BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023307
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZAK|A Chain A, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
pdb|1ZAK|B Chain B, Adenylate Kinase From Maize In Complex With The Inhibitor
P1,P5-Bis(Adenosine-5'-)pentaphosphate (Ap5a)
Length = 222
Score = 317 bits (813), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 150/201 (74%), Positives = 174/201 (86%)
Query: 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK 139
A +PLK+MISGAPASGKGTQCELIK KY L HI+AGDLLRAEIAAGSENGKRAKE MEK
Sbjct: 1 ALADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEK 60
Query: 140 GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPED 199
GQLVPDEIVV MVKERL QPD+QENGWLLDGYPRS SQA AL+ +PD FILL+VP++
Sbjct: 61 GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDE 120
Query: 200 TLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAV 259
LVERVVGRRLDPVTGKIYH+KYSPPE +EIA+RLT+RFDDTEEKVKLRL+T++ N+E++
Sbjct: 121 LLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLETYYQNIESL 180
Query: 260 LSLYEDVTVEVCDMISLSFCF 280
LS YE++ V+V ++ F
Sbjct: 181 LSTYENIIVKVQGDATVDAVF 201
>pdb|3HPR|A Chain A, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
pdb|3HPR|B Chain B, Crystal Structure Of V148g Adenylate Kinase From E. Coli,
In Complex With Ap5a
Length = 214
Score = 174 bits (440), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
++I++ GAP +GKGTQ + I EKYG+ I+ GD+LRA + +GSE GK+AK+ M+ G+LV
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G D + +VP++ +V+R
Sbjct: 61 DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119
Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
+VGRR+ +G++YHVK++PP+ D LT R DD EE V+ RL +H ++
Sbjct: 120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDGTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179
Query: 261 SLY 263
Y
Sbjct: 180 GYY 182
>pdb|1AKE|A Chain A, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1AKE|B Chain B, Structure Of The Complex Between Adenylate Kinase From
Escherichia Coli And The Inhibitor Ap5a Refined At 1.9
Angstroms Resolution: A Model For A Catalytic Transition
State
pdb|1ANK|A Chain A, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|1ANK|B Chain B, The Closed Conformation Of A Highly Flexible Protein: The
Structure Of E. Cloi Adenylate Kinase With Bound Amp And
Amppnp
pdb|4AKE|A Chain A, Adenylate Kinase
pdb|4AKE|B Chain B, Adenylate Kinase
pdb|2ECK|A Chain A, Structure Of Phosphotransferase
pdb|2ECK|B Chain B, Structure Of Phosphotransferase
pdb|3HPQ|A Chain A, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
pdb|3HPQ|B Chain B, Crystal Structure Of Wild-Type Adenylate Kinase From E.
Coli, In Complex With Ap5a
Length = 214
Score = 173 bits (439), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
++I++ GAP +GKGTQ + I EKYG+ I+ GD+LRA + +GSE GK+AK+ M+ G+LV
Sbjct: 1 MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G D + +VP++ +V+R
Sbjct: 61 DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119
Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
+VGRR+ +G++YHVK++PP+ D LT R DD EE V+ RL +H ++
Sbjct: 120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179
Query: 261 SLY 263
Y
Sbjct: 180 GYY 182
>pdb|1E4V|A Chain A, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4V|B Chain B, Mutant G10v Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 127/183 (69%), Gaps = 5/183 (2%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
++I++ GAP +GKGTQ + I EKYG+ I+ GD+LRA + +GSE GK+AK+ M+ G+LV
Sbjct: 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G D + +VP++ +V+R
Sbjct: 61 DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119
Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
+VGRR+ +G++YHVK++PP+ D LT R DD EE V+ RL +H ++
Sbjct: 120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179
Query: 261 SLY 263
Y
Sbjct: 180 GYY 182
>pdb|1E4Y|A Chain A, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
pdb|1E4Y|B Chain B, Mutant P9l Of Adenylate Kinase From E. Coli, Modified In
The Gly-Loop
Length = 214
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 126/183 (68%), Gaps = 5/183 (2%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
++I++ GA +GKGTQ + I EKYG+ I+ GD+LRA + +GSE GK+AK+ M+ G+LV
Sbjct: 1 MRIILLGALVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVT 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
DE+V+ +VKER++Q D + NG+LLDG+PR++ QA A+K+ G D + +VP++ +V+R
Sbjct: 61 DELVIALVKERIAQEDCR-NGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119
Query: 205 VVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
+VGRR+ +G++YHVK++PP+ D LT R DD EE V+ RL +H ++
Sbjct: 120 IVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLI 179
Query: 261 SLY 263
Y
Sbjct: 180 GYY 182
>pdb|3GMT|A Chain A, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
pdb|3GMT|B Chain B, Crystal Structure Of Adenylate Kinase From Burkholderia
Pseu
Length = 230
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 119/184 (64%), Gaps = 5/184 (2%)
Query: 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
++++ GAP +GKGTQ IKEK+G+ I+ GD LRA + AG+ G AK + ++G+LVPD
Sbjct: 10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDXLRAAVKAGTPLGVEAKTYXDEGKLVPD 69
Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205
+++ +VKERL + D NG+L DG+PR+++QA A K+ G D + ++VP ++ER
Sbjct: 70 SLIIGLVKERLKEADCA-NGYLFDGFPRTIAQADAXKEAGVAIDYVLEIDVPFSEIIERX 128
Query: 206 VGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVLS 261
GRR P +G+ YHVK++PP+ D++ L +R DD EE VK RL + + +++
Sbjct: 129 SGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLIT 188
Query: 262 LYED 265
Y D
Sbjct: 189 YYGD 192
>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
Kinase Cgd5_3360
Length = 217
Score = 147 bits (370), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 113/190 (59%), Gaps = 9/190 (4%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
+++ GAP SGKGTQCE IK++YGL H++ GD+LR I G++ G AK +E G V DE
Sbjct: 8 LILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDE 67
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLV 202
IV+ +VKE+ NG++LDG+PR++ QA L K G I E+ + ++
Sbjct: 68 IVLGLVKEKFDLGVCV-NGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEII 126
Query: 203 ERVVGRRLDPVTGKIYHVKYSPPE---TDEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEA 258
ER+ GR P +G+IYHVKY+PP+ D++ L R DD E VK+RL H
Sbjct: 127 ERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAP 186
Query: 259 VLSLYEDVTV 268
++ YED+ +
Sbjct: 187 LVKFYEDLGI 196
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 143 bits (361), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/188 (39%), Positives = 117/188 (62%), Gaps = 9/188 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ +++ G P +GKGTQ E I YG+ HI+ GD+ RA + G+ G +AK++M++G LVP
Sbjct: 1 MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDT 200
DE+ + +V+ERLS+ D Q NG+LLDG+PR+++QA AL+ G + D I ++V +D
Sbjct: 61 DEVTIGIVRERLSKDDCQ-NGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPE----TDEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ER+ GRR+ G YH+ + PP D+ L +R DD E V RL+ + +
Sbjct: 120 LMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQM 179
Query: 257 EAVLSLYE 264
+ ++ YE
Sbjct: 180 KPLVDFYE 187
>pdb|2OO7|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
pdb|2OO7|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (T179iQ199R)
Length = 217
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 117/187 (62%), Gaps = 9/187 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ +++ G P +GKGTQ E I E YG+ HI+ GD+ RA + + G AK +++KG+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
DE+ + +VKERL + D E G+LLDG+PR+++Q L++YG D I +EV +D
Sbjct: 61 DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ER+ GRR+ V G YH+ ++PP+T D+ L +R DD EE V RL+ + +
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQI 179
Query: 257 EAVLSLY 263
+ +L Y
Sbjct: 180 QPLLDFY 186
>pdb|1S3G|A Chain A, Crystal Structure Of Adenylate Kinase From Bacillus
Globisporus
Length = 217
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 118/188 (62%), Gaps = 9/188 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ I++ G P +GKGTQ + I EKYG HI+ GD+ RA I G+E G +AK M++G LVP
Sbjct: 1 MNIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDT 200
DE+ + +V+ERLS+ D +NG+LLDG+PR++ QA AL + G + + + ++V ++
Sbjct: 61 DEVTIGIVRERLSKSDC-DNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEE 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ R+ GRR+ V G YH+ ++PP+ D+ L +R DD + V RL+ + +
Sbjct: 120 LIARLTGRRICKVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNPDTVTNRLEVNMNQT 179
Query: 257 EAVLSLYE 264
+L+ Y+
Sbjct: 180 APLLAFYD 187
>pdb|1P3J|A Chain A, Adenylate Kinase From Bacillus Subtilis
Length = 217
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 116/187 (62%), Gaps = 9/187 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ +++ G P +GKGTQ E I E YG+ HI+ GD+ RA + + G AK +++KG+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
DE+ + +VKERL + D E G+LLDG+PR+++Q L++YG D I +EV +D
Sbjct: 61 DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ER+ GRR+ V G YH+ ++PP+T D+ L +R DD EE V RL+ +
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLY 263
+ +L Y
Sbjct: 180 QPLLDFY 186
>pdb|2P3S|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (G214rQ199R)
Length = 217
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 116/187 (62%), Gaps = 9/187 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ +++ G P +GKGTQ E I E YG+ HI+ GD+ RA + + G AK +++KG+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
DE+ + +VKERL + D E G+LLDG+PR+++Q L++YG D I +EV +D
Sbjct: 61 DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ER+ GRR+ V G YH+ ++PP+T D+ L +R DD EE V RL+ +
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLY 263
+ +L Y
Sbjct: 180 QPLLDFY 186
>pdb|2EU8|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
pdb|2EU8|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199r)
Length = 216
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 116/187 (62%), Gaps = 9/187 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ +++ G P +GKGTQ E I E YG+ HI+ GD+ RA + + G AK +++KG+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
DE+ + +VKERL + D E G+LLDG+PR+++Q L++YG D I +EV +D
Sbjct: 61 DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ER+ GRR+ V G YH+ ++PP+T D+ L +R DD EE V RL+ +
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLY 263
+ +L Y
Sbjct: 180 QPLLDFY 186
>pdb|2QAJ|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
pdb|2QAJ|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (Q199rG213E)
Length = 217
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 116/187 (62%), Gaps = 9/187 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ +++ G P +GKGTQ E I E YG+ HI+ GD+ RA + + G AK +++KG+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
DE+ + +VKERL + D E G+LLDG+PR+++Q L++YG D I +EV +D
Sbjct: 61 DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ER+ GRR+ V G YH+ ++PP+T D+ L +R DD EE V RL+ +
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLY 263
+ +L Y
Sbjct: 180 QPLLDFY 186
>pdb|2ORI|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
pdb|2ORI|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (A193vQ199R)
Length = 216
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 116/187 (62%), Gaps = 9/187 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ +++ G P +GKGTQ E I E YG+ HI+ GD+ RA + + G AK +++KG+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
DE+ + +VKERL + D E G+LLDG+PR+++Q L++YG D I +EV +D
Sbjct: 61 DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ER+ GRR+ V G YH+ ++PP+T D+ L +R DD EE V RL+ +
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLY 263
+ +L Y
Sbjct: 180 QPLLDFY 186
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 140 bits (354), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 116/182 (63%), Gaps = 11/182 (6%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
++ G P +GKGTQ + + ++ G VHI+ GD+LR + G+ GK+AKE+ME+G+LVPD+
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDD 62
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTLV 202
+++ +++E + + DG+PR++ QA A L+K G + D +L EVP++ ++
Sbjct: 63 LIIALIEEVF----PKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVI 118
Query: 203 ERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL 262
ER+ GRR++P TG++YHVKY+PP ++ +R DD E +K RL+ + ++
Sbjct: 119 ERLSGRRINPETGEVYHVKYNPPPP---GVKVIQREDDKPEVIKKRLEVYREQTAPLIEY 175
Query: 263 YE 264
Y+
Sbjct: 176 YK 177
>pdb|3DKV|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse1
Length = 217
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 118/188 (62%), Gaps = 9/188 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ I++ G P +GKGTQ E I EKYG+ HI+ GD+ RA + + G AK +++KG+LVP
Sbjct: 1 MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
DE+ + +V+ERLS+ D E G+LLDG+PR+++Q L++ G D I ++V ++
Sbjct: 61 DEVTIGIVRERLSKSDC-ERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEE 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ER+ GRR+ V G YH+ ++PP+T D+ L +R DD EE V RL+ +
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQT 179
Query: 257 EAVLSLYE 264
+L+ Y+
Sbjct: 180 APLLAFYD 187
>pdb|3DL0|A Chain A, Crystal Structure Of Adenylate Kinase Variant Aklse3
pdb|3DL0|B Chain B, Crystal Structure Of Adenylate Kinase Variant Aklse3
Length = 216
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 117/189 (61%), Gaps = 9/189 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ +++ G P +GKGTQ E I EKYG+ HI+ GD+ RA + + G AK +++KG+LVP
Sbjct: 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
DE+ + +VKERL + D E G+LLDG+PR+++Q L++ G D I ++V +D
Sbjct: 61 DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ER+ GRR+ V G YH+ ++PP+T D+ L +R DD EE V RL+ +
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQT 179
Query: 257 EAVLSLYED 265
+L Y++
Sbjct: 180 APLLDFYDE 188
>pdb|2OSB|A Chain A, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
pdb|2OSB|B Chain B, Crystal Structure Of A Thermostable Mutant Of Bacillus
Subtilis Adenylate Kinase (q16l/q199r/)
Length = 216
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 115/187 (61%), Gaps = 9/187 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ +++ G P +GKGT E I E YG+ HI+ GD+ RA + + G AK +++KG+LVP
Sbjct: 1 MNLVLMGLPGAGKGTLGERIVEDYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDT 200
DE+ + +VKERL + D E G+LLDG+PR+++Q L++YG D I +EV +D
Sbjct: 61 DEVTIGIVKERLGKDDC-ERGFLLDGFPRTVAQAEALEEILEEYGKPIDYVINIEVDKDV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHHNV 256
L+ER+ GRR+ V G YH+ ++PP+T D+ L +R DD EE V RL+ +
Sbjct: 120 LMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVSKRLEVNMKQT 179
Query: 257 EAVLSLY 263
+ +L Y
Sbjct: 180 QPLLDFY 186
>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
Marinus
Length = 216
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 112/187 (59%), Gaps = 9/187 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ I++ G P +GKGTQ E I EKY + HI+ GD+ RA I G+E G +AK M++G LVP
Sbjct: 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDT 200
DE+ + +V ERLS+ D Q+ G+LLDG+PR+++QA AL G + D + ++V ++
Sbjct: 61 DEVTIGIVHERLSKDDCQK-GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEE 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEI----AARLTKRFDDTEEKVKLRLKTHHHNV 256
L++R+ GR + G YH ++PP + I L +R DD E VK RL +
Sbjct: 120 LMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQT 179
Query: 257 EAVLSLY 263
+ +L Y
Sbjct: 180 QPLLDFY 186
>pdb|1AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
pdb|2AKY|A Chain A, High-Resolution Structures Of Adenylate Kinase From Yeast
Ligated With Inhibitor Ap5a, Showing The Pathway Of
Phosphoryl Transfer
Length = 220
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 119/194 (61%), Gaps = 8/194 (4%)
Query: 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
E +++++ G P +GKGTQ ++E++ H+A GD+LR++IA G++ G AK+ M++G L
Sbjct: 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGL 62
Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPE 198
V D+I+V M+K+ L+ + +NG++LDG+PR++ QA LK+ G + I L+V +
Sbjct: 63 VSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDE----IAARLTKRFDDTEEKVKLRLKTHHH 254
+ LV R+ GR + P +G+ YH ++PP+ D L +R DD + +K RL +H
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHA 182
Query: 255 NVEAVLSLYEDVTV 268
E ++ Y+ +
Sbjct: 183 QTEPIVDFYKKTGI 196
>pdb|3AKY|A Chain A, Stability, Activity And Structure Of Adenylate Kinase
Mutants
Length = 220
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 119/194 (61%), Gaps = 8/194 (4%)
Query: 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
E +++++ G P +GKGTQ ++E++ H+A GD+LR++IA G++ G AK+ M++G L
Sbjct: 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGL 62
Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPE 198
V D+I+V M+K+ L+ + +NG++LDG+PR++ QA LK+ G + I L+V +
Sbjct: 63 VSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDE----IAARLTKRFDDTEEKVKLRLKTHHH 254
+ LV R+ GR + P +G+ YH ++PP+ D L +R DD + +K RL +H
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHA 182
Query: 255 NVEAVLSLYEDVTV 268
E ++ Y+ +
Sbjct: 183 QTEPIVDFYKKTGI 196
>pdb|2C9Y|A Chain A, Structure Of Human Adenylate Kinase 2
Length = 242
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 116/187 (62%), Gaps = 9/187 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
++ ++ G P +GKGTQ + E + + H+A GD+LRA +A+GSE GK+ K M+ G+LV
Sbjct: 17 IRAVLLGPPGAGKGTQAPRLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 76
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDT 200
DE+VV ++++ L P + NG+LLDG+PR++ QA L +K + D I +P+
Sbjct: 77 DEMVVELIEKNLETPLCK-NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 135
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPE---TDEIAAR-LTKRFDDTEEKVKLRLKTHHHNV 256
L+ R+ GR + P +G+ YH +++PP+ D+I L +R DD E+ +K+RL+ +H
Sbjct: 136 LIRRITGRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKIRLQAYHTQT 195
Query: 257 EAVLSLY 263
++ Y
Sbjct: 196 TPLIEYY 202
>pdb|2AR7|A Chain A, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2AR7|B Chain B, Crystal Structure Of Human Adenylate Kinase 4, Ak4
pdb|2BBW|A Chain A, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
pdb|2BBW|B Chain B, Crystal Structure Of Human Adenylate Kinase 4 (Ak4) In
Complex With Diguanosine Pentaphosphate
Length = 246
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 117/201 (58%), Gaps = 10/201 (4%)
Query: 68 STNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGS 127
T + FQ +AS L+ +I G P SGKGT C+ I + +GL H+++G LR I A +
Sbjct: 14 GTENLYFQSMASKL---LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST 70
Query: 128 ENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQ 187
E G+ AK+++EK LVPD ++ ++ L Q WLLDG+PR+L QA AL K +
Sbjct: 71 EVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH--WLLDGFPRTLGQAEALDKI-CE 127
Query: 188 PDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEE 243
DL I L +P +TL +R+ R + P +G++Y++ ++PP D++ L ++ DD E
Sbjct: 128 VDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPE 187
Query: 244 KVKLRLKTHHHNVEAVLSLYE 264
V RL+ + + V+ LY+
Sbjct: 188 AVAARLRQYKDVAKPVIELYK 208
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 23/178 (12%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
I + G P SGKGTQCE I +KYG H++ GDLLR+E+++GS GK+ E MEKGQLVP E
Sbjct: 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLE 71
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
V+ M+++ + + G+L+DGYPR + Q ++ QP L + ++ +T+ +R++
Sbjct: 72 TVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLL 131
Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264
R + R DD EE +K RL+T++ E V++ YE
Sbjct: 132 KR-----------------------GETSGRVDDNEETIKKRLETYYKATEPVIAFYE 166
>pdb|1AK2|A Chain A, Adenylate Kinase Isoenzyme-2
pdb|2AK2|A Chain A, Adenylate Kinase Isoenzyme-2
Length = 233
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 116/187 (62%), Gaps = 9/187 (4%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
++ ++ G P +GKGTQ + + + + H+A GD+LRA +A+GSE GK+ K M+ G+LV
Sbjct: 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVS 76
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDT 200
DE+V+ ++++ L P + NG+LLDG+PR++ QA L +K + D I +P+
Sbjct: 77 DEMVLELIEKNLETPPCK-NGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 135
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPE---TDEIAAR-LTKRFDDTEEKVKLRLKTHHHNV 256
L+ R+ GR + P +G+ YH +++PP+ D+I L +R DD ++ +K+RL+ +H
Sbjct: 136 LIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQT 195
Query: 257 EAVLSLY 263
++ Y
Sbjct: 196 TPLVEYY 202
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 98/178 (55%), Gaps = 23/178 (12%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
I + G P SGKGTQCE I +KYG H++ GDLLRAE+++GS GK E MEKGQLVP E
Sbjct: 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLE 71
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
V+ M+++ + G+L+DGYPR + Q ++ QP L + ++ +T+ +R++
Sbjct: 72 TVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAGPETMTKRLL 131
Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264
R + R DD EE +K RL+T++ E V++ YE
Sbjct: 132 KR-----------------------GETSGRVDDNEETIKKRLETYYKATEPVIAFYE 166
>pdb|1DVR|A Chain A, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
pdb|1DVR|B Chain B, Structure Of A Mutant Adenylate Kinase Ligated With An
Atp- Analogue Showing Domain Closure Over Atp
Length = 220
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 117/194 (60%), Gaps = 8/194 (4%)
Query: 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
E +++++ G P +GKGTQ ++E++ H+A GD+LR++IA G++ G AK+ M++G L
Sbjct: 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGL 62
Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPE 198
V D+I+V M+K+ L+ + +NG++L G+PR++ QA LK+ G + I L+V +
Sbjct: 63 VSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD 122
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDE----IAARLTKRFDDTEEKVKLRLKTHHH 254
+ LV R+ GR + P +G+ YH ++PP+ D L + DD + +K RL +H
Sbjct: 123 ELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHA 182
Query: 255 NVEAVLSLYEDVTV 268
E ++ Y+ +
Sbjct: 183 QTEPIVDFYKKTGI 196
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 110/189 (58%), Gaps = 7/189 (3%)
Query: 79 SATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME 138
A+ L+ I GAP SGKGT I + + L H+++GDLLR + G+E G AK ++
Sbjct: 1 GASARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFID 60
Query: 139 KGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPE 198
+G+L+PD+++ +V L + + WLLDG+PR+L QA AL + +Q D I L VP
Sbjct: 61 QGKLIPDDVMTRLVLHELK--NLTQYNWLLDGFPRTLPQAEALDR-AYQIDTVINLNVPF 117
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHH 254
+ + +R+ R + P +G++Y+++++PP+T D L +R DD E V RLK +
Sbjct: 118 EVIKQRLTARWIHPGSGRVYNIEFNPPKTMGIDDLTGEPLVQREDDRPETVVKRLKAYEA 177
Query: 255 NVEAVLSLY 263
E VL Y
Sbjct: 178 QTEPVLEYY 186
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 110/190 (57%), Gaps = 7/190 (3%)
Query: 79 SATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME 138
A+ L+ +I GAP SGKGT I + L H+++GDLLR + G+E G AK ++
Sbjct: 2 GASARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFID 61
Query: 139 KGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPE 198
+G+L+PD+++ + L + + WLLDG+PR+L QA AL + +Q D I L VP
Sbjct: 62 QGKLIPDDVMTRLALHELK--NLTQYSWLLDGFPRTLPQAEALDR-AYQIDTVINLNVPF 118
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPET----DEIAARLTKRFDDTEEKVKLRLKTHHH 254
+ + +R+ R + P +G++Y+++++PP+T D L +R DD E V RLK +
Sbjct: 119 EVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYED 178
Query: 255 NVEAVLSLYE 264
+ VL Y+
Sbjct: 179 QTKPVLEYYQ 188
>pdb|3NDP|A Chain A, Crystal Structure Of Human Ak4(L171p)
pdb|3NDP|B Chain B, Crystal Structure Of Human Ak4(L171p)
Length = 231
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 109/184 (59%), Gaps = 7/184 (3%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
L+ +I G P SGKGT C+ I + +GL H+++G LR I A +E G+ AK+++EK LVP
Sbjct: 6 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVP 65
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
D ++ ++ L Q WLLDG+PR+L QA AL K + DL I L +P +TL +R
Sbjct: 66 DHVITRLMMSELENRRGQH--WLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDR 122
Query: 205 VVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVEAVL 260
+ R + P +G++Y++ ++PP D++ L ++ DD E V R + + + V+
Sbjct: 123 LSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARPRQYKDVAKPVI 182
Query: 261 SLYE 264
LY+
Sbjct: 183 ELYK 186
>pdb|3L0P|A Chain A, Crystal Structures Of Iron Containing Adenylate Kinase
From Desulfovibrio Gigas
pdb|3L0S|A Chain A, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
pdb|3L0S|C Chain C, Crystal Structures Of Zinc, Cobalt And Iron Containing
Adenylate Kinase From Gram-Negative Bacteria
Desulfovibrio Gigas
Length = 223
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 104/188 (55%), Gaps = 13/188 (6%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ I+I G SGKGTQ L+K+KY L HI +G + R I G+E GK+AKE +++G LVP
Sbjct: 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT----ALKKYGFQPDLFILLEVPEDT 200
D+I + MV E L ++GWLLDG+PR+ QA AL++ G + + I + +P +
Sbjct: 61 DDITIPMVLETLES--KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREV 118
Query: 201 LVERVVGRRL---DPVTGKIYHVKYSPPETD---EIAARLTKRFDDTEE-KVKLRLKTHH 253
R++GRR+ +P ++ P D L+ R DD +E + R ++
Sbjct: 119 AKNRIMGRRICKNNPNHPNNIFIEAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYY 178
Query: 254 HNVEAVLS 261
+ V+ L+
Sbjct: 179 NTVDGTLA 186
>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
Plasmodium Falciparum
Length = 243
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 108/188 (57%), Gaps = 9/188 (4%)
Query: 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD 145
+ + GAP SGKGTQ +K+ + H++ GDLLR +E G + K + +G+LV D
Sbjct: 31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDD 90
Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDTL 201
++V+++V E+L P ++ G++LDGYPR++ QA L+K + D VP++ L
Sbjct: 91 QMVLSLVDEKLKTPQCKK-GFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVL 149
Query: 202 VERVVGRRLDPVTGKIYHVKYSPPET---DEIAAR-LTKRFDDTEEKVKLRLKTHHHNVE 257
V R+ GR + +G+IYH ++PP+ D++ L +R DD E+ +K RL
Sbjct: 150 VNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETS 209
Query: 258 AVLSLYED 265
++S Y++
Sbjct: 210 PLISYYKN 217
>pdb|2XB4|A Chain A, Crystal Structures Of Zinc Containing Adenylate Kinase
From Desulfovibrio Gigas
Length = 223
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 103/188 (54%), Gaps = 13/188 (6%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+ I+I G SGKGTQ L+K+KY L HI +G + R I G+E GK+AKE +++G LVP
Sbjct: 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT----ALKKYGFQPDLFILLEVPEDT 200
D+I + MV E L ++GWLLDG+PR+ QA AL++ G + + I + +P +
Sbjct: 61 DDITIPMVLETLES--KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREV 118
Query: 201 LVERVVGRRL---DPVTGKIYHVKYSPPETD---EIAARLTKRFDDTEE-KVKLRLKTHH 253
R++GRR+ +P + P D L+ R DD +E + R ++
Sbjct: 119 AKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGALSARADDQDEGAINKRHDIYY 178
Query: 254 HNVEAVLS 261
+ V+ L+
Sbjct: 179 NTVDGTLA 186
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
I I G P SGKGTQCE + EKYG H++ G+LLR E+A+ SE K ++ ME+G LVP
Sbjct: 15 IFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSG 74
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
IV+ ++KE + G+L+DGYPR + Q + P L I ++ DT+ R++
Sbjct: 75 IVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLL 134
Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDV 266
+R + DDT + + RL+ ++ V++ YE
Sbjct: 135 Q-----------------------MSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETK 171
Query: 267 T 267
T
Sbjct: 172 T 172
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 98/190 (51%), Gaps = 27/190 (14%)
Query: 75 QVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAK 134
Q LA A V I + G P SGKGTQCE + +K+ H+++GDLLRAE+ +GS GK K
Sbjct: 24 QKLAKAKV----IFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELK 79
Query: 135 EHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILL 194
ME+G+LVP E+V+ ++KE + + + +L+DGYPR L Q +K I
Sbjct: 80 AMMERGELVPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINF 139
Query: 195 EVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHH 254
+V E+ + +R++ R A + R DD EE + R +T +
Sbjct: 140 DVSEEVMRKRLLKR-----------------------AETSNRVDDNEETIVKRFRTFNE 176
Query: 255 NVEAVLSLYE 264
+ V+ Y+
Sbjct: 177 LTKPVIEHYK 186
>pdb|1UKY|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
pdb|1UKZ|A Chain A, Substrate Specificity And Assembly Of Catalytic Center
Derived From Two Structures Of Ligated Uridylate Kinase
Length = 203
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 25/180 (13%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPD 145
I + G P +GKGTQCE + + Y VH++AGDLLRAE AGS+ G+ K +++GQ+VP
Sbjct: 18 IFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQ 77
Query: 146 EIVVTMVKERLSQP-DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204
EI + +++ +S + ++ +L+DG+PR + QA + ++ + + + PED ++ER
Sbjct: 78 EITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLER 137
Query: 205 VVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264
++ R + + R DD E +K R T V+ +E
Sbjct: 138 LLER-----------------------GKTSGRSDDNIESIKKRFNTFKETSMPVIEYFE 174
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 34/205 (16%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+++++ G P +GKGTQ + EK G+ I+ G+L R I G++ G AK +++ G LVP
Sbjct: 1 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 60
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDT 200
++ +V +RL+ PD+ NG++LDGYPRS+ QA A L++ G D + V E+
Sbjct: 61 SDLTNELVDDRLNNPDAA-NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEV 119
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
L+ER+ GR R DDT++ + R+K + +L
Sbjct: 120 LLERLKGR---------------------------GRADDTDDVILNRMKVYRDETAPLL 152
Query: 261 SLYEDV--TVEVCDMISLSFCFHLH 283
Y D TV+ + F L
Sbjct: 153 EYYRDQLKTVDAVGTMDEVFARALR 177
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 34/205 (16%)
Query: 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP 144
+++++ G P +GKGTQ + EK G+ I+ G+L R I G++ G AK +++ G LVP
Sbjct: 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVP 80
Query: 145 DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDT 200
++ +V +RL+ PD+ NG++LDGYPRS+ QA A L++ G D + V E+
Sbjct: 81 SDLTNELVDDRLNNPDAA-NGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEV 139
Query: 201 LVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260
L+ER+ GR R DDT++ + R+K + +L
Sbjct: 140 LLERLKGR---------------------------GRADDTDDVILNRMKVYRDETAPLL 172
Query: 261 SLYEDV--TVEVCDMISLSFCFHLH 283
Y D TV+ + F L
Sbjct: 173 EYYRDQLKTVDAVGTMDEVFARALR 197
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 102/192 (53%), Gaps = 30/192 (15%)
Query: 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKG 140
++PL + + G P +GKGTQC I EKYG H++AG+LLR E S+ G+ ++++++G
Sbjct: 1 MKPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEG 60
Query: 141 QLVPDEIVVTMVKERLSQ---PDSQENGWLLDGYPRSLSQATALKKY--GFQPDLFIL-L 194
++VP EI ++++K + Q ++Q+N +L+DG+PR+ K G F+L
Sbjct: 61 KIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFF 120
Query: 195 EVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHH 254
+ + +ER + R + + R DD E ++ R++T+
Sbjct: 121 DCNNEICIERCLER-----------------------GKSSGRSDDNRESLEKRIQTYLQ 157
Query: 255 NVEAVLSLYEDV 266
+ + ++ LYE++
Sbjct: 158 STKPIIDLYEEM 169
>pdb|1QF9|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog In UmpCMP
Kinase
pdb|5UKD|A Chain A, Ph Influences Fluoride Coordination Number Of The Alfx
Phosphoryl Transfer Transition State Analog
pdb|1UKE|A Chain A, UmpCMP KINASE FROM SLIME MOLD
pdb|2UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP
pdb|3UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, CMP, AND
Alf3
pdb|4UKD|A Chain A, UmpCMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP,
Beryllium Fluoride
Length = 194
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 21/177 (11%)
Query: 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL 142
+P + + G P SGKGTQC I +G VH++AGDLLR E +GS++G+ ++ G++
Sbjct: 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEI 64
Query: 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPR----SLSQATALKKYGFQPDLFILLEVPE 198
VP + V ++K + +Q +L+DG+PR + S +K + + + PE
Sbjct: 65 VPSIVTVKLLKNAIDA--NQGKNFLVDGFPRNEENNNSWEENMKDF-VDTKFVLFFDCPE 121
Query: 199 DTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHN 255
+ + +R++ R S +D+ + KRF+ V+ +L H+N
Sbjct: 122 EVMTQRLLKR------------GESSGRSDDNIESIKKRFNTFN--VQTKLVIDHYN 164
>pdb|3CM0|A Chain A, Crystal Structure Of Adenylate Kinase From Thermus
Thermophilus Hb8
Length = 186
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 29/180 (16%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE 146
++ G P +GKGTQ + ++ G ++ GD+LR +A G+ G+R + ME+G LVPD+
Sbjct: 7 VIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDD 66
Query: 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206
+++ +++E L++ + DG+PR+L+QA AL + +L E
Sbjct: 67 LILELIREELAER------VIFDGFPRTLAQAEALDR--------LLSE----------T 102
Query: 207 GRRLDPVTGKIYHVKYSPPETDEIAAR--LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264
G RL G + I R L R DD EE V+ RL+ + E ++ YE
Sbjct: 103 GTRL---LGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGYYE 159
>pdb|3H0K|A Chain A, Crystal Structure Of An Adenylated Kinase Related Protein
From Sulfolobus Solfataricus To 3.25a
pdb|3H0K|B Chain B, Crystal Structure Of An Adenylated Kinase Related Protein
From Sulfolobus Solfataricus To 3.25a
Length = 178
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPD 145
I+I+G P SGK +L+KE+ G I D++R + ++ G+R + ++ ++ D
Sbjct: 3 ILITGMPGSGKSEFAKLLKER-GAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGD 61
Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK 183
+V + E L S + + DG RSL++ K+
Sbjct: 62 GVVARLCVEELGT--SNHDLVVFDGV-RSLAEVEEFKR 96
>pdb|3LW7|A Chain A, The Crystal Structure Of An Adenylate Kinase-Related
Protein Bound To Amp From Sulfolobus Solfataricus To
2.3a
pdb|3LW7|B Chain B, The Crystal Structure Of An Adenylate Kinase-Related
Protein Bound To Amp From Sulfolobus Solfataricus To
2.3a
Length = 179
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPD 145
I+I+G P SGK +L+KE+ G I D++R + ++ G+R + ++ ++ D
Sbjct: 4 ILITGMPGSGKSEFAKLLKER-GAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGD 62
Query: 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK 183
+V + E L S + + DG RSL++ K+
Sbjct: 63 GVVARLCVEELGT--SNHDLVVFDGV-RSLAEVEEFKR 97
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 71 SANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGL--VHIAAGDL 118
+ NF L + V PL + I G GK QCEL+ K G+ + ++AG+L
Sbjct: 24 TKNFLKLPNIKV-PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122
I+++G P GK T + + K GL +I GDL R E
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122
I+++G P GK T + + K GL +I GDL R E
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 42
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 77 LASATVEPLKIMISGAPASGKGTQCELIKEKYG 109
L ++ P I +SG ASGK T CE I E G
Sbjct: 18 LYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI 123
I ++G +GK T CE++K KYG H+ D + E+
Sbjct: 15 IGVTGKIGTGKSTVCEILKNKYG-AHVVNVDRIGHEV 50
>pdb|1Y63|A Chain A, Initial Crystal Structural Analysis Of A Probable Kinase
From Leishmania Major Friedlin
Length = 184
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 85 LKIMISGAPASGKGTQCELI-KEKYGLVHIAAGDLLR 120
+ I+I+G P +GK + E+I E G H+ G L++
Sbjct: 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,158,544
Number of Sequences: 62578
Number of extensions: 326097
Number of successful extensions: 1083
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 956
Number of HSP's gapped (non-prelim): 69
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)