Query 023306
Match_columns 284
No_of_seqs 189 out of 336
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 04:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023306.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023306hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z7aa1 c.6.2.6 (A:4-304) Hypo 35.9 4.4 0.00032 34.8 0.6 87 122-212 206-297 (301)
2 d1vp7a_ a.7.13.1 (A:) Exonucle 26.0 80 0.0058 20.8 5.8 32 148-193 7-38 (68)
3 d2pf5a1 d.169.1.4 (A:1-95) TSG 19.2 34 0.0025 24.2 2.8 29 181-210 13-41 (95)
4 d1f00i3 d.169.1.3 (I:842-939) 18.1 47 0.0034 23.8 3.3 31 180-210 8-41 (98)
5 d1g41a_ c.37.1.20 (A:) HslU {H 17.3 50 0.0036 29.3 4.1 13 201-213 25-38 (443)
6 d1wlza1 a.39.1.7 (A:229-311) D 15.8 70 0.0051 20.7 3.7 17 142-158 51-67 (83)
7 d1lr1a_ a.155.1.1 (A:) H1 prot 15.7 37 0.0027 22.1 2.0 33 132-164 2-40 (57)
8 d2guka1 d.360.1.1 (A:4-114) Hy 12.6 45 0.0033 24.5 1.9 22 199-226 7-29 (111)
9 d1um8a_ c.37.1.20 (A:) ClpX {H 12.1 92 0.0067 26.5 4.3 33 181-213 5-41 (364)
10 d1nv8a_ c.66.1.30 (A:) N5-glut 12.1 30 0.0022 28.8 0.9 39 204-244 53-96 (271)
No 1
>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.89 E-value=4.4 Score=34.76 Aligned_cols=87 Identities=18% Similarity=0.243 Sum_probs=53.2
Q ss_pred ccCCCChhhHHHHHHHhcCCCCCCHHHH-HHHHHHhhcccHHHhhhhcCC----CCCCCCCCCccCCHHHHHHHHhhhcc
Q 023306 122 VEYDLDNEDEDWLDEFNRDQKLLPPEKF-ETLMFKLEVLDHKARERAGLI----TPTLGSPIPILLQLGVAIEALKDQTT 196 (284)
Q Consensus 122 veYDMDeeDe~WL~~~N~~r~~lsed~F-E~imd~fEk~~~~~q~r~g~~----~P~l~~d~~~ils~~ea~~~l~~~~~ 196 (284)
+.|.++-.|-.+... ....+.+.| +.+.|.|+....+.....+++ -|++.--+..+--++++.+.+.+.+.
T Consensus 206 iP~~~~~~D~~~~~~----~~~~~~~~~~~~~~d~fd~l~~e~~~~~~~~~l~lHP~i~G~P~Ri~~Le~~l~~i~~~~d 281 (301)
T d1z7aa1 206 IPYTLDTNDMRFTQV----QGFNNGEQFFQYLKDAFDVLYEEGATAPKMLSIGLHCRLIGRPARMAALERFIQYAQSHDK 281 (301)
T ss_dssp CCCCSSSBGGGGGST----TCCSSHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEETTTTTSHHHHHHHHHHHHHHHTSSS
T ss_pred eccccccchhhhhhc----CCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEeeCCcccCCHHHHHHHHHHHHHHHcCCC
Confidence 668887777554321 234576666 677777876655442221222 27776554556667777777766533
Q ss_pred cCchhHHHHHHHHHHh
Q 023306 197 VGYAVFQSVYHYWKEK 212 (284)
Q Consensus 197 ~~~~~~~~VY~YWk~K 212 (284)
+=.....+|.+||+++
T Consensus 282 VW~at~~eIA~~~~~~ 297 (301)
T d1z7aa1 282 VWFARREDIARHWHRE 297 (301)
T ss_dssp EEECCHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHH
Confidence 3345667999999953
No 2
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=26.05 E-value=80 Score=20.79 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcccHHHhhhhcCCCCCCCCCCCccCCHHHHHHHHhh
Q 023306 148 KFETLMFKLEVLDHKARERAGLITPTLGSPIPILLQLGVAIEALKD 193 (284)
Q Consensus 148 ~FE~imd~fEk~~~~~q~r~g~~~P~l~~d~~~ils~~ea~~~l~~ 193 (284)
.||..|++||.....-. +.-++++++...+..
T Consensus 7 sfEe~l~~LE~IV~~LE--------------~g~l~Leesl~~ye~ 38 (68)
T d1vp7a_ 7 DFETALAELESLVSAME--------------NGTLPLEQSLSAYRR 38 (68)
T ss_dssp SHHHHHHHHHHHHHHHH--------------TTCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHh--------------CCCCCHHHHHHHHHH
Confidence 68888888888764432 235789998877775
No 3
>d2pf5a1 d.169.1.4 (A:1-95) TSG-6, Link module {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.20 E-value=34 Score=24.21 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHhhhcccCchhHHHHHHHHH
Q 023306 181 LLQLGVAIEALKDQTTVGYAVFQSVYHYWK 210 (284)
Q Consensus 181 ils~~ea~~~l~~~~~~~~~~~~~VY~YWk 210 (284)
-++|+||..++... +.+.....+|++=|+
T Consensus 13 ~l~f~eA~~~C~~~-ga~LAt~~QL~~A~~ 41 (95)
T d2pf5a1 13 KLTYAEAKAVCEFE-GGHLATYKQLEAARK 41 (95)
T ss_dssp CBCHHHHHHHHHHT-TCEECCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHc-CCccCCHHHHHHHHH
Confidence 59999999999987 667888889999998
No 4
>d1f00i3 d.169.1.3 (I:842-939) Intimin {Escherichia coli [TaxId: 562]}
Probab=18.10 E-value=47 Score=23.82 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=23.4
Q ss_pred ccCCHHHHHHHHhhh---cccCchhHHHHHHHHH
Q 023306 180 ILLQLGVAIEALKDQ---TTVGYAVFQSVYHYWK 210 (284)
Q Consensus 180 ~ils~~ea~~~l~~~---~~~~~~~~~~VY~YWk 210 (284)
.-+++++|...++.+ .+.....+..||+-|=
T Consensus 8 ~rv~Y~~A~~~C~~~~g~LpsSq~eL~~vy~~WG 41 (98)
T d1f00i3 8 KRVTYNDAVNTCKNFGGKLPSSQNELENVFKAWG 41 (98)
T ss_dssp EEECHHHHHHHHHHTTCBCCSSHHHHHHHHHHHC
T ss_pred CeeEHHHHHHHHHhcCCCCCccHHHHHHHHhccc
Confidence 346899999988875 2334568899999994
No 5
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=17.33 E-value=50 Score=29.26 Aligned_cols=13 Identities=8% Similarity=0.416 Sum_probs=9.5
Q ss_pred hHH-HHHHHHHHhh
Q 023306 201 VFQ-SVYHYWKEKA 213 (284)
Q Consensus 201 ~~~-~VY~YWk~KR 213 (284)
+++ +||+||+..+
T Consensus 25 ~lsvav~nhyrR~~ 38 (443)
T d1g41a_ 25 AVAIALRNRWRRMQ 38 (443)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 344 9999998554
No 6
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.82 E-value=70 Score=20.67 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=8.6
Q ss_pred CCCCHHHHHHHHHHhhc
Q 023306 142 KLLPPEKFETLMFKLEV 158 (284)
Q Consensus 142 ~~lsed~FE~imd~fEk 158 (284)
..+|+.+|+.||..+.+
T Consensus 51 ~~l~~~e~~~l~~~~d~ 67 (83)
T d1wlza1 51 QILTDEQFDRLWNEMPV 67 (83)
T ss_dssp CCCCHHHHHHHHTTSCB
T ss_pred CCCChhHHHHHhhcccc
Confidence 34555555555544443
No 7
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=15.73 E-value=37 Score=22.10 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=25.2
Q ss_pred HHHHHHhcC------CCCCCHHHHHHHHHHhhcccHHHh
Q 023306 132 DWLDEFNRD------QKLLPPEKFETLMFKLEVLDHKAR 164 (284)
Q Consensus 132 ~WL~~~N~~------r~~lsed~FE~imd~fEk~~~~~q 164 (284)
++|+.+|+- ...+|-+++|.|..+|.....+..
T Consensus 2 e~LK~L~NIRsLRA~aRE~slE~LEe~lEKl~~Vv~Err 40 (57)
T d1lr1a_ 2 EALKILNNIRTLRAQARESTLETLEEMLEKLEVVVNERR 40 (57)
T ss_dssp HHHHHTTHHHHHHHHTTTSCTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 467777763 258999999999999988765553
No 8
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=12.63 E-value=45 Score=24.49 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=16.0
Q ss_pred chhHH-HHHHHHHHhhhhcCCCCcccccc
Q 023306 199 YAVFQ-SVYHYWKEKASVNDGRNLYCGVC 226 (284)
Q Consensus 199 ~~~~~-~VY~YWk~KR~~~gg~pL~~yvC 226 (284)
..++. .||+||| |-++|+-|.+
T Consensus 7 l~vF~hhiYE~~K------GvR~L~L~T~ 29 (111)
T d2guka1 7 LRVFMHHIYEFEK------GVRSMVLATL 29 (111)
T ss_dssp HHHHHHHHHHHHH------TSCSEEEEEE
T ss_pred HHHHHHHHHHHhh------hHHHHHHHhc
Confidence 44555 9999999 7788865444
No 9
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=12.14 E-value=92 Score=26.54 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=19.0
Q ss_pred cCCHHHHHHHHhhhcccCc---hhHH-HHHHHHHHhh
Q 023306 181 LLQLGVAIEALKDQTTVGY---AVFQ-SVYHYWKEKA 213 (284)
Q Consensus 181 ils~~ea~~~l~~~~~~~~---~~~~-~VY~YWk~KR 213 (284)
++|..|..+.|.+..-+-. ..++ |||+||+..|
T Consensus 5 ~~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~ 41 (364)
T d1um8a_ 5 IPAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLS 41 (364)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCeecChHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655422221 1344 9999998654
No 10
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}
Probab=12.11 E-value=30 Score=28.79 Aligned_cols=39 Identities=13% Similarity=-0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhcCCCCcc-----cccccccccCCCCeeeeccccC
Q 023306 204 SVYHYWKEKASVNDGRNLY-----CGVCSLRHQLMIPTHIMSSDRG 244 (284)
Q Consensus 204 ~VY~YWk~KR~~~gg~pL~-----~yvCfrRr~~~~pv~~~r~k~~ 244 (284)
.-|.-|..||.+ |.||- ..++-+++.+.+.||.||+-++
T Consensus 53 ~~~~~~i~rR~~--~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE 96 (271)
T d1nv8a_ 53 KRILELVEKRAS--GYPLHYILGEKEFMGLSFLVEEGVFVPRPETE 96 (271)
T ss_dssp HHHHHHHHHHHT--TCCHHHHHTEEEETTEEEECCTTSCCCCTTHH
T ss_pred HHHHHHHHHhhC--CCChhhhcCcEEEeeeEEEEecCccCchhhhh
Confidence 446668889986 56883 2555567789999999998875
Done!