Query 023306
Match_columns 284
No_of_seqs 189 out of 336
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:36:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lv4_A Catestatin, chromograni 88.4 0.24 8.1E-06 29.4 1.8 20 2-21 3-22 (26)
2 4b19_A PEPA1; toxin, toxin apo 67.8 2.8 9.5E-05 25.9 1.8 15 201-215 15-29 (30)
3 1b0n_B Protein (SINI protein); 65.1 2.8 9.5E-05 29.5 1.7 36 125-160 7-43 (57)
4 3dvk_B Voltage-dependent R-typ 39.0 14 0.00048 21.4 1.5 12 204-215 11-22 (23)
5 3dve_B Voltage-dependent N-typ 37.7 12 0.00042 21.6 1.1 12 204-215 10-21 (23)
6 3bxl_B CAM, voltage-dependent 24.8 31 0.0011 20.5 1.3 13 204-216 7-19 (26)
7 2kt9_A Probable 30S ribosomal 21.9 1.4E+02 0.0049 23.6 5.1 47 147-221 46-92 (116)
8 2f8e_A VPG protein; RNA-depend 15.0 43 0.0015 19.6 0.4 16 7-22 9-24 (26)
9 1waz_A MERF; protein structure 12.9 95 0.0032 20.8 1.7 10 204-213 35-44 (46)
10 2kv5_A FST, putative uncharact 12.0 67 0.0023 20.1 0.7 15 201-215 16-30 (33)
No 1
>1lv4_A Catestatin, chromogranin A; glycoprotein, amidation, phosphorylation, signaling protein; NMR {Synthetic} SCOP: j.95.1.1
Probab=88.36 E-value=0.24 Score=29.38 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.8
Q ss_pred CCcccCCCCCCCCCCcceec
Q 023306 2 SRLSIRPRPLDIHKKLPIVK 21 (284)
Q Consensus 2 srlsFR~R~ld~~k~L~I~~ 21 (284)
.|||||+|+-|...|.+-++
T Consensus 3 MKlsFRar~Y~Fr~Pg~~~r 22 (26)
T 1lv4_A 3 MKLSFRARAYGFRGPGPQLX 22 (26)
T ss_dssp SCSCSCCCSSSSCSSCTTC-
T ss_pred ceEeeeeeecccCCCccccc
Confidence 48999999999999987654
No 2
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=67.84 E-value=2.8 Score=25.86 Aligned_cols=15 Identities=13% Similarity=0.556 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhhhh
Q 023306 201 VFQSVYHYWKEKASV 215 (284)
Q Consensus 201 ~~~~VY~YWk~KR~~ 215 (284)
.+.+.|+||++.|.+
T Consensus 15 civalF~hWL~~r~~ 29 (30)
T 4b19_A 15 CAIAFFSYWLSRRNT 29 (30)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccC
Confidence 344899999999865
No 3
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=65.13 E-value=2.8 Score=29.52 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=25.6
Q ss_pred CCChhhHHHHHHHhc-CCCCCCHHHHHHHHHHhhccc
Q 023306 125 DLDNEDEDWLDEFNR-DQKLLPPEKFETLMFKLEVLD 160 (284)
Q Consensus 125 DMDeeDe~WL~~~N~-~r~~lsed~FE~imd~fEk~~ 160 (284)
.+.+-|.+||.-+.. ++..+|-+++..++....+.+
T Consensus 7 ~~~~~d~ewl~LI~~Ak~lGlsleEIrefL~l~~~~~ 43 (57)
T 1b0n_B 7 EHFELDQEWVELMVEAKEANISPEEIRKYLLLNKKSA 43 (57)
T ss_dssp --CCCCHHHHHHHHHHHHTTCCHHHHHHHHHHC----
T ss_pred hhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCC
Confidence 367789999998865 457999999999998877654
No 4
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=38.98 E-value=14 Score=21.37 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=9.8
Q ss_pred HHHHHHHHhhhh
Q 023306 204 SVYHYWKEKASV 215 (284)
Q Consensus 204 ~VY~YWk~KR~~ 215 (284)
-|+|||+..|.+
T Consensus 11 lI~d~~r~~k~r 22 (23)
T 3dvk_B 11 MIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc
Confidence 789999987764
No 5
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=37.74 E-value=12 Score=21.64 Aligned_cols=12 Identities=8% Similarity=0.617 Sum_probs=9.8
Q ss_pred HHHHHHHHhhhh
Q 023306 204 SVYHYWKEKASV 215 (284)
Q Consensus 204 ~VY~YWk~KR~~ 215 (284)
-|++||++.|.+
T Consensus 10 lI~d~~r~~k~~ 21 (23)
T 3dve_B 10 MIFDFYKQNKTS 21 (26)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhhc
Confidence 789999987655
No 6
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=24.82 E-value=31 Score=20.46 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhhc
Q 023306 204 SVYHYWKEKASVN 216 (284)
Q Consensus 204 ~VY~YWk~KR~~~ 216 (284)
-||+||++-+.++
T Consensus 7 mI~e~yrq~K~~r 19 (26)
T 3bxl_B 7 MIMDYYKQSKVKK 19 (26)
T ss_pred HHHHHHHHHHhhh
Confidence 7999998755443
No 7
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=21.91 E-value=1.4e+02 Score=23.62 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhcccHHHhhhhcCCCCCCCCCCCccCCHHHHHHHHhhhcccCchhHHHHHHHHHHhhhhcCCCCc
Q 023306 147 EKFETLMFKLEVLDHKARERAGLITPTLGSPIPILLQLGVAIEALKDQTTVGYAVFQSVYHYWKEKASVNDGRNL 221 (284)
Q Consensus 147 d~FE~imd~fEk~~~~~q~r~g~~~P~l~~d~~~ils~~ea~~~l~~~~~~~~~~~~~VY~YWk~KR~~~gg~pL 221 (284)
|-.|.+=..||.- +-++..+...+|... .+|-+||.+++....++|+
T Consensus 46 DAWe~LK~eLEsK--------------------~WIse~e~i~lLN~~--------TeiIN~WQe~~~~~k~~~~ 92 (116)
T 2kt9_A 46 DAWQQLKDELEAK--------------------HWIAEADRINVLNQA--------TEVINFWQDLKNQNKQISM 92 (116)
T ss_dssp CHHHHHHHHHHHS--------------------TTSCHHHHHHHHHHH--------HHHHHHHHHHHHHTCCCCH
T ss_pred cHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHH--------HHHHHHHHhhhhccccCCH
Confidence 6667777777752 355666666666542 3899999998885445666
No 8
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=15.04 E-value=43 Score=19.60 Aligned_cols=16 Identities=44% Similarity=0.821 Sum_probs=13.3
Q ss_pred CCCCCCCCCCcceecc
Q 023306 7 RPRPLDIHKKLPIVKS 22 (284)
Q Consensus 7 R~R~ld~~k~L~I~~~ 22 (284)
|+++|-++.++|+.+.
T Consensus 9 rq~plkvkak~p~~~~ 24 (26)
T 2f8e_A 9 RQRPLKVKAKLPQAEX 24 (26)
T ss_pred hcCcceeeeccccccc
Confidence 7899999999998653
No 9
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=12.93 E-value=95 Score=20.75 Aligned_cols=10 Identities=10% Similarity=0.487 Sum_probs=8.8
Q ss_pred HHHHHHHHhh
Q 023306 204 SVYHYWKEKA 213 (284)
Q Consensus 204 ~VY~YWk~KR 213 (284)
.+|..|+++|
T Consensus 35 t~ya~~r~~~ 44 (46)
T 1waz_A 35 TIYAIQRKRQ 44 (46)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHc
Confidence 8999999775
No 10
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=11.99 E-value=67 Score=20.06 Aligned_cols=15 Identities=0% Similarity=-0.082 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhhhh
Q 023306 201 VFQSVYHYWKEKASV 215 (284)
Q Consensus 201 ~~~~VY~YWk~KR~~ 215 (284)
++..+.+||+++|..
T Consensus 16 vvl~L~d~WLn~r~~ 30 (33)
T 2kv5_A 16 LVLEMISRVLDEEDD 30 (33)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHccccc
Confidence 455889999999874
Done!