Query 023302
Match_columns 284
No_of_seqs 195 out of 1220
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 04:32:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023302.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023302hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 73.5 18 0.0013 28.3 11.0 29 243-271 271-299 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 38.3 91 0.0066 24.9 10.9 17 243-259 297-313 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 12.6 94 0.0068 23.8 4.1 24 133-156 374-397 (417)
4 d1kqfb2 f.23.22.1 (B:246-290) 7.4 2.7E+02 0.02 17.3 4.1 26 140-165 12-37 (45)
5 d1nvma1 a.5.7.1 (A:291-341) 4- 3.8 1.1E+02 0.0079 19.8 0.2 14 41-54 22-35 (51)
6 d1jb0i_ f.23.17.1 (I:) Subunit 3.8 3.2E+02 0.023 16.3 2.5 30 128-157 3-33 (38)
7 d2r6gg1 f.58.1.1 (G:7-296) Mal 3.5 8.6E+02 0.062 18.5 11.5 62 146-216 161-225 (290)
8 d1xrda1 f.3.1.1 (A:1-52) Light 3.4 2.3E+02 0.017 18.2 1.6 13 3-15 6-18 (52)
9 d2onkc1 f.58.1.1 (C:1-252) Mol 3.3 8.3E+02 0.061 18.0 9.2 66 142-216 133-201 (252)
10 d2heqa1 b.34.20.1 (A:1-71) Unc 2.8 1.9E+02 0.014 19.1 0.6 24 31-54 18-41 (71)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=73.53 E-value=18 Score=28.34 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Q 023302 243 CTSLAVVGGSMLASKISQRTVATIGGLLF 271 (284)
Q Consensus 243 ~t~laV~~G~~l~~~ip~~~i~~~agilF 271 (284)
+..++.....++.+|...+.+-.++.++.
T Consensus 271 ~~~~~~~~~~~l~~r~~~~~~~~~~~~~~ 299 (417)
T d1pv7a_ 271 LNASIMFFAPLIINRIGGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHTTHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhcccccccchhhhHHHH
Confidence 33444444555666666666655554444
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=38.30 E-value=91 Score=24.87 Aligned_cols=17 Identities=6% Similarity=-0.027 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhhcCC
Q 023302 243 CTSLAVVGGSMLASKIS 259 (284)
Q Consensus 243 ~t~laV~~G~~l~~~ip 259 (284)
+..++.+++.++.+++.
T Consensus 297 ~~~~~~~~~g~~~~~~~ 313 (447)
T d1pw4a_ 297 AGIPGTLLCGWMSDKVF 313 (447)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred hhhhhhhhhhhhhhhcc
Confidence 34445555555555554
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=12.64 E-value=94 Score=23.80 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=10.1
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q 023302 133 NLISRKHTNSAATVLYAFFGLRLL 156 (284)
Q Consensus 133 ~~ip~~~~~~iagvlFl~FG~~~L 156 (284)
+....+..-++.+++.+...+..+
T Consensus 374 ~~~g~~~~~~~~~~~~~~~~~~~~ 397 (417)
T d1pv7a_ 374 ESIGFQGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 4
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=7.41 E-value=2.7e+02 Score=17.27 Aligned_cols=26 Identities=12% Similarity=-0.014 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023302 140 TNSAATVLYAFFGLRLLYIAWMSDPK 165 (284)
Q Consensus 140 ~~~iagvlFl~FG~~~L~~a~~~~~~ 165 (284)
++.++.+.|..-.+-.++-=.+-.|+
T Consensus 12 ~Kpl~~~~~~~~~~~~~fHYv~vGPn 37 (45)
T d1kqfb2 12 LKPLAAAGFIATFAGLIFHYIGIGPN 37 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHhhheeCCC
Confidence 34444444433333333322334554
No 5
>d1nvma1 a.5.7.1 (A:291-341) 4-hydroxy-2-oxovalerate aldolase DmpG, communication domain {Pseudomonas sp. [TaxId: 306]}
Probab=3.83 E-value=1.1e+02 Score=19.78 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=11.3
Q ss_pred hhhhhccccccccc
Q 023302 41 SAKDLGRRGLILSQ 54 (284)
Q Consensus 41 ~~~~~~~~~~~~~~ 54 (284)
--.++|||+.+.++
T Consensus 22 il~ElGrR~~VgGQ 35 (51)
T d1nvma1 22 ILVELGHRRMVGGQ 35 (51)
T ss_dssp HHHHHHHHTCCTTC
T ss_pred HHHHHhhcccccch
Confidence 35678999999887
No 6
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=3.77 E-value=3.2e+02 Score=16.27 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=20.4
Q ss_pred hhhhccccchhHHHHHHHHHHH-HHHHHHHH
Q 023302 128 GRIVPNLISRKHTNSAATVLYA-FFGLRLLY 157 (284)
Q Consensus 128 G~~l~~~ip~~~~~~iagvlFl-~FG~~~L~ 157 (284)
|.+.+.++|--.+..++=.+.. +.|+..+|
T Consensus 3 G~yAAsyLPwI~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 3 GSYAASFLPWIFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp CSSTTTTHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred chhHHHhcchhHHHHHHHHHHHHHHHHHhee
Confidence 5677778887777776655555 56666665
No 7
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=3.52 E-value=8.6e+02 Score=18.46 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCccccccccc---cchhhHHHHHHHHHHhhhcChH
Q 023302 146 VLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSR---FCTPIFLESFILTFLAEWGDRS 216 (284)
Q Consensus 146 vlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~~~~~~~~~---~~~~~fl~aF~liFLAE~GDKT 216 (284)
...+-|.++.++.+.++-|+ |.+|+.. . .|.+..+.++.- ...|....++++.|+.-++|=.
T Consensus 161 ~~~~pf~~~~~~~~l~~i~~-----~l~EAA~-~---~GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~~f~ 225 (290)
T d2r6gg1 161 LGGIALHVWTIKGYFETIDS-----SLEEAAA-L---DGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVP 225 (290)
T ss_dssp TTTTHHHHHHHHHHHTTSCT-----HHHHHHH-H---TTCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCH
T ss_pred ccceeeeeeccchhhhcchh-----hhhhhHh-h---cCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhccccc
Confidence 34457888888877776442 3444322 1 233333322211 1247788999999999888853
No 8
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=3.45 E-value=2.3e+02 Score=18.17 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=8.9
Q ss_pred CcCCCcchhHHHH
Q 023302 3 LVSNPVRFLFVAL 15 (284)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (284)
..++|||.++...
T Consensus 6 ~~fDPRr~lva~~ 18 (52)
T d1xrda1 6 QLFDPRQALVGLA 18 (52)
T ss_dssp GTSSHHHHHHHHH
T ss_pred eEecHHHHHHHHH
Confidence 3578998766554
No 9
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.34 E-value=8.3e+02 Score=17.99 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHhhhccCCCccccccccc---cchhhHHHHHHHHHHhhhcChH
Q 023302 142 SAATVLYAFFGLRLLYIAWMSDPKSGQKKEMEEVEEKLESGQGKTTFRRFFSR---FCTPIFLESFILTFLAEWGDRS 216 (284)
Q Consensus 142 ~iagvlFl~FG~~~L~~a~~~~~~~~~~~e~eEve~~l~~~~~~~~~~~~~~~---~~~~~fl~aF~liFLAE~GDKT 216 (284)
..-....+-+....++.+.++-|+ |.+|+-.. .|.+..++++.- .+.|....++.+.|..-++|=.
T Consensus 133 i~~~~~~~p~~~~~~~~~~~~i~~-----~~~eaA~~----lGas~~~~~~~i~lP~~~p~i~~~~~l~~~~~~~~~~ 201 (252)
T d2onkc1 133 VAMLFVSVPIYINQAKEGFASVDV-----RLEHVART----LGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFG 201 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCH-----HHHHHHHH----TTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred hhccccccchhhHHHHHHHHhhhH-----HHHHHHHh----cCCCccccceEEEhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777778778776432 23333211 123322222111 2246778888888888887744
No 10
>d2heqa1 b.34.20.1 (A:1-71) Uncharacterized protein YorP {Bacillus subtilis [TaxId: 1423]}
Probab=2.82 E-value=1.9e+02 Score=19.14 Aligned_cols=24 Identities=25% Similarity=0.482 Sum_probs=16.6
Q ss_pred ccccCCCCCchhhhhccccccccc
Q 023302 31 FESDNEDPSRSAKDLGRRGLILSQ 54 (284)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~ 54 (284)
+|-+|+..-+-...+||+||+.-+
T Consensus 18 veinnnarygcphhvgrkgkiieh 41 (71)
T d2heqa1 18 VEINNNARYGCPHHVGRKGKIIEH 41 (71)
T ss_dssp EEECTTCTTTSTTCCSSEEEEEEE
T ss_pred EEecCCcccCCcccccccchHHHH
Confidence 344555555667789999998654
Done!