Query 023303
Match_columns 284
No_of_seqs 241 out of 1283
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:00:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697 Protein phosphatase 1B 100.0 4.2E-34 9.1E-39 255.4 12.2 173 90-283 11-183 (379)
2 PLN03145 Protein phosphatase 2 100.0 1.4E-31 3.1E-36 253.8 16.2 161 100-283 64-224 (365)
3 KOG0698 Serine/threonine prote 100.0 1.9E-31 4.2E-36 250.4 16.7 164 95-283 34-200 (330)
4 PF00481 PP2C: Protein phospha 100.0 3E-30 6.5E-35 233.1 14.9 156 102-283 1-158 (254)
5 PTZ00224 protein phosphatase 2 100.0 1.4E-28 3.1E-33 234.4 15.5 146 96-283 17-163 (381)
6 KOG0699 Serine/threonine prote 99.9 2.1E-27 4.5E-32 219.0 11.2 61 221-283 328-388 (542)
7 COG0631 PTC1 Serine/threonine 99.9 3.1E-26 6.7E-31 208.8 12.0 147 102-271 9-156 (262)
8 cd00143 PP2Cc Serine/threonine 99.9 8.4E-23 1.8E-27 181.5 16.5 154 102-281 2-155 (254)
9 smart00332 PP2Cc Serine/threon 99.9 1.6E-22 3.6E-27 180.5 17.6 155 100-282 5-159 (255)
10 KOG0700 Protein phosphatase 2C 99.9 3.4E-23 7.3E-28 194.2 10.8 131 145-277 97-259 (390)
11 PRK14559 putative protein seri 99.9 3.3E-22 7.1E-27 201.0 16.1 151 101-266 375-528 (645)
12 KOG1323 Serine/threonine phosp 99.8 1.1E-19 2.4E-24 166.6 12.1 130 142-278 139-297 (493)
13 PF13672 PP2C_2: Protein phosp 99.5 7.7E-14 1.7E-18 122.0 12.1 131 106-264 3-139 (212)
14 KOG1379 Serine/threonine prote 99.1 4.1E-10 9E-15 103.5 10.2 113 113-261 89-207 (330)
15 smart00331 PP2C_SIG Sigma fact 99.1 9.9E-10 2.1E-14 94.6 11.5 96 146-262 29-127 (193)
16 KOG0618 Serine/threonine phosp 98.8 6.8E-09 1.5E-13 106.7 5.0 145 101-282 522-675 (1081)
17 TIGR02865 spore_II_E stage II 97.6 0.0012 2.7E-08 68.9 14.4 116 109-264 561-678 (764)
18 PF07228 SpoIIE: Stage II spor 97.3 0.0048 1.1E-07 52.5 12.7 100 145-264 2-105 (193)
19 PF01383 CpcD: CpcD/allophycoc 24.0 48 0.001 23.0 1.4 13 269-283 39-51 (56)
No 1
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-34 Score=255.41 Aligned_cols=173 Identities=32% Similarity=0.409 Sum_probs=147.0
Q ss_pred ccceeeeccceeeEEEEccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHH
Q 023303 90 TKRAVIQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERM 169 (284)
Q Consensus 90 ~~~s~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l 169 (284)
++-..-..++-++||..|++|||-+|||+|...-.+.. .-..|.||||||||.|+++|++|+++|
T Consensus 11 eKhn~~G~GNglryg~SSMQGWR~eMEDah~A~~~l~~---------------~l~dWSfFAVfDGHAGs~va~~c~~hL 75 (379)
T KOG0697|consen 11 EKHNAEGEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPS---------------PLEDWSFFAVFDGHAGSQVANHCAEHL 75 (379)
T ss_pred ccccccCcCCceeeeeccccchhhhhhhhhhhhhcCCC---------------CccCceEEEEEcCccchHHHHHHHHHH
Confidence 34555566889999999999999999999988755421 125799999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEE
Q 023303 170 HLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVL 249 (284)
Q Consensus 170 ~~~L~~~l~~~~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL 249 (284)
.++|...-.+.... +....+.+++-|+..|+++|+.+....... .....+||||+.+++.+.++|++|||||||||
T Consensus 76 lehi~sse~F~~~~---k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~-~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl 151 (379)
T KOG0697|consen 76 LEHIISSEEFRGMT---KNGSVENVEKGIRTGFLSIDEIMRTLSDIS-KGSDRSGSTAVCVFVSPTHIYIINCGDSRAVL 151 (379)
T ss_pred HHHhhhhHHHhhhc---cCCcHHHHHhhHhhcceeHHHHHhhhhhhh-cccccCCceEEEEEecCceEEEEecCcchhhe
Confidence 99997765554422 345678899999999999999887655432 23346999999999999999999999999999
Q ss_pred EeCCeeeeCCCCCCCCCCCCCChhHHHHCCceec
Q 023303 250 CRGKVPVPLSVDHKVGTNAPPPPPRLHNLIAQSL 283 (284)
Q Consensus 250 ~r~g~~~~LT~DH~p~~~~E~~R~RI~~~GG~V~ 283 (284)
||+|.++.-|.||||.+|.|++ ||+++||.|+
T Consensus 152 ~rng~~~f~TqDHKP~~p~Eke--RIqnAGGSVM 183 (379)
T KOG0697|consen 152 CRNGEVVFSTQDHKPYLPKEKE--RIQNAGGSVM 183 (379)
T ss_pred ecCCceEEeccCCCCCChHHHH--HHhcCCCeEE
Confidence 9999999999999999999999 9999999985
No 2
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.97 E-value=1.4e-31 Score=253.84 Aligned_cols=161 Identities=29% Similarity=0.444 Sum_probs=130.9
Q ss_pred eeeEEEEccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHH
Q 023303 100 VPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVT 179 (284)
Q Consensus 100 ~~~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~ 179 (284)
+..+|..|++|.|++|||++++..++...- ...........||||||||||+.+++|++++|+..|.+...
T Consensus 64 ~~~~~~~s~~G~R~~nED~~~~~~~~~~~~--------~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~- 134 (365)
T PLN03145 64 VVRSGAWADIGSRSSMEDVYICVDNFMSDF--------GLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDED- 134 (365)
T ss_pred ceEEEEEccccCCCCCCCceEecccccccc--------cccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhc-
Confidence 456899999999999999998876653100 00001123468999999999999999999999999876322
Q ss_pred HhhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEEEeCCeeeeCC
Q 023303 180 AKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLS 259 (284)
Q Consensus 180 ~~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL~r~g~~~~LT 259 (284)
....++++|.++|.++|.+|.+..... ....+|||++++++.++++||||||||||||++++++++||
T Consensus 135 ----------~~~~~~~al~~af~~~d~~~~~~~~~~--~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT 202 (365)
T PLN03145 135 ----------FPREIEKVVSSAFLQTDTAFAEACSLD--ASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMS 202 (365)
T ss_pred ----------cchhHHHHHHHHHHHHhHHHHhhhccc--cCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEec
Confidence 124568889999999999987654322 22359999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCChhHHHHCCceec
Q 023303 260 VDHKVGTNAPPPPPRLHNLIAQSL 283 (284)
Q Consensus 260 ~DH~p~~~~E~~R~RI~~~GG~V~ 283 (284)
+||+|.++.|++ ||+++||.|.
T Consensus 203 ~DH~~~~~~E~~--RI~~~Gg~v~ 224 (365)
T PLN03145 203 RDHKPMCSKERK--RIEASGGYVY 224 (365)
T ss_pred CCCCCCCHHHHH--HHHHcCCcee
Confidence 999999999998 9999999873
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-31 Score=250.37 Aligned_cols=164 Identities=37% Similarity=0.490 Sum_probs=137.1
Q ss_pred eeccceeeEEEEccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHH
Q 023303 95 IQLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALA 174 (284)
Q Consensus 95 ~~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~ 174 (284)
........++.++.+|+|+.|||++.+.+.+...+. ......+||||||||||+.+|+|++++|+..|.
T Consensus 34 ~~~~~~~~~~~~~~~~~r~~med~~~~~~~~~~~~~-----------~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~ 102 (330)
T KOG0698|consen 34 SINESYRLGSLLSIRGRRRKMEDRHVQLPDFLEEDV-----------GGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLL 102 (330)
T ss_pred cccccccceEEEecCCCCCccCcceeeccccccccc-----------CCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 344556667778999999999999999988753211 111268999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCChHHHHHHHHHHHHH-HHHHHHhhhcCCCCCCCCCCcceEEEEEEeCC-eEEEEEeccCcEEEEeC
Q 023303 175 EELVTAKARLQDGGSWQEQWKKAFANSFL-KVDSEIGGALGGEPVAPETAGSTAVVAIISPT-LIIVANCGDSRAVLCRG 252 (284)
Q Consensus 175 ~~l~~~~~~~~~~~~~~~~i~~al~~af~-~~d~~i~~~~~~~~~~~~~~GsTavv~li~~~-~L~vANvGDSRavL~r~ 252 (284)
+.+...... ..++++++++|. ++|.++..+. .....+||||+++++.+. +|||||+||||||||+.
T Consensus 103 ~~~~~~~~~--------~~~~~a~~~~F~~~~D~~~~~~~----~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~ 170 (330)
T KOG0698|consen 103 EQLAFPKDR--------QDVKDALRRAFLTKTDSEFLEKR----EDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRK 170 (330)
T ss_pred hhhhcccch--------HHHHHHHHHHHHHHHHHHHHhhc----cCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecC
Confidence 988764422 568999999999 6999998761 123478999999999865 99999999999999985
Q ss_pred C-eeeeCCCCCCCCCCCCCChhHHHHCCceec
Q 023303 253 K-VPVPLSVDHKVGTNAPPPPPRLHNLIAQSL 283 (284)
Q Consensus 253 g-~~~~LT~DH~p~~~~E~~R~RI~~~GG~V~ 283 (284)
+ .+++||.||+|++++|+. ||+++||+|.
T Consensus 171 ~~~a~~Ls~DHkP~~~~E~~--RI~~~GG~v~ 200 (330)
T KOG0698|consen 171 GGVAVQLSVDHKPDREDERE--RIEAAGGRVS 200 (330)
T ss_pred CCeeeeCCCCCCCCcHHHHH--HHHHcCCEEE
Confidence 5 899999999999999999 9999999986
No 4
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.97 E-value=3e-30 Score=233.10 Aligned_cols=156 Identities=34% Similarity=0.498 Sum_probs=128.0
Q ss_pred eEEEEccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 023303 102 RWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAK 181 (284)
Q Consensus 102 ~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~~~ 181 (284)
.||+.+.+|+|++|||++++..++... .......+|||||||||..+++|++++|+..|.+.+....
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~-------------~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~ 67 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSN-------------SGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFND 67 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCC-------------TTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCeecCCCCCCcccCEEEEecCcccc-------------CCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhccccc
Confidence 378999999999999999999877421 1225789999999999999999999999988888776543
Q ss_pred hhhcCCCChHHHHHHHHHHHHHH-HHHHHhhhcCCCCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEEEeCCeee-eCC
Q 023303 182 ARLQDGGSWQEQWKKAFANSFLK-VDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPV-PLS 259 (284)
Q Consensus 182 ~~~~~~~~~~~~i~~al~~af~~-~d~~i~~~~~~~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL~r~g~~~-~LT 259 (284)
. ..+.++|..+|.+ ++..+...... . ....+||||++++|.+++|||||||||||||++.+... +||
T Consensus 68 ~---------~~~~~al~~a~~~~~~~~~~~~~~~-~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt 136 (254)
T PF00481_consen 68 G---------NDIEEALRQAFLAFTDESLYSDSEN-N-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLT 136 (254)
T ss_dssp C---------HHHHHHHHHHHHHHHHHHHHHHHHH-H-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS
T ss_pred c---------cchhhcccceeeecccccccccccc-c-ccccccccccccccccceeEEEeeeeeeeeeeeccccccccc
Confidence 2 2678999999999 88888762211 0 23379999999999999999999999999999999888 999
Q ss_pred CCCCCCCCCCCChhHHHHCCceec
Q 023303 260 VDHKVGTNAPPPPPRLHNLIAQSL 283 (284)
Q Consensus 260 ~DH~p~~~~E~~R~RI~~~GG~V~ 283 (284)
+||+|+++.|+. ||+++||.|.
T Consensus 137 ~dH~~~~~~E~~--RI~~~gg~v~ 158 (254)
T PF00481_consen 137 RDHKPSNPDERE--RIRKAGGRVS 158 (254)
T ss_dssp ---STTSHHHHH--HHHHTT-GEE
T ss_pred cccccchhhccc--eeeccccccc
Confidence 999999999998 9999999875
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.96 E-value=1.4e-28 Score=234.35 Aligned_cols=146 Identities=27% Similarity=0.319 Sum_probs=121.6
Q ss_pred eccceeeEEEEccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHH
Q 023303 96 QLDQVPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAE 175 (284)
Q Consensus 96 ~~~~~~~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~ 175 (284)
..+....+|+.+++|+|++|||++++... ....||||||||||..+|+|++++|+..|.+
T Consensus 17 ~~~~~~~~g~~s~~G~R~~nED~~~v~~~--------------------~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~ 76 (381)
T PTZ00224 17 AGNSIFRCASACVNGYRESMEDAHLLYLT--------------------DDWGFFGVFDGHVNDECSQYLARAWPQALEK 76 (381)
T ss_pred CCCccEEEEEEeCCCCCCCCCCeeEeccC--------------------CCceEEEEEeCCCcHHHHHHHHHHHHHHHHh
Confidence 35677889999999999999999886432 2457999999999999999999999977753
Q ss_pred HHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEe-CCeEEEEEeccCcEEEEeCCe
Q 023303 176 ELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIIS-PTLIIVANCGDSRAVLCRGKV 254 (284)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~-~~~L~vANvGDSRavL~r~g~ 254 (284)
.... ...+.|+++|..+|.+|.+... .+|||+++++|. +.++|||||||||||++|+|+
T Consensus 77 ~~~~-------------~~~~~l~~a~~~~d~~i~~~~~-------~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~ 136 (381)
T PTZ00224 77 EPEP-------------MTDERMEELCLEIDEEWMDSGR-------EGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGK 136 (381)
T ss_pred cccc-------------ccHHHHHHHHHHHHHHHHhccc-------CCCCeEEEEEEEECCEEEEEEcccceEEEEECCE
Confidence 2110 0134588899999999975432 469999998886 579999999999999999999
Q ss_pred eeeCCCCCCCCCCCCCChhHHHHCCceec
Q 023303 255 PVPLSVDHKVGTNAPPPPPRLHNLIAQSL 283 (284)
Q Consensus 255 ~~~LT~DH~p~~~~E~~R~RI~~~GG~V~ 283 (284)
+++||+||+|.++.|+. ||+++||+|.
T Consensus 137 ~~~LT~DH~~~~~~E~~--RI~~~gg~v~ 163 (381)
T PTZ00224 137 LVFATEDHKPNNPGERQ--RIEACGGRVV 163 (381)
T ss_pred EEEcccCCCCCCHHHHh--HHHHccCEec
Confidence 99999999999999888 9999999874
No 6
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=2.1e-27 Score=218.98 Aligned_cols=61 Identities=43% Similarity=0.568 Sum_probs=58.6
Q ss_pred CCCcceEEEEEEeCCeEEEEEeccCcEEEEeCCeeeeCCCCCCCCCCCCCChhHHHHCCceec
Q 023303 221 ETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHKVGTNAPPPPPRLHNLIAQSL 283 (284)
Q Consensus 221 ~~~GsTavv~li~~~~L~vANvGDSRavL~r~g~~~~LT~DH~p~~~~E~~R~RI~~~GG~V~ 283 (284)
..+||||+||++.+++|||||.|||||||+|+|+++-||.||+|..+.|.. ||.++||+|.
T Consensus 328 ~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~--RI~~AGG~vt 388 (542)
T KOG0699|consen 328 EDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETN--RIHAAGGQVT 388 (542)
T ss_pred CCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHH--HHHhcCCeEe
Confidence 378999999999999999999999999999999999999999999999998 9999999985
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=3.1e-26 Score=208.78 Aligned_cols=147 Identities=26% Similarity=0.263 Sum_probs=121.9
Q ss_pred eEEEEccccC-CCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHHH
Q 023303 102 RWGVNSVCGK-RPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTA 180 (284)
Q Consensus 102 ~~g~~s~~G~-R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~~ 180 (284)
.++..+..|. |.+|||++.+.++.. ... ..||+|||||||++++++|++.++..|.+.+...
T Consensus 9 ~~~~~s~~g~~R~~NeD~~~~~~~~~----------------~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~ 71 (262)
T COG0631 9 KVAGLSDVGTVRKHNEDAFLIKPNEN----------------GNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDET 71 (262)
T ss_pred eeeeeccCCCccCCCCcceeeccccC----------------Ccc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhc
Confidence 3555566665 899999999986321 112 6799999999999999999999999999998765
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEEEeCCeeeeCCC
Q 023303 181 KARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSV 260 (284)
Q Consensus 181 ~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL~r~g~~~~LT~ 260 (284)
... .....+.+.|.+++..++.++...... ......||||++++++.++++|+||||||||||+|++..+|||+
T Consensus 72 ~~~-----~~~~~~~~~l~~~~~~~n~~i~~~~~~-~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~ 145 (262)
T COG0631 72 NFN-----SLNESLEELLKEAILKANEAIAEEGQL-NEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTE 145 (262)
T ss_pred ccc-----ccchhHHHHHHHHHHHHHHHHHHhhhc-ccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEecc
Confidence 432 111227899999999999999887652 24556899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q 023303 261 DHKVGTNAPPP 271 (284)
Q Consensus 261 DH~p~~~~E~~ 271 (284)
||++.++.|+.
T Consensus 146 DH~~~~~~~~~ 156 (262)
T COG0631 146 DHSLVNRLEQR 156 (262)
T ss_pred CCcHHHHHHHh
Confidence 99999888887
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.90 E-value=8.4e-23 Score=181.53 Aligned_cols=154 Identities=35% Similarity=0.477 Sum_probs=128.7
Q ss_pred eEEEEccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 023303 102 RWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAK 181 (284)
Q Consensus 102 ~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~~~ 181 (284)
.++..+..|.|+.|||++.+...... ....+|+|+|||||+..++++++.+...|.+.+....
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~-----------------~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~ 64 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNN-----------------EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETL 64 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCC-----------------CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhcc
Confidence 36778888999999999998654210 2579999999999999999999999999998776432
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEEEeCCeeeeCCCC
Q 023303 182 ARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVD 261 (284)
Q Consensus 182 ~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL~r~g~~~~LT~D 261 (284)
. .....+...|.++|.+++..+....... .....+|||++++++.+++++++|+||||+|++++++..++|.|
T Consensus 65 ~------~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~d 137 (254)
T cd00143 65 T------LSEEDIEEALRKAFLRADEEILEEAQDE-PDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKD 137 (254)
T ss_pred c------cchHHHHHHHHHHHHHHHHHHHHhhhhc-cCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCC
Confidence 1 1246778899999999999998765432 23347899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChhHHHHCCce
Q 023303 262 HKVGTNAPPPPPRLHNLIAQ 281 (284)
Q Consensus 262 H~p~~~~E~~R~RI~~~GG~ 281 (284)
|++.++.|+. ||...+|.
T Consensus 138 h~~~~~~~~~--~i~~~~~~ 155 (254)
T cd00143 138 HKPVNEEERE--RIEKAGGR 155 (254)
T ss_pred CCCcChHHHH--HHHHcCCc
Confidence 9999876666 99999986
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.90 E-value=1.6e-22 Score=180.47 Aligned_cols=155 Identities=40% Similarity=0.546 Sum_probs=128.5
Q ss_pred eeeEEEEccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHH
Q 023303 100 VPRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVT 179 (284)
Q Consensus 100 ~~~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~ 179 (284)
...+++.+..|+|..|||++++..++. ....+|+|||||||..+|+++++.+...+.+....
T Consensus 5 ~~~~~~~~~~~~r~~neD~~~~~~~~~------------------~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~ 66 (255)
T smart00332 5 GLRYGLSSMQGVRKPMEDAHVITPDLS------------------DSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIK 66 (255)
T ss_pred ceeEEEecCCCCCCCCcceEEEeccCC------------------CCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhh
Confidence 345677788899999999998865421 35789999999999999999999999988776543
Q ss_pred HhhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEEEeCCeeeeCC
Q 023303 180 AKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLS 259 (284)
Q Consensus 180 ~~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL~r~g~~~~LT 259 (284)
.. .....+.+.|.++|.+++..+........ ....+|||++++++.++++|++|+||||+|++|+++..+||
T Consensus 67 ~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt 138 (255)
T smart00332 67 HK-------DELEDVEEALRKAFLKTDEEILEELESLE-EDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLT 138 (255)
T ss_pred cc-------cchhHHHHHHHHHHHHHHHHHHHhhhhcc-CCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcC
Confidence 21 11245788899999999999987654331 33478999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCChhHHHHCCcee
Q 023303 260 VDHKVGTNAPPPPPRLHNLIAQS 282 (284)
Q Consensus 260 ~DH~p~~~~E~~R~RI~~~GG~V 282 (284)
.||++.++.|.. ||...++.+
T Consensus 139 ~dh~~~~~~~~~--~i~~~~~~~ 159 (255)
T smart00332 139 EDHKPSNEDERA--RIEAAGGFV 159 (255)
T ss_pred CCCCCcCHHHHH--HHHHcCCEE
Confidence 999999888887 999998865
No 10
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.89 E-value=3.4e-23 Score=194.22 Aligned_cols=131 Identities=27% Similarity=0.358 Sum_probs=105.7
Q ss_pred CceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcC----------------------CC-ChHHHHHHHHHHH
Q 023303 145 VLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQD----------------------GG-SWQEQWKKAFANS 201 (284)
Q Consensus 145 ~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~~~~~~~~----------------------~~-~~~~~i~~al~~a 201 (284)
..+.|+||||||||..+++|++++|+.++..++......... .. .....+.++|.+|
T Consensus 97 ~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~A 176 (390)
T KOG0700|consen 97 NGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKA 176 (390)
T ss_pred CCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHH
Confidence 679999999999999999999999999999777653322100 00 1157789999999
Q ss_pred HHHHHHHHhhhcCC---CCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEEEe---CC---eeeeCCCCCCCCCCCCCCh
Q 023303 202 FLKVDSEIGGALGG---EPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCR---GK---VPVPLSVDHKVGTNAPPPP 272 (284)
Q Consensus 202 f~~~d~~i~~~~~~---~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL~r---~g---~~~~LT~DH~p~~~~E~~R 272 (284)
|.++++.|...... ..+.-..+|||++|+++++..|||||+|||||||++ ++ .++|||.||+.++++|+.
T Consensus 177 f~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~- 255 (390)
T KOG0700|consen 177 FEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVR- 255 (390)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHH-
Confidence 99999999764421 112335899999999999999999999999999975 22 689999999999999999
Q ss_pred hHHHH
Q 023303 273 PRLHN 277 (284)
Q Consensus 273 ~RI~~ 277 (284)
||+.
T Consensus 256 -Rir~ 259 (390)
T KOG0700|consen 256 -RIRS 259 (390)
T ss_pred -HHHH
Confidence 6654
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.88 E-value=3.3e-22 Score=201.01 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=110.8
Q ss_pred eeEEEEccccC-CCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHH
Q 023303 101 PRWGVNSVCGK-RPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVT 179 (284)
Q Consensus 101 ~~~g~~s~~G~-R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~ 179 (284)
..++..|++|+ |++|||++.+..++...... .+ .......+|+|||||||+.++++|++.+.+.|.+.+..
T Consensus 375 l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~--~~------~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~ 446 (645)
T PRK14559 375 LEDAGRTDVGRQRHHNEDYFGINTRIQKLENP--HG------RIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQ 446 (645)
T ss_pred EEEEEECCCCCCCcccCCcccccccccccccc--cc------cccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 55788899997 99999998776543210000 00 00013578999999999999999888888888776643
Q ss_pred HhhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCCCCCcceEEEEEEeCCeEEEEEeccCcEEEE-eCCeeee
Q 023303 180 AKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEP-VAPETAGSTAVVAIISPTLIIVANCGDSRAVLC-RGKVPVP 257 (284)
Q Consensus 180 ~~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~-~~~~~~GsTavv~li~~~~L~vANvGDSRavL~-r~g~~~~ 257 (284)
.... . ...++.|+++|..+|..|.+...... .....||||++++++.++++|++||||||+|++ |+|+..+
T Consensus 447 ~~~~----~---~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~Q 519 (645)
T PRK14559 447 HWQD----E---LPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQ 519 (645)
T ss_pred hhcc----c---ccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEE
Confidence 2111 0 11256788999999999976543221 123469999999999999999999999999987 5789999
Q ss_pred CCCCCCCCC
Q 023303 258 LSVDHKVGT 266 (284)
Q Consensus 258 LT~DH~p~~ 266 (284)
||+||++..
T Consensus 520 LT~DHs~~~ 528 (645)
T PRK14559 520 LTVDHEVGQ 528 (645)
T ss_pred eCCCCCHHH
Confidence 999999964
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-19 Score=166.63 Aligned_cols=130 Identities=27% Similarity=0.341 Sum_probs=107.4
Q ss_pred CCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcC-----------------------------CCChHH
Q 023303 142 PDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQD-----------------------------GGSWQE 192 (284)
Q Consensus 142 ~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~~~~~~~~-----------------------------~~~~~~ 192 (284)
.+...+++|.+||||.|..+|-.+++.+++++.+.+....+.+.. ......
T Consensus 139 a~~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~ 218 (493)
T KOG1323|consen 139 APRADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEH 218 (493)
T ss_pred CCCCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHH
Confidence 445679999999999999999999999999999888755443211 112345
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEEEeCCeeeeCCCCCCCCCCCCCCh
Q 023303 193 QWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVLCRGKVPVPLSVDHKVGTNAPPPP 272 (284)
Q Consensus 193 ~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL~r~g~~~~LT~DH~p~~~~E~~R 272 (284)
.+..+|..||+.+|++|.+....+ ...+||||+++++.-.+||+||.|||||||.|+++..+||.+.+|. .||+
T Consensus 219 LViGAlEsAFqemDeqiarer~~~---~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe--tERq- 292 (493)
T KOG1323|consen 219 LVIGALESAFQEMDEQIARERQVW---RLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQ- 292 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh---cCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--HHHH-
Confidence 678899999999999998766643 3378999999999999999999999999999999999999999994 3555
Q ss_pred hHHHHC
Q 023303 273 PRLHNL 278 (284)
Q Consensus 273 ~RI~~~ 278 (284)
|||..
T Consensus 293 -RlQ~L 297 (493)
T KOG1323|consen 293 -RLQEL 297 (493)
T ss_pred -HHHHH
Confidence 99864
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.53 E-value=7.7e-14 Score=121.96 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=81.4
Q ss_pred EccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhc
Q 023303 106 NSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQ 185 (284)
Q Consensus 106 ~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~~~~~~~ 185 (284)
.+++|+|+.|||++.+... .+..+++|+||+||...++.++..+...+.+.+......
T Consensus 3 ~sh~~~~~~nqD~~~~~~~--------------------~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~-- 60 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD--------------------DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQ-- 60 (212)
T ss_dssp ----TTSSS--EEEEEE-T--------------------CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred ccccCCCCCCCCCEEeeeC--------------------CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccc--
Confidence 4788999999999986532 245777999999999999999999999998888765432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHH-----hhhcCCCCCCCCCCcceEEEEEEeCCeEEEEEeccCcEEE-EeCCeeeeCC
Q 023303 186 DGGSWQEQWKKAFANSFLKVDSEI-----GGALGGEPVAPETAGSTAVVAIISPTLIIVANCGDSRAVL-CRGKVPVPLS 259 (284)
Q Consensus 186 ~~~~~~~~i~~al~~af~~~d~~i-----~~~~~~~~~~~~~~GsTavv~li~~~~L~vANvGDSRavL-~r~g~~~~LT 259 (284)
.......+.++.+...+...+ ..... ......+||++++++.++.++++|+||||+|+ .++++..+++
T Consensus 61 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~ 134 (212)
T PF13672_consen 61 ---ESPSSIEALIRAIKKEILSIVRAFQSAKQAD---LELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLT 134 (212)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH----HHHHHS---GGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S
T ss_pred ---cchHHHHHHHHHHHHHHHHHhhhhhhhhhcc---ccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcC
Confidence 111112233333333332221 00011 12336799999999999999999999999964 6799999999
Q ss_pred CCCCC
Q 023303 260 VDHKV 264 (284)
Q Consensus 260 ~DH~p 264 (284)
.||+.
T Consensus 135 ~~~~~ 139 (212)
T PF13672_consen 135 DDHSG 139 (212)
T ss_dssp ---BH
T ss_pred CCccc
Confidence 99974
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.11 E-value=4.1e-10 Score=103.50 Aligned_cols=113 Identities=20% Similarity=0.157 Sum_probs=79.0
Q ss_pred CCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHH----HHHHHHHHHHHHHHHHHhhhhcCCC
Q 023303 113 PEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVAN----YCCERMHLALAEELVTAKARLQDGG 188 (284)
Q Consensus 113 ~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~----~as~~l~~~L~~~l~~~~~~~~~~~ 188 (284)
+.=||++++..+ ....+.||+||.|||.--- ..++.|+....+..+...
T Consensus 89 ~~GEDa~Fvss~--------------------~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~------- 141 (330)
T KOG1379|consen 89 KGGEDAWFVSSN--------------------PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSD------- 141 (330)
T ss_pred CCCCcceeeccC--------------------cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccc-------
Confidence 457899999765 3578999999999875432 235555555555443321
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEe--CCeEEEEEeccCcEEEEeCCeeeeCCCC
Q 023303 189 SWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIIS--PTLIIVANCGDSRAVLCRGKVPVPLSVD 261 (284)
Q Consensus 189 ~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~--~~~L~vANvGDSRavL~r~g~~~~LT~D 261 (284)
.........|..+|.++-.+ ..+..++|||+++++. +.+||+||+|||...++|+|++++-|..
T Consensus 142 ~~~~~P~~lL~~ay~~l~~~---------~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~ 207 (330)
T KOG1379|consen 142 FNPSDPVNLLEKAYAELKSQ---------KVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPE 207 (330)
T ss_pred cCCCChHHHHHHHHHHHhhc---------CCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCch
Confidence 11224567777777666322 2334688999999988 8999999999999999999987666554
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.09 E-value=9.9e-10 Score=94.58 Aligned_cols=96 Identities=18% Similarity=0.059 Sum_probs=72.9
Q ss_pred ceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcc
Q 023303 146 LVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGS 225 (284)
Q Consensus 146 ~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~~~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~Gs 225 (284)
...+|+|+||||+...|.+++..+...+.+.+... ..+...+..+|+.+.... ...+|+
T Consensus 29 ~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~---------------~~~~~~l~~~n~~l~~~~------~~~~~~ 87 (193)
T smart00331 29 GRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG---------------ISLSQILERLNRAIYENG------EDGMFA 87 (193)
T ss_pred CeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC---------------CCHHHHHHHHHHHHHhcC------CCCcEE
Confidence 47899999999999999999999988887665321 134455667777776541 235799
Q ss_pred eEEEEEE--eCCeEEEEEeccCcEEEEe-CCeeeeCCCCC
Q 023303 226 TAVVAII--SPTLIIVANCGDSRAVLCR-GKVPVPLSVDH 262 (284)
Q Consensus 226 Tavv~li--~~~~L~vANvGDSRavL~r-~g~~~~LT~DH 262 (284)
|++++++ ..++++++|+||+|+++++ ++..++++.+.
T Consensus 88 T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~ 127 (193)
T smart00331 88 TLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL 127 (193)
T ss_pred EEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC
Confidence 9999998 5789999999999999998 55555555543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.76 E-value=6.8e-09 Score=106.67 Aligned_cols=145 Identities=23% Similarity=0.317 Sum_probs=117.3
Q ss_pred eeEEEEccccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHHH
Q 023303 101 PRWGVNSVCGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTA 180 (284)
Q Consensus 101 ~~~g~~s~~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~~ 180 (284)
..||++...|+|..+-=+...+.+|.. .+...||+|||-+-..+..+++..+..+|.++++..
T Consensus 522 ~t~Gv~~~~gqrnk~c~~~~~v~nf~~-----------------~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~ 584 (1081)
T KOG0618|consen 522 WTYGVAGVSGQRNKVCSRAVWVENFFL-----------------NPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLY 584 (1081)
T ss_pred eeeccchhcccccchhhhhhhhhhccc-----------------CCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 348999999999877666555555542 457899999999999999999999999999999887
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEeC--------CeEEEEEeccCcEEEEeC
Q 023303 181 KARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIISP--------TLIIVANCGDSRAVLCRG 252 (284)
Q Consensus 181 ~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~~--------~~L~vANvGDSRavL~r~ 252 (284)
.+. .+.|.++|..++.++..... .-|..++.+.|.. .++.+||+|+|.||+|++
T Consensus 585 ~~e-----------t~~mr~~fl~~~rklg~~g~-------~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~n 646 (1081)
T KOG0618|consen 585 GNE-----------TEQMRNTFLRLNRKLGEEGQ-------VLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRN 646 (1081)
T ss_pred cCh-----------HHHHHHHHHHHhhhhhhhhc-------cccchhhheeecccccCcccchhhhHhhhccchhhhhhc
Confidence 654 34499999999999965443 4466666666653 478999999999999999
Q ss_pred CeeeeCCCCC-CCCCCCCCChhHHHHCCcee
Q 023303 253 KVPVPLSVDH-KVGTNAPPPPPRLHNLIAQS 282 (284)
Q Consensus 253 g~~~~LT~DH-~p~~~~E~~R~RI~~~GG~V 282 (284)
|+..|+|+-. .+-+++|.+ ||...+|.|
T Consensus 647 g~~~p~t~~~~~~v~~eE~~--RI~~~~g~i 675 (1081)
T KOG0618|consen 647 GKPLPTTRSPMLEVDREEYK--RIVDSKGFI 675 (1081)
T ss_pred CCcCcccccccccCCHHHHH--HHHHhcCee
Confidence 9999997755 445889999 999999887
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=97.60 E-value=0.0012 Score=68.89 Aligned_cols=116 Identities=13% Similarity=-0.039 Sum_probs=80.6
Q ss_pred ccCCCCCceeEEEecchhhhhhhhccccccCCCCCCCceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 023303 109 CGKRPEMEDAVAVIPAFLQIQTHVLMDTVTDQFPDQVLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGG 188 (284)
Q Consensus 109 ~G~R~~nED~~~v~~~~~~~p~~~l~~~~~~~~~~~~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~~~~~~~~~~ 188 (284)
++.+..+.|.+.+.+.- ....+++|.||+|....|...+..+...+.+.+....
T Consensus 561 k~g~~vsGD~y~~~~l~-------------------~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~------- 614 (764)
T TIGR02865 561 KDGELVSGDSYSFGKLS-------------------AGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGF------- 614 (764)
T ss_pred CCCCcccCceEEEEEEC-------------------CCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCC-------
Confidence 34466788888765421 3467899999999666666667777666655443211
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceEEEEEEe--CCeEEEEEeccCcEEEEeCCeeeeCCCCCCC
Q 023303 189 SWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAGSTAVVAIIS--PTLIIVANCGDSRAVLCRGKVPVPLSVDHKV 264 (284)
Q Consensus 189 ~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~GsTavv~li~--~~~L~vANvGDSRavL~r~g~~~~LT~DH~p 264 (284)
. ...++..+|..+..... ..+.+|+.++++. ..++.++|+|+++.++.|++++.+++..+-|
T Consensus 615 -~-------~~~ai~~lN~~L~~~~~------~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP 678 (764)
T TIGR02865 615 -D-------REVAIKTVNSILSLRST------DEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP 678 (764)
T ss_pred -C-------HHHHHHHHHHHHHhCCC------CCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce
Confidence 0 24456667766643321 2468999999985 6899999999999999999988888766655
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=97.35 E-value=0.0048 Score=52.53 Aligned_cols=100 Identities=21% Similarity=0.103 Sum_probs=66.5
Q ss_pred CceEEEEEEcCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCc
Q 023303 145 VLVHFFGVYDGHGGCQVANYCCERMHLALAEELVTAKARLQDGGSWQEQWKKAFANSFLKVDSEIGGALGGEPVAPETAG 224 (284)
Q Consensus 145 ~~~~lfgVfDGHGG~~~a~~as~~l~~~L~~~l~~~~~~~~~~~~~~~~i~~al~~af~~~d~~i~~~~~~~~~~~~~~G 224 (284)
....++.|.|+.|-.-.|.+.+..+...+........ . ....+..+|+.+....... ...
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~--------~-------p~~~l~~ln~~l~~~~~~~-----~~~ 61 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGL--------D-------PEELLEALNRRLYRDLKGD-----NRY 61 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT--------S-------HHHHHHHHHHHHHHHTTTT-----STT
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCC--------C-------HHHHHHHHHHHHHHHhhhc-----ccc
Confidence 3578999999999655666666677777766553211 0 3444555566664333311 367
Q ss_pred ceEEEEEEe--CCeEEEEEeccCcEEEEeC--CeeeeCCCCCCC
Q 023303 225 STAVVAIIS--PTLIIVANCGDSRAVLCRG--KVPVPLSVDHKV 264 (284)
Q Consensus 225 sTavv~li~--~~~L~vANvGDSRavL~r~--g~~~~LT~DH~p 264 (284)
+|++++++. .++++++|+|++++++++. +....+.....|
T Consensus 62 ~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~ 105 (193)
T PF07228_consen 62 ATACYAIIDPETGTLTYANAGHPPPLLLRPGGREIEQLESEGPP 105 (193)
T ss_dssp EEEEEEEEETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSBB
T ss_pred ceEEEEEecccceEEEEeCCCCCCEEEEeccccceeecccCccc
Confidence 888888876 4789999999999999997 555555444444
No 19
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=23.95 E-value=48 Score=22.98 Aligned_cols=13 Identities=8% Similarity=0.048 Sum_probs=9.7
Q ss_pred CCChhHHHHCCceec
Q 023303 269 PPPPPRLHNLIAQSL 283 (284)
Q Consensus 269 E~~R~RI~~~GG~V~ 283 (284)
|.+ ||++.||+|+
T Consensus 39 ~~q--~I~r~GGkIv 51 (56)
T PF01383_consen 39 EMQ--RINRQGGKIV 51 (56)
T ss_dssp HHH--HHHHCT-EEE
T ss_pred HHH--HHHHCCCEEE
Confidence 556 9999999985
Done!