BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023306
         (284 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2P70|A Chain A, Bombyx Mori Pheromone Binding Protein Bound To Bell Pepper
           Odorant
 pdb|2P71|A Chain A, Bombyx Mori Pheromone Binding Protein Bound To
           Iodohexadecane
          Length = 132

 Score = 29.3 bits (64), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 182 LQLGVAIEALKDQTTVGYAVFQSVYHYWKEKASVNDGRNLYCGVCSLRHQL 232
           L  G A++  K + T+  A+ +  Y++WKE   + + R   C +  L  +L
Sbjct: 10  LNFGKALDECKKEMTLTDAINEDFYNFWKEGYEIKN-RETGCAIMCLSTKL 59


>pdb|2E5I|A Chain A, Solution Structure Of Rna Binding Domain 2 In
           Heterogeneous Nuclear Ribonucleoprotein L-Like
          Length = 124

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 202 FQSVYHYWKEKASVNDGRNLYCGVCSLRHQLMIPTHI 238
           F+SV    K KA++N G ++Y G C+L+ +   PT +
Sbjct: 69  FESVLCAQKAKAALN-GADIYAGCCTLKIEYARPTRL 104


>pdb|1DQE|A Chain A, Bombyx Mori Pheromone Binding Protein
 pdb|1DQE|B Chain B, Bombyx Mori Pheromone Binding Protein
          Length = 137

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 182 LQLGVAIEALKDQTTVGYAVFQSVYHYWKEKASVNDGRNLYCGVCSLRHQL 232
           L  G A++  K + T+  A+ +  Y++WKE   + + R   C +  L  +L
Sbjct: 10  LNFGKALDECKKEMTLTDAINEDFYNFWKEGYEIKN-RETGCAIMCLSTKL 59


>pdb|2FJY|A Chain A, Crystal Structure Of B-Form Bombyx Mori Pheromone Binding
           Protein
 pdb|2FJY|B Chain B, Crystal Structure Of B-Form Bombyx Mori Pheromone Binding
           Protein
          Length = 142

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 182 LQLGVAIEALKDQTTVGYAVFQSVYHYWKEKASVNDGRNLYCGVCSLRHQL 232
           L  G A++  K + T+  A+ +  Y++WKE   + + R   C +  L  +L
Sbjct: 10  LNFGKALDECKKEMTLTDAINEDFYNFWKEGYEIKN-RETGCAIMCLSTKL 59


>pdb|1GM0|A Chain A, A Form Of The Pheromone-Binding Protein From Bombyx Mori
 pdb|1LS8|A Chain A, Nmr Structure Of The Unliganded Bombyx Mori Pheromone-
           Binding Protein At Physiological Ph
          Length = 142

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 182 LQLGVAIEALKDQTTVGYAVFQSVYHYWKEKASVNDGRNLYCGVCSLRHQL 232
           L  G A++  K + T+  A+ +  Y++WKE   + + R   C +  L  +L
Sbjct: 10  LNFGKALDECKKEMTLTDAINEDFYNFWKEGYEIKN-RETGCAIMCLSTKL 59


>pdb|1XFR|A Chain A, Solution Structure Of The Bombyx Mori Pheromone-Binding
           Protein Fragment Bmpbp(1-128) At Ph 6.5
          Length = 128

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 182 LQLGVAIEALKDQTTVGYAVFQSVYHYWKEKASVNDGRNLYCGVCSLRHQL 232
           L  G A++  K + T+  A+ +  Y++WKE   + + R   C +  L  +L
Sbjct: 10  LNFGKALDECKKEMTLTDAINEDFYNFWKEGYEIKN-RETGCAIMCLSTKL 59


>pdb|2DOU|A Chain A, Probable N-Succinyldiaminopimelate Aminotransferase
           (Ttha0342) From Thermus Thermophilus Hb8
 pdb|2DOU|B Chain B, Probable N-Succinyldiaminopimelate Aminotransferase
           (Ttha0342) From Thermus Thermophilus Hb8
          Length = 376

 Score = 28.5 bits (62), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 161 HKARERA-GLITPTLGS---PIPILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKASVN 216
            KARER  GLI  ++GS   P P    L    EAL D TT GY +      + +E A   
Sbjct: 18  RKARERGVGLIDLSIGSTDLPPPEA-PLKALAEALNDPTTYGYCLKSCTLPFLEEAARWY 76

Query: 217 DGR 219
           +GR
Sbjct: 77  EGR 79


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,683,424
Number of Sequences: 62578
Number of extensions: 276938
Number of successful extensions: 497
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 9
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)