Query 023302
Match_columns 284
No_of_seqs 195 out of 1220
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:00:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 100.0 1.3E-59 2.8E-64 431.9 17.3 272 4-283 2-292 (294)
2 COG2119 Predicted membrane pro 100.0 1E-48 2.2E-53 344.7 19.3 183 74-281 1-184 (190)
3 PF01169 UPF0016: Uncharacteri 99.9 2.1E-24 4.5E-29 167.2 7.0 76 200-275 1-78 (78)
4 PF01169 UPF0016: Uncharacteri 99.9 1.9E-23 4.1E-28 161.8 7.5 76 77-152 1-78 (78)
5 COG2119 Predicted membrane pro 99.8 8.4E-20 1.8E-24 161.7 12.9 86 74-159 99-185 (190)
6 KOG2881 Predicted membrane pro 99.6 6E-17 1.3E-21 150.2 3.6 84 75-158 207-290 (294)
7 TIGR02840 spore_YtaF putative 98.2 7.5E-05 1.6E-09 67.3 15.3 51 113-163 36-86 (206)
8 COG4280 Predicted membrane pro 98.2 2.3E-05 5.1E-10 71.3 11.2 168 100-281 27-198 (236)
9 PRK11469 hypothetical protein; 98.0 0.00027 5.9E-09 63.1 14.6 161 93-281 17-184 (188)
10 PF01810 LysE: LysE type trans 97.7 0.0015 3.2E-08 56.5 14.4 168 95-282 12-191 (191)
11 COG1971 Predicted membrane pro 97.7 0.0013 2.8E-08 59.3 13.7 45 119-163 45-92 (190)
12 PF03596 Cad: Cadmium resistan 97.1 0.0044 9.5E-08 55.8 10.0 153 106-282 25-182 (191)
13 PF03741 TerC: Integral membra 96.5 0.21 4.6E-06 44.5 15.8 163 90-280 12-182 (183)
14 TIGR03718 R_switched_Alx integ 96.4 0.16 3.5E-06 48.9 15.6 183 80-281 64-269 (302)
15 COG4300 CadD Predicted permeas 96.4 0.014 3.1E-07 52.7 7.8 165 87-282 14-194 (205)
16 PRK10229 threonine efflux syst 95.9 0.53 1.1E-05 41.4 15.4 74 83-157 13-91 (206)
17 COG0730 Predicted permeases [G 95.9 0.24 5.2E-06 45.0 13.5 171 107-281 69-253 (258)
18 TIGR00949 2A76 The Resistance 95.8 0.15 3.2E-06 43.9 11.3 61 97-157 9-74 (185)
19 PF01914 MarC: MarC family int 95.5 0.47 1E-05 42.8 13.7 150 109-281 40-197 (203)
20 TIGR03716 R_switched_YkoY inte 95.4 0.14 3E-06 47.0 10.0 157 90-281 9-173 (215)
21 PRK10621 hypothetical protein; 95.1 1.3 2.8E-05 40.9 15.5 164 108-280 74-252 (266)
22 COG1280 RhtB Putative threonin 95.1 0.4 8.6E-06 43.0 11.8 68 89-157 20-92 (208)
23 TIGR00145 FTR1 family protein. 95.1 1.3 2.8E-05 42.2 15.7 155 106-279 38-199 (283)
24 PRK09304 arginine exporter pro 94.8 1.7 3.7E-05 38.6 14.8 74 83-157 13-89 (207)
25 TIGR03717 R_switched_YjbE inte 94.7 1.8 3.9E-05 38.4 14.6 152 90-280 14-174 (176)
26 PRK10019 nickel/cobalt efflux 94.6 1.9 4.2E-05 41.1 15.5 70 205-281 198-272 (279)
27 PRK10520 rhtB homoserine/homos 94.5 2.7 5.8E-05 37.0 15.3 75 82-157 13-92 (205)
28 COG0861 TerC Membrane protein 94.3 1.6 3.4E-05 41.1 14.1 184 79-282 18-212 (254)
29 PF01925 TauE: Sulfite exporte 93.3 3 6.6E-05 36.8 13.4 158 113-277 65-239 (240)
30 PF03239 FTR1: Iron permease F 93.1 2.8 6.1E-05 39.9 13.7 165 106-279 35-214 (306)
31 PRK10995 inner membrane protei 92.6 3 6.6E-05 37.9 12.7 48 109-157 44-93 (221)
32 PRK10958 leucine export protei 92.6 7.4 0.00016 34.8 16.0 73 85-158 20-97 (212)
33 COG4280 Predicted membrane pro 90.5 0.63 1.4E-05 43.0 5.8 62 215-277 17-80 (236)
34 TIGR00427 membrane protein, Ma 90.4 7.7 0.00017 35.0 12.7 152 108-282 42-200 (201)
35 TIGR02840 spore_YtaF putative 90.3 0.58 1.2E-05 42.3 5.4 53 230-282 30-82 (206)
36 PRK11111 hypothetical protein; 90.2 5.5 0.00012 36.4 11.7 50 107-157 44-95 (214)
37 PF13386 DsbD_2: Cytochrome C 88.4 17 0.00037 32.0 13.5 46 109-154 38-83 (199)
38 PRK00293 dipZ thiol:disulfide 87.8 15 0.00032 38.1 14.2 47 110-156 216-262 (571)
39 PRK10739 putative antibiotic t 87.2 13 0.00028 33.6 11.9 145 108-281 39-189 (197)
40 PRK10323 cysteine/O-acetylseri 86.7 21 0.00046 31.4 16.4 67 91-157 21-92 (195)
41 TIGR00779 cad cadmium resistan 86.6 2.1 4.5E-05 39.0 6.4 54 103-157 21-74 (193)
42 COG2814 AraJ Arabinose efflux 85.6 31 0.00068 34.5 14.6 54 94-147 123-176 (394)
43 PF11139 DUF2910: Protein of u 81.5 39 0.00084 30.1 16.8 49 109-157 34-88 (214)
44 TIGR00948 2a75 L-lysine export 80.6 36 0.00077 29.2 13.6 62 97-158 12-76 (177)
45 PF01810 LysE: LysE type trans 80.2 9.4 0.0002 32.8 7.7 20 139-158 171-190 (191)
46 PRK11469 hypothetical protein; 79.3 3 6.4E-05 37.3 4.4 41 241-282 48-88 (188)
47 PF02683 DsbD: Cytochrome C bi 78.6 47 0.001 29.4 13.9 47 109-157 47-93 (211)
48 COG2095 MarC Multiple antibiot 71.4 14 0.0003 33.8 6.6 146 109-281 43-194 (203)
49 PF02659 DUF204: Domain of unk 71.0 7.3 0.00016 28.6 4.0 36 239-275 32-67 (67)
50 PF13347 MFS_2: MFS/sugar tran 69.2 54 0.0012 31.3 10.5 42 239-280 268-309 (428)
51 COG2215 ABC-type uncharacteriz 69.0 1.2E+02 0.0026 29.7 14.8 88 74-161 55-154 (303)
52 PRK03699 putative transporter; 66.5 1.2E+02 0.0025 28.6 14.3 26 242-267 252-277 (394)
53 PF02659 DUF204: Domain of unk 66.0 23 0.00049 26.0 5.7 36 116-152 32-67 (67)
54 PRK11102 bicyclomycin/multidru 62.9 1.2E+02 0.0027 27.6 11.8 30 243-272 242-271 (377)
55 TIGR00779 cad cadmium resistan 62.7 33 0.00072 31.3 7.2 56 226-282 21-76 (193)
56 PF07690 MFS_1: Major Facilita 62.4 1.1E+02 0.0025 27.0 11.2 38 116-153 129-166 (352)
57 TIGR03718 R_switched_Alx integ 60.2 1.3E+02 0.0028 29.3 11.1 75 82-159 193-270 (302)
58 TIGR00900 2A0121 H+ Antiporter 59.2 1.3E+02 0.0028 26.7 14.0 32 122-153 142-173 (365)
59 PF03596 Cad: Cadmium resistan 58.3 53 0.0011 29.8 7.7 55 227-282 23-77 (191)
60 PF03699 UPF0182: Uncharacteri 55.6 1.8E+02 0.004 31.8 12.4 47 232-278 160-218 (774)
61 TIGR02718 sider_RhtX_FptX side 54.2 1.9E+02 0.0041 27.0 14.1 27 243-269 256-282 (390)
62 COG0730 Predicted permeases [G 54.2 46 0.00099 30.2 6.8 55 228-282 67-121 (258)
63 PRK10621 hypothetical protein; 53.2 46 0.00099 30.6 6.7 47 234-280 77-123 (266)
64 KOG2325 Predicted transporter/ 52.4 78 0.0017 32.7 8.7 84 198-281 266-354 (488)
65 PF07332 DUF1469: Protein of u 52.3 1E+02 0.0022 24.8 7.9 53 110-162 42-96 (121)
66 PRK10019 nickel/cobalt efflux 51.5 1E+02 0.0022 29.6 8.8 72 83-161 199-275 (279)
67 PF12270 Cyt_c_ox_IV: Cytochro 50.3 59 0.0013 28.2 6.4 34 142-176 42-75 (137)
68 PF01925 TauE: Sulfite exporte 49.3 64 0.0014 28.4 6.8 47 108-154 193-239 (240)
69 COG1971 Predicted membrane pro 49.2 40 0.00087 30.7 5.4 43 116-159 145-187 (190)
70 PRK01637 hypothetical protein; 47.1 58 0.0012 30.4 6.4 29 106-134 201-229 (286)
71 COG1283 NptA Na+/phosphate sym 46.9 3.7E+02 0.008 28.3 12.7 96 137-249 5-105 (533)
72 PF03739 YjgP_YjgQ: Predicted 45.7 1.2E+02 0.0025 28.4 8.2 77 74-157 273-353 (354)
73 PF04474 DUF554: Protein of un 45.5 2.6E+02 0.0056 26.1 12.4 82 198-281 100-204 (226)
74 PF11137 DUF2909: Protein of u 44.9 25 0.00054 26.6 2.9 38 11-49 4-41 (63)
75 PRK09304 arginine exporter pro 43.6 76 0.0016 28.1 6.3 43 118-160 157-203 (207)
76 TIGR00704 NaPi_cotrn_rel Na/Pi 43.5 3.1E+02 0.0068 26.5 11.3 94 138-248 3-101 (307)
77 PF06166 DUF979: Protein of un 42.7 2E+02 0.0043 28.3 9.3 47 234-280 170-216 (308)
78 TIGR00846 caca2 calcium/proton 40.4 3.7E+02 0.0079 26.4 12.2 21 139-159 169-189 (365)
79 PRK15071 lipopolysaccharide AB 40.3 2.8E+02 0.0062 26.2 10.0 63 95-157 286-353 (356)
80 COG4300 CadD Predicted permeas 39.0 2.9E+02 0.0062 25.5 9.2 76 206-282 10-88 (205)
81 COG2814 AraJ Arabinose efflux 36.7 4.4E+02 0.0095 26.5 11.0 52 95-146 66-117 (394)
82 PF13150 DUF3989: Protein of u 36.6 58 0.0013 25.9 4.0 30 133-162 20-49 (85)
83 PF03239 FTR1: Iron permease F 35.6 4E+02 0.0086 25.4 12.9 85 72-159 131-217 (306)
84 KOG1397 Ca2+/H+ antiporter VCX 34.8 1.4E+02 0.003 30.5 7.1 30 230-259 357-387 (441)
85 PRK00259 intracellular septati 34.5 1.1E+02 0.0025 27.3 5.9 47 233-281 22-68 (179)
86 PF04474 DUF554: Protein of un 33.8 4E+02 0.0086 24.9 9.8 86 69-156 94-202 (226)
87 PRK10995 inner membrane protei 33.2 1.4E+02 0.003 27.1 6.4 38 246-283 57-96 (221)
88 PRK15120 lipopolysaccharide AB 33.1 2.1E+02 0.0045 27.4 8.0 62 96-157 282-347 (366)
89 PF01595 DUF21: Domain of unkn 32.7 88 0.0019 26.3 4.8 36 111-146 86-125 (183)
90 PF02535 Zip: ZIP Zinc transpo 32.3 3.3E+02 0.0072 24.9 8.9 30 101-131 224-253 (317)
91 TIGR00949 2A76 The Resistance 32.0 96 0.0021 26.5 5.0 54 228-281 20-75 (185)
92 TIGR02230 ATPase_gene1 F0F1-AT 31.7 1.1E+02 0.0024 25.2 4.9 25 238-262 50-74 (100)
93 PRK10323 cysteine/O-acetylseri 31.5 1.2E+02 0.0026 26.6 5.6 22 136-157 174-195 (195)
94 PRK00293 dipZ thiol:disulfide 31.5 99 0.0022 32.1 5.8 46 234-279 217-262 (571)
95 PF03741 TerC: Integral membra 31.0 1.4E+02 0.0031 26.5 6.0 58 95-157 125-182 (183)
96 TIGR03716 R_switched_YkoY inte 30.9 2.2E+02 0.0048 26.2 7.4 56 103-161 121-176 (215)
97 TIGR00704 NaPi_cotrn_rel Na/Pi 30.3 5.1E+02 0.011 25.0 13.4 122 137-274 127-255 (307)
98 COG0795 Predicted permeases [G 29.0 2.6E+02 0.0056 26.7 7.8 63 95-157 292-359 (364)
99 TIGR00948 2a75 L-lysine export 28.4 1.4E+02 0.0031 25.4 5.4 55 228-282 21-77 (177)
100 KOG0569 Permease of the major 28.2 4.9E+02 0.011 26.9 10.0 39 236-274 310-348 (485)
101 COG0387 ChaA Ca2+/H+ antiporte 27.9 5.8E+02 0.013 25.6 10.1 46 213-258 267-317 (368)
102 PF14007 YtpI: YtpI-like prote 27.2 1.9E+02 0.0042 23.2 5.5 27 136-162 54-80 (89)
103 COG1238 Predicted membrane pro 27.0 4.4E+02 0.0096 23.2 9.1 89 72-161 18-113 (161)
104 PLN00028 nitrate transmembrane 26.5 6.2E+02 0.013 24.8 12.9 18 242-259 299-316 (476)
105 COG5249 RER1 Golgi protein inv 25.8 2.7E+02 0.0058 24.9 6.6 21 172-192 86-106 (180)
106 PRK13499 rhamnose-proton sympo 25.4 1.9E+02 0.0042 28.5 6.3 78 76-163 72-158 (345)
107 TIGR00893 2A0114 d-galactonate 25.4 4.8E+02 0.01 23.1 14.4 19 243-261 263-281 (399)
108 PRK10229 threonine efflux syst 25.1 3.3E+02 0.0071 23.8 7.2 77 204-281 9-92 (206)
109 PRK10599 calcium/sodium:proton 24.8 5.7E+02 0.012 25.5 9.5 30 229-258 287-317 (366)
110 PRK09669 putative symporter Ya 24.7 6.3E+02 0.014 24.2 12.9 35 242-276 275-309 (444)
111 PF11700 ATG22: Vacuole efflux 23.6 7.7E+02 0.017 24.9 12.0 48 110-157 198-245 (477)
112 PF03591 AzlC: AzlC protein; 23.4 1.8E+02 0.0038 24.7 5.0 47 90-136 95-143 (143)
113 PF07172 GRP: Glycine rich pro 23.1 58 0.0013 26.3 1.9 6 10-15 6-11 (95)
114 PF14007 YtpI: YtpI-like prote 22.6 1.9E+02 0.0041 23.3 4.7 24 259-282 54-77 (89)
115 PF08285 DPM3: Dolichol-phosph 22.6 1.8E+02 0.0039 23.3 4.6 42 138-179 35-77 (91)
116 PRK00259 intracellular septati 22.5 2.5E+02 0.0055 25.1 6.0 45 111-157 23-67 (179)
117 PF07857 DUF1632: CEO family ( 22.5 4E+02 0.0086 25.2 7.6 46 110-156 78-132 (254)
118 TIGR00902 2A0127 phenyl propri 22.5 6.4E+02 0.014 23.5 13.0 31 242-272 251-281 (382)
119 PRK10847 hypothetical protein; 22.3 2.7E+02 0.0059 25.0 6.3 33 102-134 149-181 (219)
120 PF11700 ATG22: Vacuole efflux 22.2 8.2E+02 0.018 24.7 13.1 48 234-281 199-246 (477)
121 COG2215 ABC-type uncharacteriz 22.1 2.2E+02 0.0048 27.9 5.8 67 215-281 76-151 (303)
122 PF06724 DUF1206: Domain of Un 22.0 1.5E+02 0.0032 22.1 3.8 24 138-161 47-70 (73)
123 PF01914 MarC: MarC family int 21.3 5.6E+02 0.012 23.0 8.1 72 90-161 123-200 (203)
124 COG1280 RhtB Putative threonin 21.1 2.6E+02 0.0057 24.9 5.9 21 137-157 185-205 (208)
125 PRK11128 putative 3-phenylprop 21.0 6.8E+02 0.015 23.3 13.2 31 120-150 140-170 (382)
126 PRK10520 rhtB homoserine/homos 21.0 2E+02 0.0043 25.2 5.0 55 228-282 38-94 (205)
127 TIGR00901 2A0125 AmpG-related 20.9 6.4E+02 0.014 22.9 17.3 26 244-269 258-283 (356)
128 TIGR00997 ispZ intracellular s 20.7 2.6E+02 0.0057 25.1 5.7 47 234-282 23-69 (178)
129 PF11364 DUF3165: Protein of u 20.4 4.2E+02 0.0091 21.2 6.1 48 110-164 31-78 (81)
130 PF04955 HupE_UreJ: HupE / Ure 20.1 2.2E+02 0.0047 25.4 5.0 47 230-277 133-179 (180)
131 PRK10958 leucine export protei 20.1 6.2E+02 0.013 22.4 8.2 20 138-157 190-209 (212)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.3e-59 Score=431.88 Aligned_cols=272 Identities=47% Similarity=0.707 Sum_probs=223.6
Q ss_pred cCCCcchhHHHHHHHHHHHHhhhhchhccccCCCCCchhhhhccccccccccccccccccccccCC-CCchHHHHHHHHH
Q 023302 4 VSNPVRFLFVALSIFSALSAISAQDVLFESDNEDPSRSAKDLGRRGLILSQDLENELGTIPLNIDS-GLGVFDAFIASFS 82 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~sF~ 82 (284)
.+|+.| +++.. +.++.....+++..+++.++ ..+..++-+...........++ +.++++ ..++.++|..||+
T Consensus 2 ~~s~~~-~~v~~-~~~l~~~~~~~~~~~~~~~~----~~V~~~~~~v~~l~~~~~a~~~-~~d~~~~~~s~~~~f~~SiS 74 (294)
T KOG2881|consen 2 KFSATR-LLVSL-IILLPFVTLSEADAVKDSDK----VDVKLSLIAVVTLITLAEAHKS-NADISSTASSFLQGFTASIS 74 (294)
T ss_pred CcchhH-HHHHH-HHHHHHHhhhhccccccchh----hhccCCccceeeccchhhcCcc-ccccccchHHHHHHHHHhhh
Confidence 457777 66665 55555555566555553111 2222222222222222221111 122333 4679999999999
Q ss_pred HHHHhhcccHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 023302 83 MIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMS 162 (284)
Q Consensus 83 lIflAElGDKTql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~ 162 (284)
|||++|+||||++++++|||||+|..||.|++.||.+||+|++++|+..++++|++|+++++++||++||+|+|||+|++
T Consensus 75 mI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg~~~ 154 (294)
T KOG2881|consen 75 MIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEGWEM 154 (294)
T ss_pred eeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhHHHHHhhhcc-------------CC-----CccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHh
Q 023302 163 DPKSGQKKEMEEVEEKLESG-------------QG-----KTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALA 224 (284)
Q Consensus 163 ~~~~~~~~e~eEve~~l~~~-------------~~-----~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LA 224 (284)
+|+++ +||+||+|+|++.. ++ ++..||++.++++|+|+++|.++|++||||||||+|++||
T Consensus 155 ~~~~~-~eE~eEVe~el~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~t~ffspifikaFsltF~aEwGDRSQlaTI~la 233 (294)
T KOG2881|consen 155 SPSEG-QEELEEVEAELAKREDELDRLEEGLPGSAETGSQKSKFRRKLTLFFSPIFIKAFSLTFLAEWGDRSQLATIALA 233 (294)
T ss_pred CCccc-hhhHHHHHHHHHhccchhhhhhhcCCCCCccchhhhhhhHHHHHhccHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 87765 88999999987541 11 2345777788899999999999999999999999999999
Q ss_pred cccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccCC
Q 023302 225 THKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYPP 283 (284)
Q Consensus 225 a~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~~ 283 (284)
++.||+.|++|+.+||.+||+++|+.|++++++|++|.+..++|++|+.||+..++.+|
T Consensus 234 A~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~i~~~~ 292 (294)
T KOG2881|consen 234 ADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLVYIFQGF 292 (294)
T ss_pred cccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999988776
No 2
>COG2119 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1e-48 Score=344.75 Aligned_cols=183 Identities=36% Similarity=0.549 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH
Q 023302 74 FDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGL 153 (284)
Q Consensus 74 ~~~f~~sF~lIflAElGDKTql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~ 153 (284)
++++..|.++|++||+|||||+++++||+||+|++|+.|+..|+..||.+++++|++.+.++|++++++..+++|+.||+
T Consensus 1 l~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav 80 (190)
T COG2119 1 LEALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAV 80 (190)
T ss_pred ChhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccC-CcEe
Q 023302 154 RLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKN-AVGV 232 (284)
Q Consensus 154 ~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~-~~~V 232 (284)
|++++. .+++ ||.+ .. ++ ..+|.++|+++|++|||||||++|++||++++ ||.|
T Consensus 81 ~~l~ed------k~~~---~e~~-------~~---~~------~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V 135 (190)
T COG2119 81 WMLIED------KEDD---EEAQ-------AA---SP------RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAV 135 (190)
T ss_pred HHhccc------cccc---cccc-------cc---cc------ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceee
Confidence 999722 1111 1111 00 11 15899999999999999999999999999875 6999
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302 233 AVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 233 ~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~ 281 (284)
++|+++||++||.++|++|+++++|+|+|.++.++|++|++||+..+|.
T Consensus 136 ~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~~~~~ 184 (190)
T COG2119 136 FAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALVLLWQ 184 (190)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887664
No 3
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.90 E-value=2.1e-24 Score=167.19 Aligned_cols=76 Identities=51% Similarity=0.726 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhhcChHHHHHHHHhccc--CCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 023302 200 FLESFILTFLAEWGDRSQIATIALATHK--NAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFS 275 (284)
Q Consensus 200 fl~aF~liFLAE~GDKTQLati~LAa~~--~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fG 275 (284)
|+++|.++|++|||||||++|++||+|| +|+.|++|+++|++++|.+++++|+++.+++|++++++++|++|++||
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 5799999999999999999999999998 899999999999999999999999999999999999999999999997
No 4
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.89 E-value=1.9e-23 Score=161.80 Aligned_cols=76 Identities=32% Similarity=0.456 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHhccC--CCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 023302 77 FIASFSMIIVSEIGDETFIIAALMAMRH--PKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFG 152 (284)
Q Consensus 77 f~~sF~lIflAElGDKTql~a~~LAar~--~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG 152 (284)
|+++|.++|++|+|||||++++.||+|| +++.|++|+.+|++++|++++++|+++++++|+++++++++++|++||
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l~~~ip~~~i~~~~~~lFl~fG 78 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWLASRIPERYIKWVAGALFLLFG 78 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
Confidence 5789999999999999999999999999 566799999999999999999999999999999999999999999987
No 5
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.82 E-value=8.4e-20 Score=161.71 Aligned_cols=86 Identities=23% Similarity=0.427 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHhccCCC-cchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 023302 74 FDAFIASFSMIIVSEIGDETFIIAALMAMRHPK-STVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFG 152 (284)
Q Consensus 74 ~~~f~~sF~lIflAElGDKTql~a~~LAar~~~-~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG 152 (284)
...|.++|.++|++|||||||++|+.||++|+. +.||+|+.+|+++|++++|+.|+++++++|++.++.++|++|++||
T Consensus 99 ~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fa 178 (190)
T COG2119 99 RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLLRFIAALLFLIFA 178 (190)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 349999999999999999999999999999997 6699999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 023302 153 LRLLYIA 159 (284)
Q Consensus 153 ~~~L~~a 159 (284)
+..+|+.
T Consensus 179 l~~~~~~ 185 (190)
T COG2119 179 LVLLWQV 185 (190)
T ss_pred HHHHHHH
Confidence 9999854
No 6
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.65 E-value=6e-17 Score=150.21 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 023302 75 DAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLR 154 (284)
Q Consensus 75 ~~f~~sF~lIflAElGDKTql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~ 154 (284)
..|+.+|+++|++|||||+|++|+.||++-+++.|++|+..++.+||.+||+.|++++++|+.+.+.+++|++|+.||+.
T Consensus 207 pifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~ 286 (294)
T KOG2881|consen 207 PIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYLASKISVRTVTLIGGILFIIFGLV 286 (294)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHHhhhheeEEEEEecchhHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 023302 155 LLYI 158 (284)
Q Consensus 155 ~L~~ 158 (284)
.+++
T Consensus 287 ~i~~ 290 (294)
T KOG2881|consen 287 YIFQ 290 (294)
T ss_pred HHhc
Confidence 9873
No 7
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=98.19 E-value=7.5e-05 Score=67.29 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023302 113 ALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSD 163 (284)
Q Consensus 113 a~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~ 163 (284)
......+|+.++..+|+.+.+++|+++-++++++++++.|+|+++|+++.+
T Consensus 36 ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~~~~~ 86 (206)
T TIGR02840 36 IAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNAFRPK 86 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334455899999999999999999999999999999999999999999854
No 8
>COG4280 Predicted membrane protein [Function unknown]
Probab=98.15 E-value=2.3e-05 Score=71.31 Aligned_cols=168 Identities=22% Similarity=0.269 Sum_probs=113.4
Q ss_pred HhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCcchhHHHH
Q 023302 100 MAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDP---KSGQKKEMEEVE 176 (284)
Q Consensus 100 LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~---~~~~~~e~eEve 176 (284)
...-|+++.-+.|+.+++++.-.++.++|..+ .++|.+++++++|++.+.||..-.+.+.|... +.++||. .|
T Consensus 27 vg~~~~wr~al~ga~lglalvl~l~lvlGk~L-~lvPln~lqiv~gvLLllFG~rw~Rsavrr~ag~rkg~~ee~---le 102 (236)
T COG4280 27 VGNIYKWRLALIGAVLGLALVLILTLVLGKLL-YLVPLNYLQIVSGVLLLLFGYRWIRSAVRRFAGIRKGGGEEK---LE 102 (236)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHccce-eeeechHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCchhh---Hh
Confidence 33444556688899999999999999999987 58999999999999999999999988776521 1121111 22
Q ss_pred HhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcc-cCCcEeeehHHHHHHHHHHHHHHHHHHhh
Q 023302 177 EKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATH-KNAVGVAVGATIGHTICTSLAVVGGSMLA 255 (284)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~-~~~~~V~~Ga~la~~l~t~laV~~G~~l~ 255 (284)
|.+.-++..+.. ++ -.+.++|-.+.+= |=.--++.+++.+. ..+..-..|+..|..+.-.++.++-+.++
T Consensus 103 E~~~ldq~e~g~----~~---la~l~~fk~v~Le--glEv~~iVialgaa~sqwleAi~gagfA~vlvlvl~~~lh~pla 173 (236)
T COG4280 103 EGIVLDQEEEGF----SK---LALLVVFKVVALE--GLEVSLIVIALGAASSQWLEAIMGAGFASVLVLVLTAILHSPLA 173 (236)
T ss_pred hhhhcccccccc----hh---hhHHHHhHHHHHh--hheeeeeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHhccHHh
Confidence 222211111111 11 1334444333321 22233455566544 34566778888888888888888877776
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302 256 SKISQRTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 256 ~~ip~~~i~~~agilFl~fGl~~L~~ 281 (284)
++|++.+++.+|.+...||.+=+-+
T Consensus 174 -rvpe~~lKfvag~lL~sfGtfWlge 198 (236)
T COG4280 174 -RVPEPHLKFVAGALLFSFGTFWLGE 198 (236)
T ss_pred -hCCchhHHHHHHHHHHHhhHHHhcc
Confidence 6999999999999999999864443
No 9
>PRK11469 hypothetical protein; Provisional
Probab=97.98 E-value=0.00027 Score=63.06 Aligned_cols=161 Identities=17% Similarity=0.284 Sum_probs=91.5
Q ss_pred HHHHHHHHhccCCC--cc--hhHH--HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023302 93 TFIIAALMAMRHPK--ST--VLSG--ALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKS 166 (284)
Q Consensus 93 Tql~a~~LAar~~~--~~--Vf~G--a~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~ 166 (284)
.+-+.+....|.++ +. .... ...-..+|+.++-.+|+++.+++|+ +-|++++.+.++.|.||+||+++.+++
T Consensus 17 aF~v~ia~G~~~~~~~~~~~~~~~l~~g~~q~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~~~~~~~- 94 (188)
T PRK11469 17 AFAASIGKGATLHKPKFSEALRTGLIFGAVETLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEGFRGADD- 94 (188)
T ss_pred HHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccc-
Confidence 44555666655432 11 1222 2223467888888899999999877 779999999999999999999874321
Q ss_pred CCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhc-ccCCcEeeehHHHHHHHHHH
Q 023302 167 GQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALAT-HKNAVGVAVGATIGHTICTS 245 (284)
Q Consensus 167 ~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa-~~~~~~V~~Ga~la~~l~t~ 245 (284)
+| +|.+. +.+.+ ..+..+..+.. | .--+-++++. ..+++...+-.-+-.++++.
T Consensus 95 ---~~-~~~~~-------~~~~~--------~~l~LaiAtSi-----D-AlavGi~~~~~g~~~~~~~~~ig~~s~~~~~ 149 (188)
T PRK11469 95 ---ED-EEPRR-------RHGFW--------LLVTTAIATSL-----D-AMAVGVGLAFLQVNIIATALAIGCATLIMST 149 (188)
T ss_pred ---cc-ccccc-------CCCHH--------HHHHHHHHHHH-----H-HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 10 11000 00000 11111111100 0 0001111221 12333333333344456777
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302 246 LAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 246 laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~ 281 (284)
.++.+|+.+++++ .++...++|++.+++|+..+++
T Consensus 150 ~G~~lG~~~g~~~-g~~a~~lgG~iLI~iGi~il~~ 184 (188)
T PRK11469 150 LGMMVGRFIGSII-GKKAEILGGLVLIGIGVQILWT 184 (188)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888777655 4678999999999999998764
No 10
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=97.72 E-value=0.0015 Score=56.46 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=94.5
Q ss_pred HHHHHHhccCCCcc---hhHHHHHHHHHHHHHHHHHhhhhccccc--hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 023302 95 IIAALMAMRHPKST---VLSGALSALFVMTVLSTGLGRIVPNLIS--RKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQK 169 (284)
Q Consensus 95 l~a~~LAar~~~~~---Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip--~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~ 169 (284)
+..+--+++++++. +.+|...+-.+...+++..-..+.+..| ..++++++++..+.+|.+++++. ++.+++
T Consensus 12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~----~~~~~~ 87 (191)
T PF01810_consen 12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSK----FSSKSS 87 (191)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc----cCcchh
Confidence 44555666776543 7789999988888888877776654333 45678889988889998888532 221111
Q ss_pred chhHHHHHhhhccCCCccccccc-cccchh---hHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHH
Q 023302 170 KEMEEVEEKLESGQGKTTFRRFF-SRFCTP---IFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTS 245 (284)
Q Consensus 170 ~e~eEve~~l~~~~~~~~~~~~~-~~~~~~---~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~ 245 (284)
+.++.+ .+...+.+++.. -...+| +|+.++...|+.+--+.+|...+.+ |..++..+...
T Consensus 88 -~~~~~~----~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~w~~ 151 (191)
T PF01810_consen 88 -TQSEAK----KQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISPEYSSTQFLVFIL-----------GIFLGSLLWFL 151 (191)
T ss_pred -hhhhhc----cccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCccccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 111111 000011111100 001111 3455555555554333444443333 44444444444
Q ss_pred HHHHHHHHhhhcCCHH---HHHHHHHHHHHHHHHHHhccC
Q 023302 246 LAVVGGSMLASKISQR---TVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 246 laV~~G~~l~~~ip~~---~i~~~agilFl~fGl~~L~~~ 282 (284)
.-...++.+.+++..+ ++++++|++|+.+|++.++++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 152 LLALLGSRLRRKFSSRRIRWINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455555555555443 889999999999999998864
No 11
>COG1971 Predicted membrane protein [Function unknown]
Probab=97.68 E-value=0.0013 Score=59.34 Aligned_cols=45 Identities=16% Similarity=0.353 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhhccccc---hhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023302 119 VMTVLSTGLGRIVPNLIS---RKHTNSAATVLYAFFGLRLLYIAWMSD 163 (284)
Q Consensus 119 l~t~LaV~~G~~l~~~ip---~~~~~~iagvlFl~FG~~~L~~a~~~~ 163 (284)
+.+.+.-++|.+..+++| ..+-||+++++..+.|+||+||+++++
T Consensus 45 ~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e~f~~~ 92 (190)
T COG1971 45 VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIEGFKNE 92 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence 344555556665555555 678899999999999999999998864
No 12
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=97.10 E-value=0.0044 Score=55.85 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=90.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCC
Q 023302 106 KSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGK 185 (284)
Q Consensus 106 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~ 185 (284)
++.|.+|-.++..+.-..|...+..+. ++|++|+--.-|++=+.+|++.++ +.+ |+ |++|++++.++
T Consensus 25 ~~~I~~GqylG~~~Lv~~Sl~~~~~l~-~ip~~wiLGlLGliPI~lGi~~l~---~~~-~~----~e~~~~~~~~~---- 91 (191)
T PF03596_consen 25 RRQIVIGQYLGFTILVLASLLGAFGLL-FIPPEWILGLLGLIPIYLGIKALF---SGE-DD----DEEEAEEKLNS---- 91 (191)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHH---cCC-Cc----ccccccccccc----
Confidence 466999999999999888888877765 999999978888889999999886 222 11 11222222111
Q ss_pred ccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCC-----H
Q 023302 186 TTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS-----Q 260 (284)
Q Consensus 186 ~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip-----~ 260 (284)
++.+ +.+ -+...+.+|-=||+==+=+=-+|+.. +.=+.-..+-..++.++-+.++++++++=+ +
T Consensus 92 ~~~~--------~~i-~~Va~iTiAnGgDNigIYiP~Fa~~s--~~~l~v~l~vF~ilv~v~c~la~~l~~~p~i~~~le 160 (191)
T PF03596_consen 92 PKSN--------SLI-LTVAAITIANGGDNIGIYIPLFASLS--LAELIVILIVFLILVGVWCFLAYKLARIPIIAEFLE 160 (191)
T ss_pred cccc--------chh-HHhhhhhhhcCCCeEEEeehhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 0000 112 22222333334554322222222211 111111223334555666777777775432 6
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 023302 261 RTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 261 ~~i~~~agilFl~fGl~~L~~~ 282 (284)
|+=+++.-++|++.|++-+++.
T Consensus 161 ryg~~l~p~v~I~LGi~Il~es 182 (191)
T PF03596_consen 161 RYGRWLVPIVYIGLGIYILIES 182 (191)
T ss_pred HhcccHHHHHHHHhCceeeEeC
Confidence 7778999999999999988765
No 13
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=96.49 E-value=0.21 Score=44.47 Aligned_cols=163 Identities=15% Similarity=0.201 Sum_probs=90.8
Q ss_pred ccHHHHHHHHHhc---cCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023302 90 GDETFIIAALMAM---RHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKS 166 (284)
Q Consensus 90 GDKTql~a~~LAa---r~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~ 166 (284)
+|+-.+++++... +++++..+.|...|.++=.++- ..|.++-+.. .++++++|+.-+.-|.+++++. .
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i-~~~~~ll~~~--~~i~~igG~~Ll~~a~k~~~~~------~ 82 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFI-FLASWLLSIF--PWILLIGGLFLLYIAIKLLHEE------R 82 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhc------c
Confidence 5665555554433 2234568999999996655554 4454444432 5555555554444444444321 1
Q ss_pred CCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcCh-----HHHHHHHHhcccCCcEeeehHHHHHH
Q 023302 167 GQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDR-----SQIATIALATHKNAVGVAVGATIGHT 241 (284)
Q Consensus 167 ~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDK-----TQLati~LAa~~~~~~V~~Ga~la~~ 241 (284)
++++|.++.+++ + + ..+.+ .+.++.+...+ |.=|= +=+++.+++ .+++.++.|..++..
T Consensus 83 ~~d~~~~~~~~~-~-~--~~~~~-------~~~~~~~v~~I---~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~ 146 (183)
T PF03741_consen 83 DEDPENAEVEEE-K-K--FFPVS-------KSSLWLAVIQI---ELADLVFSLDSVLAAVGIT--DDFFIVITGNIISIL 146 (183)
T ss_pred ccccchhhhhhh-h-c--cccch-------hHHHHHHHHHH---HHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHH
Confidence 111111111111 0 0 00000 12344444433 33342 334555555 778999999999998
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhc
Q 023302 242 ICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYF 280 (284)
Q Consensus 242 l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~ 280 (284)
..-..+-.+.+++.+ -.++++.++.+-...|+.++.
T Consensus 147 ~m~~~~~~~~~~l~~---~p~l~~~~~~~L~~ig~~li~ 182 (183)
T PF03741_consen 147 LMRFLSFLLAKLLER---FPYLKYLAAAILGFIGVKLIL 182 (183)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888776 467888888888888877654
No 14
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=96.43 E-value=0.16 Score=48.91 Aligned_cols=183 Identities=17% Similarity=0.183 Sum_probs=96.6
Q ss_pred HHHHHHHhh---cccHHHHHHHHHhcc-CC----CcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 023302 80 SFSMIIVSE---IGDETFIIAALMAMR-HP----KSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 151 (284)
Q Consensus 80 sF~lIflAE---lGDKTql~a~~LAar-~~----~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~F 151 (284)
.|....+-| -+|+-+..+++++.+ -| ++..+.|...|++.=.+ -+.+|.++-+.+| | ++.+|
T Consensus 64 ~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i-~i~~g~~Li~~f~--w-------i~~if 133 (302)
T TIGR03718 64 EFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAI-FIALGAALIEQFH--W-------VLYIF 133 (302)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhH--H-------HHHHH
Confidence 344444444 389999999988763 33 35578899888876544 4555555544333 3 46667
Q ss_pred HHHHHHHHHhcCCCCCCcchhHHHHHhh----h-----cc--CCCccccccccc-cchhhHHHHHHHHHHhhhcChHHH-
Q 023302 152 GLRLLYIAWMSDPKSGQKKEMEEVEEKL----E-----SG--QGKTTFRRFFSR-FCTPIFLESFILTFLAEWGDRSQI- 218 (284)
Q Consensus 152 G~~~L~~a~~~~~~~~~~~e~eEve~~l----~-----~~--~~~~~~~~~~~~-~~~~~fl~aF~liFLAE~GDKTQL- 218 (284)
|++++|.++++-.+++++++.++ ... . ++ .+.+-..|..++ ..+| ++.+ +..-|.=|-..=
T Consensus 134 G~fLi~~a~k~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~~tp-l~~v---li~Ie~~DlvFsl 207 (302)
T TIGR03718 134 GAFLLYTGIKMLFEGDEEDDPEN--NPLVRLLRRVLPVTDKYHGDRFFVRENGKRYATP-LFLV---LVLVETTDLIFAV 207 (302)
T ss_pred HHHHHHHHHHHHhhcccccCccc--cHHHHHHHhhcCCCccccCCceeeeecCceecCc-HHHH---HHHHHHHHHHHhh
Confidence 77777776665322111111111 110 0 00 011100011111 1223 3333 334455553321
Q ss_pred --HHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302 219 --ATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 219 --ati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~ 281 (284)
.....|..++|+.|+.+...|.+..-.+--++.+++.+ -.++++.++.+-...|+.++..
T Consensus 208 DSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~r---f~~L~~~~a~iL~fIGvkmll~ 269 (302)
T TIGR03718 208 DSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLER---FHYLKYGLAVILVFIGVKMLLH 269 (302)
T ss_pred ccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHh
Confidence 12223334679999999888777555555555665554 3567777777777778776654
No 15
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.014 Score=52.73 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=91.6
Q ss_pred hhcccHHHHHHHHHhccC---CCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023302 87 SEIGDETFIIAALMAMRH---PKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSD 163 (284)
Q Consensus 87 AElGDKTql~a~~LAar~---~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~ 163 (284)
|-==|--=+....+|.+- .++.+++|=.++....-..|.. +.++.+++|++|+--.-|..=+..|+|.++.+++
T Consensus 14 aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~-~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~d~-- 90 (205)
T COG4300 14 ATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLL-FAFVLNFVPEEWILGLLGLIPIYLGIKVLILGDD-- 90 (205)
T ss_pred HhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHH-HHHHHhhCcHHHHHHHHhHHHHHHhhHHhhcccC--
Confidence 333344445555666554 2345899988888776555544 4447789999999988899999999999873322
Q ss_pred CCCCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHH--
Q 023302 164 PKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHT-- 241 (284)
Q Consensus 164 ~~~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~-- 241 (284)
|+ +||.+|+++....++ . +.+....+|-.==||+-- =..+.|++--....
T Consensus 91 --d~----e~~~~e~L~~~~~k~----l--------v~tV~~vT~AscG~DNIg----------vyvP~F~tl~~~~llv 142 (205)
T COG4300 91 --DG----EEEAKEELAFKKNKN----L--------VGTVAIVTFASCGADNIG----------VFVPYFATLNLANLLV 142 (205)
T ss_pred --cC----chhhhHHHHhccccc----e--------EEEEEEEEEeccCCcceE----------EEeeeeecccHHHHHH
Confidence 11 123333333110110 0 001000001000112100 02333433322222
Q ss_pred ------HHHHHHHHHHHHhhhcCC-----HHHHHHHHHHHHHHHHHHHhccC
Q 023302 242 ------ICTSLAVVGGSMLASKIS-----QRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 242 ------l~t~laV~~G~~l~~~ip-----~~~i~~~agilFl~fGl~~L~~~ 282 (284)
++-.+=+..++.+++.=| +++=|++-.+++++.|++.+++.
T Consensus 143 ~l~vF~v~I~iL~~~a~~la~ip~I~evlEk~sr~i~~~V~I~LGlfIl~E~ 194 (205)
T COG4300 143 ALLVFLVMIYILVFLAQKLAQIPPIGEVLEKYSRWIVAFVYIGLGLFILYEN 194 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHhhheeEEeC
Confidence 223344556777776444 67889999999999999998875
No 16
>PRK10229 threonine efflux system; Provisional
Probab=95.93 E-value=0.53 Score=41.45 Aligned_cols=74 Identities=9% Similarity=0.168 Sum_probs=48.2
Q ss_pred HHHHhhcccHHHHHHHHHhccCCCcc---hhHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHH
Q 023302 83 MIIVSEIGDETFIIAALMAMRHPKST---VLSGALSALFVMTVLSTGLGRIVPNLISR--KHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 83 lIflAElGDKTql~a~~LAar~~~~~---Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~--~~~~~iagvlFl~FG~~~L~ 157 (284)
++...-.|. ..+.++--+.+|+++. ..+|...|..+...++...-..+....|. ..+++++++-.+.+|..+++
T Consensus 13 ~~~~~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~~~~~ 91 (206)
T PRK10229 13 IVALMSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGYQMLR 91 (206)
T ss_pred HHHhcCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444565 6677777777877543 57788888888888877766666555553 34566665555667776664
No 17
>COG0730 Predicted permeases [General function prediction only]
Probab=95.90 E-value=0.24 Score=45.03 Aligned_cols=171 Identities=14% Similarity=0.068 Sum_probs=97.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCc
Q 023302 107 STVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKT 186 (284)
Q Consensus 107 ~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~ 186 (284)
..+-.-...-+...+.+...+|.++..++|+++.+.+-+++.+..++++++.-.+..++ ++.++.......-...-
T Consensus 69 ~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 144 (258)
T COG0730 69 GNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGPRLAKAE----DRAARLRPLLFALALLI 144 (258)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccccccc----ccccccCcchhHHHHHH
Confidence 33666666677777789999999999999999999989999999999998742110000 00000000000000000
Q ss_pred c-ccccccccch--hhHHHHHHHHHHhhhcChHHHHHHHHhc---------ccC--CcEeeehHHHHHHHHHHHHHHHHH
Q 023302 187 T-FRRFFSRFCT--PIFLESFILTFLAEWGDRSQIATIALAT---------HKN--AVGVAVGATIGHTICTSLAVVGGS 252 (284)
Q Consensus 187 ~-~~~~~~~~~~--~~fl~aF~liFLAE~GDKTQLati~LAa---------~~~--~~~V~~Ga~la~~l~t~laV~~G~ 252 (284)
. .--.++-... .-+...-.+..+....+|--.+|-.... .|- .-.+-......+.+.+.++..+|.
T Consensus 145 g~~~G~~sG~~G~GgG~~~vp~l~~~~~~~~~~~~~ts~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~g~~~G~~lG~ 224 (258)
T COG0730 145 GFLAGFLSGLFGVGGGFGIVPALLLLLLLPLKLAVATSLAIILNTASNGAALYLFALGAVDWPLALLLAVGSILGAYLGA 224 (258)
T ss_pred HHHHHHHHhcccCCchHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000000 1123333444444454443333322211 011 111222222267888899999999
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302 253 MLASKISQRTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 253 ~l~~~ip~~~i~~~agilFl~fGl~~L~~ 281 (284)
++.+++|++.++++-+.+.+..++.+++.
T Consensus 225 ~l~~~~~~~~lr~~~~~~~~~~~~~~~~~ 253 (258)
T COG0730 225 RLARRLSPKVLRRLFALVLLAVAIKLLLR 253 (258)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 18
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=95.84 E-value=0.15 Score=43.94 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=40.1
Q ss_pred HHHHhccCCCc---chhHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHH
Q 023302 97 AALMAMRHPKS---TVLSGALSALFVMTVLSTGLGRIVPNLISR--KHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 97 a~~LAar~~~~---~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~--~~~~~iagvlFl~FG~~~L~ 157 (284)
++.-+.+++++ .+.+|..++..+...+++..-..+-+..|. .++++++++..+.+|..+++
T Consensus 9 ~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~ 74 (185)
T TIGR00949 9 VMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLR 74 (185)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555432 377888999999888888755555555553 55677777666678877664
No 19
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=95.55 E-value=0.47 Score=42.75 Aligned_cols=150 Identities=15% Similarity=0.235 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCc
Q 023302 109 VLSGALSALFVMTVLSTGLGRIVPNL--ISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKT 186 (284)
Q Consensus 109 Vf~Ga~~Al~l~t~LaV~~G~~l~~~--ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~ 186 (284)
..-.+..+++++ .+..++|+++-++ ++..-.++.+|++.+..|+.|++ .+++.++.++.|+.|.+ + ..+.
T Consensus 40 a~~a~~~a~~il-l~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~----~~~~~~~~~~~~~~~~~-~--~~~~ 111 (203)
T PF01914_consen 40 ARRASIIAFIIL-LIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLF----GSPSSEKSSPDEKEEAK-D--AEDI 111 (203)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC----CCCcccccccchhhhhc-c--cccc
Confidence 343444444444 4556678777664 58888999999999999999986 22221111111111100 0 0111
Q ss_pred cccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCC---cEeeehHHHHHHHHHHHHHHHHHHhhhcCC---H
Q 023302 187 TFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNA---VGVAVGATIGHTICTSLAVVGGSMLASKIS---Q 260 (284)
Q Consensus 187 ~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~---~~V~~Ga~la~~l~t~laV~~G~~l~~~ip---~ 260 (284)
...+. . +--=-|.-|=-+++.++++++. .....++.+...+.+.+.-..++++.+++. .
T Consensus 112 ai~PL----a-----------~PllaGPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~ 176 (203)
T PF01914_consen 112 AIVPL----A-----------IPLLAGPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGL 176 (203)
T ss_pred eeccc----c-----------hhhccChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH
Confidence 11110 0 1111244444455566665543 344555566666667777777888888775 4
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 023302 261 RTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 261 ~~i~~~agilFl~fGl~~L~~ 281 (284)
+.+.++.|++-.++|+.++..
T Consensus 177 ~vi~Ri~Glil~aiavq~i~~ 197 (203)
T PF01914_consen 177 QVITRIMGLILAAIAVQMILS 197 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999999877654
No 20
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=95.42 E-value=0.14 Score=46.99 Aligned_cols=157 Identities=22% Similarity=0.187 Sum_probs=85.9
Q ss_pred ccHHHHHHHHHh---ccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023302 90 GDETFIIAALMA---MRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKS 166 (284)
Q Consensus 90 GDKTql~a~~LA---ar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~ 166 (284)
+|+-.+++++.. .+++++..+.|...|.++=-++.......+ + ..++++ ++|+.++|.+++.-.++
T Consensus 9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll-~---~~~l~~-------iGG~~Ll~~~~k~l~~~ 77 (215)
T TIGR03716 9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLI-K---FWWIKA-------IGALYLLYLAIKHFRKK 77 (215)
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHH-------HHHHHHHHHHHHHHHhc
Confidence 455555554433 122345588999999887666655544433 3 225444 44455555554442111
Q ss_pred CCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcCh-----HHHHHHHHhcccCCcEeeehHHHHHH
Q 023302 167 GQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDR-----SQIATIALATHKNAVGVAVGATIGHT 241 (284)
Q Consensus 167 ~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDK-----TQLati~LAa~~~~~~V~~Ga~la~~ 241 (284)
+++++.+|.+ .+.. .+.|+.+...+ |.=|= +=++.+++ ..+++.++.|..++..
T Consensus 78 ~~~~~~~~~~-------~~~~---------~~~f~~av~~I---~~~DlvFSlDSV~A~~gi--t~~~~ii~~g~~~sIl 136 (215)
T TIGR03716 78 KKGKEDEEAE-------KKKA---------HSGFWRTVLKV---ELMDIAFSVDSILAAVAL--SGQFWVVFLGGIIGIL 136 (215)
T ss_pred cccccccccc-------cccc---------cchHHHHHHHH---HHHHHHHHhhhHHHHHHh--ccChHHHHHHHHHHHH
Confidence 1111111100 0000 01234443333 33342 23344444 3688999999999988
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302 242 ICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 242 l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~ 281 (284)
..-..+-.+.+++.+ -.++++.+..+-...|+.++.+
T Consensus 137 ~lr~~s~~l~~li~r---~p~L~~~~~~iL~~ig~kLil~ 173 (215)
T TIGR03716 137 IMRFAATIFVKLLER---FPELETAAFLLIGWIGVKLLLE 173 (215)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777665 4677788888778888887763
No 21
>PRK10621 hypothetical protein; Provisional
Probab=95.14 E-value=1.3 Score=40.86 Aligned_cols=164 Identities=12% Similarity=0.064 Sum_probs=88.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhh---ccCC
Q 023302 108 TVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLE---SGQG 184 (284)
Q Consensus 108 ~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~---~~~~ 184 (284)
.+=.-...-+.+.+.+.+.+|.++..++|+++++.+-+++.+..++++++. .+.+ ++++.++...... .+-
T Consensus 74 ~v~~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~---~~~~--~~~~~~~~~~~~~~~~~G~- 147 (266)
T PRK10621 74 VVNLADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM---PKLG--EEDRQRRLYGLPFALIAGG- 147 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC---Cccc--cccccccccchHHHHHHHH-
Confidence 344455566777889999999999999999999999988888888888752 1111 0000000000000 000
Q ss_pred Cccccccccccch--hhHHHHHHHHHHhhhcChHHHHHHH-------H---hcccCCcEeeehHHHHHHHHHHHHHHHHH
Q 023302 185 KTTFRRFFSRFCT--PIFLESFILTFLAEWGDRSQIATIA-------L---ATHKNAVGVAVGATIGHTICTSLAVVGGS 252 (284)
Q Consensus 185 ~~~~~~~~~~~~~--~~fl~aF~liFLAE~GDKTQLati~-------L---Aa~~~~~~V~~Ga~la~~l~t~laV~~G~ 252 (284)
.--.++-+.. ..++....+..+..+.-|....|.. + ......-.+-.-..+.+...+.++..+|.
T Consensus 148 ---~~G~lsG~~G~GgG~~~v~~l~~~~~~~~~~a~~ts~~~~~~~~~~~~~~~~~~G~v~~~~~l~l~~g~~~G~~lG~ 224 (266)
T PRK10621 148 ---CVGFYDGFFGPGAGSFYALAFVTLCGFNLAKATAHAKVLNATSNIGGLLLFILGGKVIWATGFVMLVGQFLGARLGA 224 (266)
T ss_pred ---HHHHHhcccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 1111111222222332222222110 0 00000001111223445667788999999
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHHHHHhc
Q 023302 253 MLASKISQRTVATIGGLLFLCFSLSSYF 280 (284)
Q Consensus 253 ~l~~~ip~~~i~~~agilFl~fGl~~L~ 280 (284)
.+.+++|++.++++...+-+..|+.+++
T Consensus 225 ~l~~~~~~~~lr~~~~~ll~~~~i~~~~ 252 (266)
T PRK10621 225 RLVLSKGQKLIRPMIVIVSAVMSAKLLY 252 (266)
T ss_pred HHHHHcCchHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887754
No 22
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=95.12 E-value=0.4 Score=43.00 Aligned_cols=68 Identities=10% Similarity=0.129 Sum_probs=39.5
Q ss_pred cccHHHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHH-hhhhccccch-hHHHHHHHHHHHHHHHHHHH
Q 023302 89 IGDETFIIAALMAMRHPKS---TVLSGALSALFVMTVLSTGL-GRIVPNLISR-KHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 89 lGDKTql~a~~LAar~~~~---~Vf~Ga~~Al~l~t~LaV~~-G~~l~~~ip~-~~~~~iagvlFl~FG~~~L~ 157 (284)
-|.-+ +.++.-+++++++ .+-+|..++..+...+++.. +..+...-.. ..++++++.-.+.+|..+++
T Consensus 20 PGP~~-~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~~~~r 92 (208)
T COG1280 20 PGPDN-LLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGWKALR 92 (208)
T ss_pred CCccH-HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55443 4445556666543 37788888888877777664 3444332222 33566666655566666654
No 23
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=95.08 E-value=1.3 Score=42.19 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=85.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhccccc---hh----HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHh
Q 023302 106 KSTVLSGALSALFVMTVLSTGLGRIVPNLIS---RK----HTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEK 178 (284)
Q Consensus 106 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip---~~----~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~ 178 (284)
+++|+.|+.+|++++-++++.+-......-. ++ .+.+++.++....++||...+-+. .+|.|++
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el~eg~~~lvAv~~l~~m~~Wm~~~~~~~---------~~~i~~~ 108 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKELLEGIFGVIAVVMLSYMGLWMLRMQRKW---------RVKIERQ 108 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 5679999999999998888877665443322 33 356677888888899998533221 1233333
Q ss_pred hhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcC
Q 023302 179 LESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKI 258 (284)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~i 258 (284)
.++...+. . ..+..+..+|+.++ ==|=-|=+--.+.+...+...+..|+.+|.++...++.++= ..+.++
T Consensus 109 ~~~al~~~--~-----~~~al~~l~flaV~--REG~EtVlF~~g~~~~~~~~~~~gg~~~Gl~~~~~~g~li~-~~~~~i 178 (283)
T TIGR00145 109 LVQALKRK--R-----SGWAIALIAFIAVV--REGLETVLFLAGFQQGSHATAYIGPAVAGLIVAVVVGVLLY-RGGSRL 178 (283)
T ss_pred HHHHHhcC--c-----chhHHHHHHHHHHH--HhhhHHHHhHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH-HHHhhC
Confidence 32110100 0 01235555555443 00111111111211112222233357777766655555544 446899
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 023302 259 SQRTVATIGGLLFLCFSLSSY 279 (284)
Q Consensus 259 p~~~i~~~agilFl~fGl~~L 279 (284)
|.+..-.+.+++-++++...+
T Consensus 179 ~l~~FF~~t~~lL~llAagl~ 199 (283)
T TIGR00145 179 SLKIFFILSSSLLLFIAAGLL 199 (283)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888777766544
No 24
>PRK09304 arginine exporter protein; Provisional
Probab=94.77 E-value=1.7 Score=38.59 Aligned_cols=74 Identities=7% Similarity=0.046 Sum_probs=40.0
Q ss_pred HHHHhhcccHHHHHHHHHhccCCCc-chhHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHH
Q 023302 83 MIIVSEIGDETFIIAALMAMRHPKS-TVLSGALSALFVMTVLSTGLGRIVPNLISR--KHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 83 lIflAElGDKTql~a~~LAar~~~~-~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~--~~~~~iagvlFl~FG~~~L~ 157 (284)
+.+.+-.|.-- +.++.-+.++++. ....|...+..+...+++..-..+-...|. ..+++++++-.+.+|..+++
T Consensus 13 ~~~~~tPGP~~-~~v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLlyLg~~~~r 89 (207)
T PRK09304 13 AAMILPLGPQN-AFVMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFK 89 (207)
T ss_pred HHHHhccChHH-HHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455432 3333445555432 367788888888877766655554433343 23445555544557766664
No 25
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=94.66 E-value=1.8 Score=38.35 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=90.1
Q ss_pred ccHHHHHHHHHhccCC----CcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023302 90 GDETFIIAALMAMRHP----KSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPK 165 (284)
Q Consensus 90 GDKTql~a~~LAar~~----~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~ 165 (284)
+|+-.++++ .+.+.| ++....|...|+++...........+. -.+.++++|++-+..|..+++ +++
T Consensus 14 ~DN~~vi~~-~t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~----~~~~~iaGGllLl~ia~~ml~-----~~~ 83 (176)
T TIGR03717 14 GDNAVVIAL-AARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA----IPFLKLIGGLLLLWIGWKLLL-----EEE 83 (176)
T ss_pred HHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHh-----ccc
Confidence 688777777 344444 245788999999888777666555444 366677777777777777764 111
Q ss_pred CCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHH-----HHHHHHhcccCCcEeeehHHHHH
Q 023302 166 SGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQ-----IATIALATHKNAVGVAVGATIGH 240 (284)
Q Consensus 166 ~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQ-----Lati~LAa~~~~~~V~~Ga~la~ 240 (284)
+ ++|.+++ .+ ..|+.+...+ |+=|=.. ++..+. ++.+.+.++.|..++.
T Consensus 84 ~-----~~~~~~~-----~~------------~~~~~~v~~I---~~~D~~fS~DsV~a~~~~-~~~~~~li~~g~~i~i 137 (176)
T TIGR03717 84 E-----EQGGDVK-----GS------------TTLWAAIKTI---VIADAVMSLDNVLAVAGA-AHGHLGLLIFGLLLSI 137 (176)
T ss_pred c-----ccccccc-----cc------------CcHHHHHHHH---HHHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHH
Confidence 0 0111100 00 1234443333 3333222 222222 3457788888888887
Q ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhc
Q 023302 241 TICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYF 280 (284)
Q Consensus 241 ~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~ 280 (284)
.+.-..+-.+.+++.+ -.++++.++.+-...|+.+++
T Consensus 138 ~~m~~~s~~~~~~~~~---~p~l~~~~~~~L~~ig~kl~~ 174 (176)
T TIGR03717 138 PIIVWGSTLILKLMDR---FPWIIYIGAALLGYVAGEMIV 174 (176)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 7776666666666665 467778887777778887765
No 26
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=94.60 E-value=1.9 Score=41.09 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=46.8
Q ss_pred HHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcC--CHHHHH---HHHHHHHHHHHHHHh
Q 023302 205 ILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKI--SQRTVA---TIGGLLFLCFSLSSY 279 (284)
Q Consensus 205 ~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~i--p~~~i~---~~agilFl~fGl~~L 279 (284)
++.|..-+|+=+.=+...++. -+|..+.+.+...+.+...+...++. ..++++ ++++++=+++|+++.
T Consensus 198 VLL~a~~lg~~~~Gi~~vlaf-------slGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~ 270 (279)
T PRK10019 198 VLLICIQLKALTLGATLVLSF-------SIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMG 270 (279)
T ss_pred HHHHHHHhchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544444443 35777777777777766666666666 456666 999999999999877
Q ss_pred cc
Q 023302 280 FY 281 (284)
Q Consensus 280 ~~ 281 (284)
|-
T Consensus 271 ~~ 272 (279)
T PRK10019 271 VH 272 (279)
T ss_pred HH
Confidence 63
No 27
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=94.50 E-value=2.7 Score=37.05 Aligned_cols=75 Identities=15% Similarity=0.081 Sum_probs=45.4
Q ss_pred HHHHHhhcccHHHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHHhhhhccccchh--HHHHHHHHHHHHHHHHHH
Q 023302 82 SMIIVSEIGDETFIIAALMAMRHPKS---TVLSGALSALFVMTVLSTGLGRIVPNLISRK--HTNSAATVLYAFFGLRLL 156 (284)
Q Consensus 82 ~lIflAElGDKTql~a~~LAar~~~~---~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~--~~~~iagvlFl~FG~~~L 156 (284)
..+...--|.- .+..+.-+++++++ ...+|...|..+...++...-..+-...|.- .++++++.-.+.+|.+++
T Consensus 13 ~~~~~~sPGP~-~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~ 91 (205)
T PRK10520 13 SIILSLSPGSG-AINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQW 91 (205)
T ss_pred HHHHhcCCchh-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445543 45555566666543 2677999999998887766655554444433 346666655566777766
Q ss_pred H
Q 023302 157 Y 157 (284)
Q Consensus 157 ~ 157 (284)
+
T Consensus 92 ~ 92 (205)
T PRK10520 92 R 92 (205)
T ss_pred h
Confidence 4
No 28
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=94.34 E-value=1.6 Score=41.11 Aligned_cols=184 Identities=21% Similarity=0.196 Sum_probs=103.6
Q ss_pred HHHHHHHHhhc---ccHHHHHHHHHhccCC----CcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHH
Q 023302 79 ASFSMIIVSEI---GDETFIIAALMAMRHP----KSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFF 151 (284)
Q Consensus 79 ~sF~lIflAEl---GDKTql~a~~LAar~~----~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~F 151 (284)
.++..+.+-|. +|+-.+++++ +.+.| ++..+.|...|++.=.++ ...|.++-+.-+ .+|.+|
T Consensus 18 ~~l~tl~~lE~vL~iDN~iviai~-~~~Lp~~qr~ral~~Gl~~A~v~R~~l-l~~~s~Ll~l~~---------~l~~~f 86 (254)
T COG0861 18 VALLTLILLEIVLGIDNAIVIAIL-ASKLPPKQRKKALFIGLAGALVLRIIL-LASISWLLTLTQ---------PLLYIF 86 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH---------HHHHHH
Confidence 45556666664 8988777654 44444 345788988888765554 444555544322 244456
Q ss_pred HHHHHHHHHhcCCC--CCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhh--hcChHHHHHHHHhccc
Q 023302 152 GLRLLYIAWMSDPK--SGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAE--WGDRSQIATIALATHK 227 (284)
Q Consensus 152 G~~~L~~a~~~~~~--~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE--~GDKTQLati~LAa~~ 227 (284)
|...+|.++++--+ .+..++..|.-++++.+....+..+ . . ...|+.+...+-++- +.=-|=+++.+++ .
T Consensus 87 g~~L~~~~~~ll~~~~~~~~k~~~~~~~~~~~~~~~~~~~~--~-~-~~~f~~ai~~I~i~D~vFSlDSV~Aa~g~~--~ 160 (254)
T COG0861 87 GLYLLWRDIKLLLGGLFLLFKATKELHERLEGEEFFVNGKL--K-K-ATPFWGAIIQIELADLVFSLDSVIAAVGMA--G 160 (254)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHhhhhccccccccccc--c-c-cCcHHHHHHHHHHHHHHHhhhHHHHHHHHh--c
Confidence 66666666555211 1111111111112221110000000 0 1 134566665555443 2223556666666 6
Q ss_pred CCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccC
Q 023302 228 NAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 228 ~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~ 282 (284)
+|+.++.|...|....-..+-.+.+++-+ -.++.+.+..+-+..|+.++.+.
T Consensus 161 ~~~im~~a~i~aI~~m~~aa~~l~~ll~r---~p~l~~~~~~iL~~IG~kli~~~ 212 (254)
T COG0861 161 HPFVMVTAVIFAILVMRFAAFLLARLLER---HPTLKYLALVILLFIGVKLILEG 212 (254)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH---chHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999988887777777777765 35677777777778888877665
No 29
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=93.27 E-value=3 Score=36.82 Aligned_cols=158 Identities=17% Similarity=0.118 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCccc-ccc
Q 023302 113 ALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTF-RRF 191 (284)
Q Consensus 113 a~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~~~-~~~ 191 (284)
...-+.....+.+.+|.++..++|+++++.+.++.-+.++.+++++-.+.+++ ++.+..+.....-.+ .. --.
T Consensus 65 ~~~~~~~~~~~g~~iG~~l~~~l~~~~l~~~~~~~ll~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g--~~~~G~ 138 (240)
T PF01925_consen 65 IVLPLIIGALIGVVIGAWLLSLLPDDILKLIFGLFLLLLAIYMLLKKRRKTPK----SRSSPPKRWLLFLLG--GLFIGF 138 (240)
T ss_pred hhhhhhhHhHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHhcccccccc----ccccccchhhhhhhh--HHHhhH
Confidence 34455677788889999999999999999999999999999988621110011 000000000000000 00 000
Q ss_pred cccc---chhhHHHHHHHHHHhhhcChHHHHHHHHhc-------------ccCCcEeeehHHHHHHHHHHHHHHHHHHhh
Q 023302 192 FSRF---CTPIFLESFILTFLAEWGDRSQIATIALAT-------------HKNAVGVAVGATIGHTICTSLAVVGGSMLA 255 (284)
Q Consensus 192 ~~~~---~~~~fl~aF~liFLAE~GDKTQLati~LAa-------------~~~~~~V~~Ga~la~~l~t~laV~~G~~l~ 255 (284)
.+-. ..+++... .+..+.-...|.+.+|..... ......-.+...+.+.....++..+|+++.
T Consensus 139 ~~G~~g~ggg~~~~~-~~~~~~~~~~~~~~at~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~lG~~~~ 217 (240)
T PF01925_consen 139 LSGLFGIGGGPLLVP-LLLYLFGLDPKKARATSAFFFFFSSVAALISFLILGDVDWPMLLLSLILLPGAFLGAFLGAKLA 217 (240)
T ss_pred HHhhhhccccccccc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000000 011111222333333322110 111112233444457788889999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHH
Q 023302 256 SKISQRTVATIGGLLFLCFSLS 277 (284)
Q Consensus 256 ~~ip~~~i~~~agilFl~fGl~ 277 (284)
+++|+++++++..++.++.|+.
T Consensus 218 ~~i~~~~~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 218 RKIPQKVFRRIFLILLLLSGLK 239 (240)
T ss_pred HhCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888875
No 30
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=93.11 E-value=2.8 Score=39.92 Aligned_cols=165 Identities=21% Similarity=0.227 Sum_probs=91.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhcccc------chh----HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH-
Q 023302 106 KSTVLSGALSALFVMTVLSTGLGRIVPNLI------SRK----HTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEE- 174 (284)
Q Consensus 106 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~i------p~~----~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eE- 174 (284)
+++|+.|+..|++.+..++..+-.....+- .++ .+..++.++-....+||...+-+.. +|.|+
T Consensus 35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~~~~~------~~~~~~ 108 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASLVIGAVFAVIFYTLSGDYWGISEELFEGAISLIAVALITWMVFWMRRHGRKMK------GEWEDK 108 (306)
T ss_pred hheeeecHhHHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------hhHHHH
Confidence 478999999999999988887766544322 222 3344555566666777765321111 11111
Q ss_pred HHHhhhcc--CCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhccc--CCcEeeehHHHHHHHHHHHHHHH
Q 023302 175 VEEKLESG--QGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHK--NAVGVAVGATIGHTICTSLAVVG 250 (284)
Q Consensus 175 ve~~l~~~--~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~--~~~~V~~Ga~la~~l~t~laV~~ 250 (284)
.+...+.+ +.+.....-..+..+..|..+|+.+ +=| |=-|=+.-.++.+.. +...+..|+..|.++...++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~ 186 (306)
T PF03239_consen 109 LAKALSSGSEDARASQKDEGGGSKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLL 186 (306)
T ss_pred HHHHHhhccchhhhhhhccccchhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 0000000000001135566666333 222 445555556665543 36778888888888888888877
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHHh
Q 023302 251 GSMLASKISQRTVATIGGLLFLCFSLSSY 279 (284)
Q Consensus 251 G~~l~~~ip~~~i~~~agilFl~fGl~~L 279 (284)
-+. ..++|.+..-.+.+++-++.+..++
T Consensus 187 ~~~-~~~i~~~~~f~~~~~~ll~~aa~L~ 214 (306)
T PF03239_consen 187 YRG-LIRISLRSFFIITGVLLLLIAAGLL 214 (306)
T ss_pred HHH-HHhcChHHHHHHHHHHHHHHHHHHH
Confidence 665 4578988888888776555554443
No 31
>PRK10995 inner membrane protein; Provisional
Probab=92.62 E-value=3 Score=37.91 Aligned_cols=48 Identities=25% Similarity=0.402 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHHHHHHH
Q 023302 109 VLSGALSALFVMTVLSTGLGRIVPNL--ISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 109 Vf~Ga~~Al~l~t~LaV~~G~~l~~~--ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
..-.+..+.+++. +..+.|+.+-++ ++....++.+|++.+.+|+.|++
T Consensus 44 a~~~~~~a~~ill-~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~ 93 (221)
T PRK10995 44 ALMASVYVFAIMM-VAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLF 93 (221)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444443 666777776664 46778899999999999999985
No 32
>PRK10958 leucine export protein LeuE; Provisional
Probab=92.57 E-value=7.4 Score=34.80 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=42.3
Q ss_pred HHhhcccHHHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHHH
Q 023302 85 IVSEIGDETFIIAALMAMRHPKS---TVLSGALSALFVMTVLSTGLGRIVPNLISR--KHTNSAATVLYAFFGLRLLYI 158 (284)
Q Consensus 85 flAElGDKTql~a~~LAar~~~~---~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~--~~~~~iagvlFl~FG~~~L~~ 158 (284)
...--|...- ..+.-+.+++++ ...+|..++..+...+++..-..+.+..|. ..+++++++-.+.+|.+++++
T Consensus 20 ~~~sPGP~~~-~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~~~ 97 (212)
T PRK10958 20 IVLLPGPNSL-YVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKMLRA 97 (212)
T ss_pred HhcCCchHHH-HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555443 344455555543 267788888888877777544444333332 334666666556688877754
No 33
>COG4280 Predicted membrane protein [Function unknown]
Probab=90.51 E-value=0.63 Score=43.00 Aligned_cols=62 Identities=23% Similarity=0.303 Sum_probs=53.8
Q ss_pred hHHHHHHHHhcc--cCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHH
Q 023302 215 RSQIATIALATH--KNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLS 277 (284)
Q Consensus 215 KTQLati~LAa~--~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~ 277 (284)
-+...+++.+-. +++..-++|+.+|+++.-.++..+|+.+. .+|.+++++++|++.+.||-.
T Consensus 17 lvEa~aIa~avg~~~~wr~al~ga~lglalvl~l~lvlGk~L~-lvPln~lqiv~gvLLllFG~r 80 (236)
T COG4280 17 LVEAGAIAAAVGNIYKWRLALIGAVLGLALVLILTLVLGKLLY-LVPLNYLQIVSGVLLLLFGYR 80 (236)
T ss_pred HHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHHHHHHcccee-eeechHHHHHHHHHHHHHHHH
Confidence 456667777753 57788899999999999999999999876 799999999999999999964
No 34
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=90.36 E-value=7.7 Score=35.01 Aligned_cols=152 Identities=15% Similarity=0.136 Sum_probs=78.6
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-chhHHHHHhhhccCC
Q 023302 108 TVLSGALSALFVMTVLSTGLGRIVPNL--ISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQK-KEMEEVEEKLESGQG 184 (284)
Q Consensus 108 ~Vf~Ga~~Al~l~t~LaV~~G~~l~~~--ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~-~e~eEve~~l~~~~~ 184 (284)
...-.+..+++++- +..+.|+++-++ ++..-.++.+|++.+..|+.|+. .++++.++ +|.+|.+++ .
T Consensus 42 ia~~~~l~a~~ill-~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~----~~~~~~~~~~~~~~~~~~-----~ 111 (201)
T TIGR00427 42 IAKKANISSFIILL-IFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLS----GEGEDKQHKDEKEESAEI-----D 111 (201)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC----CCCccccccccccccccc-----c
Confidence 34555555555554 566677776664 57788999999999999999984 21111111 111110100 0
Q ss_pred Ccccccc-ccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCC---H
Q 023302 185 KTTFRRF-FSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS---Q 260 (284)
Q Consensus 185 ~~~~~~~-~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip---~ 260 (284)
+....+. .+-.+.|--+ +.++++-+|-.+.++. ...+.+.....+.+.+.-..++++.+++. .
T Consensus 112 ~iaivPLa~PllaGPGaI-ttvi~l~~~~~~~~~~------------~~~~~ai~~~~~~~~~~l~~s~~l~~~LG~~g~ 178 (201)
T TIGR00427 112 SIAVVPLALPLIAGPGAI-TTTMVLGARASSIGYK------------FLVVLAIALVALITWLLFRYSAFIIRRLGRTGI 178 (201)
T ss_pred CeeeeecccccccCcHHH-HHHHHHHhccccHHHH------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 0011110 0011223222 2233333332211111 11222333344445555566777777774 5
Q ss_pred HHHHHHHHHHHHHHHHHHhccC
Q 023302 261 RTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 261 ~~i~~~agilFl~fGl~~L~~~ 282 (284)
+.+.++.|++-.++|+.++.++
T Consensus 179 ~il~Ri~GliL~aIaVq~i~~G 200 (201)
T TIGR00427 179 NVITRIMGLLLAAIAVEFIVTG 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 6778999999999999887654
No 35
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=90.31 E-value=0.58 Score=42.30 Aligned_cols=53 Identities=8% Similarity=0.186 Sum_probs=43.5
Q ss_pred cEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccC
Q 023302 230 VGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 230 ~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~ 282 (284)
+...+-..+-+.+++.++..+|+.+.+++|+++-+++++++++.+|++++++.
T Consensus 30 ~~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~~~ 82 (206)
T TIGR02840 30 FLSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIYNA 82 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445688899999999999999999999999999999999998753
No 36
>PRK11111 hypothetical protein; Provisional
Probab=90.19 E-value=5.5 Score=36.42 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=37.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHHHHHHH
Q 023302 107 STVLSGALSALFVMTVLSTGLGRIVPNL--ISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 107 ~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~--ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
+..+-.+..+.+++. +..++|+++-++ |+..-.++.+|++.+.+|+.|++
T Consensus 44 ~ia~~a~l~a~~ill-~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~ 95 (214)
T PRK11111 44 KTNLTANLSVAIILL-ISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMIS 95 (214)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 345555555555555 668889888775 47788999999999999999984
No 37
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=88.38 E-value=17 Score=31.98 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 023302 109 VLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLR 154 (284)
Q Consensus 109 Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~ 154 (284)
-.+|=+.+..+.-.++..+|+.+......++++.+.+++...++++
T Consensus 38 y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~~~~~~~~l~ 83 (199)
T PF13386_consen 38 YNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIGILLGLLGLF 83 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 3567777778888888888888876655455666655555555554
No 38
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=87.84 E-value=15 Score=38.12 Aligned_cols=47 Identities=9% Similarity=0.229 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 023302 110 LSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLL 156 (284)
Q Consensus 110 f~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L 156 (284)
.+|..+.+.+..+++..+|..+...+-..|+..+.+++|+++|+.++
T Consensus 216 ~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 216 VQGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 56888888888888888888776555556788888999999999886
No 39
>PRK10739 putative antibiotic transporter; Provisional
Probab=87.16 E-value=13 Score=33.58 Aligned_cols=145 Identities=12% Similarity=0.230 Sum_probs=75.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhccc--cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCC
Q 023302 108 TVLSGALSALFVMTVLSTGLGRIVPNL--ISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGK 185 (284)
Q Consensus 108 ~Vf~Ga~~Al~l~t~LaV~~G~~l~~~--ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~ 185 (284)
...-.+..+.+++- +..++|+.+-++ ++..-.++.+|++.+.+|+.|++ .++++ +++|.+|.+|
T Consensus 39 ia~~a~~~a~~ill-~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~----~~~~~-~~~~~~~~~~-------- 104 (197)
T PRK10739 39 IMIRELLIALLVML-VFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIF----PSAEG-NSSGLPAGEE-------- 104 (197)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc----CCCcc-cccccccccC--------
Confidence 34445555554444 667778877665 57888999999999999999984 22111 1111111110
Q ss_pred cccccc-ccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCC---HH
Q 023302 186 TTFRRF-FSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASKIS---QR 261 (284)
Q Consensus 186 ~~~~~~-~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip---~~ 261 (284)
....+. .+-.+.|--+++ ++..-.|.+++ ......+.+...+.+.+.-..++++.+++. .+
T Consensus 105 ~avvPLa~PllaGPGaItt-vi~l~~~~~~~--------------~~~~~~ai~~~~~~~~l~l~~s~~i~~~LG~~g~~ 169 (197)
T PRK10739 105 PFLVPLAIPLVAGPSILAT-LMLLSHQYPNQ--------------MGHLVIALLIAWGGTFVILLQSSLFLRLLGEKGVN 169 (197)
T ss_pred ceeeecccccccCcHHHHH-HHHHHhhccch--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 011110 011223333332 22333332221 111112222333344444455666666664 56
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 023302 262 TVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 262 ~i~~~agilFl~fGl~~L~~ 281 (284)
.+.++.|++-.++|+..+..
T Consensus 170 vi~RimGllLaaiavq~i~~ 189 (197)
T PRK10739 170 ALERLMGLILVMLSTQMFLD 189 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999877654
No 40
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=86.72 E-value=21 Score=31.35 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=39.8
Q ss_pred cHHHHHHHHHhccCCCc---chhHHHHHHHHHHHHHHHHHhhhhccccchh--HHHHHHHHHHHHHHHHHHH
Q 023302 91 DETFIIAALMAMRHPKS---TVLSGALSALFVMTVLSTGLGRIVPNLISRK--HTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 91 DKTql~a~~LAar~~~~---~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~--~~~~iagvlFl~FG~~~L~ 157 (284)
.=+.+..+.-+.+++++ ....|...|..+...++......+.+..|.- .+++++++-.+..|.++++
T Consensus 21 GP~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~ 92 (195)
T PRK10323 21 GPNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIAT 92 (195)
T ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666676543 3788999999998777765554444333332 3455554433457766653
No 41
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=86.61 E-value=2.1 Score=38.96 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=44.2
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 023302 103 RHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 103 r~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
+++++.+.+|-.++....-..|+..+..+ .++|++|+--.-|++=+..|+|-++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl-~~iP~~wIlGlLGliPI~lGi~~l~ 74 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFGV-NLIPEKWVLGLLGLIPIYLGIKVAI 74 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHHH-HhCCHHHHHhHHhHHHHHHHHHHHh
Confidence 56677899999999988888888755544 6999999977777878899999886
No 42
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=85.55 E-value=31 Score=34.49 Aligned_cols=54 Identities=26% Similarity=0.274 Sum_probs=36.2
Q ss_pred HHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHH
Q 023302 94 FIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVL 147 (284)
Q Consensus 94 ql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvl 147 (284)
.-+++-++-.+++..-..-...++.+-+++++=+|.++.+++.-++.-.+.+++
T Consensus 123 ~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l 176 (394)
T COG2814 123 AALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVL 176 (394)
T ss_pred HHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444445555566666777777888888888888888888866555544
No 43
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=81.46 E-value=39 Score=30.12 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccc------cchhHHHHHHHHHHHHHHHHHHH
Q 023302 109 VLSGALSALFVMTVLSTGLGRIVPNL------ISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 109 Vf~Ga~~Al~l~t~LaV~~G~~l~~~------ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
.++|...+............+.+.+. ....+++++.|++++.+|++...
T Consensus 34 f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lGv~ll~~a~~~~~ 88 (214)
T PF11139_consen 34 FLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQLVLGVLLLLLAVRVWR 88 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777777777766633 34567788999999999988865
No 44
>TIGR00948 2a75 L-lysine exporter.
Probab=80.63 E-value=36 Score=29.18 Aligned_cols=62 Identities=5% Similarity=-0.043 Sum_probs=38.9
Q ss_pred HHHHhccCCCc-chhHHHHHHHHHHHHHHHHHhhhhccccch--hHHHHHHHHHHHHHHHHHHHH
Q 023302 97 AALMAMRHPKS-TVLSGALSALFVMTVLSTGLGRIVPNLISR--KHTNSAATVLYAFFGLRLLYI 158 (284)
Q Consensus 97 a~~LAar~~~~-~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~--~~~~~iagvlFl~FG~~~L~~ 158 (284)
.+..++++++- ...+|...+..+...++++.-..+-+..|. .++++++++-.+.+|..+++.
T Consensus 12 vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~ 76 (177)
T TIGR00948 12 VLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKT 76 (177)
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445442 367899999999888877766655544443 235666665556688777653
No 45
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=80.24 E-value=9.4 Score=32.77 Aligned_cols=20 Identities=30% Similarity=0.379 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023302 139 HTNSAATVLYAFFGLRLLYI 158 (284)
Q Consensus 139 ~~~~iagvlFl~FG~~~L~~ 158 (284)
+++.+++++++.+|++++++
T Consensus 171 ~i~~~~g~~li~~av~l~~~ 190 (191)
T PF01810_consen 171 WINRISGLLLIGFAVYLLYS 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 88999999999999999974
No 46
>PRK11469 hypothetical protein; Provisional
Probab=79.33 E-value=3 Score=37.33 Aligned_cols=41 Identities=10% Similarity=-0.036 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccC
Q 023302 241 TICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 241 ~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~ 282 (284)
.++..++-.+|+++.+++|+ +-|++++.+.+..|+|++++.
T Consensus 48 ~~m~~~g~~~G~~l~~~i~~-~~~~i~~~lL~~lG~~mi~e~ 88 (188)
T PRK11469 48 TLTPLIGWGMGMLASRFVLE-WNHWIAFVLLIFLGGRMIIEG 88 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999999777 669999999999999999864
No 47
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=78.60 E-value=47 Score=29.39 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 023302 109 VLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 109 Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
..+|....+.+.......+|+++.+. ..+...+.+++.+++|+.++.
T Consensus 47 f~~G~~~~~~~lG~~~~~~g~~~~~~--~~~~~~i~g~~~i~~Gl~~l~ 93 (211)
T PF02683_consen 47 FVLGFALVFALLGLGAGALGSFFGQI--SPWLYIIAGVLLILFGLSLLG 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 34577777888888888888877643 468889999999999998874
No 48
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=71.40 E-value=14 Score=33.76 Aligned_cols=146 Identities=21% Similarity=0.235 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcc--ccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCc
Q 023302 109 VLSGALSALFVMTVLSTGLGRIVPN--LISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKT 186 (284)
Q Consensus 109 Vf~Ga~~Al~l~t~LaV~~G~~l~~--~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~ 186 (284)
..-....|+.++- +..++|+++-+ -++....++.+|++-+..|+.|++. +++ .++++.||.+++ + -
T Consensus 43 ~~ra~i~a~~ill-~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~----~~~-~~~~~~e~~~~~-~-----i 110 (203)
T COG2095 43 ALRASIIALLILL-VFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFG----PTS-RPKKKREEGQED-S-----I 110 (203)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcC----CcC-cCCCCcccCccC-C-----e
Confidence 4555555555544 44566776665 4688889999999999999999962 111 111111121110 0 0
Q ss_pred cccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccC-CcEeeehHHHHHHHHHHHHHHHHHHhhhcC---CHHH
Q 023302 187 TFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKN-AVGVAVGATIGHTICTSLAVVGGSMLASKI---SQRT 262 (284)
Q Consensus 187 ~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~-~~~V~~Ga~la~~l~t~laV~~G~~l~~~i---p~~~ 262 (284)
...+ ...|. =-|+-|==+++.++.+++ ...+.+++.+...+.+.+.-....++.+.+ ..+.
T Consensus 111 aivP----LA~Pl-----------iaGPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~i~r~lG~~G~~~ 175 (203)
T COG2095 111 AIVP----LAIPL-----------IAGPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSRIMRLLGKTGLNA 175 (203)
T ss_pred eeec----ccCcc-----------ccCcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 01111 125555556666776654 234444455555556666666666666666 4677
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 023302 263 VATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 263 i~~~agilFl~fGl~~L~~ 281 (284)
+.++-|++-.++|+.+...
T Consensus 176 ~~RimGllL~al~vq~i~~ 194 (203)
T COG2095 176 LTRIMGLLLAALGVQMILD 194 (203)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7889999999999876543
No 49
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=71.05 E-value=7.3 Score=28.62 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 023302 239 GHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFS 275 (284)
Q Consensus 239 a~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fG 275 (284)
-..+.+.++..+|+++.+++ .++.+++++++++.+|
T Consensus 32 ~~~~~~~~G~~~G~~~~~~~-~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 32 FQFIMPLLGLLLGRRLGRFI-GSYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC
Confidence 34677788999999999855 4779999999998876
No 50
>PF13347 MFS_2: MFS/sugar transport protein
Probab=69.17 E-value=54 Score=31.32 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhc
Q 023302 239 GHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYF 280 (284)
Q Consensus 239 a~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~ 280 (284)
...+...++..+..++.+|+..+..-..+.+++....++...
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~ 309 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF 309 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence 345666777777888899998888877777777776665443
No 51
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=69.00 E-value=1.2e+02 Score=29.66 Aligned_cols=88 Identities=19% Similarity=0.230 Sum_probs=55.9
Q ss_pred HHHHHHHHH--HHHHhhccc-HHHHHHHHHhccCC-CcchhHHHHHHHHH--------HHHHHHHHhhhhccccchhHHH
Q 023302 74 FDAFIASFS--MIIVSEIGD-ETFIIAALMAMRHP-KSTVLSGALSALFV--------MTVLSTGLGRIVPNLISRKHTN 141 (284)
Q Consensus 74 ~~~f~~sF~--lIflAElGD-KTql~a~~LAar~~-~~~Vf~Ga~~Al~l--------~t~LaV~~G~~l~~~ip~~~~~ 141 (284)
+.-...||. +.=..|-|- |+-+++-+.+.+-+ +..+.++-.+++.= .-.+.|+-+....-..+..|++
T Consensus 55 w~li~~SflyGvlHAlgPGHgKaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~lE 134 (303)
T COG2215 55 WTLIPLSFLYGVLHALGPGHGKAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPWLE 134 (303)
T ss_pred HHHHHHHHHHHHHhccCCCcchHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHHHH
Confidence 333333443 334455553 77777777776665 33466555544321 1223333445555667889999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 023302 142 SAATVLYAFFGLRLLYIAWM 161 (284)
Q Consensus 142 ~iagvlFl~FG~~~L~~a~~ 161 (284)
.++.++-+.+|+|++|+.+|
T Consensus 135 ~~S~~Ll~~~G~w~~~r~lr 154 (303)
T COG2215 135 LISFLLLILLGLWLLWRTLR 154 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887
No 52
>PRK03699 putative transporter; Provisional
Probab=66.55 E-value=1.2e+02 Score=28.59 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHH
Q 023302 242 ICTSLAVVGGSMLASKISQRTVATIG 267 (284)
Q Consensus 242 l~t~laV~~G~~l~~~ip~~~i~~~a 267 (284)
++..++.+.+.++.+|++.+.+-...
T Consensus 252 ~~~~ig~~~~g~l~dr~~~~~~l~~~ 277 (394)
T PRK03699 252 MAYMVGMWIFSFIVRFFDLQRILTVL 277 (394)
T ss_pred HHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 45566777777788888777655443
No 53
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=66.01 E-value=23 Score=25.97 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHH
Q 023302 116 ALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFG 152 (284)
Q Consensus 116 Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG 152 (284)
-..+++.++..+|+.+.++++ ++.+++++++++++|
T Consensus 32 ~~~~~~~~G~~~G~~~~~~~~-~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 32 FQFIMPLLGLLLGRRLGRFIG-SYAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
Confidence 356788889999999998554 778999999988765
No 54
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=62.87 E-value=1.2e+02 Score=27.64 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 023302 243 CTSLAVVGGSMLASKISQRTVATIGGLLFL 272 (284)
Q Consensus 243 ~t~laV~~G~~l~~~ip~~~i~~~agilFl 272 (284)
...++...+.++.+|+..+.+...+.++..
T Consensus 242 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~ 271 (377)
T PRK11102 242 FLFVMTIINSRFVRRVGALNMLRFGLWIQF 271 (377)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 344455556667778877766655544433
No 55
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=62.68 E-value=33 Score=31.26 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=44.4
Q ss_pred ccCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccC
Q 023302 226 HKNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 226 ~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~ 282 (284)
+++++.+.+|--+|..+--..++.++. ....+|++|+--.-|++=+.+|++.++.+
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~-gl~~iP~~wIlGlLGliPI~lGi~~l~~~ 76 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAF-GVNLIPEKWVLGLLGLIPIYLGIKVAIKG 76 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHH-HHHhCCHHHHHhHHhHHHHHHHHHHHhcc
Confidence 468899999999998766656655444 35699999998888998899999877654
No 56
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=62.38 E-value=1.1e+02 Score=27.04 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHH
Q 023302 116 ALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGL 153 (284)
Q Consensus 116 Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~ 153 (284)
+..+-..++-.+|.++.+..+.++.-++.+++.+...+
T Consensus 129 ~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 129 GFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 34444455556666666666667776777776666555
No 57
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=60.16 E-value=1.3e+02 Score=29.28 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=53.6
Q ss_pred HHHHHhhcccHHHH---HHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH
Q 023302 82 SMIIVSEIGDETFI---IAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYI 158 (284)
Q Consensus 82 ~lIflAElGDKTql---~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~ 158 (284)
..+..-|.=|=.+= +.+..|...+++.|+.+-..|...+-.+.-++.+++.++ .++++.++++-...|++|+.+
T Consensus 193 ~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf---~~L~~~~a~iL~fIGvkmll~ 269 (302)
T TIGR03718 193 LVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERF---HYLKYGLAVILVFIGVKMLLH 269 (302)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHh
Confidence 33444566665552 344555556788899999988888777777777777654 467888888888999999974
Q ss_pred H
Q 023302 159 A 159 (284)
Q Consensus 159 a 159 (284)
.
T Consensus 270 ~ 270 (302)
T TIGR03718 270 A 270 (302)
T ss_pred h
Confidence 3
No 58
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=59.21 E-value=1.3e+02 Score=26.72 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=16.2
Q ss_pred HHHHHHhhhhccccchhHHHHHHHHHHHHHHH
Q 023302 122 VLSTGLGRIVPNLISRKHTNSAATVLYAFFGL 153 (284)
Q Consensus 122 ~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~ 153 (284)
.++..+|.++.+..+.++.-++.++.++...+
T Consensus 142 ~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~ 173 (365)
T TIGR00900 142 IVGPGIGGLMYATLGIKWAIWVDAVGFAISAL 173 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444444554555556655555555544433
No 59
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=58.27 E-value=53 Score=29.76 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=44.9
Q ss_pred cCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccC
Q 023302 227 KNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 227 ~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~ 282 (284)
++++.|.+|-.+|..+--..+..++.. ...+|++|+--.-|++=+.+|++.++.+
T Consensus 23 ~~~~~I~~GqylG~~~Lv~~Sl~~~~~-l~~ip~~wiLGlLGliPI~lGi~~l~~~ 77 (191)
T PF03596_consen 23 FRRRQIVIGQYLGFTILVLASLLGAFG-LLFIPPEWILGLLGLIPIYLGIKALFSG 77 (191)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 357899999999987776666665555 5599999999999999999999977654
No 60
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=55.57 E-value=1.8e+02 Score=31.81 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=34.3
Q ss_pred eeehHHHHHHHHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHHH
Q 023302 232 VAVGATIGHTICTSLAVVGGSMLASKIS------------QRTVATIGGLLFLCFSLSS 278 (284)
Q Consensus 232 V~~Ga~la~~l~t~laV~~G~~l~~~ip------------~~~i~~~agilFl~fGl~~ 278 (284)
.+.+..++.++.+.+++++-+++...+. .+.+..++|++|++.|+..
T Consensus 160 ~l~~~l~~~~~~~~i~~~~~y~~~~~~~~~~~~~~~~~~a~~hL~~L~~~~~l~~a~~y 218 (774)
T PF03699_consen 160 FLQSFLLALVVLSLIATLVVYYLFGGIRLQGRGPRFSRAARRHLSILLALFFLLKAVGY 218 (774)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888877777765443 4677888888888877653
No 61
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=54.18 E-value=1.9e+02 Score=27.00 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHH
Q 023302 243 CTSLAVVGGSMLASKISQRTVATIGGL 269 (284)
Q Consensus 243 ~t~laV~~G~~l~~~ip~~~i~~~agi 269 (284)
...++...+.++.+|++++..-.++.+
T Consensus 256 ~~~~g~~~~g~l~~r~g~~~~l~~~~~ 282 (390)
T TIGR02718 256 TVLLGCGGGAWLVRRAGLWRTFILGVG 282 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444556667777888887766554443
No 62
>COG0730 Predicted permeases [General function prediction only]
Probab=54.18 E-value=46 Score=30.17 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=45.4
Q ss_pred CCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccC
Q 023302 228 NAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 228 ~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~ 282 (284)
+...+-.-...-+.....++..+|.++..++|++.++..-+++.+..++++++.+
T Consensus 67 k~~~v~~~~~~~l~~~~~~G~~lG~~l~~~~~~~~l~~~~~~~ll~~~~~~~~~~ 121 (258)
T COG0730 67 KRGNVDWKLALILLLGALIGAFLGALLALLLPAELLKLLFGLLLLLLALYMLLGP 121 (258)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444666666677777789999999999999999999999999999999887653
No 63
>PRK10621 hypothetical protein; Provisional
Probab=53.19 E-value=46 Score=30.62 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=38.9
Q ss_pred ehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhc
Q 023302 234 VGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYF 280 (284)
Q Consensus 234 ~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~ 280 (284)
.-...-+.+...+++..|.++.+++|+++++.+-+++.+..++++++
T Consensus 77 ~~~~~~l~~~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~ 123 (266)
T PRK10621 77 LADQKLNIAMTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLL 123 (266)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567778899999999999999999999999888888887754
No 64
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=52.43 E-value=78 Score=32.69 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHhhh-cChHHHHHHHHhcccCCcEeeehHH----HHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 023302 198 PIFLESFILTFLAEW-GDRSQIATIALATHKNAVGVAVGAT----IGHTICTSLAVVGGSMLASKISQRTVATIGGLLFL 272 (284)
Q Consensus 198 ~~fl~aF~liFLAE~-GDKTQLati~LAa~~~~~~V~~Ga~----la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl 272 (284)
..+++.+...|.++- ++-+|..++.+-.-.+--.|+-+.. .|.+.+........-.+.+..+.+.+.....+.|.
T Consensus 266 vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~ 345 (488)
T KOG2325|consen 266 VCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFL 345 (488)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHH
Confidence 456777888888877 9999999988866433333333322 23333333333333334444566666666677777
Q ss_pred HHHHHHhcc
Q 023302 273 CFSLSSYFY 281 (284)
Q Consensus 273 ~fGl~~L~~ 281 (284)
.+-+.++.+
T Consensus 346 ~~~i~~yp~ 354 (488)
T KOG2325|consen 346 SYYIFTYPW 354 (488)
T ss_pred hhheeeeec
Confidence 776655443
No 65
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=52.33 E-value=1e+02 Score=24.76 Aligned_cols=53 Identities=21% Similarity=0.124 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcc--ccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 023302 110 LSGALSALFVMTVLSTGLGRIVPN--LISRKHTNSAATVLYAFFGLRLLYIAWMS 162 (284)
Q Consensus 110 f~Ga~~Al~l~t~LaV~~G~~l~~--~ip~~~~~~iagvlFl~FG~~~L~~a~~~ 162 (284)
.++...++...-.+.+.+..++.. .+|+.+--.+.+.+|++.+...++.+++.
T Consensus 42 ~~a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~liv~~~~l~la~i~~~~~~~~ 96 (121)
T PF07332_consen 42 VLAAVLALLALLFLLVALVFALWEALGLPPWLAFLIVAGLYLLLALILLLIGRRR 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555566666666633 34777777788888888888777766554
No 66
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=51.55 E-value=1e+02 Score=29.59 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=45.9
Q ss_pred HHHHhhcccHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhcccc--chhHHH---HHHHHHHHHHHHHHHH
Q 023302 83 MIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLI--SRKHTN---SAATVLYAFFGLRLLY 157 (284)
Q Consensus 83 lIflAElGDKTql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~i--p~~~~~---~iagvlFl~FG~~~L~ 157 (284)
+.+..-+|+=+.=+...+++- +|..+.+.....+.+.-.+...++. ..++.+ ++++++=+.+|+++.|
T Consensus 199 LL~a~~lg~~~~Gi~~vlafs-------lGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~ 271 (279)
T PRK10019 199 LLICIQLKALTLGATLVLSFS-------IGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGV 271 (279)
T ss_pred HHHHHHhchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544 4666666666666544444444443 445555 8999999999999999
Q ss_pred HHHh
Q 023302 158 IAWM 161 (284)
Q Consensus 158 ~a~~ 161 (284)
+.|.
T Consensus 272 ~~~~ 275 (279)
T PRK10019 272 HGFM 275 (279)
T ss_pred HHHH
Confidence 8775
No 67
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=50.26 E-value=59 Score=28.21 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHH
Q 023302 142 SAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVE 176 (284)
Q Consensus 142 ~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve 176 (284)
.+++.+.+..|.+.-+.+.|.++..+ |.|+.|++
T Consensus 42 ~ls~~l~~mig~yl~~~~rr~~~rPE-D~~daEI~ 75 (137)
T PF12270_consen 42 VLSGGLALMIGFYLRFTARRIGPRPE-DREDAEIA 75 (137)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCc-cccccccc
Confidence 35566677778777777777754442 23344443
No 68
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=49.33 E-value=64 Score=28.37 Aligned_cols=47 Identities=19% Similarity=0.096 Sum_probs=38.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHH
Q 023302 108 TVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLR 154 (284)
Q Consensus 108 ~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~ 154 (284)
+-.+.....+...+.+...+|+.+.+++|+++.+.+..++.+..|+.
T Consensus 193 ~~~~~~~~~~~~~~~~G~~lG~~~~~~i~~~~~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 193 WPMLLLSLILLPGAFLGAFLGAKLARKIPQKVFRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34555666678889999999999999999999999988888777765
No 69
>COG1971 Predicted membrane protein [Function unknown]
Probab=49.16 E-value=40 Score=30.73 Aligned_cols=43 Identities=14% Similarity=0.314 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHH
Q 023302 116 ALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIA 159 (284)
Q Consensus 116 Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a 159 (284)
....++.+...+|+.+..+++ +|...++|++.+.+|.+.|++-
T Consensus 145 ~T~il~~~G~~IG~~~g~~~g-~~ae~lgGiiLI~~G~~iL~~~ 187 (190)
T COG1971 145 ITLILSALGAIIGRKLGKFLG-KYAEILGGIILIGIGVKILLEH 187 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777777766654 7789999999999999999854
No 70
>PRK01637 hypothetical protein; Reviewed
Probab=47.14 E-value=58 Score=30.45 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=25.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhccc
Q 023302 106 KSTVLSGALSALFVMTVLSTGLGRIVPNL 134 (284)
Q Consensus 106 ~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ 134 (284)
.+.++.|+..+.+++.++...++.++.+.
T Consensus 201 ~r~~~~Ga~~a~~~w~~~~~~f~~Yv~~~ 229 (286)
T PRK01637 201 FRHALVGALVAALLFELGKKGFALYITTF 229 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34599999999999999999999998764
No 71
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=46.92 E-value=3.7e+02 Score=28.30 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChH
Q 023302 137 RKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRS 216 (284)
Q Consensus 137 ~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKT 216 (284)
..+++..+++..+.||..++.++.+.--. +..+.-+...+.+ +.-.++..++++-+----+-|
T Consensus 5 ~~~l~l~g~v~l~L~g~~~m~~Gv~~~~G-------~~lr~~L~~~t~n----------p~~gvl~Gi~~T~llQSStat 67 (533)
T COG1283 5 LVLLNLLGAVALLLFGIKMVGDGVQRAAG-------DRLRKILARFTSN----------PILGVLAGIVATALLQSSTAT 67 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHhcCC----------cHHHHHHHHHHHHHHHhcchH
Confidence 35788999999999999999988764211 1112112111111 113467778888888888889
Q ss_pred HHHHHHHhccc-----CCcEeeehHHHHHHHHHHHHHH
Q 023302 217 QIATIALATHK-----NAVGVAVGATIGHTICTSLAVV 249 (284)
Q Consensus 217 QLati~LAa~~-----~~~~V~~Ga~la~~l~t~laV~ 249 (284)
-+.|+++.+.. ...+|+.|+-+|..+.+-+..+
T Consensus 68 t~lt~gfV~aGl~sl~~Ai~vilGANIGTt~Ta~iva~ 105 (533)
T COG1283 68 TVLTIGFVAAGLLSLKQAIGVILGANIGTTVTAWIVAL 105 (533)
T ss_pred HHHHHHHHhccccchhhhhhheeccchhHHHHHHHHHH
Confidence 99999997652 4688999999998877766544
No 72
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=45.72 E-value=1.2e+02 Score=28.44 Aligned_cols=77 Identities=16% Similarity=0.210 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHhccCCCcc----hhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 023302 74 FDAFIASFSMIIVSEIGDETFIIAALMAMRHPKST----VLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYA 149 (284)
Q Consensus 74 ~~~f~~sF~lIflAElGDKTql~a~~LAar~~~~~----Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl 149 (284)
.+=+...+..++++ ++++.++.++++.. ++.|...+++........-.-.-...+|+-+.-++.-++|+
T Consensus 273 ~~R~~~p~~~l~~~-------lla~~l~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~l~p~~a~w~p~ii~~ 345 (354)
T PF03739_consen 273 HKRIALPLSCLILV-------LLALPLGIRFPRSGRISSLFIALLLGFLYYILFSFFSSLGENGNLPPFIAAWLPNIIFL 345 (354)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 33444455554444 56677888875532 45555555553333333222223357899999999999999
Q ss_pred HHHHHHHH
Q 023302 150 FFGLRLLY 157 (284)
Q Consensus 150 ~FG~~~L~ 157 (284)
++|+++++
T Consensus 346 ~~~~~l~~ 353 (354)
T PF03739_consen 346 ILGLYLLR 353 (354)
T ss_pred HHHHHHHh
Confidence 99999875
No 73
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=45.52 E-value=2.6e+02 Score=26.11 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHhh-----------hcChHHHH---------HHHHhcccCCcEeeehHHHHHHHHHHHHHHHHHHhhhc
Q 023302 198 PIFLESFILTFLAE-----------WGDRSQIA---------TIALATHKNAVGVAVGATIGHTICTSLAVVGGSMLASK 257 (284)
Q Consensus 198 ~~fl~aF~liFLAE-----------~GDKTQLa---------ti~LAa~~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ 257 (284)
+.|.++.+++-+.- -||-|.+. ++.+|+.+.+-..+ -+.- .++--+.=.+++++++..
T Consensus 100 ~gFvtasllfCvG~m~I~Gsi~~Gl~gd~siL~~KsiLDg~taiifaaslG~gV~~-saip-v~iyQg~l~llA~~l~~~ 177 (226)
T PF04474_consen 100 EGFVTASLLFCVGAMAILGSIQDGLTGDPSILLTKSILDGFTAIIFAASLGIGVAF-SAIP-VFIYQGSLTLLAGFLAPL 177 (226)
T ss_pred HHHHHHHHHHHcchhHHHhHHHhHhcCChHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHH-HHHHHHHHHHHHHHHHhh
Confidence 45666655544433 38988875 45666655432222 2222 223333334667788888
Q ss_pred CCHHHH---HHHHHHHHHHHHHHHhcc
Q 023302 258 ISQRTV---ATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 258 ip~~~i---~~~agilFl~fGl~~L~~ 281 (284)
+++..+ +.++|++-++.|+-.+..
T Consensus 178 ls~~~i~~~savGGili~~iGlnll~i 204 (226)
T PF04474_consen 178 LSPAMINEISAVGGILILAIGLNLLGI 204 (226)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888776 567788888888876543
No 74
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=44.91 E-value=25 Score=26.63 Aligned_cols=38 Identities=37% Similarity=0.356 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHhhhhchhccccCCCCCchhhhhcccc
Q 023302 11 LFVALSIFSALSAISAQDVLFESDNEDPSRSAKDLGRRG 49 (284)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (284)
++++..++...++.++.-..+. +++++++-.+.+|||=
T Consensus 4 ~iv~lll~ii~sL~saL~~l~k-d~~~~~rm~~~L~~RV 41 (63)
T PF11137_consen 4 LIVLLLLAIIASLFSALFFLVK-DKGSSKRMVKALGRRV 41 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCCCchHHHHHHHHH
Confidence 3444445566677777666665 5568888899999984
No 75
>PRK09304 arginine exporter protein; Provisional
Probab=43.60 E-value=76 Score=28.09 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhhcccc--c--hhHHHHHHHHHHHHHHHHHHHHHH
Q 023302 118 FVMTVLSTGLGRIVPNLI--S--RKHTNSAATVLYAFFGLRLLYIAW 160 (284)
Q Consensus 118 ~l~t~LaV~~G~~l~~~i--p--~~~~~~iagvlFl~FG~~~L~~a~ 160 (284)
..+...-+.+|+.+.+++ | .++++++.|++++.+|+++++++.
T Consensus 157 ~~~~~~~a~~~~~~~~~~~~~~~~~~in~~~g~~l~~~~~~l~~~~~ 203 (207)
T PRK09304 157 FLWFFGLALLAAWLAPRLRTAKAQRIINLFVGCVMWFIALQLARQGI 203 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333334444454444433 2 357789999999999999998654
No 76
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=43.53 E-value=3.1e+02 Score=26.49 Aligned_cols=94 Identities=14% Similarity=0.259 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHH
Q 023302 138 KHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQ 217 (284)
Q Consensus 138 ~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQ 217 (284)
..++.++|+..+++|+.++.++.+.-.. +..++-+..-++ + + ...++..+.+..+------|=
T Consensus 3 ~~~~llgGlgl~l~Gl~~~~~~l~~~~g-------~~~~~~l~~~t~-~---~------~~a~l~G~~~Tal~QSSsa~t 65 (307)
T TIGR00704 3 TLLHLLSAVAFLLWGMHIVRTGVMRVFG-------ARLRTVLSRSTE-K---K------PLAFLAGIGVTAIVQSSNATT 65 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHcC-C---c------HHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999887663211 112211111111 1 1 123455555566655555666
Q ss_pred HHHHHHhccc-----CCcEeeehHHHHHHHHHHHHH
Q 023302 218 IATIALATHK-----NAVGVAVGATIGHTICTSLAV 248 (284)
Q Consensus 218 Lati~LAa~~-----~~~~V~~Ga~la~~l~t~laV 248 (284)
..++.++... ....+..|+-+|..+...+..
T Consensus 66 ~i~i~lv~~G~l~~~~al~iilGANiGTt~t~~l~s 101 (307)
T TIGR00704 66 VLVISFVAAGVLSLAPAIVIILGANVGTTLTARILA 101 (307)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6777776542 356788888887766655543
No 77
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=42.70 E-value=2e+02 Score=28.26 Aligned_cols=47 Identities=15% Similarity=-0.012 Sum_probs=28.6
Q ss_pred ehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhc
Q 023302 234 VGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYF 280 (284)
Q Consensus 234 ~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~ 280 (284)
+++.-+.+...+.+-..++.+++.+|+...-.....-.+...++|+.
T Consensus 170 LAaLG~vF~~AGVG~vIa~lv~~viP~g~~~~~ViaYclGMalFTmI 216 (308)
T PF06166_consen 170 LAALGAVFTAAGVGDVIASLVSSVIPEGNRFIGVIAYCLGMALFTMI 216 (308)
T ss_pred HHHHHHHHHhcCccHHHHHHHHhhcCCCCeehhHHHHHHHHHHHHHH
Confidence 34444445555566667777888888876655555555555555544
No 78
>TIGR00846 caca2 calcium/proton exchanger. This model is generated from the calcium ion/proton exchangers of the CacA family.
Probab=40.43 E-value=3.7e+02 Score=26.37 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023302 139 HTNSAATVLYAFFGLRLLYIA 159 (284)
Q Consensus 139 ~~~~iagvlFl~FG~~~L~~a 159 (284)
..+..+.++.+.+++++.|+-
T Consensus 169 ls~~~giill~ly~~yl~~~~ 189 (365)
T TIGR00846 169 LSRGIAIVMLILYGAFLVFQL 189 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445667777788888887653
No 79
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=40.28 E-value=2.8e+02 Score=26.24 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=39.8
Q ss_pred HHHHHHhccCCCc-----chhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 023302 95 IIAALMAMRHPKS-----TVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 95 l~a~~LAar~~~~-----~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
++++.++.+.+|. .+.+|...+++......+.----....+|+....|+--++|+.+|+++++
T Consensus 286 lla~~~~~~~~R~~~~~~~i~~~i~~~~~y~~~~~~~~~lg~~g~l~P~laaw~P~iif~~~~~~ll~ 353 (356)
T PRK15071 286 LMALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLSLVYGIPPIIGALLPSLLFLGISLYLLR 353 (356)
T ss_pred HHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHh
Confidence 5666776665332 14555555554433333322222456789988899999999999999886
No 80
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=39.02 E-value=2.9e+02 Score=25.53 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=56.5
Q ss_pred HHHHhhhcChHHHHHHHHhcc---cCCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccC
Q 023302 206 LTFLAEWGDRSQIATIALATH---KNAVGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 206 liFLAE~GDKTQLati~LAa~---~~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~ 282 (284)
..|.|-==|--=+..+.+|.+ ++.+.+.+|-.+|...- .++.+.+.+..+.+|++|+--.-|++=+..|++-++.+
T Consensus 10 vly~aTaiD~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~l-ilaSL~~a~v~~fvp~e~I~glLGLIPi~LGik~l~~~ 88 (205)
T COG4300 10 VLYIATAIDLLIILLLFFARRKSRKDILHIYLGQYLGSVIL-ILASLLFAFVLNFVPEEWILGLLGLIPIYLGIKVLILG 88 (205)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHH-HHHHHHHHHHHhhCcHHHHHHHHhHHHHHHhhHHhhcc
Confidence 344454445555666667754 46789999999986554 44555667788999999999999999999999987653
No 81
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=36.71 E-value=4.4e+02 Score=26.51 Aligned_cols=52 Identities=25% Similarity=0.252 Sum_probs=37.4
Q ss_pred HHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHH
Q 023302 95 IIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATV 146 (284)
Q Consensus 95 l~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagv 146 (284)
...+.++.|++|+.++++...-+++-|.++.+...+-.-.+.|-..-...|+
T Consensus 66 p~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~ 117 (394)
T COG2814 66 PLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGV 117 (394)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888888888877766555555554444444
No 82
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=36.58 E-value=58 Score=25.89 Aligned_cols=30 Identities=20% Similarity=0.280 Sum_probs=23.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 023302 133 NLISRKHTNSAATVLYAFFGLRLLYIAWMS 162 (284)
Q Consensus 133 ~~ip~~~~~~iagvlFl~FG~~~L~~a~~~ 162 (284)
+.+|++.-..+.-++|++|++..+|..++.
T Consensus 20 ~~Lsp~~R~~vvl~ml~~fa~l~ly~~~~a 49 (85)
T PF13150_consen 20 GRLSPKQRLRVVLVMLVLFAALCLYMTVSA 49 (85)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888999998888875443
No 83
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=35.55 E-value=4e+02 Score=25.37 Aligned_cols=85 Identities=24% Similarity=0.260 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHHHHhhcccHHHHHHHHHhccCC--CcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q 023302 72 GVFDAFIASFSMIIVSEIGDETFIIAALMAMRHP--KSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYA 149 (284)
Q Consensus 72 ~~~~~f~~sF~lIflAElGDKTql~a~~LAar~~--~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl 149 (284)
+.+..+..+|..+ +=| |=.|=+.-..+.+.-+ ...+..|+..+.++..+++.++-+... .+|.+..-.+.+++-+
T Consensus 131 ~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~~~~-~i~~~~~f~~~~~~ll 207 (306)
T PF03239_consen 131 SKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYRGLI-RISLRSFFIITGVLLL 207 (306)
T ss_pred hhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHH
Confidence 4566677777433 333 5566666666655555 466888999998888888888766554 4677777777777666
Q ss_pred HHHHHHHHHH
Q 023302 150 FFGLRLLYIA 159 (284)
Q Consensus 150 ~FG~~~L~~a 159 (284)
+.+.-+++.+
T Consensus 208 ~~aa~L~~~~ 217 (306)
T PF03239_consen 208 LIAAGLLGVG 217 (306)
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 84
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=34.82 E-value=1.4e+02 Score=30.47 Aligned_cols=30 Identities=20% Similarity=0.437 Sum_probs=18.3
Q ss_pred cEeeehHHHHHHHHHHH-HHHHHHHhhhcCC
Q 023302 230 VGVAVGATIGHTICTSL-AVVGGSMLASKIS 259 (284)
Q Consensus 230 ~~V~~Ga~la~~l~t~l-aV~~G~~l~~~ip 259 (284)
..|.+|..+...+-..+ .|+.|..++....
T Consensus 357 lgVaigsalQI~Lf~vP~~v~v~W~~g~~M~ 387 (441)
T KOG1397|consen 357 LGVAIGSALQIALFVVPFSVIVGWIMGISMD 387 (441)
T ss_pred hhhhhhhhHhHHHhhhhHHHHhhhhcCCceE
Confidence 55666776665554443 6677777766553
No 85
>PRK00259 intracellular septation protein A; Reviewed
Probab=34.51 E-value=1.1e+02 Score=27.26 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=36.4
Q ss_pred eehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302 233 AVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 233 ~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~ 281 (284)
+..++.+.++.+.+++....+..+++|.. ++++.++-++||..+++.
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~~~~v~~m--~~i~~~lv~vfGglTl~l 68 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIRYRKVEKM--QLISLVVVVVFGGLTLVF 68 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcchh--HHHHHHHHHHHHHHHHHh
Confidence 44566777888888888888888877654 788888888888888753
No 86
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=33.82 E-value=4e+02 Score=24.88 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=59.6
Q ss_pred CCCchHHHHHHHHHHHHHhhc-----------ccHHHH---------HHHHHhccCCCcchhHHHHHHHHHHHHHHHHHh
Q 023302 69 SGLGVFDAFIASFSMIIVSEI-----------GDETFI---------IAALMAMRHPKSTVLSGALSALFVMTVLSTGLG 128 (284)
Q Consensus 69 ~~~~~~~~f~~sF~lIflAEl-----------GDKTql---------~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G 128 (284)
++.++.++|.++..+.-+.-+ ||-|.+ +++.+|+.|+.-..| .+.--++....+. +++
T Consensus 94 ~~~~f~~gFvtasllfCvG~m~I~Gsi~~Gl~gd~siL~~KsiLDg~taiifaaslG~gV~~-saipv~iyQg~l~-llA 171 (226)
T PF04474_consen 94 GDSSFAEGFVTASLLFCVGAMAILGSIQDGLTGDPSILLTKSILDGFTAIIFAASLGIGVAF-SAIPVFIYQGSLT-LLA 171 (226)
T ss_pred CcccHHHHHHHHHHHHHcchhHHHhHHHhHhcCChHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHHH-HHH
Confidence 356788999888776554433 787764 678999999876555 3444455555555 455
Q ss_pred hhhccccchhHH---HHHHHHHHHHHHHHHH
Q 023302 129 RIVPNLISRKHT---NSAATVLYAFFGLRLL 156 (284)
Q Consensus 129 ~~l~~~ip~~~~---~~iagvlFl~FG~~~L 156 (284)
+++..++++..+ ..++|++-+..|+.++
T Consensus 172 ~~l~~~ls~~~i~~~savGGili~~iGlnll 202 (226)
T PF04474_consen 172 GFLAPLLSPAMINEISAVGGILILAIGLNLL 202 (226)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677777775 4577888888888887
No 87
>PRK10995 inner membrane protein; Provisional
Probab=33.22 E-value=1.4e+02 Score=27.11 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhcC--CHHHHHHHHHHHHHHHHHHHhccCC
Q 023302 246 LAVVGGSMLASKI--SQRTVATIGGLLFLCFSLSSYFYPP 283 (284)
Q Consensus 246 laV~~G~~l~~~i--p~~~i~~~agilFl~fGl~~L~~~~ 283 (284)
+..+.|+.+.+.+ +....++.+|++.+.+|+.+++..|
T Consensus 57 ~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~~ 96 (221)
T PRK10995 57 VAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQQ 96 (221)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555666666554 7889999999999999999987653
No 88
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=33.09 E-value=2.1e+02 Score=27.41 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=41.5
Q ss_pred HHHHHhccCCCcc----hhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 023302 96 IAALMAMRHPKST----VLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 96 ~a~~LAar~~~~~----Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
+++.|+.+.+|.. ++.|..++++-.....+.-.-.....+|+..--|.--++|++.|+++++
T Consensus 282 lavpl~~~~~R~g~~~~i~~~i~~~~~y~~l~~~~~~l~~~g~lpp~la~Wlp~i~~~~~~~~l~~ 347 (366)
T PRK15120 282 MVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGGKGKLDPMIWMWAVNLIYLALAIVLNL 347 (366)
T ss_pred HHhhhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 4677777765532 5555555555444444433333456889988889889999999999985
No 89
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=32.72 E-value=88 Score=26.34 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccc----chhHHHHHHHH
Q 023302 111 SGALSALFVMTVLSTGLGRIVPNLI----SRKHTNSAATV 146 (284)
Q Consensus 111 ~Ga~~Al~l~t~LaV~~G~~l~~~i----p~~~~~~iagv 146 (284)
.+...+.++++.+..++|.++|+.+ |.++....+..
T Consensus 86 ~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~ 125 (183)
T PF01595_consen 86 WALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPL 125 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6778888888999999998877655 55555554433
No 90
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=32.29 E-value=3.3e+02 Score=24.86 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=22.0
Q ss_pred hccCCCcchhHHHHHHHHHHHHHHHHHhhhh
Q 023302 101 AMRHPKSTVLSGALSALFVMTVLSTGLGRIV 131 (284)
Q Consensus 101 Aar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l 131 (284)
.+..+++..+. ......+++-+++++|.++
T Consensus 224 ~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~ 253 (317)
T PF02535_consen 224 KAGFSKRKALL-LLLLFSLSTPIGALIGIAI 253 (317)
T ss_pred hhccccchhhH-HHHHHHHHHHHHHHHHHHh
Confidence 34445555554 7778888999999999988
No 91
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=32.04 E-value=96 Score=26.46 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=41.8
Q ss_pred CCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHHHHHhcc
Q 023302 228 NAVGVAVGATIGHTICTSLAVVGGSMLASKISQ--RTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 228 ~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~--~~i~~~agilFl~fGl~~L~~ 281 (284)
+.+.+.+|..+|..+...++++.-..+-+..|. ..++++++...+.+|..+++.
T Consensus 20 ~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 20 AGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567888999999988888888877777777773 667777777777799877663
No 92
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=31.69 E-value=1.1e+02 Score=25.15 Aligned_cols=25 Identities=24% Similarity=0.108 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCHHH
Q 023302 238 IGHTICTSLAVVGGSMLASKISQRT 262 (284)
Q Consensus 238 la~~l~t~laV~~G~~l~~~ip~~~ 262 (284)
..+++.+.+++.+|.|+-++.|.+.
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 3456778889999999999998654
No 93
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=31.48 E-value=1.2e+02 Score=26.64 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 023302 136 SRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 136 p~~~~~~iagvlFl~FG~~~L~ 157 (284)
.+++++++.|.+|+.+|+++.|
T Consensus 174 ~~~~i~~~~g~~l~~~a~~l~~ 195 (195)
T PRK10323 174 YGRQLNIVLALLLVYCAVRIFY 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3467899999999999998764
No 94
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=31.45 E-value=99 Score=32.11 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=26.1
Q ss_pred ehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHh
Q 023302 234 VGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSY 279 (284)
Q Consensus 234 ~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L 279 (284)
+|.++.+.+...++..+|..+...+...++..+.+++|+++|+.++
T Consensus 217 lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 217 QGMALTYTLLGLVVAAAGLQFQAALQHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444445555554444445667777777777777653
No 95
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=30.96 E-value=1.4e+02 Score=26.46 Aligned_cols=58 Identities=19% Similarity=0.359 Sum_probs=44.5
Q ss_pred HHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 023302 95 IIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 95 l~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
+++..++ .+.+.++.|...+...+-..+-.+.+++.++ .++++.++.+-...|+.++.
T Consensus 125 ~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l~~~---p~l~~~~~~~L~~ig~~li~ 182 (183)
T PF03741_consen 125 LAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLLERF---PYLKYLAAAILGFIGVKLIL 182 (183)
T ss_pred HHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Confidence 3444444 5667799999999999999999999988775 45677777777788888764
No 96
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=30.88 E-value=2.2e+02 Score=26.20 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=45.1
Q ss_pred cCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 023302 103 RHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWM 161 (284)
Q Consensus 103 r~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~ 161 (284)
..+.+.++.|...+...+-..+-.+.+++.++ .++++.++..-...|+.++.++..
T Consensus 121 t~~~~ii~~g~~~sIl~lr~~s~~l~~li~r~---p~L~~~~~~iL~~ig~kLil~~~~ 176 (215)
T TIGR03716 121 SGQFWVVFLGGIIGILIMRFAATIFVKLLERF---PELETAAFLLIGWIGVKLLLETLA 176 (215)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667799999999999999999998888765 456777777788899999987643
No 97
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=30.29 E-value=5.1e+02 Score=25.04 Aligned_cols=122 Identities=17% Similarity=0.220 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChH
Q 023302 137 RKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRS 216 (284)
Q Consensus 137 ~~~~~~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKT 216 (284)
+.+-+.+.|..++++|+.++.++.+.-.+ ++...+.-+..+ .+ . .-.++..++++.+---=--+
T Consensus 127 ~~~G~~l~G~gllf~gl~~m~~~~~pl~~---~~~~~~~~~~l~----~~---~------~~~~l~G~~lT~ivQSSsA~ 190 (307)
T TIGR00704 127 GQLGRSGIGLGLIFLALELISQLVTPLTQ---ANGVQVIFASLT----GS---I------LLDLLIGAVLTIISHSSSAA 190 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ChhHHHHHHHhc----cC---c------HHHHHHHHHHHHHHHHHHHH
Confidence 34445677788888888888776543211 111222221111 00 0 11234444444444333333
Q ss_pred HHHHHHHhccc-----CCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHH--HHHHHHHHHHHH
Q 023302 217 QIATIALATHK-----NAVGVAVGATIGHTICTSLAVVGGSMLASKISQRT--VATIGGLLFLCF 274 (284)
Q Consensus 217 QLati~LAa~~-----~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~--i~~~agilFl~f 274 (284)
=..+++|+... ...++.+|+-+|..+...++...++.-++|+.--+ .+.++.++|+.+
T Consensus 191 i~i~~~la~~G~i~~~~a~~lvlGaNiGT~~ta~las~g~~~~arr~Alahllfn~~g~ll~lp~ 255 (307)
T TIGR00704 191 VLITATLTAAGIIGFPVALCLVLGSNLGSGILAMLAASAANAAARRVALGHVLFNVVGSLIILPF 255 (307)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHhcchhHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555542 35678889999988888888877777677665433 355666666543
No 98
>COG0795 Predicted permeases [General function prediction only]
Probab=28.99 E-value=2.6e+02 Score=26.65 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=43.7
Q ss_pred HHHHHHhccCCCc---c--hhHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 023302 95 IIAALMAMRHPKS---T--VLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 95 l~a~~LAar~~~~---~--Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
++++.++.+++|. . ++.|...+++................+|+...-+.--++|+..|+|.++
T Consensus 292 lla~~l~~~~~R~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~p~~a~~~p~~i~l~~~~~l~~ 359 (364)
T COG0795 292 LLALPLSLRNPRSGRLGLRLLGGILLGLLFYVLLFLLGALALAGKLPPFLAAWLPNLVFLALGLWLLR 359 (364)
T ss_pred HHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788887651 2 3444444455555544444445667889999999999999999999986
No 99
>TIGR00948 2a75 L-lysine exporter.
Probab=28.39 E-value=1.4e+02 Score=25.43 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=39.0
Q ss_pred CCcEeeehHHHHHHHHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHHHhccC
Q 023302 228 NAVGVAVGATIGHTICTSLAVVGGSMLASKIS--QRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 228 ~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip--~~~i~~~agilFl~fGl~~L~~~ 282 (284)
+-....+|..+|..+-..++++.-..+.+..| ...+++++++-.+-+|..+++.+
T Consensus 21 ~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 21 HVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888887877777777776666 34566666666666888777654
No 100
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=28.23 E-value=4.9e+02 Score=26.85 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 023302 236 ATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCF 274 (284)
Q Consensus 236 a~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~f 274 (284)
+..+.-+.+.+..+.|-++-+|++.|.+...+..+-.++
T Consensus 310 an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 310 ANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 345566677777788888888888888877776554443
No 101
>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=27.89 E-value=5.8e+02 Score=25.65 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=27.2
Q ss_pred cChHHHHHHHHhcccC----CcEeeehHHHHHHHHHHHHHHH-HHHhhhcC
Q 023302 213 GDRSQIATIALATHKN----AVGVAVGATIGHTICTSLAVVG-GSMLASKI 258 (284)
Q Consensus 213 GDKTQLati~LAa~~~----~~~V~~Ga~la~~l~t~laV~~-G~~l~~~i 258 (284)
|.-+-.+|..-+++++ ..-+..|+.++.+.-+.+++.+ +-+.++.+
T Consensus 267 gn~~E~~tAi~aA~~~~mqls~nia~Gsalq~~lltiP~lvlis~~~gqpm 317 (368)
T COG0387 267 GNAPEHLTALRAALNNRMQLSMNIAMGSALQTALLTIPVLVLISLFTGQPL 317 (368)
T ss_pred ccCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4444444544444332 3567888888888888876654 44444433
No 102
>PF14007 YtpI: YtpI-like protein
Probab=27.25 E-value=1.9e+02 Score=23.24 Aligned_cols=27 Identities=11% Similarity=0.151 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhc
Q 023302 136 SRKHTNSAATVLYAFFGLRLLYIAWMS 162 (284)
Q Consensus 136 p~~~~~~iagvlFl~FG~~~L~~a~~~ 162 (284)
.+.++.++.+++|+++|+..++.++|.
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G~r~ 80 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAGIRA 80 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 678889999999999999999988775
No 103
>COG1238 Predicted membrane protein [Function unknown]
Probab=27.00 E-value=4.4e+02 Score=23.24 Aligned_cols=89 Identities=18% Similarity=0.307 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHHHhhcccHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhccccchhH-------HHHHH
Q 023302 72 GVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKH-------TNSAA 144 (284)
Q Consensus 72 ~~~~~f~~sF~lIflAElGDKTql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~-------~~~ia 144 (284)
+..-.|+.+|+-..+-=++..-.++.+.++- ++++...+=+..|..+-+...-.+|+...+.+.+++ .+...
T Consensus 18 a~~~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~~~~~~~~~~~~~~~~~~~~~ 96 (161)
T COG1238 18 AYAGLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFLPEFIARRWFPGSEEALEKLQ 96 (161)
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcchHHHHHHhhcchHHHHHHHH
Confidence 4456778888888888888888999999988 888887777788888888888888888877666532 23333
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023302 145 TVLYAFFGLRLLYIAWM 161 (284)
Q Consensus 145 gvlFl~FG~~~L~~a~~ 161 (284)
.-.|-=.|.|++.-+|-
T Consensus 97 ~~~~~ryg~~~ll~s~l 113 (161)
T COG1238 97 EKWYRRYGVWTLLLSWL 113 (161)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33455666666665543
No 104
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=26.49 E-value=6.2e+02 Score=24.80 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhhcCC
Q 023302 242 ICTSLAVVGGSMLASKIS 259 (284)
Q Consensus 242 l~t~laV~~G~~l~~~ip 259 (284)
+++.++.+++.++++++.
T Consensus 299 ~~~~ig~~~~G~lsDr~~ 316 (476)
T PLN00028 299 LMNLFARPAGGYLSDVAA 316 (476)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 444555555555555554
No 105
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=25.76 E-value=2.7e+02 Score=24.92 Aligned_cols=21 Identities=29% Similarity=0.590 Sum_probs=9.4
Q ss_pred hHHHHHhhhccCCCccccccc
Q 023302 172 MEEVEEKLESGQGKTTFRRFF 192 (284)
Q Consensus 172 ~eEve~~l~~~~~~~~~~~~~ 192 (284)
..|.++++|++.....+|++.
T Consensus 86 q~e~d~eieeg~kd~EFrPFI 106 (180)
T COG5249 86 QIEDDDEIEEGEKDNEFRPFI 106 (180)
T ss_pred hhccccccccccccchhhHHH
Confidence 333344455554444454433
No 106
>PRK13499 rhamnose-proton symporter; Provisional
Probab=25.42 E-value=1.9e+02 Score=28.52 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhcccHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHhhhhc--------c-ccchhHHHHHHHH
Q 023302 76 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVP--------N-LISRKHTNSAATV 146 (284)
Q Consensus 76 ~f~~sF~lIflAElGDKTql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~--------~-~ip~~~~~~iagv 146 (284)
.+..++..=.+--+|--+|+.++- .+|...++-+.+++..++|..++ + +=.+...-...|+
T Consensus 72 ~~~~~~l~G~~W~iG~i~~~~s~~----------~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv 141 (345)
T PRK13499 72 TLLPVFLFGALWGIGGITYGLTMR----------YLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGV 141 (345)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHH----------HhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHH
Confidence 344444444444555555554432 23455555555555555554442 1 1235555678888
Q ss_pred HHHHHHHHHHHHHHhcC
Q 023302 147 LYAFFGLRLLYIAWMSD 163 (284)
Q Consensus 147 lFl~FG~~~L~~a~~~~ 163 (284)
+-++.|+.+.-.|.+++
T Consensus 142 ~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 142 LVALIGVAIVGRAGQLK 158 (345)
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 88899988876555543
No 107
>TIGR00893 2A0114 d-galactonate transporter.
Probab=25.42 E-value=4.8e+02 Score=23.09 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhhcCCHH
Q 023302 243 CTSLAVVGGSMLASKISQR 261 (284)
Q Consensus 243 ~t~laV~~G~~l~~~ip~~ 261 (284)
+..++...+.++.+++..+
T Consensus 263 ~~~~~~~~~g~~~~~~~~~ 281 (399)
T TIGR00893 263 VGFIGMILGGRLSDLLLRR 281 (399)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3444445555555555444
No 108
>PRK10229 threonine efflux system; Provisional
Probab=25.14 E-value=3.3e+02 Score=23.75 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=50.2
Q ss_pred HHHHHHhhh--cChHHHHHHHHhccc---CCcEeeehHHHHHHHHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHH
Q 023302 204 FILTFLAEW--GDRSQIATIALATHK---NAVGVAVGATIGHTICTSLAVVGGSMLASKIS--QRTVATIGGLLFLCFSL 276 (284)
Q Consensus 204 F~liFLAE~--GDKTQLati~LAa~~---~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip--~~~i~~~agilFl~fGl 276 (284)
+...+++.+ |. ..+.++.-+.++ +......|...|..+...++++.-..+.+..| ...+++++++-.+-+|.
T Consensus 9 ~~~~~~~~~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~ 87 (206)
T PRK10229 9 AMVHIVALMSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGY 87 (206)
T ss_pred HHHHHHHhcCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444 54 455555566554 35667889999988888888887777777777 34566666655566887
Q ss_pred HHhcc
Q 023302 277 SSYFY 281 (284)
Q Consensus 277 ~~L~~ 281 (284)
.+++.
T Consensus 88 ~~~~~ 92 (206)
T PRK10229 88 QMLRG 92 (206)
T ss_pred HHHHh
Confidence 76654
No 109
>PRK10599 calcium/sodium:proton antiporter; Provisional
Probab=24.80 E-value=5.7e+02 Score=25.53 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=23.1
Q ss_pred CcEeeehHHHHHHHHHHHHH-HHHHHhhhcC
Q 023302 229 AVGVAVGATIGHTICTSLAV-VGGSMLASKI 258 (284)
Q Consensus 229 ~~~V~~Ga~la~~l~t~laV-~~G~~l~~~i 258 (284)
...+.+|+.++.+.-+.+++ ++|.++.+.+
T Consensus 287 slnialGSsLq~illtvP~lvlig~~~g~pm 317 (366)
T PRK10599 287 AMNLFFGSVLATISLTVPVVTLIAFLTGNEL 317 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 46788999999999999876 4566666654
No 110
>PRK09669 putative symporter YagG; Provisional
Probab=24.66 E-value=6.3e+02 Score=24.20 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH
Q 023302 242 ICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSL 276 (284)
Q Consensus 242 l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl 276 (284)
+...++..+..++.+|...+....++.+++.+.++
T Consensus 275 i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 275 IAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 33445555666778888777666655544443333
No 111
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=23.63 E-value=7.7e+02 Score=24.91 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 023302 110 LSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 110 f~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
.+|....++++-.+....+....+..+.+..-.++|+-+++|++-+.+
T Consensus 198 y~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~ 245 (477)
T PF11700_consen 198 YIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFL 245 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 467777777776666666665445667788888999999999998876
No 112
>PF03591 AzlC: AzlC protein; InterPro: IPR011606 Some proteins in this entry are encoded by a gene, which is a part of the azl operon. This operon is involved in branched-chain amino acid transport []. Overexpression of this gene results in resistance to a leucine analogue, 4-azaleucine. The protein has 5 potential transmembrane motifs.
Probab=23.36 E-value=1.8e+02 Score=24.68 Aligned_cols=47 Identities=32% Similarity=0.409 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHhccCCCc--chhHHHHHHHHHHHHHHHHHhhhhccccc
Q 023302 90 GDETFIIAALMAMRHPKS--TVLSGALSALFVMTVLSTGLGRIVPNLIS 136 (284)
Q Consensus 90 GDKTql~a~~LAar~~~~--~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip 136 (284)
-|.|+-+++.-..+.++. ..+.|......+.-.+++++|.++.+.||
T Consensus 95 tDe~fa~~~~~~~~~~~~~~~~~~g~~~~~~~~W~~gt~~G~~~G~~iP 143 (143)
T PF03591_consen 95 TDESFAVAMSRFQPNPPDRHAYYLGLGLLLYLSWVLGTALGALLGNLIP 143 (143)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc
Confidence 488888887766665543 37888888888888999999999888887
No 113
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.08 E-value=58 Score=26.33 Aligned_cols=6 Identities=50% Similarity=1.071 Sum_probs=2.5
Q ss_pred hhHHHH
Q 023302 10 FLFVAL 15 (284)
Q Consensus 10 ~~~~~~ 15 (284)
|+++.+
T Consensus 6 ~llL~l 11 (95)
T PF07172_consen 6 FLLLGL 11 (95)
T ss_pred HHHHHH
Confidence 444443
No 114
>PF14007 YtpI: YtpI-like protein
Probab=22.65 E-value=1.9e+02 Score=23.28 Aligned_cols=24 Identities=33% Similarity=0.384 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhccC
Q 023302 259 SQRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 259 p~~~i~~~agilFl~fGl~~L~~~ 282 (284)
.+.+++.+.|++|+++|+..++.+
T Consensus 54 ~~st~~~iV~~ifl~lG~~n~~~G 77 (89)
T PF14007_consen 54 FGSTVRLIVGAIFLVLGLFNLFAG 77 (89)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHH
Confidence 678889999999999999887653
No 115
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=22.60 E-value=1.8e+02 Score=23.33 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCcchhHHHHHhh
Q 023302 138 KHTNSAATVLYAFFGLRLLYI-AWMSDPKSGQKKEMEEVEEKL 179 (284)
Q Consensus 138 ~~~~~iagvlFl~FG~~~L~~-a~~~~~~~~~~~e~eEve~~l 179 (284)
..+.++=-.+-+.||.+.+.. +|+.-.=+|-+|+.+|..+|+
T Consensus 35 ~ii~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~~eL~~eI 77 (91)
T PF08285_consen 35 EIIPYLPFYALVSFGCYSLFTLGYGVATFNDCPEAAKELQKEI 77 (91)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 344444444556788887775 555421122333444444444
No 116
>PRK00259 intracellular septation protein A; Reviewed
Probab=22.54 E-value=2.5e+02 Score=25.05 Aligned_cols=45 Identities=24% Similarity=0.245 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 023302 111 SGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 111 ~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~ 157 (284)
..+..++++.+.+++....+..+.+|+. ++++.++-++||..+++
T Consensus 23 ~~AT~~~i~a~~~~~~~~~~~~~~v~~m--~~i~~~lv~vfGglTl~ 67 (179)
T PRK00259 23 YAATAALIVATVIQLAISWIRYRKVEKM--QLISLVVVVVFGGLTLV 67 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcchh--HHHHHHHHHHHHHHHHH
Confidence 3566777888888888888888877655 78888888899999986
No 117
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=22.51 E-value=4e+02 Score=25.21 Aligned_cols=46 Identities=9% Similarity=0.006 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccc---------cchhHHHHHHHHHHHHHHHHHH
Q 023302 110 LSGALSALFVMTVLSTGLGRIVPNL---------ISRKHTNSAATVLYAFFGLRLL 156 (284)
Q Consensus 110 f~Ga~~Al~l~t~LaV~~G~~l~~~---------ip~~~~~~iagvlFl~FG~~~L 156 (284)
.+|..+++.+++...++.|...+++ ....++++++.+ +.++|..+.
T Consensus 78 ~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~-l~~~~~~~f 132 (254)
T PF07857_consen 78 TIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVA-LVLVSGIIF 132 (254)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHH-HHHHHHHhe
Confidence 3788899999999999999776543 334555666544 445554443
No 118
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=22.46 E-value=6.4e+02 Score=23.52 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Q 023302 242 ICTSLAVVGGSMLASKISQRTVATIGGLLFL 272 (284)
Q Consensus 242 l~t~laV~~G~~l~~~ip~~~i~~~agilFl 272 (284)
++..+.-.....+.+|.+++.+-.++.+.+.
T Consensus 251 ~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~ 281 (382)
T TIGR00902 251 LAEIIIFAFSNKLFQNCSARDLLLISAIACV 281 (382)
T ss_pred HHHHHHHHHhHHHHhhCCHHHHHHHHHHHHH
Confidence 3334444555566778888877655555443
No 119
>PRK10847 hypothetical protein; Provisional
Probab=22.26 E-value=2.7e+02 Score=25.04 Aligned_cols=33 Identities=12% Similarity=0.007 Sum_probs=26.3
Q ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHhhhhccc
Q 023302 102 MRHPKSTVLSGALSALFVMTVLSTGLGRIVPNL 134 (284)
Q Consensus 102 ar~~~~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ 134 (284)
+|.+.+..++...++-++++.+-+.+|..+.+.
T Consensus 149 ~~m~~~~F~~~~~lg~~~W~~~~~~~Gy~~g~~ 181 (219)
T PRK10847 149 GHMSYRHFAAYNVIGALLWVLLFTYAGYFFGTL 181 (219)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 566777777788888888888888888887754
No 120
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=22.25 E-value=8.2e+02 Score=24.71 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=32.2
Q ss_pred ehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302 234 VGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 234 ~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~ 281 (284)
+|..+.++++-.+....+....+..+.|..-.++|+-+++|++-+++.
T Consensus 199 ~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~ 246 (477)
T PF11700_consen 199 IGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLW 246 (477)
T ss_pred HHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHh
Confidence 566666666665555555444455677888888888888888865544
No 121
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.13 E-value=2.2e+02 Score=27.87 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=43.2
Q ss_pred hHHHHHHHHhcccC-CcEeeehHHHHH--------HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhcc
Q 023302 215 RSQIATIALATHKN-AVGVAVGATIGH--------TICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFY 281 (284)
Q Consensus 215 KTQLati~LAa~~~-~~~V~~Ga~la~--------~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~ 281 (284)
|+-++|-..+.+-+ +..+.++...++ ++.-...|+-++.+.-..++.|+..++.++-+.+|+|++|.
T Consensus 76 Kaviasylia~~~~lk~~ilLsf~~sllqG~~Av~l~~~~~~v~~~~s~~~~~s~~~lE~~S~~Ll~~~G~w~~~r 151 (303)
T COG2215 76 KAVIATYLIAHKATLKRAILLSFLASLLQGLTAVVLLLAFLGVLRLSSITFALSEPWLELISFLLLILLGLWLLWR 151 (303)
T ss_pred hHHHHHHHHhcccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555432 233444333221 22223455566777778899999999999999999999874
No 122
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=21.98 E-value=1.5e+02 Score=22.05 Aligned_cols=24 Identities=13% Similarity=0.009 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 023302 138 KHTNSAATVLYAFFGLRLLYIAWM 161 (284)
Q Consensus 138 ~~~~~iagvlFl~FG~~~L~~a~~ 161 (284)
+++-.+.++.++.+|+|.++++++
T Consensus 47 ~~ll~~vg~gli~~gi~~~~~a~~ 70 (73)
T PF06724_consen 47 RWLLGAVGLGLIGYGIWQFVKAVY 70 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888899999999998875
No 123
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=21.31 E-value=5.6e+02 Score=22.98 Aligned_cols=72 Identities=8% Similarity=0.109 Sum_probs=48.8
Q ss_pred ccHHHHHHHHHhccCCC---cchhHHHHHHHHHHHHHHHHHhhhhccccchh---HHHHHHHHHHHHHHHHHHHHHHh
Q 023302 90 GDETFIIAALMAMRHPK---STVLSGALSALFVMTVLSTGLGRIVPNLISRK---HTNSAATVLYAFFGLRLLYIAWM 161 (284)
Q Consensus 90 GDKTql~a~~LAar~~~---~~Vf~Ga~~Al~l~t~LaV~~G~~l~~~ip~~---~~~~iagvlFl~FG~~~L~~a~~ 161 (284)
|.=|-=+.+.++++++. ....+++.....+.+.+.-..++++.+++.+. .+.++.|++-...|+.+..++.+
T Consensus 123 GPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~~g~~vi~Ri~Glil~aiavq~i~~Gl~ 200 (203)
T PF01914_consen 123 GPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKIMRRLGKTGLQVITRIMGLILAAIAVQMILSGLR 200 (203)
T ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455666666664 23455556666666777777777777777654 45678899999999999887765
No 124
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=21.07 E-value=2.6e+02 Score=24.91 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 023302 137 RKHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 137 ~~~~~~iagvlFl~FG~~~L~ 157 (284)
.++.+++.|++|+.+|+++++
T Consensus 185 ~~~~~~~~G~~li~~g~~l~~ 205 (208)
T COG1280 185 SRIINRLFGVLLIGFGVKLAL 205 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999999986
No 125
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=21.04 E-value=6.8e+02 Score=23.28 Aligned_cols=31 Identities=13% Similarity=-0.040 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHHHHHHH
Q 023302 120 MTVLSTGLGRIVPNLISRKHTNSAATVLYAF 150 (284)
Q Consensus 120 ~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~ 150 (284)
-..++..+|.++.+....+..-++.++.++.
T Consensus 140 g~~igp~lgg~l~~~~g~~~~f~~~~~~~~~ 170 (382)
T PRK11128 140 AFVIGSALTGKLVSWFGEQAILWILTAGVAS 170 (382)
T ss_pred HHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3445555555555555666665655554443
No 126
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=20.98 E-value=2e+02 Score=25.19 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=40.0
Q ss_pred CCcEeeehHHHHHHHHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHHHHHHHhccC
Q 023302 228 NAVGVAVGATIGHTICTSLAVVGGSMLASKISQ--RTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 228 ~~~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~--~~i~~~agilFl~fGl~~L~~~ 282 (284)
+.+...+|...|..+-..++++.-..+.+..|. ..++++++.-.+-+|+.+++..
T Consensus 38 ~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~~~~~s~ 94 (205)
T PRK10520 38 GAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGIQQWRAA 94 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 567788899999988888877776666665553 3556666666677898887754
No 127
>TIGR00901 2A0125 AmpG-related permease.
Probab=20.93 E-value=6.4e+02 Score=22.91 Aligned_cols=26 Identities=12% Similarity=0.140 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHH
Q 023302 244 TSLAVVGGSMLASKISQRTVATIGGL 269 (284)
Q Consensus 244 t~laV~~G~~l~~~ip~~~i~~~agi 269 (284)
..++.+++.++.+|++.+..-..+.+
T Consensus 258 ~~~g~~~~g~l~~r~g~~~~l~~~~~ 283 (356)
T TIGR00901 258 AILGGLIGGIIMQPLNILYALLLFGI 283 (356)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34566667777788876655444443
No 128
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=20.66 E-value=2.6e+02 Score=25.07 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=35.3
Q ss_pred ehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHhccC
Q 023302 234 VGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSSYFYP 282 (284)
Q Consensus 234 ~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~L~~~ 282 (284)
.=++.+.++++.+.+....+..+++| .++++++++=++||..|++..
T Consensus 23 ~~AT~~~~vat~~~~~~~~~~~~~v~--~m~~is~~lv~vFGglTl~~~ 69 (178)
T TIGR00997 23 FAATIALLVATIIAIGLSYVKYKKVE--KMQWISFVLIVVFGGLTLIFH 69 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHHHHHHHHHHHHHHHhC
Confidence 34556667888888888888888665 567788888888888887654
No 129
>PF11364 DUF3165: Protein of unknown function (DUF3165); InterPro: IPR021506 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.39 E-value=4.2e+02 Score=21.20 Aligned_cols=48 Identities=21% Similarity=0.110 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 023302 110 LSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDP 164 (284)
Q Consensus 110 f~Ga~~Al~l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~FG~~~L~~a~~~~~ 164 (284)
+.|...++++..+++.. -+-+. |++ +..++..++.|.+.++|-.++++
T Consensus 31 ~v~~~vlLivla~ls~~---ki~q~-P~E---ifv~~~Mi~l~y~alrDi~~l~~ 78 (81)
T PF11364_consen 31 LVGLVVLLIVLAVLSFI---KIFQL-PPE---IFVGLAMIVLGYFALRDISKLST 78 (81)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhC-CHH---HHHHHHHHHHHHHHHHHHHhCCc
Confidence 44555555555555544 22233 333 45667788999999988777654
No 130
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=20.13 E-value=2.2e+02 Score=25.38 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=37.7
Q ss_pred cEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHH
Q 023302 230 VGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLS 277 (284)
Q Consensus 230 ~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~ 277 (284)
+.-+.|..++..+.+..+...|+++.++.+.+ ..+..|......|++
T Consensus 133 ~~y~~G~~~at~~l~~~g~~~~~~~~~~~~~~-~~r~~G~~ia~~G~~ 179 (180)
T PF04955_consen 133 LLYAAGFVLATALLHAAGLALGRLLRRRWAAR-AVRAAGGAIAAAGLM 179 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHh
Confidence 44667888888888888999999988877777 777888888888865
No 131
>PRK10958 leucine export protein LeuE; Provisional
Probab=20.13 E-value=6.2e+02 Score=22.45 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 023302 138 KHTNSAATVLYAFFGLRLLY 157 (284)
Q Consensus 138 ~~~~~iagvlFl~FG~~~L~ 157 (284)
++++++.|++|+.+|++++.
T Consensus 190 ~~i~~~~g~~l~~~~i~l~~ 209 (212)
T PRK10958 190 AGGNSLVGLLFVGFAAKLAT 209 (212)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56899999999999998864
Done!