFAQENQ--LLFTETSALNSENVDKAF 167 (223)
T ss_dssp GGGGGGCCSCHHHHHHHHHHTT--CEEEECCCC-CCCHHHHH
T ss_pred cccccccccCHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 99865322 234445554433 56766653 233444444
No 132
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=84.58 E-value=3.4 Score=31.68 Aligned_cols=99 Identities=10% Similarity=0.144 Sum_probs=49.1
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~~ 108 (284)
..+++++|......+..... -..+.++.|+|+...... .+.. .+. ..+.... ...=+||+||+|+.
T Consensus 54 ~~i~Dt~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 54 LDILDTAGQEEYSAMRDQYM--------RTGEGFLCVFAINNTKSF-EDIH-HYR-EQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEECCCC---CTTHHHHH--------HHCSEEEEEEETTCHHHH-HHHH-HHH-HHHHHHTTCSCCCEEEEEECTTSS
T ss_pred EEEEECCCcHHHHHHHHHHH--------hcCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHhcCCCCCcEEEEEECccCc
Confidence 45689999766544433321 135678999999874332 1110 000 1111111 12347888999996
Q ss_pred ChhH-HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 109 TETE-LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 109 ~~~~-~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+... .+.+.+..+..+ .+++.++. .......++
T Consensus 123 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~g~gi~~l~ 157 (189)
T 4dsu_A 123 SRTVDTKQAQDLARSYG--IPFIETSAKTRQGVDDAF 157 (189)
T ss_dssp SCSSCHHHHHHHHHHHT--CCEEECCTTTCTTHHHHH
T ss_pred ccccCHHHHHHHHHHcC--CeEEEEeCCCCCCHHHHH
Confidence 5322 334444444444 56776653 233455544
No 133
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=84.13 E-value=2.3 Score=37.61 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=50.1
Q ss_pred CEEEEecCCC-CC-cHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccC
Q 023301 31 DHIVIETTGL-AK-PAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKI 105 (284)
Q Consensus 31 d~iiIE~sG~-a~-p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~ 105 (284)
...++.|.|. .+ |..+++.+.. .+...-..+.++.|+|+.+......... .. ...+..++. ..-++|.||+
T Consensus 227 ~v~l~DT~G~i~~lp~~lve~f~~--tl~~~~~aD~il~VvD~s~~~~~~~~~~-~~-~~~~L~~l~~~~~p~ilV~NK~ 302 (364)
T 2qtf_A 227 KIMLVDTVGFIRGIPPQIVDAFFV--TLSEAKYSDALILVIDSTFSENLLIETL-QS-SFEILREIGVSGKPILVTLNKI 302 (364)
T ss_dssp EEEEEECCCBCSSCCGGGHHHHHH--HHHGGGGSSEEEEEEETTSCHHHHHHHH-HH-HHHHHHHHTCCSCCEEEEEECG
T ss_pred EEEEEeCCCchhcCCHHHHHHHHH--HHHHHHhCCEEEEEEECCCCcchHHHHH-HH-HHHHHHHhCcCCCCEEEEEECC
Confidence 4567899996 33 5555444321 1222345678899999876431001000 00 012233432 3457888999
Q ss_pred CCCChhHH---HHHHHHHHHh-CCCCceeeec
Q 023301 106 DLVTETEL---GSLTERIKHI-NAMAPVKLAK 133 (284)
Q Consensus 106 D~~~~~~~---~~~~~~l~~~-np~a~i~~~~ 133 (284)
|+.+.... ..+.+..+.+ .+..+++.++
T Consensus 303 Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 303 DKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 99875422 1222233555 4444555554
No 134
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=83.76 E-value=2 Score=41.61 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=47.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
.++.||+|+|-.+....... .+ -..+.+|.|+|+........ ..... ...+....-++++||+|+..
T Consensus 82 ~~i~liDTPG~~df~~~~~~-----~l---~~aD~aIlVvDa~~gv~~qt----~~~~~-~~~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 82 HRINIIDTPGHVDFTIEVER-----SM---RVLDGAVMVYCAVGGVQPQS----ETVWR-QANKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eeEEEEeCCCccchHHHHHH-----HH---HHCCEEEEEEeCCCCCcHHH----HHHHH-HHHHcCCCEEEEEeCCCccc
Confidence 77899999999885433222 11 24678999999986432100 00000 11223445689999999965
Q ss_pred hhHHHHHHHHHHHh
Q 023301 110 ETELGSLTERIKHI 123 (284)
Q Consensus 110 ~~~~~~~~~~l~~~ 123 (284)
. ...++.+.++..
T Consensus 149 ~-~~~~~~~~l~~~ 161 (704)
T 2rdo_7 149 A-NFLKVVNQIKTR 161 (704)
T ss_pred c-cHHHHHHHHHHH
Confidence 4 345555555544
No 135
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=83.67 E-value=1.4 Score=42.46 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=48.9
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
.....||+|+|..+........ + -..+.+|.|+|+......-. ..... ...+....-++|+||+|+.
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~-----l---~~aD~~ilVvDa~~g~~~~t----~~~~~-~~~~~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERS-----M---RVLDGAIVVFDSSQGVEPQS----ETVWR-QAEKYKVPRIAFANKMDKT 142 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHH-----H---HHCSEEEEEEETTTCSCHHH----HHHHH-HHHHTTCCEEEEEECTTST
T ss_pred CeEEEEEECcCccchHHHHHHH-----H---HHCCEEEEEEECCCCcchhh----HHHHH-HHHHcCCCEEEEEECCCcc
Confidence 4567899999998855433221 1 24678999999986332100 00001 1233455678999999997
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
.. +...+.+.+++.
T Consensus 143 ~~-~~~~~~~~l~~~ 156 (691)
T 1dar_A 143 GA-DLWLVIRTMQER 156 (691)
T ss_dssp TC-CHHHHHHHHHHT
T ss_pred cC-CHHHHHHHHHHH
Confidence 54 355555666654
No 136
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=83.57 E-value=2.4 Score=39.48 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=41.5
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKI 105 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~ 105 (284)
...+.||+|+|..+....... .+ -..+.+|.|+|+....... . ..+..++ ...-++++||+
T Consensus 81 ~~~i~liDTPG~~df~~~~~~-----~l---~~aD~~IlVvDa~~g~~~~-------t-~~~~~~~~~~~ipiivviNK~ 144 (529)
T 2h5e_A 81 DCLVNLLDTPGHEDFSEDTYR-----TL---TAVDCCLMVIDAAKGVEDR-------T-RKLMEVTRLRDTPILTFMNKL 144 (529)
T ss_dssp TEEEEEECCCCSTTCCHHHHH-----GG---GGCSEEEEEEETTTCSCHH-------H-HHHHHHHTTTTCCEEEEEECT
T ss_pred CeEEEEEECCCChhHHHHHHH-----HH---HHCCEEEEEEeCCccchHH-------H-HHHHHHHHHcCCCEEEEEcCc
Confidence 456789999999875542222 11 2577899999997632110 0 1122222 33458899999
Q ss_pred CCCChhH
Q 023301 106 DLVTETE 112 (284)
Q Consensus 106 D~~~~~~ 112 (284)
|+.+.+.
T Consensus 145 Dl~~~~~ 151 (529)
T 2h5e_A 145 DRDIRDP 151 (529)
T ss_dssp TSCCSCH
T ss_pred CCccccH
Confidence 9976543
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=83.57 E-value=0.19 Score=45.66 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=40.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCCh
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTE 110 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~ 110 (284)
...+++|+|..+...+-.. .........-..+.++.|+|+ ........ .... ..+....-++|+||+|+.+.
T Consensus 84 ~l~liDTpG~~d~~~l~~~-~~~~~~~~l~~aD~vllVvD~-~~~~~~~~-----~l~~-l~~~~~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRL-RVEKARRVFYRADCGILVTDS-APTPYEDD-----VVNL-FKEMEIPFVVVVNKIDVLGE 155 (423)
T ss_dssp EEEEEECSSTTCCCTTCCC-CHHHHHHHHTSCSEEEEECSS-SCCHHHHH-----HHHH-HHHTTCCEEEECCCCTTTTC
T ss_pred eEEEEECcCCCcccchhHH-HHHHHHHHHhcCCEEEEEEeC-CChHHHHH-----HHHH-HHhcCCCEEEEEeCcCCCCc
Confidence 5788999999876432100 000001111246789999999 33322111 1111 22334556888999999776
Q ss_pred hHH
Q 023301 111 TEL 113 (284)
Q Consensus 111 ~~~ 113 (284)
...
T Consensus 156 ~~~ 158 (423)
T 3qq5_A 156 KAE 158 (423)
T ss_dssp CCT
T ss_pred cHH
Confidence 554
No 138
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=83.34 E-value=0.31 Score=46.24 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=39.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH--HhhhhcCCccchH-HHHHHHhhcC-EEEEccC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM--QHLNEVKPRFVVN-EAVEQVAYAD-RIILNKI 105 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~--~~l~~~~~~~~~~-~~~~Qi~~Ad-~ivlnK~ 105 (284)
..+.||+|+|..+... ......-..+.+|.|||+..-. ..+.. .+..... .+..++.... +||+||+
T Consensus 255 ~~i~iiDTPGh~~f~~--------~~~~~~~~aD~alLVVDa~~g~~e~gi~~-~~qt~e~l~~~~~lgip~iIvviNKi 325 (592)
T 3mca_A 255 KIYEIGDAPGHRDFIS--------GMIAGASSADFAVLVVDSSQNNFERGFLE-NGQTREHAYLLRALGISEIVVSVNKL 325 (592)
T ss_dssp ----CCEEESSSEEEE--------ECCC-------CCSEEEEEECCSSTTSCS-CSSHHHHHHHHHHSSCCCEEEEEECG
T ss_pred eEEEEEECCChHHHHH--------HHHHHHhhCCEEEEEEECCCCcccccccc-chHHHHHHHHHHHcCCCeEEEEEecc
Confidence 4667888998765321 1122233577899999998621 00000 0001101 1223344443 4588999
Q ss_pred CCCC--hhHHHHHHHHHHHhC
Q 023301 106 DLVT--ETELGSLTERIKHIN 124 (284)
Q Consensus 106 D~~~--~~~~~~~~~~l~~~n 124 (284)
|+++ .+.++.+.+.++.+.
T Consensus 326 Dl~~~~~~~~~~i~~el~~~l 346 (592)
T 3mca_A 326 DLMSWSEDRFQEIKNIVSDFL 346 (592)
T ss_dssp GGGTTCHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHH
Confidence 9975 555666666666543
No 139
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.26 E-value=6.3 Score=34.07 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=50.2
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhccc-cccc--ceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh--cCEEE
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTD-ELVS--QYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY--ADRII 101 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~-~~l~--~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~--Ad~iv 101 (284)
..+|+|||+|+|..... .++..+..- ..+. ....-+.++.|+|+..-...+.. +....+. -.-||
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~~~~l~~---------~~~~~~~~~i~GvV 260 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTGQNGVIQ---------AEEFSKVADVSGII 260 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGTHHHHHH---------HHHHTTTSCCCEEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCcHHHHHH---------HHHHhhcCCCcEEE
Confidence 67999999999988753 233332110 0000 01124578999999864332221 1111112 33489
Q ss_pred EccCCCCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 102 LNKIDLVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 102 lnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
+||.|.... ...+...+...+ .+|.....|
T Consensus 261 ltk~d~~~~--~g~~~~~~~~~~--~Pi~~i~~G 290 (320)
T 1zu4_A 261 LTKMDSTSK--GGIGLAIKELLN--IPIKMIGVG 290 (320)
T ss_dssp EECGGGCSC--TTHHHHHHHHHC--CCEEEEECS
T ss_pred EeCCCCCCc--hhHHHHHHHHHC--cCEEEEeCC
Confidence 999997442 224445555554 455444444
No 140
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=83.25 E-value=1 Score=37.74 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=37.9
Q ss_pred CEEEEecCCCCCcH----HHHHHhcccccccceeeeceEEEEEcccc--hHHhhhhcCCccchHHHHHHHh--------h
Q 023301 31 DHIVIETTGLAKPA----PVIETFCTDELVSQYVKLDGVITLVDSKH--AMQHLNEVKPRFVVNEAVEQVA--------Y 96 (284)
Q Consensus 31 d~iiIE~sG~a~p~----~i~~~l~~~~~l~~~~~l~~vv~vvD~~~--~~~~l~~~~~~~~~~~~~~Qi~--------~ 96 (284)
...|++|+|..+.. ...+.+.. .+ ..-..+.++.|+|... +... . ..+..++. .
T Consensus 88 ~l~iiDTpG~~~~~~~~~~~~~~i~~--~~-~~~~~d~il~v~~~d~~~~~~~-~--------~~~~~~l~~~~~~~~~~ 155 (270)
T 1h65_A 88 TLNIIDTPGLIEGGYINDMALNIIKS--FL-LDKTIDVLLYVDRLDAYRVDNL-D--------KLVAKAITDSFGKGIWN 155 (270)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHH--HT-TTCEECEEEEEEESSCCCCCHH-H--------HHHHHHHHHHHCGGGGG
T ss_pred EEEEEECCCCCCCccchHHHHHHHHH--Hh-hcCCCCEEEEEEeCCCCcCCHH-H--------HHHHHHHHHHhCccccc
Confidence 57899999997653 22222210 01 1125788999966543 2211 0 01122222 2
Q ss_pred cCEEEEccCCCCChh
Q 023301 97 ADRIILNKIDLVTET 111 (284)
Q Consensus 97 Ad~ivlnK~D~~~~~ 111 (284)
.-++|+||+|+.+++
T Consensus 156 ~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 156 KAIVALTHAQFSPPD 170 (270)
T ss_dssp GEEEEEECCSCCCGG
T ss_pred CEEEEEECcccCCcC
Confidence 457889999998654
No 141
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=83.13 E-value=2.2 Score=39.69 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=48.0
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh-----hcCEEEEc
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-----YADRIILN 103 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-----~Ad~ivln 103 (284)
.....+++++|......+...+ +. ..+.+|.|+|+.++... ..+..++. ..-+||.|
T Consensus 97 ~~~~~i~Dt~G~e~~~~~~~~~-----l~---~~d~ii~V~D~s~~~~~----------~~~~~~l~~~~~~~pvilV~N 158 (535)
T 3dpu_A 97 ECLFHFWDFGGQEIMHASHQFF-----MT---RSSVYMLLLDSRTDSNK----------HYWLRHIEKYGGKSPVIVVMN 158 (535)
T ss_dssp TCEEEEECCCSCCTTTTTCHHH-----HH---SSEEEEEEECGGGGGGH----------HHHHHHHHHHSSSCCEEEEEC
T ss_pred eEEEEEEECCcHHHHHHHHHHH-----cc---CCcEEEEEEeCCCchhH----------HHHHHHHHHhCCCCCEEEEEE
Confidence 4567888999954433222111 11 35678999999876321 12233333 34578889
Q ss_pred cCCCCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 104 KIDLVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 104 K~D~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
|+|+.+..+ .+.+++..+.++ .+++.++
T Consensus 159 K~Dl~~~~~v~~~~~~~~~~~~~--~~~~~vS 188 (535)
T 3dpu_A 159 KIDENPSYNIEQKKINERFPAIE--NRFHRIS 188 (535)
T ss_dssp CTTTCTTCCCCHHHHHHHCGGGT--TCEEECC
T ss_pred CCCcccccccCHHHHHHHHHhcC--CceEEEe
Confidence 999976433 344444444433 4566654
No 142
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=83.01 E-value=1.8 Score=33.16 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=46.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~ 107 (284)
...+++++|......+... .+ -..+.++.|+|....... .... .+ ...+.... ...-+||+||+|+
T Consensus 55 ~~~l~Dt~G~~~~~~~~~~-----~~---~~~~~~i~v~d~~~~~s~-~~~~-~~-~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 55 HLQLVDTAGQDEYSIFPQT-----YS---IDINGYILVYSVTSIKSF-EVIK-VI-HGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp EEEEEECCCCCTTCCCCGG-----GT---TTCSEEEEEEETTCHHHH-HHHH-HH-HHHHHHHC----CCEEEEEECTTC
T ss_pred EEEEEeCCCchhhhHHHHH-----HH---hcCCEEEEEEECCCHHHH-HHHH-HH-HHHHHHhcCCCCCCEEEEEECccc
Confidence 3468899997654321111 11 146789999999874432 1110 00 01122222 2344788899998
Q ss_pred CChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 108 VTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
.+..+ .+..+++.+.. .+++++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~--~~~~~~~S 149 (181)
T 3t5g_A 124 HMERVISYEEGKALAESW--NAAFLESS 149 (181)
T ss_dssp TTTCCSCHHHHHHHHHHT--TCEEEECC
T ss_pred hhcceecHHHHHHHHHHh--CCcEEEEe
Confidence 54322 24445555544 35677665
No 143
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=82.92 E-value=0.66 Score=39.69 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=39.3
Q ss_pred CCCEEEEecCCCCC-c-----HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCE
Q 023301 29 QFDHIVIETTGLAK-P-----APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADR 99 (284)
Q Consensus 29 ~~d~iiIE~sG~a~-p-----~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ 99 (284)
..+.+||+|+|+.. + ..+-..+.. ......-..+.++.|+|+.+.. +... .. ..+..++ ...-+
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~iilvvd~~~~~--~~~~-~~---~~i~~~~~~~~~~~i 202 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRR-MVMAYIKKQNAIIVAVTPANTD--LANS-DA---LQLAKEVDPEGKRTI 202 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHH-HHHHHHHSTTEEEEEEEESSSC--STTC-SH---HHHHHHHCSSCSSEE
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHH-HHHHHHcCCCeEEEEEEecCcc--hhhh-HH---HHHHHHhCCCCCcEE
Confidence 46899999999975 2 111111100 0011112456789999974321 1110 00 1223343 34558
Q ss_pred EEEccCCCCChhH
Q 023301 100 IILNKIDLVTETE 112 (284)
Q Consensus 100 ivlnK~D~~~~~~ 112 (284)
+|+||+|+.+...
T Consensus 203 ~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 203 GVITKLDLMDKGT 215 (315)
T ss_dssp EEEECTTSSCSSC
T ss_pred EEEcCcccCCcch
Confidence 8999999986543
No 144
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.91 E-value=3.8 Score=30.64 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=48.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDLV 108 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~~ 108 (284)
...+++++|......+..... -..+.++.|+|+.+.... .+.. .++ ..+.... ...=++|+||+|+.
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYY--------RNAQAALVVYDVTKPQSF-IKAR-HWV-KELHEQASKDIIIALVGNKIDXL 121 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHH--------TTCSEEEEEEETTCHHHH-HHHH-HHH-HHHHHHSCTTCEEEEEEECGGGG
T ss_pred EEEEEECCCChhhhhhhhhhh--------ccCcEEEEEEecCChHHH-HHHH-HHH-HHHHHhcCCCCcEEEEEECCCcc
Confidence 456789999655444332221 135779999999875432 1110 011 1111111 22335788999986
Q ss_pred Ch---hH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 109 TE---TE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 109 ~~---~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+. .+ .+..++..+..+ ++++.++. .......++
T Consensus 122 ~~~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 122 QEGGERKVAREEGEKLAEEKG--LLFFETSAKTGENVNDVF 160 (170)
T ss_dssp GSSCCCCSCHHHHHHHHHHHT--CEEEECCTTTCTTHHHHH
T ss_pred ccccccCCCHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 53 11 123333333332 56666553 233344443
No 145
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.77 E-value=4 Score=36.88 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=50.1
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
..+|+|||+|+|..... .+...+. .+...+.-+.++.|+|+..-...+.. ...+.+.+ .-.-||+||.|
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~---~i~~~~~pd~vlLVvDa~tgq~av~~------a~~f~~~l-~i~GVIlTKlD 248 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELA---RLKEVLGPDEVLLVLDAMTGQEALSV------ARAFDEKV-GVTGLVLTKLD 248 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHH------HHHHHHHT-CCCEEEEESGG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHH---HhhhccCCceEEEEEeccchHHHHHH------HHHHHhcC-CceEEEEeCcC
Confidence 67999999999987642 2333321 11222345678999999764322111 01111222 23678999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeeccCC
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKYGS 136 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~g~ 136 (284)
..... ..+........ .+|.....|+
T Consensus 249 ~~~~~--g~alsi~~~~g--~PI~flg~Ge 274 (425)
T 2ffh_A 249 GDARG--GAALSARHVTG--KPIYFAGVSE 274 (425)
T ss_dssp GCSSC--HHHHHHHHHHC--CCEEEEECSS
T ss_pred CcccH--HHHHHHHHHHC--CCEEEEeCCC
Confidence 74321 22333333333 4555444443
No 146
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=82.69 E-value=7.6 Score=30.36 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=44.0
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC--------E
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD--------R 99 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad--------~ 99 (284)
..+|+|||+++|...... ...+. ..+.+|.++++.... .-- ..+.+.+.... .
T Consensus 74 ~~yD~viiD~~~~~~~~~-~~~l~---------~ad~viiv~~~~~~~-~~~--------~~~~~~l~~~~~~~~~~~~~ 134 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLSVIT-SAAVM---------VSDLVIIPVTPSPLD-FSA--------AGSVVTVLEAQAYSRKVEAR 134 (206)
T ss_dssp TTSSEEEEECCSSSSHHH-HHHHH---------HCSEEEEEECSCTTT-HHH--------HHHHHHHHTTSCGGGCCEEE
T ss_pred CCCCEEEEECCCCCCHHH-HHHHH---------HCCEEEEEecCCHHH-HHH--------HHHHHHHHHHHHhCCCCcEE
Confidence 469999999998775432 22221 234588888887653 210 12233333221 7
Q ss_pred EEEccCCCCChhHHHHHHHHHHHhC
Q 023301 100 IILNKIDLVTETELGSLTERIKHIN 124 (284)
Q Consensus 100 ivlnK~D~~~~~~~~~~~~~l~~~n 124 (284)
+|+||.+..+. ....+++.+++..
T Consensus 135 vv~N~~~~~~~-~~~~~~~~l~~~~ 158 (206)
T 4dzz_A 135 FLITRKIEMAT-MLNVLKESIKDTG 158 (206)
T ss_dssp EEECSBCTTEE-EEHHHHHHHHHHT
T ss_pred EEEeccCCCch-HHHHHHHHHHHcC
Confidence 99999986432 2244566666643
No 147
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=82.53 E-value=0.77 Score=38.89 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=53.5
Q ss_pred CCCEEEEecCCCCCcH------HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCE
Q 023301 29 QFDHIVIETTGLAKPA------PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADR 99 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~------~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ 99 (284)
.....++.++|..... .+.... +. .-..+.+|.|+|+.+....+ .+..|+ ...-+
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~-----~~-~~~~d~vi~V~D~t~~e~~~----------~~~~~l~~~~~p~i 111 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDY-----LL-SQRADSILNVVDATNLERNL----------YLTTQLIETGIPVT 111 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHH-----HH-TTCCSEEEEEEEGGGHHHHH----------HHHHHHHHTCSCEE
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHH-----Hh-cCCCCEEEEEecCCchHhHH----------HHHHHHHhcCCCEE
Confidence 3578899999987653 122211 11 01467899999999865321 123343 45668
Q ss_pred EEEccCCCCChhHH-HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 100 IILNKIDLVTETEL-GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 100 ivlnK~D~~~~~~~-~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+++||+|+.....+ ....++.+.++ .+++.++. .......++
T Consensus 112 lv~NK~Dl~~~~~~~~~~~~l~~~lg--~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 112 IALNMIDVLDGQGKKINVDKLSYHLG--VPVVATSALKQTGVDQVV 155 (272)
T ss_dssp EEEECHHHHHHTTCCCCHHHHHHHHT--SCEEECBTTTTBSHHHHH
T ss_pred EEEEChhhCCcCCcHHHHHHHHHHcC--CCEEEEEccCCCCHHHHH
Confidence 88999998543211 11222233333 56776654 233455544
No 148
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.53 E-value=0.85 Score=35.67 Aligned_cols=96 Identities=14% Similarity=0.105 Sum_probs=47.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh------cCEEEEcc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY------ADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~------Ad~ivlnK 104 (284)
...|++++|......+.... + -..+.++.|+|+.+.... ... ..+..++.. .=+||+||
T Consensus 73 ~~~i~Dt~G~~~~~~~~~~~-----~---~~~d~~i~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~piilv~nK 137 (191)
T 3dz8_A 73 KLQIWDTAGQERYRTITTAY-----Y---RGAMGFILMYDITNEESF-NAV------QDWATQIKTYSWDNAQVILVGNK 137 (191)
T ss_dssp EEEEECHHHHHHCHHHHHHH-----H---TTCCEEEEEEETTCHHHH-HTH------HHHHHHHHHHSCTTCEEEEEEEC
T ss_pred EEEEEeCCChHHHHHHHHHH-----H---ccCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhcCCCCCEEEEEEC
Confidence 45566777743333322221 1 135679999999874332 211 112233322 23677899
Q ss_pred CCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 105 IDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 105 ~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+|+.+... .+..+++.+..+ +++++++. .......++
T Consensus 138 ~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 177 (191)
T 3dz8_A 138 CDMEEERVVPTEKGQLLAEQLG--FDFFEASAKENISVRQAF 177 (191)
T ss_dssp TTCGGGCCSCHHHHHHHHHHHT--CEEEECBTTTTBSHHHHH
T ss_pred CCCccccccCHHHHHHHHHHcC--CeEEEEECCCCCCHHHHH
Confidence 99854321 233444444443 46776653 233444443
No 149
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=82.45 E-value=3.9 Score=31.96 Aligned_cols=69 Identities=13% Similarity=0.236 Sum_probs=37.7
Q ss_pred CCEEEEecCCCCCcHHHH---HHhcccccccceeeeceEEEEEcccch-HHhhhhcCCccchHHHHHHH-----hhcCEE
Q 023301 30 FDHIVIETTGLAKPAPVI---ETFCTDELVSQYVKLDGVITLVDSKHA-MQHLNEVKPRFVVNEAVEQV-----AYADRI 100 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~---~~l~~~~~l~~~~~l~~vv~vvD~~~~-~~~l~~~~~~~~~~~~~~Qi-----~~Ad~i 100 (284)
....+++++|......+. .. .+ -..+.+|.|+|+.+- .+.+.. + .....++ ...=+|
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~-----~~---~~~~~~i~v~d~~~~~~~~~~~-----~-~~~l~~~~~~~~~~piil 134 (196)
T 3llu_A 69 VNFQIWDFPGQMDFFDPTFDYEM-----IF---RGTGALIYVIDAQDDYMEALTR-----L-HITVSKAYKVNPDMNFEV 134 (196)
T ss_dssp CCEEEEECCSSCCTTCTTCCHHH-----HH---HTCSEEEEEEETTSCCHHHHHH-----H-HHHHHHHHHHCTTCEEEE
T ss_pred eEEEEEECCCCHHHHhhhhhccc-----cc---ccCCEEEEEEECCCchHHHHHH-----H-HHHHHHHHhcCCCCcEEE
Confidence 566788888865533221 11 11 136789999999873 111111 1 1112222 233467
Q ss_pred EEccCCCCChhH
Q 023301 101 ILNKIDLVTETE 112 (284)
Q Consensus 101 vlnK~D~~~~~~ 112 (284)
|.||+|+.+++.
T Consensus 135 v~nK~Dl~~~~~ 146 (196)
T 3llu_A 135 FIHKVDGLSDDH 146 (196)
T ss_dssp EEECGGGSCHHH
T ss_pred EEeccccCchhh
Confidence 779999987543
No 150
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=82.22 E-value=5.1 Score=31.83 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=31.4
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
...+++++|......+.... .-..+.++.|+|+.+.... .+....++ ..+.... ...=+||+||+|+.+
T Consensus 83 ~l~l~Dt~G~~~~~~~~~~~--------~~~~d~~i~v~d~~~~~s~-~~~~~~~~-~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 83 HLHIWDTAGQDDYDRLRPLF--------YPDASVLLLCFDVTSPNSF-DNIFNRWY-PEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp EEEEEEC-----------------------CEEEEEEEEETTCHHHH-HHHHHTHH-HHHHHHCSSCCEEEEEECGGGGS
T ss_pred EEEEEECCCchhhhHHHHHH--------hccCCEEEEEEECcCHHHH-HHHHHHHH-HHHHHhCCCCCEEEEEEChhhhc
Confidence 35577888865543322211 1256789999999875432 11100011 1111111 123467889999976
Q ss_pred hhH
Q 023301 110 ETE 112 (284)
Q Consensus 110 ~~~ 112 (284)
...
T Consensus 153 ~~~ 155 (214)
T 2j1l_A 153 DKS 155 (214)
T ss_dssp CHH
T ss_pred cch
Confidence 543
No 151
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=82.10 E-value=0.74 Score=37.05 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=46.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~ 108 (284)
....+++++|......+... . .-..+.++.|+|+...... .+.. .++ ..+.... ...=+||+||+|+.
T Consensus 64 ~~~~i~Dt~G~~~~~~~~~~-----~---~~~~~~~i~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~p~ilv~nK~Dl~ 132 (221)
T 3gj0_A 64 IKFNVWDTAGQEKFGGLRDG-----Y---YIQAQCAIIMFDVTSRVTY-KNVP-NWH-RDLVRVCENIPIVLCGNKVDIK 132 (221)
T ss_dssp EEEEEEEECSGGGTSCCCHH-----H---HTTCCEEEEEEETTCHHHH-HTHH-HHH-HHHHHHSTTCCEEEEEECTTSS
T ss_pred EEEEEEeCCChHHHhHHHHH-----H---HhcCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHhCCCCCEEEEEECCccc
Confidence 34667889985332211111 1 1146789999999885432 2110 111 1112211 22457788999997
Q ss_pred ChhHHHHHHHHHHHhCCCCceeeec
Q 023301 109 TETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
+........++.+..+ .+++.++
T Consensus 133 ~~~~~~~~~~~~~~~~--~~~~~~S 155 (221)
T 3gj0_A 133 DRKVKAKSIVFHRKKN--LQYYDIS 155 (221)
T ss_dssp SCSSCGGGCCHHHHHT--CEEEECB
T ss_pred cccccHHHHHHHHHcC--CEEEEEe
Confidence 6433333333444443 5666654
No 152
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.63 E-value=3.5 Score=32.15 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=46.5
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~ 107 (284)
...+++++|... ..+.... + -..+.++.|+|+.+.... .+.. .+. ..+.... ...=+||+||+|+
T Consensus 77 ~~~l~Dt~G~~~-~~~~~~~-----~---~~~d~iilv~D~~~~~s~-~~~~-~~~-~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 77 SMEILDTAGQED-TIQREGH-----M---RWGEGFVLVYDITDRGSF-EEVL-PLK-NILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp EEEEEECCCCCC-CHHHHHH-----H---HHCSEEEEEEETTCHHHH-HTHH-HHH-HHHHHHHTTSCCCEEEEEECGGG
T ss_pred EEEEEECCCCCc-ccchhhh-----h---ccCCEEEEEEECcCHHHH-HHHH-HHH-HHHHHhhCCCCCcEEEEEECccc
Confidence 356789999877 3222221 1 134678999999875432 2110 011 1112211 1123788899998
Q ss_pred CChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 108 VTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 108 ~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
.+..+ .+..+++.+..+ .++++++
T Consensus 145 ~~~~~v~~~~~~~~~~~~~--~~~~~~S 170 (196)
T 2atv_A 145 DHSRQVSTEEGEKLATELA--CAFYECS 170 (196)
T ss_dssp GGGCCSCHHHHHHHHHHHT--SEEEECC
T ss_pred ccccccCHHHHHHHHHHhC--CeEEEEC
Confidence 65322 234445555543 5666665
No 153
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=81.62 E-value=3.8 Score=32.25 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=39.1
Q ss_pred CEEEEecCCCCCcH------HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 31 DHIVIETTGLAKPA------PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 31 d~iiIE~sG~a~p~------~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
...+++++|..... ....... ...++..-..+.++.|+|+......... .+ ...........+++.||
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~~~~~----~~-~~~~~~~~~~~~~v~nK 146 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRAL-GEYLEKRQSLQGLVVLMDIRHPLKDLDQ----QM-IEWAVDSNIAVLVLLTK 146 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHH-HHHHHHCTTEEEEEEEEETTSCCCHHHH----HH-HHHHHHTTCCEEEEEEC
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHH-HHHHHhhhcccEEEEEEECCCCCchhHH----HH-HHHHHHcCCCeEEEEec
Confidence 46788999986421 1111110 0112222246678899998653211100 01 11123334445677999
Q ss_pred CCCCChhHHHH
Q 023301 105 IDLVTETELGS 115 (284)
Q Consensus 105 ~D~~~~~~~~~ 115 (284)
+|+.+..+.++
T Consensus 147 ~D~~s~~~~~~ 157 (210)
T 1pui_A 147 ADKLASGARKA 157 (210)
T ss_dssp GGGSCHHHHHH
T ss_pred ccCCCchhHHH
Confidence 99988765443
No 154
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=81.23 E-value=2.6 Score=31.68 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=43.4
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D 106 (284)
....+++++|.......+.. ..+ -..+.++.|+|....... .... .++ ..+.... ...=++|.||+|
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~----~~~---~~~d~~i~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~~p~ilv~nK~D 120 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQD----HCL---QTGDAFLIVFSVTDRRSF-SKVP-ETL-LRLRAGRPHHDLPVILVGNKSD 120 (169)
T ss_dssp EEEEEECCCCC--------C----HHH---HHCSEEEEEEETTCHHHH-HTHH-HHH-HHHHHHSTTSCCCEEEEEECTT
T ss_pred EEEEEEECCCccccchhhhh----hhh---ccCCEEEEEEECCChHHH-HHHH-HHH-HHHHhcccCCCCCEEEEeeCcc
Confidence 34567789988765432211 111 125778999999874332 2110 111 1111111 224478889999
Q ss_pred CCChhH--HHHHHHHHHHhCCCCceeeec
Q 023301 107 LVTETE--LGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 107 ~~~~~~--~~~~~~~l~~~np~a~i~~~~ 133 (284)
+.+..+ .+...+..+.. .+++++++
T Consensus 121 l~~~~~~~~~~~~~~~~~~--~~~~~~~S 147 (169)
T 3q85_A 121 LARSREVSLEEGRHLAGTL--SCKHIETS 147 (169)
T ss_dssp CGGGCCSCHHHHHHHHHHT--TCEEEECB
T ss_pred hhhcccCCHHHHHHHHHHc--CCcEEEec
Confidence 864322 23344444444 35666665
No 155
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=81.12 E-value=2.8 Score=39.30 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=47.3
Q ss_pred CCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
..+=||.|+|-.|.. ++...|. .+|++|.||||..-.+--. +.+. ....+....-+++|||+|..
T Consensus 100 ~~iNlIDTPGHvDF~~Ev~raL~---------~~DgAvlVvda~~GV~~qT----~~v~-~~a~~~~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 100 RVVNLLDTPGHQDFSEDTYRVLT---------AVDSALVVIDAAKGVEAQT----RKLM-DVCRMRATPVMTFVNKMDRE 165 (548)
T ss_dssp EEEEEECCCCGGGCSHHHHHHHH---------SCSEEEEEEETTTBSCHHH----HHHH-HHHHHTTCCEEEEEECTTSC
T ss_pred EEEEEEeCCCcHHHHHHHHHHHH---------hcCceEEEeecCCCccccc----HHHH-HHHHHhCCceEEEEecccch
Confidence 345689999999964 4444432 5788999999987543211 0010 11234455668999999985
Q ss_pred ChhHHHHHHHHHHH
Q 023301 109 TETELGSLTERIKH 122 (284)
Q Consensus 109 ~~~~~~~~~~~l~~ 122 (284)
.. +..++.+.++.
T Consensus 166 ~a-d~~~~~~~i~~ 178 (548)
T 3vqt_A 166 AL-HPLDVMADIEQ 178 (548)
T ss_dssp CC-CHHHHHHHHHH
T ss_pred hc-chhHhhhhhhh
Confidence 43 34444444544
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=80.81 E-value=5.7 Score=37.61 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=52.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
...-||+|+|-.+....... .+ -..+.+|.|+|+..-... .. ...... .......-++++||+|+.+
T Consensus 71 ~~l~liDTPGh~dF~~ev~~-----~l---~~aD~aILVVDa~~gv~~-qt---~~~~~~-~~~~~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 71 YQLNFIDTPGHVDFSYEVSR-----SL---AACEGALLVVDAGQGVEA-QT---LANCYT-AMEMDLEVVPVLNKIDLPA 137 (599)
T ss_dssp EEEEEEECCCCGGGHHHHHH-----HH---HHCSEEEEEEETTTCCCT-HH---HHHHHH-HHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEECCCchHHHHHHHH-----HH---HHCCEEEEEEECCCCCCH-HH---HHHHHH-HHHCCCCEEEeeeccCccc
Confidence 34569999999886543322 11 235789999999763211 00 000000 1122334588999999976
Q ss_pred hhHHHHHHHHHHHhC--CCCceeeecc-CCCChhhhh
Q 023301 110 ETELGSLTERIKHIN--AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 110 ~~~~~~~~~~l~~~n--p~a~i~~~~~-g~v~~~~l~ 143 (284)
.. ..++.+.++... +..+++.++. .......++
T Consensus 138 a~-~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll 173 (599)
T 3cb4_D 138 AD-PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVL 173 (599)
T ss_dssp CC-HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHH
T ss_pred cc-HHHHHHHHHHHhCCCcceEEEeecccCCCchhHH
Confidence 43 333444444432 1234555543 334444444
No 157
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=80.71 E-value=5 Score=35.86 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=23.6
Q ss_pred hhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeec
Q 023301 95 AYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 95 ~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~ 133 (284)
...-++|+||+|+...+.+..+.+..... .++++..+
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~--~~~vv~iS 250 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKR--GYIVIPTS 250 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHT--TCEEEEEC
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhc--CCcEEEEe
Confidence 35679999999998655555555544322 35666554
No 158
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=80.66 E-value=8.2 Score=29.77 Aligned_cols=70 Identities=19% Similarity=0.118 Sum_probs=37.1
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
...+++++|......+... . .-..+.++.|+|+.+.... .+....++ ..+.... ...=+||+||+|+.+
T Consensus 67 ~~~i~D~~G~~~~~~~~~~-----~---~~~~d~~i~v~d~~~~~s~-~~~~~~~~-~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 67 LLGLYDTAGQEDYDRLRPL-----S---YPMTDVFLICFSVVNPASF-QNVKEEWV-PELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp EEEEECCCCSSSSTTTGGG-----G---CTTCSEEEEEEETTCHHHH-HHHHHTHH-HHHHHHSTTCCEEEEEECTTSTT
T ss_pred EEEEEECCCCcchhHHHHH-----h---cCCCCEEEEEEECCCHHHH-HHHHHHHH-HHHHHhCCCCCEEEEEEChhhcc
Confidence 3467788887664432211 1 1246789999999875432 11100111 1112111 223478889999976
Q ss_pred h
Q 023301 110 E 110 (284)
Q Consensus 110 ~ 110 (284)
.
T Consensus 137 ~ 137 (194)
T 2atx_A 137 D 137 (194)
T ss_dssp C
T ss_pred c
Confidence 4
No 159
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=80.65 E-value=3 Score=35.73 Aligned_cols=97 Identities=14% Similarity=0.114 Sum_probs=49.2
Q ss_pred CCEEEEecCCCCCcHHHH-HHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-----hhcCEEEEc
Q 023301 30 FDHIVIETTGLAKPAPVI-ETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-----AYADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~-~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-----~~Ad~ivln 103 (284)
....+++++|.....+-. ..+. ...+ -..+.+|.|+|+.+.... .+.. .+ .....++ ...=+||+|
T Consensus 52 ~~l~i~Dt~G~~~~~~~~~~~~~-~~~~---~~ad~vi~V~D~t~~~s~-~~l~-~~--~~~l~~l~~~~~~~piilv~N 123 (307)
T 3r7w_A 52 MTLNLWDCGGQDVFMENYFTKQK-DHIF---QMVQVLIHVFDVESTEVL-KDIE-IF--AKALKQLRKYSPDAKIFVLLH 123 (307)
T ss_dssp EEEEEEEECCSHHHHHHHHTTTH-HHHH---TTCSEEEEEEETTCSCHH-HHHH-HH--HHHHHHHHHHCTTCEEEEEEE
T ss_pred eEEEEEECCCcHHHhhhhhhhHH-HHHh---ccCCEEEEEEECCChhhH-HHHH-HH--HHHHHHHHHhCCCCeEEEEEe
Confidence 356678889965431100 1110 0111 146789999999875321 1100 00 0112222 234567779
Q ss_pred cCCCCChhHHH--------HHHHHHHHhC-CCCceeeecc
Q 023301 104 KIDLVTETELG--------SLTERIKHIN-AMAPVKLAKY 134 (284)
Q Consensus 104 K~D~~~~~~~~--------~~~~~l~~~n-p~a~i~~~~~ 134 (284)
|+|+.++++.. .+.++.+.++ |..+++.++.
T Consensus 124 K~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa 163 (307)
T 3r7w_A 124 KMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSI 163 (307)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCT
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeee
Confidence 99998854443 3344444443 2477887764
No 160
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=80.46 E-value=3.5 Score=31.96 Aligned_cols=89 Identities=8% Similarity=0.075 Sum_probs=44.4
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-----hhcCEEEEccCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-----AYADRIILNKID 106 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-----~~Ad~ivlnK~D 106 (284)
..|++++|......+.. . + -..+.++.|+|..+.... .+.. .++ ..+.... ...=+||.||+|
T Consensus 71 l~i~Dt~G~~~~~~~~~-~-----~---~~~~~~ilv~d~~~~~s~-~~~~-~~~-~~i~~~~~~~~~~~piilv~nK~D 138 (187)
T 3c5c_A 71 LRVMDTADLDTPRNCER-Y-----L---NWAHAFLVVYSVDSRQSF-DSSS-SYL-ELLALHAKETQRSIPALLLGNKLD 138 (187)
T ss_dssp EEEEECCC---CCCTHH-H-----H---TTCSEEEEEEETTCHHHH-HHHH-HHH-HHHHHHHHHHCCCCCEEEEEECGG
T ss_pred EEEEECCCCCcchhHHH-H-----H---hhCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHHhhccCCCCCEEEEEECcc
Confidence 44678888765443211 1 1 135678999999864332 2110 111 1222221 223477889999
Q ss_pred CCChhH--HHHHHHHHHHhCCCCceeeecc
Q 023301 107 LVTETE--LGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 107 ~~~~~~--~~~~~~~l~~~np~a~i~~~~~ 134 (284)
+.+..+ .+...++.+.++ +++++++.
T Consensus 139 l~~~~~v~~~~~~~~~~~~~--~~~~e~Sa 166 (187)
T 3c5c_A 139 MAQYRQVTKAEGVALAGRFG--CLFFEVSA 166 (187)
T ss_dssp GGGGCSSCHHHHHHHHHHHT--CEEEECCS
T ss_pred hhhcCccCHHHHHHHHHHcC--CcEEEEee
Confidence 854322 244555556554 46766653
No 161
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=80.21 E-value=2.1 Score=39.28 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=50.6
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-------hhcCEEEE
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-------AYADRIIL 102 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-------~~Ad~ivl 102 (284)
....|+++.|.-....+.. ..+ -..+.+|.|+|+...... .+. .....++ ...=+||+
T Consensus 366 ~~~~l~Dt~G~~~~~~~~~-----~~~---~~ad~~i~V~D~~~~~s~-~~~------~~~~~~~~~~~~~~~~p~ilv~ 430 (497)
T 3lvq_E 366 VKFNVWDVGGQDKIRPLWR-----HYY---TGTQGLIFVVDCADRDRI-DEA------RQELHRIINDREMRDAIILIFA 430 (497)
T ss_dssp CEEEEEEECCCGGGSGGGG-----GGG---TTCCEEEEEEETTCGGGH-HHH------HHHHHHHHTSGGGTTCEEEEEE
T ss_pred EEEEEEECCCcHHHHHHHH-----HHh---ccCCEEEEEEECcchhHH-HHH------HHHHHHHhhhhhcCCCcEEEEE
Confidence 4567889999544333211 111 246789999999874321 110 1111222 12346888
Q ss_pred ccCCCCChhHHHHHHHHHHHh---CCCCceeeecc-CCCChhhhh
Q 023301 103 NKIDLVTETELGSLTERIKHI---NAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l~~~---np~a~i~~~~~-g~v~~~~l~ 143 (284)
||+|+.+......+.+.+... ....+++.++. ....+..++
T Consensus 431 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 475 (497)
T 3lvq_E 431 NKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 475 (497)
T ss_dssp ECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHH
T ss_pred ECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHH
Confidence 999997654444454443311 12234666653 233444444
No 162
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=79.94 E-value=0.63 Score=34.96 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=37.9
Q ss_pred CEEEEecCCCCCcHH----HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 31 DHIVIETTGLAKPAP----VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 31 d~iiIE~sG~a~p~~----i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
...+++++|...... +..... .. .-..+.++.|+|+.+....... .+ .....+....-++|+||+|
T Consensus 50 ~~~l~Dt~G~~~~~~~~~~~~~~~~--~~---~~~~~~~i~v~d~~~~~~~~~~----~~-~~~~~~~~~p~ilv~nK~D 119 (161)
T 2dyk_A 50 RFLLVDTGGLWSGDKWEKKIQEKVD--RA---LEDAEVVLFAVDGRAELTQADY----EV-AEYLRRKGKPVILVATKVD 119 (161)
T ss_dssp EEEEEECGGGCSSSSCCHHHHHHHH--HH---TTTCSEEEEEEESSSCCCHHHH----HH-HHHHHHHTCCEEEEEECCC
T ss_pred eEEEEECCCCCCccchHHHHHHHHH--HH---HHhCCEEEEEEECCCcccHhHH----HH-HHHHHhcCCCEEEEEECcc
Confidence 567889999887321 111110 01 1245678999999873221110 11 1122233445688889999
Q ss_pred CCCh
Q 023301 107 LVTE 110 (284)
Q Consensus 107 ~~~~ 110 (284)
+.+.
T Consensus 120 l~~~ 123 (161)
T 2dyk_A 120 DPKH 123 (161)
T ss_dssp SGGG
T ss_pred cccc
Confidence 9654
No 163
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=79.54 E-value=6.7 Score=30.35 Aligned_cols=101 Identities=11% Similarity=0.116 Sum_probs=50.4
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCCh
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVTE 110 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~~ 110 (284)
..+++++|......+.. .. .-..+.+|.|+|+...... .+....+ ...+.... ...=+||.||+|+.++
T Consensus 73 ~~i~Dt~G~~~~~~~~~-----~~---~~~~d~~i~v~d~~~~~s~-~~~~~~~-~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 73 LHLWDTAGQEEYDRLRP-----LS---YADSDVVLLCFAVNNRTSF-DNISTKW-EPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EEEEEECCSGGGTTTGG-----GG---CTTCSEEEEEEETTCHHHH-HHHHHTH-HHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred EEEEECCCcHHHHHHhH-----hh---ccCCcEEEEEEECCCHHHH-HHHHHHH-HHHHHHhCCCCCEEEEEEChhhccC
Confidence 36889998543322111 11 1246789999999875432 2110011 11112111 1234778899998643
Q ss_pred ----hHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 111 ----TELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 111 ----~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
...+...+..+.++- ..+++++. .......++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 179 (194)
T 3reg_A 143 GSDDVTKQEGDDLCQKLGC-VAYIEASSVAKIGLNEVF 179 (194)
T ss_dssp TTTCCCHHHHHHHHHHHTC-SCEEECBTTTTBSHHHHH
T ss_pred CCCcccHHHHHHHHHhcCC-CEEEEeecCCCCCHHHHH
Confidence 223455555555542 22666553 334455544
No 164
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=79.28 E-value=14 Score=31.58 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=52.8
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhccc-ccccce--eeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEc
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTD-ELVSQY--VKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILN 103 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~-~~l~~~--~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivln 103 (284)
.++|+|||.++|...-. .+++.+..- ..+... -.-+.++.|+|+.+-.+.+... ..+ .+-...+-+|+|
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~~l~~a------~~~-~~~~~i~gvVlT 257 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQA------KIF-KEAVNVTGIILT 257 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHH------HHH-HHHSCCCEEEEE
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHHH------HHH-HhcCCCCEEEEe
Confidence 68999999999985433 222222110 011000 1245678899997543332210 111 222345678999
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCceeeeccCCC
Q 023301 104 KIDLVTETELGSLTERIKHINAMAPVKLAKYGSV 137 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v 137 (284)
|.|.... ...+.......+ .||.....|+-
T Consensus 258 k~D~~~~--gG~~l~~~~~~~--~Pi~~i~~Ge~ 287 (306)
T 1vma_A 258 KLDGTAK--GGITLAIARELG--IPIKFIGVGEK 287 (306)
T ss_dssp CGGGCSC--TTHHHHHHHHHC--CCEEEEECSSS
T ss_pred CCCCccc--hHHHHHHHHHHC--CCEEEEeCCCC
Confidence 9997432 233455555554 56666666643
No 165
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=79.01 E-value=6.5 Score=32.44 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=41.8
Q ss_pred eeceEEEEEcccchH-HhhhhcCCccchHHHHHH---HhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeecc-C
Q 023301 61 KLDGVITLVDSKHAM-QHLNEVKPRFVVNEAVEQ---VAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKY-G 135 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~-~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~-g 135 (284)
..+.+|.|+|+.+.. ..+.+. ..++ ..+... -...=+||.||+|+.+...++..+++.+.. ...++++++. .
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~-~~~l-~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~e~SAk~ 238 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQ-LKFV-SNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSK-KNLQVVETSARS 238 (255)
T ss_dssp ECCEEEEEEECBC----CHHHH-HHHH-HHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTS-SSCCEEECBTTT
T ss_pred cCCEEEEEEECCCCchhhHHHH-HHHH-HHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhc-CCCeEEEEECCC
Confidence 479999999997630 111111 0111 112222 123447788999998766665555554432 2467776653 2
Q ss_pred CCChhhhh
Q 023301 136 SVDMDFVL 143 (284)
Q Consensus 136 ~v~~~~l~ 143 (284)
......++
T Consensus 239 g~gv~elf 246 (255)
T 3c5h_A 239 NVNVDLAF 246 (255)
T ss_dssp TBSHHHHH
T ss_pred CCCHHHHH
Confidence 33444443
No 166
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=78.84 E-value=1.2 Score=34.59 Aligned_cols=90 Identities=19% Similarity=0.151 Sum_probs=45.9
Q ss_pred CCEEEEecCCCCCcHHH--HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEcc
Q 023301 30 FDHIVIETTGLAKPAPV--IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNK 104 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i--~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK 104 (284)
....+++++|....... .+.+.. ..+. .-..+.++.|+|+.++.... .+..++ ...-++|.||
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~v~d~~~~~~~~----------~~~~~~~~~~~piilv~nK 121 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIAR-DYII-NEKPDLVVNIVDATALERNL----------YLTLQLMEMGANLLLALNK 121 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHH-HHHH-HHCCSEEEEEEEGGGHHHHH----------HHHHHHHTTTCCEEEEEEC
T ss_pred cEEEEEECCCcCccccccHHHHHHH-HHHh-ccCCCEEEEEecchhHHHHH----------HHHHHHHhcCCCEEEEEEh
Confidence 34678899998765310 111110 0111 01356789999998865321 112233 3345788899
Q ss_pred CCCCChhHH-HHHHHHHHHhCCCCceeeec
Q 023301 105 IDLVTETEL-GSLTERIKHINAMAPVKLAK 133 (284)
Q Consensus 105 ~D~~~~~~~-~~~~~~l~~~np~a~i~~~~ 133 (284)
+|+.+...+ ....+..+.++ .+++.++
T Consensus 122 ~Dl~~~~~~~~~~~~~~~~~~--~~~~~~S 149 (188)
T 2wjg_A 122 MDLAKSLGIEIDVDKLEKILG--VKVVPLS 149 (188)
T ss_dssp HHHHHHTTCCCCHHHHHHHHT--SCEEECB
T ss_pred hhccccccchHHHHHHHHHhC--CCeEEEE
Confidence 998543211 12233333343 4666665
No 167
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=78.57 E-value=1.4 Score=39.83 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=50.5
Q ss_pred CEEEEecCCCCCcHHHH-HHhccccc---ccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 31 DHIVIETTGLAKPAPVI-ETFCTDEL---VSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~-~~l~~~~~---l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
++.++.|.|+.....+. +.+..-.. +...-..+.++.|+|+..-.... + ..+ .........+-++|+||+|
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~-~---~~i-~~~l~~~~~~~ilv~NK~D 303 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQ-D---QRM-AGLMERRGRASVVVFNKWD 303 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHH-H---HHH-HHHHHHTTCEEEEEEECGG
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHH-H---HHH-HHHHHHcCCCEEEEEECcc
Confidence 45566888875443322 11110000 11111346788899987532110 0 011 1112334556788999999
Q ss_pred CCChhH--HHHHHHHHHHhC---CCCceeeecc-CCCChhhhh
Q 023301 107 LVTETE--LGSLTERIKHIN---AMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 107 ~~~~~~--~~~~~~~l~~~n---p~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+..+ .+.+.+.++... ..++++.++. .......++
T Consensus 304 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 346 (439)
T 1mky_A 304 LVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMI 346 (439)
T ss_dssp GSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHH
Confidence 986543 455555554332 4577776653 233444444
No 168
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=78.30 E-value=3.2 Score=32.65 Aligned_cols=74 Identities=12% Similarity=0.008 Sum_probs=39.1
Q ss_pred eeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEccCCCCChhH--HHHHHHHHHHhCCCCceeee
Q 023301 61 KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNKIDLVTETE--LGSLTERIKHINAMAPVKLA 132 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK~D~~~~~~--~~~~~~~l~~~np~a~i~~~ 132 (284)
..+.+|.|+|+.+.... .+. .....++. ..=+||+||+|+.+..+ .....++.+.. ..+++.+
T Consensus 97 ~~d~~i~v~d~~~~~s~-~~~------~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~ 167 (200)
T 2o52_A 97 GAAGALLVYDITSRETY-NSL------AAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN--ELMFLET 167 (200)
T ss_dssp TCSEEEEEEETTCHHHH-HTH------HHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT--TCEEEEE
T ss_pred cCCEEEEEEECcCHHHH-HHH------HHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc--CCEEEEE
Confidence 46789999999875432 111 11122221 22378889999864322 23444444443 3567766
Q ss_pred cc-CCCChhhhh
Q 023301 133 KY-GSVDMDFVL 143 (284)
Q Consensus 133 ~~-g~v~~~~l~ 143 (284)
+. .......++
T Consensus 168 SA~~g~gi~~l~ 179 (200)
T 2o52_A 168 SALTGENVEEAF 179 (200)
T ss_dssp CTTTCTTHHHHH
T ss_pred eCCCCCCHHHHH
Confidence 53 233444444
No 169
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=77.78 E-value=3.2 Score=32.78 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=37.5
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCCh
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVTE 110 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~~ 110 (284)
..+++++|......+... . .-..+.++.|+|+.+.... .+....+ ...+.... ...=+||+||+|+.+.
T Consensus 80 l~i~Dt~G~~~~~~~~~~-----~---~~~~d~~i~v~d~~~~~s~-~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 80 LGLWDTAGLEDYDRLRPL-----S---YPQTDVFLICFSLVSPASF-ENVRAKW-YPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp EEEEEECCSGGGTTTGGG-----G---CTTCSEEEEEEETTCHHHH-HHHHHTH-HHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred EEEEECCCchhhHHHHHH-----H---hccCCEEEEEEECCCHHHH-HHHHHHH-HHHHHHhCCCCCEEEEEechhhccc
Confidence 448899997543322111 1 1256889999999875432 1110001 11111111 2344788899999765
Q ss_pred hH
Q 023301 111 TE 112 (284)
Q Consensus 111 ~~ 112 (284)
..
T Consensus 150 ~~ 151 (204)
T 4gzl_A 150 KD 151 (204)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 170
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=77.66 E-value=28 Score=28.63 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=50.2
Q ss_pred HHHHHHHhhcCCCCEEEEecCC-CCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHH-HHHHh
Q 023301 18 MLLQLAKKKQGQFDHIVIETTG-LAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEA-VEQVA 95 (284)
Q Consensus 18 ~l~~l~~~~~~~~d~iiIE~sG-~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~-~~Qi~ 95 (284)
.|.+.++.-..+.|+||||.+| +..|.. +.. ....+...+.. .||.|+|+..-. +.... ..+ ..+ ...+.
T Consensus 120 ~I~~~~~~l~~~~D~vlIEGagGl~~pl~--~~~-~~adlA~~l~~-pVILV~~~~lg~--i~~~~-lt~-~~l~~~g~~ 191 (242)
T 3qxc_A 120 NLTQRLHNFTKTYDLVIVEGAGGLCVPIT--LEE-NMLDFALKLKA-KMLLISHDNLGL--INDCL-LND-FLLKSHQLD 191 (242)
T ss_dssp HHHHHHHHGGGTCSEEEEECCSCTTCBSS--SSC-BHHHHHHHHTC-EEEEEECCSTTH--HHHHH-HHH-HHHHTSSSC
T ss_pred HHHHHHHHHHhcCCEEEEECCCCcccccc--ccc-hHHHHHHHcCC-CEEEEEcCCCcH--HHHHH-HHH-HHHHhCCCC
Confidence 3444443223578999999875 444521 000 00111111222 489999997531 22110 000 111 12233
Q ss_pred hcCEEEEccCCCCChhHHHHHHHHHHHhC--CCCceeee
Q 023301 96 YADRIILNKIDLVTETELGSLTERIKHIN--AMAPVKLA 132 (284)
Q Consensus 96 ~Ad~ivlnK~D~~~~~~~~~~~~~l~~~n--p~a~i~~~ 132 (284)
--||+|+.+... ...+.+.-++.+.+ +..+++..
T Consensus 192 --~GvIlN~v~~~~-~~~~~~~p~le~~~~~~~~~~~~~ 227 (242)
T 3qxc_A 192 --YKIAINLKGNNT-AFHSISLPYIELFNTRSNNPIVIF 227 (242)
T ss_dssp --EEEEECCCTTCC-HHHHHTHHHHHHHHHHCSSCCEEG
T ss_pred --EEEEEeCCCCcc-chhhhhHHHHHHhcCcccCCceec
Confidence 468899998643 33445556666554 55666543
No 171
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=76.95 E-value=4.1 Score=30.99 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=34.9
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCCh
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVTE 110 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~~ 110 (284)
..+++++|......+... .+ -..+.++.|+|+.+.... .+....+ ...+.... ...=++|+||+|+.+.
T Consensus 58 ~~i~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~-~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 58 LGLWDTAGQEDYNRLRPL-----SY---RGADVFILAFSLISKASY-ENVSKKW-IPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp CEEECCCC-CTTTTTGGG-----GG---TTCSEEEEEEETTCHHHH-HHHHHTH-HHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred EEEEECCCChhhhhhHHh-----hc---cCCCEEEEEEECCCHHHH-HHHHHHH-HHHHHHhCCCCCEEEEEechhhhcC
Confidence 347788886543321111 11 236789999999775432 1110001 11111111 2334778899998654
Q ss_pred h
Q 023301 111 T 111 (284)
Q Consensus 111 ~ 111 (284)
.
T Consensus 128 ~ 128 (182)
T 3bwd_D 128 K 128 (182)
T ss_dssp H
T ss_pred c
Confidence 3
No 172
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=76.86 E-value=3.2 Score=36.34 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=39.5
Q ss_pred CCCEEEEecCCCCCc------HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCE
Q 023301 29 QFDHIVIETTGLAKP------APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADR 99 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p------~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ 99 (284)
.++..||.++|+... ..+...+.. -...-.-..+.+|.|+|+.+.... . ... ..+..++. ..-+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~-~~~~~i~~~d~iilvv~~~~~~~~--~--~~~--~~l~~~~~~~~~~~i 207 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIEN-MVRSYIEKPNCIILAISPANQDLA--T--SDA--IKISREVDPSGDRTF 207 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHH-HHHHHHHSSSEEEEEEEETTSCGG--G--CHH--HHHHHHSCTTCTTEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHH-HHHHHhhcCCeEEEEeecccCCcC--C--HHH--HHHHHHhcccCCCEE
Confidence 467899999999874 222211110 000001134567888887552211 0 000 11234443 2467
Q ss_pred EEEccCCCCChh
Q 023301 100 IILNKIDLVTET 111 (284)
Q Consensus 100 ivlnK~D~~~~~ 111 (284)
+|+||+|+++..
T Consensus 208 ~V~nK~Dl~~~~ 219 (360)
T 3t34_A 208 GVLTKIDLMDKG 219 (360)
T ss_dssp EEEECGGGCCTT
T ss_pred EEEeCCccCCCc
Confidence 889999998654
No 173
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=76.37 E-value=6.7 Score=30.12 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=39.1
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHH---HhhcCEEEEccCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQ---VAYADRIILNKID 106 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Q---i~~Ad~ivlnK~D 106 (284)
....+++++|......+.... + -..+.++.|+|+...... .+.. .++ ..+..+ -...=+||.||+|
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~-----~---~~~~~~i~v~d~~~~~s~-~~~~-~~~-~~~~~~~~~~~~piilv~NK~D 128 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSY-----F---ENTDILIYVIDSADRKRF-EETG-QEL-TELLEEEKLSCVPVLIFANKQD 128 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHH-----H---TTCSEEEEEEETTCGGGH-HHHH-HHH-HHHTTCGGGTTCCEEEEEECTT
T ss_pred EEEEEEECCCCHHHHHHHHHH-----h---CCCCEEEEEEECcCHHHH-HHHH-HHH-HHHHhChhhcCCCEEEEEECcC
Confidence 345677888876544432221 1 135778999998764321 1100 000 011111 1123467889999
Q ss_pred CCChhHHHHHHH
Q 023301 107 LVTETELGSLTE 118 (284)
Q Consensus 107 ~~~~~~~~~~~~ 118 (284)
+.+....+.+.+
T Consensus 129 l~~~~~~~~~~~ 140 (181)
T 1fzq_A 129 LLTAAPASEIAE 140 (181)
T ss_dssp STTCCCHHHHHH
T ss_pred cccCCCHHHHHH
Confidence 976544444433
No 174
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=75.51 E-value=1.4 Score=35.70 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=50.8
Q ss_pred CCEEEEecCCCCCcHH-----H-HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-----hhcC
Q 023301 30 FDHIVIETTGLAKPAP-----V-IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-----AYAD 98 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~-----i-~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-----~~Ad 98 (284)
....|++++|..+... + ...+. . + ....+.+|.|+|+...... .. ... ..+..++ ...-
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~--~-~--~~~~d~~i~v~d~~~~~s~-~~--~~~--~~~~~~l~~~~~~~pi 145 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTIT--A-L--AHINGVILFIIDISEQCGL-TI--KEQ--INLFYSIKSVFSNKSI 145 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHH--H-H--HTSSEEEEEEEETTCTTSS-CH--HHH--HHHHHHHHTCC-CCCE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHH--H-h--hccccEEEEEEecccccCc-ch--HHH--HHHHHHHHHhhcCCcE
Confidence 4568899999964210 0 11111 0 1 1123578999999763221 00 000 1123333 2345
Q ss_pred EEEEccCCCCChhHH-----HHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 99 RIILNKIDLVTETEL-----GSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 99 ~ivlnK~D~~~~~~~-----~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
++|+||+|+.+..++ ..+.+..+..++..++++++. .......++
T Consensus 146 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 196 (228)
T 2qu8_A 146 VIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAK 196 (228)
T ss_dssp EEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHH
T ss_pred EEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHH
Confidence 788899999764332 233333443434467776653 233444444
No 175
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=75.39 E-value=5 Score=31.63 Aligned_cols=102 Identities=14% Similarity=0.051 Sum_probs=50.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
...+++++|......+... . .-..+.+|.|+|+.+.... .+....++ ..+.... ...=+||+||+|+.+
T Consensus 58 ~~~i~Dt~G~~~~~~~~~~-----~---~~~~d~~ilv~d~~~~~s~-~~~~~~~~-~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 58 NLGLWDTAGQEDYSRLRPL-----S---YRGADIFVLAFSLISKASY-ENVLKKWM-PELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp EEEEECCCCCCCCCC--CG-----G---GTTCSEEEEEEETTCHHHH-HHHHHTHH-HHHHHHCTTCCEEEEEECHHHHT
T ss_pred EEEEEECCCcHHHHHHHHh-----h---ccCCCEEEEEEECCCHHHH-HHHHHHHH-HHHHHhCCCCCEEEEEeCHHhhh
Confidence 4556788887554332211 1 1246789999999875432 11100011 1111111 233478889999865
Q ss_pred hhH----------HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 110 ETE----------LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 110 ~~~----------~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
... .+...++.+.++ ..++++++. .......++
T Consensus 128 ~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~Sa~~g~gi~~l~ 171 (212)
T 2j0v_A 128 DKGYLADHTNVITSTQGEELRKQIG-AAAYIECSSKTQQNVKAVF 171 (212)
T ss_dssp CHHHHHTCSSCCCHHHHHHHHHHHT-CSEEEECCTTTCTTHHHHH
T ss_pred CccccccccCCCCHHHHHHHHHHcC-CceEEEccCCCCCCHHHHH
Confidence 432 344455555554 236666653 233455444
No 176
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=75.05 E-value=4.5 Score=31.80 Aligned_cols=100 Identities=14% Similarity=0.177 Sum_probs=48.2
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH--hhcCEEEEccCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV--AYADRIILNKIDLV 108 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi--~~Ad~ivlnK~D~~ 108 (284)
...|++++|......+... . .-..+.+|.|+|+...... .... .++ ..+.... ...=+||+||+|+.
T Consensus 70 ~~~l~Dt~G~~~~~~~~~~-----~---~~~~d~ii~v~d~~~~~s~-~~~~-~~~-~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 70 KLQLWDTAGQERFRTITTA-----Y---YRGAMGIILVYDVTDERTF-TNIK-QWF-KTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEECCTTGGGGTCCCHH-----H---HTTCSEEEEEEETTCHHHH-HTHH-HHH-HHHHHHTTTCSEEEEEEECTTCS
T ss_pred EEEEEeCCCcHHHHHHHHH-----H---hccCCEEEEEEECCCHHHH-HHHH-HHH-HHHHHhcCCCCCEEEEEECCCCc
Confidence 4577788885433221111 1 1246789999999875431 1110 011 1111111 12347888999984
Q ss_pred Chh-HHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 109 TET-ELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 109 ~~~-~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
... ..+...++.+..+ .+++.++. .......++
T Consensus 139 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~ 173 (213)
T 3cph_A 139 TRVVTADQGEALAKELG--IPFIESSAKNDDNVNEIF 173 (213)
T ss_dssp SCCSCHHHHHHHHHHHT--CCEEECBTTTTBSSHHHH
T ss_pred ccccCHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 321 1233444444443 46776653 223344443
No 177
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=75.01 E-value=4.3 Score=36.62 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=24.8
Q ss_pred hhcCEEEEccCCCCChhH--HHHHHHHHHHhC---CCCceeeecc
Q 023301 95 AYADRIILNKIDLVTETE--LGSLTERIKHIN---AMAPVKLAKY 134 (284)
Q Consensus 95 ~~Ad~ivlnK~D~~~~~~--~~~~~~~l~~~n---p~a~i~~~~~ 134 (284)
..+=+||+||+|+.+..+ .+++.+.+++.. ..++++.++.
T Consensus 286 ~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA 330 (436)
T 2hjg_A 286 GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA 330 (436)
T ss_dssp TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCT
T ss_pred CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEec
Confidence 345588889999976543 345555555433 3567776653
No 178
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=74.83 E-value=4.1 Score=34.25 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=33.9
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCE----EEEc
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADR----IILN 103 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~----ivln 103 (284)
..+|+|||+++++....... .+. -..+.+|.|+.+...... . .....++++.+.+ +|+|
T Consensus 190 ~~yD~VIIDtpp~~~~~d~~-~l~--------~~aD~vilVv~~~~~~~~--~------~~~~~~~l~~~~~~~~GvVlN 252 (271)
T 3bfv_A 190 MNYNFVIIDTPPVNTVTDAQ-LFS--------KFTGNVVYVVNSENNNKD--E------VKKGKELIEATGAKLLGVVLN 252 (271)
T ss_dssp HHCSEEEEECCCTTTCSHHH-HHH--------HHHCEEEEEEETTSCCHH--H------HHHHHHHHHTTTCEEEEEEEE
T ss_pred hCCCEEEEeCCCCchHHHHH-HHH--------HHCCEEEEEEeCCCCcHH--H------HHHHHHHHHhCCCCEEEEEEe
Confidence 35789999988875532211 111 013457888877653321 0 1223455554432 7788
Q ss_pred cCCC
Q 023301 104 KIDL 107 (284)
Q Consensus 104 K~D~ 107 (284)
+.+.
T Consensus 253 ~~~~ 256 (271)
T 3bfv_A 253 RMPK 256 (271)
T ss_dssp EECC
T ss_pred CCcC
Confidence 8875
No 179
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=74.71 E-value=35 Score=28.19 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCCCCEEEEecCC-CCCcHHHHHH-hcccccccceeeeceEEEEEcccc
Q 023301 17 KMLLQLAKKKQGQFDHIVIETTG-LAKPAPVIET-FCTDELVSQYVKLDGVITLVDSKH 73 (284)
Q Consensus 17 ~~l~~l~~~~~~~~d~iiIE~sG-~a~p~~i~~~-l~~~~~l~~~~~l~~vv~vvD~~~ 73 (284)
+.+.+.++.-..+.|+||||.+| +..|.. +. +. ...+...+. ..||.|+|+..
T Consensus 114 ~~i~~~~~~l~~~~D~vlIEGagGl~~pl~--~~~~~-~adla~~l~-~pVILV~~~~~ 168 (251)
T 3fgn_A 114 DQIVRLIADLDRPGRLTLVEGAGGLLVELA--EPGVT-LRDVAVDVA-AAALVVVTADL 168 (251)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSSSTTCEEE--TTTEE-HHHHHHHTT-CEEEEEECSST
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCCcCCcC--cccch-HHHHHHHcC-CCEEEEEcCCC
Confidence 34555554324579999999885 344411 00 00 001111122 25899999975
No 180
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=74.64 E-value=24 Score=29.47 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch
Q 023301 19 LLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 19 l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
+.++++.-+..+|+|||++++....... ..+. ..+.+|.++.+...
T Consensus 144 l~~~l~~l~~~yD~IiiD~pp~~~~~~~-~~l~---------~aD~viiv~~~~~~ 189 (298)
T 2oze_A 144 LATLLAPLKSDYDLIIIDTVPTPSVYTN-NAIV---------ASDYVMIPLQAEEE 189 (298)
T ss_dssp HHHHHGGGGGGCSEEEEEECSSCSHHHH-HHHH---------HCSEEEEEECGGGC
T ss_pred HHHHHHHHhcCCCEEEEECCCCccHHHH-HHHH---------HCCeEEEEecCcHH
Confidence 5555543235799999999987765332 2221 24668889888764
No 181
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=74.06 E-value=5.2 Score=31.85 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=35.4
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
...|++++|......+... .+ -..+.+|.|+|+.+.... .+....++ ..+.... ...=+||.||+|+.+
T Consensus 76 ~l~i~Dt~G~~~~~~~~~~-----~~---~~~d~~i~v~d~~~~~s~-~~~~~~~~-~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 76 ELSLWDTSGSPYYDNVRPL-----CY---SDSDAVLLCFDISRPETV-DSALKKWR-TEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp EEEEEEECCSGGGTTTGGG-----GC---TTCSEEEEEEETTCTHHH-HHHHTHHH-HHHHHHCTTSEEEEEEECGGGGG
T ss_pred EEEEEECCCCHhHHHHHHH-----Hc---CCCeEEEEEEECcCHHHH-HHHHHHHH-HHHHHhCCCCCEEEEEEChhhcc
Confidence 4557788886443322111 11 246789999999875432 21001111 1111211 223467779999854
No 182
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=73.84 E-value=4.4 Score=38.38 Aligned_cols=99 Identities=15% Similarity=0.217 Sum_probs=52.5
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCCh
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTE 110 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~ 110 (284)
..-||+|+|-.+....... .+ -..+.+|.|||+..-... .. ..... ........-++++||+|+.+.
T Consensus 74 ~inliDTPGh~dF~~ev~r-----~l---~~aD~aILVVDa~~gv~~-qt---~~~~~-~a~~~~ipiIvviNKiDl~~a 140 (600)
T 2ywe_A 74 KLHLIDTPGHVDFSYEVSR-----AL---AACEGALLLIDASQGIEA-QT---VANFW-KAVEQDLVIIPVINKIDLPSA 140 (600)
T ss_dssp EEEEECCCCSGGGHHHHHH-----HH---HTCSEEEEEEETTTBCCH-HH---HHHHH-HHHHTTCEEEEEEECTTSTTC
T ss_pred EEEEEECCCcHhHHHHHHH-----HH---HhCCEEEEEEECCCCccH-HH---HHHHH-HHHHCCCCEEEEEeccCcccc
Confidence 4458999999886543222 11 245789999999774321 00 00000 112234456899999999754
Q ss_pred hHHHHHHHHHHHhCC--CCceeeecc-CCCChhhhh
Q 023301 111 TELGSLTERIKHINA--MAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 111 ~~~~~~~~~l~~~np--~a~i~~~~~-g~v~~~~l~ 143 (284)
+ .+++.+.++.... ..+++.++. .......++
T Consensus 141 ~-~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Ll 175 (600)
T 2ywe_A 141 D-VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEIL 175 (600)
T ss_dssp C-HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHH
T ss_pred C-HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHH
Confidence 3 3444455554432 123555543 334444444
No 183
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=73.43 E-value=18 Score=28.99 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=38.5
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC------EEE
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD------RII 101 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad------~iv 101 (284)
..+|+|||++++...... ...+ ...+.+|.|+.+...... .. ..+.+.++... .+|
T Consensus 117 ~~yD~viiD~p~~~~~~~-~~~l---------~~ad~viiv~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~v 178 (245)
T 3ea0_A 117 SFYDYIIVDFGASIDHVG-VWVL---------EHLDELCIVTTPSLQSLR--RA------GQLLKLCKEFEKPISRIEII 178 (245)
T ss_dssp HHCSEEEEEEESSCCTTH-HHHG---------GGCSEEEEEECSSHHHHH--HH------HHHHHHHHTCSSCCSCEEEE
T ss_pred hhCCEEEEeCCCCCchHH-HHHH---------HHCCEEEEEecCcHHHHH--HH------HHHHHHHHHhCCCccceEEE
Confidence 368999999988765432 2222 124568899988764422 11 12334444333 489
Q ss_pred EccCCCCCh
Q 023301 102 LNKIDLVTE 110 (284)
Q Consensus 102 lnK~D~~~~ 110 (284)
+|+.+.-..
T Consensus 179 ~N~~~~~~~ 187 (245)
T 3ea0_A 179 LNRADTNSR 187 (245)
T ss_dssp EESTTSCTT
T ss_pred EecCCCCCC
Confidence 999986543
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=73.39 E-value=3.7 Score=36.99 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=52.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEccc-chHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSK-HAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~-~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
....+.+++|+.+-......+. ...+...-..+.++.|+|.. .....+... .+.+......-.....+||+||+|+.
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~-~~fl~~~era~~lL~vvDls~~~~~~ls~g-~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLG-LEFLRHIARTRVLLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSC-HHHHHHHTSSSEEEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ceEEEEeccccccchhhhhhhh-HHHHHHHHHHHhhhEEeCCccCCHHHHHHH-HHHHHHHhHHhhcCCEEEEEECCChh
Confidence 3467788888854321100010 00111122467789999985 322222110 00000000112356789999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 109 TETELGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+.+.++.+.+.++.. ...++.++. ..-.+..++
T Consensus 283 ~~~~~~~l~~~l~~~--g~~vi~iSA~~g~gi~eL~ 316 (416)
T 1udx_A 283 EEEAVKALADALARE--GLAVLPVSALTGAGLPALK 316 (416)
T ss_dssp CHHHHHHHHHHHHTT--TSCEEECCTTTCTTHHHHH
T ss_pred hHHHHHHHHHHHHhc--CCeEEEEECCCccCHHHHH
Confidence 764455555544432 345665543 333455444
No 185
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=73.01 E-value=0.64 Score=36.73 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=33.8
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEc
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILN 103 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivln 103 (284)
....|++++|......+ .. .. .-..+.+|.|+|+.+.... ... ......+. ..-+||+|
T Consensus 82 ~~~~i~Dt~G~~~~~~~----~~-~~---~~~~d~~i~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~p~ilv~n 146 (199)
T 3l0i_B 82 IKLQIWDTAGQERFRTI----TS-SY---YRGAHGIIVVYDVTDQESF-NNV------KQWLQEIDRYASENVNKLLVGN 146 (199)
T ss_dssp EEEEEECCTTCTTCCCC----SC-C-----CCCSEEEECC-CCCSHHH-HHH------HHHHHHHHSCC-CCSEEEEC-C
T ss_pred EEEEEEECCCcHhHHHH----HH-HH---hhcCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhccCCCCEEEEEE
Confidence 45778899995443221 11 11 1246789999999874431 111 11223332 23377889
Q ss_pred cCCCCCh
Q 023301 104 KIDLVTE 110 (284)
Q Consensus 104 K~D~~~~ 110 (284)
|+|+.+.
T Consensus 147 K~Dl~~~ 153 (199)
T 3l0i_B 147 KCDLTTK 153 (199)
T ss_dssp CSSCC--
T ss_pred CccCCcc
Confidence 9999654
No 186
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=72.81 E-value=9.3 Score=32.49 Aligned_cols=14 Identities=14% Similarity=0.555 Sum_probs=8.4
Q ss_pred CCCEEEEecCCCCC
Q 023301 29 QFDHIVIETTGLAK 42 (284)
Q Consensus 29 ~~d~iiIE~sG~a~ 42 (284)
.+|+|||+++++..
T Consensus 213 ~yD~VIIDtpp~~~ 226 (299)
T 3cio_A 213 HYDLVIVDTPPMLA 226 (299)
T ss_dssp HCSEEEEECCCTTT
T ss_pred CCCEEEEcCCCCch
Confidence 45666666666543
No 187
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=72.52 E-value=24 Score=29.79 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=49.2
Q ss_pred CCCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
.++|+|||.++|..... ..+..+.. +...+.-+.++.|+|+......+.. + ..+...+ .-.-||+||.|
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~---~~~~~~~~~~~lv~~~~~~~~~~~~-----~-~~~~~~~-~i~givlnk~d 248 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELAR---LKEVLGPDEVLLVLDAMTGQEALSV-----A-RAFDEKV-GVTGLVLTKLD 248 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHH---HHHHHCCSEEEEEEEGGGTHHHHHH-----H-HHHHHHT-CCCEEEEECGG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHH---HhhhcCCCEEEEEEeCCCcHHHHHH-----H-HHHhhcC-CCCEEEEECCC
Confidence 47899999999876542 22333211 1122345667889998764332211 0 1111121 13568999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
.... ...+...+...+ .+|.....|
T Consensus 249 ~~~~--~g~~~~~~~~~~--~pi~~i~~g 273 (295)
T 1ls1_A 249 GDAR--GGAALSARHVTG--KPIYFAGVS 273 (295)
T ss_dssp GCSS--CHHHHHHHHHHC--CCEEEEC--
T ss_pred CCcc--HHHHHHHHHHHC--cCEEEEeCC
Confidence 7542 234445555554 566555554
No 188
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=71.52 E-value=8.3 Score=30.11 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=36.6
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
...+++++|......+.. .. .-..+.++.|+|+...... .+....+ ...+.... ...=+||+||+|+.+
T Consensus 74 ~l~i~Dt~G~~~~~~~~~-----~~---~~~~d~~i~v~d~~~~~s~-~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 74 ELALWDTAGQEDYDRLRP-----LS---YPDTDVILMCFSIDSPDSL-ENIPEKW-TPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp EEEEECCCCSGGGTTTGG-----GG---CTTCSEEEEEEETTCHHHH-HHHHHTH-HHHHHHHSTTCCEEEEEECGGGTT
T ss_pred EEEEEECCCchhHHHHHH-----Hh---cCCCCEEEEEEECCCHHHH-HHHHHHH-HHHHHHhCCCCCEEEEEecHHhhc
Confidence 456778888543322111 11 1246789999998874332 1110011 11111111 334578889999976
Q ss_pred hh
Q 023301 110 ET 111 (284)
Q Consensus 110 ~~ 111 (284)
..
T Consensus 144 ~~ 145 (201)
T 2gco_A 144 DE 145 (201)
T ss_dssp CH
T ss_pred Cc
Confidence 53
No 189
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=70.89 E-value=1.2 Score=34.41 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
..+++++|.......++.+.....+...-..+.++.|+|+...
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~ 96 (172)
T 2gj8_A 54 LHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTT 96 (172)
T ss_dssp EEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTC
T ss_pred EEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 4567777876543222211000011112245667888887653
No 190
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=70.49 E-value=22 Score=28.42 Aligned_cols=65 Identities=11% Similarity=0.145 Sum_probs=36.4
Q ss_pred cCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC-EEEEccC
Q 023301 27 QGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD-RIILNKI 105 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad-~ivlnK~ 105 (284)
+..+|+|||++++...... ...+ ...+.+|.|+++...... .. ..+ .....++.... .+|+||.
T Consensus 129 ~~~yD~viiD~pp~~~~~~-~~~l---------~~aD~viiv~~~~~~s~~--~~--~~~-~~~~~~~~~~~~~~v~N~~ 193 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEHLT-RGTA---------KAVDMMIAVIEPNLNSIK--TG--LNI-EKLAGDLGIKKVRYVINKV 193 (254)
T ss_dssp HTCCSEEEEEECTTCTTCC-HHHH---------TTCSEEEEEECSSHHHHH--HH--HHH-HHHHHHHTCSCEEEEEEEE
T ss_pred cCCCCEEEEeCCCcccHHH-HHHH---------HHCCEEEEecCCCHHHHH--HH--HHH-HHHHHHcCCccEEEEEeCC
Confidence 3689999999987655422 2222 124568899988765422 11 001 11233343332 4888999
Q ss_pred C
Q 023301 106 D 106 (284)
Q Consensus 106 D 106 (284)
+
T Consensus 194 ~ 194 (254)
T 3kjh_A 194 R 194 (254)
T ss_dssp C
T ss_pred C
Confidence 8
No 191
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=70.39 E-value=7.6 Score=29.29 Aligned_cols=64 Identities=17% Similarity=0.151 Sum_probs=33.9
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK~D~ 107 (284)
...+++++|...... +. ....-..+.++.|+|+...... . . .....++ ...-++|+||+|+
T Consensus 56 ~~~l~Dt~G~~~~~~----~~----~~~~~~~d~~i~v~d~~~~~~~--~----~--~~~l~~~~~~~~p~ilv~nK~Dl 119 (178)
T 2lkc_A 56 KITFLDTPGHEAFTT----MR----ARGAQVTDIVILVVAADDGVMP--Q----T--VEAINHAKAANVPIIVAINKMDK 119 (178)
T ss_dssp EEEESCCCSSSSSSC----SC----CSSCCCCCEEEEEEETTCCCCH--H----H--HHHHHHHGGGSCCEEEEEETTTS
T ss_pred eEEEEECCCCHHHHH----HH----HHHHhhCCEEEEEEECCCCCcH--H----H--HHHHHHHHhCCCCEEEEEECccC
Confidence 345677888644322 11 1112246778999998662110 0 0 0112233 3345888999999
Q ss_pred CCh
Q 023301 108 VTE 110 (284)
Q Consensus 108 ~~~ 110 (284)
.+.
T Consensus 120 ~~~ 122 (178)
T 2lkc_A 120 PEA 122 (178)
T ss_dssp SCS
T ss_pred CcC
Confidence 764
No 192
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=69.94 E-value=13 Score=32.16 Aligned_cols=94 Identities=20% Similarity=0.271 Sum_probs=54.0
Q ss_pred CCCCEEEEecCCCCCc-HHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKP-APVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p-~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
...|+++|++.|..+- ..+++.|. .+...+..+..+.|+|+..-...+.. .. ...+-...+.|++||.|
T Consensus 210 ~~~d~vliDtaG~~~~~~~l~~eL~---~i~ral~~de~llvLDa~t~~~~~~~------~~-~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 210 RGIDVVLIDTAGRSETNRNLMDEMK---KIARVTKPNLVIFVGDALAGNAIVEQ------AR-QFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HTCSEEEEEECCSCCTTTCHHHHHH---HHHHHHCCSEEEEEEEGGGTTHHHHH------HH-HHHHHSCCCEEEEECGG
T ss_pred ccchhhHHhhccchhHHHHHHHHHH---HHHHHhcCCCCEEEEecHHHHHHHHH------HH-HHHHhcCCCEEEEeCcC
Confidence 4689999999999652 23344432 12233456778899998775332211 00 11222357899999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
... ....+...+...+ .+|.....|
T Consensus 280 ~~a--~~G~~l~~~~~~~--~pi~~i~~G 304 (328)
T 3e70_C 280 ADA--RGGAALSISYVID--APILFVGVG 304 (328)
T ss_dssp GCS--CCHHHHHHHHHHT--CCEEEEECS
T ss_pred Ccc--chhHHHHHHHHHC--CCEEEEeCC
Confidence 743 2233444444443 566655555
No 193
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=69.84 E-value=12 Score=29.04 Aligned_cols=97 Identities=10% Similarity=0.043 Sum_probs=47.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-------hhcCEEEEc
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-------AYADRIILN 103 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-------~~Ad~ivln 103 (284)
...+.+++|.......+... .+ -..+.+|.|+|..+.... .+. .....++ ...=++|.|
T Consensus 73 ~l~i~Dt~g~~~~~~~~~~~----~~---~~~d~~ilv~d~~~~~s~-~~~------~~~~~~i~~~~~~~~~piilv~n 138 (195)
T 3cbq_A 73 TLVVYDIWEQGDAGGWLRDH----CL---QTGDAFLIVFSVTDRRSF-SKV------PETLLRLRAGRPHHDLPVILVGN 138 (195)
T ss_dssp EEEEECCCCCSGGGHHHHHH----HH---HHCSEEEEEEETTCHHHH-HTH------HHHHHHHHHHSTTSCCCEEEEEE
T ss_pred EEEEEecCCCccchhhhHHH----hh---ccCCEEEEEEECCCHHHH-HHH------HHHHHHHHHhcCCCCCCEEEEee
Confidence 34556777776543311111 11 134678888888764332 111 1112222 223467789
Q ss_pred cCCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 104 KIDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 104 K~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
|+|+.+..+ .+..+++.+..+ .++++++. .......++
T Consensus 139 K~Dl~~~~~v~~~~~~~~a~~~~--~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 139 KSDLARSREVSLEEGRHLAGTLS--CKHIETSAALHHNTRELF 179 (195)
T ss_dssp CTTCTTTCCSCHHHHHHHHHHTT--CEEEEEBTTTTBSHHHHH
T ss_pred chhccccCCcCHHHHHHHHHHhC--CEEEEEcCCCCCCHHHHH
Confidence 999865322 334444444443 56766653 233444444
No 194
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=69.84 E-value=4.5 Score=33.59 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=35.6
Q ss_pred CEEEEecCCCCCcH----HHHHHhcccccccceeeeceEEEEEccc--chHHhhhhcCCccchHHHHHHHh----hcCEE
Q 023301 31 DHIVIETTGLAKPA----PVIETFCTDELVSQYVKLDGVITLVDSK--HAMQHLNEVKPRFVVNEAVEQVA----YADRI 100 (284)
Q Consensus 31 d~iiIE~sG~a~p~----~i~~~l~~~~~l~~~~~l~~vv~vvD~~--~~~~~l~~~~~~~~~~~~~~Qi~----~Ad~i 100 (284)
...|+.|+|..+.. ..++.++. .+ .....+.++.|+|.. .+...- ......+.+... ..=++
T Consensus 85 ~l~liDTpG~~~~~~~~~~~~~~i~~--~l-~~~~~~~il~V~~~d~~~~~~~~-----~~~~~~l~~~~~~~~~~~~iv 156 (262)
T 3def_A 85 TINIIDTPGLVEAGYVNHQALELIKG--FL-VNRTIDVLLYVDRLDVYAVDELD-----KQVVIAITQTFGKEIWCKTLL 156 (262)
T ss_dssp EEEEEECCCSEETTEECHHHHHHHHH--HT-TTCEECEEEEEEESSCSCCCHHH-----HHHHHHHHHHHCGGGGGGEEE
T ss_pred eEEEEECCCCCCcccchHHHHHHHHH--HH-hcCCCCEEEEEEcCCCCCCCHHH-----HHHHHHHHHHhchhhhcCEEE
Confidence 56899999997653 22222221 11 123677888886554 322110 001111111111 13378
Q ss_pred EEccCCCCC
Q 023301 101 ILNKIDLVT 109 (284)
Q Consensus 101 vlnK~D~~~ 109 (284)
|+||+|+.+
T Consensus 157 v~nK~Dl~~ 165 (262)
T 3def_A 157 VLTHAQFSP 165 (262)
T ss_dssp EEECTTCCC
T ss_pred EEeCcccCC
Confidence 899999964
No 195
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=69.80 E-value=11 Score=31.96 Aligned_cols=15 Identities=20% Similarity=0.459 Sum_probs=10.4
Q ss_pred CCCEEEEecCCCCCc
Q 023301 29 QFDHIVIETTGLAKP 43 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p 43 (284)
.+|+|||+++.+...
T Consensus 201 ~yD~VIIDtpp~~~~ 215 (286)
T 3la6_A 201 NYDLVLIDTPPILAV 215 (286)
T ss_dssp HCSEEEEECCCTTTC
T ss_pred CCCEEEEcCCCCcch
Confidence 577788877776554
No 196
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=69.73 E-value=6.1 Score=31.09 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=37.1
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
...+++++|......+... . .-..+.+|.|+|+...... .+....+ ...+.... ...=+||+||+|+.+
T Consensus 74 ~~~i~Dt~G~~~~~~~~~~-----~---~~~~d~~i~v~d~~~~~s~-~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 74 ELALWDTAGQEDYDRLRPL-----S---YPDTDVILMCFSVDSPDSL-ENIPEKW-VPEVKHFCPNVPIILVANKKDLRS 143 (207)
T ss_dssp EEEEEECTTCTTCTTTGGG-----G---CTTCCEEEEEEETTCHHHH-HHHHHTH-HHHHHHHSTTCCEEEEEECGGGGG
T ss_pred EEEEEECCCcHHHHHHHHh-----h---cCCCCEEEEEEECCCHHHH-HHHHHHH-HHHHHHhCCCCCEEEEEEchhhhc
Confidence 4567788886554322111 1 1246788999998774321 1110001 11112211 234478889999976
Q ss_pred hh
Q 023301 110 ET 111 (284)
Q Consensus 110 ~~ 111 (284)
..
T Consensus 144 ~~ 145 (207)
T 2fv8_A 144 DE 145 (207)
T ss_dssp CH
T ss_pred cc
Confidence 53
No 197
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=69.52 E-value=4 Score=36.05 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=30.1
Q ss_pred eceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc-CEEEEccCCCCChhH-HHHHHHHHH
Q 023301 62 LDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA-DRIILNKIDLVTETE-LGSLTERIK 121 (284)
Q Consensus 62 l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A-d~ivlnK~D~~~~~~-~~~~~~~l~ 121 (284)
-+.++.|+|+..+...+. ..+.+.+... -++|+||+|+.+.+. .+.++++++
T Consensus 72 ~~lil~VvD~~d~~~s~~--------~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~ 125 (369)
T 3ec1_A 72 KALVVNIVDIFDFNGSFI--------PGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMR 125 (369)
T ss_dssp CCEEEEEEETTCSGGGCC--------SSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHH
T ss_pred CcEEEEEEECCCCCCchh--------hHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHH
Confidence 356899999998764321 1223333333 356779999986532 334444443
No 198
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=69.25 E-value=1.2 Score=39.39 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=53.3
Q ss_pred CEEEEecCCCCCcHHHHHHhccccccc---ceeeeceEEEEEccc--chHHhhhhcCCccchHHHHHHHh---hcCEEEE
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVS---QYVKLDGVITLVDSK--HAMQHLNEVKPRFVVNEAVEQVA---YADRIIL 102 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~---~~~~l~~vv~vvD~~--~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivl 102 (284)
...+|.|+|+.++..+.+.+.. ..+. ..-.++.++.++|+. .+...+.. .+++. ..=++++
T Consensus 212 ~~~liDtPG~~~~~~~~~~l~~-~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----------~d~l~~~~~~~~~v~ 280 (368)
T 3h2y_A 212 ESSLYDTPGIINHHQMAHYVGK-QSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----------FDYVSGGRRAFTCHF 280 (368)
T ss_dssp SCEEEECCCBCCTTSGGGGSCH-HHHHHHSCSSCCCCEEEEECTTEEEEETTTEE----------EEEEESSSEEEEEEE
T ss_pred CeEEEeCCCcCcHHHHHHHhhH-HHHHHhccccccCceEEEEcCCCEEEEcceEE----------EEEecCCCceEEEEe
Confidence 4689999999998754433221 1121 234678899999993 33322111 12222 2337899
Q ss_pred ccCCCCChhHHHHHHHHHHHhCC
Q 023301 103 NKIDLVTETELGSLTERIKHINA 125 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l~~~np 125 (284)
||+|.+...+++...+.+++...
T Consensus 281 nk~d~~~~~~~~~~~~~~~~~~g 303 (368)
T 3h2y_A 281 SNRLTIHRTKLEKADELYKNHAG 303 (368)
T ss_dssp CTTSCEEEEEHHHHHHHHHHHBT
T ss_pred cCccccccccHHHHHHHHHHHhC
Confidence 99999988888888888876643
No 199
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=69.13 E-value=13 Score=28.70 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=35.7
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
..+++++|......+... . .-..+.+|.|+|+.+.... .+....++ ..+.... ...=+||.||+|+.+
T Consensus 70 ~~i~Dt~G~~~~~~~~~~-----~---~~~~~~~i~v~d~~~~~s~-~~~~~~~~-~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 70 LQLCDTAGQDEFDKLRPL-----C---YTNTDIFLLCFSVVSPSSF-QNVSEKWV-PEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp EEEEECCCSTTCSSSGGG-----G---GTTCSEEEEEEETTCHHHH-HHHHHTHH-HHHHHHCSSSCEEEEEECGGGGG
T ss_pred EEEEECCCCHHHHHHhHh-----h---cCCCcEEEEEEECCCHHHH-HHHHHHHH-HHHHHhCCCCCEEEEEECHhhhh
Confidence 447889988654332111 1 1246789999999875432 21100011 1122211 223477889999865
No 200
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=68.65 E-value=23 Score=29.78 Aligned_cols=40 Identities=8% Similarity=0.107 Sum_probs=24.9
Q ss_pred cCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 27 QGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 27 ~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
...+|+|||++++..........+ ...+.+|.|+++....
T Consensus 154 ~~~yD~ViiD~p~~~~~~~~~~~l---------~~aD~viiv~~~~~~s 193 (307)
T 3end_A 154 LDDTDVVIFDVLGDVVCGGFAAPL---------QHADQAVVVTANDFDS 193 (307)
T ss_dssp TSSCSEEEEEECCSSCCGGGGGGG---------GTCSEEEEEECSSHHH
T ss_pred cccCCEEEEeCCCccchHHHHHHH---------HHCCEEEEEecCcHHH
Confidence 457999999987655432211111 2345588999887653
No 201
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=68.37 E-value=10 Score=28.94 Aligned_cols=69 Identities=20% Similarity=0.137 Sum_probs=34.7
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
...+++++|......+... . .-..+.++.|+|+.+.... .+....+. ..+.... ...=++|.||+|+.+
T Consensus 56 ~~~i~Dt~G~~~~~~~~~~-----~---~~~~~~~i~v~d~~~~~s~-~~~~~~~~-~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 56 ELSLWDTSGSPYYDNVRPL-----S---YPDSDAVLICFDISRPETL-DSVLKKWK-GEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEEEEECCSGGGTTTGGG-----G---CTTCSEEEEEEETTCHHHH-HHHHHTHH-HHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEEECCCChhhhhhHHh-----h---cCCCcEEEEEEECCCHHHH-HHHHHHHH-HHHHHHCCCCCEEEEEEcchhhc
Confidence 4567788886443221111 1 1245779999999874432 21100011 1111111 123367779999964
No 202
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=68.27 E-value=10 Score=36.51 Aligned_cols=72 Identities=19% Similarity=0.257 Sum_probs=44.1
Q ss_pred EEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHH---HHHhhcCEEEEccCCCC
Q 023301 33 IVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAV---EQVAYADRIILNKIDLV 108 (284)
Q Consensus 33 iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~---~Qi~~Ad~ivlnK~D~~ 108 (284)
=||.|+|=.|.. ++..+| -.+|++|.||||..-.+.-. ..+. .+-...=+++|||+|..
T Consensus 88 NlIDTPGHvDF~~Ev~~aL---------r~~DgavlvVDaveGV~~qT--------~~v~~~a~~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 88 NVIDTPGHVDFTIEVERSL---------RVLDGAVVVFCGTSGVEPQS--------ETVWRQANKYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp EEECCCSCTTCHHHHHHHH---------HHCSEEEEEEETTTCSCHHH--------HHHHHHHHHHTCCEEEEEECSSST
T ss_pred EEEeCCCCcccHHHHHHHH---------HHhCeEEEEEECCCCCchhH--------HHHHHHHHHcCCCeEEEEcccccc
Confidence 379999999965 333333 24778999999976432100 1122 33345668999999996
Q ss_pred ChhHHHHHHHHHHH
Q 023301 109 TETELGSLTERIKH 122 (284)
Q Consensus 109 ~~~~~~~~~~~l~~ 122 (284)
.. ++..+.+.++.
T Consensus 151 ~a-~~~~~~~ei~~ 163 (709)
T 4fn5_A 151 GA-NFLRVVEQIKK 163 (709)
T ss_dssp TC-CHHHHHHHHHH
T ss_pred Cc-cHHHHHHHhhh
Confidence 43 34444444443
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=68.00 E-value=0.99 Score=40.03 Aligned_cols=83 Identities=7% Similarity=-0.005 Sum_probs=52.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccc---eeeeceEEEEEccc--chHHhhhhcCCccchHHHHHHHh---hcCEEEE
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQ---YVKLDGVITLVDSK--HAMQHLNEVKPRFVVNEAVEQVA---YADRIIL 102 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~---~~~l~~vv~vvD~~--~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivl 102 (284)
...+|.|+|+.++..+.+.+.. ..+.. .-.++.++.++|+. .+...+.. .+++. ..=++++
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~-~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----------l~~l~~~~~~~~~v~ 281 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDA-RDLKIITPKREIHPRVYQLNEGQTLFFGGLAR----------LDYIKGGRRSFVCYM 281 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCT-TTHHHHSCSSCCCCEEEEECTTEEEEETTTEE----------EEEEESSSEEEEEEE
T ss_pred CeEEEeCCCcCcHHHHHHHHhH-HHHHHHhcccccCceEEEEcCCceEEECCEEE----------EEEccCCCceEEEEe
Confidence 5689999999988755443322 22222 24688999999994 33222211 12222 2347889
Q ss_pred ccCCCCChhHHHHHHHHHHHhC
Q 023301 103 NKIDLVTETELGSLTERIKHIN 124 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l~~~n 124 (284)
||.|.+...+++...+.+++..
T Consensus 282 ~k~d~~~~~~~~~~~~~~~~~~ 303 (369)
T 3ec1_A 282 ANELTVHRTKLEKADSLYANQL 303 (369)
T ss_dssp CTTSCEEEEEGGGHHHHHHHHB
T ss_pred cCCcccccccHHHHHHHHHHhc
Confidence 9999988777777777777654
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=66.48 E-value=5.4 Score=38.02 Aligned_cols=78 Identities=26% Similarity=0.377 Sum_probs=46.1
Q ss_pred CCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
..+=||.|+|=.|... +...|. .+|+.|.||||..-.+- +. +.+. ....+....-+++|||+|..
T Consensus 67 ~~iNlIDTPGH~DF~~Ev~raL~---------~~DgavlVVDa~~GV~~--qT--~~v~-~~a~~~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 67 TKVNIIDTPGHMDFLAEVYRSLS---------VLDGAILLISAKDGVQA--QT--RILF-HALRKMGIPTIFFINKIDQN 132 (638)
T ss_dssp CBCCCEECCCSSSTHHHHHHHHT---------TCSEEECCEESSCTTCS--HH--HHHH-HHHHHHTCSCEECCEECCSS
T ss_pred EEEEEEECCCcHHHHHHHHHHHH---------HhCEEEEEEeCCCCCcH--HH--HHHH-HHHHHcCCCeEEEEeccccc
Confidence 3455899999999653 333332 47889999999764321 00 0110 11234445669999999986
Q ss_pred ChhHHHHHHHHHHH
Q 023301 109 TETELGSLTERIKH 122 (284)
Q Consensus 109 ~~~~~~~~~~~l~~ 122 (284)
..+ ...+.+.+++
T Consensus 133 ~a~-~~~~~~~i~~ 145 (638)
T 3j25_A 133 GID-LSTVYQDIKE 145 (638)
T ss_dssp SCC-SHHHHHHHHH
T ss_pred cCC-HHHHHHHHHH
Confidence 543 3444444544
No 205
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=66.40 E-value=38 Score=27.46 Aligned_cols=65 Identities=6% Similarity=0.085 Sum_probs=36.8
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh----cCEEEEc
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY----ADRIILN 103 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~----Ad~ivln 103 (284)
..+|+|||++++...... ...+ ...+.+|.|+++...... .. ..+.+.+.. --.+|+|
T Consensus 109 ~~yD~viiD~~~~~~~~~-~~~~---------~~ad~vi~v~~~~~~~~~--~~------~~~~~~l~~~~~~~~~vv~N 170 (263)
T 1hyq_A 109 ESTDILLLDAPAGLERSA-VIAI---------AAAQELLLVVNPEISSIT--DG------LKTKIVAERLGTKVLGVVVN 170 (263)
T ss_dssp HTCSEEEEECCSSSSHHH-HHHH---------HHSSEEEEEECSSHHHHH--HH------HHHHHHHHHHTCEEEEEEEE
T ss_pred hhCCEEEEeCCCCCChHH-HHHH---------HHCCEEEEEeCCChhHHH--HH------HHHHHHHHhcCCCeeEEEEc
Confidence 478999999997666322 2222 123468889988764321 11 112223322 1237899
Q ss_pred cCCCCCh
Q 023301 104 KIDLVTE 110 (284)
Q Consensus 104 K~D~~~~ 110 (284)
+.+....
T Consensus 171 ~~~~~~~ 177 (263)
T 1hyq_A 171 RITTLGI 177 (263)
T ss_dssp EECTTTH
T ss_pred cCCcccc
Confidence 9987543
No 206
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=65.88 E-value=11 Score=33.27 Aligned_cols=42 Identities=19% Similarity=0.060 Sum_probs=25.9
Q ss_pred eceEEEEEcccchHHhhhhcCCccchHHHHHHHh-hcCEEEEccCCCCChh
Q 023301 62 LDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA-YADRIILNKIDLVTET 111 (284)
Q Consensus 62 l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~-~Ad~ivlnK~D~~~~~ 111 (284)
-+.++.|+|+..+...+.. .+.+-+. ..-++|+||+|+.+.+
T Consensus 70 ~~~il~VvD~~d~~~~~~~--------~l~~~~~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 70 DALVVKIVDIFDFNGSWLP--------GLHRFVGNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp CCEEEEEEETTSHHHHCCT--------THHHHSSSSCEEEEEECGGGSCTT
T ss_pred CcEEEEEEECCCCcccHHH--------HHHHHhCCCcEEEEEEChhcCCcc
Confidence 3468999999987543211 1222222 2346788999997653
No 207
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=65.83 E-value=8.6 Score=29.15 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=35.6
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCCh
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVTE 110 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~~ 110 (284)
..+++++|......+.. .. .-..+.++.|+|+...... .+....++ ..+.... ...=+||+||+|+.+.
T Consensus 55 ~~i~Dt~G~~~~~~~~~-----~~---~~~~d~~i~v~d~~~~~s~-~~~~~~~~-~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 55 LGLWDTAGQEDYDRLRP-----LS---YPQTDVSLICFSLVSPASF-ENVRAKWY-PEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEEECCCCSGGGTTTGG-----GG---CTTCSEEEEEEETTCHHHH-HHHHHTHH-HHHHHHSTTSCEEEEEECHHHHTC
T ss_pred EEEEECCCCHhHHHHHH-----Hh---ccCCcEEEEEEECCChhhH-HHHHHHHH-HHHHHhCCCCCEEEEeEccccccc
Confidence 34788898754332111 11 1246789999999874332 11100011 1111111 2344788899998654
No 208
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=65.73 E-value=33 Score=27.24 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=40.4
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc-
Q 023301 19 LLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA- 97 (284)
Q Consensus 19 l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A- 97 (284)
+.++++.-+..+|+|||++++...+.. ...+. ..+.+|.|+++...... .. ....+.+...
T Consensus 101 l~~~l~~l~~~yD~viiD~~~~~~~~~-~~~~~---------~ad~vi~v~~~~~~~~~--~~------~~~~~~l~~~~ 162 (237)
T 1g3q_A 101 LPEVIKSLKDKFDFILIDCPAGLQLDA-MSAML---------SGEEALLVTNPEISCLT--DT------MKVGIVLKKAG 162 (237)
T ss_dssp HHHHHHTTGGGCSEEEEECCSSSSHHH-HHHHT---------TCSEEEEEECSCHHHHH--HH------HHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEEEECCCCcCHHH-HHHHH---------HCCeEEEEecCCcccHH--HH------HHHHHHHHhCC
Confidence 344444213579999999988666322 22221 23568999998764321 11 1123333322
Q ss_pred ---CEEEEccCCCCC
Q 023301 98 ---DRIILNKIDLVT 109 (284)
Q Consensus 98 ---d~ivlnK~D~~~ 109 (284)
-.+|+||.+...
T Consensus 163 ~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 163 LAILGFVLNRYGRSD 177 (237)
T ss_dssp CEEEEEEEEEETSCT
T ss_pred CceEEEEEecCCccc
Confidence 247889998644
No 209
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=65.50 E-value=26 Score=26.73 Aligned_cols=74 Identities=5% Similarity=0.034 Sum_probs=37.9
Q ss_pred eceEEEEEcccchHHhhhhcCCccchHHHHHHHhh-------cCEEEEccCCCCCh----hHHHHHHHHHHHhCCCCcee
Q 023301 62 LDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY-------ADRIILNKIDLVTE----TELGSLTERIKHINAMAPVK 130 (284)
Q Consensus 62 l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~-------Ad~ivlnK~D~~~~----~~~~~~~~~l~~~np~a~i~ 130 (284)
.+.++.|+|..+.... .+. ..+..++.. .=+||.||+|+.+. -..+..+++.+.++ ..+++
T Consensus 86 ~~~~i~v~d~~~~~s~-~~~------~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-~~~~~ 157 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISF-QTV------YNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK-RCTYY 157 (184)
T ss_dssp CSEEEEEEETTCHHHH-HHH------HHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT-TCEEE
T ss_pred CCEEEEEEECcCHHHH-HHH------HHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC-CCeEE
Confidence 4678899998874432 111 112233322 23677799998421 11234444454443 35677
Q ss_pred eecc-CCCChhhhh
Q 023301 131 LAKY-GSVDMDFVL 143 (284)
Q Consensus 131 ~~~~-g~v~~~~l~ 143 (284)
+++. .......++
T Consensus 158 e~Sa~~~~gv~~lf 171 (184)
T 3ihw_A 158 ETCATYGLNVERVF 171 (184)
T ss_dssp EEBTTTTBTHHHHH
T ss_pred EecCCCCCCHHHHH
Confidence 6653 233455544
No 210
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=65.24 E-value=12 Score=29.42 Aligned_cols=69 Identities=20% Similarity=0.137 Sum_probs=35.0
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~ 109 (284)
...|++++|......+... . .-..+.+|.|+|+.+.... .+....++ ..+.... ...=+||.||+|+.+
T Consensus 77 ~l~i~Dt~G~~~~~~~~~~-----~---~~~~d~~ilv~D~~~~~s~-~~~~~~~~-~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 77 ELSLWDTSGSPYYDNVRPL-----S---YPDSDAVLICFDISRPETL-DSVLKKWK-GEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEEEECCSGGGTTTGGG-----G---CTTCSEEEEEEETTCHHHH-HHHHHTHH-HHHHHHCTTCEEEEEEECGGGGG
T ss_pred EEEEEeCCCcHhhhHHHHh-----h---ccCCCEEEEEEECCCHHHH-HHHHHHHH-HHHHHHCCCCCEEEEEechhhcc
Confidence 4567788886443222111 1 1246779999999875432 21100011 1122211 123367779999964
No 211
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=64.75 E-value=4.4 Score=40.03 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=39.4
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
....-||+|+|..+........ + -..+++|.|+|+..-...-. ..+... ..+....-++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~-----l---~~aD~ailVvDa~~g~~~qt----~~~~~~-~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAA-----L---RVTDGALVVVDTIEGVCVQT----ETVLRQ-ALGERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHH-----H---HTCSEEEEEEETTTBSCHHH----HHHHHH-HHHTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHH-----H---HhCCEEEEEEeCCCCCCHHH----HHHHHH-HHHcCCCeEEEEECCCcc
Confidence 3456789999999865433221 1 24678999999987432100 000000 112234568999999986
No 212
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=63.17 E-value=58 Score=26.23 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=43.8
Q ss_pred HHHHHHHHh-hcCCCCEEEEecCC-CCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH
Q 023301 17 KMLLQLAKK-KQGQFDHIVIETTG-LAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV 94 (284)
Q Consensus 17 ~~l~~l~~~-~~~~~d~iiIE~sG-~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi 94 (284)
+.+.+.++. -..++|+||||++| +..|.. ..+ ....+...+. ..||.|+|+.... +... ....+.+
T Consensus 97 ~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~--~~~-~~adla~~l~-~pviLV~~~~~~~--i~~~------~~~~~~l 164 (228)
T 3of5_A 97 ENLKQFIEDKYNQDLDILFIEGAGGLLTPYS--DHT-TQLDLIKALQ-IPVLLVSAIKVGC--INHT------LLTINEL 164 (228)
T ss_dssp HHHHHHHHGGGGSSCSEEEEEEEEETTCBSS--SSC-BHHHHHHHHT-CCEEEEEECSTTH--HHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHccCCEEEEECCCccccccc--cch-hHHHHHHHcC-CCEEEEEcCCcch--HHHH------HHHHHHH
Confidence 334555442 13689999999875 444421 000 0001111111 2488899997532 1110 1112323
Q ss_pred hh--cC--EEEEccCCCCChhHHHHHHHHHHHh
Q 023301 95 AY--AD--RIILNKIDLVTETELGSLTERIKHI 123 (284)
Q Consensus 95 ~~--Ad--~ivlnK~D~~~~~~~~~~~~~l~~~ 123 (284)
.. .+ -+|+||.+.-.. ..+...+.+++.
T Consensus 165 ~~~~~~i~GvIlN~~~~~~~-~~~~~~~~l~~~ 196 (228)
T 3of5_A 165 NRHNIKLAGWIANCNDSNIK-YIDEQINTIEEL 196 (228)
T ss_dssp HHTTCCEEEEEEEECCTTCS-CHHHHHHHHHHH
T ss_pred HhCCCcEEEEEEECcCCcch-hhHHHHHHHHHh
Confidence 22 23 378999875321 123345555553
No 213
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=61.00 E-value=34 Score=27.94 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhc-CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccch
Q 023301 16 VKMLLQLAKKKQ-GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHA 74 (284)
Q Consensus 16 ~~~l~~l~~~~~-~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~ 74 (284)
...+.++++.-. ..+|+|||++++......+. .+. ....+.+|.|+.+...
T Consensus 114 ~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~-~~~-------~~~aD~viiv~~~~~~ 165 (262)
T 2ph1_A 114 AGMIREFLGRVAWGELDHLLIDLPPGTGDAPLT-VMQ-------DAKPTGVVVVSTPQEL 165 (262)
T ss_dssp HHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHH-HHH-------HHCCSEEEEEECSSSC
T ss_pred HHHHHHHHHHhhccCCCEEEEECcCCCchHHHH-HHh-------hccCCeEEEEecCccc
Confidence 445666665212 57999999998865543211 110 0124568888887754
No 214
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=57.26 E-value=2.6 Score=38.31 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=32.6
Q ss_pred CCCEEEEecCCCCCcHHH-HHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH---hhcCEEEEcc
Q 023301 29 QFDHIVIETTGLAKPAPV-IETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV---AYADRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i-~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi---~~Ad~ivlnK 104 (284)
.....+++|.|+.....- .+.+... .....-..+.++.|+|+........ ..+.+.+ ...-++|+||
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~-~~~~~~~ad~il~VvD~~~~~~~~d--------~~l~~~l~~~~~pvilV~NK 140 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQ-AEIAMDEADVIIFMVNGREGVTAAD--------EEVAKILYRTKKPVVLAVNK 140 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHH-HHHHHHHCSEEEEEEESSSCSCHHH--------HHHHHHHTTCCSCEEEEEEC
T ss_pred CceEEEEECCCCCCcchHHHHHHHHH-HHhhHhhCCEEEEEEeCCCCCChHH--------HHHHHHHHHcCCCEEEEEEC
Confidence 456789999998642210 1111100 0001124678999999876322111 1122333 3455788899
Q ss_pred CCCCC
Q 023301 105 IDLVT 109 (284)
Q Consensus 105 ~D~~~ 109 (284)
+|+.+
T Consensus 141 ~D~~~ 145 (456)
T 4dcu_A 141 LDNTE 145 (456)
T ss_dssp C----
T ss_pred ccchh
Confidence 99864
No 215
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=56.93 E-value=57 Score=24.18 Aligned_cols=77 Identities=10% Similarity=0.068 Sum_probs=36.9
Q ss_pred eceEEEEEcccchHHhhhhcCCccchHHHHHHHh------hcCEEEEccCCCCCh----hHHHHHHHHHHHhCCCCceee
Q 023301 62 LDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA------YADRIILNKIDLVTE----TELGSLTERIKHINAMAPVKL 131 (284)
Q Consensus 62 l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~------~Ad~ivlnK~D~~~~----~~~~~~~~~l~~~np~a~i~~ 131 (284)
.+.++.|+|..+.... .+.. .++ . ....+. ..=+||.||+|+.+. -..+.+.++.+..+ ..++++
T Consensus 73 ~d~~ilv~D~~~~~s~-~~~~-~~~-~-~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-~~~~~~ 147 (178)
T 2iwr_A 73 ADAVIFVFSLEDENSF-QAVS-RLH-G-QLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK-RCSYYE 147 (178)
T ss_dssp CSEEEEEEETTCHHHH-HHHH-HHH-H-HHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS-SEEEEE
T ss_pred CCEEEEEEECcCHHHH-HHHH-HHH-H-HHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc-CCeEEE
Confidence 5678999999875432 2110 000 0 112221 133677799998321 11233444444442 356666
Q ss_pred ecc-CCCChhhhh
Q 023301 132 AKY-GSVDMDFVL 143 (284)
Q Consensus 132 ~~~-g~v~~~~l~ 143 (284)
++. .....+.++
T Consensus 148 ~Sa~~~~~i~~lf 160 (178)
T 2iwr_A 148 TXATYGLNVDRVF 160 (178)
T ss_dssp EBTTTTBTHHHHH
T ss_pred EeccccCCHHHHH
Confidence 653 233444443
No 216
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=56.64 E-value=24 Score=33.24 Aligned_cols=66 Identities=18% Similarity=0.155 Sum_probs=37.8
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
...|++|+|-.+... +.. ...-..+.+|.|+|+..-.+. +. ..... ........-+|++||+|+.+
T Consensus 71 ~i~liDTPGhe~F~~----~~~----r~~~~aD~aILVvDa~~Gv~~--qT--~e~l~-~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 71 GLFFIDTPGHEAFTT----LRK----RGGALADLAILIVDINEGFKP--QT--QEALN-ILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp EEEEECCCTTSCCTT----SBC----SSSBSCSEEEEEEETTTCCCH--HH--HHHHH-HHHHTTCCEEEEEECGGGST
T ss_pred CEEEEECCCcHHHHH----HHH----HHHhhCCEEEEEEECCCCccH--hH--HHHHH-HHHHcCCeEEEEeccccccc
Confidence 478999999876532 111 112346889999999872110 00 00001 11223335589999999964
No 217
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=56.57 E-value=3.2 Score=31.43 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=36.2
Q ss_pred CEEEEecCCCCCcHH--HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCC
Q 023301 31 DHIVIETTGLAKPAP--VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 31 d~iiIE~sG~a~p~~--i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~ 108 (284)
...+++++|...... ..+.+.. ..+. .-..+.++.|+|+.++..... ++ ..+ .+....=++|.||+|+.
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~-~~~~-~~~~~~~i~v~D~~~~~~~~~-----~~-~~~-~~~~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIAR-DYII-NEKPDLVVNIVDATALERNLY-----LT-LQL-MEMGANLLLALNKMDLA 121 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHH-HHHH-HHCCSEEEEEEETTCHHHHHH-----HH-HHH-HHTTCCEEEEEECHHHH
T ss_pred EEEEEECCCcccCCCcchhHHHHH-HHHh-cCCCCEEEEEecCCchhHhHH-----HH-HHH-HhcCCCEEEEEEchHhc
Confidence 456789999775421 0111110 0110 013567899999988643211 11 111 12234557888999985
Q ss_pred C
Q 023301 109 T 109 (284)
Q Consensus 109 ~ 109 (284)
.
T Consensus 122 ~ 122 (165)
T 2wji_A 122 K 122 (165)
T ss_dssp H
T ss_pred c
Confidence 3
No 218
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=56.12 E-value=17 Score=31.59 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=25.1
Q ss_pred eeceEEEEEcccch-HHhhhhcCCccchHHHHHHHh----h-cCEEEEccCCCCChhHH
Q 023301 61 KLDGVITLVDSKHA-MQHLNEVKPRFVVNEAVEQVA----Y-ADRIILNKIDLVTETEL 113 (284)
Q Consensus 61 ~l~~vv~vvD~~~~-~~~l~~~~~~~~~~~~~~Qi~----~-Ad~ivlnK~D~~~~~~~ 113 (284)
..+++|.|+|...- ...+.. . .....++. . .=+|+.||+|+.++++.
T Consensus 72 ~a~~~IlV~Ditd~~~~~~~~-----l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R 124 (331)
T 3r7w_B 72 SVGALVYVIDSQDEYINAITN-----L-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFK 124 (331)
T ss_dssp TCSEEEEECCCSSCTTHHHHH-----H-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHH
T ss_pred CCCEEEEEEECCchHHHHHHH-----H-HHHHHHHhhcCCCCcEEEEEECcccCchhhh
Confidence 35678999999873 111110 1 11122221 1 12566799999876543
No 219
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=55.32 E-value=69 Score=25.43 Aligned_cols=98 Identities=12% Similarity=0.226 Sum_probs=51.4
Q ss_pred EEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcC---EEEEccCCCC
Q 023301 32 HIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYAD---RIILNKIDLV 108 (284)
Q Consensus 32 ~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad---~ivlnK~D~~ 108 (284)
.-|.+|+|--....+..... -..+.++.|.|..+.... .+. ..++ ..+ .+....+ +||.||+|+.
T Consensus 64 l~iwDtaGqe~~~~l~~~~~--------~~a~~~ilv~di~~~~Sf-~~i-~~~~-~~i-~~~~~~~~piilVgNK~Dl~ 131 (216)
T 4dkx_A 64 LQLWDTAGLERFRSLIPSYI--------RDSAAAVVVYDITNVNSF-QQT-TKWI-DDV-RTERGSDVIIMLVGNKTDLA 131 (216)
T ss_dssp EEEECCSCTTTCGGGHHHHH--------TTCSEEEEEEETTCHHHH-HTH-HHHH-HHH-HHHHTTSSEEEEEEECTTCG
T ss_pred EEEEECCCchhhhhHHHHHh--------ccccEEEEEeecchhHHH-HHH-HHHH-HHH-HHhcCCCCeEEEEeeccchH
Confidence 34567777665554433221 135667888888775442 221 1111 111 1222222 5566999986
Q ss_pred ChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 109 TETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 109 ~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
+..+ .++.+++.++++ +..++++. .......+|
T Consensus 132 ~~r~V~~~e~~~~a~~~~--~~~~e~SAktg~nV~e~F 167 (216)
T 4dkx_A 132 DKRQVSIEEGERKAKELN--VMFIETSAKAGYNVKQLF 167 (216)
T ss_dssp GGCCSCHHHHHHHHHHHT--CEEEEEBTTTTBSHHHHH
T ss_pred hcCcccHHHHhhHHHHhC--CeeEEEeCCCCcCHHHHH
Confidence 5322 345566666665 66777764 345555555
No 220
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=55.27 E-value=3.7 Score=37.06 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=31.9
Q ss_pred CCCEEEEecCCCCCcH-HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCC
Q 023301 29 QFDHIVIETTGLAKPA-PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDL 107 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~-~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~ 107 (284)
.....+++|.|..... .+...+... .....-..+.++.|+|+..-..... ..+. .........-++|+||+|+
T Consensus 50 ~~~~~l~DT~G~~~~~~~~~~~~~~~-~~~~~~~ad~il~vvD~~~~~~~~d----~~~~-~~l~~~~~pvilv~NK~D~ 123 (436)
T 2hjg_A 50 NYDFNLIDTGGIDIGDEPFLAQIRQQ-AEIAMDEADVIIFMVNGREGVTAAD----EEVA-KILYRTKKPVVLAVNKLDN 123 (436)
T ss_dssp SSCCEEEC---------CHHHHHHHH-HHHHHHHCSEEEEEEETTTCSCHHH----HHHH-HHHTTCCSCEEEEEECCCC
T ss_pred CceEEEEECCCCCCcchhHHHHHHHH-HHHHHHhCCEEEEEEeCCCCCCHHH----HHHH-HHHHHcCCCEEEEEECccC
Confidence 3467899999986321 111111110 0111224678999999976322111 0111 1112223445788899998
Q ss_pred CCh
Q 023301 108 VTE 110 (284)
Q Consensus 108 ~~~ 110 (284)
.+.
T Consensus 124 ~~~ 126 (436)
T 2hjg_A 124 TEM 126 (436)
T ss_dssp ---
T ss_pred ccc
Confidence 653
No 221
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=52.70 E-value=90 Score=25.18 Aligned_cols=46 Identities=13% Similarity=0.311 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 18 MLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 18 ~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
.|.+++. ...+|+|||++++...+.. ...+ ...+.+|.|+++....
T Consensus 102 ~l~~~l~--~~~yD~iiiD~pp~~~~~~-~~~l---------~~aD~viiv~~~~~~s 147 (257)
T 1wcv_1 102 ALREALR--DEGYDLVLLDAPPSLSPLT-LNAL---------AAAEGVVVPVQAEYYA 147 (257)
T ss_dssp HHHHHCC--CTTCSEEEEECCSSCCHHH-HHHH---------HHCSEEEEEEESSTHH
T ss_pred HHHHHhc--ccCCCEEEEeCCCCCCHHH-HHHH---------HHCCeEEEEecCchHH
Confidence 3445554 2679999999998766432 2222 1245688999887644
No 222
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=52.67 E-value=13 Score=32.51 Aligned_cols=37 Identities=19% Similarity=0.049 Sum_probs=24.6
Q ss_pred cCEEEEccCCCCChhHHHHHHHHHHHhCC--CCceeeec
Q 023301 97 ADRIILNKIDLVTETELGSLTERIKHINA--MAPVKLAK 133 (284)
Q Consensus 97 Ad~ivlnK~D~~~~~~~~~~~~~l~~~np--~a~i~~~~ 133 (284)
.=++|+||+|+.+..++..+++.+++... ..+++.++
T Consensus 176 piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~S 214 (361)
T 2qag_A 176 NIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLP 214 (361)
T ss_dssp CEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCC
Confidence 34788899999998877766555655432 35666554
No 223
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=52.25 E-value=22 Score=28.31 Aligned_cols=44 Identities=14% Similarity=0.001 Sum_probs=22.8
Q ss_pred CEEEEccCCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 98 DRIILNKIDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 98 d~ivlnK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
=+||.||+|+.+..+ .+..+.+.+..+ +++++++. .....+.++
T Consensus 148 iilVgNK~DL~~~r~v~~~e~~~~a~~~~--~~~~e~SAk~g~~v~elf 194 (211)
T 2g3y_A 148 IILVGNKSDLVRCREVSVSEGRACAVVFD--CKFIETSAAVQHNVKELF 194 (211)
T ss_dssp EEEEEECTTCGGGCCSCHHHHHHHHHHHT--CEEEECBTTTTBSHHHHH
T ss_pred EEEEEEChHHhcCceEeHHHHHHHHHHcC--CEEEEEeCCCCCCHHHHH
Confidence 366779999854222 222233333333 56776654 234555555
No 224
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=56.55 E-value=3.2 Score=32.63 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=36.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~ 108 (284)
....+++++|......+... . .-..+.++.|+|+.+.... .+....++ ..+.... ...=+||+||+|+.
T Consensus 78 ~~l~i~Dt~G~~~~~~~~~~-----~---~~~~d~iilv~D~~~~~s~-~~~~~~~~-~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 78 VNLGLWDTAGQEDYDRLRPL-----S---YPQTDVFLICFSLVSPASF-ENVRAKWY-PEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 34457788886554332221 1 1246788999998764321 11110111 1111110 23447888999997
Q ss_pred Ch
Q 023301 109 TE 110 (284)
Q Consensus 109 ~~ 110 (284)
+.
T Consensus 148 ~~ 149 (204)
T 3th5_A 148 DD 149 (204)
Confidence 64
No 225
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=50.97 E-value=66 Score=26.61 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
..+|+|||++++...+.. ...+ ...+.+|.|+.+....
T Consensus 102 ~~yD~viiD~p~~~~~~~-~~~l---------~~aD~viiv~~~~~~~ 139 (286)
T 2xj4_A 102 AECDFILIDTPGGDSAIT-RMAH---------GRADLVVTPMNDSFVD 139 (286)
T ss_dssp HHCSEEEEECCSSCCHHH-HHHH---------HTCSEEEEEEESSHHH
T ss_pred hcCCEEEEcCCCCccHHH-HHHH---------HHCCEEEEEEcCCccH
Confidence 468999999998764432 2222 1234678888886543
No 226
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=50.67 E-value=62 Score=25.96 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=24.3
Q ss_pred CCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 29 QFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
.+|+|||++++...+.. ...+ ...+.+|.|+++....
T Consensus 113 ~yD~viiD~p~~~~~~~-~~~l---------~~ad~vi~v~~~~~~s 149 (260)
T 3q9l_A 113 DFEFIVCDSPAGIETGA-LMAL---------YFADEAIITTNPEVSS 149 (260)
T ss_dssp TCSEEEEECCSSSSHHH-HHHH---------HTCSEEEEEECSSHHH
T ss_pred CCCEEEEcCCCCCCHHH-HHHH---------HhCCEEEEEecCChhH
Confidence 79999999987555422 2222 1245688999987643
No 227
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=50.45 E-value=43 Score=30.84 Aligned_cols=97 Identities=14% Similarity=0.215 Sum_probs=51.3
Q ss_pred CCCCEEEEecCCCCCcHH-HHHHhccccccccee---eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEc
Q 023301 28 GQFDHIVIETTGLAKPAP-VIETFCTDELVSQYV---KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILN 103 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~---~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivln 103 (284)
.+.|+|||++.|...-.. +...|...-.....+ .-..++.|+|+..-...+... .. ..+-..-+.||+|
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~a------k~-f~~~~~itgvIlT 446 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA------KL-FHEAVGLTGITLT 446 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHH------HH-HHHHTCCSEEEEE
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHH------HH-HHhhcCCCEEEEE
Confidence 578999999999976432 222221100000001 123578899998754433210 11 1222345789999
Q ss_pred cCCCCChhHHHHHHHHHHHhCCCCceeeeccC
Q 023301 104 KIDLVTETELGSLTERIKHINAMAPVKLAKYG 135 (284)
Q Consensus 104 K~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g 135 (284)
|.|... ....+...+.... .+|.....|
T Consensus 447 KLD~ta--kgG~~lsi~~~~~--~PI~fig~G 474 (503)
T 2yhs_A 447 KLDGTA--KGGVIFSVADQFG--IPIRYIGVG 474 (503)
T ss_dssp CGGGCS--CCTHHHHHHHHHC--CCEEEEECS
T ss_pred cCCCcc--cccHHHHHHHHHC--CCEEEEecC
Confidence 999742 2233444444444 566655555
No 228
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=49.04 E-value=23 Score=30.69 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=26.9
Q ss_pred HHHHHHHhhcC---EEEEccCCCCChhHHHHHHHHHHHhC
Q 023301 88 NEAVEQVAYAD---RIILNKIDLVTETELGSLTERIKHIN 124 (284)
Q Consensus 88 ~~~~~Qi~~Ad---~ivlnK~D~~~~~~~~~~~~~l~~~n 124 (284)
..+.+++...+ +++++.-+.++-.+..+..+.++..+
T Consensus 211 ~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~~L~~~g 250 (334)
T 3iqw_A 211 SEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANYG 250 (334)
T ss_dssp HHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCCCCeeEEEEECCCccHHHHHHHHHHHHHHCC
Confidence 34567777765 78888888777777777777777665
No 229
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=47.82 E-value=40 Score=24.50 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=51.2
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCC-C
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDL-V 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~-~ 108 (284)
++.=+|+|+|. -+...++.+.. ...-+.||...|+..--+.+. ..+.+.+..|....+.|.+. +
T Consensus 25 ~~~~iI~t~Gs-i~~~~l~~I~~------~~~~r~VIi~TD~D~~GekIR--------k~i~~~lp~~~hafi~r~~~gV 89 (119)
T 2fcj_A 25 EPVVIVCTNGT-ISDARLEELAD------ELEGYDVYLLADADEAGEKLR--------RQFRRMFPEAEHLYIDRAYREV 89 (119)
T ss_dssp SCCEEEECCSC-CCHHHHHHHHH------HTTTSEEEEECCSSHHHHHHH--------HHHHHHCTTSEEECCCTTTCST
T ss_pred CCCCEEEeCCc-cCHHHHHHHHH------HhcCCCEEEEECCCccHHHHH--------HHHHHHCCCCcEEeccCCccCc
Confidence 56678999998 66655554431 223567899999988666543 23567788888999988764 2
Q ss_pred ChhHHHHHHHHHHHh
Q 023301 109 TETELGSLTERIKHI 123 (284)
Q Consensus 109 ~~~~~~~~~~~l~~~ 123 (284)
.....+.+.+.|++.
T Consensus 90 E~a~~~~I~~aL~~~ 104 (119)
T 2fcj_A 90 AAAPIWHLAQVLLRA 104 (119)
T ss_dssp TTSCHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHhc
Confidence 222344555555543
No 230
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=47.30 E-value=27 Score=29.30 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=35.4
Q ss_pred EEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHH-hhcCEEEEccCCCCCh
Q 023301 33 IVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQV-AYADRIILNKIDLVTE 110 (284)
Q Consensus 33 iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi-~~Ad~ivlnK~D~~~~ 110 (284)
.+++++|......+... . .-..+.++.|+|+.+.... .+....+ ...+.... ...=++|+||+|+.+.
T Consensus 206 ~l~Dt~G~~~~~~~~~~-----~---~~~~d~~i~v~d~~~~~s~-~~~~~~~-~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 206 GLWDTAGLEDYDRLRPL-----S---YPQTDVFLICFSLVSPASF-HHVRAKW-YPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEEEECCCGGGTTTGGG-----G---CTTCSEEEEEEETTCHHHH-HHHHHTH-HHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred EEEeCCCchhhhHHHHH-----h---ccCCCEEEEEEeCCCHHHH-HHHHHHH-HHHHHhhCCCCcEEEEEEchhcccc
Confidence 37888887543321111 1 1246789999999875432 1110001 11111111 3345788899998653
No 231
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=47.01 E-value=3.9 Score=32.02 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=23.2
Q ss_pred Cce----eeeeeCchHH--------HHHHHHHHhh-cCCCCEEEEecCCCC
Q 023301 4 NGC----LCCTVRGDLV--------KMLLQLAKKK-QGQFDHIVIETTGLA 41 (284)
Q Consensus 4 ~GC----iCCs~~~dl~--------~~l~~l~~~~-~~~~d~iiIE~sG~a 41 (284)
.|| +||..+..+. ..|.+++... ..++|+++||+.+-.
T Consensus 62 ~G~~~v~i~~~~~~~~~~~~~~~~~~~L~~ll~r~~~~~~D~ilIEg~k~~ 112 (174)
T 1np6_A 62 AGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHE 112 (174)
T ss_dssp HTCSEEEEECSSEEEEEEECSSSCCCCHHHHHHHSCGGGCSEEEEESCSSC
T ss_pred CCcceeecccchhheeeeeccCCchhhHHHHHHhcCCCcchHHHHHHHhhc
Confidence 577 8987543221 3566666521 124499999997754
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=44.80 E-value=67 Score=27.04 Aligned_cols=93 Identities=18% Similarity=0.323 Sum_probs=48.3
Q ss_pred CCCCEEEEecCCCCCcHH-HHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCC
Q 023301 28 GQFDHIVIETTGLAKPAP-VIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKID 106 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~-i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D 106 (284)
.++|+|||+|+|+..... .+..+.. .+. ...-+.++.|+|+..-...+.+.... ...+ .-.-||+||.|
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~--~l~-~~~~~~~~lVl~at~~~~~~~~~~~~------~~~l-~~~giVltk~D 250 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKE--TIP-FESSIQSFLVLSATAKYEDMKHIVKR------FSSV-PVNQYIFTKID 250 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHH--HSC-CCTTEEEEEEEETTBCHHHHHHHTTT------TSSS-CCCEEEEECTT
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHH--HHh-hcCCCeEEEEEECCCCHHHHHHHHHH------HhcC-CCCEEEEeCCC
Confidence 468999999999986532 2322211 111 11234578899887643333221110 0112 24678889999
Q ss_pred CCChhHHHHHHHHHHHhCCCCceeeecc
Q 023301 107 LVTETELGSLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 107 ~~~~~~~~~~~~~l~~~np~a~i~~~~~ 134 (284)
.... ...+...+.... .+|.....
T Consensus 251 ~~~~--~g~~~~~~~~~~--~pi~~i~~ 274 (296)
T 2px0_A 251 ETTS--LGSVFNILAESK--IGVGFMTN 274 (296)
T ss_dssp TCSC--CHHHHHHHHTCS--CCCSEECC
T ss_pred cccc--hhHHHHHHHHHC--cCEEEEEC
Confidence 7542 234445454443 44444333
No 233
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=44.29 E-value=39 Score=25.62 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=10.2
Q ss_pred cCEEEE-ccCCCCChhHH
Q 023301 97 ADRIIL-NKIDLVTETEL 113 (284)
Q Consensus 97 Ad~ivl-nK~D~~~~~~~ 113 (284)
.-+|++ ||+|+.+....
T Consensus 113 ~piilv~nK~Dl~~~~~~ 130 (184)
T 2zej_A 113 SPVILVGTHLDVSDEKQR 130 (184)
T ss_dssp CEEEEEEECGGGCCHHHH
T ss_pred CcEEEEEECCCcccchhh
Confidence 334444 88888765443
No 234
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=43.84 E-value=52 Score=27.47 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=27.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHhCCceEEEEEEEEecCCC
Q 023301 193 TIVSEGTLDLDEVDDWLERLIEEKGEDLYRMKGILSVSGSE 233 (284)
Q Consensus 193 ~~~~~~~~~~~~l~~~l~~l~~~~~~~i~R~KG~v~~~~~~ 233 (284)
-|.+..-=+++.|..++..+.... -+||.+.++..+
T Consensus 20 ~Y~f~~~~d~~~~~~~~~~~~~~~-----~~~G~i~~a~eG 55 (265)
T 4f67_A 20 FYKFIPLNDFRSLREPILTKMHEI-----GIKGTIILAHEG 55 (265)
T ss_dssp EEEECCCTTHHHHHHHHHHHHHHH-----TCEEEEEEETTE
T ss_pred EeCeecCCCHHHHHHHHHHHHHHC-----CCeEEEEEcCcc
Confidence 356666668999999999887443 478999887665
No 235
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=43.79 E-value=68 Score=26.02 Aligned_cols=47 Identities=19% Similarity=0.063 Sum_probs=28.1
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 19 LLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 19 l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
+.+++..-+..+|+|||++++...... ...+. ..+.+|.|+.+....
T Consensus 134 l~~~l~~l~~~yD~viiD~pp~~~~~~-~~~l~---------~aD~vivv~~~~~~s 180 (267)
T 3k9g_A 134 LKTSLGTLYYKYDYIVIDTNPSLDVTL-KNALL---------CSDYVIIPMTAEKWA 180 (267)
T ss_dssp HHHHHHTTCTTCSEEEEEECSSCSHHH-HHHHT---------TCSEEEEEEESCTTH
T ss_pred HHHHHHHhhcCCCEEEEECcCCccHHH-HHHHH---------HCCeEEEEeCCChHH
Confidence 444444223579999999988665432 22221 145688888886543
No 236
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=43.24 E-value=27 Score=32.11 Aligned_cols=66 Identities=17% Similarity=0.117 Sum_probs=37.0
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHH-HHHHHhhcCEEEEccCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNE-AVEQVAYADRIILNKIDLV 108 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~-~~~Qi~~Ad~ivlnK~D~~ 108 (284)
..+.|++|+|-.+.... + ....-..+.+|.|+|+..-.. +...... ........=+|++||+|+.
T Consensus 51 ~~i~~iDTPGhe~f~~~----~----~~~~~~aD~aILVVda~~g~~------~qT~e~l~~~~~~~vPiIVviNKiDl~ 116 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSM----R----ARGAQATDIVVLVVAADDGVM------PQTIEAIQHAKAAQVPVVVAVNKIDKP 116 (501)
T ss_dssp SCCCEECCCTTTCCTTS----B----CSSSBSCSSEEEEEETTTBSC------TTTHHHHHHHHHTTCCEEEEEECSSSS
T ss_pred EEEEEEECCCcHHHHHH----H----HHHHhhCCEEEEEeecccCcc------HHHHHHHHHHHhcCceEEEEEEecccc
Confidence 35678999997654321 1 112235678999999876321 1111001 1122333458889999996
Q ss_pred C
Q 023301 109 T 109 (284)
Q Consensus 109 ~ 109 (284)
+
T Consensus 117 ~ 117 (501)
T 1zo1_I 117 E 117 (501)
T ss_dssp T
T ss_pred c
Confidence 4
No 237
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=42.70 E-value=1.2e+02 Score=23.67 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=44.1
Q ss_pred CCCCEEEEecCCC-CCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhh----cCEEEE
Q 023301 28 GQFDHIVIETTGL-AKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAY----ADRIIL 102 (284)
Q Consensus 28 ~~~d~iiIE~sG~-a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~----Ad~ivl 102 (284)
..+|+|||++++. ..+.. ...+. ..+.+|.++.+...... .. ..+.+.+.. --.+|+
T Consensus 66 ~~yD~viiD~p~~~~~~~~-~~~l~---------~aD~viiv~~~~~~~~~--~~------~~~~~~l~~~~~~~~~vv~ 127 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDEDL-EALAD---------GCDLLVIPSTPDALALD--AL------MLTIETLQKLGNNRFRILL 127 (209)
T ss_dssp GGCSEEEEEEECCCSSSHH-HHHHH---------TSSEEEEEECSSHHHHH--HH------HHHHHHHHHTCSSSEEEEE
T ss_pred hcCCEEEEeCCCCcCcHHH-HHHHH---------HCCEEEEEecCCchhHH--HH------HHHHHHHHhccCCCEEEEE
Confidence 4689999999987 66543 22221 23458888888764321 11 111222221 235888
Q ss_pred ccCCCCChhHHHHHHHHHHHh
Q 023301 103 NKIDLVTETELGSLTERIKHI 123 (284)
Q Consensus 103 nK~D~~~~~~~~~~~~~l~~~ 123 (284)
|+.+.........+.+.+++.
T Consensus 128 N~~~~~~~~~~~~~~~~l~~~ 148 (209)
T 3cwq_A 128 TIIPPYPSKDGDEARQLLTTA 148 (209)
T ss_dssp CSBCCTTSCHHHHHHHHHHHT
T ss_pred EecCCccchHHHHHHHHHHHc
Confidence 999975412235566777764
No 238
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=42.66 E-value=27 Score=31.28 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=36.4
Q ss_pred CEEEEecCCCCCcH-----HHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccC
Q 023301 31 DHIVIETTGLAKPA-----PVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKI 105 (284)
Q Consensus 31 d~iiIE~sG~a~p~-----~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~ 105 (284)
...++.|.|+.... +-+..... .. .-..+.++.|+|+..-..... ..+. .........=++|+||+
T Consensus 50 ~~~l~DT~G~~~~~~~~~~~~~~~~~~-~~---~~~ad~il~V~D~~~~~~~~d----~~i~-~~l~~~~~p~ilv~NK~ 120 (439)
T 1mky_A 50 TFKLVDTCGVFDNPQDIISQKMKEVTL-NM---IREADLVLFVVDGKRGITKED----ESLA-DFLRKSTVDTILVANKA 120 (439)
T ss_dssp EEEEEECTTTTSSGGGCCCHHHHHHHH-HH---HTTCSEEEEEEETTTCCCHHH----HHHH-HHHHHHTCCEEEEEESC
T ss_pred EEEEEECCCccccccchHHHHHHHHHH-HH---HHhCCEEEEEEECCCCCCHHH----HHHH-HHHHHcCCCEEEEEeCC
Confidence 46789999987521 11111110 11 124678999999875321111 0111 11222234457888999
Q ss_pred CCCC
Q 023301 106 DLVT 109 (284)
Q Consensus 106 D~~~ 109 (284)
|+.+
T Consensus 121 D~~~ 124 (439)
T 1mky_A 121 ENLR 124 (439)
T ss_dssp CSHH
T ss_pred CCcc
Confidence 9853
No 239
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=41.82 E-value=27 Score=33.37 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=42.7
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCC
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVT 109 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~ 109 (284)
....|+.|+|..+........ + -..+.++.|+|+..-..... +.+.. ...+....-++++||+|+.
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~-----l---~~ad~~ilVvD~~~g~~~qt----~~~~~-~~~~~~ip~ilv~NKiD~~- 139 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGA-----L---EAADAALVAVSAEAGVQVGT----ERAWT-VAERLGLPRMVVVTKLDKG- 139 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHH-----H---HHCSEEEEEEETTTCSCHHH----HHHHH-HHHHTTCCEEEEEECGGGC-
T ss_pred EEEEEEeCCCccchHHHHHHH-----H---hhcCcEEEEEcCCcccchhH----HHHHH-HHHHccCCEEEEecCCchh-
Confidence 356788999987754322211 1 24567899999865322100 00101 1122345668899999997
Q ss_pred hhHHHHHHHHHHH
Q 023301 110 ETELGSLTERIKH 122 (284)
Q Consensus 110 ~~~~~~~~~~l~~ 122 (284)
....++.+.++.
T Consensus 140 -~~~~~~~~~l~~ 151 (665)
T 2dy1_A 140 -GDYYALLEDLRS 151 (665)
T ss_dssp -CCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHH
Confidence 344444444544
No 240
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=41.64 E-value=19 Score=32.39 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=27.8
Q ss_pred CEEEEccCCCCChhHHHHHHHHHHH-hC-CCCceeeec
Q 023301 98 DRIILNKIDLVTETELGSLTERIKH-IN-AMAPVKLAK 133 (284)
Q Consensus 98 d~ivlnK~D~~~~~~~~~~~~~l~~-~n-p~a~i~~~~ 133 (284)
=++|+||+|..+++++..+.+.++. +. ....|+..+
T Consensus 179 vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 179 IIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP 216 (427)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC
T ss_pred EEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecC
Confidence 4667799999999999999998886 54 356666544
No 241
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=39.97 E-value=1.3e+02 Score=25.94 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=11.8
Q ss_pred CCCEEEEecCCCCC
Q 023301 29 QFDHIVIETTGLAK 42 (284)
Q Consensus 29 ~~d~iiIE~sG~a~ 42 (284)
++|+|||+|+..+.
T Consensus 159 ~yD~IIiDtpPtG~ 172 (354)
T 2woj_A 159 TFDTVIFDTAPTGH 172 (354)
T ss_dssp SCSEEEEECCCHHH
T ss_pred CCCEEEECCCCchH
Confidence 79999999998544
No 242
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=37.71 E-value=64 Score=24.68 Aligned_cols=43 Identities=14% Similarity=0.023 Sum_probs=21.8
Q ss_pred EEEEccCCCCChhH--HHHHHHHHHHhCCCCceeeecc-CCCChhhhh
Q 023301 99 RIILNKIDLVTETE--LGSLTERIKHINAMAPVKLAKY-GSVDMDFVL 143 (284)
Q Consensus 99 ~ivlnK~D~~~~~~--~~~~~~~l~~~np~a~i~~~~~-g~v~~~~l~ 143 (284)
++|.||+|+.+... .+..+.+.... .+++++++. .......++
T Consensus 118 ilV~NK~Dl~~~r~v~~~~~~~~a~~~--~~~~~e~SA~~g~~v~~lf 163 (192)
T 2cjw_A 118 ILVGNKSDLVRXREVSVSEGRAXAVVF--DXKFIETSAAVQHNVKELF 163 (192)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHT--TCEEEECBTTTTBSHHHHH
T ss_pred EEEEechhhhccccccHHHHHHHHHHh--CCceEEeccccCCCHHHHH
Confidence 67779999864322 22222222222 356776654 234555554
No 243
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=37.43 E-value=22 Score=29.62 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.0
Q ss_pred hcCEEEEccCCCCChhHHHHHHHHHHH
Q 023301 96 YADRIILNKIDLVTETELGSLTERIKH 122 (284)
Q Consensus 96 ~Ad~ivlnK~D~~~~~~~~~~~~~l~~ 122 (284)
..=++|+||+|..+.+++...++.+++
T Consensus 141 ~~vI~Vi~K~D~lt~~e~~~~k~~i~~ 167 (270)
T 3sop_A 141 VNIIPVIAKADTMTLEEKSEFKQRVRK 167 (270)
T ss_dssp SEEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeccccCCHHHHHHHHHHHHH
Confidence 466788899999999888887777764
No 244
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=35.64 E-value=35 Score=28.08 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=19.9
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHH
Q 023301 19 LLQLAKKKQGQFDHIVIETTGLAKPAP 45 (284)
Q Consensus 19 l~~l~~~~~~~~d~iiIE~sG~a~p~~ 45 (284)
+.+++++-+..||.|+|+..|+++|..
T Consensus 97 ll~al~~L~~~PdlllvDG~GiaHPRr 123 (237)
T 3goc_A 97 VLAALDALPCPPGLIVCDGYGVAHPRR 123 (237)
T ss_dssp HHHHHHTSSSCCSEEEEESCSSCSTTS
T ss_pred HHHHHHhcCCCCCEEEEeCceeecCCC
Confidence 444444224579999999999999963
No 245
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=34.42 E-value=23 Score=18.32 Aligned_cols=15 Identities=20% Similarity=0.616 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHhhhh
Q 023301 269 NLDETALRKGFKGCL 283 (284)
Q Consensus 269 ~ld~~~l~~~l~~c~ 283 (284)
.+|+.+|++.|+.|+
T Consensus 8 rfdekqieelldnci 22 (31)
T 4h62_V 8 RFDEKQIEELLDNCI 22 (31)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 478999999999996
No 246
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=33.00 E-value=35 Score=30.07 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=37.3
Q ss_pred CCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhc--------CEEE
Q 023301 30 FDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYA--------DRII 101 (284)
Q Consensus 30 ~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~A--------d~iv 101 (284)
....|+.++|+-....-...+- ...+...-..+.++.|||+........ .+...|... -.++
T Consensus 119 ~~i~l~D~pGl~~~a~~~~~~g-~~~l~~i~~ad~il~vvD~~~p~~~~~---------~i~~EL~~~~~~l~~k~~~i~ 188 (376)
T 4a9a_A 119 AKIQMLDLPGIIDGAKDGRGRG-KQVIAVARTCNLLFIILDVNKPLHHKQ---------IIEKELEGVGIRLNKTPPDIL 188 (376)
T ss_dssp EEEEEEECGGGCCC-----CHH-HHHHHHHHHCSEEEEEEETTSHHHHHH---------HHHHHHHHTTEEETCCCCCEE
T ss_pred cEEEEEeCCCccCCchhhhHHH-HHHHHHHHhcCccccccccCccHHHHH---------HHHHHHHHhhHhhccCChhhh
Confidence 3467899999976432111110 011222235678999999987554322 223334433 3588
Q ss_pred EccCCC
Q 023301 102 LNKIDL 107 (284)
Q Consensus 102 lnK~D~ 107 (284)
+||+|.
T Consensus 189 ~nK~d~ 194 (376)
T 4a9a_A 189 IKKKEK 194 (376)
T ss_dssp EEECSS
T ss_pred hhHhhh
Confidence 999985
No 247
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=32.62 E-value=33 Score=29.04 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=22.8
Q ss_pred CEEEEccCCCCChhHHH----HHHHHHHHhCCCCceeeecc
Q 023301 98 DRIILNKIDLVTETELG----SLTERIKHINAMAPVKLAKY 134 (284)
Q Consensus 98 d~ivlnK~D~~~~~~~~----~~~~~l~~~np~a~i~~~~~ 134 (284)
-++|+||+|+.+.+++. ++++.++..+ +++++++.
T Consensus 158 iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~--~~~~e~Sa 196 (301)
T 2qnr_A 158 IVPVIAKADTLTLKERERLKKRILDEIEEHN--IKIYHLPD 196 (301)
T ss_dssp EEEEECCGGGSCHHHHHHHHHHHHHHHHHTT--CCCCCCC-
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC--CeEEecCC
Confidence 47888999998876654 4445555443 67776653
No 248
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=32.46 E-value=37 Score=27.70 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHH
Q 023301 19 LLQLAKKKQGQFDHIVIETTGLAKPAP 45 (284)
Q Consensus 19 l~~l~~~~~~~~d~iiIE~sG~a~p~~ 45 (284)
+.++++.-+..||.|+++..|+++|..
T Consensus 93 ~l~al~~L~~~PdlllvDG~Gi~HpR~ 119 (225)
T 2w36_A 93 FLKAWEKLRTKPDVVVFDGQGLAHPRK 119 (225)
T ss_dssp HHHHHTTCCSCCSEEEEESCSSSSTTS
T ss_pred HHHHHHhcCCCCCEEEEeCeEEEcCCC
Confidence 444454223589999999999999964
No 249
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=31.93 E-value=22 Score=33.12 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=35.6
Q ss_pred CEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHHHHHHh---hcCEEEEccCCC
Q 023301 31 DHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVA---YADRIILNKIDL 107 (284)
Q Consensus 31 d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~---~Ad~ivlnK~D~ 107 (284)
...|++|+|-..... +. ....-..+.+|.|+|+..-... . . .....++. ..=+|++||+|+
T Consensus 53 ~i~~iDTPGhe~f~~----~~----~~~~~~aD~vILVVDa~dg~~~--q----t--~e~l~~~~~~~vPiIVViNKiDl 116 (537)
T 3izy_P 53 KITFLDTPGHAAFSA----MR----ARGTQVTDIVILVVAADDGVMK--Q----T--VESIQHAKDAHVPIVLAINKCDK 116 (537)
T ss_dssp CCBCEECSSSCCTTT----SB----BSSSBSBSSCEEECBSSSCCCH--H----H--HHHHHHHHTTTCCEEECCBSGGG
T ss_pred EEEEEECCChHHHHH----HH----HHHHccCCEEEEEEECCCCccH--H----H--HHHHHHHHHcCCcEEEEEecccc
Confidence 567889999655332 11 1112346789999999763211 0 0 01122222 234788899998
Q ss_pred CC
Q 023301 108 VT 109 (284)
Q Consensus 108 ~~ 109 (284)
.+
T Consensus 117 ~~ 118 (537)
T 3izy_P 117 AE 118 (537)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 250
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=31.73 E-value=37 Score=28.07 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=19.8
Q ss_pred HHHHHHhhcCCCCEEEEecCCCCCcHH
Q 023301 19 LLQLAKKKQGQFDHIVIETTGLAKPAP 45 (284)
Q Consensus 19 l~~l~~~~~~~~d~iiIE~sG~a~p~~ 45 (284)
+.+.++.-+..||.|+|+..|+++|..
T Consensus 99 ll~al~~L~~~PdlllvDG~GiaHPRr 125 (246)
T 3ga2_A 99 IIEAAKKLETEPDVFLFDGNGYLHYNH 125 (246)
T ss_dssp HHHHHHHCSSCCSCEEEEBCSSSSTTS
T ss_pred HHHHHHhcCCCCCEEEEcCcEEecCCC
Confidence 444444223689999999999999963
No 251
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=30.35 E-value=2.1e+02 Score=25.30 Aligned_cols=107 Identities=15% Similarity=0.061 Sum_probs=67.1
Q ss_pred eeeeeeCchHHHHHHHHHHhhcCCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCcc
Q 023301 6 CLCCTVRGDLVKMLLQLAKKKQGQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRF 85 (284)
Q Consensus 6 CiCCs~~~dl~~~l~~l~~~~~~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~ 85 (284)
.|=|+. |.+...+.+.+. ....++++||.+ |..+ +.+.. . ..-+..-|+.+..- +
T Consensus 7 viIiG~-Gr~G~~va~~L~--~~g~~vvvId~d----~~~v-~~~~~-------~--g~~vi~GDat~~~~-L------- 61 (413)
T 3l9w_A 7 VIIAGF-GRFGQITGRLLL--SSGVKMVVLDHD----PDHI-ETLRK-------F--GMKVFYGDATRMDL-L------- 61 (413)
T ss_dssp EEEECC-SHHHHHHHHHHH--HTTCCEEEEECC----HHHH-HHHHH-------T--TCCCEESCTTCHHH-H-------
T ss_pred EEEECC-CHHHHHHHHHHH--HCCCCEEEEECC----HHHH-HHHHh-------C--CCeEEEcCCCCHHH-H-------
Confidence 456775 678888888887 467899999964 5543 33321 1 11234457766321 1
Q ss_pred chHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHhCCCCceeeeccCCCChhhhhc
Q 023301 86 VVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHINAMAPVKLAKYGSVDMDFVLG 144 (284)
Q Consensus 86 ~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v~~~~l~~ 144 (284)
....+..||.||+.=-| ++.-..+...+++++|..+|+......-....|..
T Consensus 62 ----~~agi~~A~~viv~~~~---~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~~L~~ 113 (413)
T 3l9w_A 62 ----ESAGAAKAEVLINAIDD---PQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQ 113 (413)
T ss_dssp ----HHTTTTTCSEEEECCSS---HHHHHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred ----HhcCCCccCEEEECCCC---hHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHH
Confidence 13457889999887644 44455677889999999998866554333444433
No 252
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=30.29 E-value=2e+02 Score=24.21 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=52.4
Q ss_pred cCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchHHhhhhcCCccchHHH-HHHHhhcCEEEEccCCCCC--hhHH
Q 023301 37 TTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAMQHLNEVKPRFVVNEA-VEQVAYADRIILNKIDLVT--ETEL 113 (284)
Q Consensus 37 ~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~-~~Qi~~Ad~ivlnK~D~~~--~~~~ 113 (284)
++-++.|..+++.|... + ...++++|+...... + ....+ .-.-..+|.|++- ++-++ .+.+
T Consensus 21 ~~~~~~~~~~~~~l~~~---~-----~~~~~liDPdK~~~~--~-----~~~~~~~~~~sGtDai~VG-S~~vt~~~~~~ 84 (286)
T 3vk5_A 21 APPLWRPGRVLARLREH---Q-----PGPVHIIDPFKVPVT--E-----AVEKAAELTRLGFAAVLLA-STDYESFESHM 84 (286)
T ss_dssp CCCTTSCCHHHHHHHHS---C-----CEEEEEECTTTSCHH--H-----HHHHHHHHHHTTCSCEEEE-CSCCSSHHHHH
T ss_pred CCCccCchHHHHHHHhc---c-----CCceEEECCCCCCcH--H-----HHHHHHHHHhcCCCEEEEc-cCCCCcchHHH
Confidence 44489999999887642 1 124679999874321 1 00111 1233458999999 99899 8899
Q ss_pred HHHHHHHHHhCCCCceee
Q 023301 114 GSLTERIKHINAMAPVKL 131 (284)
Q Consensus 114 ~~~~~~l~~~np~a~i~~ 131 (284)
..+.+.+|+..+ .+++.
T Consensus 85 ~~~v~~ik~~~~-lPvil 101 (286)
T 3vk5_A 85 EPYVAAVKAATP-LPVVL 101 (286)
T ss_dssp HHHHHHHHHHCS-SCEEE
T ss_pred HHHHHHHHHhCC-CCEEE
Confidence 999999998653 56554
No 253
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=28.53 E-value=46 Score=29.76 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=23.6
Q ss_pred hcCEEEEccCCCCChhHHHHHHHHHHHhC--CCCceeeec
Q 023301 96 YADRIILNKIDLVTETELGSLTERIKHIN--AMAPVKLAK 133 (284)
Q Consensus 96 ~Ad~ivlnK~D~~~~~~~~~~~~~l~~~n--p~a~i~~~~ 133 (284)
..-++|+||+|+.+..++..+++.+++.. -.++++.++
T Consensus 168 v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~s 207 (418)
T 2qag_C 168 VNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP 207 (418)
T ss_dssp SEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred CcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCC
Confidence 34578889999998877765444433221 135666555
No 254
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=28.13 E-value=38 Score=29.52 Aligned_cols=15 Identities=13% Similarity=0.022 Sum_probs=12.5
Q ss_pred eeceEEEEEcccchH
Q 023301 61 KLDGVITLVDSKHAM 75 (284)
Q Consensus 61 ~l~~vv~vvD~~~~~ 75 (284)
..+++|.|+|...+.
T Consensus 216 ~a~~iIfV~dls~~d 230 (353)
T 1cip_A 216 GVTAIIFCVALSDYD 230 (353)
T ss_dssp TCSEEEEEEEGGGGG
T ss_pred cCCEEEEEEECcccc
Confidence 578899999998853
No 255
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=26.06 E-value=1.7e+02 Score=27.05 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=12.5
Q ss_pred CCCCEEEEecCCCCC
Q 023301 28 GQFDHIVIETTGLAK 42 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~ 42 (284)
.++|+|||++++..+
T Consensus 439 ~~~D~vviD~~p~~~ 453 (589)
T 1ihu_A 439 AGKRFVVMDTAPTGH 453 (589)
T ss_dssp GGTSEEEESCCCCHH
T ss_pred cCCCEEEEcCCCCcc
Confidence 468999999998754
No 256
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=25.23 E-value=35 Score=26.39 Aligned_cols=44 Identities=5% Similarity=0.045 Sum_probs=29.2
Q ss_pred CCceeeeeeCch-------HHHHHHHHHHhhcCCCCEEEEecCCCC-CcHHHHH
Q 023301 3 NNGCLCCTVRGD-------LVKMLLQLAKKKQGQFDHIVIETTGLA-KPAPVIE 48 (284)
Q Consensus 3 ~~GCiCCs~~~d-------l~~~l~~l~~~~~~~~d~iiIE~sG~a-~p~~i~~ 48 (284)
..|||--+...+ +.+.|.++++ .++||.+.||-.=+. ++...+.
T Consensus 32 ~~G~I~t~~~~~~~~RL~~I~~~l~~~i~--~~~Pd~vaiE~~F~~~n~~sal~ 83 (166)
T 4ep4_A 32 HGEVVKTSPQEPAKERVGRIHARVLEVLH--RFRPEAVAVEEQFFYRQNELAYK 83 (166)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHHHH--HHCCSEEEEECCCCSSCSHHHHH
T ss_pred EeCeEECCCCCCHHHHHHHHHHHHHHHHH--HhCCCEEEEeehhhccChHHHHH
Confidence 457776554433 3455666666 689999999998765 4665544
No 257
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=25.08 E-value=51 Score=25.87 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=11.4
Q ss_pred CCCCEEEEecCCCC
Q 023301 28 GQFDHIVIETTGLA 41 (284)
Q Consensus 28 ~~~d~iiIE~sG~a 41 (284)
.++|+||||++|-.
T Consensus 107 ~~yD~viID~p~~l 120 (224)
T 1byi_A 107 QQADWVLVEGAGGW 120 (224)
T ss_dssp TTCSEEEEECSSST
T ss_pred HhCCEEEEEcCCcc
Confidence 57999999998544
No 258
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.53 E-value=1.8e+02 Score=20.22 Aligned_cols=23 Identities=9% Similarity=-0.119 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCceEEEE
Q 023301 197 EGTLDLDEVDDWLERLIEEKGEDLYRMK 224 (284)
Q Consensus 197 ~~~~~~~~l~~~l~~l~~~~~~~i~R~K 224 (284)
+...+.+.|.+++... +.|..++
T Consensus 25 p~~vte~dL~~lF~~f-----G~V~~v~ 47 (105)
T 1sjq_A 25 PIDVTEGEVISLGLPF-----GKVTNLL 47 (105)
T ss_dssp CTTSCHHHHHHHHHHH-----CCEEEEE
T ss_pred CCCCCHHHHHHHHHhc-----CCEEEEE
Confidence 4567788888877664 6676665
No 259
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=24.30 E-value=2.3e+02 Score=23.82 Aligned_cols=98 Identities=15% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCCEEEEecCCCCCc-HHHHHHhccc-cccccee--eeceEEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEcc
Q 023301 29 QFDHIVIETTGLAKP-APVIETFCTD-ELVSQYV--KLDGVITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNK 104 (284)
Q Consensus 29 ~~d~iiIE~sG~a~p-~~i~~~l~~~-~~l~~~~--~l~~vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK 104 (284)
..|.+++++.|..+- ......+... ..+...+ .-+-++.++|+.+-...+... .. ..+-.....|++||
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~~~~~------~~-~~~~~~~t~iivTh 256 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA------KK-FHEAVGLTGVIVTK 256 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH------HH-HHHHHCCSEEEEEC
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHHHHHH------HH-HHHHcCCcEEEEEC
Confidence 578999999998652 2222222100 0000000 112356799998754332210 11 12223468899999
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCceeeeccCCC
Q 023301 105 IDLVTETELGSLTERIKHINAMAPVKLAKYGSV 137 (284)
Q Consensus 105 ~D~~~~~~~~~~~~~l~~~np~a~i~~~~~g~v 137 (284)
.|.... ...+.......+ .+|.....|+-
T Consensus 257 ~d~~a~--gg~~l~i~~~~~--~pi~~ig~Ge~ 285 (304)
T 1rj9_A 257 LDGTAK--GGVLIPIVRTLK--VPIKFVGVGEG 285 (304)
T ss_dssp TTSSCC--CTTHHHHHHHHC--CCEEEEECSSS
T ss_pred Cccccc--ccHHHHHHHHHC--CCeEEEeCCCC
Confidence 986432 223333344443 46655555543
No 260
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=22.17 E-value=3e+02 Score=22.30 Aligned_cols=41 Identities=7% Similarity=0.062 Sum_probs=24.3
Q ss_pred CCCCEEEEecCCCCCcHHHHHHhcccccccceeeeceEEEEEcccchH
Q 023301 28 GQFDHIVIETTGLAKPAPVIETFCTDELVSQYVKLDGVITLVDSKHAM 75 (284)
Q Consensus 28 ~~~d~iiIE~sG~a~p~~i~~~l~~~~~l~~~~~l~~vv~vvD~~~~~ 75 (284)
..+|+|||+++|......+...+.. -..+.+|.|+.+....
T Consensus 117 ~~yD~ViID~~~~~~~~~~~~~~~~-------~~aD~viiv~~~~~~s 157 (289)
T 2afh_E 117 DDLDFVFYDVLGDVVCGGFAMPIRE-------NKAQEIYIVCSGEMMA 157 (289)
T ss_dssp TTCSEEEEEEECSSCCTTTTHHHHT-------TCCCEEEEEECSSHHH
T ss_pred cCCCEEEEeCCCccccchhhhhhhh-------hhCCEEEEEecCCHHH
Confidence 4799999999886433221111100 1345688888886644
No 261
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=21.88 E-value=1.9e+02 Score=19.55 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=37.9
Q ss_pred EEEEEcccchHHhhhhcCCccchHHHHHHHhhcCEEEEccCCCCChhHHHHHHHHHHHh
Q 023301 65 VITLVDSKHAMQHLNEVKPRFVVNEAVEQVAYADRIILNKIDLVTETELGSLTERIKHI 123 (284)
Q Consensus 65 vv~vvD~~~~~~~l~~~~~~~~~~~~~~Qi~~Ad~ivlnK~D~~~~~~~~~~~~~l~~~ 123 (284)
-|+++-|..|.+. ..+.++++.-..||+|=.++ +.++.+++..++...
T Consensus 6 ~Ivv~~P~sy~Da----------~~I~d~Lr~~~~VvvNL~~l-d~~~AqRivDF~sG~ 53 (87)
T 3p04_A 6 TIVPVELHSFEDA----------QVIGGAFRDGDAVVFDMSLL-SREEARRIVDFAAGL 53 (87)
T ss_dssp SCEEEECSSGGGH----------HHHHHHHHTTCCEEEECTTS-CHHHHHHHHHHHHHH
T ss_pred EEEEEecCcHHHH----------HHHHHHHHCCCEEEEECCCC-CHHHHHHHHHHhccc
Confidence 4778888887542 34679999999999998765 778888999988864
Done!