BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023305
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
pdb|2QMX|A Chain A, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
Length = 283
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 124/288 (43%), Positives = 157/288 (54%), Gaps = 33/288 (11%)
Query: 3 QGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDL 62
QG PG++SE AAL+ E +PC+ F+D F AV AD AV+PIENS GSIH+NYDL
Sbjct: 12 QGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDL 68
Query: 63 LLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALAS-SDIVLTQLGVARENVD 121
LLR + I+ E + CLL LPG + + SHPQAL + T + E
Sbjct: 69 LLRRPVVILAETFVKVEHCLLGLPGASVETATKAXSHPQALVQCHNFFATHPQIRAEAAY 128
Query: 122 DTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDNITRFLVLARD------ 175
DTA +A+ VA + + E+YGL+IL + + DE NITRF +A +
Sbjct: 129 DTAGSAKXVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAHENNPDIS 188
Query: 176 -----PIIPRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVV 230
P + R KTSIVF L G LF+ALA FALR I+LTKIESRP RK
Sbjct: 189 HLKVRPDVARQ----KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRK------ 238
Query: 231 DDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCY 278
K F+YLFY DF D NAL +L+EFAT ++VLG Y
Sbjct: 239 --------KAFEYLFYADFIGHREDQNVHNALENLREFATXVKVLGSY 278
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
Length = 313
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 128/287 (44%), Gaps = 31/287 (10%)
Query: 4 GLPGSFSEDAALKAYPKC---ETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNY 60
G G+F+E AAL P +PC + V AD A +PIENS G +
Sbjct: 13 GPQGTFTE-AALXQVPGAADATRIPCTNVNTALERVRAGEADAAXVPIENSVEGGVTATL 71
Query: 61 DLLLR-HRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVAREN 119
D + L I+ E + F L+A PG++ +KR+ +H A A + + + N
Sbjct: 72 DAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEH---LPN 128
Query: 120 VDDTASAAQYVASNGL------RDXXXXXXXXXXEIYGLNILADRIQDEPDNITRFLVLA 173
D ++ ++ GL + E GLN+LA+ I D PD +TRF++++
Sbjct: 129 ADYVPGSSTAASAXGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRFILVS 188
Query: 174 RDPIIPRTDKLFKTSIVFTLDEG-PGVLFKALAVFALREINLTKIESRPQRKRPLRVVDD 232
R +P KT++V L E PG L + L FA R +NL++IESRP
Sbjct: 189 RPGALPERTGADKTTVVVPLPEDHPGALXEILDQFASRGVNLSRIESRP----------- 237
Query: 233 SNNGTAKYFD-YLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCY 278
T +Y Y F ID + D R +AL L + R LG Y
Sbjct: 238 ----TGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSY 280
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|2QMW|B Chain B, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 267
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 13/227 (5%)
Query: 4 GLPGSFSEDAALKAYPKCETV--PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD 61
G G+FS A + + + E P + KAV V+PIENS G+I+ D
Sbjct: 10 GPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVAD 69
Query: 62 LLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVD 121
L + + GE++L NF L +K+V S A++ + + Q + VD
Sbjct: 70 ALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVD 129
Query: 122 DTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQDEPDNITRFLVLARDPIIPRT 181
T + + NG+ E YG + I+D P N+TRFLV+ +
Sbjct: 130 STIQSLTKI-ENGV---AAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQQFDQN 185
Query: 182 DKLFKTSIVFTL---DEGPGVLFKALAVFALREINLTKIESRPQRKR 225
TS+ F + + PG+L L FAL INL+ IESRP + +
Sbjct: 186 ----ATSLXFLITPXHDKPGLLASVLNTFALFNINLSWIESRPLKTQ 228
>pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium
Adolescentis
Length = 329
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 98/247 (39%), Gaps = 30/247 (12%)
Query: 44 AVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKAD--QLKRVLSHPQ 101
++ EN+ G + N D L+ + +VG ++ N A AD + + +HP
Sbjct: 60 GIVAWENNVEGYVVPNLDALIDAK-DLVGFARVGVNVEFDAYVAQGADPAEARIATAHPH 118
Query: 102 ALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDXXXXXXXXXXEIYGLNILADRIQD 161
LA + + ++ + A+A + + + E+Y + + IQD
Sbjct: 119 GLAQCKRFIAEHRLSTQPATSNAAACRDLIPGEI----AFGPAICGELYDITRIGTAIQD 174
Query: 162 EPDNITRFLVL------ARDPIIPRTDKLFKTSIVFTL---DEGPGVLFKALAVFALREI 212
T FLVL AR PR + + V TL GPGVL L VF +
Sbjct: 175 YQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGL 234
Query: 213 NLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFL 272
N T SRP + R GT Y F + +A+ + R ++AL + E +
Sbjct: 235 NXTSFISRPIKGR---------TGT-----YSFIVTLDAAPWEERFRDALVEIAEHGDWA 280
Query: 273 RVLGCYP 279
+ L YP
Sbjct: 281 KTLAVYP 287
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 188 SIVFTLDEGPGVLFKALAVFALREINLTKIESRPQR 223
S++F+L E G L K L +F +INLT IESRP R
Sbjct: 36 SLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSR 71
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 4 GLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL 63
GLPG + ALK TV + E T+ A+E + D L E I R+ +
Sbjct: 121 GLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEE-- 178
Query: 64 LRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSH-------PQALASSDIVLTQLG 114
+R + I+ + N L+ PG+ + L+ P+ L IV Q+G
Sbjct: 179 IRRVIQILLR-RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG 235
>pdb|3N9T|A Chain A, Cryatal Structure Of Hydroxyquinol 1,2-Dioxygenase From
Pseudomonas Putida Dll-E4
Length = 290
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 31 DTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLA 77
D +KAVE ++D+AV E S + + L+RH V EV+L
Sbjct: 3 DHYKAVEALISDQAVDSFETSPNPRFKQIMQSLVRHLHDFVSEVELT 49
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 234 NNGTAKYFDYLFYIDFEASMADPRAQNALGHLQE 267
+NGT D + ++DF + ADP Q L LQE
Sbjct: 278 HNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQE 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,545,298
Number of Sequences: 62578
Number of extensions: 278140
Number of successful extensions: 520
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 8
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)