Query 023302
Match_columns 284
No_of_seqs 195 out of 1220
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 04:32:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 84.1 22 0.00075 31.4 14.4 31 241-271 305-335 (438)
2 1pw4_A Glycerol-3-phosphate tr 68.0 19 0.00067 31.8 8.3 40 241-280 298-339 (451)
3 4gc0_A D-xylose-proton symport 28.1 3.2E+02 0.011 24.3 10.7 186 93-278 71-359 (491)
4 2knc_A Integrin alpha-IIB; tra 24.5 97 0.0033 21.8 4.1 17 142-158 19-35 (54)
5 4aps_A DI-OR tripeptide H+ sym 17.4 5.3E+02 0.018 22.9 15.2 32 119-150 157-188 (491)
6 4av3_A K(+)-stimulated pyropho 15.2 2.6E+02 0.0089 29.1 6.6 29 235-264 88-116 (735)
7 2lx0_A Membrane fusion protein 15.2 2E+02 0.0067 17.9 3.5 15 143-157 13-27 (32)
8 2i68_A Protein EMRE; transmemb 12.8 1.5E+02 0.0051 24.0 3.3 16 142-157 87-102 (137)
9 2w2e_A AQY1, aquaporin, aquapo 7.7 2.8E+02 0.0095 25.0 3.4 16 246-261 113-128 (279)
10 3l1l_A Arginine/agmatine antip 7.7 1.1E+03 0.037 20.9 7.4 16 141-156 409-424 (445)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=84.10 E-value=22 Score=31.42 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 023302 241 TICTSLAVVGGSMLASKISQRTVATIGGLLF 271 (284)
Q Consensus 241 ~l~t~laV~~G~~l~~~ip~~~i~~~agilF 271 (284)
.++..++.+++.++.+|+..+.+-.++.++.
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3455567777778888898887766555444
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=68.05 E-value=19 Score=31.80 Aligned_cols=40 Identities=8% Similarity=0.100 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHHHHHhc
Q 023302 241 TICTSLAVVGGSMLASKI--SQRTVATIGGLLFLCFSLSSYF 280 (284)
Q Consensus 241 ~l~t~laV~~G~~l~~~i--p~~~i~~~agilFl~fGl~~L~ 280 (284)
.++..++..+..++.+|+ +.+.+..++.++....++..+.
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 339 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 345556666667778887 7777766666666555555443
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=28.13 E-value=3.2e+02 Score=24.30 Aligned_cols=186 Identities=14% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCcchhHHHHHHHHHHHHHHH------------------------------------------HHhhh
Q 023302 93 TFIIAALMAMRHPKSTVLSGALSALFVMTVLST------------------------------------------GLGRI 130 (284)
Q Consensus 93 Tql~a~~LAar~~~~~Vf~Ga~~Al~l~t~LaV------------------------------------------~~G~~ 130 (284)
.++..-.++-|++|+.++.-+..-..+.+++.. ..-.+
T Consensus 71 G~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~ 150 (491)
T 4gc0_A 71 GGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMY 150 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hccccchhHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Q 023302 131 VPNLISRKHTNSAATVLYAFFGLRLLYIAW-------------------------------------------------- 160 (284)
Q Consensus 131 l~~~ip~~~~~~iagvlFl~FG~~~L~~a~-------------------------------------------------- 160 (284)
+.+..|++......+........-.+.-.+
T Consensus 151 i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~ 230 (491)
T 4gc0_A 151 IAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSR 230 (491)
T ss_dssp HHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHT
T ss_pred HHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHc
Q ss_pred -----------hcCCCCCCcchhHHHHHhhhccCCCccccccccccchhhHHHHHHHHHHhhhcChHHHHHHHHhcccCC
Q 023302 161 -----------MSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNA 229 (284)
Q Consensus 161 -----------~~~~~~~~~~e~eEve~~l~~~~~~~~~~~~~~~~~~~~fl~aF~liFLAE~GDKTQLati~LAa~~~~ 229 (284)
+...++..++|.+|.++..+.............+...-............-..--+...+..+......
T Consensus 231 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4gc0_A 231 GKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS 310 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC
T ss_pred CchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC
Q ss_pred cEeeehHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHH
Q 023302 230 VGVAVGATIGHTICTSLAVVGGSMLASKISQRTVATIGGLLFLCFSLSS 278 (284)
Q Consensus 230 ~~V~~Ga~la~~l~t~laV~~G~~l~~~ip~~~i~~~agilFl~fGl~~ 278 (284)
............++..++.+++.++.+|+..|.....+.....+.-+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.49 E-value=97 Score=21.83 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023302 142 SAATVLYAFFGLRLLYI 158 (284)
Q Consensus 142 ~iagvlFl~FG~~~L~~ 158 (284)
.++|++.+..-...||.
T Consensus 19 vl~GLllL~li~~~LwK 35 (54)
T 2knc_A 19 VLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=17.39 E-value=5.3e+02 Score=22.87 Aligned_cols=32 Identities=6% Similarity=-0.091 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHHHHHHH
Q 023302 119 VMTVLSTGLGRIVPNLISRKHTNSAATVLYAF 150 (284)
Q Consensus 119 l~t~LaV~~G~~l~~~ip~~~~~~iagvlFl~ 150 (284)
+-..++-.++.++.+...-++.-++.++..++
T Consensus 157 ~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~ 188 (491)
T 4aps_A 157 LGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFI 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33445555555555555666665665554443
No 6
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=15.25 E-value=2.6e+02 Score=29.07 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcCCHHHHH
Q 023302 235 GATIGHTICTSLAVVGGSMLASKISQRTVA 264 (284)
Q Consensus 235 Ga~la~~l~t~laV~~G~~l~~~ip~~~i~ 264 (284)
+-.+| .+|+.++-++|-+++.+-+.|+-+
T Consensus 88 ~Fl~G-a~~S~~aGyiGM~vAt~ANvRTA~ 116 (735)
T 4av3_A 88 AFLLG-AVMSASAGIVGMKMATRANVRVAE 116 (735)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 467788888888887776665544
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=15.21 E-value=2e+02 Score=17.92 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHH
Q 023302 143 AATVLYAFFGLRLLY 157 (284)
Q Consensus 143 iagvlFl~FG~~~L~ 157 (284)
++-.-|+.||+|+..
T Consensus 13 valltflafgfwlfk 27 (32)
T 2lx0_A 13 VALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444569999999874
No 8
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=12.83 E-value=1.5e+02 Score=23.96 Aligned_cols=16 Identities=6% Similarity=0.196 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 023302 142 SAATVLYAFFGLRLLY 157 (284)
Q Consensus 142 ~iagvlFl~FG~~~L~ 157 (284)
.+.|+..++.|+..+.
T Consensus 87 ~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 87 AIIGMMLICAGVLIIN 102 (137)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4667778899998885
No 9
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=7.70 E-value=2.8e+02 Score=24.96 Aligned_cols=16 Identities=31% Similarity=0.125 Sum_probs=10.1
Q ss_pred HHHHHHHHhhhcCCHH
Q 023302 246 LAVVGGSMLASKISQR 261 (284)
Q Consensus 246 laV~~G~~l~~~ip~~ 261 (284)
++|.++.++..++|.+
T Consensus 113 PAVTla~~~~g~~~~~ 128 (279)
T 2w2e_A 113 PAVTLALVLARAIPPF 128 (279)
T ss_dssp HHHHHHHHHTTSSCHH
T ss_pred hHHHHHHHHcCCCCHH
Confidence 5666666677776644
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=7.67 E-value=1.1e+03 Score=20.91 Aligned_cols=16 Identities=0% Similarity=-0.122 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 023302 141 NSAATVLYAFFGLRLL 156 (284)
Q Consensus 141 ~~iagvlFl~FG~~~L 156 (284)
....++.+++.|+...
T Consensus 409 ~~~~~~~~~~~g~~~y 424 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMY 424 (445)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555565443
Done!