RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 023305
         (284 letters)



>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 184

 Score =  144 bits (365), Expect = 1e-43
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 6/180 (3%)

Query: 3   QGLPGSFSEDAALKAYPKCET--VPCDEFEDTFKAVELWLADKAVLPIENSSSGSIHRNY 60
            G  G+FS  A  + + + E    P     +  KAV        V+PIENS  G+I+   
Sbjct: 6   LGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVA 65

Query: 61  DLLLRHRLHIVGEVQLAANFCLLALPGIKADQLKRVLSHPQALASSDIVLTQLGVARENV 120
           D L +  +   GE++L  NF L          +K+V S   A++ +   + Q     + V
Sbjct: 66  DALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYV 125

Query: 121 DDTASAAQYVASNGLRDAGAVASARAAEIYGLNILADRIQDEPDNITRFLVLARDPIIPR 180
           D T  +   +         A+A   + E YG   +   I+D P N+TRFLV+       +
Sbjct: 126 DSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQQQFDQ 181


>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
           domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 80

 Score = 85.2 bits (211), Expect = 6e-22
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 187 TSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYFDYLFY 246
             ++  + + PG+L   L  FAL  INL+ IESRP + +                 Y F+
Sbjct: 3   MFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL--------------GMYRFF 48

Query: 247 IDFEASMADPRAQNALGHLQEFATFLRVLGCY 278
           +  ++++     +  +  L+     + ++G +
Sbjct: 49  VQADSAITTD-IKKVIAILETLDFKVEMIGAF 79


>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal
           domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 97

 Score = 79.9 bits (197), Expect = 8e-20
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 16/98 (16%)

Query: 182 DKLFKTSIVFTLDEGPGVLFKALAVFALREINLTKIESRPQRKRPLRVVDDSNNGTAKYF 241
           ++    S++F+L E  G L K L +F   +INLT IESRP R                  
Sbjct: 12  NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK--------------D 57

Query: 242 DYLFYIDFEASMADPRAQNALGHL-QEFATFLRVLGCY 278
           +Y F+   +     P   + +  L  +    +  L   
Sbjct: 58  EYEFFTYLDK-RTKPVLGSIIKSLRNDIGATVHELSRD 94


>d1p5dx2 c.84.1.1 (X:155-258) Phosphomannomutase/phosphoglucomutase
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 104

 Score = 25.0 bits (54), Expect = 5.7
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 214 LTKIESRPQRKRPLRVVDDSNNGTA 238
             +I       +P++VV D  NG A
Sbjct: 6   FKQIRDDIAMAKPMKVVVDCGNGVA 30


>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 77

 Score = 23.9 bits (52), Expect = 9.2
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 187 TSIVFTLDEGPGVLFKALAVFALREINLTKIESR 220
             +    +   GVL     + A    N+T  ++ 
Sbjct: 2   RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTF 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.395 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,004,075
Number of extensions: 44786
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 5
Length of query: 284
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,254,276
Effective search space: 250855200
Effective search space used: 250855200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)