Query 023305
Match_columns 284
No_of_seqs 208 out of 1126
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qmx_A Prephenate dehydratase; 100.0 9E-93 3.1E-97 650.8 31.5 263 1-281 10-281 (283)
2 3mwb_A Prephenate dehydratase; 100.0 8.2E-92 2.8E-96 651.9 29.9 268 1-282 10-284 (313)
3 2qmw_A PDT, prephenate dehydra 100.0 1.1E-90 3.7E-95 632.0 28.1 256 1-279 7-267 (267)
4 3luy_A Probable chorismate mut 100.0 3.5E-88 1.2E-92 631.4 24.9 263 1-282 10-290 (329)
5 1phz_A Protein (phenylalanine 99.9 1.1E-21 3.6E-26 187.2 9.7 81 182-277 30-111 (429)
6 2ko1_A CTR148A, GTP pyrophosph 97.3 0.0016 5.5E-08 47.5 9.4 68 185-270 4-71 (88)
7 1zpv_A ACT domain protein; str 97.1 0.0039 1.3E-07 45.9 9.8 38 186-223 5-42 (91)
8 2f1f_A Acetolactate synthase i 97.0 0.0056 1.9E-07 51.2 10.5 68 186-270 3-70 (164)
9 2pc6_A Probable acetolactate s 96.8 0.0078 2.7E-07 50.4 10.1 68 186-270 4-71 (165)
10 2fgc_A Acetolactate synthase, 96.7 0.011 3.8E-07 50.7 10.2 72 186-274 29-100 (193)
11 1y7p_A Hypothetical protein AF 94.7 0.056 1.9E-06 47.2 6.5 67 186-268 4-70 (223)
12 2f06_A Conserved hypothetical 94.3 0.2 6.9E-06 39.9 8.5 35 187-221 72-107 (144)
13 2jhe_A Transcription regulator 94.3 0.29 9.9E-06 39.5 9.7 62 189-271 3-64 (190)
14 1wdn_A GLNBP, glutamine bindin 93.9 0.49 1.7E-05 38.4 10.4 92 5-112 115-206 (226)
15 1u8s_A Glycine cleavage system 93.7 0.88 3E-05 37.9 11.8 36 186-221 93-128 (192)
16 3h7m_A Sensor protein; histidi 93.4 0.46 1.6E-05 39.0 9.5 92 5-112 123-214 (234)
17 2f06_A Conserved hypothetical 93.1 0.42 1.4E-05 37.9 8.4 35 187-221 7-41 (144)
18 4f3p_A Glutamine-binding perip 92.9 0.66 2.3E-05 38.9 9.9 78 5-87 136-213 (249)
19 3mpk_A Virulence sensor protei 92.7 0.28 9.7E-06 42.0 7.4 92 5-112 145-237 (267)
20 3k4u_A Binding component of AB 92.5 0.21 7.2E-06 41.9 6.1 92 5-112 121-212 (245)
21 3kzg_A Arginine 3RD transport 92.5 0.37 1.3E-05 40.1 7.6 95 5-112 116-214 (237)
22 1xt8_A Putative amino-acid tra 91.4 1 3.5E-05 38.9 9.6 88 5-112 159-249 (292)
23 3del_B Arginine binding protei 90.3 1.3 4.3E-05 36.7 8.7 87 5-112 124-216 (242)
24 2nyi_A Unknown protein; protei 90.0 1.1 3.9E-05 37.5 8.2 35 186-220 93-127 (195)
25 3lou_A Formyltetrahydrofolate 89.8 2 6.9E-05 38.8 10.1 67 186-267 10-81 (292)
26 3qax_A Probable ABC transporte 88.9 1.9 6.3E-05 36.1 8.8 87 5-112 145-237 (268)
27 3obi_A Formyltetrahydrofolate 88.4 3 0.0001 37.5 10.3 67 186-267 6-75 (288)
28 3o1l_A Formyltetrahydrofolate 88.4 3.1 0.00011 37.7 10.4 67 186-267 22-91 (302)
29 4h5g_A Amino acid ABC superfam 88.3 0.75 2.6E-05 38.8 5.9 43 5-47 129-171 (243)
30 3i6v_A Periplasmic His/Glu/Gln 87.9 2.3 8E-05 35.2 8.7 86 5-112 112-201 (232)
31 3tql_A Arginine-binding protei 87.6 0.63 2.2E-05 37.8 4.8 92 5-112 115-212 (227)
32 3k5p_A D-3-phosphoglycerate de 87.6 4.9 0.00017 38.0 11.5 69 186-273 343-411 (416)
33 1u8s_A Glycine cleavage system 87.4 1.6 5.6E-05 36.2 7.3 35 187-221 7-41 (192)
34 3n0v_A Formyltetrahydrofolate 87.3 2.6 8.9E-05 37.9 9.1 67 186-267 8-76 (286)
35 3nrb_A Formyltetrahydrofolate 86.6 3.9 0.00013 36.7 9.8 67 186-267 7-74 (287)
36 3kbr_A Cyclohexadienyl dehydra 86.5 0.75 2.6E-05 38.0 4.7 43 5-47 131-173 (239)
37 4i62_A Amino acid ABC transpor 86.4 1 3.5E-05 37.7 5.6 43 5-47 156-198 (269)
38 2y7i_A STM4351; arginine-bindi 85.1 1.3 4.6E-05 36.0 5.6 43 5-47 118-160 (229)
39 2pyy_A Ionotropic glutamate re 85.1 4 0.00014 32.8 8.5 114 20-148 41-163 (228)
40 4dz1_A DALS D-alanine transpor 85.0 2 6.8E-05 36.3 6.8 75 5-87 143-225 (259)
41 1sc6_A PGDH, D-3-phosphoglycer 84.2 4.6 0.00016 37.9 9.5 64 186-268 331-394 (404)
42 2vha_A Periplasmic binding tra 83.4 2.4 8.3E-05 36.2 6.7 93 5-112 136-232 (287)
43 3hv1_A Polar amino acid ABC up 82.9 0.89 3E-05 38.5 3.7 92 5-112 133-232 (268)
44 1ii5_A SLR1257 protein; membra 82.7 15 0.00052 29.4 11.2 117 20-149 45-168 (233)
45 2yjp_A Putative ABC transporte 82.7 1.8 6E-05 37.5 5.6 43 5-47 170-212 (291)
46 2nyi_A Unknown protein; protei 81.8 5.1 0.00017 33.5 7.9 35 187-221 6-40 (195)
47 1ygy_A PGDH, D-3-phosphoglycer 81.8 6 0.00021 38.4 9.5 72 186-275 454-526 (529)
48 2yln_A Putative ABC transporte 80.6 3.7 0.00013 35.3 6.9 90 5-112 170-261 (283)
49 2pyy_A Ionotropic glutamate re 79.6 6.8 0.00023 31.4 7.9 76 5-87 118-193 (228)
50 1lst_A Lysine, arginine, ornit 79.5 2.6 8.8E-05 34.6 5.3 43 5-47 117-161 (239)
51 2q88_A EHUB, putative ABC tran 79.0 3.1 0.00011 34.6 5.7 43 5-47 130-173 (257)
52 2ozz_A Hypothetical protein YH 78.8 11 0.00037 32.8 9.2 113 17-142 40-161 (231)
53 4ab5_A Transcriptional regulat 78.7 10 0.00035 30.1 8.6 115 17-149 33-163 (222)
54 2pvu_A ARTJ; basic amino acid 78.6 2.5 8.5E-05 35.9 5.0 44 5-48 153-197 (272)
55 3p96_A Phosphoserine phosphata 78.4 6.6 0.00022 36.3 8.2 35 188-222 14-48 (415)
56 2v25_A Major cell-binding fact 77.3 2.2 7.4E-05 35.4 4.2 43 5-47 154-200 (259)
57 3mtj_A Homoserine dehydrogenas 77.2 4.6 0.00016 38.6 6.8 68 186-268 357-426 (444)
58 2pfz_A Putative exported prote 76.3 39 0.0013 29.6 14.6 165 2-174 7-214 (301)
59 3del_B Arginine binding protei 75.8 13 0.00044 30.3 8.6 114 20-150 51-172 (242)
60 1wdn_A GLNBP, glutamine bindin 73.2 32 0.0011 27.1 10.9 114 20-149 42-163 (226)
61 3ho7_A OXYR; beta-alpha-barrel 73.2 28 0.00096 27.7 10.0 114 17-148 36-167 (232)
62 1tdj_A Biosynthetic threonine 73.0 4.8 0.00016 39.2 5.9 68 186-271 338-405 (514)
63 3kzg_A Arginine 3RD transport 72.9 7.1 0.00024 32.0 6.3 115 21-150 45-165 (237)
64 2f5x_A BUGD; periplasmic bindi 72.8 4.1 0.00014 36.8 5.0 43 6-48 147-193 (312)
65 3mpk_A Virulence sensor protei 72.6 35 0.0012 28.5 10.8 113 20-148 72-192 (267)
66 2pfy_A Putative exported prote 71.7 43 0.0015 29.3 11.5 150 3-160 9-200 (301)
67 1ii5_A SLR1257 protein; membra 71.6 5.7 0.00019 32.1 5.3 42 5-48 122-163 (233)
68 4go7_X Aspartokinase; transfer 71.0 10 0.00036 32.1 6.9 31 192-222 42-72 (200)
69 3i6v_A Periplasmic His/Glu/Gln 70.5 21 0.00071 29.2 8.7 112 20-148 45-157 (232)
70 2qpq_A Protein BUG27; alpha/be 70.2 8.1 0.00028 34.5 6.4 43 6-48 138-184 (301)
71 3tql_A Arginine-binding protei 70.2 24 0.00082 28.0 8.8 113 21-149 43-164 (227)
72 3s1t_A Aspartokinase; ACT doma 68.2 13 0.00045 30.7 6.9 59 192-266 23-82 (181)
73 4eq9_A ABC transporter substra 67.5 14 0.00049 29.9 7.0 88 5-112 121-219 (246)
74 2re1_A Aspartokinase, alpha an 66.1 6.9 0.00024 31.7 4.6 33 187-219 26-59 (167)
75 3onm_A Transcriptional regulat 65.1 53 0.0018 26.5 15.1 111 17-147 52-171 (238)
76 2pvu_A ARTJ; basic amino acid 64.7 49 0.0017 27.5 10.1 114 20-149 81-202 (272)
77 2hxr_A HTH-type transcriptiona 63.9 55 0.0019 26.2 14.4 122 17-148 55-185 (238)
78 4i62_A Amino acid ABC transpor 63.1 38 0.0013 27.7 8.9 114 20-149 82-204 (269)
79 3mah_A Aspartokinase; aspartat 62.8 7.1 0.00024 31.3 4.0 50 194-267 29-78 (157)
80 2dt9_A Aspartokinase; protein- 62.5 20 0.00069 28.8 6.8 28 193-220 24-51 (167)
81 4f3p_A Glutamine-binding perip 61.7 49 0.0017 27.0 9.3 114 20-149 63-184 (249)
82 3ix1_A N-formyl-4-amino-5-amin 61.7 46 0.0016 28.4 9.5 88 21-115 36-130 (302)
83 3qax_A Probable ABC transporte 61.2 35 0.0012 28.0 8.3 114 20-150 71-193 (268)
84 2y7p_A LYSR-type regulatory pr 60.9 43 0.0015 26.9 8.7 121 17-148 33-162 (218)
85 3qsl_A Putative exported prote 60.9 80 0.0027 27.1 11.2 113 21-143 66-194 (346)
86 3ksx_A Nitrate transport prote 60.6 83 0.0028 27.2 12.0 114 21-143 60-186 (324)
87 2vpn_A Periplasmic substrate b 60.6 88 0.003 27.5 13.8 167 2-174 7-217 (316)
88 2h9b_A HTH-type transcriptiona 59.7 81 0.0028 26.8 13.3 122 17-148 115-249 (312)
89 2dtj_A Aspartokinase; protein- 59.2 11 0.00037 30.9 4.6 27 193-219 23-49 (178)
90 1ixc_A CBNR, LYSR-type regulat 58.0 80 0.0027 26.2 16.3 121 17-147 116-247 (294)
91 3un6_A Hypothetical protein sa 57.8 96 0.0033 27.1 12.3 112 21-143 84-209 (341)
92 2iee_A ORF2, probable ABC tran 57.6 16 0.00054 30.8 5.6 90 5-112 138-230 (271)
93 3uif_A Sulfonate ABC transport 56.6 96 0.0033 27.1 10.9 115 21-145 46-175 (348)
94 3fzv_A Probable transcriptiona 55.9 53 0.0018 27.5 8.8 110 17-133 120-238 (306)
95 2re1_A Aspartokinase, alpha an 55.6 21 0.00073 28.7 5.8 33 186-218 105-138 (167)
96 3k4u_A Binding component of AB 55.5 24 0.00083 28.8 6.3 112 21-148 46-168 (245)
97 3h7m_A Sensor protein; histidi 54.8 77 0.0026 25.0 11.8 112 20-148 51-170 (234)
98 3tmg_A Glycine betaine, L-prol 53.3 1.1E+02 0.0038 26.4 14.0 131 21-157 46-198 (280)
99 2dtj_A Aspartokinase; protein- 52.8 26 0.00091 28.5 6.0 33 186-218 97-130 (178)
100 2ql3_A Probable transcriptiona 52.8 79 0.0027 24.5 12.3 118 17-144 30-156 (209)
101 3kbr_A Cyclohexadienyl dehydra 52.5 9.6 0.00033 31.0 3.2 114 21-150 56-180 (239)
102 2dt9_A Aspartokinase; protein- 52.4 28 0.00096 27.9 6.0 34 185-218 96-130 (167)
103 3oxn_A Putative transcriptiona 51.5 66 0.0023 25.8 8.4 121 17-149 44-173 (241)
104 2hpg_A ABC transporter, peripl 48.7 50 0.0017 29.4 7.7 153 2-160 15-220 (327)
105 2y7i_A STM4351; arginine-bindi 48.2 65 0.0022 25.5 7.7 113 21-149 47-166 (229)
106 2v25_A Major cell-binding fact 47.5 72 0.0025 25.7 8.0 115 21-149 83-206 (259)
107 2q88_A EHUB, putative ABC tran 46.9 31 0.001 28.3 5.6 113 21-149 54-179 (257)
108 3ab4_A Aspartokinase; aspartat 46.7 99 0.0034 28.7 9.6 128 118-267 193-331 (421)
109 2zzv_A ABC transporter, solute 45.9 1.6E+02 0.0056 26.2 11.0 125 3-133 41-210 (361)
110 2yjp_A Putative ABC transporte 45.8 62 0.0021 27.4 7.6 113 21-149 99-218 (291)
111 3hv1_A Polar amino acid ABC up 45.3 12 0.00041 31.3 2.8 113 21-149 62-188 (268)
112 4ddd_A Immunogenic protein; ss 45.1 27 0.00094 31.1 5.3 46 3-48 151-203 (327)
113 4dz1_A DALS D-alanine transpor 43.7 1.3E+02 0.0046 24.5 10.8 115 20-148 69-196 (259)
114 2esn_A Probable transcriptiona 43.7 1.4E+02 0.0049 24.9 11.7 117 18-149 127-259 (310)
115 1r9l_A Glycine betaine-binding 43.3 1.4E+02 0.0047 26.2 9.7 134 21-159 38-210 (309)
116 4gvo_A LMO2349 protein; struct 43.0 32 0.0011 28.3 5.1 87 6-112 125-219 (243)
117 1uth_A LYSR-type regulatory pr 43.0 1.5E+02 0.0052 25.0 12.1 120 18-148 131-259 (315)
118 2xwv_A Sialic acid-binding per 41.4 1.8E+02 0.0062 25.4 13.6 166 3-174 10-220 (312)
119 2yln_A Putative ABC transporte 40.7 93 0.0032 26.2 7.9 114 20-148 97-215 (283)
120 1sw5_A Osmoprotection protein 39.8 57 0.002 28.0 6.4 137 21-158 36-207 (275)
121 4esw_A Pyrimidine biosynthesis 39.4 84 0.0029 27.6 7.6 87 21-115 40-134 (342)
122 2vha_A Periplasmic binding tra 38.4 1.7E+02 0.0058 24.2 9.8 115 21-149 65-188 (287)
123 4eq9_A ABC transporter substra 38.1 66 0.0023 25.8 6.3 114 21-148 49-174 (246)
124 3tvi_A Aspartokinase; structur 37.8 1.1E+02 0.0038 28.8 8.5 101 146-269 253-363 (446)
125 3p96_A Phosphoserine phosphata 37.6 2.3E+02 0.0079 25.6 11.5 73 188-276 103-177 (415)
126 3qsl_A Putative exported prote 37.6 31 0.001 29.8 4.3 42 6-47 146-194 (346)
127 1xt8_A Putative amino-acid tra 37.0 1.8E+02 0.0061 24.2 9.1 114 20-149 87-207 (292)
128 3hn0_A Nitrate transport prote 36.3 36 0.0012 29.4 4.5 43 5-47 103-150 (283)
129 2dvz_A BUGE, putative exported 36.0 33 0.0011 30.7 4.3 43 6-48 151-197 (314)
130 2fyi_A HTH-type transcriptiona 35.9 1.6E+02 0.0055 23.2 12.6 121 17-147 39-169 (228)
131 3jv9_A OXYR, transcriptional r 35.8 1.5E+02 0.005 22.8 14.8 115 17-149 29-165 (219)
132 1tdj_A Biosynthetic threonine 35.1 39 0.0013 32.7 4.9 34 189-223 436-469 (514)
133 1zbm_A Hypothetical protein AF 34.5 44 0.0015 28.3 4.7 43 5-48 110-152 (280)
134 3cg4_A Response regulator rece 34.5 1.3E+02 0.0044 21.8 7.4 111 95-207 12-124 (142)
135 2x7q_A Ca3427, possible thiami 33.5 2.3E+02 0.0078 24.3 9.7 106 21-133 46-165 (321)
136 3fxq_A LYSR type regulator of 33.4 2.1E+02 0.0072 23.8 13.7 120 17-148 117-248 (305)
137 3l6g_A Betaine ABC transporter 32.7 2.3E+02 0.0078 24.0 13.8 131 21-157 32-181 (256)
138 3p7i_A PHND, subunit of alkylp 32.7 84 0.0029 27.8 6.5 57 23-88 160-222 (321)
139 3gzg_A Molybdate-binding perip 30.9 38 0.0013 29.0 3.7 44 5-49 144-192 (253)
140 2iee_A ORF2, probable ABC tran 30.8 94 0.0032 25.8 6.2 103 20-137 64-175 (271)
141 3n5l_A Binding protein compone 30.7 1.5E+02 0.0052 25.8 7.8 58 22-88 150-213 (310)
142 2x26_A Periplasmic aliphatic s 30.6 2.4E+02 0.0082 23.7 12.0 115 21-144 34-160 (308)
143 3dhx_A Methionine import ATP-b 30.6 73 0.0025 23.6 4.8 32 244-277 66-97 (106)
144 3l76_A Aspartokinase; alloster 29.9 84 0.0029 30.9 6.4 59 192-267 277-335 (600)
145 3lte_A Response regulator; str 29.7 57 0.002 23.5 4.1 39 95-133 11-49 (132)
146 3ksx_A Nitrate transport prote 29.2 61 0.0021 28.0 4.8 42 5-47 137-185 (324)
147 3r26_A Molybdate-binding perip 29.1 34 0.0012 28.6 3.0 44 5-49 128-176 (237)
148 1us5_A Putative GLUR0 ligand b 28.6 2.1E+02 0.0073 24.1 8.3 111 22-133 53-179 (314)
149 1us5_A Putative GLUR0 ligand b 27.8 53 0.0018 28.1 4.1 45 3-47 136-187 (314)
150 2a5s_A N-methyl-D-aspartate re 26.7 32 0.0011 29.3 2.4 40 7-47 170-213 (284)
151 3i42_A Response regulator rece 26.6 51 0.0017 23.7 3.3 78 96-176 9-87 (127)
152 3uif_A Sulfonate ABC transport 26.3 43 0.0015 29.5 3.3 42 5-47 125-173 (348)
153 2h98_A HTH-type transcriptiona 24.7 3.2E+02 0.011 23.1 15.4 121 17-147 115-248 (313)
154 3s1t_A Aspartokinase; ACT doma 24.7 63 0.0022 26.4 3.8 34 185-218 97-131 (181)
155 2qrr_A Methionine import ATP-b 23.7 1.2E+02 0.004 22.1 4.8 31 244-276 68-98 (101)
156 3kht_A Response regulator; PSI 23.3 91 0.0031 22.9 4.3 79 96-176 11-91 (144)
157 3eod_A Protein HNR; response r 23.2 1E+02 0.0035 22.0 4.4 80 93-176 10-89 (130)
158 2b4a_A BH3024; flavodoxin-like 22.6 2.1E+02 0.0072 20.5 6.3 80 93-176 18-99 (138)
159 3grc_A Sensor protein, kinase; 22.4 53 0.0018 24.0 2.7 78 95-175 11-89 (140)
160 3l76_A Aspartokinase; alloster 22.4 1E+02 0.0035 30.2 5.4 38 186-223 444-482 (600)
161 3hn0_A Nitrate transport prote 22.3 69 0.0023 27.6 3.8 113 21-145 35-153 (283)
162 3hdv_A Response regulator; PSI 22.2 83 0.0029 22.7 3.8 82 93-176 10-91 (136)
163 2cdq_A Aspartokinase; aspartat 22.1 1.5E+02 0.005 28.5 6.3 99 148-267 300-410 (510)
164 1h45_A Lactoferrin; metal tran 22.0 88 0.003 28.4 4.5 29 19-47 33-61 (334)
165 2rc8_A Glutamate [NMDA] recept 22.0 58 0.002 27.8 3.2 74 5-87 176-259 (294)
166 3gl9_A Response regulator; bet 21.7 61 0.0021 23.3 2.9 77 96-175 8-85 (122)
167 1iej_A Ovotransferrin; iron, m 21.5 4.4E+02 0.015 23.6 10.0 115 95-212 10-137 (332)
168 2c0n_A A197; thermophil protei 21.3 43 0.0015 28.5 2.1 37 241-282 54-93 (203)
169 1i6a_A OXYR, hydrogen peroxide 21.3 1.4E+02 0.0047 23.4 5.2 31 17-47 30-61 (219)
170 3ced_A Methionine import ATP-b 21.2 1.4E+02 0.0047 21.8 4.7 32 244-276 65-96 (98)
171 4ddd_A Immunogenic protein; ss 21.2 2.5E+02 0.0086 24.6 7.4 111 21-134 68-195 (327)
172 2qsw_A Methionine import ATP-b 21.1 1.1E+02 0.0039 22.1 4.3 31 244-276 68-98 (100)
173 3h1g_A Chemotaxis protein CHEY 21.1 87 0.003 22.6 3.7 78 96-175 11-90 (129)
174 1h45_A Lactoferrin; metal tran 20.0 4.6E+02 0.016 23.5 8.9 68 92-161 6-84 (334)
No 1
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=9e-93 Score=650.84 Aligned_cols=263 Identities=48% Similarity=0.730 Sum_probs=252.0
Q ss_pred CccCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeee
Q 023305 1 MMQGLPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANF 80 (284)
Q Consensus 1 aylGp~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~ 80 (284)
|||||+|||||+||+++| +++||+||++||++|++|++||||||||||++|+|.+|+|+|.+++++|+||+.+||+|
T Consensus 10 aylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l~I~h 86 (283)
T 2qmx_A 10 AYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFVKVEH 86 (283)
T ss_dssp EEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEEECCC
T ss_pred EEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEEeeee
Confidence 699999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecCCCCcCCccEEEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccc
Q 023305 81 CLLALPGIKADQLKRVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRI 159 (284)
Q Consensus 81 ~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I 159 (284)
||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||++|+++++++.|||||+.||++|||+||+++|
T Consensus 87 ~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~il~~~I 166 (283)
T 2qmx_A 87 CLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENL 166 (283)
T ss_dssp EEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEEEESSC
T ss_pred eEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCceecccC
Confidence 999999999999999999999999999999997 8999999999999999999877889999999999999999999999
Q ss_pred cCCCCCeeEEEEEeeCCCC--------CCCCCCceEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCcccc
Q 023305 160 QDEPDNITRFLVLARDPII--------PRTDKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVD 231 (284)
Q Consensus 160 ~d~~~N~TRF~vl~~~~~~--------~~~~~~~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~ 231 (284)
||.++|+|||+||++++.. + ..+.+||||+|+++|+||+|+++|++|+.+|||||||||||+++.+
T Consensus 167 ~D~~~N~TRF~vl~~~~~~~~~~~~~~~-~~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~----- 240 (283)
T 2qmx_A 167 ADEEWNITRFFCIAHENNPDISHLKVRP-DVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA----- 240 (283)
T ss_dssp SSCCCCEEEEEEEEETTCCCCTTSSSCC-EEEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSST-----
T ss_pred cCCCCCeeeEEEEecCccccccccccCC-CCCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCC-----
Confidence 9999999999999998644 2 2235799999999999999999999999999999999999999874
Q ss_pred CCCCCCCccceeEEEEEeecCCCcHHHHHHHHHHHhcCCceEEEceeeCC
Q 023305 232 DSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMD 281 (284)
Q Consensus 232 ~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L~~~~~~vkvLGsYp~~ 281 (284)
|+|.||||++||.+|++++++|++|++.+.++|+|||||+.
T Consensus 241 ---------~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~ 281 (283)
T 2qmx_A 241 ---------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGVV 281 (283)
T ss_dssp ---------TEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred ---------cceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEEeeeeeCC
Confidence 99999999999999999999999999999999999999974
No 2
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=100.00 E-value=8.2e-92 Score=651.90 Aligned_cols=268 Identities=30% Similarity=0.475 Sum_probs=253.8
Q ss_pred CccCCCCcHHHHHHHhhCC--CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccC-CeEEEEEEEEe
Q 023305 1 MMQGLPGSFSEDAALKAYP--KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRH-RLHIVGEVQLA 77 (284)
Q Consensus 1 aylGp~GtfS~~Aa~~~f~--~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~-~l~I~~E~~l~ 77 (284)
|||||+|||||+||+++|+ +.+++||+||++||++|++|++||||||||||++|+|.+|+|+|.++ +++|+||+++|
T Consensus 10 aylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~IvgE~~l~ 89 (313)
T 3mwb_A 10 TFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIREALVP 89 (313)
T ss_dssp EEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEEEEEEE
T ss_pred EEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEEEEEEe
Confidence 6999999999999999984 47899999999999999999999999999999999999999999985 79999999999
Q ss_pred eeeEeeecCCCCcCCccEEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcC-Cce
Q 023305 78 ANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYG-LNI 154 (284)
Q Consensus 78 I~~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~yg-L~i 154 (284)
|+|||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||++|+++++++.|||||+.||++|| |+|
T Consensus 90 I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIas~~AA~~Yg~L~i 169 (313)
T 3mwb_A 90 ITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNV 169 (313)
T ss_dssp CCCEEEECTTCCGGGCSEEEECHHHHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTSTTCSCSEEEECHHHHHHCTTCEE
T ss_pred eeEEEEcCCCCCcccCcEEEEEhHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHhCCCCCccccCcHHHHHHcCChhh
Confidence 999999999999999999999999999999999986 68999999999999999988766889999999999999 999
Q ss_pred eeccccCCCCCeeEEEEEeeCCCCCCCCCCceEEEEEEec-CCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCC
Q 023305 155 LADRIQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTLD-EGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDS 233 (284)
Q Consensus 155 l~~~I~d~~~N~TRF~vl~~~~~~~~~~~~~ktsi~f~~~-~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~ 233 (284)
|+++|||.++|+|||+||+++...+...+.+||||+|+++ |+||+|+++|++|+.+|||||||||||+++.+
T Consensus 170 l~~~I~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~------- 242 (313)
T 3mwb_A 170 LAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL------- 242 (313)
T ss_dssp EESCCCSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST-------
T ss_pred hhhcccCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCC-------
Confidence 9999999999999999999987544445678999999997 99999999999999999999999999999874
Q ss_pred CCCCCccceeEEEEEeecCCCcHHHHHHHHHHHhcCCceEEEceeeCCC
Q 023305 234 NNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDA 282 (284)
Q Consensus 234 ~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L~~~~~~vkvLGsYp~~~ 282 (284)
|+|+||||++||.+|++++++|++|++.+.++|+|||||+..
T Consensus 243 -------~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~ 284 (313)
T 3mwb_A 243 -------GHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARAD 284 (313)
T ss_dssp -------TSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCEEEEEEECTT
T ss_pred -------ccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEEEEeeeecCc
Confidence 999999999999999999999999999999999999999853
No 3
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=100.00 E-value=1.1e-90 Score=632.02 Aligned_cols=256 Identities=28% Similarity=0.398 Sum_probs=246.3
Q ss_pred CccCCCCcHHHHHHHhhCCCCc--eeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEee
Q 023305 1 MMQGLPGSFSEDAALKAYPKCE--TVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAA 78 (284)
Q Consensus 1 aylGp~GtfS~~Aa~~~f~~~~--~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I 78 (284)
|||||+|||||+||+++|++.+ ++||+||++||++|++|++||||||||||++|+|.+|+|+|.+++++|+||+.+||
T Consensus 7 aylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l~I 86 (267)
T 2qmw_A 7 YYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGEIRLDI 86 (267)
T ss_dssp EEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEEEEEEC
T ss_pred EEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhcCCcEEEEEEEEEe
Confidence 6999999999999999998754 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeeecCCCCcCCccEEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeecc
Q 023305 79 NFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADR 158 (284)
Q Consensus 79 ~~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~ 158 (284)
+|||++++|.++++|++||||||||+||++||++++++.+++.|||+||+++++ + .|||||+.||++|||+||+++
T Consensus 87 ~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~p~~~~~~~~sTA~AA~~v~~---~-~AAIas~~AA~~ygL~il~~~ 162 (267)
T 2qmw_A 87 NFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIEN---G-VAAIAPLGSGEAYGFTPIDTH 162 (267)
T ss_dssp CEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCBT---T-EEEEEETTTSGGGTCCEEEEC
T ss_pred eeEEEecCCCCHhhCCEEEEEhHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHcC---C-CcEECCHHHHHHCCCcEeecc
Confidence 999999999999999999999999999999999988999999999999999996 3 899999999999999999999
Q ss_pred ccCCCCCeeEEEEEeeCCCCCCCCCCceEEEEEEe---cCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCC
Q 023305 159 IQDEPDNITRFLVLARDPIIPRTDKLFKTSIVFTL---DEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNN 235 (284)
Q Consensus 159 I~d~~~N~TRF~vl~~~~~~~~~~~~~ktsi~f~~---~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~ 235 (284)
|||.++|+|||+||++++ ++ + .+||||+|++ +|+||+|+++|++|+.+|||||||||||+++++
T Consensus 163 I~D~~~N~TRF~vl~~~~-~~--~-~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~--------- 229 (267)
T 2qmw_A 163 IEDYPHNVTRFLVIKNQQ-QF--D-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL--------- 229 (267)
T ss_dssp CCSCSCCEEEEEEEESCC-CC--C-SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST---------
T ss_pred ccCCCCCceEEEEEecCC-CC--C-CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCC---------
Confidence 999999999999999987 33 3 6799999999 899999999999999999999999999999874
Q ss_pred CCCccceeEEEEEeecCCCcHHHHHHHHHHHhcCCceEEEceee
Q 023305 236 GTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYP 279 (284)
Q Consensus 236 g~~~~~~y~F~id~eg~~~d~~~~~al~~L~~~~~~vkvLGsYp 279 (284)
|+|.||||++ |.+|++++++|++|++.+.++|+|||||
T Consensus 230 -----~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~kiLGsY~ 267 (267)
T 2qmw_A 230 -----GMYRFFVQAD-SAITTDIKKVIAILETLDFKVEMIGAFN 267 (267)
T ss_dssp -----TCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred -----ccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEEEeeeC
Confidence 9999999999 9999999999999999999999999997
No 4
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=100.00 E-value=3.5e-88 Score=631.37 Aligned_cols=263 Identities=24% Similarity=0.367 Sum_probs=243.5
Q ss_pred CccCCCCcHHHHHHHhhC--------CCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccC-CeEEE
Q 023305 1 MMQGLPGSFSEDAALKAY--------PKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRH-RLHIV 71 (284)
Q Consensus 1 aylGp~GtfS~~Aa~~~f--------~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~-~l~I~ 71 (284)
|||||+|||||+||+++| ++.+++||+||++||++|++|+ ||||||||||++|+|.+|+|+|.++ +++|+
T Consensus 10 aylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL~~~~~l~I~ 88 (329)
T 3luy_A 10 FYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDALIDAKDLVGF 88 (329)
T ss_dssp EEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHHHTCSSCEEE
T ss_pred EEECCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHhhccCCcEEE
Confidence 699999999999999975 3578999999999999999999 9999999999999999999999875 89999
Q ss_pred EEEEEeeeeEeeecCCCCcCCccEEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcC
Q 023305 72 GEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYG 151 (284)
Q Consensus 72 ~E~~l~I~~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~yg 151 (284)
||+++||+|||++++|.++++|++||||||||+||++||++++++.+++.|||+||++++. +.|||||+.||++||
T Consensus 89 gE~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~~~~v~~~STA~AA~~v~~----~~AAIas~~AAelYg 164 (329)
T 3luy_A 89 ARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEHRLSTQPATSNAAACRDLIP----GEIAFGPAICGELYD 164 (329)
T ss_dssp EEEEEECCCEEEEETTCCGGGCCEEEECHHHHHHTHHHHHHTTCEEEECSSHHHHHHTCCT----TEEEEECTTHHHHSS
T ss_pred EEEEEEeeeeeecCCCCCcccCcEEEEcHHHHHHHHHHHHHcCCeEEeccCHHHHHHHhCC----CCceeCCHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999998763 579999999999999
Q ss_pred CceeeccccCCCCCeeEEEEEeeCCCC------CC-CCCCceEEEEEEec--CCCchHHHHHHHHHhCCceeeeeeeeeC
Q 023305 152 LNILADRIQDEPDNITRFLVLARDPII------PR-TDKLFKTSIVFTLD--EGPGVLFKALAVFALREINLTKIESRPQ 222 (284)
Q Consensus 152 L~il~~~I~d~~~N~TRF~vl~~~~~~------~~-~~~~~ktsi~f~~~--~~pGaL~~~L~~F~~~~INLt~IeSRP~ 222 (284)
|+||+++|||.++|+|||+||+|++.. +. ..+.+|||++|.++ |+||+|+++|++|+.+|||||||||||+
T Consensus 165 L~iLa~~I~D~~~N~TRFlvl~~~~~~~~~~~~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~ 244 (329)
T 3luy_A 165 ITRIGTAIQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPI 244 (329)
T ss_dssp EEEEESSCCSCSCCEEEEEEEECHHHHHHHTHHHHHTTCCCEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CccccccccCCCcceeEEEEEeccccccccccCCCCCCCCCceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeEC
Confidence 999999999999999999999987532 11 11336888888776 5899999999999999999999999999
Q ss_pred CCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHHHhcCCceEEEceeeCCC
Q 023305 223 RKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFATFLRVLGCYPMDA 282 (284)
Q Consensus 223 ~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L~~~~~~vkvLGsYp~~~ 282 (284)
++++ |+|+||||++||.+|++++++|++|++.+.++|+|||||+..
T Consensus 245 ~~~~--------------~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~kiLGsYp~~~ 290 (329)
T 3luy_A 245 KGRT--------------GTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTLAVYPRRE 290 (329)
T ss_dssp TTEE--------------EEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEEEEEEECCC
T ss_pred CCCC--------------ccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEEEeeccCCC
Confidence 9864 999999999999999999999999999999999999999864
No 5
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=99.85 E-value=1.1e-21 Score=187.20 Aligned_cols=81 Identities=30% Similarity=0.432 Sum_probs=77.4
Q ss_pred CCCceEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHH
Q 023305 182 DKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNA 261 (284)
Q Consensus 182 ~~~~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~a 261 (284)
++.+||||+|+++|+||+|+++|++|+.+|||||||||||+++.+ |+|.|||||+ |.+|++++++
T Consensus 30 tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~--------------~eY~FfVD~e-h~~d~~v~~A 94 (429)
T 1phz_A 30 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK--------------DEYEFFTYLD-KRTKPVLGSI 94 (429)
T ss_dssp CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCT--------------TEEEEEECBC-GGGHHHHHHH
T ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCC--------------ccEEEEEEEe-eCCCHHHHHH
Confidence 456799999999999999999999999999999999999999874 9999999999 9999999999
Q ss_pred HHHHHhc-CCceEEEce
Q 023305 262 LGHLQEF-ATFLRVLGC 277 (284)
Q Consensus 262 l~~L~~~-~~~vkvLGs 277 (284)
|++|++. +.++|+||+
T Consensus 95 L~eL~~~~~~~vkiLGs 111 (429)
T 1phz_A 95 IKSLRNDIGATVHELSR 111 (429)
T ss_dssp HHHHHHTTCCCEEEEET
T ss_pred HHHHHhhccceEEECCC
Confidence 9999999 999999999
No 6
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.32 E-value=0.0016 Score=47.46 Aligned_cols=68 Identities=13% Similarity=0.166 Sum_probs=49.9
Q ss_pred ceEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHH
Q 023305 185 FKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGH 264 (284)
Q Consensus 185 ~ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~ 264 (284)
..+.|.+..+|+||.|.++.+.|+.+|+|+..+...+... . ....|-+++. +...+.++++.
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~-~--------------~~~~i~v~~~---~~~~l~~l~~~ 65 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG-I--------------FTCNLMIFVK---NTDKLTTLMDK 65 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS-E--------------EEEEEEEEES---SHHHHHHHHHH
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC-E--------------EEEEEEEEEC---CHHHHHHHHHH
Confidence 3567778889999999999999999999999999877431 1 2233333432 34677888998
Q ss_pred HHhcCC
Q 023305 265 LQEFAT 270 (284)
Q Consensus 265 L~~~~~ 270 (284)
|++...
T Consensus 66 L~~~~~ 71 (88)
T 2ko1_A 66 LRKVQG 71 (88)
T ss_dssp HTTCTT
T ss_pred HhcCCC
Confidence 886543
No 7
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.13 E-value=0.0039 Score=45.91 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=33.3
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCC
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQR 223 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~ 223 (284)
+..|.+..+|+||.|.++.+.|+.+|+|+..+......
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~ 42 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD 42 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc
Confidence 45677788999999999999999999999999887643
No 8
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=96.99 E-value=0.0056 Score=51.20 Aligned_cols=68 Identities=13% Similarity=0.224 Sum_probs=52.0
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 265 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L 265 (284)
+-.|.+.+.|+||.|.++.+.|+.+|+|+..+...|.... ......+-+++ ++..+.++.++|
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~---------------~~sriti~V~~--d~~~leqI~kqL 65 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDP---------------TLSRMTIQTVG--DEKVLEQIEKQL 65 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCS---------------SEEEEEEEEES--CHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCC---------------CEEEEEEEEec--cHHHHHHHHHHH
Confidence 3456677789999999999999999999999999997532 23444455554 357888888888
Q ss_pred HhcCC
Q 023305 266 QEFAT 270 (284)
Q Consensus 266 ~~~~~ 270 (284)
++.-.
T Consensus 66 ~Kl~d 70 (164)
T 2f1f_A 66 HKLVD 70 (164)
T ss_dssp HHSTT
T ss_pred cCCCC
Confidence 87644
No 9
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=96.84 E-value=0.0078 Score=50.40 Aligned_cols=68 Identities=13% Similarity=0.226 Sum_probs=51.7
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 265 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L 265 (284)
|-.|.+.+.|+||.|.++.+.|+++|+|+..+...|.... .-..+-+-+++ ++..+.++.++|
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~---------------g~sritivV~~--d~~~leql~kQL 66 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDP---------------TLSRMTLVTNG--PDEIVEQITKQL 66 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSST---------------TEEEEEEEEEE--CHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCC---------------CEEEEEEEEec--cHHHHHHHHHHh
Confidence 4567777889999999999999999999999999987632 12334444445 357788888888
Q ss_pred HhcCC
Q 023305 266 QEFAT 270 (284)
Q Consensus 266 ~~~~~ 270 (284)
.+.-.
T Consensus 67 ~Kl~d 71 (165)
T 2pc6_A 67 NKLIE 71 (165)
T ss_dssp HHSTT
T ss_pred cCCCC
Confidence 87644
No 10
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=96.69 E-value=0.011 Score=50.69 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=52.6
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 265 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L 265 (284)
+-.|.+.+.|+||.|.++.+.|++||+|+..+-.-|.... .-..+.|-+++. +..+.++.++|
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~---------------gisRitIvV~g~--e~~ieqL~kQL 91 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETP---------------GLSRLVIMVKGD--DKTIEQIEKQA 91 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSST---------------TEEEEEEEEEEC--TTHHHHHHHHH
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCC---------------CEEEEEEEEECC--HHHHHHHHHHh
Confidence 4467777889999999999999999999999999887542 223444444553 56777888888
Q ss_pred HhcCCceEE
Q 023305 266 QEFATFLRV 274 (284)
Q Consensus 266 ~~~~~~vkv 274 (284)
.+.-.=+++
T Consensus 92 ~KLidVikV 100 (193)
T 2fgc_A 92 YKLVEVVKV 100 (193)
T ss_dssp TTSTTEEEE
T ss_pred cCcCceEEE
Confidence 775444443
No 11
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=94.75 E-value=0.056 Score=47.16 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=44.5
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 265 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L 265 (284)
..+|.+...|+||.|.+++++++++++|+..+..+..+..+. ......+||++.. .+++++++|
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~------------ng~A~I~IEV~d~----~Le~LL~kL 67 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEH------------EGKALIYFEIEGG----DFEKILERV 67 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTT------------TTEEEEEEEECSS----CHHHHHHHH
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCc------------CCEEEEEEEECCC----CHHHHHHHH
Confidence 467888899999999999999999999999999876542100 0122333777543 566777887
Q ss_pred Hhc
Q 023305 266 QEF 268 (284)
Q Consensus 266 ~~~ 268 (284)
++.
T Consensus 68 rkI 70 (223)
T 1y7p_A 68 KTF 70 (223)
T ss_dssp HTC
T ss_pred hCC
Confidence 754
No 12
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=94.30 E-value=0.2 Score=39.85 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.0
Q ss_pred EEEE-EEecCCCchHHHHHHHHHhCCceeeeeeeee
Q 023305 187 TSIV-FTLDEGPGVLFKALAVFALREINLTKIESRP 221 (284)
Q Consensus 187 tsi~-f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP 221 (284)
++++ +.++|+||.|.++++.++++|||+..+.+.+
T Consensus 72 ~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~ 107 (144)
T 2f06_A 72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA 107 (144)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc
Confidence 4544 4789999999999999999999998877765
No 13
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=94.30 E-value=0.29 Score=39.51 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=48.7
Q ss_pred EEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHHHhc
Q 023305 189 IVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEF 268 (284)
Q Consensus 189 i~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L~~~ 268 (284)
|-+...|++|.|.+++++++.+++|+..++.+|. . + .|+.++. .+...+..+...+++.
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~--g-----------------~-i~~~~~~-~~~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI--G-----------------R-IYLNFAE-LEFESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT--T-----------------E-EEEEECC-CCHHHHHHHHHHHHHS
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC--C-----------------E-EEEEEEe-CCHHHHHHHHHHHHcC
Confidence 5566789999999999999999999999999875 1 2 6677764 3456677788888776
Q ss_pred CCc
Q 023305 269 ATF 271 (284)
Q Consensus 269 ~~~ 271 (284)
...
T Consensus 62 ~~~ 64 (190)
T 2jhe_A 62 AGV 64 (190)
T ss_dssp TTE
T ss_pred CCe
Confidence 553
No 14
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=93.88 E-value=0.49 Score=38.44 Aligned_cols=92 Identities=13% Similarity=0.037 Sum_probs=62.3
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeee
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLA 84 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~ 84 (284)
+.|+..+....+.+++.+++.+.+..+++++|.+|++|.++.+-.. ... ........++.+.+....+...+++.
T Consensus 115 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~-~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~ 189 (226)
T 1wdn_A 115 KSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPN-ILY----FIKTAGNGQFKAVGDSLEAQQYGIAF 189 (226)
T ss_dssp ETTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHH-HHH----HHHTTTTTTEEEEEEEEEEEEEEEEE
T ss_pred EcCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHH-HHH----HHHhCCCCceEEecCCcccCceEEEE
Confidence 4677777777777778889999999999999999999998876321 110 01111113577777666666677776
Q ss_pred cCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 85 LPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 85 ~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
+++ +|+-..+..++|.+
T Consensus 190 ~k~-----------~~~l~~~~~~~l~~ 206 (226)
T 1wdn_A 190 PKG-----------SDELRDKVNGALKT 206 (226)
T ss_dssp CTT-----------CHHHHHHHHHHHHH
T ss_pred eCC-----------CHHHHHHHHHHHHH
Confidence 654 46666666677665
No 15
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.71 E-value=0.88 Score=37.90 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=30.9
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeee
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRP 221 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP 221 (284)
.+.|.+..+|+||.|+++.+.|+.+|+|+..+...-
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t 128 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT 128 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhc
Confidence 455666779999999999999999999999887764
No 16
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=93.40 E-value=0.46 Score=38.96 Aligned_cols=92 Identities=14% Similarity=-0.014 Sum_probs=62.5
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeee
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLA 84 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~ 84 (284)
+.|+..+....+..++.+++..++.++++++|.+|++|+.+..-. .+. ..+......++.+.+....+...+++.
T Consensus 123 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (234)
T 3h7m_A 123 HRDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMV---PGM--YIIRENRLTNLVPVARSIAAQRYGYAV 197 (234)
T ss_dssp ETTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHH---HHH--HHHHHTTCTTEEEEEEEEEEEEEEEEE
T ss_pred EeCchHHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccH---HHH--HHHHhcCCCceEEeccccCCCceEEEE
Confidence 356666666666666678999999999999999999999887522 110 011111113578888777777777776
Q ss_pred cCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 85 LPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 85 ~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
+++ +|+-..+..++|.+
T Consensus 198 ~~~-----------~~~l~~~l~~~l~~ 214 (234)
T 3h7m_A 198 RQG-----------DAELLARFSEGLAI 214 (234)
T ss_dssp ETT-----------CHHHHHHHHHHHHH
T ss_pred eCC-----------CHHHHHHHHHHHHH
Confidence 654 56666777777765
No 17
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=93.07 E-value=0.42 Score=37.91 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.8
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCceeeeeeeee
Q 023305 187 TSIVFTLDEGPGVLFKALAVFALREINLTKIESRP 221 (284)
Q Consensus 187 tsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP 221 (284)
-.|.+.++|+||.|.++.+.|+++|||+..|.--+
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 34566789999999999999999999999886544
No 18
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=92.91 E-value=0.66 Score=38.88 Aligned_cols=78 Identities=14% Similarity=0.051 Sum_probs=56.6
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeee
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLA 84 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~ 84 (284)
..|+..+....+.+++.+++..++.++++++|.+|++|+.+..-.. . ...+......++.+.++...+...+++.
T Consensus 136 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~-~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 210 (249)
T 4f3p_A 136 KTGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPN-V----LFFVNNEGKGRVKVAGAPVSGDKYGIGF 210 (249)
T ss_dssp ETTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHH-H----HHHHHTTTTTTEEEEEEEEEEEEEEEEE
T ss_pred eCCChHHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHH-H----HHHHHhCCCCceEEecCCCCCccEEEEE
Confidence 4677777777777888899999999999999999999999886331 0 1111111124588888888888888877
Q ss_pred cCC
Q 023305 85 LPG 87 (284)
Q Consensus 85 ~~~ 87 (284)
+++
T Consensus 211 ~k~ 213 (249)
T 4f3p_A 211 PKG 213 (249)
T ss_dssp ETT
T ss_pred cCC
Confidence 765
No 19
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=92.70 E-value=0.28 Score=42.04 Aligned_cols=92 Identities=20% Similarity=0.223 Sum_probs=63.9
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEE-eeeeEee
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL-AANFCLL 83 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l-~I~~~L~ 83 (284)
+.|+..+....+.+++.+++.+++.++++++|.+|++|+++..-. .....+ .-....++.+.+.... +...+++
T Consensus 145 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~-~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~ 219 (267)
T 3mpk_A 145 VRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQI-SASYYV----NRYFAGKLRIASALDLPPAEIALA 219 (267)
T ss_dssp ETTCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHH-HHHHHH----HHHCTTTEEEEEECSSCCEEEEEE
T ss_pred eCCchhHHHHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHH-HHHHHH----HhcCCCceEEEeccCCCceeEEEE
Confidence 357776766777788899999999999999999999999988622 111111 1111245888877553 5666676
Q ss_pred ecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 84 ALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 84 ~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
.+++ +|+-..+..++|.+
T Consensus 220 ~~k~-----------~~~l~~~ln~~l~~ 237 (267)
T 3mpk_A 220 TTRG-----------QTELMSILNKALYS 237 (267)
T ss_dssp EETT-----------CHHHHHHHHHHHHT
T ss_pred EcCC-----------CHHHHHHHHHHHHh
Confidence 6654 67777777777765
No 20
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=92.50 E-value=0.21 Score=41.87 Aligned_cols=92 Identities=15% Similarity=0.025 Sum_probs=61.8
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeee
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLA 84 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~ 84 (284)
+.|+..+....+.+++.+++++++.++++++|.+|++|+.+..-. .... .+.......+.+.++...+...+++.
T Consensus 121 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (245)
T 3k4u_A 121 KFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLP-FNVA----FMAQKGQGYLVHLDTSLTYEPLGWAI 195 (245)
T ss_dssp ETTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHH-HHHH----HHHHTTTTTEEEECCCCSCEEECCEE
T ss_pred eCCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHH-HHHH----HHhcCCccceeecCCCcccccEEEEE
Confidence 468888888888888899999999999999999999999888622 1110 01111123455555554455666666
Q ss_pred cCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 85 LPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 85 ~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
+++ +|+-..+..++|.+
T Consensus 196 ~k~-----------~~~l~~~ln~~l~~ 212 (245)
T 3k4u_A 196 KKG-----------DPDFLNWLNHFLAQ 212 (245)
T ss_dssp CTT-----------CHHHHHHHHHHHHH
T ss_pred cCC-----------CHHHHHHHHHHHHH
Confidence 654 56666777777765
No 21
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=92.50 E-value=0.37 Score=40.09 Aligned_cols=95 Identities=9% Similarity=0.154 Sum_probs=61.4
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccc---cCCeEEEEEEE-Eeeee
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RHRLHIVGEVQ-LAANF 80 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~---~~~l~I~~E~~-l~I~~ 80 (284)
+.|+..+....+.+++.+++.+++.++++++|.+|++|..+..-. .....+.. ...+. ..++.+.+... .+...
T Consensus 116 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~-~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~ 193 (237)
T 3kzg_A 116 RKGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYE-AAKYWMAS-EPYAYKLIGKKYKLIGKKISIGEGY 193 (237)
T ss_dssp ETTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEHH-HHHHHHTT-SSTTHHHHCCSEEEEEEEEECTTCB
T ss_pred ecCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcH-HHHHHHHh-CCccccccCCceEEecCccccCccE
Confidence 356665555666777889999999999999999999999887632 11111110 00000 22678887754 55555
Q ss_pred EeeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 81 CLLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 81 ~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
+++.+++ +|+-..+..++|.+
T Consensus 194 ~~~~~k~-----------~~~l~~~l~~~l~~ 214 (237)
T 3kzg_A 194 SIMANPD-----------QFVLIKKINKILLE 214 (237)
T ss_dssp CCEECGG-----------GHHHHHHHHHHHHH
T ss_pred EEEEcCC-----------CHHHHHHHHHHHHH
Confidence 6655543 57777777777765
No 22
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=91.44 E-value=1 Score=38.88 Aligned_cols=88 Identities=13% Similarity=0.038 Sum_probs=61.4
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeecccc-cccc-CCeEEEEEEEEeeee-E
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD-LLLR-HRLHIVGEVQLAANF-C 81 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d-~L~~-~~l~I~~E~~l~I~~-~ 81 (284)
+.|+..+....+.+++.+++.+.+.++++++|.+|++|+++..-. ++. ++.+ .++.+.+...-+..+ +
T Consensus 159 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~ 229 (292)
T 1xt8_A 159 NKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNT---------LLFAWVKDHPDFKMGIKELGNKDVIA 229 (292)
T ss_dssp ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHCTTEEEEEEEEEEEEEEC
T ss_pred eCCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecHH---------HHHHHHHhCCCeEEcccccccCceeE
Confidence 568888877777788888999999999999999999999887522 111 1111 237777765555555 5
Q ss_pred eeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 82 LLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 82 L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
++.+++ +|+-..+..++|.+
T Consensus 230 ~~~~k~-----------~~~l~~~l~~~l~~ 249 (292)
T 1xt8_A 230 PAVKKG-----------DKELKEFIDNLIIK 249 (292)
T ss_dssp CEEETT-----------CHHHHHHHHHHHHH
T ss_pred EEEeCC-----------CHHHHHHHHHHHHH
Confidence 655543 56666777777765
No 23
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=90.29 E-value=1.3 Score=36.68 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=59.1
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeecccc-cccc-CCeEEEEEEEEeee---
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD-LLLR-HRLHIVGEVQLAAN--- 79 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d-~L~~-~~l~I~~E~~l~I~--- 79 (284)
+.|+..+....+ +++.+++.+++.++++++|.+|++|+++..-. ++. ++.+ ..+.+.+....+..
T Consensus 124 ~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (242)
T 3del_B 124 QTGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPS---------IAQVVLKDFPALSTATIDLPEDQWVL 193 (242)
T ss_dssp ETTSHHHHHHHH-STTCCEEEESSHHHHHHHHHTTSSSEEEECHH---------HHHHHGGGCTTEEEEEEECCGGGCEE
T ss_pred EcCcHHHHHHHh-CCCceEEEECCHHHHHHHHHcCCCCEEEecHH---------HHHHHHHhCCCeEEecCccCcccccc
Confidence 467777777666 77889999999999999999999999887632 111 1122 23677665444443
Q ss_pred -eEeeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 80 -FCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 80 -~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
.+++.+++ +|+-..+..++|.+
T Consensus 194 ~~~~~~~k~-----------~~~l~~~l~~~l~~ 216 (242)
T 3del_B 194 GYGIGVASD-----------RPALALKIEAAVQE 216 (242)
T ss_dssp EEEEEEETT-----------CHHHHHHHHHHHHH
T ss_pred eEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 55655543 56667777777765
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=89.97 E-value=1.1 Score=37.54 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=30.6
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeee
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESR 220 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSR 220 (284)
++.|.+.-+|+||-++++-+.|+.+|+|+..+...
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee
Confidence 45566667999999999999999999999988776
No 25
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=89.82 E-value=2 Score=38.75 Aligned_cols=67 Identities=6% Similarity=0.121 Sum_probs=47.5
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecC-----CCcHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEAS-----MADPRAQN 260 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~-----~~d~~~~~ 260 (284)
+..|.+.-+|+||-..++-+.++.+|+|+..+...-.... +.|.+-++++.. .+...+++
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~~~~L~~ 74 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLS---------------ARFFVRCVFHATDDADALRVDALRR 74 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTT---------------TEEEEEEEEEECC----CCHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCC---------------CceEEEEEEEccCcccCCCHHHHHH
Confidence 4456677799999999999999999999999988832222 234444565543 23467777
Q ss_pred HHHHHHh
Q 023305 261 ALGHLQE 267 (284)
Q Consensus 261 al~~L~~ 267 (284)
.++.+.+
T Consensus 75 ~f~~la~ 81 (292)
T 3lou_A 75 EFEPIAE 81 (292)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 26
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=88.90 E-value=1.9 Score=36.08 Aligned_cols=87 Identities=16% Similarity=0.076 Sum_probs=58.8
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeecccc-cccc-CCeEEEEEEEEeee---
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD-LLLR-HRLHIVGEVQLAAN--- 79 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d-~L~~-~~l~I~~E~~l~I~--- 79 (284)
+.|+..+....+ +++.+++++++.++++++|.+|++|.++..-. +.. ++.+ .++.+.++..-+..
T Consensus 145 ~~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (268)
T 3qax_A 145 QTGTYQEHYLLS-QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPS---------VGRVVLKDFPNLVATRLELPPECWVL 214 (268)
T ss_dssp ETTSHHHHHHHT-STTCCEEEESCHHHHHHHHHTTSSSEEEECHH---------HHHHHGGGCTTEEEEEEECCGGGCBC
T ss_pred ecCcHHHHHHHh-CCCceEEecCCHHHHHHHHHcCCCCEEEecHH---------HHHHHHHhCCCcEEecCccCcccccc
Confidence 467777776665 67788999999999999999999999887522 111 1222 23677765544444
Q ss_pred -eEeeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 80 -FCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 80 -~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
.+++.+++ +|+-..+..++|.+
T Consensus 215 ~~~~~~~k~-----------~~~l~~~l~~~l~~ 237 (268)
T 3qax_A 215 GCGLGVAKD-----------RPEEIQTIQQAITD 237 (268)
T ss_dssp CEEEEECTT-----------CHHHHHHHHHHHHH
T ss_pred cEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 55655543 56667777777765
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=88.44 E-value=3 Score=37.46 Aligned_cols=67 Identities=7% Similarity=0.177 Sum_probs=46.8
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecC---CCcHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEAS---MADPRAQNAL 262 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~---~~d~~~~~al 262 (284)
+..|.+.-+|+||-..++-+.++.+|+|+..+........ +.|.+-+.++.. .+...+++.+
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~~L~~~f 70 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTES---------------GHFFMRVVFNAAAKVIPLASLRTGF 70 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTT---------------TEEEEEEEEEESSCCCCHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCC---------------CceEEEEEEEcCCCCCCHHHHHHHH
Confidence 3456667799999999999999999999999988743222 234333444432 3446788888
Q ss_pred HHHHh
Q 023305 263 GHLQE 267 (284)
Q Consensus 263 ~~L~~ 267 (284)
+.+.+
T Consensus 71 ~~la~ 75 (288)
T 3obi_A 71 GVIAA 75 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77754
No 28
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=88.39 E-value=3.1 Score=37.70 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=47.4
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecC---CCcHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEAS---MADPRAQNAL 262 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~---~~d~~~~~al 262 (284)
+..|.+.-+|+||-..++-+.++.+|+|+..+...-.+.. +.|..-++++.. .+...+++.+
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~---------------g~FfMr~~~~~~~~~~~~~~L~~~l 86 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLS---------------GWFFMRHEIRADTLPFDLDGFREAF 86 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTT---------------TEEEEEEEEEGGGSSSCHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCC---------------CeEEEEEEEecCCCCCCHHHHHHHH
Confidence 5566677799999999999999999999999888743322 234334455432 2346777777
Q ss_pred HHHHh
Q 023305 263 GHLQE 267 (284)
Q Consensus 263 ~~L~~ 267 (284)
+.+.+
T Consensus 87 ~~la~ 91 (302)
T 3o1l_A 87 TPIAE 91 (302)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 29
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=88.35 E-value=0.75 Score=38.75 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=38.6
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
..|+..+....+.++..+++.+++..+++++|.+|++|+.+..
T Consensus 129 ~~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d 171 (243)
T 4h5g_A 129 QKGTVPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMD 171 (243)
T ss_dssp ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEE
T ss_pred cCCcHHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEec
Confidence 4688888888888999999999999999999999999998764
No 30
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=87.90 E-value=2.3 Score=35.19 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=58.6
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeecccc-cccc--CCeEEEEEE-EEeeee
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD-LLLR--HRLHIVGEV-QLAANF 80 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d-~L~~--~~l~I~~E~-~l~I~~ 80 (284)
..|+..+....+. +.+++.+++.++++++|.+|++|+.+..-. ++. ++.+ .++.++++. ..+...
T Consensus 112 ~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (232)
T 3i6v_A 112 QTATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRD---------YLVPIVAESGGELMFVGDDVPLGGGV 180 (232)
T ss_dssp ETTSHHHHHHHHS--SSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHTTTSSEEEEEEEECSSCE
T ss_pred ecCchHHHHHHhc--CCeEEEeCCHHHHHHHHHcCCcCEEEEChH---------HHHHHHHhCCCCeEEecCCCCCCCcE
Confidence 4677777766665 678999999999999999999999887532 111 1222 457787753 444556
Q ss_pred EeeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 81 CLLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 81 ~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
+++.+++ +|+-..+..++|.+
T Consensus 181 ~~~~~k~-----------~~~l~~~ln~~l~~ 201 (232)
T 3i6v_A 181 GMGLRES-----------DGELRGKFDAAITS 201 (232)
T ss_dssp EEEECTT-----------CHHHHHHHHHHHHH
T ss_pred EEEEeCC-----------CHHHHHHHHHHHHH
Confidence 6666543 56666666666665
No 31
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=87.60 E-value=0.63 Score=37.80 Aligned_cols=92 Identities=12% Similarity=0.030 Sum_probs=57.2
Q ss_pred CCCcHHHHHHHhhCCC-CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeee----
Q 023305 5 LPGSFSEDAALKAYPK-CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAAN---- 79 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~-~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~---- 79 (284)
+.|+..+.-..+.+++ .+++.+.+.++++++|.+|++|+.+..-... . ..+......++.+.+.......
T Consensus 115 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3tql_A 115 QGGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGDTPLI-K----QWLKQNGRREYVLIGKPVNDPNYFGK 189 (227)
T ss_dssp ETTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESCHHHH-H----HHHHHTTCCSEEEEEEECCCGGGCCS
T ss_pred EecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeChHHH-H----HHHHhCCCCCEEEecCcccCcccccc
Confidence 3577766666666666 8899999999999999999999988763311 0 0111111123666655433222
Q ss_pred -eEeeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 80 -FCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 80 -~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
.+++.+++ +|+-..+..+.|.+
T Consensus 190 ~~~~~~~~~-----------~~~l~~~l~~~l~~ 212 (227)
T 3tql_A 190 GVGIAVKKG-----------NQALLLKLNKALAA 212 (227)
T ss_dssp CBCCEEETT-----------CHHHHHHHHHHHHH
T ss_pred ceEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 23444432 67777777777765
No 32
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=87.57 E-value=4.9 Score=38.05 Aligned_cols=69 Identities=17% Similarity=0.351 Sum_probs=50.0
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 265 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L 265 (284)
...|.+..+|.||.|.++-++|+++|||+....++-... .-| -.+|+++. .+.-++++++|
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~----------------~~y-~~~d~~~~--~~~~~~~~~~l 403 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGE----------------VGY-LVMEADGV--GEASDAVLQEI 403 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSS----------------CEE-EEEEECCC--HHHHHHHHHHH
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCc----------------eEE-EEEEecCC--CCCcHHHHHHH
Confidence 567888889999999999999999999999888775321 234 45699732 13345777888
Q ss_pred HhcCCceE
Q 023305 266 QEFATFLR 273 (284)
Q Consensus 266 ~~~~~~vk 273 (284)
+..-.-+|
T Consensus 404 ~~~~~~~~ 411 (416)
T 3k5p_A 404 REIPGTIR 411 (416)
T ss_dssp HTSTTEEE
T ss_pred HhCCCEEE
Confidence 76554443
No 33
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=87.36 E-value=1.6 Score=36.20 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=28.6
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCceeeeeeeee
Q 023305 187 TSIVFTLDEGPGVLFKALAVFALREINLTKIESRP 221 (284)
Q Consensus 187 tsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP 221 (284)
..|.+..+|+||-+.++-+.|+.+|+|+..+.-.-
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~ 41 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM 41 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee
Confidence 34556669999999999999999999998655443
No 34
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=87.31 E-value=2.6 Score=37.89 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=46.5
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecC--CCcHHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEAS--MADPRAQNALG 263 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~--~~d~~~~~al~ 263 (284)
+..|.+..+|+||-..++-+.|+.+|+|+..+.+.-.... ..|..-++++.. .+...+++.++
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~L~~~f~ 72 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQS---------------GRFFIRVEFRQPDDFDEAGFRAGLA 72 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT---------------TEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCC---------------CeeEEEEEEecCCCCCHHHHHHHHH
Confidence 3456677799999999999999999999999988832222 233333445432 23467777777
Q ss_pred HHHh
Q 023305 264 HLQE 267 (284)
Q Consensus 264 ~L~~ 267 (284)
.+.+
T Consensus 73 ~la~ 76 (286)
T 3n0v_A 73 ERSE 76 (286)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 7654
No 35
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=86.60 E-value=3.9 Score=36.71 Aligned_cols=67 Identities=12% Similarity=0.249 Sum_probs=45.6
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCC-CcHHHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASM-ADPRAQNALGH 264 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~-~d~~~~~al~~ 264 (284)
+..|.+.-+|+||-..++-+.++.+|+|+..+........ +.|..-++++... +...+++.++.
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~L~~~f~~ 71 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDS---------------SKFFMRVSVEIPVAGVNDFNSAFGK 71 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT---------------TEEEEEEEEECCC---CHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCC---------------CeEEEEEEEEcCCCCHHHHHHHHHH
Confidence 4456677799999999999999999999999988743222 2343344554421 22467777777
Q ss_pred HHh
Q 023305 265 LQE 267 (284)
Q Consensus 265 L~~ 267 (284)
+.+
T Consensus 72 la~ 74 (287)
T 3nrb_A 72 VVE 74 (287)
T ss_dssp HHG
T ss_pred HHH
Confidence 654
No 36
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=86.51 E-value=0.75 Score=38.03 Aligned_cols=43 Identities=19% Similarity=0.102 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
+.|+..+....+.+++.+++.+++..+++++|.+|++|+.+..
T Consensus 131 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 173 (239)
T 3kbr_A 131 NPGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTD 173 (239)
T ss_dssp CTTSHHHHHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEE
T ss_pred cCCCcHHHHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEc
Confidence 4788888888888888999999999999999999999998875
No 37
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=86.40 E-value=1 Score=37.73 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
+.|+..+....+.+++.++++.++.++++++|.+|++|+++..
T Consensus 156 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 198 (269)
T 4i62_A 156 QKGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFE 198 (269)
T ss_dssp ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEE
T ss_pred ecCchHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeC
Confidence 4678888777778888899999999999999999999999886
No 38
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=85.13 E-value=1.3 Score=35.99 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=37.0
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
+.|+..+....+.+++.+++.+++..+++++|.+|++|+++..
T Consensus 118 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 160 (229)
T 2y7i_A 118 ENGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGD 160 (229)
T ss_dssp ETTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSCSEEEEE
T ss_pred ecCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHcCCcCEEEec
Confidence 4677777777767778889999999999999999999998886
No 39
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=85.12 E-value=4 Score=32.84 Aligned_cols=114 Identities=11% Similarity=0.120 Sum_probs=65.9
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCC-------CCcCC
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-------IKADQ 92 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~-------~~l~~ 92 (284)
+.++++.+++.++++++.+|++|+++-++.-+.+- ...++ ...++. ....+++++++ .+++|
T Consensus 41 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r--~~~~~--~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~d 109 (228)
T 2pyy_A 41 ESKLIEYSSVPELISAIKDNKVNLGIAAISITAER--EQNFD--FSLPIF-------ASGLQIMVRNLESGTGDIRSIDD 109 (228)
T ss_dssp CEEEEECSSHHHHHHHHHTTSCSEECSSCBCCHHH--HHHSE--ECSCSE-------EEEEEEEEEC-----CCCCSGGG
T ss_pred cEEEEEcCCHHHHHHHHHCCCcCEEEeccccCHHH--Hccce--ecccch-------hcceEEEEECCccccCCcCCHHH
Confidence 46788899999999999999999986432211000 00011 011221 12233444332 13344
Q ss_pred cc--EEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 93 LK--RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 93 i~--~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
++ +|....... ...+|.+.++..+.+.|..++.+++..+. -.+++.....+.
T Consensus 110 L~g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~l~~g~--~D~~~~~~~~~~ 163 (228)
T 2pyy_A 110 LPGKVVATTAGST--AATYLREHHISVLEVPKIEEAYKALQTKK--ADAVVFDAPVLL 163 (228)
T ss_dssp CTTCEEEEETTSH--HHHHHHHTTCEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHH
T ss_pred cCCCeEEEEcCcH--HHHHHHHcCCceEecCCHHHHHHHHHcCC--CCEEEecHHHHH
Confidence 43 454432221 34677777888888899999999998763 347777765554
No 40
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=84.95 E-value=2 Score=36.30 Aligned_cols=75 Identities=8% Similarity=-0.014 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHhhCCC------CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccc--cCCeEEEEEEEE
Q 023305 5 LPGSFSEDAALKAYPK------CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL--RHRLHIVGEVQL 76 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~------~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~--~~~l~I~~E~~l 76 (284)
+.|+..+....+.+++ .+++.+++.++++++|.+|++|+.+..-.. . ..++. ..++.+......
T Consensus 143 ~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~ 214 (259)
T 4dz1_A 143 PRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPV-Y-------FTFKNKKKMPIESRYVFKN 214 (259)
T ss_dssp ETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHH-H-------HHHHHTSCCCEEEEEEEEE
T ss_pred eCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHH-H-------HHHhccCCCceEeecccCC
Confidence 4677777777777765 688999999999999999999999886321 1 01112 234666666655
Q ss_pred eeeeEeeecCC
Q 023305 77 AANFCLLALPG 87 (284)
Q Consensus 77 ~I~~~L~~~~~ 87 (284)
+...+++.+++
T Consensus 215 ~~~~~~~~~k~ 225 (259)
T 4dz1_A 215 VDQLGIAFKKG 225 (259)
T ss_dssp EEEEEEEEETT
T ss_pred CceEEEEEeCC
Confidence 66677777665
No 41
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=84.18 E-value=4.6 Score=37.92 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=46.2
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 265 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L 265 (284)
...|++.-.|+||.+.++-+.|.++|||+......- ++ ..-+..+|++.. ++.-++++++|
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g----------------~~A~~vidvD~~--~~~~~~~l~~l 391 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SA----------------QMGYVVIDIEAD--EDVAEKALQAM 391 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CS----------------SEEEEEEEEECC--HHHHHHHHHHH
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CC----------------CEEEEEEEcCCC--CCCCHHHHHHH
Confidence 445888888999999999999999999998766544 32 234556799874 11234677778
Q ss_pred Hhc
Q 023305 266 QEF 268 (284)
Q Consensus 266 ~~~ 268 (284)
++.
T Consensus 392 ~~i 394 (404)
T 1sc6_A 392 KAI 394 (404)
T ss_dssp HTS
T ss_pred hcC
Confidence 764
No 42
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=83.37 E-value=2.4 Score=36.21 Aligned_cols=93 Identities=18% Similarity=0.137 Sum_probs=55.6
Q ss_pred CCCcHHHHHHHhhC----CCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeee
Q 023305 5 LPGSFSEDAALKAY----PKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANF 80 (284)
Q Consensus 5 p~GtfS~~Aa~~~f----~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~ 80 (284)
+.|+..+....+++ .+.+++++.+..+++.+|.+|++|+++..... ....+...- ...++.+.+....+...
T Consensus 136 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~ 211 (287)
T 2vha_A 136 TSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDAL-LAGERAKAK---KPDNWDIVGKPQSQEAY 211 (287)
T ss_dssp ETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHH-HHHHHTTSS---SGGGEEEESCCSCEEEE
T ss_pred eCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHH-HHHHHHhCC---CCCceEecCCccccCce
Confidence 46777777666554 35688999999999999999999998875321 111111000 01235555433333445
Q ss_pred EeeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 81 CLLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 81 ~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
.++.+++ +|+-..+..++|.+
T Consensus 212 ~~~~~k~-----------~~~l~~~l~~~l~~ 232 (287)
T 2vha_A 212 GCMLRKD-----------DPQFKKLMDDTIAQ 232 (287)
T ss_dssp EEEECTT-----------CHHHHHHHHHHHHH
T ss_pred EEEEeCC-----------CHHHHHHHHHHHHH
Confidence 5655543 46666666666655
No 43
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=82.92 E-value=0.89 Score=38.52 Aligned_cols=92 Identities=10% Similarity=-0.002 Sum_probs=56.0
Q ss_pred CCCcHHHHHHHhh-------CCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeecccccccc-CCeEEEEEEEE
Q 023305 5 LPGSFSEDAALKA-------YPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLR-HRLHIVGEVQL 76 (284)
Q Consensus 5 p~GtfS~~Aa~~~-------f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~-~~l~I~~E~~l 76 (284)
+.|+..+....++ +++.+++.+++.++++++|.+|++|+.+..-.. . ...+..... .++.+.+....
T Consensus 133 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~---~--~~~~~~~~~~~~l~~~~~~~~ 207 (268)
T 3hv1_A 133 QAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVY---A--NYYLEKSGVLDQYNVMPAGYE 207 (268)
T ss_dssp ETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHH---H--HHHHHHTTCGGGEEEEECSSC
T ss_pred EeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHH---H--HHHHHhCCCCCceEECCCCCC
Confidence 3566666444332 233678999999999999999999999886331 1 001111111 34667665544
Q ss_pred eeeeEeeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 77 AANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 77 ~I~~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
+...+++.+++ +|+-..+..++|.+
T Consensus 208 ~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 232 (268)
T 3hv1_A 208 GESFAVGARKV-----------DKTLIKKINQGFET 232 (268)
T ss_dssp CEEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 55556665543 46666777777765
No 44
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=82.67 E-value=15 Score=29.43 Aligned_cols=117 Identities=12% Similarity=0.035 Sum_probs=67.8
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCC-----CCcCCcc
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-----IKADQLK 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~-----~~l~~i~ 94 (284)
+.++++..++.++++++.+|++|+++-++.-+.+-.-...++. ... +......++++++ .+++|++
T Consensus 45 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~~~~--s~p-------~~~~~~~~~~~~~~~~~i~~~~dL~ 115 (233)
T 1ii5_A 45 NSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGITF--TQP-------YFSSGIGLLIPGTATPLFRSVGDLK 115 (233)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEEECCHHHHTSTTEEE--CCC-------CEEEEEEEEEEGGGTTTCSSGGGGT
T ss_pred cEEEEEeCCHHHHHHHHHCCCcCEEEeeeecCccccccceeEE--ccc-------eeecCeEEEEECCCCCCCCCHHHhC
Confidence 4678888899999999999999998755431111000001110 111 1223344555433 1344443
Q ss_pred --EEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 95 --RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 95 --~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
+|..-.-. . ...+|.+.++..+.+.|..++.+++..+. -.|++.....+..
T Consensus 116 g~~v~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 168 (233)
T 1ii5_A 116 NKEVAVVRDT-T-AVDWANFYQADVRETNNLTAAITLLQKKQ--VEAVMFDRPALIY 168 (233)
T ss_dssp TCEEEEETTS-H-HHHHHHHTTCEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred CCeEEEECCc-c-HHHHHHHcCCCeEEcCCHHHHHHHHHcCC--ccEEEeCHHHHHH
Confidence 44432221 1 23466666788888899999999998763 3477777665543
No 45
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=82.66 E-value=1.8 Score=37.54 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=38.0
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
+.|+..+....+.+++.+++.+.+..+++++|.+|++|.++++
T Consensus 170 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 212 (291)
T 2yjp_A 170 NKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHD 212 (291)
T ss_dssp ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred ecCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCccEEEec
Confidence 5688888777777888889999999999999999999999886
No 46
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=81.82 E-value=5.1 Score=33.46 Aligned_cols=35 Identities=6% Similarity=-0.052 Sum_probs=28.6
Q ss_pred EEEEEEecCCCchHHHHHHHHHhCCceeeeeeeee
Q 023305 187 TSIVFTLDEGPGVLFKALAVFALREINLTKIESRP 221 (284)
Q Consensus 187 tsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP 221 (284)
.-|.+..+|+||-..++-+.++.+|+|+..+.---
T Consensus 6 ~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~ 40 (195)
T 2nyi_A 6 FVVSVAGSDRVGIVHDFSWALKNISANVESSRMAC 40 (195)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEE
Confidence 34555669999999999999999999998655543
No 47
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=81.79 E-value=6 Score=38.35 Aligned_cols=72 Identities=11% Similarity=0.169 Sum_probs=49.6
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeee-eeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIES-RPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGH 264 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeS-RP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~ 264 (284)
-..|++..+|+||.+.++.+.+..+|||+..+.- |..++ .+-...|+++.... +.+.+.|++
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~----------------~~a~~~i~vd~~~~-~~~l~~l~~ 516 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEG----------------PGATILLRLDQDVP-DDVRTAIAA 516 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSS----------------SCEEEEEEESSCCC-HHHHHHHHH
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCC----------------CEEEEEEEECCCCC-HHHHHHHhc
Confidence 4568888899999999999999999999998764 33222 35677788887654 334444555
Q ss_pred HHhcCCceEEE
Q 023305 265 LQEFATFLRVL 275 (284)
Q Consensus 265 L~~~~~~vkvL 275 (284)
+... ..++++
T Consensus 517 ~~~i-~~v~~v 526 (529)
T 1ygy_A 517 AVDA-YKLEVV 526 (529)
T ss_dssp HHTE-EEEEEE
T ss_pred CCCc-cEEEEE
Confidence 5433 334443
No 48
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=80.63 E-value=3.7 Score=35.32 Aligned_cols=90 Identities=17% Similarity=0.068 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEE-EEEE-eeeeEe
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVG-EVQL-AANFCL 82 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~-E~~l-~I~~~L 82 (284)
+.|+..+....++ +.+++++.+..+++.+|.+|++|.++++-.. ... .+......++.+.+ ...- +....+
T Consensus 170 ~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~i~~~~~-~~~----~~~~~~~~~l~~~~~~~~~~~~~~~i 242 (283)
T 2yln_A 170 SLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDELA-VLD----YLKKNPNAGVKIVWSAPADEKVGSGL 242 (283)
T ss_dssp CTTSHHHHHHHHT--TCEEEECSSHHHHHHHHHTTSCCEEEEEHHH-HHH----HHHHSTTSSEEEEEECCGGGCEEECC
T ss_pred ecCchHHHHHHHc--CCeEEEeCCHHHHHHHHHcCCCCEEEecHHH-HHH----HHHhCCCCcEEEccCcccCCcccEEE
Confidence 5677766665554 5688899999999999999999999886321 111 01111112366666 3333 344555
Q ss_pred eecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 83 LALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 83 ~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
+.+++ +|+-..+..++|.+
T Consensus 243 ~~~k~-----------~~~l~~~i~~al~~ 261 (283)
T 2yln_A 243 IVNKG-----------NDEAVAKFSTAINE 261 (283)
T ss_dssp EEESS-----------CHHHHHHHHHHHHH
T ss_pred EEeCC-----------CHHHHHHHHHHHHH
Confidence 55543 46666777777765
No 49
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=79.57 E-value=6.8 Score=31.41 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=46.6
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeee
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLA 84 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~ 84 (284)
+.|+..+....+ .+.+++...+..+++++|.+|++|+.+.+-.. .... .......++.+.+...-+..++++.
T Consensus 118 ~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (228)
T 2pyy_A 118 TAGSTAATYLRE--HHISVLEVPKIEEAYKALQTKKADAVVFDAPV-LLFY----AANEGKGKVEIVGSILREESYGIIL 190 (228)
T ss_dssp ETTSHHHHHHHH--TTCEEEEESSHHHHHHHHHTTSSSEEEEEHHH-HHHH----HHTTTTTTEEEEEEEEEEEEECCEE
T ss_pred EcCcHHHHHHHH--cCCceEecCCHHHHHHHHHcCCCCEEEecHHH-HHHH----HHhCCCCcEEEecccccceeEEEEE
Confidence 356655554443 35678899999999999999999999887331 1110 1111112567776655455566665
Q ss_pred cCC
Q 023305 85 LPG 87 (284)
Q Consensus 85 ~~~ 87 (284)
+++
T Consensus 191 ~~~ 193 (228)
T 2pyy_A 191 PNN 193 (228)
T ss_dssp CTT
T ss_pred eCC
Confidence 543
No 50
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=79.51 E-value=2.6 Score=34.58 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=35.8
Q ss_pred CCCcHHHHHHHhhC--CCCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKAY--PKCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~f--~~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
+.|+..+....+.+ ++.+++.+++..+++++|.+|++|+++..
T Consensus 117 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 161 (239)
T 1lst_A 117 LQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQD 161 (239)
T ss_dssp ETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred EcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 46777777766666 45788999999999999999999998876
No 51
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=79.04 E-value=3.1 Score=34.61 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHhh-CCCCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKA-YPKCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~-f~~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
+.|+..+....+. +++.+++.+++..+++++|.+|++|+++..
T Consensus 130 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~ 173 (257)
T 2q88_A 130 PGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLP 173 (257)
T ss_dssp CTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEE
T ss_pred ECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcC
Confidence 5677777666554 455688999999999999999999998875
No 52
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=78.84 E-value=11 Score=32.77 Aligned_cols=113 Identities=15% Similarity=0.066 Sum_probs=72.8
Q ss_pred hCCC--CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEe---eeeEeeecCCCCcC
Q 023305 17 AYPK--CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLA---ANFCLLALPGIKAD 91 (284)
Q Consensus 17 ~f~~--~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~---I~~~L~~~~~~~l~ 91 (284)
.|.+ .++.++.+++..+.+|.+|.+|++|+-.. .+-..+.+.++.++-++.-| -.|.|+.+++ +..
T Consensus 40 ~f~gi~~~i~~mrg~~~RI~aL~~gk~D~aI~S~~--------aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~-~~~ 110 (231)
T 2ozz_A 40 QFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRL--------AAESYLSQNNLCIALELGPHTYVGEHQLICRKG-ESG 110 (231)
T ss_dssp TTTTSCEEEEECSCHHHHHHHHHTTSCSEEEEEHH--------HHHHHHHHSCEEEEEECCTTSSSCCEEEEEETT-CGG
T ss_pred HhcCCcEEEEEccChHHHHHHHHcCCCCEEEEecc--------cchhhhcccCeEEEEEcCCCccccCeEEEEeCC-Ccc
Confidence 3544 46889999999999999999999998532 12222222334444333222 2366666655 335
Q ss_pred CccEEEecHHHHHHHHHHHHh---cCCeEEec-CCHHHHHHHHHhcCCCCeEEEc
Q 023305 92 QLKRVLSHPQALASSDIVLTQ---LGVARENV-DDTASAAQYVASNGLRDAGAVA 142 (284)
Q Consensus 92 ~i~~V~SHpqal~Qc~~fl~~---~~~~~~~~-~sTa~Aa~~v~~~~~~~~aAI~ 142 (284)
.|++|--.+-...|+- |.+ .+...... .+..++...+..++ -+ |+|-
T Consensus 111 ~ikrVGvd~gS~dq~~--lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~-ID-A~Iw 161 (231)
T 2ozz_A 111 NVKRVGLDSRSADQKI--MTDVFFGDSDVERVDLSYHESLQRIVKGD-VD-AVIW 161 (231)
T ss_dssp GCCEEEECTTCHHHHH--HHHHHHTTSCCEEEECCHHHHHHHHHHTS-CC-EEEE
T ss_pred ccEEEEecCCChhHHH--HHhhhcCCCeEEEEECCHHHHHHHHHcCC-cc-EEEE
Confidence 6699999988888873 333 35555455 78888888888763 33 5555
No 53
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=78.73 E-value=10 Score=30.11 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=62.2
Q ss_pred hCCCCceee-cCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC-------
Q 023305 17 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI------- 88 (284)
Q Consensus 17 ~f~~~~~~~-~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~------- 88 (284)
.+|+.++.. ..+-.++.+++.+|++|+|++.-..... + +..+......+++++.++-
T Consensus 33 ~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~~~-------------~--~~~~~l~~~~~~~v~~~~~pl~~~~~ 97 (222)
T 4ab5_A 33 MWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEKQN-------------G--ISFQPLFAYEMVGICAPDHPLAAKNV 97 (222)
T ss_dssp HSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCCCT-------------T--EEEEEEEEEEEEEEECTTSGGGGCSE
T ss_pred HCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCCcC-------------C--eEEEEeecCcEEEEecCCChhhccCC
Confidence 356655432 3344678999999999999985321111 1 2222233334445444432
Q ss_pred -CcCCc---cEEEec-H-HHHHHHHHHHHhcCCe--EEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 89 -KADQL---KRVLSH-P-QALASSDIVLTQLGVA--RENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 89 -~l~~i---~~V~SH-p-qal~Qc~~fl~~~~~~--~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
+++|+ .-|.-. . ....+..+|+.+.+.. ...++|...+.++|+.+ ...+|.+...++.
T Consensus 98 i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~gi~~~p~~~~~~ 163 (222)
T 4ab5_A 98 WTAEDFIGETLITYPVPDEMLDLPKKILIPKNINPPRRHSELTIAIIQLVASR---RGIAALPYWTVMP 163 (222)
T ss_dssp ECGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCCEEECSCHHHHHHHHHTT---SCBEEEEHHHHHH
T ss_pred cCHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCCeEecCCHHHHHHHHHcC---CeEEEcchHHhHH
Confidence 23333 233321 1 2234455666665433 46677777777888765 2466777766543
No 54
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=78.60 E-value=2.5 Score=35.91 Aligned_cols=44 Identities=9% Similarity=-0.086 Sum_probs=36.3
Q ss_pred CCCcHHHHHHHhhCC-CCceeecCCHHHHHHHHHhCCCCeEEEee
Q 023305 5 LPGSFSEDAALKAYP-KCETVPCDEFEDTFKAVELWLADKAVLPI 48 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~-~~~~~~~~s~~~v~~av~~~~~d~gvvPi 48 (284)
+.|+..+....+.++ ..+++.+.+..+++++|.+|++|+++.+-
T Consensus 153 ~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~ 197 (272)
T 2pvu_A 153 QNATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITDN 197 (272)
T ss_dssp ETTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEEH
T ss_pred EcCchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeCH
Confidence 457777776666666 67788999999999999999999998863
No 55
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=78.36 E-value=6.6 Score=36.28 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=29.9
Q ss_pred EEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeC
Q 023305 188 SIVFTLDEGPGVLFKALAVFALREINLTKIESRPQ 222 (284)
Q Consensus 188 si~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~ 222 (284)
.|.+.-+|+||-...+-+.++.+|+|+..++....
T Consensus 14 ~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~ 48 (415)
T 3p96_A 14 LITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVI 48 (415)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEE
Confidence 34455699999999999999999999999988753
No 56
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=77.33 E-value=2.2 Score=35.35 Aligned_cols=43 Identities=12% Similarity=0.034 Sum_probs=33.0
Q ss_pred CCCcHHHHHHHhhCCC----CceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKAYPK----CETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~----~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
+.|+..+....+++.+ .+++++.+..+++++|.+|++|.++.+
T Consensus 154 ~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 200 (259)
T 2v25_A 154 AQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVD 200 (259)
T ss_dssp ETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred ecCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEec
Confidence 3566666655555432 367899999999999999999999885
No 57
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=77.18 E-value=4.6 Score=38.57 Aligned_cols=68 Identities=12% Similarity=0.197 Sum_probs=44.0
Q ss_pred eEEEE--EEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHH
Q 023305 186 KTSIV--FTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALG 263 (284)
Q Consensus 186 ktsi~--f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~ 263 (284)
.+... |.+.|+||.|.++-.+|.++||++..+-.++..... ..--+.++- -...+.+++++++
T Consensus 357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~-------------~~~~~v~~t--h~~~e~~~~~~~~ 421 (444)
T 3mtj_A 357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGE-------------EQVDIILLT--HVTLEKNVNAAIA 421 (444)
T ss_dssp EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC-------------------CEEEEEEE--CSEEHHHHHHHHH
T ss_pred ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCC-------------CCceEEEEe--ccCCHHHHHHHHH
Confidence 45444 556799999999999999999999988777643110 011222222 1234578999999
Q ss_pred HHHhc
Q 023305 264 HLQEF 268 (284)
Q Consensus 264 ~L~~~ 268 (284)
+|+..
T Consensus 422 ~~~~~ 426 (444)
T 3mtj_A 422 KIEAL 426 (444)
T ss_dssp HHTTS
T ss_pred HHhcC
Confidence 99864
No 58
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=76.27 E-value=39 Score=29.56 Aligned_cols=165 Identities=10% Similarity=0.037 Sum_probs=90.3
Q ss_pred ccCCCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHhCCCCeEEEeeeeccccee------------
Q 023305 2 MQGLPGSFSEDAALKAY--------PKCETVPCDE-----FEDTFKAVELWLADKAVLPIENSSSGSI------------ 56 (284)
Q Consensus 2 ylGp~GtfS~~Aa~~~f--------~~~~~~~~~s-----~~~v~~av~~~~~d~gvvPiENS~~G~V------------ 56 (284)
..-|+|+..+.++..+. ++.++..+++ -.+++++|..|.+|++++..-+ ..|.+
T Consensus 7 ~~~~~~~~~~~~~~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~-~~~~~p~~~~~~lPf~~ 85 (301)
T 2pfz_A 7 TAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTN-FANEDPVYELDGLPFLA 85 (301)
T ss_dssp CSSCTTSHHHHHHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGG-GTTTCGGGTGGGSTTSC
T ss_pred ccCCCCchhhHHHHHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhh-ccccCchhhhhcCCCCC
Confidence 34578888788777542 2345544443 3799999999999999886321 11111
Q ss_pred -------------eccc-cccccCCeEEEEEEEEeeeeEeeecCC-CCcCCcc--EEEecHHHHHHHHHHHHhcCCeEEe
Q 023305 57 -------------HRNY-DLLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLTQLGVAREN 119 (284)
Q Consensus 57 -------------~~t~-d~L~~~~l~I~~E~~l~I~~~L~~~~~-~~l~~i~--~V~SHpqal~Qc~~fl~~~~~~~~~ 119 (284)
.+.+ +.+.+.++++.+-...+-.+ +..++. .+++|++ +|..- ... ...+++..|+..++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lGa~pv~ 161 (301)
T 2pfz_A 86 TGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQG-IFANRDIKQVSDMKGLKWRAY-SPV--TAKIAELVGAQPVT 161 (301)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEES-SHH--HHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccCCcc-eeeCCCCCChHHhcCCEEecC-Chh--HHHHHHHcCCccee
Confidence 0001 12234578887754444333 444333 3566776 66653 222 35788888988776
Q ss_pred cCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccCCCCCee-EEEEEee
Q 023305 120 VDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNIT-RFLVLAR 174 (284)
Q Consensus 120 ~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~T-RF~vl~~ 174 (284)
. +.++....+..+ .- .|+..+.......++.=+.+.+....+.++ -++++.+
T Consensus 162 ~-~~~E~y~ALq~G-~v-Dg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 214 (301)
T 2pfz_A 162 V-QQAELAQAMATG-VI-DSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNK 214 (301)
T ss_dssp C-CGGGHHHHHHTT-SC-SEEEECHHHHHHTTGGGTCCEEECCCCCCCEEEEEEEH
T ss_pred c-CHHHHHHHHhcC-ee-eEEecCccccccccHHHHhhhheecccccceeEEEEcH
Confidence 5 334444444544 23 355666665555555433444443333333 3444444
No 59
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=75.80 E-value=13 Score=30.30 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=69.6
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEE--eeeeEeeecCCC---CcCCcc
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL--AANFCLLALPGI---KADQLK 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l--~I~~~L~~~~~~---~l~~i~ 94 (284)
+.++++. ++.+++.++.+|++|+++-++- .+-+ ....+.. .-+. .....++++++. +++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~--r~~~~~~--~p~~~~~~~~~~~~~~~~~i~~~~dL~ 117 (242)
T 3del_B 51 TLDVREF-SFDALILNLKQHRIDAVITGMS--------ITPS--RLKEILM--IPYYGEEIKHLVLVFKGENKHPLPLTQ 117 (242)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSSSEECSSBB--------CCHH--HHTTEEE--EEEEEEEESEEEEEEESCCSCCCCGGG
T ss_pred ceEEEEc-CHHHHHHHHhCCCcCEEEecCc--------CCHH--HHhcccc--eeeeecCCceEEEEeCCCCCCCHHHhC
Confidence 4678888 8999999999999998752221 1111 1122222 3344 555677776542 344543
Q ss_pred --EEEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhc
Q 023305 95 --RVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 150 (284)
Q Consensus 95 --~V~SHpqal~Qc~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~y 150 (284)
+|.... .... ..++.+. ++..+.+.+..++.+++..+. -.|+++....+..+
T Consensus 118 g~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~L~~g~--vDa~~~~~~~~~~~ 172 (242)
T 3del_B 118 YRSVAVQT-GTYQ-EAYLQSLSEVHIRSFDSTLEVLMEVMHGK--SPVAVLEPSIAQVV 172 (242)
T ss_dssp SSCEEEET-TSHH-HHHHHHSTTCCEEEESSHHHHHHHHHTTS--SSEEEECHHHHHHH
T ss_pred CCEEEEEc-CcHH-HHHHHhCCCceEEEECCHHHHHHHHHcCC--CCEEEecHHHHHHH
Confidence 443322 2222 3345443 677888899999999998863 35778877766544
No 60
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=73.18 E-value=32 Score=27.15 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=65.5
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC----CcCCcc-
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI----KADQLK- 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~----~l~~i~- 94 (284)
+.++++. ++.++++++.+|++|+++-.+.-+.+- ...++ ....+ .....+++++++. +++|++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r--~~~~~--~~~p~-------~~~~~~~~~~~~~~~i~~~~dL~g 109 (226)
T 1wdn_A 42 DYELKPM-DFSGIIPALQTKNVDLALAGITITDER--KKAID--FSDGY-------YKSGLLVMVKANNNDVKSVKDLDG 109 (226)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSEEEEEEECCHHH--HTTSE--ECSCC-------EEEEEEEEEETTCCSCSSSTTTTT
T ss_pred EEEEEEC-CHHHHHHHHhCCCCCEEEEcCcCCHHH--hCccc--cccch-------hcCceEEEEeCCCCCCCCHHHhCC
Confidence 3566766 789999999999999987554311110 00011 01111 2233455555442 344443
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 95 -RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 95 -~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
+|....-. . ...||.+. +...+.+.|..++.+++..+. -.|++.+...+..
T Consensus 110 ~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 163 (226)
T 1wdn_A 110 KVVAVKSGT-G-SVDYAKANIKTKDLRQFPNIDNAYMELGTNR--ADAVLHDTPNILY 163 (226)
T ss_dssp CEEEEETTS-H-HHHHHHHHCCCSEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred CEEEEEcCC-c-HHHHHHHhCCCceEEEeCCHHHHHHHHHcCC--cCEEEeCcHHHHH
Confidence 55543222 2 24567664 677788889999999998763 3477777655543
No 61
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=73.15 E-value=28 Score=27.66 Aligned_cols=114 Identities=9% Similarity=-0.018 Sum_probs=62.3
Q ss_pred hCCCCcee-ecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCC--------
Q 023305 17 AYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-------- 87 (284)
Q Consensus 17 ~f~~~~~~-~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~-------- 87 (284)
.+|+.++. -..+..++.+++.+|++|+|++.-..... + +..+.......++++.++
T Consensus 36 ~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~-------------~--l~~~~l~~~~~~~v~~~~hpl~~~~~ 100 (232)
T 3ho7_A 36 ELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAETE-------------G--LEDDLLYYEEFLGYVSRCEPLFEQDV 100 (232)
T ss_dssp HSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCT-------------T--EEEEEEEEEEEEEEECTTSGGGGSSS
T ss_pred HCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCC-------------C--eEEEEecccCEEEEEcCCCccccCCC
Confidence 35665543 33567899999999999999986431111 1 122222333444444433
Q ss_pred CCcCCcc---EEEecHH--HHHHHHHHHHhcCC---e-EEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 88 IKADQLK---RVLSHPQ--ALASSDIVLTQLGV---A-RENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 88 ~~l~~i~---~V~SHpq--al~Qc~~fl~~~~~---~-~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
.+++|+. -|...+. ...+...++.+.+. . ...++|...+.++|+.+ ...+|.+...++
T Consensus 101 ~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~gi~~~p~~~~~ 167 (232)
T 3ho7_A 101 IRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESG---QGITFIPQLTVE 167 (232)
T ss_dssp BCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHHHTT---CCEEEEEGGGGG
T ss_pred cCHHHhcCCCEEEecCCCcHHHHHHHHHHHcCCCcCceeEEeCCHHHHHHHHHcC---CcEEEecHHHhh
Confidence 2233332 2222211 12345666666543 2 35677777777788765 346677776665
No 62
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=72.97 E-value=4.8 Score=39.18 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=50.6
Q ss_pred eEEEEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHH
Q 023305 186 KTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL 265 (284)
Q Consensus 186 ktsi~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L 265 (284)
+..+.+.+|++||+|.++++.+. +-|+++++=|.+ . ..+-..+|.+|.......++++++.|
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~--~--------------~~~~~~~~~~e~~~~~~~~~~~~~~l 399 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA--D--------------AKNACIFVGVRLSRGLEERKEILQML 399 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC--C--------------SSBCEEEEEEECSSTHHHHHHHHHHH
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEeecc--C--------------CCeEEEEEEEEeCCcHHHHHHHHHHH
Confidence 56788889999999999999887 799999998832 2 13445667777643257788889888
Q ss_pred HhcCCc
Q 023305 266 QEFATF 271 (284)
Q Consensus 266 ~~~~~~ 271 (284)
++..-.
T Consensus 400 ~~~g~~ 405 (514)
T 1tdj_A 400 NDGGYS 405 (514)
T ss_dssp TSSSCE
T ss_pred HhCCCC
Confidence 865443
No 63
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=72.95 E-value=7.1 Score=31.96 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=66.1
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCc--cE
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQL--KR 95 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i--~~ 95 (284)
.++++. ++.++++++.+|++|+++.++--+-+.. . .+.. ..-+......++++++. +++|+ ++
T Consensus 45 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~-----~-----~~~f-s~p~~~~~~~~~~~~~~~~~~~~dL~g~~ 112 (237)
T 3kzg_A 45 CTFEAY-IFDDLFPALKNREVDLVIASMIITDERK-----K-----HFIF-SLPYMESNSQYITTVDSKISTFDDLHGKK 112 (237)
T ss_dssp EEEEEE-CGGGHHHHHHTTSSSEECSSCBCCTTGG-----G-----TCEE-CCCSBCCEEEEEEETTCSCCSGGGGTTCE
T ss_pred eEEEEc-CHHHHHHHHhCCCCCEEEEccccChhHh-----c-----ccee-eeeeeecceEEEEECCCCCCCHHHhCCCE
Confidence 567777 7899999999999998765433221110 0 0100 01122334556666553 34444 24
Q ss_pred EEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhc
Q 023305 96 VLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 150 (284)
Q Consensus 96 V~SHpqal~Qc~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~y 150 (284)
|.... .-.....+.+.. ++..+.+.|..++.+++..+. -.|++.....+..+
T Consensus 113 i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~~ 165 (237)
T 3kzg_A 113 IGVRK-GTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQ--VDASLMDYEAAKYW 165 (237)
T ss_dssp EEEET-TSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHHH
T ss_pred EEEec-CCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCC--CCEEEeCcHHHHHH
Confidence 44332 223333444443 567888999999999998863 34777776655543
No 64
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=72.75 E-value=4.1 Score=36.80 Aligned_cols=43 Identities=12% Similarity=-0.057 Sum_probs=35.8
Q ss_pred CCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHhCCCCeEEEee
Q 023305 6 PGSFSEDAALKAYP----KCETVPCDEFEDTFKAVELWLADKAVLPI 48 (284)
Q Consensus 6 ~GtfS~~Aa~~~f~----~~~~~~~~s~~~v~~av~~~~~d~gvvPi 48 (284)
.||-+|.++..+.. +.+.+|+.+..+++.+|..|++|.++...
T Consensus 147 ~Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~aL~~G~VD~~~~~~ 193 (312)
T 2f5x_A 147 IGAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQT 193 (312)
T ss_dssp TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEH
T ss_pred CCcHHHHHHHHHHHHHCCCeEEeccCChHHHHHHHHcCCccEEEech
Confidence 37999999876542 34578999999999999999999998864
No 65
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=72.62 E-value=35 Score=28.51 Aligned_cols=113 Identities=18% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC----CcCCcc-
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI----KADQLK- 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~----~l~~i~- 94 (284)
+.++++..++.++++++.+|++|+.. ++-.+-+- ...+.. ..-+......++++++. +++|++
T Consensus 72 ~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~t~~r----------~~~~~f-s~p~~~~~~~l~~~~~~~~i~~~~dL~g 139 (267)
T 3mpk_A 72 DFEIIGVDTVEELIAKLRSGEADMAG-ALFVNSAR----------ESFLSF-SRPYVRNGMVIVTRQDPDAPVDADHLDG 139 (267)
T ss_dssp EEEEEEESSHHHHHHHHHHTSCSEEE-EEECCGGG----------TTTEEE-CSCSEEECEEEEEESSTTSCSSGGGCTT
T ss_pred eEEEEecCCHHHHHHHHHCCCccEEe-cccCChhh----------hcceEe-chhhccCceEEEEECCCCCCCCHHHHCC
Confidence 35788889999999999999999853 43322111 001111 11122334556665541 334442
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 95 -RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 95 -~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
+|....-. . -..+|.+. +++.+.+.|..++.+++..+. -.|+|+....+.
T Consensus 140 ~~i~v~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~l~~L~~Gr--vDa~i~~~~~~~ 192 (267)
T 3mpk_A 140 RTVALVRNS-A-AIPLLQRRYPQAKVVTADNPSEAMLMVANGQ--ADAVVQTQISAS 192 (267)
T ss_dssp CEEEEETTC-T-HHHHHHHHCTTSEEEEESSHHHHHHHHHHTS--CSEEEEEHHHHH
T ss_pred CEEEEeCCc-h-hHHHHHHhCCCcEEEEeCCHHHHHHHHHcCC--CCEEEecHHHHH
Confidence 44433221 1 23456553 678888999999999999863 347777765554
No 66
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=71.70 E-value=43 Score=29.29 Aligned_cols=150 Identities=9% Similarity=-0.014 Sum_probs=81.9
Q ss_pred cCCCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHhCCCCeEEEeeeecccceee------------
Q 023305 3 QGLPGSFSEDAALKAY--------PKCETVPCDE-----FEDTFKAVELWLADKAVLPIENSSSGSIH------------ 57 (284)
Q Consensus 3 lGp~GtfS~~Aa~~~f--------~~~~~~~~~s-----~~~v~~av~~~~~d~gvvPiENS~~G~V~------------ 57 (284)
.-|+|+..+.++..+. ++.++..+++ -.+++++|..|.+|++++..-+ ..|.+.
T Consensus 9 ~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~-~~~~~p~~~~~~lPfl~~ 87 (301)
T 2pfy_A 9 EQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSA-LGNEDPLFEIDSVPFLAS 87 (301)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGG-GTTTCGGGGGGGSTTTSC
T ss_pred cCCCCcchhHHHHHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhh-hhccCcccccccCCcccC
Confidence 4577887777776542 2244544444 3799999999999999886321 111110
Q ss_pred -------------ccc-cccccCCeEEEEEEEEeeeeEeeecCC-CCcCCcc--EEEecHHHHHHHHHHHHhcCCeEEec
Q 023305 58 -------------RNY-DLLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLTQLGVARENV 120 (284)
Q Consensus 58 -------------~t~-d~L~~~~l~I~~E~~l~I~~~L~~~~~-~~l~~i~--~V~SHpqal~Qc~~fl~~~~~~~~~~ 120 (284)
+.+ +.+.+.++++.+-...+-.+ +..++. .+++|++ +|..- ... -..+++..|+..++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lGa~pv~~ 163 (301)
T 2pfy_A 88 SFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQG-IYTKKPVAALADLKGTRFRAY-SAS--TSHMAALMGAVPTTV 163 (301)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEEC-SHH--HHHHHHHTTSEEEEC
T ss_pred CHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCCCcc-eecCCCCCCHHHhCCCEEeec-Chh--HHHHHHHcCCcceec
Confidence 001 12234578877654444333 444333 3566776 66653 222 246888889887765
Q ss_pred CCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeecccc
Q 023305 121 DDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQ 160 (284)
Q Consensus 121 ~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~ 160 (284)
+.++.-..+..+ .- .|+..+.......++.=+.+.+.
T Consensus 164 -~~~E~y~ALq~G-~v-Dg~~~~~~~~~~~~~~ev~k~~~ 200 (301)
T 2pfy_A 164 -QTPEVPQAFSTG-VI-DAMLTSPATGVDSQAWDYVKYYY 200 (301)
T ss_dssp -CGGGHHHHHHTT-SC-SBEEECHHHHHHTTGGGTCCEEE
T ss_pred -cHHHHHHHHhcc-ee-eeEecCccccccccHHHHhhhhc
Confidence 334444444444 23 35566665554445533333333
No 67
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=71.60 E-value=5.7 Score=32.10 Aligned_cols=42 Identities=5% Similarity=0.008 Sum_probs=33.3
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEee
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPI 48 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPi 48 (284)
+.|+..+....+. +.+++.+.+..+++++|.+|++|.++.+-
T Consensus 122 ~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~~~~~ 163 (233)
T 1ii5_A 122 VRDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFDR 163 (233)
T ss_dssp ETTSHHHHHHHHT--TCEEEEESSHHHHHHHHHTTSCSEEEEEH
T ss_pred ECCccHHHHHHHc--CCCeEEcCCHHHHHHHHHcCCccEEEeCH
Confidence 4566666555543 56789999999999999999999988763
No 68
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=70.98 E-value=10 Score=32.11 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=27.3
Q ss_pred EecCCCchHHHHHHHHHhCCceeeeeeeeeC
Q 023305 192 TLDEGPGVLFKALAVFALREINLTKIESRPQ 222 (284)
Q Consensus 192 ~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~ 222 (284)
.++++||.+.++++.|+++|||+-.|-.-++
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s 72 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVS 72 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCC
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccc
Confidence 5789999999999999999999999965443
No 69
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=70.49 E-value=21 Score=29.17 Aligned_cols=112 Identities=8% Similarity=0.038 Sum_probs=68.6
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCCcCCcc-EEEe
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLK-RVLS 98 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~l~~i~-~V~S 98 (284)
+.++++. ++..++.++.+|++|.++-++-. |-+. ...+... .-++.....++++++. ++|++ +|..
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------t~~r--~~~~~fs-~p~~~~~~~~~~~~~~-~~dL~g~igv 111 (232)
T 3i6v_A 45 TCEWVKN-DWDSIIPNLVSGNYDTIIAGMSI--------TDER--DEVIDFT-QNYIPPTASSYVATSD-GADLSGIVAA 111 (232)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBC--------CHHH--HTTSEEE-EEEECCCEEEEEESST-TCCTTSEEEE
T ss_pred ceEEEEC-CHHHHHHHHHCCCCCEEEeCCcC--------CHHH--HhhcCcc-cccccCCeEEEEECCC-hHHhCCCEEE
Confidence 4567775 89999999999999986543321 2111 1122222 2345556677776652 33332 4433
Q ss_pred cHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 99 HPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 99 Hpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
-.- .. -..+|.+.+++.+.+.|..++.+++..+. -.|+|+....+.
T Consensus 112 ~~g-~~-~~~~l~~~~~~~~~~~~~~~~~~~L~~Gr--vDa~i~~~~~~~ 157 (232)
T 3i6v_A 112 QTA-TI-QAGYIAESGATLVEFATPEETIAAVRNGE--ADAVFADRDYLV 157 (232)
T ss_dssp ETT-SH-HHHHHHHSSSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHH
T ss_pred ecC-ch-HHHHHHhcCCeEEEeCCHHHHHHHHHcCC--cCEEEEChHHHH
Confidence 222 12 23466666788889999999999999863 347777766554
No 70
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=70.23 E-value=8.1 Score=34.49 Aligned_cols=43 Identities=16% Similarity=-0.017 Sum_probs=35.6
Q ss_pred CCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHhCCCCeEEEee
Q 023305 6 PGSFSEDAALKAYP----KCETVPCDEFEDTFKAVELWLADKAVLPI 48 (284)
Q Consensus 6 ~GtfS~~Aa~~~f~----~~~~~~~~s~~~v~~av~~~~~d~gvvPi 48 (284)
.||-+|.++..+.. +.+.+|+.+..+++.+|..|++|.++...
T Consensus 138 ~Gs~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~~al~~G~vD~~~~~~ 184 (301)
T 2qpq_A 138 NGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTA 184 (301)
T ss_dssp TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSCEEEEH
T ss_pred CCcHHHHHHHHHHHHhCCCeEEeccCChHHHHHHHHCCCccEEEEcH
Confidence 37999998876542 34578999999999999999999998864
No 71
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=70.19 E-value=24 Score=27.99 Aligned_cols=113 Identities=11% Similarity=0.097 Sum_probs=65.6
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC----CcCCcc--
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI----KADQLK-- 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~----~l~~i~-- 94 (284)
.++++. ++.++++++.+|++|.++-++--+-+. ...+... .-+.....+++++++. +++|++
T Consensus 43 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r----------~~~~~~s-~p~~~~~~~l~~~~~~~~~~~~~dL~g~ 110 (227)
T 3tql_A 43 CTISNQ-PWDSLIPSLKLGKFDALFGGMNITTAR----------QKEVDFT-DPYYTNSVSFIADKNTPLTLSKQGLKGK 110 (227)
T ss_dssp EEEEEC-CHHHHHHHHHHTSCSEECSSCBCCTTG----------GGTEEEC-SCSBCCEEEEEEETTSCCCCSTTTTTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCCCEEEecCcCCHhH----------Hhheecc-cceeccceEEEEeCCCCCCCCHHHhCCC
Confidence 567775 899999999999999876433211111 0011110 1122334556665542 345553
Q ss_pred EEEecHHHHHHHHHHHHhc--C-CeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 95 RVLSHPQALASSDIVLTQL--G-VARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 95 ~V~SHpqal~Qc~~fl~~~--~-~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
+|....-... ..+|.+. . +..+...|..++.+++..+ .-.|+++....+..
T Consensus 111 ~v~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 164 (227)
T 3tql_A 111 IIGVQGGTTF--DSYLQDSFGNSITIQRYPSEEDALMDLTSG--RVDAVVGDTPLIKQ 164 (227)
T ss_dssp EEEEETTSHH--HHHHHHHHGGGSEEEEESSHHHHHHHHTTT--SSSEEESCHHHHHH
T ss_pred EEEEEecccH--HHHHHHhccccceEEEcCCHHHHHHHHHcC--CcCEEEeChHHHHH
Confidence 4544332221 3455543 3 7788899999999999876 34578888766654
No 72
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=68.21 E-value=13 Score=30.66 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=39.9
Q ss_pred EecCCCchHHHHHHHHHhCCceeeeeeeeeCCC-CCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHHH
Q 023305 192 TLDEGPGVLFKALAVFALREINLTKIESRPQRK-RPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQ 266 (284)
Q Consensus 192 ~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~-~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L~ 266 (284)
.++++||.+.++++.|+++|||+-.|..-.+.. .. .....|.|+-+ +-.+..++|++++
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g-------------~~~isftv~~~---~~~~a~~~L~~~~ 82 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDG-------------KTDITFTCSRD---VGPAAVEKLDSLR 82 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTC-------------EEEEEEEEETT---THHHHHHHHHHTH
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCC-------------ccEEEEEEehh---HHHHHHHHHHHHH
Confidence 468999999999999999999999886432210 10 12467887742 1245566666654
No 73
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=67.51 E-value=14 Score=29.94 Aligned_cols=88 Identities=8% Similarity=0.016 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHh---hCCC--Ccee-ecCCHHHHHHHHHhCCCCeEEEeeeecccceeecccc-cccc---CCeEEEEEE
Q 023305 5 LPGSFSEDAALK---AYPK--CETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYD-LLLR---HRLHIVGEV 74 (284)
Q Consensus 5 p~GtfS~~Aa~~---~f~~--~~~~-~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d-~L~~---~~l~I~~E~ 74 (284)
+.|+..+....+ .++. .++. ...+.++++++|.+|++|+.+..-. ++. ++.+ .++.+.+..
T Consensus 121 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 191 (246)
T 4eq9_A 121 VQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKI---------GVETVIKNQGLDNLKVIELP 191 (246)
T ss_dssp CTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHHTCTTEEEEECC
T ss_pred ecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHH---------HHHHHHHhCCCCCceEecCc
Confidence 467777776666 4554 3444 3369999999999999999988632 111 1111 246666643
Q ss_pred EEeee-eEeeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 75 QLAAN-FCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 75 ~l~I~-~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
..... .+++.+++ +|+-..+..++|.+
T Consensus 192 ~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~ 219 (246)
T 4eq9_A 192 SDQQPYVYPLLAQG-----------QDELKSFVDKRIKE 219 (246)
T ss_dssp CSSCCEECCEEETT-----------CHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCC-----------CHHHHHHHHHHHHH
Confidence 33222 34444432 56667777777765
No 74
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=66.05 E-value=6.9 Score=31.72 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=27.7
Q ss_pred EEEEEE-ecCCCchHHHHHHHHHhCCceeeeeee
Q 023305 187 TSIVFT-LDEGPGVLFKALAVFALREINLTKIES 219 (284)
Q Consensus 187 tsi~f~-~~~~pGaL~~~L~~F~~~~INLt~IeS 219 (284)
+.|.+. ++++||.+.++++.|+++|||+-.|-+
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 444443 789999999999999999999998865
No 75
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=65.13 E-value=53 Score=26.47 Aligned_cols=111 Identities=11% Similarity=-0.023 Sum_probs=62.4
Q ss_pred hCCCCcee-ecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCCc---CC
Q 023305 17 AYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKA---DQ 92 (284)
Q Consensus 17 ~f~~~~~~-~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~l---~~ 92 (284)
.+|+.++. -..+-.++.+.+.+|++|+|++.... . + +..+.......++++.++-.+ ..
T Consensus 52 ~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~~~--~-------~--------~~~~~l~~~~~~~v~~~~~~l~~~~~ 114 (238)
T 3onm_A 52 LYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKV--D-------S--------HPHVILRTSPTLWYCSVDYQFQPGEP 114 (238)
T ss_dssp HCTTCCEEEEECCHHHHHHHHHHTSCSEEEECSCC----------C--------CCEEEEEEECEEEEEETTCCCCTTSC
T ss_pred HCCCcEEEEEECCHHHHHHHHHCCCccEEEEecCC--C-------C--------cceEEeecCCEEEEEcCCCCcccCCC
Confidence 36776653 35667889999999999999986431 1 1 112222333445555544322 23
Q ss_pred ccEEEe-cHH-HHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEEcchhHH
Q 023305 93 LKRVLS-HPQ-ALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAA 147 (284)
Q Consensus 93 i~~V~S-Hpq-al~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa 147 (284)
+.-|.- +.. .......|+.+.++. ...++|...+.++|+.+ ...|+.+...+
T Consensus 115 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Giailp~~~~ 171 (238)
T 3onm_A 115 VPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAG---LGVTARPIEMM 171 (238)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHTT---SCBEEEEGGGC
T ss_pred cceEECCCchhHHHHHHHHHHHCCCCeEEEEEeCCHHHHHHHHHcC---CeEEEechHHc
Confidence 333332 222 234456677766543 24567777777777765 23566666544
No 76
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=64.68 E-value=49 Score=27.51 Aligned_cols=114 Identities=14% Similarity=0.146 Sum_probs=63.8
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc--
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK-- 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~-- 94 (284)
+.++++.+ +.++++++.+|++|+++-++.-+ .+ ....+... .-+......++++++. +++|++
T Consensus 81 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~--------~~--r~~~~~~s-~p~~~~~~~l~~~~~~~i~~~~dL~g~ 148 (272)
T 2pvu_A 81 DYELKNIG-WDPLFASLQSKEVDMGISGITIT--------DE--RKQSYDFS-DPYFEATQVILVKQGSPVKNALDLKGK 148 (272)
T ss_dssp CEEEEECC-HHHHHHHHHHTSSSEECSSCBCC--------HH--HHTTEEEC-SCCEEECEEEEEETTCCCCSGGGGTTS
T ss_pred ceEEEECC-HHHHHHHHhCCCCCEEEeCCcCC--------HH--HHhcCccc-hhhhccceEEEEECCCCCCCHHHhCCC
Confidence 35677776 99999999999999986432211 11 01111111 1122334556666553 334442
Q ss_pred EEEecHHHHHHHHHHHHhc---CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 95 RVLSHPQALASSDIVLTQL---GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 95 ~V~SHpqal~Qc~~fl~~~---~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
+|....-. .. ..+|.+. ....+.+.+..++.+++..+. -.|++.....+..
T Consensus 149 ~i~~~~g~-~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~ 202 (272)
T 2pvu_A 149 TIGVQNAT-TG-QEAAEKLFGKGPHIKKFETTVVAIMELLNGG--VDAVITDNAVANE 202 (272)
T ss_dssp CEEEETTS-HH-HHHHHHHHCSSTTEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred eEEEEcCc-hH-HHHHHHhcCCCCeEEEcCCHHHHHHHHHcCC--ccEEEeCHHHHHH
Confidence 44443221 11 2345543 466777889999999998763 3467776655543
No 77
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=63.85 E-value=55 Score=26.19 Aligned_cols=122 Identities=15% Similarity=0.029 Sum_probs=62.0
Q ss_pred hCCCCceee-cCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCCcCCcc-
Q 023305 17 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLK- 94 (284)
Q Consensus 17 ~f~~~~~~~-~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~l~~i~- 94 (284)
.+|+.++.. ..+-.++.+.+.+|++|+|++.......+.. ...|.+.++.+ ..+-+|-|...+..+++|+.
T Consensus 55 ~~P~v~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~---~~~l~~~~~~~----v~~~~hpl~~~~~i~~~dl~~ 127 (238)
T 2hxr_A 55 RYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELE---AIPLLTESLAL----VVAQHHPLAVHEQVALSRLHD 127 (238)
T ss_dssp HCTTSCEEEEECCHHHHHHHHHTTSCSEEEEESSCCCTTEE---EEEEEEEEEEE----EEETTSGGGGCSEECGGGGGG
T ss_pred hCCCcEEEEEECCHHHHHHHHHcCCCcEEEEcCCCCcccce---eeeeccCcEEE----EEcCCCcccccCCCCHHHHhc
Confidence 467766543 4567889999999999999986321111100 00111111111 12223333322223344443
Q ss_pred --EEEe-cHHH-HHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 95 --RVLS-HPQA-LASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 95 --~V~S-Hpqa-l~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
-|.. .... ......|+.+.++. ...++|...+.++|+.+. ..++.+...++
T Consensus 128 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~---Gi~~lp~~~~~ 185 (238)
T 2hxr_A 128 EKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTS---LSTLLPAAIAT 185 (238)
T ss_dssp CEEEEECTTSHHHHHHHHHHHHTTCCCEEEEEESCHHHHHHHHHHSS---CBEEEETHHHH
T ss_pred CCeEEecCCccHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcCC---cEEEecHHHhc
Confidence 3332 2222 23355666665543 245677777778887752 35677766554
No 78
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=63.08 E-value=38 Score=27.71 Aligned_cols=114 Identities=12% Similarity=0.138 Sum_probs=66.3
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCC--C---CcCCcc
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG--I---KADQLK 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~--~---~l~~i~ 94 (284)
+.++++. ++.++++++.+|++|+++.++..+ .+. ...+.. ..-+......++++++ . +++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~--------~~r--~~~~~~-s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 149 (269)
T 4i62_A 82 ELELSPM-SFDNVLASVQSGKADLAISGVSKT--------DER--SKVFDF-STPYYTAKNKLIVKKSDLATYQSVNDLA 149 (269)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSCSEECSSCBCC--------HHH--HTTEEE-CSCCEECCEEEEEEGGGTTTCSSGGGGC
T ss_pred ceEEEEc-CHHHHHHHHhCCCccEEecCCcCC--------HhH--hhceec-ccchhhcceEEEEECCccccccCHHHhC
Confidence 3678888 999999999999999976433211 110 011111 1112233345555543 1 344553
Q ss_pred --EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 95 --RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 95 --~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
+|....-.. ...++.+. +...+...|..++.+++..+. -.|++.....+..
T Consensus 150 g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 204 (269)
T 4i62_A 150 QKKVGAQKGSI--QETMAKDLLQNSSLVSLPKNGNLITDLKSGQ--VDAVIFEEPVAKG 204 (269)
T ss_dssp -CEEEEETTSH--HHHHHHHHCTTSEEEEESCHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred CCeEEEecCch--HHHHHHHhCCCCcEEecCCHHHHHHHHHcCC--CCEEEeChHHHHH
Confidence 555433222 24566653 577888899999999998863 3477776665543
No 79
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=62.83 E-value=7.1 Score=31.31 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=38.5
Q ss_pred cCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHHHh
Q 023305 194 DEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQE 267 (284)
Q Consensus 194 ~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L~~ 267 (284)
++.||.+.++++.|+++|||+-.|-+-+ -...|.|+= .+ ...+++++|++
T Consensus 29 ~~~~g~~~~if~~La~~~I~vd~I~~s~-------------------~~Isf~v~~----~~-~~~~il~~l~~ 78 (157)
T 3mah_A 29 LLSWHFMRKLFEIFEFYQEPVDMVATSE-------------------VGVSLTIDN----DK-NLPDIVRALSD 78 (157)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSCEECCS-------------------SEEEEEESC----CT-THHHHHHHHTT
T ss_pred CCchhHHHHHHHHHHHcCCCEEEEEecC-------------------CEEEEEECC----hH-HHHHHHHHHhc
Confidence 5789999999999999999999887532 246788872 12 56778888864
No 80
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=62.47 E-value=20 Score=28.78 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=25.2
Q ss_pred ecCCCchHHHHHHHHHhCCceeeeeeee
Q 023305 193 LDEGPGVLFKALAVFALREINLTKIESR 220 (284)
Q Consensus 193 ~~~~pGaL~~~L~~F~~~~INLt~IeSR 220 (284)
.+++||.+.++++.|+++|||+-.|-.-
T Consensus 24 ~~~~~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 24 IPDQPGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp EECSTTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEEcC
Confidence 5789999999999999999999988653
No 81
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=61.73 E-value=49 Score=26.98 Aligned_cols=114 Identities=10% Similarity=0.066 Sum_probs=65.8
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC----CcCCcc-
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI----KADQLK- 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~----~l~~i~- 94 (284)
+.++++. ++.++++++.+|++|+++-++.-+-+.. + .+... .-+......++++++. +++|++
T Consensus 63 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~-----~-----~~~~s-~p~~~~~~~~~~~~~~~~i~~~~dL~g 130 (249)
T 4f3p_A 63 TYKIQPM-DFAGLIPALQTQNIDVALSGMTIKEERR-----K-----AIDFS-DPYYDSGLAAMVQANNTTIKSIDDLNG 130 (249)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSCSEEEEEEECCHHHH-----T-----TEEEC-SCCEEEEEEEEEETTCCSCCSSGGGTT
T ss_pred ceEEEec-CHHHHHHHHHCCCCCEEEeccccCHHHH-----c-----Cccee-cceeeccEEEEEECCCCCcCChHHhCC
Confidence 3567775 6799999999999999765443221110 0 11111 1122334555655442 344442
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 95 -RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 95 -~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
+|..-.- ... ..||.+. ....+.+.|..++.+++..+ .-.|+|+....+..
T Consensus 131 ~~i~v~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 184 (249)
T 4f3p_A 131 KVIAAKTG-TAT-IDWIKAHLKPKEIRQFPNIDQAYLALEAG--RVDAAMHDTPNVLF 184 (249)
T ss_dssp SEEEEETT-SHH-HHHHHHHCCCSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CEEEEeCC-ChH-HHHHHhcCCCceEEEcCCHHHHHHHHHcC--CeeEEEeCcHHHHH
Confidence 4443222 222 3466653 57788889999999999986 34477777665543
No 82
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=61.72 E-value=46 Score=28.43 Aligned_cols=88 Identities=10% Similarity=-0.117 Sum_probs=53.0
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCc--cE
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQL--KR 95 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i--~~ 95 (284)
+++++..+-.+.++++.+|++|+++......+. ..-...++.+++.....-...|+++++. +++|+ |+
T Consensus 36 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~s~~DL~Gk~ 108 (302)
T 3ix1_A 36 VDIVFPTNPTDPIQLTASGAIPLALSYQPDVIL-------ARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGLT 108 (302)
T ss_dssp EEEECCSSTTHHHHHHHHTSCSEEEECHHHHHH-------HHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTSE
T ss_pred EEEecCCCCchHHHHHHCCCCCEEecCHHHHHH-------HHHCCCCEEEEEEEeccCCEEEEEECCCCCCChHHcCCCE
Confidence 577777877799999999999999864221110 1112346777776665445777776543 34555 36
Q ss_pred EEecHH--HHHHHHHHHHhcCC
Q 023305 96 VLSHPQ--ALASSDIVLTQLGV 115 (284)
Q Consensus 96 V~SHpq--al~Qc~~fl~~~~~ 115 (284)
|...+- .....+.+|++.++
T Consensus 109 i~~~~~~~~~~~~~~~l~~~Gl 130 (302)
T 3ix1_A 109 VGYPGIPVNEPILKTMVEAAGG 130 (302)
T ss_dssp EEECSCTTHHHHHHHHHHHTTC
T ss_pred EEeCCCcchHHHHHHHHHHcCC
Confidence 654332 22335667776553
No 83
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=61.17 E-value=35 Score=27.97 Aligned_cols=114 Identities=10% Similarity=0.049 Sum_probs=69.6
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEE--eeeeEeeecCC-C---CcCCc
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL--AANFCLLALPG-I---KADQL 93 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l--~I~~~L~~~~~-~---~l~~i 93 (284)
+.++++. ++.++++++.+|++|+++..+. .+-+ ....+.. .-+. .....++.+++ . +++|+
T Consensus 71 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~--r~~~~~~--~p~~~~~~~~~~~~~~~~~~i~~~~dL 137 (268)
T 3qax_A 71 QLEVREF-AFDALILNLKKHRIDAILAGMS--------ITPS--RQKEIAL--LPYYGDEVQELMVVSKRSLETPVLPLT 137 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSSSEECSCCB--------CCHH--HHTTSEE--EEEECCCBCEEEEEEETTSCSCCCCGG
T ss_pred eEEEEec-CHHHHHHHHhCCCccEEeecCc--------cCHh--Hhcceee--ecceecccceEEEEECCCCCCCCHHHh
Confidence 3567787 8999999999999998753322 1111 1122323 3344 55567777654 2 44555
Q ss_pred c--EEEecHHHHHHHHHHHHhc-CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhc
Q 023305 94 K--RVLSHPQALASSDIVLTQL-GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 150 (284)
Q Consensus 94 ~--~V~SHpqal~Qc~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~y 150 (284)
+ +|....-. .. ..++.+. +...+...|..++.+++..+. -.|++.....+..+
T Consensus 138 ~g~~i~~~~g~-~~-~~~l~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 138 QYSSVAVQTGT-YQ-EHYLLSQPGICVRSFDSTLEVIMEVRYGK--SPVAVLEPSVGRVV 193 (268)
T ss_dssp GSSCEEEETTS-HH-HHHHHTSTTCCEEEESCHHHHHHHHHTTS--SSEEEECHHHHHHH
T ss_pred CCCEEEEecCc-HH-HHHHHhCCCceEEecCCHHHHHHHHHcCC--CCEEEecHHHHHHH
Confidence 3 45443322 22 3455543 677888889999999998763 34777777666554
No 84
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=60.89 E-value=43 Score=26.87 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=62.1
Q ss_pred hCCCCceee-cCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCCcCCcc-
Q 023305 17 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLK- 94 (284)
Q Consensus 17 ~f~~~~~~~-~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~l~~i~- 94 (284)
.+|+.++.- ..+..++.++|.+|++|+|++.......+. ....|.+.++.+ .+|-.|-|.. +..+++|+.
T Consensus 33 ~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~~~~~l---~~~~l~~~~~~~----v~~~~hpla~-~~i~l~dL~~ 104 (218)
T 2y7p_A 33 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGF---FQRRLFRHRYVC----MFRKDHPSAK-SPMSLKQFTE 104 (218)
T ss_dssp HCTTCEEEEECCCTTTHHHHHHHTSSCEEEECCTTCCTTE---EEEEEEEECEEE----EEETTCSSCC-SSCCHHHHHH
T ss_pred HCCCCEEEEEeCCcccHHHHHhCCCceEEEecCCCCCcce---eEEEeeeccEEE----EEcCCCCCCC-CCCCHHHHhh
Confidence 467766533 345578899999999999997422111110 011122222222 2344455543 334444443
Q ss_pred --EEEe-cH-HHHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 95 --RVLS-HP-QALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 95 --~V~S-Hp-qal~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
-|.. .+ ....+..+++.+.++. ...++|......+|+.+. ..||.+..++.
T Consensus 105 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~g~---Giailp~~~~~ 162 (218)
T 2y7p_A 105 LEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTD---LIATVPQRFAV 162 (218)
T ss_dssp SEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTSS---CBEEEEHHHHH
T ss_pred CCCEEeecCCCccCHHHHHHHhcCCcceEEEEcCcHHHHHHHHhCCC---EEEEcHHHHHH
Confidence 2322 11 1223455566665543 245667777777887752 35666665443
No 85
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=60.88 E-value=80 Score=27.07 Aligned_cols=113 Identities=15% Similarity=0.034 Sum_probs=68.5
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccc-cCCeEEEEEEEEeeeeEeeecCCC-----CcCCcc
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RHRLHIVGEVQLAANFCLLALPGI-----KADQLK 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~-~~~l~I~~E~~l~I~~~L~~~~~~-----~l~~i~ 94 (284)
+++++..+..+++++|.+|++|+++.+.... +.... ..++.+++.....-...++++++. +++|++
T Consensus 66 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL~ 137 (346)
T 3qsl_A 66 VSIADFAGGSKALQAVVGGSADVVSGAFEHT--------LSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADLK 137 (346)
T ss_dssp EEEEECSSHHHHHHHHHTTSCSEEEEETHHH--------HHHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCCSGGGGT
T ss_pred EEEEecCChHHHHHHHHCCCCCEEccchHHH--------HHHHhCCCCeEEEEecccCCCcEEEEecCcccCCCChHHcC
Confidence 5778889999999999999999998765422 11111 234555554443334456665532 445553
Q ss_pred --EEEec-HHH--HHHHHHHHHhcCC-----eEEecCCHHHHHHHHHhcCCCCeEEEcc
Q 023305 95 --RVLSH-PQA--LASSDIVLTQLGV-----ARENVDDTASAAQYVASNGLRDAGAVAS 143 (284)
Q Consensus 95 --~V~SH-pqa--l~Qc~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~~~~~~aAI~s 143 (284)
+|... +-. ....+.+|++.++ +.+...+.+++...+..+. -+ |++..
T Consensus 138 Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~-vD-a~~~~ 194 (346)
T 3qsl_A 138 GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQ-ID-AISNT 194 (346)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTS-CS-EEEEE
T ss_pred CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCC-cc-EEEec
Confidence 66654 322 3344677777654 4567767778888777753 34 44433
No 86
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=60.64 E-value=83 Score=27.17 Aligned_cols=114 Identities=18% Similarity=0.022 Sum_probs=67.5
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEE-eeeeEeeecCCC---CcCCcc--
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQL-AANFCLLALPGI---KADQLK-- 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l-~I~~~L~~~~~~---~l~~i~-- 94 (284)
++++++.+..++++++.+|++|++++..... ........++.+++-... +-...++++++. +++|++
T Consensus 60 v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~-------~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s~I~s~~DLkGk 132 (324)
T 3ksx_A 60 ITWVEFPAGPQLLEALNVGSIDLGGAGDIPP-------LFAQAAGADLLYVGWVPPTPKAETILVPSKSALRTVADLKGK 132 (324)
T ss_dssp EEEEEESSHHHHHHHHHTTSCSEEEEESHHH-------HHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGGTTC
T ss_pred eEEEECCCHHHHHHHHHCCCCCEEeecCHHH-------HHHHhcCCCEEEEEEecCCCCceEEEEeCCCCCCCHHHhCCC
Confidence 5778889999999999999999998643211 111112346777765432 234667777653 445553
Q ss_pred EEEecHHH--HHHHHHHHHhcCC-----eEEecCCHHHHHHHHHhcCCCCeEEEcc
Q 023305 95 RVLSHPQA--LASSDIVLTQLGV-----ARENVDDTASAAQYVASNGLRDAGAVAS 143 (284)
Q Consensus 95 ~V~SHpqa--l~Qc~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~~~~~~aAI~s 143 (284)
+|..-+-. ......+|++.++ +.+.. +.+++...+..+ .-+.+.+..
T Consensus 133 ~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G-~vDa~~~~~ 186 (324)
T 3ksx_A 133 RIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAG-QVDAWAIWD 186 (324)
T ss_dssp EEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTT-CCSEEEEET
T ss_pred EEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcC-CCCEEEEcc
Confidence 66554322 2234557777654 34444 677777777765 344433433
No 87
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=60.62 E-value=88 Score=27.46 Aligned_cols=167 Identities=8% Similarity=-0.007 Sum_probs=89.8
Q ss_pred ccCCCCcHHHHHHHhhC------CCCceeecCCH-----HHHHHHHHhCCCCeEEEeeee------------------c-
Q 023305 2 MQGLPGSFSEDAALKAY------PKCETVPCDEF-----EDTFKAVELWLADKAVLPIEN------------------S- 51 (284)
Q Consensus 2 ylGp~GtfS~~Aa~~~f------~~~~~~~~~s~-----~~v~~av~~~~~d~gvvPiEN------------------S- 51 (284)
...|+|+..+.++.+|. ++.++..+++- .+++++|..|.+|++++..-+ +
T Consensus 7 ~~~~~~~~~~~~~~~fa~~v~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl~~~~ 86 (316)
T 2vpn_A 7 HEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPYLMPTD 86 (316)
T ss_dssp CSSCTTSHHHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTTCSCSS
T ss_pred cCCCCCCHHHHHHHHHHHHhhCCCeEEEEEecCCCCCChHHHHHHHhCCCceEEeecchhhhccCcchhheecCeecCCH
Confidence 34588888888877642 34555555553 899999999999999876211 0
Q ss_pred c-------cc--eeecc-ccccccCCeEEEEEEEEeeeeEeeecCC-CCcCCcc--EEEecHHHHHHHHHHHHhcCCeEE
Q 023305 52 S-------SG--SIHRN-YDLLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLTQLGVARE 118 (284)
Q Consensus 52 ~-------~G--~V~~t-~d~L~~~~l~I~~E~~l~I~~~L~~~~~-~~l~~i~--~V~SHpqal~Qc~~fl~~~~~~~~ 118 (284)
. .| .+.+. .+.+.+.++++.+-......+.. .++. .+++|++ +|..-+-.. -..+++..|+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~g~~~~~-~~~pI~s~~DlkG~KiR~~~~~~--~~~~~~~lGa~pv 163 (316)
T 2vpn_A 87 MDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMVVT-ADEPITSPEDFDNKKIRTMTNPL--LAETYKAFGATPT 163 (316)
T ss_dssp HHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEEEE-ESSCCCSGGGGTTCEEEECSCHH--HHHHHHHHTCEEE
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecCCceEEe-cCCCCCChHHhCCCEEEeCCCHH--HHHHHHHcCCeee
Confidence 0 01 11111 11223467888876554444333 4332 3667776 677643222 2468888898876
Q ss_pred ecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccCCCCCee-EEEEEee
Q 023305 119 NVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNIT-RFLVLAR 174 (284)
Q Consensus 119 ~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~T-RF~vl~~ 174 (284)
+..- ++.-..+..+ .- .|+..+.....-.++.=+.+.+.+..+..+ -++++.+
T Consensus 164 ~m~~-~Evy~ALq~G-~V-Dg~~~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~ 217 (316)
T 2vpn_A 164 PLPW-GEVYGGLQTG-II-DGQENPIFWIESGGLYEVSPNLTFTSHGWFTTAMMANQ 217 (316)
T ss_dssp ECCG-GGHHHHHHHT-SC-SEEEEEHHHHHHTTGGGTCCEEEECCCCEEEEEEEEEH
T ss_pred ecCH-HHHHHHHHcC-Cc-ceeeCCHHHHHhcCHHHhhhhheeccccccceEEEEcH
Confidence 5532 3333334443 23 355555555444455433444444334443 3444443
No 88
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=59.69 E-value=81 Score=26.78 Aligned_cols=122 Identities=18% Similarity=0.113 Sum_probs=63.2
Q ss_pred hCCCCceee-cCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeee-cCC-CCcCCc
Q 023305 17 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLA-LPG-IKADQL 93 (284)
Q Consensus 17 ~f~~~~~~~-~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~-~~~-~~l~~i 93 (284)
.+|+.++.. ..+..++.+.+.+|++|+|++.......|... ..|.+.++. +..+-.|-|.. ... .+++|+
T Consensus 115 ~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~---~~L~~~~~~----~v~~~~hpla~~~~~~i~~~dL 187 (312)
T 2h9b_A 115 AHPNLRIELYEMGTKAQTEALKEGRIDAGFGRLKISDPAIKH---SLLRNERLM----VAVHASHPLNQMKDKGVHLNDL 187 (312)
T ss_dssp TCTTCEEEEEECCHHHHHHHHHTTSCSEEEESSCCCCTTEEE---EEEEEEEEE----EEEETTSGGGGGTTTCBCGGGS
T ss_pred HCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeCCCCCCCceE---EEeecceEE----EEEcCCCccccccCCCCCHHHH
Confidence 357766533 34678999999999999999854321111100 111111121 12233444433 222 334444
Q ss_pred ---cEEEecH----HHHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 94 ---KRVLSHP----QALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 94 ---~~V~SHp----qal~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
.-|.-.+ ....+...|+.+.++. ...++|...+.++|+.+. ..|+.+...++
T Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~---Gia~lp~~~~~ 249 (312)
T 2h9b_A 188 IDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGE---GISLVPASTQS 249 (312)
T ss_dssp TTSEEEECCCSSSSSHHHHHHHHHHTTTCCCSEEEECSSHHHHHHHHHTTS---CBEEEEGGGGG
T ss_pred cCCCEEEeCCCCCchHHHHHHHHHHHcCCCCCceEEecCHHHHHHHHHcCC---cEEEecchhhh
Confidence 3443211 2234566677766542 356677777777777652 35666665443
No 89
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=59.18 E-value=11 Score=30.93 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.2
Q ss_pred ecCCCchHHHHHHHHHhCCceeeeeee
Q 023305 193 LDEGPGVLFKALAVFALREINLTKIES 219 (284)
Q Consensus 193 ~~~~pGaL~~~L~~F~~~~INLt~IeS 219 (284)
++++||.+.++++.|+++|||+-.|-.
T Consensus 23 ~~~~~G~~a~if~~La~~~InId~i~~ 49 (178)
T 2dtj_A 23 ISDKPGEAAKVFRALADAEINIDMVLQ 49 (178)
T ss_dssp EECSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEEEc
Confidence 589999999999999999999987753
No 90
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=58.02 E-value=80 Score=26.19 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=61.2
Q ss_pred hCCCCceee-cCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCCcCCc--
Q 023305 17 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQL-- 93 (284)
Q Consensus 17 ~f~~~~~~~-~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~l~~i-- 93 (284)
.+|+.++.. ..+-.++.+.+.+|++|+|++.......+... ..|.+.++.+ +.+-.|-|...+..+++|+
T Consensus 116 ~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~----v~~~~~pl~~~~~~~~~dL~~ 188 (294)
T 1ixc_A 116 STPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRHPGIEI---VNIAQEDLYL----AVHRSQSGKFGKTCKLADLRA 188 (294)
T ss_dssp HCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCCTTEEE---EEEEEEEEEE----EEEGGGGGGTCSEECGGGGTT
T ss_pred HCCCcEEEEEeCCHHHHHHHHHCCCccEEEEecCCCCCCceE---EEEeeccEEE----EEeCCCccccCCccCHHHHcC
Confidence 357655432 34567889999999999999864321111100 0111111111 1222333322222233333
Q ss_pred -cEEEec----HHHHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEEcchhHH
Q 023305 94 -KRVLSH----PQALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAA 147 (284)
Q Consensus 94 -~~V~SH----pqal~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa 147 (284)
.-|... +..-....+|+.+.++. ...++|...+.++|+.+. ..|+.+...+
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~---Gia~lp~~~~ 247 (294)
T 1ixc_A 189 VELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMAGA---ASSIVPASVA 247 (294)
T ss_dssp CEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTTS---CBEEEEHHHH
T ss_pred CCEEeeCCCCCchHHHHHHHHHHHCCCCcceeeecCCHHHHHHHHHcCC---eEEEechhhh
Confidence 344433 12234566777766543 345667777777777652 3566676553
No 91
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=57.83 E-value=96 Score=27.05 Aligned_cols=112 Identities=13% Similarity=0.060 Sum_probs=65.1
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCc---c
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQL---K 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i---~ 94 (284)
+++++..+..++++++.+|++|+++......+.. .-...++.+++-.. +-...++++++. +++|+ +
T Consensus 84 Ve~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~-------~~~g~~~~~v~~~~-~~~~~ivv~~~s~I~s~~DL~kGk 155 (341)
T 3un6_A 84 LELVKFNNWPDLMDALNSGRIDGASTLIELAMKS-------KQKGSNIKAVALGH-HEGNVIMGQKGMHLNEFNNNGDDY 155 (341)
T ss_dssp EEEEECSSHHHHHHHHHTTSSSEEEEEHHHHHHH-------HHTTCCCEEEEESC-EECEEEEESTTCCGGGCCSSSSCE
T ss_pred EEEEEcCCHHHHHHHHHcCCCCEEecchHHHHHH-------HHCCCCeEEEeecC-CCceEEEEcCCCCCCCHHHhCCCC
Confidence 5788999999999999999999998765421111 11123556655432 334567777653 45666 4
Q ss_pred EEEecHHH---HHHHHHHHHhcCC-----eEEecCCHHHHHHHHHhcCCCCeEEEcc
Q 023305 95 RVLSHPQA---LASSDIVLTQLGV-----ARENVDDTASAAQYVASNGLRDAGAVAS 143 (284)
Q Consensus 95 ~V~SHpqa---l~Qc~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~~~~~~aAI~s 143 (284)
+|..-... ....+.+|++.++ +.+.. +..++...+..+ .-+ |++..
T Consensus 156 ~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G-~vD-a~~~~ 209 (341)
T 3un6_A 156 HFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEH-RIT-GYSVA 209 (341)
T ss_dssp EEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTT-SCS-EEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcC-CCC-EEEec
Confidence 66544321 1223457777654 33444 456666666655 244 44443
No 92
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=57.64 E-value=16 Score=30.79 Aligned_cols=90 Identities=13% Similarity=0.039 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHH--HHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEE-EEEEEeeeeE
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDT--FKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIV-GEVQLAANFC 81 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v--~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~-~E~~l~I~~~ 81 (284)
+.|+..+....+ ++. +++.+++..++ +++|.+|++| +++.-. .....+.. .....++.+. +....+...+
T Consensus 138 ~~g~~~~~~l~~-~~~-~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 210 (271)
T 2iee_A 138 AATTVYMEVARK-YGA-KEVIYDNATNEQYLKDVANGRTD-VILNDY-YLQTLALA---AFPDLNITIHPDIKYMPNKQA 210 (271)
T ss_dssp CTTSHHHHHHHH-TTC-EEEECSSCCHHHHHHHHHHTSSC-EEEEEH-HHHHHHHH---HCTTSSCEECSSCCEEEEEEC
T ss_pred eCCccHHHHHHH-cCC-ceEEeCChhhHHHHHHHHcCCcc-EEeccH-HHHHHHHH---hCCCCceEEecCCCcccceEE
Confidence 567777666554 343 78899999999 9999999999 776522 11111110 1111245554 3333344455
Q ss_pred eeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 82 LLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 82 L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
++.+++ +|+-..+..+.|.+
T Consensus 211 ~~~~k~-----------~~~l~~~ln~al~~ 230 (271)
T 2iee_A 211 LVMKKS-----------NAALQKKMNEALKE 230 (271)
T ss_dssp CEEETT-----------CHHHHHHHHHHHHH
T ss_pred EEEcCC-----------CHHHHHHHHHHHHH
Confidence 555543 46666666666655
No 93
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=56.61 E-value=96 Score=27.14 Aligned_cols=115 Identities=15% Similarity=0.005 Sum_probs=65.5
Q ss_pred Cce--eecCC-HHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc
Q 023305 21 CET--VPCDE-FEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK 94 (284)
Q Consensus 21 ~~~--~~~~s-~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~ 94 (284)
+++ ....+ ..++++++.+|++|+++......+ ...-...++.+++.....-...|+++++. +++|++
T Consensus 46 v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~-------~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s~~DLk 118 (348)
T 3uif_A 46 VEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPI-------ILNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIKDLK 118 (348)
T ss_dssp EEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHH-------HHHHHSCCEEEEEECCCCCCCEEEEETTCCCCSGGGGT
T ss_pred EEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHH-------HHHhCCCCEEEEEeccCCCceEEEEECCCCCCCHHHcC
Confidence 566 45654 678899999999999985432111 11112346777665555555667777653 445553
Q ss_pred --EEEecHH--HHHHHHHHHHhcCC-----eEEecCCHHHHHHHHHhcCCCCeEEEcchh
Q 023305 95 --RVLSHPQ--ALASSDIVLTQLGV-----ARENVDDTASAAQYVASNGLRDAGAVASAR 145 (284)
Q Consensus 95 --~V~SHpq--al~Qc~~fl~~~~~-----~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~ 145 (284)
+|...+- .......+|++.++ +.+.. +.+++...+..+. -+ |++....
T Consensus 119 Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~-vD-a~~~~~~ 175 (348)
T 3uif_A 119 GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGT-VD-GFFSLFD 175 (348)
T ss_dssp TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTS-SS-EEEESTT
T ss_pred CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCC-CC-EEEechH
Confidence 6655322 22334667777664 33433 5667777777652 33 4454443
No 94
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=55.94 E-value=53 Score=27.52 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=55.6
Q ss_pred hCCCCcee-ecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccc-cCCeEEEEEEEEeeeeEeeecCCCCc---C
Q 023305 17 AYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RHRLHIVGEVQLAANFCLLALPGIKA---D 91 (284)
Q Consensus 17 ~f~~~~~~-~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~-~~~l~I~~E~~l~I~~~L~~~~~~~l---~ 91 (284)
.+|+.++. -..+-.++.+.+.+|++|+|++.-.....+.. ...|. ...+.+ .++-.|-|...+..++ .
T Consensus 120 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~---~~~l~~~~~~~~----v~~~~~pl~~~~~~~~~dL~ 192 (306)
T 3fzv_A 120 AYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYEHDLDSTIE---TEPLMPPQRPHA----LLPEGHRFAGQAQVSLRDLC 192 (306)
T ss_dssp HCTTEEEEEEEECHHHHHHHHHHTSCSEEEECSSSCCTTEE---EEESSCCBCCEE----EEETTCTTTTSSEECHHHHT
T ss_pred HCCCeEEEEEeCCHHHHHHHHHCCCccEEEEeccccccccc---eeeeeeccccEE----EecCCCcccCCCCCCHHHHc
Confidence 35665543 23566788999999999999986432222211 11122 222222 2233444432221222 2
Q ss_pred CccEEEec-HHHHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhc
Q 023305 92 QLKRVLSH-PQALASSDIVLTQLGVA---RENVDDTASAAQYVASN 133 (284)
Q Consensus 92 ~i~~V~SH-pqal~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~ 133 (284)
+..-|... +..-.....|+.+.++. ...++|...+.++|..+
T Consensus 193 ~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g 238 (306)
T 3fzv_A 193 LEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQG 238 (306)
T ss_dssp TSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTT
T ss_pred CCCEEEecCCcchHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcC
Confidence 33344432 22234455666665542 34566777777777765
No 95
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=55.59 E-value=21 Score=28.71 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=27.1
Q ss_pred eEEEEE-EecCCCchHHHHHHHHHhCCceeeeee
Q 023305 186 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIE 218 (284)
Q Consensus 186 ktsi~f-~~~~~pGaL~~~L~~F~~~~INLt~Ie 218 (284)
+.+++- ..++.||.+.++++.|+++|||+..|-
T Consensus 105 ~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 105 KVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 455553 346789999999999999999999885
No 96
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=55.47 E-value=24 Score=28.75 Aligned_cols=112 Identities=15% Similarity=0.137 Sum_probs=64.7
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCC-----CCcCCcc-
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-----IKADQLK- 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~-----~~l~~i~- 94 (284)
.++++. ++..+++++.+|++|.++-++-.+-+ . ...+... .-++.....++++++ .+++|++
T Consensus 46 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~--------r--~~~~~~s-~p~~~~~~~~~~~~~~~~~i~~~~dL~~ 113 (245)
T 3k4u_A 46 LKLVPT-SWDGLIPGLVTEKFDIIISGMTISQE--------R--NLRVNFV-EPYIVVGQSLLVKKGLEKGVKSYKDLDK 113 (245)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSSCBCCHH--------H--HTTSEEC-SCSEEECEEEEEETTTTTTCCSGGGGCC
T ss_pred EEEEEc-cHHHHHHHHhCCCcCEEEecCcCCHH--------H--HhhcCcc-hhhheeceEEEEECCcccccCCHHHhcc
Confidence 566775 69999999999999986533321111 0 0011111 112233345666555 2455554
Q ss_pred ---EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 95 ---RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 95 ---~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
+|....- ... ..+|.+. ++..+.+.|..++.+++..+ .-.|+|+....+.
T Consensus 114 ~g~~i~v~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~ 168 (245)
T 3k4u_A 114 PELTLVTKFG-VSA-EYAAKRLFKNAKLKTYDTEAEAVQEVLNG--KADMFIFDLPFNV 168 (245)
T ss_dssp SSCEEEEETT-SHH-HHHHHHHCSSSEEEEESSHHHHHHHHHSS--SSEEEEEEHHHHH
T ss_pred CCcEEEEeCC-cHH-HHHHHhhCCcCCEEEeCCHHHHHHHHHcC--CCcEEEEcHHHHH
Confidence 4443322 222 3455553 67788899999999999876 3457787765544
No 97
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=54.78 E-value=77 Score=25.03 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=66.8
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCC----cCCcc-
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIK----ADQLK- 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~----l~~i~- 94 (284)
+.++++. ++.++++++.+|++|+ +.++-- +.+ ....+.. ..-+.....+++++++.. ++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~-~~~~~~--------~~~--r~~~~~~-s~p~~~~~~~~~~~~~~~~~~~~~dL~g 117 (234)
T 3h7m_A 51 TVEFRLG-AWSEMFSALKSGRVDV-LQGISW--------SEK--RARQIDF-TPPHTIVYHAIFARRDSPPAAGLEDLRG 117 (234)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSE-EEEEEC--------CHH--HHTTEEE-EEEEEEEEEEEEEESSSCCCSSGGGGTT
T ss_pred ceEEEeC-CHHHHHHHHhCCCeeE-EEeccC--------CHh--HHhhcCC-CccccccceEEEEECCCCCCCCHHHhCC
Confidence 4567765 8999999999999998 444321 111 1112222 233445667777776532 33432
Q ss_pred -EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 95 -RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 95 -~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
+|....-.. -..+|.+. +++.+.+.|..++.+++..+. -.|+++....+.
T Consensus 118 ~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~ 170 (234)
T 3h7m_A 118 RKVALHRDGI--MHEYLAERGYGKDLVLTPTPADALRLLAAGG--CDYAVVAMVPGM 170 (234)
T ss_dssp SCEEEETTSH--HHHHHHTTTCGGGEEEESSHHHHHHHHHTTS--SSEEEEEHHHHH
T ss_pred CEEEEEeCch--HHHHHHhcCCCceEEEeCCHHHHHHHHHcCC--ceEEEeccHHHH
Confidence 343322211 23566664 357888899999999998863 347777766554
No 98
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=53.27 E-value=1.1e+02 Score=26.45 Aligned_cols=131 Identities=14% Similarity=0.113 Sum_probs=74.0
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc---
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--- 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~--- 94 (284)
++..+.. -..+++++.+|++|+.+--.-+.+.. +.++.. ..++...+...-+-.+.|++++.. +++|++
T Consensus 46 Ve~~~~~-~~~~~~AL~~G~iD~~~e~w~~~~~~---~~~~~~-~~~l~~l~~~~~~~~~~l~V~~~~~i~sisDL~~~~ 120 (280)
T 3tmg_A 46 AEIFSVT-TSIMYQYLASGKIDGTVSSWVPTADK---FYYEKL-KTKFVDLGANYEGTIQGFVVPSYVPISSISELKGKG 120 (280)
T ss_dssp EEEEECC-HHHHHHHHHTTSSSEEEEEEETTTTH---HHHHHH-GGGEEEEEEEEEEEEEEEEEETTSCCCBGGGGTTCG
T ss_pred eEEEECC-cHHHHHHHHCCCCcEEEeccCCcccH---HHHHHh-cCcEEEccccCCCceEEEEECCCCCCCCHHHHHhhH
Confidence 5667764 47889999999999976533333221 122222 236888887776666888888754 344554
Q ss_pred -----EEEecHHHHH---HHHHHHHhcCC-e-EEecCCHHH-----HHHHHHhcCCCCeEEE-cchhHHHhcCCceeec
Q 023305 95 -----RVLSHPQALA---SSDIVLTQLGV-A-RENVDDTAS-----AAQYVASNGLRDAGAV-ASARAAEIYGLNILAD 157 (284)
Q Consensus 95 -----~V~SHpqal~---Qc~~fl~~~~~-~-~~~~~sTa~-----Aa~~v~~~~~~~~aAI-~s~~aa~~ygL~il~~ 157 (284)
+++.-|..+. .....++..+. . ...+.++.. ..+.+.++ ....+.+ .+.-.-..|+|.+|+.
T Consensus 121 ~~f~~~~~g~~~G~~~~~~~~~~l~~yGL~~~~~~v~~s~~~m~~~l~~A~~~g-~~~v~~~w~p~~~~~~~~l~~LeD 198 (280)
T 3tmg_A 121 DKFKNKMIGIDAGAGTQIVTEQALNYYGLSKEYELVPSSESVMLASLDSSIKRN-EWILVPLWKPHWAFSRYDIKFLDD 198 (280)
T ss_dssp GGGTTEEECCSTTCHHHHHHHHHHHHTTCTTTSEEECCCHHHHHHHHHHHHHTT-CCCCEEEEESCTHHHHSCEEECBC
T ss_pred HHcCCeEEecCCCchhHHHHHHHHHhcCCCCceEEEeCCHHHHHHHHHHHHHCC-CCEEEEEecCchhhhcCCeEEecC
Confidence 3455444432 22345555565 2 333333222 12333433 3444433 6666667899999975
No 99
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=52.75 E-value=26 Score=28.51 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.1
Q ss_pred eEEEEE-EecCCCchHHHHHHHHHhCCceeeeee
Q 023305 186 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIE 218 (284)
Q Consensus 186 ktsi~f-~~~~~pGaL~~~L~~F~~~~INLt~Ie 218 (284)
+.|++- ..++.||.+.++++.+++.|||+..|-
T Consensus 97 ~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 97 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 566664 357899999999999999999999885
No 100
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=52.75 E-value=79 Score=24.52 Aligned_cols=118 Identities=15% Similarity=0.059 Sum_probs=61.0
Q ss_pred hCCCCcee-ecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecC-CCCcCCc-
Q 023305 17 AYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALP-GIKADQL- 93 (284)
Q Consensus 17 ~f~~~~~~-~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~-~~~l~~i- 93 (284)
.+|+.++. -..+-.++.+++.+|++|+|++.-.....+.. ...|.+.++.+ ..+-.|-|...+ ..+++|+
T Consensus 30 ~~P~i~i~l~~~~~~~l~~~l~~g~~Dl~i~~~~~~~~~l~---~~~l~~~~~~~----v~~~~hpl~~~~~~~~~~~l~ 102 (209)
T 2ql3_A 30 EYPRASVEFREDTQNRLRTQLEGGELDVAIVYDLDLSPEWQ---TVPLMTREPMV----VLGAEHPLAGVDGPVRLADLA 102 (209)
T ss_dssp HCTTEEEEEEECCHHHHHHHHHTTSCSEEEEESSSCCTTEE---EEEEEEECCEE----EEETTCGGGGCCSCBCGGGGT
T ss_pred HCCCceEEEEECcHHHHHHHHHcCCccEEEEecCCCCCCce---EEEeecCceEE----EEeCCCccccCCCCcCHHHHh
Confidence 46776553 34567889999999999999986321111110 01122222222 223334343322 2344444
Q ss_pred --cEEEecHHHH-HHHHHHHHhcCC--e-EEecCCHHHHHHHHHhcCCCCeEEEcch
Q 023305 94 --KRVLSHPQAL-ASSDIVLTQLGV--A-RENVDDTASAAQYVASNGLRDAGAVASA 144 (284)
Q Consensus 94 --~~V~SHpqal-~Qc~~fl~~~~~--~-~~~~~sTa~Aa~~v~~~~~~~~aAI~s~ 144 (284)
.-|...+... .+...++.+.++ . ...++|...+.++|+.+. ..|+.+.
T Consensus 103 ~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~---Gi~~lp~ 156 (209)
T 2ql3_A 103 EHPMVLLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFVGRGL---GWTLLLQ 156 (209)
T ss_dssp TSCEEEECCTTHHHHHHHHHHHHTCCCCEEEEESCHHHHHHHHHHTS---CBEEESC
T ss_pred CCCEEeeCChhHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcCC---eEEEeeC
Confidence 3443322222 345566666554 2 356777777778887752 2455544
No 101
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=52.48 E-value=9.6 Score=31.05 Aligned_cols=114 Identities=11% Similarity=0.022 Sum_probs=65.1
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCC-----CCcCCcc-
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-----IKADQLK- 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~-----~~l~~i~- 94 (284)
.++++. ++.++++++.+|++|.++.++.-+-+. ...+.... -++.....++++++ .+++|++
T Consensus 56 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r----------~~~~~fs~-p~~~~~~~~~~~~~~~~~i~~~~dL~~ 123 (239)
T 3kbr_A 56 LVVVPT-SWPNLMRDFADDRFDIAMSGISINLER----------QRQAYFSI-PYLRDGKTPITLCSEEARFQTLEQIDQ 123 (239)
T ss_dssp EEEEEC-CTTTHHHHHHTTCCSEECSSCBCCHHH----------HTTCEECS-CSEEECEEEEEEGGGGGGGSSHHHHSS
T ss_pred eEEEEe-CHHHHHHHHHCCCcCEEEeCCcCCHHH----------cCccccch-HHhccCcEEEEECCcccccCCHHHhcC
Confidence 567777 899999999999999886543321110 00111100 11223344555433 1344444
Q ss_pred ---EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhc
Q 023305 95 ---RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEIY 150 (284)
Q Consensus 95 ---~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~y 150 (284)
+|....-.. -..++.+. +...+...|..++.+++..+. -.|+|.....+..+
T Consensus 124 ~g~~v~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~~~~~~~~~~~ 180 (239)
T 3kbr_A 124 PGVTAIVNPGGT--NEKFARANLKKARILVHPDNVTIFQQIVDGK--ADLMMTDAIEARLQ 180 (239)
T ss_dssp TTCEEEECTTSH--HHHHHHHHCSSSEEEECCCTTTHHHHHHTTS--CSEEEEEHHHHHHH
T ss_pred CCcEEEEcCCCc--HHHHHHHhCCCCceEEeCCHHHHHHHHHcCC--cCEEEEchHHHHHH
Confidence 554433221 13455553 577888889999999998763 34777777666543
No 102
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=52.36 E-value=28 Score=27.92 Aligned_cols=34 Identities=32% Similarity=0.244 Sum_probs=28.5
Q ss_pred ceEEEEE-EecCCCchHHHHHHHHHhCCceeeeee
Q 023305 185 FKTSIVF-TLDEGPGVLFKALAVFALREINLTKIE 218 (284)
Q Consensus 185 ~ktsi~f-~~~~~pGaL~~~L~~F~~~~INLt~Ie 218 (284)
.|.|++- ..++.||.+.++++.+++.|||+..|-
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 3677776 357899999999999999999997774
No 103
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=51.47 E-value=66 Score=25.78 Aligned_cols=121 Identities=12% Similarity=-0.031 Sum_probs=59.2
Q ss_pred hCCCCcee-ecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCCcCCc--
Q 023305 17 AYPKCETV-PCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQL-- 93 (284)
Q Consensus 17 ~f~~~~~~-~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~l~~i-- 93 (284)
.+|+.++. -..+-.++.+++.+|++|+|++.......|.. ...|.+.++.++ .+-.|-|.. +..+++|+
T Consensus 44 ~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~---~~~l~~~~~~~v----~~~~hpl~~-~~i~~~dL~~ 115 (241)
T 3oxn_A 44 EAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGPVEPLR---SEILGRVGVLCL----LSKQHPLAN-QEMSLDDYLS 115 (241)
T ss_dssp HCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSCCTTEE---EEEEECCCEEEE----EETTSGGGG-SCCCHHHHHT
T ss_pred HCCCCEEEEEECCcccHHHHHHcCCCCEEEecCCCCCccce---eEEeecccEEEE----EeCCCCccc-CCCCHHHHhc
Confidence 35776553 33556788999999999999996321111110 011222222222 222333322 22233333
Q ss_pred -cEEEecH--HHHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 94 -KRVLSHP--QALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 94 -~~V~SHp--qal~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
.-|.-.+ ....+...++.+. .. ...++|...+.++|+.+ ...||.+...+..
T Consensus 116 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~g---~giailp~~~~~~ 173 (241)
T 3oxn_A 116 HPHAMIAISDGVKALIEQALIDK-PQRKMVLRAYHLEAALAIVDTL---PIIITVPADLAYL 173 (241)
T ss_dssp SEEEECSCCHHHHHHHHHHSTTS-CCCEEEEECSSTHHHHHHC--C---CCEEEEEHHHHHH
T ss_pred CCeEEEecCCCccchhHHHHHhh-ccceEEEECCcHHHHHHHHhCC---CeEEEcHHHHHHH
Confidence 2332222 1233344455444 33 24677777777777765 2466777766653
No 104
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=48.68 E-value=50 Score=29.44 Aligned_cols=153 Identities=12% Similarity=0.012 Sum_probs=82.2
Q ss_pred ccCCCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHhCCCCeEEEeeeec-----------------
Q 023305 2 MQGLPGSFSEDAALKAY--------PKCETVPCDE-----FEDTFKAVELWLADKAVLPIENS----------------- 51 (284)
Q Consensus 2 ylGp~GtfS~~Aa~~~f--------~~~~~~~~~s-----~~~v~~av~~~~~d~gvvPiENS----------------- 51 (284)
+..|+|+..+.++.++. ++.++..+++ -.+++++|..|.+|++++..-..
T Consensus 15 ~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~~av~~G~id~~~~~~~~~~~~~P~~~~~~lPfl~~ 94 (327)
T 2hpg_A 15 HVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYVKDIGVMNLAYFID 94 (327)
T ss_dssp CCCSTTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTSGGGGGGGSTTHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCccCCCHHHHHHHHhCCCccEEEechHhhhhhCccHHhccCCeEEC
Confidence 34577877777766532 2244444443 37899999999999998864210
Q ss_pred -----------------ccceeec-ccccccc-CCeEEEEE-EEEeeeeEeeecCC-CCcCCcc--EEEecHHHHHHHHH
Q 023305 52 -----------------SSGSIHR-NYDLLLR-HRLHIVGE-VQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDI 108 (284)
Q Consensus 52 -----------------~~G~V~~-t~d~L~~-~~l~I~~E-~~l~I~~~L~~~~~-~~l~~i~--~V~SHpqal~Qc~~ 108 (284)
..|.+.+ ..+.+.+ .++++.+- ......+ +..++. .+++|++ +|..-+-. -...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~g~~~L~~~~~~g~~~-~~~~~pI~s~~DLkG~KiRv~~~~--~~~~ 171 (327)
T 2hpg_A 95 FMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYRH-FVTNKPIRKPEDLNGLRIRTPGAP--AWQE 171 (327)
T ss_dssp HTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEEE-EEESSCCSSGGGGTTCEEECCSSH--HHHH
T ss_pred CCCCCcHHHHHHHHHHHHcCHHHHHHHHHHHhhCCeEEEEEeccCccee-EecCCCCCCHHHHCCCEEEeCCCH--HHHH
Confidence 1121111 1111233 67888776 4444433 333333 3667776 67764322 2356
Q ss_pred HHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeecccc
Q 023305 109 VLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQ 160 (284)
Q Consensus 109 fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~ 160 (284)
+++..|+..++.. .++....+..+ .- .|+..+.....-.++.=+.+.+.
T Consensus 172 ~~~alGa~pv~m~-~~Evy~ALq~G-~V-Dg~~~p~~~~~~~~~~ev~ky~~ 220 (327)
T 2hpg_A 172 SIRSLGAIPVAVN-FGEIYTAVQTR-AV-DGAELTYANVYNGGLYEVLKYMS 220 (327)
T ss_dssp HHHHHTSEEECCC-GGGHHHHHHTT-SC-SEEEECHHHHHHTTGGGTCCEEE
T ss_pred HHHHcCCEeeecC-HHHHHHHHHcC-Ce-eEEECCHHHHHHcChhhhccEEE
Confidence 8888898776543 33344444443 22 35666655544445433333333
No 105
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=48.21 E-value=65 Score=25.46 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=63.9
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEee-eeEeeecCCC--CcCCcc--E
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAA-NFCLLALPGI--KADQLK--R 95 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I-~~~L~~~~~~--~l~~i~--~ 95 (284)
.++++. ++.++++++.+|++|+++-++. .+.+. ...+.... -+... ...++++++. +++|++ +
T Consensus 47 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~~~~r--~~~~~~s~-p~~~~~~~~~~~~~~~~~~~~dL~g~~ 114 (229)
T 2y7i_A 47 CSFTNQ-SFDSLIPSLRFKKFDAVIAGMD--------MTPKR--EQQVSFSQ-PYYEGLSAVVVTRKGAYHTFADLKGKK 114 (229)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSSCB--------CCHHH--HTTSEECS-CSBCCCCEEEEEETTSCCSTGGGTTCE
T ss_pred EEEEEc-CHHHHHHHHhCCCceEEEecCc--------cCHHH--hcceeecc-ccccCCcEEEEEeCCCCCCHHHHCCCE
Confidence 567775 7899999999999998863321 11110 00111110 11222 4455555542 334442 4
Q ss_pred EEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 96 VLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 96 V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
|.... .... ..+|.+. ++..+.+.|..++.+++..+. -.|+++....+..
T Consensus 115 v~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~~~~~~~~~~ 166 (229)
T 2y7i_A 115 VGLEN-GTTH-QRYLQDKQQAITPVAYDSYLNAFTDLKNNR--LEGVFGDVAAIGK 166 (229)
T ss_dssp EEEET-TSHH-HHHHHHHCTTSEEEEESCHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred EEEec-CCcH-HHHHHHhCCCCeEEecCCHHHHHHHHHcCC--cCEEEechHHHHH
Confidence 54322 2222 3466653 577888889999999998763 3477777665544
No 106
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=47.48 E-value=72 Score=25.71 Aligned_cols=115 Identities=10% Similarity=0.040 Sum_probs=60.7
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc--E
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--R 95 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~--~ 95 (284)
.++++. ++.++++++.+|++|+++.++.-+.+- ...++. ...+ ......++++++. +++|++ +
T Consensus 83 v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~~--~~~~~~--~~p~-------~~~~~~~~~~~~~~i~~~~dL~g~~ 150 (259)
T 2v25_A 83 IKLVAV-NAKTRGPLLDNGSVDAVIATFTITPER--KRIYNF--SEPY-------YQDAIGLLVLKEKKYKSLADMKGAN 150 (259)
T ss_dssp EEEEEC-CTTTHHHHHHTTSCSEECSSCBCCHHH--HTTEEE--CSCS-------EEEEEEEEEEGGGCCCSGGGCTTCE
T ss_pred eEEEEc-CHHHHHHHHhCCCCCEEEecCccCHHH--HhcCcc--cccc-------eeCceEEEEeCCCCCCCHHHhCCCE
Confidence 566777 458999999999999987543211100 000111 0111 1222344444332 334442 3
Q ss_pred EEecH--HHHHHHHHHHHhcCC--eEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 96 VLSHP--QALASSDIVLTQLGV--ARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 96 V~SHp--qal~Qc~~fl~~~~~--~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
|...+ ......+.++.+.++ ..+.+.+..++.+.+..+. -.|++.+...+..
T Consensus 151 i~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~--vDa~~~~~~~~~~ 206 (259)
T 2v25_A 151 IGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKR--VDAFSVDKSILLG 206 (259)
T ss_dssp EEEETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHTT
T ss_pred EEEecCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCC--CcEEEecHHHHHH
Confidence 43321 112233445555554 5677888999999988763 3467776655443
No 107
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=46.86 E-value=31 Score=28.29 Aligned_cols=113 Identities=7% Similarity=-0.054 Sum_probs=62.7
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC-----CcCCcc-
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI-----KADQLK- 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~-----~l~~i~- 94 (284)
.++++. ++.+++.++.+|++|+++-++.-+ -+. ...+... .-+......++++++. +++|++
T Consensus 54 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t--------~~r--~~~~~~s-~p~~~~~~~~~~~~~~~~~i~~~~dL~~ 121 (257)
T 2q88_A 54 VVASIS-EYGAMIPGLQAGRHDAITAGLFMK--------PER--CAAVAYS-QPILCDAEAFALKKGNPLGLKSYKDIAD 121 (257)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSCCBCC--------HHH--HTTSEEC-SCCCEECEEEEEETTCTTCCCBHHHHHH
T ss_pred eeEEeC-CHHHHHHHHHCCCcCEEEecccCC--------HHH--Hhccccc-cchhcCceEEEEECCCccCCCCHHHHhc
Confidence 556666 489999999999999886443211 110 0001100 0112233456665543 233443
Q ss_pred ----EEEecHHHHHHHHHHHHhcC---CeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 95 ----RVLSHPQALASSDIVLTQLG---VARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 95 ----~V~SHpqal~Qc~~fl~~~~---~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
+|....-. .. ..+|.+.+ .+.+.+.+..++.+++..+. -.|++.....+..
T Consensus 122 ~~g~~i~~~~g~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr--vDa~i~~~~~~~~ 179 (257)
T 2q88_A 122 NPDAKIGAPGGG-TE-EKLALEAGVPRDRVIVVPDGQSGLKMLQDGR--IDVYSLPVLSIND 179 (257)
T ss_dssp CTTCCEEECTTS-HH-HHHHHHTTCCGGGEEECSSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred cCCceEEEECCc-cc-HHHHHhcCCCCceEEEcCCHHHHHHHHHcCC--CcEEEcCHHHHHH
Confidence 44432222 22 34666653 36788889999999999863 3467777665543
No 108
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=46.73 E-value=99 Score=28.67 Aligned_cols=128 Identities=16% Similarity=0.109 Sum_probs=67.2
Q ss_pred EecCCHHHHHHHHHhcCCCCeEEEcchhH---HHhcCCceeeccccCCCCCeeEEEEEeeC---CCC-CC--CCCCceEE
Q 023305 118 ENVDDTASAAQYVASNGLRDAGAVASARA---AEIYGLNILADRIQDEPDNITRFLVLARD---PII-PR--TDKLFKTS 188 (284)
Q Consensus 118 ~~~~sTa~Aa~~v~~~~~~~~aAI~s~~a---a~~ygL~il~~~I~d~~~N~TRF~vl~~~---~~~-~~--~~~~~kts 188 (284)
+..-+..++.++...+. -+-...| |..+|.++.-.+-.+. +-=|.|.--... ... .. ....+-+.
T Consensus 193 i~~is~~e~~el~~~Ga-----~v~~~~a~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~~~~~ 266 (421)
T 3ab4_A 193 LEKLSFEEMLELAAVGS-----KILVLRSVEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDKSEAK 266 (421)
T ss_dssp CSEECHHHHHHHHHTTC-----CSSCHHHHHHHHHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEECSEEE
T ss_pred ccccCHHHHHHHHhcCC-----cCchHHHHHHHHHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeCCEEE
Confidence 33334566666655431 1122222 3457887766665543 455666310000 110 01 01123344
Q ss_pred EEEE-ecCCCchHHHHHHHHHhCCceeeeeeeeeCCC-CCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHHH
Q 023305 189 IVFT-LDEGPGVLFKALAVFALREINLTKIESRPQRK-RPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQ 266 (284)
Q Consensus 189 i~f~-~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~-~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L~ 266 (284)
|.+. .+++||.+.++++.|+++|||+-.|-. ++.. .. | .....|.|+-+ +..+..++|++++
T Consensus 267 i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q-~~s~~~~---------g---~~~isf~v~~~---~~~~a~~~l~~~~ 330 (421)
T 3ab4_A 267 VTVLGISDKPGEAAKVFRALADAEINIDMVLQ-NVFSVED---------G---TTDITFTCPRS---DGRRAMEILKKLQ 330 (421)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE-CCCC--C---------C---EEEEEEEEETT---THHHHHHHHHHHH
T ss_pred EEEeccCCcccHHHHHHHHHHHcCCcEEEEEc-cCccccC---------C---cceEEEEEech---hHHHHHHHHHHHH
Confidence 4444 689999999999999999999998843 2211 00 0 02456777642 2244567777765
Q ss_pred h
Q 023305 267 E 267 (284)
Q Consensus 267 ~ 267 (284)
.
T Consensus 331 ~ 331 (421)
T 3ab4_A 331 V 331 (421)
T ss_dssp T
T ss_pred H
Confidence 3
No 109
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=45.93 E-value=1.6e+02 Score=26.19 Aligned_cols=125 Identities=13% Similarity=0.001 Sum_probs=71.8
Q ss_pred cCCCCcHHHHHHHhhC--------CCCceeecC-----CHHHHHHHHHhCCCCeEEEeeeecccce---------eeccc
Q 023305 3 QGLPGSFSEDAALKAY--------PKCETVPCD-----EFEDTFKAVELWLADKAVLPIENSSSGS---------IHRNY 60 (284)
Q Consensus 3 lGp~GtfS~~Aa~~~f--------~~~~~~~~~-----s~~~v~~av~~~~~d~gvvPiENS~~G~---------V~~t~ 60 (284)
..|+|+..+.++..+. ++.++..++ +..+++++|..|.+|++++..-.. .+. ....+
T Consensus 41 ~~~~~~~~~~~~~~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~-~~~~p~~~~~~~lP~~~ 119 (361)
T 2zzv_A 41 AWDAGTVGYSLFQKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYW-AGRMPVTAFLSSYALGL 119 (361)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGG-TTTCGGGGGSSCCTTSC
T ss_pred cCCCCCchhHHHHHHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEeccccc-cccCcHHHHHhcCCCCc
Confidence 4577766666665542 224444444 458999999999999998864321 111 11100
Q ss_pred -------------------c-ccccCCeEEEEEEEEeeeeEeeecCC-CCcCCcc--EEEecHHHHHHHHHHHHhcCCeE
Q 023305 61 -------------------D-LLLRHRLHIVGEVQLAANFCLLALPG-IKADQLK--RVLSHPQALASSDIVLTQLGVAR 117 (284)
Q Consensus 61 -------------------d-~L~~~~l~I~~E~~l~I~~~L~~~~~-~~l~~i~--~V~SHpqal~Qc~~fl~~~~~~~ 117 (284)
+ .+.+.++++.+ ......+.+...+. .+++|++ +|..-. . -...+++..|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~g~~~~~~~~~pI~s~~DLkG~kirv~~-~--~~~~~~~~lGa~p 195 (361)
T 2zzv_A 120 DRPDQWETWFYSLGGLDIARRAFAEQGLFYVG-PVQHDLNIIHSKKPIRRFEDFKGVKLRVPG-G--MIAEVFAAAGAST 195 (361)
T ss_dssp CSHHHHHHHHHTSSHHHHHHHHHHHTTEEEEE-EECCCCCCEEESSCCCSGGGGTTCEEECCS-H--HHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHcCchHHHHHHHHHHCCcEEec-ccCCccccceeCCCcCChHHhCCCEEeecC-H--HHHHHHHHcCCee
Confidence 0 11235788888 55544444444333 3667776 666543 2 2356788888877
Q ss_pred EecCCHHHHHHHHHhc
Q 023305 118 ENVDDTASAAQYVASN 133 (284)
Q Consensus 118 ~~~~sTa~Aa~~v~~~ 133 (284)
++. +.++....+..+
T Consensus 196 v~~-~~~e~~~ALq~G 210 (361)
T 2zzv_A 196 VLL-PGGEVYPALERG 210 (361)
T ss_dssp ECC-CGGGHHHHHHTT
T ss_pred eec-ChHHHHHHHHcC
Confidence 665 445555555554
No 110
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=45.75 E-value=62 Score=27.39 Aligned_cols=113 Identities=11% Similarity=0.074 Sum_probs=65.1
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc--E
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--R 95 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~--~ 95 (284)
.++++.+ +.++++++.+|++|+++.++.- +.+. ...+.. ..-+......++++++. +++|++ +
T Consensus 99 v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~--------~~~r--~~~~~~-~~p~~~~~~~l~~~~~~~i~sl~dL~gk~ 166 (291)
T 2yjp_A 99 VEFVLTE-AANRVEYVRSGKVDLILANFTQ--------TPER--AEAVDF-ADPYMKVALGVVSPKNKPITDMAQLKDQT 166 (291)
T ss_dssp EEEEECC-GGGHHHHHHTTSCSEECSSCBC--------CHHH--HTTEEE-CCCCEEECEEEEEETTSCCCSGGGGTTSE
T ss_pred EEEEEcc-HHHHHHHHhCCCeeEEEeCCCC--------ChHH--Hcccee-ccCeeecceEEEEeCCCCCCCHHHhCCCE
Confidence 5667776 6899999999999988643321 1110 111111 11123344567776653 344443 5
Q ss_pred EEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 96 VLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 96 V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
|..- ..-.. ..+|.+. +...+...+..++.+++..+. -.|++.....+..
T Consensus 167 v~~~-~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~~ 218 (291)
T 2yjp_A 167 LLVN-KGTTA-DAFFTKSHPEVKLLKFDQNTETFDALKDGR--GVALAHDNALLWA 218 (291)
T ss_dssp EEEE-TTSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred EEEe-cCCcH-HHHHHHhCCCceEEEeCCHHHHHHHHHcCC--ccEEEecHHHHHH
Confidence 5542 22222 2355553 567788889999999998763 3467776655443
No 111
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=45.34 E-value=12 Score=31.28 Aligned_cols=113 Identities=8% Similarity=-0.051 Sum_probs=60.7
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc--E
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--R 95 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~--~ 95 (284)
.++++.+ +.++++++.+|++|+++-++. .+.+. ...+... .-+.....+++++++. +++|++ +
T Consensus 62 ~~~~~~~-~~~~~~~l~~g~~D~~~~~~~--------~t~~r--~~~~~fs-~p~~~~~~~~~~~~~~~i~~~~dL~g~~ 129 (268)
T 3hv1_A 62 VEWQAID-WDMKETELKNGTIDLIWNGYS--------VTDER--KQSADFT-EPYMVNEQVLVTKKSSGIDSVAGMAGKT 129 (268)
T ss_dssp EEEEECC-GGGHHHHHHHTSCSEECSSCB--------CCHHH--HTTCEEC-CCCEEECEEEEEEGGGCCCSSGGGTTCC
T ss_pred EEEEECC-HHHHHHHHHCCCCCEEEecCc--------cCHHH--HhcCcCc-HHHeeCceEEEEECCCCCCCHHHhCCCE
Confidence 5677774 999999999999998762221 11111 0111111 1122333455555432 334442 3
Q ss_pred EEecHHHHHHHHHHHHhc---------CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 96 VLSHPQALASSDIVLTQL---------GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 96 V~SHpqal~Qc~~fl~~~---------~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
|..-. .... ..+|.+. +.+.+.+.|..++.+++..+. -.|+|+....+..
T Consensus 130 i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr--vDa~i~~~~~~~~ 188 (268)
T 3hv1_A 130 LGAQA-GSSG-YDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR--IDGLLIDRVYANY 188 (268)
T ss_dssp EEEET-TCHH-HHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS--CSEEEEEHHHHHH
T ss_pred EEEEe-CCch-HHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC--CCEEEeCHHHHHH
Confidence 33211 1111 2233321 256788889999999999863 3477777665543
No 112
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=45.07 E-value=27 Score=31.07 Aligned_cols=46 Identities=22% Similarity=0.031 Sum_probs=36.5
Q ss_pred cCCCCcHHHHHHHhhCC--C-----CceeecCCHHHHHHHHHhCCCCeEEEee
Q 023305 3 QGLPGSFSEDAALKAYP--K-----CETVPCDEFEDTFKAVELWLADKAVLPI 48 (284)
Q Consensus 3 lGp~GtfS~~Aa~~~f~--~-----~~~~~~~s~~~v~~av~~~~~d~gvvPi 48 (284)
.|+.||-+|.++..++. + ...+++.+..+++.++.+|++|..+...
T Consensus 151 ~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~~ 203 (327)
T 4ddd_A 151 IGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDVI 203 (327)
T ss_dssp CCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEEE
T ss_pred cCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEcc
Confidence 36789999988776542 1 2457999999999999999999998743
No 113
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=43.69 E-value=1.3e+02 Score=24.54 Aligned_cols=115 Identities=12% Similarity=0.024 Sum_probs=62.1
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCC-----CCcCCcc
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-----IKADQLK 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~-----~~l~~i~ 94 (284)
+.++++. ++.++++++.+|++|.++-++-.+-+.. ..++ ...++ ......++.+++ .+++|++
T Consensus 69 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~~r~--~~~~--fs~p~-------~~~~~~~~~~~~~~~~i~~~~dL~ 136 (259)
T 4dz1_A 69 KLNITEY-AWDGMLGAVASGQADVAFSGISITDKRK--KVID--FSEPY-------YINSFYLVSMANHKITLNNLNELN 136 (259)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSSSEEEEEEECCHHHH--TTEE--ECCCS-------EEEEEEEEEETTSCCCCCSGGGGG
T ss_pred eEEEEEc-CHHHHHHHHhCCCCCEEEECCcCCHHHh--hccc--cccch-------hhCceEEEEEcCCCCCCCCHHHhC
Confidence 3577888 8999999999999999775543221110 0001 01111 222334444332 1344442
Q ss_pred --EEEecHHH--HHHHHHHHHhcC----CeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 95 --RVLSHPQA--LASSDIVLTQLG----VARENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 95 --~V~SHpqa--l~Qc~~fl~~~~----~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
+|....-. ...-++++...+ .+.+...|..++.+++..+. -.|++.....+.
T Consensus 137 g~~v~v~~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~--vDa~~~~~~~~~ 196 (259)
T 4dz1_A 137 KYSIGYPRGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGN--LDLAFIEEPVYF 196 (259)
T ss_dssp GSCEEEETTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTS--CSEEEEEHHHHH
T ss_pred CCEEEEeCCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCC--CCEEEecHHHHH
Confidence 44432221 111222222223 56778889999999998863 347777766543
No 114
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=43.68 E-value=1.4e+02 Score=24.89 Aligned_cols=117 Identities=16% Similarity=0.063 Sum_probs=58.8
Q ss_pred CCCCceeecC-CHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCC-------CC
Q 023305 18 YPKCETVPCD-EFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPG-------IK 89 (284)
Q Consensus 18 f~~~~~~~~~-s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~-------~~ 89 (284)
+|+.++.... +-.++.+.+.+|++|+|++... .+... ..+ +..+.......++++.++ .+
T Consensus 127 ~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~---~~~~~-------~~~--l~~~~l~~~~~~~v~~~~~pl~~~~i~ 194 (310)
T 2esn_A 127 APGVRLRLVNAERKLSVEALASGRIDFALGYDE---EHERL-------PEG--IQAHDWFADRYVVVARRDHPRLAGAPT 194 (310)
T ss_dssp STTCEEEEECCSSSCCHHHHHHTSSSEEEECCS---TTCCC-------CTT--EEEEEEEEECEEEEEESSCTTCSSSCC
T ss_pred CCCeEEEEEeCCcccHHHHHHcCCCCEEEecCc---ccccC-------CcC--cceeeeeccceEEEEeCCCCCcCCCCC
Confidence 5776553332 3356788899999999998621 01100 001 111112222333333332 22
Q ss_pred cCCc---cEEEecHHH--HHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 90 ADQL---KRVLSHPQA--LASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 90 l~~i---~~V~SHpqa--l~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
++|+ .-|.-.+.. -.+...|+.+.++. ...++|...+.++|+.+ ...|+.+...++.
T Consensus 195 ~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gia~lp~~~~~~ 259 (310)
T 2esn_A 195 LEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGST---DFLLTAPRHAARA 259 (310)
T ss_dssp HHHHHTSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTS---SCEEEEEHHHHHH
T ss_pred HHHHhcCCcEEEeCCCCcccHHHHHHHhCCCCeeEEEeCCCHHHHHHHHhcC---CeEEEcHHHHHHH
Confidence 3333 234333211 23456677776542 34667777777777765 2366777766543
No 115
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=43.34 E-value=1.4e+02 Score=26.20 Aligned_cols=134 Identities=8% Similarity=-0.059 Sum_probs=75.6
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccc-cCCeEEEEEEEEeeeeEeeecC------C-CCcCC
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-RHRLHIVGEVQLAANFCLLALP------G-IKADQ 92 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~-~~~l~I~~E~~l~I~~~L~~~~------~-~~l~~ 92 (284)
++.++..+-..+++++.+|++|+..--.-+. -.+.++... +.++...+....+-.+.|++++ + .+++|
T Consensus 38 Ve~~~~~~~~~~~~Al~~G~iDi~~e~w~~~----~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~~a~~~~i~si~D 113 (309)
T 1r9l_A 38 VNKPSEVDYNVGYTSLASGDATFTAVNWTPL----HDNMYEAAGGDKKFYREGVFVNGAAQGYLIDKKTADQYKITNIAQ 113 (309)
T ss_dssp ECCCEECCHHHHHHHHHHTSSCEEEEEEETT----THHHHHHTTGGGTEEECSCSEEEEEEEEEEEHHHHHHHTCCBGGG
T ss_pred eEEeecCchHHHHHHHhcCCceEEeccccCc----cHHHHHHhhcCCcEEEecccCCCceEEEEEchhhhhhcCCCCHHH
Confidence 4555555778899999999999985322221 122333222 2356666665445566777754 3 35778
Q ss_pred cc----------------EEEecHHHHH---HHHHHHHhcCCe--EEecCC-HH----HHHHHHHhcCCCCeEEE-cchh
Q 023305 93 LK----------------RVLSHPQALA---SSDIVLTQLGVA--RENVDD-TA----SAAQYVASNGLRDAGAV-ASAR 145 (284)
Q Consensus 93 i~----------------~V~SHpqal~---Qc~~fl~~~~~~--~~~~~s-Ta----~Aa~~v~~~~~~~~aAI-~s~~ 145 (284)
++ +++.-|.... .....|+.++.. .....+ .+ ...+.+.++ ....+.+ .+.-
T Consensus 114 L~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~~~~~~~~s~~~~~~~~~~A~~~g-~~~v~~~w~P~~ 192 (309)
T 1r9l_A 114 LKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEG-KPVFYYTWTPYW 192 (309)
T ss_dssp GGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTTTEEEECSCHHHHHHHHHHHHHTT-CCCEEEEEESSS
T ss_pred HcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCCceEEcCCCHHHHHHHHHHHHHCC-CCEEEEeecCch
Confidence 86 6666654332 224466666654 333333 22 233333443 4555555 4555
Q ss_pred HHHhc----CCceeeccc
Q 023305 146 AAEIY----GLNILADRI 159 (284)
Q Consensus 146 aa~~y----gL~il~~~I 159 (284)
....| +|.+|+..-
T Consensus 193 ~~~~~~~g~dl~~Le~~~ 210 (309)
T 1r9l_A 193 VSNELKPGKDVVWLQVPF 210 (309)
T ss_dssp HHHHSCBTTTEEECBCSS
T ss_pred HhhhccccCCceEeccCc
Confidence 56677 999987764
No 116
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=43.01 E-value=32 Score=28.33 Aligned_cols=87 Identities=16% Similarity=0.063 Sum_probs=52.9
Q ss_pred CCcHHHHHHHhhC---C-CCc-eeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccc---cCCeEEEEEEEEe
Q 023305 6 PGSFSEDAALKAY---P-KCE-TVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL---RHRLHIVGEVQLA 77 (284)
Q Consensus 6 ~GtfS~~Aa~~~f---~-~~~-~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~---~~~l~I~~E~~l~ 77 (284)
.||..+....++. + ... .....+..+++.+|.+|++|..+. +.. +.+.+. ..++.++++..-+
T Consensus 125 ~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~---~~~------~~~~~~~~~~~~~~~~~~~~~~ 195 (243)
T 4gvo_A 125 ATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATIS---TPF------AVDFQNKTSAIKEKVVGDVLSN 195 (243)
T ss_dssp TTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEE---CHH------HHHHHHHTCSSCEEEEEEEEEC
T ss_pred cCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEc---cHH------HHHHHHhhCCCceEEeccCCCC
Confidence 5666666555432 2 222 346789999999999999997653 221 112121 2357788887777
Q ss_pred eeeEeeecCCCCcCCccEEEecHHHHHHHHHHHHh
Q 023305 78 ANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQ 112 (284)
Q Consensus 78 I~~~L~~~~~~~l~~i~~V~SHpqal~Qc~~fl~~ 112 (284)
...+++.+++ +|+-..+-.++|.+
T Consensus 196 ~~~~~~~~k~-----------~~~l~~~in~~l~~ 219 (243)
T 4gvo_A 196 AKVYFMLGKD-----------ETKLSKKVDEALQS 219 (243)
T ss_dssp CEECCEECTT-----------CHHHHHHHHHHHHH
T ss_pred CcEEEEEeCC-----------CHHHHHHHHHHHHH
Confidence 7777766654 45555555555554
No 117
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=42.98 E-value=1.5e+02 Score=25.04 Aligned_cols=120 Identities=18% Similarity=0.138 Sum_probs=59.8
Q ss_pred CCCCceee-cCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCCcCCcc--
Q 023305 18 YPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLK-- 94 (284)
Q Consensus 18 f~~~~~~~-~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~l~~i~-- 94 (284)
+|+.++.. ..+-.++.+.+.+|++|+|++.......+... ..|.+.++.++ .+-.|-|.. ...+++|+.
T Consensus 131 ~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~l~~---~~l~~~~~~~v----~~~~hpl~~-~~i~~~dL~~~ 202 (315)
T 1uth_A 131 APHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQ---RRLFRHRYVCM----FRKDHPSAK-SPMSLKQFSEL 202 (315)
T ss_dssp CTTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTCCTTEEE---EEEEEECEEEE----EETTCSSCC-SSCCHHHHHHS
T ss_pred CCCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCCCCCceE---EEeeccceEEE----EeCCCCCcC-CCCCHHHHhcC
Confidence 57766533 33446788999999999999864321111100 11112222221 222333322 222334432
Q ss_pred -EE-EecHH-HHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 95 -RV-LSHPQ-ALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 95 -~V-~SHpq-al~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
.| +..+. .......|+.+.++. ...++|......+|+.+ ...|+.+...++
T Consensus 203 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~giailp~~~~~ 259 (315)
T 1uth_A 203 EHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIATVPQRFAV 259 (315)
T ss_dssp EEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBEEEEHHHHH
T ss_pred CeEEEecCCCCCCchhHHHHhcCCCceEEEECCcHHHHHHHHhcC---CEEEEcHHHHHH
Confidence 23 22211 123456677776543 34566776677777765 236677766654
No 118
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=41.43 E-value=1.8e+02 Score=25.44 Aligned_cols=166 Identities=8% Similarity=-0.071 Sum_probs=90.9
Q ss_pred cCCCCcHHHHHHHhhC--------CCCceeecCC-----HHHHHHHHHhCCCCeEEEeeeeccc----------------
Q 023305 3 QGLPGSFSEDAALKAY--------PKCETVPCDE-----FEDTFKAVELWLADKAVLPIENSSS---------------- 53 (284)
Q Consensus 3 lGp~GtfS~~Aa~~~f--------~~~~~~~~~s-----~~~v~~av~~~~~d~gvvPiENS~~---------------- 53 (284)
.-|+|+-.+.++..+. ++.++..+++ -.+++++|..|.+|++++..-+ ..
T Consensus 10 ~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~-~~~~~P~~~~~~lPfl~~ 88 (312)
T 2xwv_A 10 NAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESAR-FQLFYPEAAVFALPYVIS 88 (312)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGG-GGGTSGGGGGGGSTTTSC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHCCCceEEEeCchh-hhhhccchhhhcCCcccC
Confidence 4477888788876542 2244544444 4899999999999999886321 11
Q ss_pred -----------ceee-cccccc-ccCCeEEEEEEEEeeeeEeeecCCCCcCCcc--EEEecHHHHHHHHHHHHhcCCeEE
Q 023305 54 -----------GSIH-RNYDLL-LRHRLHIVGEVQLAANFCLLALPGIKADQLK--RVLSHPQALASSDIVLTQLGVARE 118 (284)
Q Consensus 54 -----------G~V~-~t~d~L-~~~~l~I~~E~~l~I~~~L~~~~~~~l~~i~--~V~SHpqal~Qc~~fl~~~~~~~~ 118 (284)
|.+. +.++-+ .+.++++.+-......+....+|=.+++|++ +|..-+.. -...+++..|+..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~~~~~~~pI~s~~DlkGlKiRv~~~~--~~~~~~~alGa~pv 166 (312)
T 2xwv_A 89 NYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQTTSNRAINSIADMKGLKLRVPNAA--TNLAYAKYVGASPT 166 (312)
T ss_dssp SHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEEEEESSCCCSGGGGTTCEEEECSCH--HHHHHHHHHTCEEE
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHhCCeEEEEeeccCceeeecCCCcCCHHHhCCCEEEeCCCH--HHHHHHHHcCCeee
Confidence 1110 011111 2247888887777766543223324667776 66665432 23567888898776
Q ss_pred ecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccCCCCCeeEE-EEEee
Q 023305 119 NVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRF-LVLAR 174 (284)
Q Consensus 119 ~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF-~vl~~ 174 (284)
+..- ++....+..+ .- .|+..+.....-.++.=+.+.+....+..+-+ +++++
T Consensus 167 ~m~~-~Evy~ALq~G-~v-Dg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 220 (312)
T 2xwv_A 167 PMAF-SEVYLALQTN-AV-DGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSN 220 (312)
T ss_dssp ECCG-GGHHHHHHTT-SS-SEEEEEHHHHHHTTGGGSCSEEECCCCCEEEEEEEEEH
T ss_pred ecCH-HHHHHHHHcC-Cc-ceEeccHHHHhhcchhhccceEEecCccccceEEEEeH
Confidence 5432 3333333443 22 35555555544445544455554444444444 44444
No 119
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=40.70 E-value=93 Score=26.16 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=65.3
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc--
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK-- 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~-- 94 (284)
+.++++.+ +.++++++.+|++|+++..+.-- +.+. ...+... .-+......++++++. +++|++
T Consensus 97 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~-------t~~r--~~~~~~~-~p~~~~~~~l~~~~~~~i~s~~dL~G~ 165 (283)
T 2yln_A 97 KVEFKETQ-WDSMMAGLKAGRFDVVANQVGLT-------SPER--QATFDKS-EPYSWSGAVLVAHNDSNIKSIADIKGV 165 (283)
T ss_dssp EEEEEECC-GGGHHHHHHHTSCSEECSSCCCC-------SHHH--HHHEEEC-SCSEEECEEEEEETTCSCCSGGGCTTS
T ss_pred ceEEEECC-HHHHHHHHHCCCcCEEEecCccC-------Chhh--hcceEec-cCeeeecEEEEEECCCCCCCHHHhCCC
Confidence 35778887 99999999999999986443210 1100 0001110 0112233456666543 344543
Q ss_pred EEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 95 RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 95 ~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
+|..-.-. . -..+|.+.+++.+...+..++.+.+..+. -.|++.....+.
T Consensus 166 ~v~v~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~l~~g~--vDa~i~~~~~~~ 215 (283)
T 2yln_A 166 KTAQSLTS-N-YGEKAKAAGAQLVPVDGLAQSLTLIEQKR--ADATLNDELAVL 215 (283)
T ss_dssp EEEECTTS-H-HHHHHHHTTCEEEECSSHHHHHHHHHTTS--CCEEEEEHHHHH
T ss_pred EEEEecCc-h-HHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEecHHHHH
Confidence 55542221 1 23466666888888889999999988763 346676655443
No 120
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=39.84 E-value=57 Score=28.01 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=73.3
Q ss_pred Cceee-cCCHHHHHHHHHhCCCCeEEEeeee---cccce--e-----eccccccc-----cCCeEEEEEEEEeeeeEeee
Q 023305 21 CETVP-CDEFEDTFKAVELWLADKAVLPIEN---SSSGS--I-----HRNYDLLL-----RHRLHIVGEVQLAANFCLLA 84 (284)
Q Consensus 21 ~~~~~-~~s~~~v~~av~~~~~d~gvvPiEN---S~~G~--V-----~~t~d~L~-----~~~l~I~~E~~l~I~~~L~~ 84 (284)
++..+ ..+-..+++++.+|++|+++-=.-+ +..+. . .+.++.+. +.++.+++-....-.+.|++
T Consensus 36 Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V 115 (275)
T 1sw5_A 36 AEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALAV 115 (275)
T ss_dssp EEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEEE
T ss_pred EEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCCCeeEEEE
Confidence 56666 6678899999999999998510000 01111 0 00222211 23788888876666678887
Q ss_pred cC------C-CCcCCcc------EEEecHHHHH---HHHHHHHhcCCe--EEecCCHHHHHHHHHhcCCCCeEEE-cchh
Q 023305 85 LP------G-IKADQLK------RVLSHPQALA---SSDIVLTQLGVA--RENVDDTASAAQYVASNGLRDAGAV-ASAR 145 (284)
Q Consensus 85 ~~------~-~~l~~i~------~V~SHpqal~---Qc~~fl~~~~~~--~~~~~sTa~Aa~~v~~~~~~~~aAI-~s~~ 145 (284)
++ + .+++|++ ++-+-+.-.. .-..+++.+++. .+...+.+.+.+.+.++ ..+.+.+ .+..
T Consensus 116 ~~~~a~~~~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~~~~~~~~Al~~g-~vd~~~~~~p~~ 194 (275)
T 1sw5_A 116 RADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQMEPTLMYEAIKNK-QVDVIPAYTTDS 194 (275)
T ss_dssp EHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEECCGGGHHHHHHTT-SCSEEEEETTCH
T ss_pred eHHHHHHcCCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCCCHHHHHHHHHcC-CCeEEEEeCCCc
Confidence 64 3 2344553 2222233111 112256665543 33333555556666655 4555555 3333
Q ss_pred HHHhcCCceeecc
Q 023305 146 AAEIYGLNILADR 158 (284)
Q Consensus 146 aa~~ygL~il~~~ 158 (284)
....|+|.+|..+
T Consensus 195 ~~~~~~l~~L~d~ 207 (275)
T 1sw5_A 195 RVDLFNLKILEDD 207 (275)
T ss_dssp HHHHTTEEECBCT
T ss_pred chhcCCeEEccCC
Confidence 4456899988754
No 121
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=39.38 E-value=84 Score=27.56 Aligned_cols=87 Identities=13% Similarity=0.026 Sum_probs=53.8
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeecccccc-ccCCeEEEEEEEEeeeeEeeecCCC----CcCCcc-
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLL-LRHRLHIVGEVQLAANFCLLALPGI----KADQLK- 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L-~~~~l~I~~E~~l~I~~~L~~~~~~----~l~~i~- 94 (284)
++++...+-.++.++|.+|++|+|+......+ ... ...++.+++-+.-.-...++.+++. +++|.+
T Consensus 40 Vei~~~~~~~~~~~al~sG~~D~g~~~~~~~~--------~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dLkG 111 (342)
T 4esw_A 40 IAILEPSNPSDVTELVGSGKVDMGLKAMVGTL--------AAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLKG 111 (342)
T ss_dssp EEEEEESSGGGHHHHHHHTSSSEEEEEHHHHH--------HHHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGGTT
T ss_pred EEEEeCCChHHHHHHHHcCCcCEEEecHHHHH--------HHHHCCCCeEEEEEeccCCcccccccccccccCCHHHhCC
Confidence 67889999999999999999999987544221 111 1246777776655444556654432 234443
Q ss_pred -EEEe-cHHHHHHHHHHHHhcCC
Q 023305 95 -RVLS-HPQALASSDIVLTQLGV 115 (284)
Q Consensus 95 -~V~S-Hpqal~Qc~~fl~~~~~ 115 (284)
+|.. ........+.+|++.++
T Consensus 112 K~ig~~~~~~~~~l~~~L~~~Gl 134 (342)
T 4esw_A 112 KRIGYVGEFGKIQVDELTKHYGM 134 (342)
T ss_dssp CEEEESSSHHHHHHHHHHGGGTC
T ss_pred CEEEecCCchHHHHHHHHHHcCC
Confidence 4532 22334456778877654
No 122
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=38.44 E-value=1.7e+02 Score=24.21 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=63.9
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc--E
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--R 95 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~--~ 95 (284)
.++++. ++.+++.++.+|++|+++-++- .+.+. ...+.. ..-+......++++++. +++|++ +
T Consensus 65 v~~~~~-~~~~~~~~l~~g~~D~~~~~~~--------~t~~r--~~~~~~-s~p~~~~~~~l~~~~~~~i~sl~dL~g~~ 132 (287)
T 2vha_A 65 VKLIPI-TSQNRIPLLQNGTFDFECGSTT--------NNVER--QKQAAF-SDTIFVVGTRLLTKKGGDIKDFADLKGKA 132 (287)
T ss_dssp EEEEEC-CTTTHHHHHHTTSCSEECSSCB--------CCHHH--HTTCEE-EEEEEEEEEEEEEETTSSCCSGGGGTTCE
T ss_pred EEEEEC-CHHHHHHHHHCCCeeEEecccc--------CCcch--hhcccc-cceeeecceEEEEECCCCCCCHHHcCCCE
Confidence 456777 4588999999999998753211 11111 112222 12344555667777653 334442 4
Q ss_pred EEecHHH--HHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 96 VLSHPQA--LASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 96 V~SHpqa--l~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
|..-.-. ......++... ++..+.+.|..++.+++..+. -.|++.+...+..
T Consensus 133 v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~--vDa~i~~~~~~~~ 188 (287)
T 2vha_A 133 VVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGR--AVAFMMDDALLAG 188 (287)
T ss_dssp EEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS--CSEEEEEHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCC--eeEEEeChHHHHH
Confidence 5432211 11222333322 567788899999999998763 3467776655543
No 123
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=38.08 E-value=66 Score=25.75 Aligned_cols=114 Identities=7% Similarity=-0.041 Sum_probs=60.8
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecC-CC---CcCCcc--
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALP-GI---KADQLK-- 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~-~~---~l~~i~-- 94 (284)
.++++. ++.++++++.+|++|.++-++--+ -+. ...+.. ..-+......+++++ +. +++|++
T Consensus 49 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~--------~~r--~~~~~~-s~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 116 (246)
T 4eq9_A 49 VKFEKT-EWSGVFAGLDADRYNMAVNNLSYT--------KER--AEKYLY-AAPIAQNPNVLVVKKDDSSIKSLDDIGGK 116 (246)
T ss_dssp EEEEEC-CHHHHHHHHHTTSCSEECSSCCCC--------HHH--HHHEEE-CCCCEECCEEEEEETTCCSCSSGGGCTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCcCEEecccccC--------hhh--hhceee-ccceecCceEEEEECCCCCCCCHHHhCCC
Confidence 467777 999999999999999876332211 110 000111 111223345566655 32 334442
Q ss_pred EEEecHHH--HHHHHHHHHhcC---CeEEec-CCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 95 RVLSHPQA--LASSDIVLTQLG---VARENV-DDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 95 ~V~SHpqa--l~Qc~~fl~~~~---~~~~~~-~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
+|....-. ......++...+ +..+.. .|..++.+++..+. -.|+|+....+.
T Consensus 117 ~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~--vDa~~~~~~~~~ 174 (246)
T 4eq9_A 117 STEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQ--FDYKIFDKIGVE 174 (246)
T ss_dssp EEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTS--SSEEEEEHHHHH
T ss_pred EEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCC--ceEEEecHHHHH
Confidence 44432221 222333333443 445534 48899999998763 347777766554
No 124
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=37.85 E-value=1.1e+02 Score=28.84 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=61.1
Q ss_pred HHHhcCCceeeccccCCCCCeeEEEEEeeCCC--C--CCCC---CCceEEEEEE---ecCCCchHHHHHHHHHhCCceee
Q 023305 146 AAEIYGLNILADRIQDEPDNITRFLVLARDPI--I--PRTD---KLFKTSIVFT---LDEGPGVLFKALAVFALREINLT 215 (284)
Q Consensus 146 aa~~ygL~il~~~I~d~~~N~TRF~vl~~~~~--~--~~~~---~~~ktsi~f~---~~~~pGaL~~~L~~F~~~~INLt 215 (284)
-|..+|.++.-.+..+...-=|.|. ..... . +-.. ..+-+.|.+. .++.||.+.++++.|+++|||+-
T Consensus 253 ~a~~~~ipi~i~~~~~p~~~GT~i~--~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd 330 (446)
T 3tvi_A 253 PVKDSGIPINIKNTNKPSDPGTLIL--SDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFE 330 (446)
T ss_dssp HHHHSSCCEEEEETTBTTSCCEEEE--CTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEE
T ss_pred HHHHcCCeEEEecCCCCCCCCEEEe--cCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEE
Confidence 3456899998888766544457763 11111 1 1011 1122333333 25789999999999999999999
Q ss_pred eeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHHHhcC
Q 023305 216 KIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQEFA 269 (284)
Q Consensus 216 ~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L~~~~ 269 (284)
.|.+-. ....|.|+-+.- . ...++++++|+...
T Consensus 331 ~i~~~~-------------------~~is~~V~~~d~-~-~~~~~~~~el~~~~ 363 (446)
T 3tvi_A 331 HMPSGV-------------------DSVSLVIEDCKL-D-GKCDKIIEEIKKQC 363 (446)
T ss_dssp EBCEET-------------------TEEEEEEEHHHH-T-TTHHHHHHHHHHHS
T ss_pred EEecCC-------------------CEEEEEEecchH-H-HHHHHHHHHHHHhc
Confidence 885421 246788875321 1 14567778877643
No 125
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=37.65 E-value=2.3e+02 Score=25.56 Aligned_cols=73 Identities=15% Similarity=0.082 Sum_probs=46.9
Q ss_pred EEEEEecC-CCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHH-
Q 023305 188 SIVFTLDE-GPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHL- 265 (284)
Q Consensus 188 si~f~~~~-~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L- 265 (284)
.+.+--++ .|+.+.++...++.+|+|+..+.+.-. .+ ...+.|+|.+.. .+...++..+.++
T Consensus 103 ~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~--~~-------------~~~~~~~v~~~~-~~~~~l~~~l~~l~ 166 (415)
T 3p96_A 103 TIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSD--YP-------------VIGLELRVSVPP-GADEALRTALNRVS 166 (415)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEES--SS-------------SEEEEEEEECCT-TCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccC--CC-------------ceEEEEEeeCCC-CCHHHHHHHHHHHh
Confidence 33343456 899999999999999999988887652 11 134557776543 2345666666664
Q ss_pred HhcCCceEEEc
Q 023305 266 QEFATFLRVLG 276 (284)
Q Consensus 266 ~~~~~~vkvLG 276 (284)
.+....+-++-
T Consensus 167 ~~~~vD~~v~~ 177 (415)
T 3p96_A 167 SEEHVDVAVED 177 (415)
T ss_dssp HHHTCEEEEEE
T ss_pred hhcCcCccccc
Confidence 34455555553
No 126
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=37.62 E-value=31 Score=29.82 Aligned_cols=42 Identities=12% Similarity=-0.026 Sum_probs=33.8
Q ss_pred CCcHHHHHHHhhCC-------CCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 6 PGSFSEDAALKAYP-------KCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 6 ~GtfS~~Aa~~~f~-------~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
.||-++.....++. +.++++..+..+++.++.+|++|.++++
T Consensus 146 ~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~ 194 (346)
T 3qsl_A 146 PGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNT 194 (346)
T ss_dssp TTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEE
T ss_pred CCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccEEEec
Confidence 68877776665432 3567899999999999999999999885
No 127
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=37.00 E-value=1.8e+02 Score=24.22 Aligned_cols=114 Identities=9% Similarity=0.053 Sum_probs=63.7
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc--
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK-- 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~-- 94 (284)
+.++++.+ +.++++++.+|++|+++-++.-+ .+ ....+... .-+......++++++. +++|++
T Consensus 87 ~~~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~--------~~--r~~~~~~s-~p~~~~~~~~~~~~~~~i~~~~dL~g~ 154 (292)
T 1xt8_A 87 KVQFVLVE-AANRVEFLKSNKVDIILANFTQT--------PQ--RAEQVDFC-SPYMKVALGVAVPKDSNITSVEDLKDK 154 (292)
T ss_dssp CEEEEECC-GGGHHHHHHTTSCSEECSSCBCC--------HH--HHTTEEEC-CCCEEEEEEEEEETTCCCCSSGGGTTS
T ss_pred eEEEEEcC-HHHHHHHHhCCCeeEEeecCCCC--------cc--hhcceeee-ccceecceEEEEECCCCCCCHHHhCCC
Confidence 35667765 68999999999999875332111 00 00111111 1122334556666542 344543
Q ss_pred EEEecHHHHHHHHHHHHhc--CCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 95 RVLSHPQALASSDIVLTQL--GVARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 95 ~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
+|..-. .... ..++.+. +...+.+.|..++.+++..+. -.|++.....+..
T Consensus 155 ~i~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~--vDa~~~~~~~~~~ 207 (292)
T 1xt8_A 155 TLLLNK-GTTA-DAYFTQNYPNIKTLKYDQNTETFAALMDKR--GDALSHDNTLLFA 207 (292)
T ss_dssp EEEEET-TSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTTS--SSEEEEEHHHHHH
T ss_pred EEEEeC-CCcH-HHHHHHhCCCceEEEcCCHHHHHHHHHcCC--ccEEEecHHHHHH
Confidence 555432 2222 3455553 567788889999999998763 3467776655443
No 128
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=36.31 E-value=36 Score=29.41 Aligned_cols=43 Identities=9% Similarity=-0.113 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHhhCC----CCceeecC-CHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKAYP----KCETVPCD-EFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~----~~~~~~~~-s~~~v~~av~~~~~d~gvvP 47 (284)
.+||-+|...+.++. ++++++.. ++.++..++.+|++|.+++|
T Consensus 103 ~~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~vDa~~~~ 150 (283)
T 3hn0_A 103 GNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLG 150 (283)
T ss_dssp STTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CCCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCCCCEEEec
Confidence 378888876655432 56788887 89999999999999999986
No 129
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=35.99 E-value=33 Score=30.68 Aligned_cols=43 Identities=5% Similarity=-0.218 Sum_probs=35.9
Q ss_pred CCcHHHHHHHhhCC----CCceeecCCHHHHHHHHHhCCCCeEEEee
Q 023305 6 PGSFSEDAALKAYP----KCETVPCDEFEDTFKAVELWLADKAVLPI 48 (284)
Q Consensus 6 ~GtfS~~Aa~~~f~----~~~~~~~~s~~~v~~av~~~~~d~gvvPi 48 (284)
.||-+|.++..+.. +.+.+|+....+++.+|..|++|.++...
T Consensus 151 ~Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~al~~G~vD~~~~~~ 197 (314)
T 2dvz_A 151 TCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNL 197 (314)
T ss_dssp TTSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEH
T ss_pred CCcHHHHHHHHHHHHhCCCeEEcccCCHHHHHHHHHcCCceEEEEcH
Confidence 38999999876542 34578999999999999999999998864
No 130
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=35.88 E-value=1.6e+02 Score=23.23 Aligned_cols=121 Identities=10% Similarity=0.070 Sum_probs=60.6
Q ss_pred hCCCCceee-cCCHHHHHHHHHhCCCCeEEEeeeec-ccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCCcCCc-
Q 023305 17 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENS-SSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQL- 93 (284)
Q Consensus 17 ~f~~~~~~~-~~s~~~v~~av~~~~~d~gvvPiENS-~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~l~~i- 93 (284)
.+|+.++.. ..+..++.+++.+|++|+|++.-... ..+.. ...|.+.++.+ ..+-.|-|...+..+++|+
T Consensus 39 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~~l~---~~~l~~~~~~~----v~~~~hpla~~~~i~~~dL~ 111 (228)
T 2fyi_A 39 LFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLV---AFPWFRWHHSL----LVPHDHPLTQISPLTLESIA 111 (228)
T ss_dssp HCTTEEEEEEECCHHHHHHHHHHTSCSEEEESSSSTTCTTEE---EEEEEEECEEE----EEETTCGGGTSSSCCHHHHT
T ss_pred HCCCcEEEEEeCCHHHHHHHHHcCCccEEEEecccCCCCCce---EEEeeecceEE----EecCCCCccccCccCHHHHc
Confidence 467765533 35678999999999999999742100 11110 01111112211 2333444433222333333
Q ss_pred --cEEEecH-H-HHHHHHHHHHhcCC--e-EEecCCHHHHHHHHHhcCCCCeEEEcchhHH
Q 023305 94 --KRVLSHP-Q-ALASSDIVLTQLGV--A-RENVDDTASAAQYVASNGLRDAGAVASARAA 147 (284)
Q Consensus 94 --~~V~SHp-q-al~Qc~~fl~~~~~--~-~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa 147 (284)
.-|...+ . ...+...++.+.+. . ...++|.....++|+.+. ..|+.+..++
T Consensus 112 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~G~---Gia~lp~~~~ 169 (228)
T 2fyi_A 112 KWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGL---GIGLVAEQSS 169 (228)
T ss_dssp TSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTS---CEEEEEGGGG
T ss_pred CCCeEEecCCccHHHHHHHHHHHcCCCcceEEEeCCHHHHHHHHHhCC---CEEEeehHhh
Confidence 3343222 1 13345566666543 2 356677777778888752 3556565443
No 131
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=35.84 E-value=1.5e+02 Score=22.79 Aligned_cols=115 Identities=16% Similarity=0.067 Sum_probs=61.7
Q ss_pred hCCCCceee-cCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecC--------C
Q 023305 17 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALP--------G 87 (284)
Q Consensus 17 ~f~~~~~~~-~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~--------~ 87 (284)
.+|+.++.. ..+..++.+++.+|++|+|++.-.....+ +..+......+++++.+ .
T Consensus 29 ~~P~i~i~i~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~~---------------~~~~~l~~~~~~~v~~~~~pl~~~~~ 93 (219)
T 3jv9_A 29 TAPKMPLMLEENYTHTLTESLKRGDVDAIIVAEPFQEPG---------------IVTEPLYDEPFFVIVPKGHSFEELDA 93 (219)
T ss_dssp HSTTCCEEEEEECHHHHHHHHHHTSSSEEEEESSCCCTT---------------EEEEEEEEEEEEEEEETTCGGGTSSS
T ss_pred HCCCcEEEEEeCCcHHHHHHHHcCCCCEEEEcCCCCCCC---------------eeEEEeeeceEEEEEeCCCCcccCCC
Confidence 467776543 34677899999999999999975321111 11112222233333332 2
Q ss_pred CCcCCc---cEEEecHH--HHHHHHHHHHh-----c--CC-eEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHh
Q 023305 88 IKADQL---KRVLSHPQ--ALASSDIVLTQ-----L--GV-ARENVDDTASAAQYVASNGLRDAGAVASARAAEI 149 (284)
Q Consensus 88 ~~l~~i---~~V~SHpq--al~Qc~~fl~~-----~--~~-~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ 149 (284)
.+++|+ .-|...+. -..+...++.+ . .. ....++|...+.++++.+ ...|+.+...++.
T Consensus 94 ~~~~~L~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~g---~gi~~~p~~~~~~ 165 (219)
T 3jv9_A 94 VSPRMLGEEQVLLLTEGNCMRDQVLSSCSELAAKQRIQGLTNTLQGSSINTIRHMVASG---LAISVLPATALTE 165 (219)
T ss_dssp CCSSTTSSSCEEEECTTCHHHHHHHHHCSTTHHHHHHHTTTSSCEESSHHHHHHHHHHT---SCEEEEEGGGCCT
T ss_pred CCHHHhcCCcEEEecCCccHHHHHHHHHHhhhhhhccCCCCceEEeCCHHHHHHHHHcC---CcEEehhHHHHHh
Confidence 334444 34443322 22344555533 2 12 235677888888888875 2466766665443
No 132
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=35.10 E-value=39 Score=32.73 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=28.9
Q ss_pred EEEEecCCCchHHHHHHHHHhCCceeeeeeeeeCC
Q 023305 189 IVFTLDEGPGVLFKALAVFALREINLTKIESRPQR 223 (284)
Q Consensus 189 i~f~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~ 223 (284)
+.|..|++||+|.+.|+.+.. +-|+|-..=|-..
T Consensus 436 ~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~g 469 (514)
T 1tdj_A 436 YSFEFPESPGALLRFLNTLGT-YWNISLFHYRSHG 469 (514)
T ss_dssp EEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCTT
T ss_pred EEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCCC
Confidence 778999999999999999985 6788878888653
No 133
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=34.48 E-value=44 Score=28.26 Aligned_cols=43 Identities=19% Similarity=-0.027 Sum_probs=33.9
Q ss_pred CCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHhCCCCeEEEee
Q 023305 5 LPGSFSEDAALKAYPKCETVPCDEFEDTFKAVELWLADKAVLPI 48 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~~~~~~~~s~~~v~~av~~~~~d~gvvPi 48 (284)
..||.++...+.+..+.+++.. ++.++..++.+|++|.+++.-
T Consensus 110 ~~~s~~~~ll~~~l~~~~~~~~-~~~~~~~al~~G~vDa~~~~~ 152 (280)
T 1zbm_A 110 GRYTTANLLLKLAVEDFEPVEM-PFDRIIQAVLDEEVDAGLLIH 152 (280)
T ss_dssp CTTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEECS
T ss_pred CCCcHHHHHHHHHhccCceEec-CHHHHHHHHHcCCCCEEEEec
Confidence 4678888877777777777655 668999999999999988753
No 134
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=34.48 E-value=1.3e+02 Score=21.75 Aligned_cols=111 Identities=8% Similarity=0.005 Sum_probs=63.2
Q ss_pred EEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccCCCCCeeEEEEEee
Q 023305 95 RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLAR 174 (284)
Q Consensus 95 ~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF~vl~~ 174 (284)
-|=.++......+..|.+.++....+.+..+|.+.+.+.. + ...|.........|++++..=-++.....+.+++++.
T Consensus 12 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~-dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 12 IVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF-S-GVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC-C-EEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred EEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC-C-CEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEEC
Confidence 3445778888888899888888778888888888877653 4 3444433222334444443322222345688998887
Q ss_pred CCCCCCCCC--CceEEEEEEecCCCchHHHHHHHH
Q 023305 175 DPIIPRTDK--LFKTSIVFTLDEGPGVLFKALAVF 207 (284)
Q Consensus 175 ~~~~~~~~~--~~ktsi~f~~~~~pGaL~~~L~~F 207 (284)
......... ..-..-++.-|-.+..|...|...
T Consensus 90 ~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~ 124 (142)
T 3cg4_A 90 KNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFF 124 (142)
T ss_dssp TTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHH
Confidence 643221111 111233333355566676666554
No 135
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=33.53 E-value=2.3e+02 Score=24.31 Aligned_cols=106 Identities=19% Similarity=0.114 Sum_probs=59.6
Q ss_pred CceeecCCHH-HHHHHHHhCCCCeEEEeeeecccceeeccccccccCC-eEEEEEEEE-eeeeEeeecCCC----CcCCc
Q 023305 21 CETVPCDEFE-DTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHR-LHIVGEVQL-AANFCLLALPGI----KADQL 93 (284)
Q Consensus 21 ~~~~~~~s~~-~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~-l~I~~E~~l-~I~~~L~~~~~~----~l~~i 93 (284)
++++++.+-. .+++++.+|++|+++......+. ......+ +.+++-+.- |....++++++. +++|+
T Consensus 46 V~~~~~~~g~~~~~~al~~G~~D~~~~~~~~~~~-------~~~~g~~~~~~v~~~~~~~~~~~i~v~~ds~~i~s~~DL 118 (321)
T 2x7q_A 46 IEFVKVPEGSGRLINLLNSNEVDIAIGLTEAFIA-------DIAKGNENIHVLDTYVKSPLLWAVSTGSNRDDVTDAKQL 118 (321)
T ss_dssp EEEEECTTCHHHHHHHHHTTSCSEEEEEHHHHHH-------HHHTTCTTEEEEEEEECSCCEEEEEEESSCTTCSSGGGC
T ss_pred EEEEECCCCHHHHHHHHHcCCccEEecCcHHHHH-------HHHCCCCcEEEEEEecCCCcceEEEECCCCCCCCChHHc
Confidence 5677776654 58999999999999875421110 0111234 777765542 222456665432 45566
Q ss_pred cEEEecH-HHHH-HHHHHH-HhcCC----eEEecCCHHHHHHHHHhc
Q 023305 94 KRVLSHP-QALA-SSDIVL-TQLGV----ARENVDDTASAAQYVASN 133 (284)
Q Consensus 94 ~~V~SHp-qal~-Qc~~fl-~~~~~----~~~~~~sTa~Aa~~v~~~ 133 (284)
|+|.... -.-. ....++ ++.++ +.+...+.+.+...+..+
T Consensus 119 K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G 165 (321)
T 2x7q_A 119 KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLK 165 (321)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTC
T ss_pred ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcC
Confidence 7776653 2111 123344 34454 456666777777777765
No 136
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=33.38 E-value=2.1e+02 Score=23.83 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=61.7
Q ss_pred hCCCCceeec-CCHHHHHHHHHhCCCCeEEEeeeec--ccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCCcCCc
Q 023305 17 AYPKCETVPC-DEFEDTFKAVELWLADKAVLPIENS--SSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQL 93 (284)
Q Consensus 17 ~f~~~~~~~~-~s~~~v~~av~~~~~d~gvvPiENS--~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~l~~i 93 (284)
.+|+.++... .+-+++.+.+.+|++|+|+...... ..+... ..|.+.++.++. +-.|-|... .+++|+
T Consensus 117 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~~~l~~---~~L~~~~~~~v~----~~~hpla~~--~~~~dL 187 (305)
T 3fxq_A 117 EFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEA---QPLYVSDVVIVG----QRQHPMANA--TRLAEL 187 (305)
T ss_dssp HCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGGSCTTEEE---EEEEECCEEEEE----ETTCTTTTC--CSGGGG
T ss_pred HCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCCCccCeeE---EEeecCcEEEEE----cCCCCCCCC--CCHHHH
Confidence 3677665433 3456788999999999999864311 111110 111222222221 222222111 123333
Q ss_pred ---cEEEec-HHH-HHHHHHHHHhcCC-e---EEecCCHHHHHHHHHhcCCCCeEEEcchhHHH
Q 023305 94 ---KRVLSH-PQA-LASSDIVLTQLGV-A---RENVDDTASAAQYVASNGLRDAGAVASARAAE 148 (284)
Q Consensus 94 ---~~V~SH-pqa-l~Qc~~fl~~~~~-~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~ 148 (284)
.-|... ... -.....|+.+.++ . ...++|...+..+|+.+ ...|+.+...++
T Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g---~gia~lp~~~~~ 248 (305)
T 3fxq_A 188 QECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHS---DLLTTMPRTLYE 248 (305)
T ss_dssp TTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTS---SCEEEEEHHHHH
T ss_pred hCCCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhC---CEEEEeeHHHHh
Confidence 344332 221 2456777877665 2 34566777777777765 236777777665
No 137
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=32.75 E-value=2.3e+02 Score=24.04 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=75.7
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc---
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK--- 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~--- 94 (284)
++..+. +-.-+++++.+|++|+.+--.-+++.. +.++. .+.++...+...-.-.+.|++++.. +++|++
T Consensus 32 Ve~~~~-~~~~~~~al~~G~iD~~~e~w~~~~~~---~~~~~-~~~~l~~l~~~~~~~~~~l~Vp~~~~i~si~DL~~~~ 106 (256)
T 3l6g_A 32 VKTTAL-DNAVAWQTVANGQADGMVSAWLPNTHK---TQWQK-YGKSVDLLGPNLKGAKVGFVVPSYMNVNSIEDLTNQA 106 (256)
T ss_dssp EEEEEC-CHHHHHHHHHTTSSSEEEEEEETTTTH---HHHHH-HGGGEEEEEEEEEEEEEEEEEETTSCCCBGGGCSSGG
T ss_pred eEEEEC-ChHHHHHHHHCCCCeEEEcccCCcccH---HHHHH-hCCceEEccccCCCceEEEEECCccCCCCHHHHHHhc
Confidence 566776 557789999999999865422222111 12232 1346777787766667888887754 345554
Q ss_pred --EEEecHHHHH---HHHHHHHhc-CCe-EEecCCHHHH-----HHHHHhcCCCCeEEE-cchhHHHhcCCceeec
Q 023305 95 --RVLSHPQALA---SSDIVLTQL-GVA-RENVDDTASA-----AQYVASNGLRDAGAV-ASARAAEIYGLNILAD 157 (284)
Q Consensus 95 --~V~SHpqal~---Qc~~fl~~~-~~~-~~~~~sTa~A-----a~~v~~~~~~~~aAI-~s~~aa~~ygL~il~~ 157 (284)
+++.-|.... .....++.+ +.. ...+.++..+ .+.++++ ....+.+ .+.-.-..|+|.+|+.
T Consensus 107 ~g~~~g~~~G~~~~~~~~~~l~~y~gL~~~~~v~~s~~~m~~~l~~A~~~g-~~~v~~~w~p~~~~~~~~l~~LeD 181 (256)
T 3l6g_A 107 NKTITGIEPGAGVMAASEKTLNSYDNLKDWKLVPSSSGAMTVALGEAIKQH-KDIVITGWSPHWMFNKYDLKYLAD 181 (256)
T ss_dssp GGEEECCCTTCHHHHHHHHHHTTCGGGTTCEEECCCHHHHHHHHHHHHHTT-CCCCEEEEESCTHHHHSCEEECBC
T ss_pred CCeEEecCCCchhhHHHHHHHHhcCCCCCeEEecCCHHHHHHHHHHHHHCC-CCEEEEeecCchhhhhcCeEEecC
Confidence 6666665543 223455556 543 3333332221 2333443 4544444 6666777899999974
No 138
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=32.70 E-value=84 Score=27.80 Aligned_cols=57 Identities=19% Similarity=0.053 Sum_probs=37.2
Q ss_pred eeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccc------cCCeEEEEEEEEeeeeEeeecCCC
Q 023305 23 TVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL------RHRLHIVGEVQLAANFCLLALPGI 88 (284)
Q Consensus 23 ~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~------~~~l~I~~E~~l~I~~~L~~~~~~ 88 (284)
.++..+..+++.+|.+|++|.+++... ++..+. ..+++++++...--.+.++++++.
T Consensus 160 ~v~~~~~~~a~~al~~G~vDa~~~~~~---------~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~ 222 (321)
T 3p7i_A 160 RTVNAGHETNALAVANKQVDVATNNTE---------NLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNL 222 (321)
T ss_dssp EEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTS
T ss_pred eeecCCHHHHHHHHHCCCceEEEechH---------HHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCC
Confidence 456788999999999999999998632 122221 235777775433234556666653
No 139
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=30.87 E-value=38 Score=28.99 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHhhCC-----CCceeecCCHHHHHHHHHhCCCCeEEEeee
Q 023305 5 LPGSFSEDAALKAYP-----KCETVPCDEFEDTFKAVELWLADKAVLPIE 49 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~-----~~~~~~~~s~~~v~~av~~~~~d~gvvPiE 49 (284)
|-|.|..++..++ + ..+++..++..+++..|.+|++|.|++...
T Consensus 144 p~G~~a~~~l~~~-g~~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~~s 192 (253)
T 3gzg_A 144 PAGSYAAAALRKL-GQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGS 192 (253)
T ss_dssp HHHHHHHHHHHHT-TCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHH
T ss_pred chHHHHHHHHHHc-CcHHHHhhceeecCCHHHHHHHHHcCCCCEEEEEhh
Confidence 5677776665543 2 134678899999999999999999999643
No 140
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=30.80 E-value=94 Score=25.77 Aligned_cols=103 Identities=16% Similarity=0.077 Sum_probs=58.6
Q ss_pred CCceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCC-----CcCCcc
Q 023305 20 KCETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI-----KADQLK 94 (284)
Q Consensus 20 ~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~-----~l~~i~ 94 (284)
+.++++. ++.++++++.+|++|+++-.+.- +-+. ...+... .-+......++++++. +++|++
T Consensus 64 ~v~~~~~-~~~~~~~~l~~G~~D~~~~~~~~--------t~~r--~~~~~fs-~p~~~~~~~l~~~~~~~~~i~~~~dL~ 131 (271)
T 2iee_A 64 KVEFKEM-GIDGMLTAVNSGQVDAAANDIDV--------TKDR--EEKFAFS-TPYKYSYGTAIVRKDDLSGIKTLKDLK 131 (271)
T ss_dssp EEEEEEC-CSTTHHHHHHHTSSSEECSSCBC--------CHHH--HTTEEEC-CCSEEEEEEEEECTTTGGGCSSGGGGT
T ss_pred eEEEEEC-CHHHHHHHHHCCCcCEEEeCCcC--------Chhh--ccceEEe-ecceeCCeEEEEECCCCCCCCCHHHhC
Confidence 3567777 89999999999999987643211 1110 0111111 1122334556666543 344543
Q ss_pred --EEEecHHHHHHHHHHHHhcCCeEEecCCHHHH--HHHHHhcCCCC
Q 023305 95 --RVLSHPQALASSDIVLTQLGVARENVDDTASA--AQYVASNGLRD 137 (284)
Q Consensus 95 --~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~A--a~~v~~~~~~~ 137 (284)
+|..-.-. .. ..+|++.+.+.+.+.+..++ .+++..+. -+
T Consensus 132 g~~i~v~~g~-~~-~~~l~~~~~~~~~~~~~~~~~l~~~L~~Gr-vD 175 (271)
T 2iee_A 132 GKKAAGAATT-VY-MEVARKYGAKEVIYDNATNEQYLKDVANGR-TD 175 (271)
T ss_dssp TCEEESCTTS-HH-HHHHHHTTCEEEECSSCCHHHHHHHHHHTS-SC
T ss_pred CCEEEEeCCc-cH-HHHHHHcCCceEEeCChhhHHHHHHHHcCC-cc
Confidence 55543222 11 24666666677788888888 89888863 44
No 141
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=30.68 E-value=1.5e+02 Score=25.76 Aligned_cols=58 Identities=17% Similarity=0.064 Sum_probs=39.4
Q ss_pred ceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccc-c-----CCeEEEEEEEEeeeeEeeecCCC
Q 023305 22 ETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLL-R-----HRLHIVGEVQLAANFCLLALPGI 88 (284)
Q Consensus 22 ~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~-~-----~~l~I~~E~~l~I~~~L~~~~~~ 88 (284)
+.+...+..+++.+|.+|++|.+++... ++..+. . .+++++++...--.+.++++++.
T Consensus 150 ~~v~~g~~~~~~~al~~G~vDa~~~~~~---------~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~ 213 (310)
T 3n5l_A 150 KRTLNSSHEVNALAVANKQVDVATFNTE---------GMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNL 213 (310)
T ss_dssp SEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTS
T ss_pred cccccCCHHHHHHHHHcCCccEEEecch---------hHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCC
Confidence 3456688999999999999999998743 222222 1 36788776544445677777764
No 142
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=30.62 E-value=2.4e+02 Score=23.65 Aligned_cols=115 Identities=14% Similarity=-0.023 Sum_probs=63.8
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEE-EeeeeEeeecCCC---CcCCcc--
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQ-LAANFCLLALPGI---KADQLK-- 94 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~-l~I~~~L~~~~~~---~l~~i~-- 94 (284)
++++..++-.++++++.+|++|+++....... ...-...++.+++... .+....++++++. +++|++
T Consensus 34 v~~~~~~~~~~~~~~l~~G~~D~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~i~s~~dL~Gk 106 (308)
T 2x26_A 34 ISWVEFPAGPQMLEALNVGSIDLGSTGDIPPI-------FAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGH 106 (308)
T ss_dssp EEEEECSSHHHHHHHHHHTSCSEEEECSHHHH-------HHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSGGGGTTS
T ss_pred eEEEECCCcHHHHHHHHCCCCCEEcccCcHHH-------HHHhcCCCeEEEEEecCCCCceEEEEeCCCCCCCHHHcCCC
Confidence 56788888889999999999999986432100 0000123455554332 2335567776653 345553
Q ss_pred EEEecHHH--HHHHHHHHHhcCCe---E-EecCCHHHHHHHHHhcCCCCeEEEcch
Q 023305 95 RVLSHPQA--LASSDIVLTQLGVA---R-ENVDDTASAAQYVASNGLRDAGAVASA 144 (284)
Q Consensus 95 ~V~SHpqa--l~Qc~~fl~~~~~~---~-~~~~sTa~Aa~~v~~~~~~~~aAI~s~ 144 (284)
+|...+-. ......+|++.++. . ....+..++...+..+. -+ |++...
T Consensus 107 ~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~-vD-a~~~~~ 160 (308)
T 2x26_A 107 KVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN-VD-AWAIWD 160 (308)
T ss_dssp EEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS-SS-EEEEET
T ss_pred EEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC-CC-EEEecc
Confidence 56553321 22345667666653 2 12345667777777653 33 444443
No 143
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=30.60 E-value=73 Score=23.62 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=27.2
Q ss_pred EEEEEeecCCCcHHHHHHHHHHHhcCCceEEEce
Q 023305 244 LFYIDFEASMADPRAQNALGHLQEFATFLRVLGC 277 (284)
Q Consensus 244 ~F~id~eg~~~d~~~~~al~~L~~~~~~vkvLGs 277 (284)
.++|++.| ++.++.++++-|++....+.++|-
T Consensus 66 ~L~v~l~G--~~~~~~~ai~~L~~~~v~vEvl~~ 97 (106)
T 3dhx_A 66 IMLTEMHG--TQQDTQAAIAWLQEHHVKVEVLGY 97 (106)
T ss_dssp EEEEEEES--CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEEeC--CHHHHHHHHHHHHHCCCEEEEeee
Confidence 37789998 457899999999999999999984
No 144
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=29.87 E-value=84 Score=30.86 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=40.8
Q ss_pred EecCCCchHHHHHHHHHhCCceeeeeeeeeCCCCCCccccCCCCCCCccceeEEEEEeecCCCcHHHHHHHHHHHh
Q 023305 192 TLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEASMADPRAQNALGHLQE 267 (284)
Q Consensus 192 ~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~~~d~~~~~al~~L~~ 267 (284)
..++.||.+.++++.|+++|||.-.|-.-++... .....|.|+-+- -.+..+++++++.
T Consensus 277 ~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~--------------~~~Isftv~~~~---~~~a~~~l~~~~~ 335 (600)
T 3l76_A 277 RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGN--------------SNDIAFTVVKDL---LNTAEAVTSAIAP 335 (600)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTT--------------EEEEEEEECGGG---HHHHHHHHHHHGG
T ss_pred CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCC--------------CceEEEEEeHHH---HHHHHHHHHHHHH
Confidence 4578999999999999999999998865443322 134667776431 1455666776654
No 145
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=29.69 E-value=57 Score=23.49 Aligned_cols=39 Identities=15% Similarity=-0.018 Sum_probs=31.3
Q ss_pred EEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhc
Q 023305 95 RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASN 133 (284)
Q Consensus 95 ~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~ 133 (284)
-|=.+|......+.+|.+.+.....+.|..+|.+.+.+.
T Consensus 11 ivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~ 49 (132)
T 3lte_A 11 VVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF 49 (132)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT
T ss_pred EEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc
Confidence 344578888888999988888888888888888888765
No 146
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=29.19 E-value=61 Score=28.05 Aligned_cols=42 Identities=12% Similarity=-0.007 Sum_probs=32.4
Q ss_pred CCCcHHHHHHHhhCC-------CCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKAYP-------KCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~-------~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
+.||.++....+++. +.++++. ++.+++.++.+|++|.++++
T Consensus 137 ~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 185 (324)
T 3ksx_A 137 QKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAGQVDAWAIW 185 (324)
T ss_dssp CTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTTCCSEEEEE
T ss_pred cCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcCCCCEEEEc
Confidence 578888877665542 2456666 79999999999999988775
No 147
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=29.11 E-value=34 Score=28.62 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=32.8
Q ss_pred CCCcHHHHHHHhhCC-----CCceeecCCHHHHHHHHHhCCCCeEEEeee
Q 023305 5 LPGSFSEDAALKAYP-----KCETVPCDEFEDTFKAVELWLADKAVLPIE 49 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~-----~~~~~~~~s~~~v~~av~~~~~d~gvvPiE 49 (284)
|.|.|..++..+. + ...++...+..++...|.+|++|.|++...
T Consensus 128 p~G~~a~~~l~~~-g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s 176 (237)
T 3r26_A 128 PAGIYAKEALQKL-GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGS 176 (237)
T ss_dssp HHHHHHHHHHHHT-TCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHH
T ss_pred ChHHHHHHHHHHc-CCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEec
Confidence 5677776665442 2 124677889999999999999999999643
No 148
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=28.60 E-value=2.1e+02 Score=24.06 Aligned_cols=111 Identities=10% Similarity=0.079 Sum_probs=59.7
Q ss_pred ceeecCCHHHHHHHHHhCCCCeEEEeeeecc---cceeeccccccccCCeEEEEEEEEeeeeEeeecCCC---CcCCcc-
Q 023305 22 ETVPCDEFEDTFKAVELWLADKAVLPIENSS---SGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGI---KADQLK- 94 (284)
Q Consensus 22 ~~~~~~s~~~v~~av~~~~~d~gvvPiENS~---~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i~- 94 (284)
++.+..+-.+.+++|.+|++|+++....... .|.....++-....++..++.+. .-...|+++++. +++|++
T Consensus 53 ~v~~~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~lvv~~~~~i~sl~dL~g 131 (314)
T 1us5_A 53 NARSTGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALY-PEVVHVVARKDAGIRTVADLKG 131 (314)
T ss_dssp EEECCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEE-EEEEEEEEETTSSCSSGGGGTT
T ss_pred EEEecCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhhcC-cceEEEEEECCCCCCcHHHhCC
Confidence 4455567889999999999999987532211 11100011100123565554433 234566666543 445543
Q ss_pred -EEEe-cHH--HHHHHHHHHHhcCCe-----EEecCCHHHHHHHHHhc
Q 023305 95 -RVLS-HPQ--ALASSDIVLTQLGVA-----RENVDDTASAAQYVASN 133 (284)
Q Consensus 95 -~V~S-Hpq--al~Qc~~fl~~~~~~-----~~~~~sTa~Aa~~v~~~ 133 (284)
+|.. .+- .......++++.++. .+...+.+++...+..+
T Consensus 132 ~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G 179 (314)
T 1us5_A 132 KRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDK 179 (314)
T ss_dssp SEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTT
T ss_pred CEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcC
Confidence 4443 321 123456677766653 23455778888887765
No 149
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=27.75 E-value=53 Score=28.09 Aligned_cols=45 Identities=16% Similarity=-0.007 Sum_probs=33.7
Q ss_pred cCCCCcHHHHHHHhhCC--CC--c-e--eecCCHHHHHHHHHhCCCCeEEEe
Q 023305 3 QGLPGSFSEDAALKAYP--KC--E-T--VPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 3 lGp~GtfS~~Aa~~~f~--~~--~-~--~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
.|+.||-+|..+..++. +. + + .++.+..+++.++.+|++|.++..
T Consensus 136 ~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 136 VGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp CCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTSCSEEEEE
T ss_pred cCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCCccEEEEc
Confidence 35779988887766542 22 1 2 367789999999999999999864
No 150
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=26.68 E-value=32 Score=29.34 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=27.5
Q ss_pred CcHHHHHHHhhCCCC--ceeec--CCHHHHHHHHHhCCCCeEEEe
Q 023305 7 GSFSEDAALKAYPKC--ETVPC--DEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 7 GtfS~~Aa~~~f~~~--~~~~~--~s~~~v~~av~~~~~d~gvvP 47 (284)
||+ +....+.+++. +++.+ ++.++++++|.+|++|..+..
T Consensus 170 ~s~-~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d 213 (284)
T 2a5s_A 170 GST-ERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYD 213 (284)
T ss_dssp SHH-HHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEE
T ss_pred Cch-HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEc
Confidence 444 33334444432 34455 899999999999999988775
No 151
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=26.58 E-value=51 Score=23.67 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=49.4
Q ss_pred EEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccCC-CCCeeEEEEEee
Q 023305 96 VLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDE-PDNITRFLVLAR 174 (284)
Q Consensus 96 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~~ 174 (284)
|=.++......+.+|++.+.....+.|..+|.+.+.+.. ++ ..|........-|++++.. |... ....+.+++++.
T Consensus 9 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~-~d-lii~D~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 9 VEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG-YD-AVFIDLNLPDTSGLALVKQ-LRALPMEKTSKFVAVSG 85 (127)
T ss_dssp ECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC-CS-EEEEESBCSSSBHHHHHHH-HHHSCCSSCCEEEEEEC
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC-CC-EEEEeCCCCCCCHHHHHHH-HHhhhccCCCCEEEEEC
Confidence 335788888889999888888778888888888887653 44 3443332223445554433 2222 255678888876
Q ss_pred CC
Q 023305 175 DP 176 (284)
Q Consensus 175 ~~ 176 (284)
..
T Consensus 86 ~~ 87 (127)
T 3i42_A 86 FA 87 (127)
T ss_dssp C-
T ss_pred Cc
Confidence 54
No 152
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=26.26 E-value=43 Score=29.54 Aligned_cols=42 Identities=14% Similarity=-0.138 Sum_probs=31.8
Q ss_pred CCCcHHHHHHHhhCC-------CCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 5 LPGSFSEDAALKAYP-------KCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~-------~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
|.||-++.....++. +.++++. ++.+++.++.+|++|.++++
T Consensus 125 ~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 173 (348)
T 3uif_A 125 HRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGTVDGFFSL 173 (348)
T ss_dssp CTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTSSSEEEES
T ss_pred cCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCCCCEEEec
Confidence 578888877666542 2455655 68899999999999998875
No 153
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=24.73 E-value=3.2e+02 Score=23.09 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=62.2
Q ss_pred hCCCCceee-cCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeee-cCC-CCcCCc
Q 023305 17 AYPKCETVP-CDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLA-LPG-IKADQL 93 (284)
Q Consensus 17 ~f~~~~~~~-~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~-~~~-~~l~~i 93 (284)
.+|+.++.. ..+..++.+.+.+|++|+|++.......+... ..|.+.++. ++.+-.|-|.. ... .+++|+
T Consensus 115 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~~~l~~---~~L~~~~~~----~v~~~~hpl~~~~~~~i~~~dL 187 (313)
T 2h98_A 115 QNPEIHIELIECGTKDQINALKQGKIDLGFGRLKITDPAIRR---IMLHKEQLK----LAIHKHHHLNQFAATGVHLSQI 187 (313)
T ss_dssp HCTTSEEEEEECCHHHHHHHHHHTSCSEEEESSCCCCTTEEE---EEEEEEEEE----EEEETTSGGGGGTTSCBCGGGG
T ss_pred HCCCeEEEEEeCChHHHHHHHHcCCCCEEEEeCCCCCCCeeE---EEeeeCcEE----EEEcCCCcccccCCCCcCHHHH
Confidence 367766533 44578899999999999999853211111000 011111111 12233343433 222 334444
Q ss_pred ---cEEEecH----HHHHHHHHHHHhcCCe---EEecCCHHHHHHHHHhcCCCCeEEEcchhHH
Q 023305 94 ---KRVLSHP----QALASSDIVLTQLGVA---RENVDDTASAAQYVASNGLRDAGAVASARAA 147 (284)
Q Consensus 94 ---~~V~SHp----qal~Qc~~fl~~~~~~---~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa 147 (284)
.-|.-.+ ....+...|+.+.++. ...++|...+.++|+.+. ..|+.+...+
T Consensus 188 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~---Gia~lp~~~~ 248 (313)
T 2h98_A 188 IDEPMLLYPVSQKPNFATFIQSLFTELGLVPSKLTEIREIQLALGLVAAGE---GVCIVPASAM 248 (313)
T ss_dssp TTSCEEECCCSSSSSHHHHHHHHHHHTTCCCSCEEECSCHHHHHHHHHTTS---CBEEEEGGGG
T ss_pred cCCCEEEecCCCCchHHHHHHHHHHHcCCCCCceEEeCCHHHHHHHHHcCC---cEEEeehhhh
Confidence 3444222 2234456677665542 356777777777777652 3566666544
No 154
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=24.66 E-value=63 Score=26.41 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=28.8
Q ss_pred ceEEEEEE-ecCCCchHHHHHHHHHhCCceeeeee
Q 023305 185 FKTSIVFT-LDEGPGVLFKALAVFALREINLTKIE 218 (284)
Q Consensus 185 ~ktsi~f~-~~~~pGaL~~~L~~F~~~~INLt~Ie 218 (284)
.|.|++-. .++.||.+.++++.+++.|||+..|-
T Consensus 97 a~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 97 GKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp EEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence 36777643 57899999999999999999998887
No 155
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=23.72 E-value=1.2e+02 Score=22.07 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=26.1
Q ss_pred EEEEEeecCCCcHHHHHHHHHHHhcCCceEEEc
Q 023305 244 LFYIDFEASMADPRAQNALGHLQEFATFLRVLG 276 (284)
Q Consensus 244 ~F~id~eg~~~d~~~~~al~~L~~~~~~vkvLG 276 (284)
.+.|++.|. +.+++++++-|++....+.++|
T Consensus 68 ~L~v~l~G~--~~~~~~ai~~L~~~~v~vEvlg 98 (101)
T 2qrr_A 68 MMVAELFGN--EQDDSAAIEYLRENNVKVEVLG 98 (101)
T ss_dssp EEEEEEESC--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEeCC--HHHHHHHHHHHHHcCCEEEEec
Confidence 477899884 4678999999999998899987
No 156
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.30 E-value=91 Score=22.86 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=50.2
Q ss_pred EEecHHHHHHHHHHHHhcCCe--EEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccCCCCCeeEEEEEe
Q 023305 96 VLSHPQALASSDIVLTQLGVA--RENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLA 173 (284)
Q Consensus 96 V~SHpqal~Qc~~fl~~~~~~--~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF~vl~ 173 (284)
|-.++......+.+|.+.+.. ...+.|..+|.+.+.+. .++ ..|........-|++++..=-+......+++++++
T Consensus 11 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~-~~d-lii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 11 VEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA-KYD-LIILDIGLPIANGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC-CCS-EEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred EeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC-CCC-EEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Confidence 445788888899999887765 66777888888887664 344 44544443455566655432222234467788887
Q ss_pred eCC
Q 023305 174 RDP 176 (284)
Q Consensus 174 ~~~ 176 (284)
...
T Consensus 89 ~~~ 91 (144)
T 3kht_A 89 DNV 91 (144)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
No 157
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=23.16 E-value=1e+02 Score=22.04 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=47.8
Q ss_pred ccEEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccCCCCCeeEEEEE
Q 023305 93 LKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVL 172 (284)
Q Consensus 93 i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF~vl 172 (284)
|--|=.+|......+.+|.+.+.....+.|..+|.+.+.+. .++ ..|.........|++++.. +... ...+.++++
T Consensus 10 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~d-lvi~d~~l~~~~g~~~~~~-l~~~-~~~~~ii~~ 85 (130)
T 3eod_A 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-TPD-LMICDIAMPRMNGLKLLEH-IRNR-GDQTPVLVI 85 (130)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC-CCS-EEEECCC-----CHHHHHH-HHHT-TCCCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC-CCC-EEEEecCCCCCCHHHHHHH-HHhc-CCCCCEEEE
Confidence 33444678888888899998888887788888888887654 344 4454444345556665543 2221 224566666
Q ss_pred eeCC
Q 023305 173 ARDP 176 (284)
Q Consensus 173 ~~~~ 176 (284)
+...
T Consensus 86 t~~~ 89 (130)
T 3eod_A 86 SATE 89 (130)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 6543
No 158
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=22.65 E-value=2.1e+02 Score=20.52 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=49.0
Q ss_pred ccEEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHh-cCCCCeEEEcchhHHHhcCCceeeccccCCCCCeeEEEE
Q 023305 93 LKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVAS-NGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLV 171 (284)
Q Consensus 93 i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~-~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF~v 171 (284)
|--|=.++....+.+.+|.+.+.....+.+..+|.+.+.+ . .++ ..|........-|++++.. +.. ....+++++
T Consensus 18 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~-~~d-lvilD~~l~~~~g~~~~~~-l~~-~~~~~~ii~ 93 (138)
T 2b4a_A 18 VTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS-TCD-LLIVSDQLVDLSIFSLLDI-VKE-QTKQPSVLI 93 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG-SCS-EEEEETTCTTSCHHHHHHH-HTT-SSSCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC-CCC-EEEEeCCCCCCCHHHHHHH-HHh-hCCCCCEEE
Confidence 3344557888888899998888877777888888877765 4 344 3343332223344444332 332 234688999
Q ss_pred Ee-eCC
Q 023305 172 LA-RDP 176 (284)
Q Consensus 172 l~-~~~ 176 (284)
++ ...
T Consensus 94 ls~~~~ 99 (138)
T 2b4a_A 94 LTTGRH 99 (138)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 98 654
No 159
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=22.40 E-value=53 Score=24.05 Aligned_cols=78 Identities=13% Similarity=0.191 Sum_probs=49.1
Q ss_pred EEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccCC-CCCeeEEEEEe
Q 023305 95 RVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDE-PDNITRFLVLA 173 (284)
Q Consensus 95 ~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~ 173 (284)
-|=.++......+.+|.+.+.....+.|..+|.+.+.+.. ++ ..|........-|++++.. |... ....+.+++++
T Consensus 11 ivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~-~d-lvi~d~~l~~~~g~~~~~~-l~~~~~~~~~~ii~~s 87 (140)
T 3grc_A 11 ICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP-YA-AMTVDLNLPDQDGVSLIRA-LRRDSRTRDLAIVVVS 87 (140)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC-CS-EEEECSCCSSSCHHHHHHH-HHTSGGGTTCEEEEEC
T ss_pred EEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC-CC-EEEEeCCCCCCCHHHHHHH-HHhCcccCCCCEEEEe
Confidence 3445788888899999988888888888888888887653 44 3444333233444544432 2221 23456777776
Q ss_pred eC
Q 023305 174 RD 175 (284)
Q Consensus 174 ~~ 175 (284)
..
T Consensus 88 ~~ 89 (140)
T 3grc_A 88 AN 89 (140)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 160
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=22.36 E-value=1e+02 Score=30.19 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=30.4
Q ss_pred eEEEEE-EecCCCchHHHHHHHHHhCCceeeeeeeeeCC
Q 023305 186 KTSIVF-TLDEGPGVLFKALAVFALREINLTKIESRPQR 223 (284)
Q Consensus 186 ktsi~f-~~~~~pGaL~~~L~~F~~~~INLt~IeSRP~~ 223 (284)
.+.|.+ .++++||...++++.++++|||.--|..-+..
T Consensus 444 ~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~ 482 (600)
T 3l76_A 444 QAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRC 482 (600)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccc
Confidence 344443 57899999999999999999999888665543
No 161
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=22.29 E-value=69 Score=27.59 Aligned_cols=113 Identities=11% Similarity=0.038 Sum_probs=65.1
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeecccceeeccccccccCCeEEEEEEEEeeeeEeeecCCCCcCCccEEEec-
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNYDLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSH- 99 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~d~L~~~~l~I~~E~~l~I~~~L~~~~~~~l~~i~~V~SH- 99 (284)
+++..+.+.+++.+++.+|++|++++|..-.... ++ ...++.+++-...- ...|++++. |. =|+|...
T Consensus 35 v~~~~~~~~~~~~~al~~G~~D~~~~~~~~~~~~-----~~--~g~~~~i~~~~~~g-~~~lv~~~~--Lk-GK~Iav~~ 103 (283)
T 3hn0_A 35 VQVKVVDSPDLAQALLIKQETDIAVLPMINAANL-----YN--KGIKIKLAGCPIWG-TLYLVEKTP--LK-EPALYVFG 103 (283)
T ss_dssp EEEEEESCHHHHHHHHHTTCCSEEEEEHHHHHHH-----HH--TTCSCEEEEEEECC-CCEEEECSS--CC-SCCEECSS
T ss_pred EEEEEeCCHHHHHHHHHCCCCCEEEEcHHHHHHH-----HH--CCCCeEEEEEeccc-EEEEEecCC--CC-CCEEEecC
Confidence 4678899999999999999999999975421100 00 01244554432211 123444432 32 2466643
Q ss_pred H--HHHHHHHHHHHhcCC--eEEecC-CHHHHHHHHHhcCCCCeEEEcchh
Q 023305 100 P--QALASSDIVLTQLGV--ARENVD-DTASAAQYVASNGLRDAGAVASAR 145 (284)
Q Consensus 100 p--qal~Qc~~fl~~~~~--~~~~~~-sTa~Aa~~v~~~~~~~~aAI~s~~ 145 (284)
+ .+..-.+.+|++.++ +.+... +.+++...+..+ .-+.+++....
T Consensus 104 ~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G-~vDa~~~~eP~ 153 (283)
T 3hn0_A 104 NGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAG-KVNRAVLGEPF 153 (283)
T ss_dssp TTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHT-SCSEEEECTTH
T ss_pred CCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcC-CCCEEEecccH
Confidence 2 234445677877664 455555 677777777765 34555554443
No 162
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=22.19 E-value=83 Score=22.75 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=48.9
Q ss_pred ccEEEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccCCCCCeeEEEEE
Q 023305 93 LKRVLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVL 172 (284)
Q Consensus 93 i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~~~N~TRF~vl 172 (284)
|--|=.++......+.+|++.++....+.+..+|...+.+...++ ..|........-|++++.. |.......++++++
T Consensus 10 ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~d-lvi~D~~l~~~~g~~~~~~-l~~~~~~~~~ii~~ 87 (136)
T 3hdv_A 10 VLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIG-LMITDLRMQPESGLDLIRT-IRASERAALSIIVV 87 (136)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEE-EEEECSCCSSSCHHHHHHH-HHTSTTTTCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCc-EEEEeccCCCCCHHHHHHH-HHhcCCCCCCEEEE
Confidence 334445788888899999988888888888888888887653233 3443332223334444332 32222334666666
Q ss_pred eeCC
Q 023305 173 ARDP 176 (284)
Q Consensus 173 ~~~~ 176 (284)
+...
T Consensus 88 s~~~ 91 (136)
T 3hdv_A 88 SGDT 91 (136)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 6543
No 163
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=22.08 E-value=1.5e+02 Score=28.54 Aligned_cols=99 Identities=11% Similarity=0.053 Sum_probs=58.5
Q ss_pred HhcCCceeeccccCCCCCeeEEEEEeeCC-CCCC-C---CCCceEEEEEE---ecCCCchHHHHHHHHHhCCceeeeeee
Q 023305 148 EIYGLNILADRIQDEPDNITRFLVLARDP-IIPR-T---DKLFKTSIVFT---LDEGPGVLFKALAVFALREINLTKIES 219 (284)
Q Consensus 148 ~~ygL~il~~~I~d~~~N~TRF~vl~~~~-~~~~-~---~~~~ktsi~f~---~~~~pGaL~~~L~~F~~~~INLt~IeS 219 (284)
..+|.++.-.+-.+...-=|.|. .... ..+. . ...+-+.|-+. .++.||.+.++++.|+++|||+-.|-|
T Consensus 300 ~~~gIpv~I~n~~~p~~~GT~I~--~~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~s 377 (510)
T 2cdq_A 300 REGEIPVRVKNSYNPKAPGTIIT--KTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT 377 (510)
T ss_dssp HHHTCCEEEEETTSTTSCCEEEE--SCCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHCCCeEEEEccCcCCCCCeEEe--ccccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEe
Confidence 45688888777665444457663 2111 1110 0 11223444444 356899999999999999999999954
Q ss_pred eeCCCCCCccccCCCCCCCccceeEEEEEeecC----CCcHHHHHHHHHHHh
Q 023305 220 RPQRKRPLRVVDDSNNGTAKYFDYLFYIDFEAS----MADPRAQNALGHLQE 267 (284)
Q Consensus 220 RP~~~~~~~~~~~~~~g~~~~~~y~F~id~eg~----~~d~~~~~al~~L~~ 267 (284)
- . -...|.|+-+.. .....+..++++|..
T Consensus 378 s----e---------------~sis~~v~~~~~~~~~~~~~~l~~~~~el~~ 410 (510)
T 2cdq_A 378 S----E---------------VSISLTLDPSKLWSRELIQQELDHVVEELEK 410 (510)
T ss_dssp E----T---------------TEEEEEECCGGGSSSCCCHHHHHHHHHHHTT
T ss_pred C----C---------------CeEEEEEechHhhhhhHHHHHHHHHHHHhCC
Confidence 2 1 257788874321 112455666666654
No 164
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=22.05 E-value=88 Score=28.37 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=26.2
Q ss_pred CCCceeecCCHHHHHHHHHhCCCCeEEEe
Q 023305 19 PKCETVPCDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 19 ~~~~~~~~~s~~~v~~av~~~~~d~gvvP 47 (284)
+..+.+.-.+..++++++.+|++|++.++
T Consensus 33 ~~vecv~~~~~~~ci~aI~~g~AD~~~ld 61 (334)
T 1h45_A 33 PPVSCIKRDSPIQCIQAIAENRADAVTLD 61 (334)
T ss_dssp CCEEEEECSSHHHHHHHHHTTSCCBEEEC
T ss_pred CceEEEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 45678999999999999999999999885
No 165
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=21.98 E-value=58 Score=27.82 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=46.3
Q ss_pred CCCcHHHHHHHhhCCC----CceeecCCHHHHHHHHHh--CCCCeEEEeeeecccceeeccccccc----cCCeEEEEEE
Q 023305 5 LPGSFSEDAALKAYPK----CETVPCDEFEDTFKAVEL--WLADKAVLPIENSSSGSIHRNYDLLL----RHRLHIVGEV 74 (284)
Q Consensus 5 p~GtfS~~Aa~~~f~~----~~~~~~~s~~~v~~av~~--~~~d~gvvPiENS~~G~V~~t~d~L~----~~~l~I~~E~ 74 (284)
..|+..+....+.+++ .+....++.++++++|.+ |++|..+..-. +++.+. ..++.++++.
T Consensus 176 ~~gs~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~~~---------~~~~~~~~~~~~~l~~~~~~ 246 (294)
T 2rc8_A 176 VRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKA---------LLDYEVSIDADCKLLTVGKP 246 (294)
T ss_dssp BTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEHH---------HHHHHHHTCSSSCEEECSCC
T ss_pred EcCChHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEecHH---------HHHHHHhhCCCCCEEEcCCc
Confidence 4577777666665543 223468999999999999 99998876421 122111 1246666655
Q ss_pred EEeeeeEeeecCC
Q 023305 75 QLAANFCLLALPG 87 (284)
Q Consensus 75 ~l~I~~~L~~~~~ 87 (284)
.-+..++++.+++
T Consensus 247 ~~~~~~~ia~~k~ 259 (294)
T 2rc8_A 247 FAIEGYGIGLPPN 259 (294)
T ss_dssp EEEEEECCEECTT
T ss_pred ccccceEEEecCC
Confidence 4455556666554
No 166
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=21.69 E-value=61 Score=23.32 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=45.1
Q ss_pred EEecHHHHHHHHHHHHhcCCeEEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccCC-CCCeeEEEEEee
Q 023305 96 VLSHPQALASSDIVLTQLGVARENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDE-PDNITRFLVLAR 174 (284)
Q Consensus 96 V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d~-~~N~TRF~vl~~ 174 (284)
|=.+|......+.+|++.+.+...+.|..+|.+.+.+. .++ ..|.--.--..-|++++.. +... ....+.+++++.
T Consensus 8 vdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~-~~d-lvllD~~~p~~~g~~~~~~-l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 8 VDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF-TPD-LIVLXIMMPVMDGFTVLKK-LQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB-CCS-EEEECSCCSSSCHHHHHHH-HHTSTTTTTSCEEEEES
T ss_pred EeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc-CCC-EEEEeccCCCCcHHHHHHH-HHhcccccCCCEEEEec
Confidence 33578888888889988888888888888888887654 343 3343322223344444432 2211 223355666654
Q ss_pred C
Q 023305 175 D 175 (284)
Q Consensus 175 ~ 175 (284)
.
T Consensus 85 ~ 85 (122)
T 3gl9_A 85 K 85 (122)
T ss_dssp C
T ss_pred C
Confidence 3
No 167
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=21.53 E-value=4.4e+02 Score=23.60 Aligned_cols=115 Identities=16% Similarity=0.138 Sum_probs=64.4
Q ss_pred EEEecHHHHHHHHHHHHhc-----CCeEEecCCHHHHHHHHHhcCCCCeEEEcchh--HH--HhcCCceeeccccCCC-C
Q 023305 95 RVLSHPQALASSDIVLTQL-----GVARENVDDTASAAQYVASNGLRDAGAVASAR--AA--EIYGLNILADRIQDEP-D 164 (284)
Q Consensus 95 ~V~SHpqal~Qc~~fl~~~-----~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~--aa--~~ygL~il~~~I~d~~-~ 164 (284)
.|.|+.+ +..|+.|-... .++.+...|+.+.++.+..+ .-+.+.+.+.. .| +.|||+.+.....+.. +
T Consensus 10 Cv~s~~E-~~KC~~l~~~~~~~~~~veCv~~~s~~~Ci~aI~~g-~aD~~~ld~~~~~~A~~~~~~l~pi~~e~~~~~~~ 87 (332)
T 1iej_A 10 CTISSPE-EKKCNNLRDLTQQERISLTCVQKATYLDCIKAIANN-EADAITLDGGQVFEAGLAPYKLKPIAAEVYEHTEG 87 (332)
T ss_dssp EESSHHH-HHHHHHHHHHTTTSSEEEEEEECSSHHHHHHHHHTT-SCCBEEECHHHHHHHTSTTTCCEEEEEEEEECSSS
T ss_pred EECCHHH-HHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHcC-CCcEEEeCccceeEecccccCCEEEEEEEecCCCC
Confidence 3556555 88999887663 36678899999999999986 35667775443 33 4589977664444321 1
Q ss_pred CeeEE--EEEeeCCCCCC-CCCCceEEEEEEecCCCchHHHHHHHHHhCCc
Q 023305 165 NITRF--LVLARDPIIPR-TDKLFKTSIVFTLDEGPGVLFKALAVFALREI 212 (284)
Q Consensus 165 N~TRF--~vl~~~~~~~~-~~~~~ktsi~f~~~~~pGaL~~~L~~F~~~~I 212 (284)
..++| ++|.|++..-. .+-..|++-.-.+....|-+.= +..+..+|+
T Consensus 88 ~~~~Y~aVaVVkkdS~isl~dLkGKksChtg~~stsGw~~P-i~~L~~~g~ 137 (332)
T 1iej_A 88 STTSYYAVAVVKKGTEFTVNDLQGKTSCHTGLGRSAGWNIP-IGTLLHRGA 137 (332)
T ss_dssp EESEEEEEEEEETTCCCCGGGCTTCEEEESCTTCTTTTHHH-HHHHHHTTS
T ss_pred CCCceEEEEEEeCCCCCCHHHHCCCceEcCCCCCccchHHH-HHHHHHcCC
Confidence 12333 44445542111 1112244333233334666554 444455554
No 168
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=21.33 E-value=43 Score=28.51 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=25.7
Q ss_pred ceeEEEEEee---cCCCcHHHHHHHHHHHhcCCceEEEceeeCCC
Q 023305 241 FDYLFYIDFE---ASMADPRAQNALGHLQEFATFLRVLGCYPMDA 282 (284)
Q Consensus 241 ~~y~F~id~e---g~~~d~~~~~al~~L~~~~~~vkvLGsYp~~~ 282 (284)
++|.+|||-+ ..-+.+.+.++++. .. =-|.|+||...
T Consensus 54 ~dhllfIDAD~~~I~FdPe~V~rLl~~----g~-DVV~GsYp~K~ 93 (203)
T 2c0n_A 54 YDTLAFLDEDVVPIEIDFQKVEAKFNE----GY-DVVCGYYYLKT 93 (203)
T ss_dssp CCEEEEECTTEEEEECCHHHHHHHHHH----TC-SEEEEECBCTT
T ss_pred CCEEEEEeCCCCccccCHHHHHHHHhC----CC-CEEEEEeeccC
Confidence 7899999988 66565666666622 22 23789999753
No 169
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=21.25 E-value=1.4e+02 Score=23.40 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=24.4
Q ss_pred hCCCCceee-cCCHHHHHHHHHhCCCCeEEEe
Q 023305 17 AYPKCETVP-CDEFEDTFKAVELWLADKAVLP 47 (284)
Q Consensus 17 ~f~~~~~~~-~~s~~~v~~av~~~~~d~gvvP 47 (284)
.+|+.++.. ..+..++.+++.+|++|+|++.
T Consensus 30 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~ 61 (219)
T 1i6a_A 30 TFPKLEMYLHEAQTHQLLAQLDSGKLDAVILA 61 (219)
T ss_dssp HCTTEEEEEEECCHHHHHHHHHHTSCSEEEEE
T ss_pred HCCCeEEEEEECChHHHHHHHHcCCeeEEEec
Confidence 467766543 3577899999999999999985
No 170
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=21.22 E-value=1.4e+02 Score=21.78 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=26.0
Q ss_pred EEEEEeecCCCcHHHHHHHHHHHhcCCceEEEc
Q 023305 244 LFYIDFEASMADPRAQNALGHLQEFATFLRVLG 276 (284)
Q Consensus 244 ~F~id~eg~~~d~~~~~al~~L~~~~~~vkvLG 276 (284)
.+.|++.|. ++.+++++++-|++....|.++|
T Consensus 65 ~L~v~l~G~-~~~~~~~ai~~L~~~~v~vEvlg 96 (98)
T 3ced_A 65 FLVLHIPYI-SSVDFGKFEKELIERQVKMEVLR 96 (98)
T ss_dssp EEEEEESCC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEeCC-CHHHHHHHHHHHHHCCCEEEEec
Confidence 377888873 34678999999999988899987
No 171
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=21.18 E-value=2.5e+02 Score=24.55 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=64.8
Q ss_pred CceeecCCHHHHHHHHHhCCCCeEEEeeeec---ccceeeccccc-cccCCeEEEEEEEEeeeeEeeecCCC---CcCCc
Q 023305 21 CETVPCDEFEDTFKAVELWLADKAVLPIENS---SSGSIHRNYDL-LLRHRLHIVGEVQLAANFCLLALPGI---KADQL 93 (284)
Q Consensus 21 ~~~~~~~s~~~v~~av~~~~~d~gvvPiENS---~~G~V~~t~d~-L~~~~l~I~~E~~l~I~~~L~~~~~~---~l~~i 93 (284)
+++.+...-.+.+.++.+|++|++++..... ..|.. .++- -...++..++-+.- -...|+++++. +++|+
T Consensus 68 v~v~~~~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~--~f~~~~~~~d~~~v~~~~~-~~~~lvv~~ds~i~sl~DL 144 (327)
T 4ddd_A 68 CSISSTTGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLG--FYEKMLPMDNLRMLASLHK-EYLTIVVKKSSNISVIDDI 144 (327)
T ss_dssp EEEECCCCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCG--GGTTSCCCTTEEEEEEEEE-EEEEEEEETTSSCCSGGGG
T ss_pred EEEEecCcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcC--cccccCCCcchhehhccCC-ccEEEEEECCCCCCCHHHh
Confidence 4556677788999999999999998864311 11110 0110 01235776666554 44567776653 34454
Q ss_pred c--EEEe-cHH--HHHHHHHHHHhcCCe-----EEecCCHHHHHHHHHhcC
Q 023305 94 K--RVLS-HPQ--ALASSDIVLTQLGVA-----RENVDDTASAAQYVASNG 134 (284)
Q Consensus 94 ~--~V~S-Hpq--al~Qc~~fl~~~~~~-----~~~~~sTa~Aa~~v~~~~ 134 (284)
+ +|.- .+- .....+.++++.+++ .++..+.+++...+..++
T Consensus 145 ~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~ 195 (327)
T 4ddd_A 145 KGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNK 195 (327)
T ss_dssp TTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTS
T ss_pred CCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCC
Confidence 3 4433 221 123345677766653 467778899998888763
No 172
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=21.13 E-value=1.1e+02 Score=22.11 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=26.0
Q ss_pred EEEEEeecCCCcHHHHHHHHHHHhcCCceEEEc
Q 023305 244 LFYIDFEASMADPRAQNALGHLQEFATFLRVLG 276 (284)
Q Consensus 244 ~F~id~eg~~~d~~~~~al~~L~~~~~~vkvLG 276 (284)
.+.|++.|. +.+++++++-|++....+.++|
T Consensus 68 ~L~v~l~G~--~~~~~~ai~~L~~~~v~vEvlg 98 (100)
T 2qsw_A 68 SLYIQLLGE--EQNILAAIEGLRKLRVETEVIG 98 (100)
T ss_dssp EEEEEEESC--HHHHHHHHHHHHHTTCEEEESS
T ss_pred EEEEEEECC--HHHHHHHHHHHHHcCCEEEEcc
Confidence 477899884 4678999999999988898886
No 173
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=21.13 E-value=87 Score=22.58 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=45.6
Q ss_pred EEecHHHHHHHHHHHHhcCCe-EEecCCHHHHHHHHHhcCCCCeEEEcchhHHHhcCCceeeccccC-CCCCeeEEEEEe
Q 023305 96 VLSHPQALASSDIVLTQLGVA-RENVDDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQD-EPDNITRFLVLA 173 (284)
Q Consensus 96 V~SHpqal~Qc~~fl~~~~~~-~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il~~~I~d-~~~N~TRF~vl~ 173 (284)
|=.+|......+.+|++.+.. ...+.+..+|.+.+.....++ ..|........-|++++.. +.. .....+.+++++
T Consensus 11 vdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~d-lvi~D~~~p~~~g~~~~~~-lr~~~~~~~~pii~~s 88 (129)
T 3h1g_A 11 VDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTK-VLITDWNMPEMNGLDLVKK-VRSDSRFKEIPIIMIT 88 (129)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCC-EEEECSCCSSSCHHHHHHH-HHTSTTCTTCCEEEEE
T ss_pred EeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCC-EEEEeCCCCCCCHHHHHHH-HHhcCCCCCCeEEEEe
Confidence 445788888899999888775 667778888888776653343 3443322223344444432 222 122345666666
Q ss_pred eC
Q 023305 174 RD 175 (284)
Q Consensus 174 ~~ 175 (284)
..
T Consensus 89 ~~ 90 (129)
T 3h1g_A 89 AE 90 (129)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 174
>1h45_A Lactoferrin; metal transport, iron transport, metal binding; 1.95A {Homo sapiens} SCOP: c.94.1.2 PDB: 1eh3_A 2pms_A* 1h43_A 1h44_A 1dsn_A 1lct_A 1hse_A 1vfe_A 1l5t_A 1vfd_A 1lgb_C* 1z6v_A 1z6w_A
Probab=20.02 E-value=4.6e+02 Score=23.50 Aligned_cols=68 Identities=19% Similarity=0.141 Sum_probs=47.8
Q ss_pred Ccc-EEEecHHHHHHHHHHHHh------cCCeEEecCCHHHHHHHHHhcCCCCeEEEcchh--HHH--hcCCceeecccc
Q 023305 92 QLK-RVLSHPQALASSDIVLTQ------LGVARENVDDTASAAQYVASNGLRDAGAVASAR--AAE--IYGLNILADRIQ 160 (284)
Q Consensus 92 ~i~-~V~SHpqal~Qc~~fl~~------~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~--aa~--~ygL~il~~~I~ 160 (284)
.|+ .|.|+.+ +.-|+.|-.. ..++.+...|+.+.++.++.+ .-+.+.+.+.. .|. .|||..+.....
T Consensus 6 ~vrwCv~s~~e-~~KC~~l~~~~~~~~~~~vecv~~~~~~~ci~aI~~g-~AD~~~ld~~~~~~A~~~~~~l~pi~~e~~ 83 (334)
T 1h45_A 6 SVQWCAVSQPE-ATKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAEN-RADAVTLDGGFIYEAGLAPYKLRPVAAEVY 83 (334)
T ss_dssp SEEEEESSHHH-HHHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHTT-SCCBEEECHHHHHHHHSTTTCEEEEEEEEE
T ss_pred cEEEEECCHHH-HHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHHcC-CCCEEEeCccceEEeecCccCCEEEEEEee
Confidence 355 4567765 8899998765 146788999999999999986 35677775533 343 489988775544
Q ss_pred C
Q 023305 161 D 161 (284)
Q Consensus 161 d 161 (284)
+
T Consensus 84 ~ 84 (334)
T 1h45_A 84 G 84 (334)
T ss_dssp E
T ss_pred c
Confidence 3
Done!