Query 023307
Match_columns 284
No_of_seqs 239 out of 2089
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 100.0 6.5E-37 1.4E-41 265.8 22.4 197 84-281 31-237 (244)
2 PLN02459 probable adenylate ki 100.0 1.5E-34 3.2E-39 252.1 21.8 197 83-280 28-242 (261)
3 TIGR01351 adk adenylate kinase 100.0 2.1E-34 4.5E-39 247.1 20.9 195 87-281 2-203 (210)
4 PRK14526 adenylate kinase; Pro 100.0 5E-34 1.1E-38 244.2 20.4 193 86-280 2-200 (211)
5 PRK00279 adk adenylate kinase; 100.0 2.6E-33 5.6E-38 241.2 21.1 196 85-281 1-206 (215)
6 PRK14529 adenylate kinase; Pro 100.0 3E-33 6.5E-38 240.2 18.3 193 86-280 2-215 (223)
7 PTZ00088 adenylate kinase 1; P 100.0 1.5E-32 3.3E-37 237.5 21.5 198 83-281 5-223 (229)
8 KOG3079 Uridylate kinase/adeny 100.0 1.3E-32 2.8E-37 223.8 18.7 179 80-282 4-186 (195)
9 PRK14530 adenylate kinase; Pro 100.0 1.3E-31 2.8E-36 230.6 20.8 192 84-281 3-205 (215)
10 PLN02842 nucleotide kinase 100.0 7.2E-32 1.6E-36 253.7 19.7 193 88-280 1-193 (505)
11 PRK13808 adenylate kinase; Pro 100.0 3E-30 6.4E-35 232.5 20.6 178 85-280 1-184 (333)
12 cd01428 ADK Adenylate kinase ( 100.0 9.7E-30 2.1E-34 214.8 21.3 189 86-279 1-194 (194)
13 PRK14528 adenylate kinase; Pro 100.0 2.7E-29 5.9E-34 211.4 20.9 172 85-280 2-179 (186)
14 PRK14531 adenylate kinase; Pro 100.0 6.7E-29 1.4E-33 208.5 20.8 167 85-280 3-175 (183)
15 KOG3078 Adenylate kinase [Nucl 100.0 1.4E-29 3E-34 215.7 16.5 191 83-274 14-210 (235)
16 PRK14532 adenylate kinase; Pro 100.0 2.3E-28 4.9E-33 206.0 21.1 171 86-280 2-178 (188)
17 PRK14527 adenylate kinase; Pro 100.0 3.6E-28 7.8E-33 205.4 20.6 175 82-281 4-184 (191)
18 PLN02200 adenylate kinase fami 100.0 1.3E-27 2.9E-32 207.7 21.5 174 81-281 40-216 (234)
19 TIGR01359 UMP_CMP_kin_fam UMP- 100.0 1.3E-27 2.9E-32 200.2 20.6 170 86-280 1-175 (183)
20 PF00406 ADK: Adenylate kinase 100.0 9.3E-28 2E-32 195.4 18.4 145 89-266 1-149 (151)
21 PRK02496 adk adenylate kinase; 100.0 3.5E-27 7.5E-32 198.1 21.6 169 84-280 1-175 (184)
22 COG0563 Adk Adenylate kinase a 99.9 8.2E-27 1.8E-31 194.3 16.9 166 85-280 1-170 (178)
23 TIGR01360 aden_kin_iso1 adenyl 99.9 5.1E-26 1.1E-30 191.0 21.9 175 83-280 2-178 (188)
24 PRK01184 hypothetical protein; 99.7 5.1E-15 1.1E-19 124.1 18.0 119 84-209 1-125 (184)
25 PRK13973 thymidylate kinase; P 99.7 6.8E-15 1.5E-19 126.4 18.4 167 83-280 2-197 (213)
26 PRK13949 shikimate kinase; Pro 99.6 1.5E-14 3.2E-19 119.9 15.4 109 85-208 2-114 (169)
27 PRK06217 hypothetical protein; 99.6 1.7E-14 3.7E-19 121.0 14.0 106 84-210 1-106 (183)
28 PRK03839 putative kinase; Prov 99.6 1.8E-14 3.8E-19 120.5 13.7 100 86-209 2-101 (180)
29 PRK08356 hypothetical protein; 99.6 1.5E-14 3.2E-19 122.6 12.6 117 84-209 5-136 (195)
30 COG0703 AroK Shikimate kinase 99.6 2.7E-14 5.8E-19 117.0 12.8 111 84-208 2-115 (172)
31 PRK13974 thymidylate kinase; P 99.6 2.4E-14 5.2E-19 122.9 12.5 166 83-280 2-197 (212)
32 COG0125 Tmk Thymidylate kinase 99.6 3.7E-14 8E-19 120.7 13.1 167 82-280 1-194 (208)
33 PRK08118 topology modulation p 99.6 3.9E-14 8.5E-19 117.1 11.5 98 85-209 2-100 (167)
34 PRK00625 shikimate kinase; Pro 99.6 2.3E-13 4.9E-18 113.1 15.7 115 85-209 1-117 (173)
35 PHA02530 pseT polynucleotide k 99.5 5E-14 1.1E-18 126.9 12.4 161 84-278 2-171 (300)
36 KOG3347 Predicted nucleotide k 99.5 6.9E-14 1.5E-18 110.7 11.2 109 82-210 5-115 (176)
37 COG1102 Cmk Cytidylate kinase 99.5 4.8E-13 1E-17 107.4 16.1 110 85-209 1-112 (179)
38 PRK00081 coaE dephospho-CoA ki 99.5 1.5E-13 3.1E-18 116.5 12.8 118 84-209 2-146 (194)
39 PRK08233 hypothetical protein; 99.5 1.2E-13 2.5E-18 115.2 10.7 116 83-209 2-119 (182)
40 PRK14730 coaE dephospho-CoA ki 99.5 4.4E-13 9.5E-18 113.6 14.0 118 85-209 2-147 (195)
41 PRK04040 adenylate kinase; Pro 99.5 7E-13 1.5E-17 111.7 15.0 117 84-207 2-130 (188)
42 PRK13948 shikimate kinase; Pro 99.5 5.1E-13 1.1E-17 111.8 13.5 112 82-206 8-121 (182)
43 cd01672 TMPK Thymidine monopho 99.5 9E-13 2E-17 111.0 14.6 162 85-279 1-190 (200)
44 TIGR02173 cyt_kin_arch cytidyl 99.5 3E-12 6.5E-17 105.6 17.3 113 85-209 1-113 (171)
45 PF13671 AAA_33: AAA domain; P 99.5 1.4E-13 2.9E-18 110.3 9.0 114 86-210 1-120 (143)
46 PLN02924 thymidylate kinase 99.5 4E-13 8.6E-18 115.8 12.4 124 81-206 13-154 (220)
47 PRK13947 shikimate kinase; Pro 99.5 7.6E-13 1.6E-17 109.4 13.4 110 85-209 2-115 (171)
48 PRK00698 tmk thymidylate kinas 99.5 4.3E-13 9.4E-18 113.9 12.1 165 83-280 2-193 (205)
49 PRK14734 coaE dephospho-CoA ki 99.5 5.9E-13 1.3E-17 113.3 12.8 116 85-209 2-147 (200)
50 PRK03731 aroL shikimate kinase 99.5 2.7E-12 5.7E-17 106.3 15.6 111 85-209 3-115 (171)
51 TIGR00041 DTMP_kinase thymidyl 99.5 1.6E-12 3.5E-17 109.7 14.5 120 84-209 3-149 (195)
52 COG0237 CoaE Dephospho-CoA kin 99.5 9.3E-13 2E-17 111.7 12.9 118 84-209 2-145 (201)
53 PRK00131 aroK shikimate kinase 99.5 1.6E-12 3.4E-17 107.4 13.7 114 83-209 3-118 (175)
54 PRK13946 shikimate kinase; Pro 99.4 2.8E-12 6.1E-17 107.7 14.6 114 83-209 9-124 (184)
55 PRK05057 aroK shikimate kinase 99.4 3.2E-12 6.8E-17 106.3 14.7 158 84-281 4-164 (172)
56 PRK06762 hypothetical protein; 99.4 8E-13 1.7E-17 108.9 11.0 111 84-209 2-117 (166)
57 PRK13975 thymidylate kinase; P 99.4 1E-11 2.2E-16 104.9 17.9 116 84-209 2-135 (196)
58 COG1936 Predicted nucleotide k 99.4 2.3E-12 5.1E-17 104.8 13.0 105 85-210 1-105 (180)
59 PLN02422 dephospho-CoA kinase 99.4 1.7E-12 3.7E-17 112.3 12.8 165 85-256 2-195 (232)
60 PRK14731 coaE dephospho-CoA ki 99.4 1.3E-12 2.7E-17 112.0 11.6 120 83-209 4-155 (208)
61 PRK04182 cytidylate kinase; Pr 99.4 4.9E-12 1.1E-16 105.1 14.8 113 85-209 1-113 (180)
62 cd02022 DPCK Dephospho-coenzym 99.4 4.3E-12 9.3E-17 106.1 14.4 117 86-209 1-143 (179)
63 PLN02199 shikimate kinase 99.4 8.6E-12 1.9E-16 110.6 16.5 111 83-207 101-214 (303)
64 TIGR00152 dephospho-CoA kinase 99.4 2.5E-12 5.3E-17 108.3 12.2 117 86-209 1-145 (188)
65 PF01121 CoaE: Dephospho-CoA k 99.4 1.5E-12 3.3E-17 108.7 10.5 117 85-209 1-144 (180)
66 PRK07261 topology modulation p 99.4 8.8E-13 1.9E-17 109.5 8.9 101 85-210 1-101 (171)
67 cd00464 SK Shikimate kinase (S 99.4 1.1E-11 2.4E-16 100.4 14.9 109 87-209 2-113 (154)
68 PRK12339 2-phosphoglycerate ki 99.4 5.7E-12 1.2E-16 106.8 13.5 124 83-209 2-141 (197)
69 PRK14733 coaE dephospho-CoA ki 99.4 6.8E-12 1.5E-16 106.7 13.7 166 83-255 5-198 (204)
70 PRK14021 bifunctional shikimat 99.4 4.7E-12 1E-16 122.8 13.5 118 81-208 3-123 (542)
71 PTZ00451 dephospho-CoA kinase; 99.4 5E-12 1.1E-16 110.4 12.2 118 84-209 1-158 (244)
72 cd01673 dNK Deoxyribonucleosid 99.4 1.9E-11 4.1E-16 103.2 14.9 116 86-209 1-146 (193)
73 PRK07933 thymidylate kinase; V 99.4 1.4E-11 3E-16 105.8 13.6 171 85-281 1-205 (213)
74 cd02021 GntK Gluconate kinase 99.3 8.9E-12 1.9E-16 100.9 11.1 114 86-209 1-119 (150)
75 smart00072 GuKc Guanylate kina 99.3 2.5E-12 5.5E-17 107.9 7.8 136 84-256 2-154 (184)
76 KOG3220 Similar to bacterial d 99.3 1.5E-11 3.3E-16 102.1 12.1 171 84-261 1-200 (225)
77 PF02223 Thymidylate_kin: Thym 99.3 1.4E-11 3.1E-16 103.3 11.7 158 89-280 1-183 (186)
78 cd02030 NDUO42 NADH:Ubiquinone 99.3 4.9E-11 1.1E-15 102.9 14.7 124 86-209 1-164 (219)
79 PRK13976 thymidylate kinase; P 99.3 1.4E-11 3.1E-16 105.4 11.1 152 85-273 1-179 (209)
80 PRK14732 coaE dephospho-CoA ki 99.3 2.2E-11 4.8E-16 103.3 11.9 116 86-209 1-143 (196)
81 PF01202 SKI: Shikimate kinase 99.3 2.7E-11 5.9E-16 99.2 11.1 149 93-281 1-152 (158)
82 COG3265 GntK Gluconate kinase 99.3 2.4E-11 5.1E-16 96.3 9.7 118 90-218 1-121 (161)
83 COG1428 Deoxynucleoside kinase 99.3 5.3E-11 1.2E-15 100.0 12.2 61 187-272 126-187 (216)
84 PRK13951 bifunctional shikimat 99.3 1.4E-11 3.1E-16 117.8 9.8 108 85-208 1-112 (488)
85 PRK08154 anaerobic benzoate ca 99.3 7.3E-11 1.6E-15 107.0 13.6 114 82-209 131-248 (309)
86 TIGR01313 therm_gnt_kin carboh 99.3 5.7E-11 1.2E-15 97.5 11.7 111 87-209 1-115 (163)
87 cd02020 CMPK Cytidine monophos 99.3 4.1E-11 8.8E-16 96.1 10.5 103 86-208 1-103 (147)
88 KOG3354 Gluconate kinase [Carb 99.3 4.2E-11 9.1E-16 95.5 10.1 126 84-219 12-149 (191)
89 COG0194 Gmk Guanylate kinase [ 99.3 3.2E-11 6.9E-16 99.5 9.6 147 83-264 3-161 (191)
90 PRK14738 gmk guanylate kinase; 99.3 4.7E-12 1E-16 108.2 4.6 159 80-279 9-184 (206)
91 PRK03333 coaE dephospho-CoA ki 99.2 5.8E-11 1.3E-15 111.0 11.5 118 85-208 2-144 (395)
92 cd00227 CPT Chloramphenicol (C 99.2 7.2E-11 1.6E-15 98.2 10.6 123 84-209 2-132 (175)
93 PRK10078 ribose 1,5-bisphospho 99.2 9.4E-11 2E-15 98.5 10.5 118 85-209 3-132 (186)
94 PF13207 AAA_17: AAA domain; P 99.2 2.2E-11 4.7E-16 94.8 5.3 108 86-208 1-110 (121)
95 TIGR03574 selen_PSTK L-seryl-t 99.2 9.5E-11 2.1E-15 103.0 9.9 109 86-209 1-117 (249)
96 COG0283 Cmk Cytidylate kinase 99.2 9.3E-11 2E-15 98.8 7.7 39 85-123 5-43 (222)
97 PRK06547 hypothetical protein; 99.2 8.4E-11 1.8E-15 97.6 7.4 125 81-209 12-139 (172)
98 PRK11545 gntK gluconate kinase 99.2 3.9E-10 8.6E-15 92.8 11.1 109 90-211 1-114 (163)
99 PRK13477 bifunctional pantoate 99.1 2E-10 4.4E-15 109.7 10.1 40 83-122 283-322 (512)
100 PRK09825 idnK D-gluconate kina 99.1 8E-10 1.7E-14 92.2 12.2 122 84-220 3-131 (176)
101 COG4088 Predicted nucleotide k 99.1 5.9E-10 1.3E-14 93.2 10.7 118 84-210 1-124 (261)
102 KOG3877 NADH:ubiquinone oxidor 99.1 3.6E-09 7.8E-14 92.0 14.4 128 82-210 69-240 (393)
103 TIGR02322 phosphon_PhnN phosph 99.1 3.8E-10 8.3E-15 94.0 8.1 117 85-209 2-132 (179)
104 PRK05541 adenylylsulfate kinas 99.1 1.2E-09 2.6E-14 90.9 11.0 112 82-207 5-121 (176)
105 PRK12338 hypothetical protein; 99.1 2.1E-09 4.5E-14 96.9 13.2 129 82-210 2-152 (319)
106 COG0572 Udk Uridine kinase [Nu 99.1 1.3E-09 2.8E-14 92.8 10.7 117 82-209 6-149 (218)
107 PRK14737 gmk guanylate kinase; 99.1 2.7E-10 5.9E-15 95.8 6.5 125 82-209 2-138 (186)
108 COG0529 CysC Adenylylsulfate k 99.1 5.6E-09 1.2E-13 85.4 13.6 138 79-231 18-170 (197)
109 PRK05480 uridine/cytidine kina 99.0 2.1E-09 4.6E-14 91.9 11.5 119 82-209 4-147 (209)
110 TIGR00235 udk uridine kinase. 99.0 2.3E-09 4.9E-14 91.7 11.3 118 81-209 3-147 (207)
111 PF13238 AAA_18: AAA domain; P 99.0 1.7E-09 3.6E-14 84.5 9.4 109 87-210 1-114 (129)
112 PRK06696 uridine kinase; Valid 99.0 2.4E-09 5.1E-14 92.6 11.2 41 81-121 19-64 (223)
113 PRK07667 uridine kinase; Provi 99.0 6.9E-09 1.5E-13 87.8 13.0 123 81-209 14-160 (193)
114 TIGR01663 PNK-3'Pase polynucle 99.0 3.6E-09 7.8E-14 101.7 12.1 102 81-210 366-470 (526)
115 PLN02348 phosphoribulokinase 99.0 7.2E-09 1.6E-13 95.5 12.6 31 79-109 44-74 (395)
116 PRK00300 gmk guanylate kinase; 99.0 4.8E-09 1E-13 89.2 10.8 140 83-258 4-158 (205)
117 TIGR03263 guanyl_kin guanylate 99.0 3.2E-09 6.9E-14 88.4 9.4 136 85-256 2-152 (180)
118 COG2019 AdkA Archaeal adenylat 99.0 2.1E-08 4.6E-13 81.3 13.6 118 84-207 4-129 (189)
119 PF01583 APS_kinase: Adenylyls 99.0 5.9E-09 1.3E-13 84.8 9.9 107 83-205 1-117 (156)
120 cd02024 NRK1 Nicotinamide ribo 98.9 3.8E-09 8.2E-14 88.8 8.8 36 86-121 1-37 (187)
121 PRK03846 adenylylsulfate kinas 98.9 7.3E-08 1.6E-12 81.8 15.6 111 79-204 19-138 (198)
122 PF08433 KTI12: Chromatin asso 98.9 2.3E-08 5E-13 88.8 12.8 113 84-210 1-121 (270)
123 COG0645 Predicted kinase [Gene 98.9 4.3E-08 9.3E-13 79.9 13.2 121 85-211 2-127 (170)
124 cd02023 UMPK Uridine monophosp 98.9 1.1E-08 2.4E-13 86.7 10.1 35 86-120 1-38 (198)
125 TIGR00455 apsK adenylylsulfate 98.9 1.2E-07 2.7E-12 79.3 16.3 110 81-204 15-132 (184)
126 TIGR00017 cmk cytidylate kinas 98.9 3.2E-08 7E-13 85.2 12.9 39 84-122 2-40 (217)
127 PRK04220 2-phosphoglycerate ki 98.9 3.1E-08 6.7E-13 88.6 12.7 128 82-210 90-237 (301)
128 PRK00023 cmk cytidylate kinase 98.9 4.9E-09 1.1E-13 90.8 7.0 40 83-122 3-42 (225)
129 PTZ00301 uridine kinase; Provi 98.9 9.5E-09 2.1E-13 88.0 8.6 118 83-209 2-148 (210)
130 KOG3327 Thymidylate kinase/ade 98.9 2.3E-08 4.9E-13 82.2 10.3 121 82-209 3-145 (208)
131 cd02027 APSK Adenosine 5'-phos 98.8 4.4E-08 9.4E-13 79.4 11.7 110 86-207 1-116 (149)
132 PHA03132 thymidine kinase; Pro 98.8 1.6E-07 3.4E-12 90.8 17.3 127 83-209 256-423 (580)
133 PRK11860 bifunctional 3-phosph 98.8 1E-08 2.2E-13 102.1 8.1 39 84-122 442-480 (661)
134 PRK00889 adenylylsulfate kinas 98.8 8.7E-08 1.9E-12 79.5 12.1 108 83-205 3-117 (175)
135 PRK07429 phosphoribulokinase; 98.8 9.7E-08 2.1E-12 87.0 13.2 39 81-119 5-46 (327)
136 COG4639 Predicted kinase [Gene 98.8 5.1E-08 1.1E-12 78.2 9.6 112 85-208 3-117 (168)
137 PF07931 CPT: Chloramphenicol 98.8 2E-08 4.4E-13 83.3 7.5 125 85-210 2-132 (174)
138 PF06414 Zeta_toxin: Zeta toxi 98.8 1.2E-08 2.6E-13 86.7 6.3 120 80-209 11-142 (199)
139 PRK12337 2-phosphoglycerate ki 98.8 1.8E-07 3.9E-12 88.0 14.0 43 82-124 253-295 (475)
140 TIGR03575 selen_PSTK_euk L-ser 98.7 5E-08 1.1E-12 89.0 9.8 142 86-227 1-196 (340)
141 PRK09518 bifunctional cytidyla 98.7 1.4E-08 3.1E-13 101.8 6.4 38 85-122 2-39 (712)
142 PF00485 PRK: Phosphoribulokin 98.7 4.2E-08 9.2E-13 82.9 8.1 24 86-109 1-24 (194)
143 PRK05416 glmZ(sRNA)-inactivati 98.7 2.7E-07 5.8E-12 82.7 13.6 95 83-207 5-105 (288)
144 PRK05537 bifunctional sulfate 98.7 9E-08 2E-12 93.4 11.1 111 82-206 390-510 (568)
145 PRK05506 bifunctional sulfate 98.7 5E-07 1.1E-11 89.7 16.3 115 79-205 455-575 (632)
146 cd02025 PanK Pantothenate kina 98.7 4.5E-08 9.8E-13 84.5 7.8 34 86-119 1-41 (220)
147 PLN02772 guanylate kinase 98.7 3.1E-08 6.8E-13 91.3 6.7 142 83-256 134-287 (398)
148 PF00625 Guanylate_kin: Guanyl 98.7 1.3E-07 2.9E-12 79.1 9.1 118 84-209 2-136 (183)
149 cd02019 NK Nucleoside/nucleoti 98.6 1E-07 2.2E-12 67.0 6.7 60 86-196 1-63 (69)
150 PRK09270 nucleoside triphospha 98.6 5.8E-07 1.3E-11 78.0 12.1 29 81-109 30-58 (229)
151 PRK12269 bifunctional cytidyla 98.6 2.2E-07 4.7E-12 94.2 10.3 40 83-122 33-72 (863)
152 cd02026 PRK Phosphoribulokinas 98.6 4.4E-07 9.6E-12 80.8 11.0 34 86-119 1-37 (273)
153 PRK05439 pantothenate kinase; 98.6 1.4E-07 3E-12 85.2 7.7 41 81-121 83-130 (311)
154 PRK15453 phosphoribulokinase; 98.6 2.7E-07 5.9E-12 81.7 8.7 39 82-120 3-46 (290)
155 PLN02165 adenylate isopentenyl 98.6 7.5E-07 1.6E-11 80.8 11.7 39 80-118 39-77 (334)
156 cd02028 UMPK_like Uridine mono 98.5 2.5E-07 5.3E-12 77.4 7.4 36 86-121 1-41 (179)
157 PF03668 ATP_bind_2: P-loop AT 98.5 5.7E-06 1.2E-10 73.3 16.2 102 84-214 1-109 (284)
158 COG3709 Uncharacterized compon 98.5 4E-07 8.7E-12 73.5 7.3 153 83-277 4-170 (192)
159 TIGR00554 panK_bact pantothena 98.5 3.1E-07 6.8E-12 82.2 7.2 40 81-120 59-105 (290)
160 PF01591 6PF2K: 6-phosphofruct 98.4 3.8E-07 8.3E-12 78.5 6.5 152 82-260 10-179 (222)
161 PHA00729 NTP-binding motif con 98.4 2E-06 4.4E-11 74.0 10.8 111 82-210 15-141 (226)
162 COG2074 2-phosphoglycerate kin 98.4 6.3E-06 1.4E-10 71.3 12.9 46 80-125 85-130 (299)
163 PF13189 Cytidylate_kin2: Cyti 98.3 2.4E-06 5.1E-11 71.4 7.2 116 86-209 1-135 (179)
164 cd02029 PRK_like Phosphoribulo 98.3 2.8E-06 6E-11 74.8 7.6 35 86-120 1-40 (277)
165 KOG3308 Uncharacterized protei 98.2 1.4E-05 3.1E-10 66.9 10.2 122 82-211 2-151 (225)
166 PHA03136 thymidine kinase; Pro 98.2 6.4E-05 1.4E-09 69.1 14.8 25 186-210 190-214 (378)
167 PTZ00322 6-phosphofructo-2-kin 98.2 9.1E-06 2E-10 81.1 9.9 40 82-121 213-257 (664)
168 PF01745 IPT: Isopentenyl tran 98.2 1.2E-05 2.6E-10 68.1 8.9 121 84-208 1-138 (233)
169 PLN02318 phosphoribulokinase/u 98.2 1.5E-05 3.2E-10 77.2 10.6 39 81-119 62-101 (656)
170 COG1660 Predicted P-loop-conta 98.2 3.3E-05 7.2E-10 67.1 11.6 103 85-215 2-111 (286)
171 PRK09169 hypothetical protein; 98.1 8E-05 1.7E-09 80.4 16.7 110 83-208 2109-2220(2316)
172 COG4185 Uncharacterized protei 98.1 2.4E-05 5.2E-10 63.2 9.5 112 84-209 2-118 (187)
173 PRK00091 miaA tRNA delta(2)-is 98.0 5E-06 1.1E-10 75.2 4.7 36 83-118 3-38 (307)
174 KOG4235 Mitochondrial thymidin 98.0 9.9E-05 2.1E-09 61.6 11.7 25 185-209 151-175 (244)
175 KOG0635 Adenosine 5'-phosphosu 98.0 0.00012 2.6E-09 58.7 11.4 114 76-204 23-145 (207)
176 PF00004 AAA: ATPase family as 98.0 5.7E-06 1.2E-10 64.6 3.9 28 87-114 1-28 (132)
177 cd00071 GMPK Guanosine monopho 98.0 8.9E-06 1.9E-10 64.9 5.1 24 86-109 1-24 (137)
178 PF13173 AAA_14: AAA domain 98.0 0.00022 4.8E-09 56.0 12.6 115 84-226 2-123 (128)
179 PRK06761 hypothetical protein; 98.0 1.7E-05 3.6E-10 70.8 6.7 31 84-114 3-33 (282)
180 KOG3062 RNA polymerase II elon 97.9 3.6E-05 7.7E-10 65.6 7.8 115 84-210 1-124 (281)
181 KOG0733 Nuclear AAA ATPase (VC 97.9 8.5E-05 1.8E-09 71.6 11.0 117 85-207 224-371 (802)
182 PF08303 tRNA_lig_kinase: tRNA 97.9 0.00014 3E-09 59.3 10.5 32 87-118 2-34 (168)
183 PRK05800 cobU adenosylcobinami 97.9 3.1E-05 6.7E-10 64.1 6.7 33 85-117 2-36 (170)
184 TIGR03707 PPK2_P_aer polyphosp 97.9 0.00039 8.4E-09 60.3 13.5 153 81-274 28-205 (230)
185 COG1072 CoaA Panthothenate kin 97.8 3E-05 6.6E-10 68.1 5.4 28 81-108 79-106 (283)
186 PRK12724 flagellar biosynthesi 97.8 0.00034 7.4E-09 65.6 11.8 108 83-198 222-344 (432)
187 KOG0730 AAA+-type ATPase [Post 97.8 0.0002 4.2E-09 69.6 10.3 138 66-207 452-612 (693)
188 TIGR03709 PPK2_rel_1 polyphosp 97.7 0.00057 1.2E-08 60.4 12.3 152 82-274 54-230 (264)
189 PLN02840 tRNA dimethylallyltra 97.7 3.9E-05 8.5E-10 71.8 5.1 36 82-117 19-54 (421)
190 PF13521 AAA_28: AAA domain; P 97.7 2.4E-05 5.3E-10 64.0 3.3 37 86-125 1-37 (163)
191 CHL00195 ycf46 Ycf46; Provisio 97.7 0.00029 6.4E-09 67.7 10.2 34 82-115 257-290 (489)
192 PHA02575 1 deoxynucleoside mon 97.7 6.5E-05 1.4E-09 64.4 5.0 39 85-124 1-40 (227)
193 TIGR03708 poly_P_AMP_trns poly 97.6 0.00082 1.8E-08 64.4 12.7 150 81-274 37-214 (493)
194 COG1618 Predicted nucleotide k 97.6 6.1E-05 1.3E-09 61.1 4.0 27 83-109 4-30 (179)
195 KOG0744 AAA+-type ATPase [Post 97.6 5.2E-05 1.1E-09 67.9 3.4 29 85-113 178-206 (423)
196 PF07728 AAA_5: AAA domain (dy 97.6 8.6E-05 1.9E-09 58.9 4.2 27 87-113 2-28 (139)
197 KOG0731 AAA+-type ATPase conta 97.6 0.00052 1.1E-08 68.3 10.3 121 84-206 344-491 (774)
198 KOG4238 Bifunctional ATP sulfu 97.6 0.00071 1.5E-08 61.5 10.3 133 84-230 50-198 (627)
199 PF13401 AAA_22: AAA domain; P 97.5 0.00022 4.8E-09 55.6 6.3 25 84-108 4-28 (131)
200 PF05496 RuvB_N: Holliday junc 97.5 7.8E-05 1.7E-09 64.0 3.9 30 84-113 50-79 (233)
201 smart00382 AAA ATPases associa 97.5 8.1E-05 1.8E-09 57.6 3.3 28 84-111 2-29 (148)
202 TIGR00174 miaA tRNA isopenteny 97.5 8.3E-05 1.8E-09 66.6 3.7 33 86-118 1-33 (287)
203 KOG0707 Guanylate kinase [Nucl 97.5 0.00014 3.1E-09 62.2 4.6 26 85-110 38-63 (231)
204 TIGR00390 hslU ATP-dependent p 97.5 0.00011 2.5E-09 68.6 4.3 35 83-117 46-80 (441)
205 PLN02748 tRNA dimethylallyltra 97.5 0.00012 2.6E-09 69.7 4.4 36 82-117 20-55 (468)
206 PRK12402 replication factor C 97.5 0.0037 8.1E-08 56.9 14.1 36 83-118 35-77 (337)
207 COG3896 Chloramphenicol 3-O-ph 97.4 0.00089 1.9E-08 54.2 8.3 135 75-209 14-161 (205)
208 PRK12323 DNA polymerase III su 97.4 0.004 8.8E-08 61.4 14.2 29 82-110 36-64 (700)
209 COG3172 NadR Predicted ATPase/ 97.4 0.0042 9.1E-08 50.5 11.6 38 83-122 7-44 (187)
210 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00017 3.6E-09 66.3 3.9 29 82-110 76-104 (361)
211 PRK05201 hslU ATP-dependent pr 97.4 0.00018 3.9E-09 67.3 4.1 34 84-117 50-83 (443)
212 PF03976 PPK2: Polyphosphate k 97.4 0.00028 6.1E-09 61.1 5.0 149 82-274 29-205 (228)
213 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00025 5.4E-09 56.2 4.1 30 82-111 20-49 (133)
214 TIGR01223 Pmev_kin_anim phosph 97.3 0.0041 8.8E-08 51.4 11.3 114 86-207 1-134 (182)
215 PRK07003 DNA polymerase III su 97.3 0.0034 7.4E-08 62.8 12.7 29 83-111 37-65 (830)
216 COG0324 MiaA tRNA delta(2)-iso 97.3 0.00027 5.9E-09 63.6 4.7 36 83-118 2-37 (308)
217 PRK07764 DNA polymerase III su 97.3 0.0063 1.4E-07 62.2 14.5 30 82-111 35-64 (824)
218 COG2256 MGS1 ATPase related to 97.3 0.0011 2.5E-08 61.1 8.3 42 73-114 37-78 (436)
219 PLN00020 ribulose bisphosphate 97.3 0.00028 6E-09 65.0 4.2 38 82-119 146-185 (413)
220 PLN03025 replication factor C 97.3 0.0085 1.8E-07 54.6 14.0 27 82-108 32-58 (319)
221 cd00009 AAA The AAA+ (ATPases 97.3 0.00035 7.6E-09 54.6 4.4 26 83-108 18-43 (151)
222 PRK08099 bifunctional DNA-bind 97.3 0.00029 6.2E-09 66.2 4.3 40 82-123 217-256 (399)
223 TIGR01650 PD_CobS cobaltochela 97.3 0.00033 7.1E-09 63.7 4.6 30 85-114 65-94 (327)
224 PRK14961 DNA polymerase III su 97.2 0.011 2.4E-07 54.9 14.7 29 82-110 36-64 (363)
225 PLN02796 D-glycerate 3-kinase 97.2 0.00032 7E-09 64.1 4.3 38 82-119 98-140 (347)
226 TIGR02881 spore_V_K stage V sp 97.2 0.00033 7.1E-09 62.0 4.1 27 82-108 40-66 (261)
227 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0027 5.9E-08 61.5 10.3 32 84-115 545-576 (802)
228 PRK06620 hypothetical protein; 97.2 0.0016 3.4E-08 56.0 7.9 30 85-114 45-74 (214)
229 PF03266 NTPase_1: NTPase; In 97.2 0.00041 8.8E-09 57.4 4.0 23 86-108 1-23 (168)
230 PRK14957 DNA polymerase III su 97.2 0.0074 1.6E-07 58.8 13.1 28 83-110 37-64 (546)
231 PRK14956 DNA polymerase III su 97.2 0.0034 7.3E-08 60.0 10.5 28 84-111 40-67 (484)
232 KOG1384 tRNA delta(2)-isopente 97.2 0.0011 2.5E-08 59.5 6.8 36 83-118 6-41 (348)
233 PRK14964 DNA polymerase III su 97.2 0.011 2.4E-07 56.9 14.0 30 82-111 33-62 (491)
234 PRK14962 DNA polymerase III su 97.1 0.0065 1.4E-07 58.3 12.3 27 84-110 36-62 (472)
235 PLN03046 D-glycerate 3-kinase; 97.1 0.00047 1E-08 64.5 4.1 37 83-119 211-252 (460)
236 PRK09087 hypothetical protein; 97.1 0.00061 1.3E-08 59.1 4.7 37 85-121 45-81 (226)
237 PRK04328 hypothetical protein; 97.1 0.0015 3.2E-08 57.4 7.2 36 82-117 21-61 (249)
238 CHL00181 cbbX CbbX; Provisiona 97.1 0.00073 1.6E-08 60.7 5.2 26 83-108 58-83 (287)
239 TIGR03708 poly_P_AMP_trns poly 97.1 0.0085 1.8E-07 57.5 12.6 153 81-274 296-473 (493)
240 PRK13341 recombination factor 97.1 0.011 2.3E-07 59.7 13.8 37 81-117 49-85 (725)
241 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0017 3.6E-08 56.6 7.2 37 81-117 18-59 (237)
242 TIGR02640 gas_vesic_GvpN gas v 97.1 0.00055 1.2E-08 60.6 4.3 30 84-113 21-50 (262)
243 TIGR01526 nadR_NMN_Atrans nico 97.1 0.00057 1.2E-08 62.5 4.4 31 84-114 162-192 (325)
244 PF06745 KaiC: KaiC; InterPro 97.1 0.0015 3.2E-08 56.3 6.7 88 81-170 16-123 (226)
245 cd01124 KaiC KaiC is a circadi 97.1 0.00066 1.4E-08 56.4 4.4 32 86-117 1-37 (187)
246 PRK14960 DNA polymerase III su 97.1 0.012 2.7E-07 58.2 13.6 29 83-111 36-64 (702)
247 COG0466 Lon ATP-dependent Lon 97.1 0.00073 1.6E-08 66.4 5.1 42 80-121 346-389 (782)
248 PF03215 Rad17: Rad17 cell cyc 97.1 0.00077 1.7E-08 65.3 5.1 31 84-114 45-75 (519)
249 COG1222 RPT1 ATP-dependent 26S 97.1 0.003 6.5E-08 57.6 8.5 55 67-123 170-226 (406)
250 PRK14974 cell division protein 97.1 0.0029 6.4E-08 58.0 8.6 27 82-108 138-164 (336)
251 TIGR02655 circ_KaiC circadian 97.1 0.0011 2.4E-08 64.0 6.1 89 81-171 260-362 (484)
252 PRK03992 proteasome-activating 97.1 0.00058 1.3E-08 64.0 4.2 32 83-114 164-195 (389)
253 PF10662 PduV-EutP: Ethanolami 97.1 0.0005 1.1E-08 55.1 3.1 24 84-107 1-24 (143)
254 PF00910 RNA_helicase: RNA hel 97.1 0.00048 1E-08 52.4 3.0 22 87-108 1-22 (107)
255 PRK00771 signal recognition pa 97.0 0.0017 3.7E-08 61.6 7.2 27 82-108 93-119 (437)
256 PF00448 SRP54: SRP54-type pro 97.0 0.00068 1.5E-08 57.5 4.1 25 84-108 1-25 (196)
257 cd00544 CobU Adenosylcobinamid 97.0 0.0016 3.4E-08 53.9 6.1 25 86-110 1-25 (169)
258 PRK07940 DNA polymerase III su 97.0 0.024 5.3E-07 53.2 14.8 29 83-111 35-63 (394)
259 PRK12377 putative replication 97.0 0.0085 1.8E-07 52.7 11.0 38 84-121 101-143 (248)
260 PRK14963 DNA polymerase III su 97.0 0.013 2.9E-07 56.7 13.4 29 82-110 34-62 (504)
261 PRK05342 clpX ATP-dependent pr 97.0 0.00058 1.3E-08 64.3 3.9 32 85-116 109-140 (412)
262 KOG1969 DNA replication checkp 97.0 0.0018 3.9E-08 63.8 7.3 35 81-115 323-357 (877)
263 PHA03134 thymidine kinase; Pro 97.0 0.087 1.9E-06 48.1 17.4 26 82-107 11-36 (340)
264 PRK12723 flagellar biosynthesi 97.0 0.006 1.3E-07 57.1 10.4 26 83-108 173-198 (388)
265 PRK06067 flagellar accessory p 97.0 0.0022 4.7E-08 55.7 7.0 40 81-120 22-66 (234)
266 PRK14951 DNA polymerase III su 97.0 0.025 5.4E-07 56.0 15.0 29 82-110 36-64 (618)
267 KOG0735 AAA+-type ATPase [Post 97.0 0.0047 1E-07 60.9 9.6 40 84-123 701-742 (952)
268 PF07726 AAA_3: ATPase family 97.0 0.00046 9.9E-09 54.2 2.3 28 87-114 2-29 (131)
269 TIGR01618 phage_P_loop phage n 97.0 0.00094 2E-08 57.6 4.4 35 82-118 10-44 (220)
270 PRK14949 DNA polymerase III su 97.0 0.014 2.9E-07 59.7 13.1 30 82-111 36-65 (944)
271 PF03029 ATP_bind_1: Conserved 97.0 0.00056 1.2E-08 59.8 3.0 21 89-109 1-21 (238)
272 PF02367 UPF0079: Uncharacteri 97.0 0.0013 2.7E-08 51.5 4.6 30 82-111 13-42 (123)
273 PRK10751 molybdopterin-guanine 97.0 0.00093 2E-08 55.4 4.1 27 82-108 4-30 (173)
274 PHA02244 ATPase-like protein 97.0 0.00083 1.8E-08 62.0 4.1 36 84-119 119-154 (383)
275 PRK14729 miaA tRNA delta(2)-is 97.0 0.0011 2.3E-08 59.8 4.8 34 84-118 4-37 (300)
276 PRK06645 DNA polymerase III su 96.9 0.015 3.3E-07 56.2 12.9 30 82-111 41-70 (507)
277 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.0027 5.8E-08 54.8 7.0 36 81-116 17-57 (229)
278 PRK14969 DNA polymerase III su 96.9 0.011 2.5E-07 57.5 12.1 30 82-111 36-65 (527)
279 PF05729 NACHT: NACHT domain 96.9 0.00083 1.8E-08 54.2 3.6 23 86-108 2-24 (166)
280 PF07724 AAA_2: AAA domain (Cd 96.9 0.0012 2.7E-08 54.6 4.7 26 85-110 4-29 (171)
281 TIGR01242 26Sp45 26S proteasom 96.9 0.001 2.2E-08 61.8 4.5 32 84-115 156-187 (364)
282 PRK14958 DNA polymerase III su 96.9 0.012 2.5E-07 57.2 12.0 30 82-111 36-65 (509)
283 KOG2702 Predicted panthothenat 96.9 0.004 8.6E-08 53.6 7.7 26 84-109 119-144 (323)
284 PRK04195 replication factor C 96.9 0.00087 1.9E-08 64.6 4.2 32 84-115 39-70 (482)
285 COG2255 RuvB Holliday junction 96.9 0.0034 7.3E-08 55.7 7.4 27 86-112 54-80 (332)
286 PF13245 AAA_19: Part of AAA d 96.9 0.0011 2.4E-08 47.3 3.7 26 83-108 9-35 (76)
287 PTZ00454 26S protease regulato 96.9 0.001 2.2E-08 62.5 4.5 33 83-115 178-210 (398)
288 PF03308 ArgK: ArgK protein; 96.9 0.0014 3E-08 57.5 4.9 30 79-108 24-53 (266)
289 TIGR00382 clpX endopeptidase C 96.9 0.00093 2E-08 62.8 4.1 30 85-114 117-146 (413)
290 cd00820 PEPCK_HprK Phosphoenol 96.9 0.0013 2.7E-08 50.2 4.0 34 83-118 14-47 (107)
291 PRK14950 DNA polymerase III su 96.9 0.018 3.9E-07 56.9 13.2 30 82-111 36-65 (585)
292 PRK14965 DNA polymerase III su 96.9 0.018 3.8E-07 56.8 12.9 30 82-111 36-65 (576)
293 TIGR00635 ruvB Holliday juncti 96.9 0.0013 2.7E-08 59.4 4.6 29 84-112 30-58 (305)
294 PHA03135 thymidine kinase; Pro 96.9 0.049 1.1E-06 49.7 14.7 26 82-107 8-33 (343)
295 TIGR02880 cbbX_cfxQ probable R 96.9 0.0012 2.7E-08 59.1 4.4 24 85-108 59-82 (284)
296 KOG0739 AAA+-type ATPase [Post 96.9 0.012 2.7E-07 52.6 10.4 38 86-123 168-207 (439)
297 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0013 2.8E-08 56.4 4.4 39 81-119 35-78 (226)
298 KOG0738 AAA+-type ATPase [Post 96.9 0.021 4.4E-07 52.9 12.1 31 86-116 247-277 (491)
299 TIGR01243 CDC48 AAA family ATP 96.9 0.0086 1.9E-07 60.8 10.9 32 84-115 487-518 (733)
300 PTZ00202 tuzin; Provisional 96.8 0.0048 1E-07 58.2 8.1 29 84-112 286-314 (550)
301 KOG2004 Mitochondrial ATP-depe 96.8 0.0011 2.5E-08 65.1 4.2 41 80-120 434-476 (906)
302 PRK14952 DNA polymerase III su 96.8 0.026 5.6E-07 55.6 13.5 30 82-111 33-62 (584)
303 TIGR01241 FtsH_fam ATP-depende 96.8 0.0011 2.4E-08 64.1 4.0 32 84-115 88-119 (495)
304 PRK13342 recombination factor 96.8 0.0017 3.8E-08 61.3 5.3 35 81-115 33-67 (413)
305 PRK00440 rfc replication facto 96.8 0.021 4.6E-07 51.4 12.2 25 84-108 38-62 (319)
306 PRK00080 ruvB Holliday junctio 96.8 0.0014 3E-08 60.0 4.4 30 84-113 51-80 (328)
307 PRK11784 tRNA 2-selenouridine 96.8 0.0057 1.2E-07 56.3 8.4 111 84-210 141-258 (345)
308 COG1126 GlnQ ABC-type polar am 96.8 0.0011 2.5E-08 56.4 3.4 25 81-105 25-49 (240)
309 PRK08084 DNA replication initi 96.8 0.002 4.2E-08 56.2 5.0 35 83-117 44-83 (235)
310 PRK08116 hypothetical protein; 96.8 0.013 2.7E-07 52.2 10.1 37 85-121 115-156 (268)
311 PRK07994 DNA polymerase III su 96.8 0.012 2.5E-07 58.5 10.7 30 82-111 36-65 (647)
312 COG1855 ATPase (PilT family) [ 96.8 0.0011 2.4E-08 62.0 3.3 24 85-108 264-287 (604)
313 PRK08533 flagellar accessory p 96.8 0.0045 9.8E-08 53.8 7.0 35 82-116 22-61 (230)
314 cd01918 HprK_C HprK/P, the bif 96.8 0.0014 3.1E-08 52.9 3.6 33 83-117 13-45 (149)
315 COG4619 ABC-type uncharacteriz 96.8 0.0013 2.8E-08 54.1 3.3 25 82-106 27-51 (223)
316 COG1116 TauB ABC-type nitrate/ 96.8 0.0013 2.9E-08 57.1 3.5 27 80-106 25-51 (248)
317 PRK09111 DNA polymerase III su 96.8 0.011 2.5E-07 58.3 10.5 30 83-112 45-74 (598)
318 COG3911 Predicted ATPase [Gene 96.7 0.0015 3.2E-08 52.5 3.4 30 83-113 8-37 (183)
319 KOG0991 Replication factor C, 96.7 0.0034 7.3E-08 54.2 5.8 32 77-108 41-72 (333)
320 PRK08903 DnaA regulatory inact 96.7 0.0026 5.6E-08 54.8 5.2 36 84-119 42-82 (227)
321 PRK06893 DNA replication initi 96.7 0.0021 4.5E-08 55.8 4.6 33 84-116 39-76 (229)
322 PF06309 Torsin: Torsin; Inte 96.7 0.0021 4.6E-08 50.2 4.1 29 80-108 49-77 (127)
323 PF13191 AAA_16: AAA ATPase do 96.7 0.0015 3.3E-08 53.8 3.6 29 80-108 20-48 (185)
324 PTZ00361 26 proteosome regulat 96.7 0.0018 3.8E-08 61.5 4.3 32 83-114 216-247 (438)
325 PRK14959 DNA polymerase III su 96.7 0.039 8.4E-07 54.5 13.7 27 84-110 38-64 (624)
326 TIGR02397 dnaX_nterm DNA polym 96.7 0.053 1.1E-06 49.8 14.1 28 83-110 35-62 (355)
327 PRK14086 dnaA chromosomal repl 96.7 0.017 3.7E-07 56.8 11.2 37 86-122 316-359 (617)
328 TIGR02655 circ_KaiC circadian 96.7 0.0048 1E-07 59.5 7.3 38 81-118 18-61 (484)
329 PRK14088 dnaA chromosomal repl 96.7 0.0096 2.1E-07 56.8 9.1 38 85-122 131-175 (440)
330 KOG1970 Checkpoint RAD17-RFC c 96.7 0.0017 3.7E-08 62.1 3.9 31 83-113 109-139 (634)
331 TIGR03015 pepcterm_ATPase puta 96.7 0.0017 3.7E-08 57.2 3.7 28 82-109 41-68 (269)
332 COG3839 MalK ABC-type sugar tr 96.7 0.0016 3.4E-08 59.5 3.5 26 81-106 26-51 (338)
333 PRK05896 DNA polymerase III su 96.6 0.052 1.1E-06 53.5 14.1 29 82-110 36-64 (605)
334 PRK13695 putative NTPase; Prov 96.6 0.0019 4.1E-08 53.4 3.7 24 85-108 1-24 (174)
335 PRK09435 membrane ATPase/prote 96.6 0.0027 5.7E-08 58.2 4.9 28 81-108 53-80 (332)
336 TIGR00678 holB DNA polymerase 96.6 0.094 2E-06 43.7 14.0 29 82-110 12-40 (188)
337 CHL00176 ftsH cell division pr 96.6 0.002 4.4E-08 64.0 4.3 32 84-115 216-247 (638)
338 PF03205 MobB: Molybdopterin g 96.6 0.0022 4.7E-08 51.4 3.7 24 85-108 1-24 (140)
339 PF01695 IstB_IS21: IstB-like 96.6 0.0037 8E-08 52.1 5.2 41 82-122 45-90 (178)
340 PRK14954 DNA polymerase III su 96.6 0.07 1.5E-06 53.0 14.9 30 82-111 36-65 (620)
341 cd03115 SRP The signal recogni 96.6 0.0021 4.6E-08 52.9 3.8 31 86-116 2-37 (173)
342 TIGR00101 ureG urease accessor 96.6 0.0023 5E-08 54.3 4.0 25 84-108 1-25 (199)
343 cd01131 PilT Pilus retraction 96.6 0.002 4.4E-08 54.6 3.7 24 86-109 3-26 (198)
344 PF01712 dNK: Deoxynucleoside 96.6 0.002 4.3E-08 51.9 3.4 26 185-210 64-90 (146)
345 KOG1532 GTPase XAB1, interacts 96.6 0.0073 1.6E-07 53.3 7.0 43 80-122 15-62 (366)
346 PRK00149 dnaA chromosomal repl 96.6 0.011 2.4E-07 56.5 8.9 37 85-121 149-192 (450)
347 PF08477 Miro: Miro-like prote 96.6 0.0024 5.1E-08 48.8 3.5 22 86-107 1-22 (119)
348 PRK06305 DNA polymerase III su 96.6 0.045 9.8E-07 52.4 12.9 29 83-111 38-66 (451)
349 PRK06526 transposase; Provisio 96.6 0.003 6.4E-08 55.8 4.5 39 83-121 97-140 (254)
350 COG1703 ArgK Putative periplas 96.6 0.0028 6.1E-08 56.5 4.3 31 78-108 45-75 (323)
351 PRK15455 PrkA family serine pr 96.6 0.0023 5E-08 62.2 4.0 28 81-108 100-127 (644)
352 PHA03138 thymidine kinase; Pro 96.5 0.061 1.3E-06 49.1 12.8 27 82-108 10-36 (340)
353 cd03116 MobB Molybdenum is an 96.5 0.0029 6.3E-08 51.8 4.0 25 84-108 1-25 (159)
354 PRK13768 GTPase; Provisional 96.5 0.003 6.5E-08 55.7 4.4 25 84-108 2-26 (253)
355 TIGR00362 DnaA chromosomal rep 96.5 0.016 3.5E-07 54.5 9.6 37 85-121 137-180 (405)
356 PRK06835 DNA replication prote 96.5 0.025 5.3E-07 51.9 10.4 38 85-122 184-226 (329)
357 PRK09183 transposase/IS protei 96.5 0.0041 8.9E-08 55.0 5.2 40 82-121 100-144 (259)
358 PF00308 Bac_DnaA: Bacterial d 96.5 0.073 1.6E-06 45.8 12.7 39 85-123 35-80 (219)
359 PRK10416 signal recognition pa 96.5 0.003 6.6E-08 57.5 4.3 27 82-108 112-138 (318)
360 cd01120 RecA-like_NTPases RecA 96.5 0.0022 4.9E-08 51.3 3.1 23 86-108 1-23 (165)
361 TIGR00064 ftsY signal recognit 96.5 0.0033 7.2E-08 56.0 4.4 27 82-108 70-96 (272)
362 TIGR03689 pup_AAA proteasome A 96.5 0.0023 5E-08 61.8 3.6 28 84-111 216-243 (512)
363 COG1136 SalX ABC-type antimicr 96.5 0.0026 5.6E-08 54.9 3.5 26 81-106 28-53 (226)
364 TIGR00763 lon ATP-dependent pr 96.5 0.0031 6.6E-08 64.3 4.6 32 83-114 346-377 (775)
365 PRK14948 DNA polymerase III su 96.5 0.092 2E-06 52.2 14.8 28 84-111 38-65 (620)
366 COG0467 RAD55 RecA-superfamily 96.5 0.0031 6.7E-08 55.6 4.1 38 81-118 20-62 (260)
367 KOG0734 AAA+-type ATPase conta 96.5 0.015 3.2E-07 55.8 8.6 32 84-115 337-368 (752)
368 COG0464 SpoVK ATPases of the A 96.5 0.0029 6.3E-08 61.1 4.2 34 82-115 274-307 (494)
369 cd04163 Era Era subfamily. Er 96.5 0.0029 6.2E-08 50.5 3.5 23 84-106 3-25 (168)
370 COG1484 DnaC DNA replication p 96.5 0.018 3.9E-07 50.8 8.8 40 83-122 104-148 (254)
371 PRK10646 ADP-binding protein; 96.4 0.0054 1.2E-07 49.7 5.0 29 82-110 26-54 (153)
372 cd01130 VirB11-like_ATPase Typ 96.4 0.0036 7.8E-08 52.4 4.1 27 82-108 23-49 (186)
373 COG3842 PotA ABC-type spermidi 96.4 0.0027 5.8E-08 58.4 3.5 26 81-106 28-53 (352)
374 PRK10733 hflB ATP-dependent me 96.4 0.037 8E-07 55.3 11.8 31 85-115 186-216 (644)
375 PRK06647 DNA polymerase III su 96.4 0.086 1.9E-06 51.8 14.0 30 82-111 36-65 (563)
376 PRK08181 transposase; Validate 96.4 0.0057 1.2E-07 54.4 5.3 40 83-122 105-149 (269)
377 COG1124 DppF ABC-type dipeptid 96.4 0.003 6.5E-08 54.7 3.4 26 81-106 30-55 (252)
378 PRK07133 DNA polymerase III su 96.4 0.031 6.7E-07 56.1 10.9 30 82-111 38-67 (725)
379 PF13555 AAA_29: P-loop contai 96.4 0.0047 1E-07 42.2 3.6 22 85-106 24-45 (62)
380 TIGR03499 FlhF flagellar biosy 96.4 0.0038 8.2E-08 55.9 4.1 26 83-108 193-218 (282)
381 CHL00206 ycf2 Ycf2; Provisiona 96.4 0.0039 8.4E-08 67.6 4.7 37 84-120 1630-1668(2281)
382 KOG1534 Putative transcription 96.3 0.011 2.3E-07 50.3 6.3 33 85-117 4-41 (273)
383 TIGR02012 tigrfam_recA protein 96.3 0.014 3E-07 53.2 7.6 39 81-119 52-95 (321)
384 TIGR01243 CDC48 AAA family ATP 96.3 0.0038 8.2E-08 63.3 4.4 33 83-115 211-243 (733)
385 KOG0737 AAA+-type ATPase [Post 96.3 0.003 6.6E-08 57.7 3.2 33 83-115 126-158 (386)
386 PRK05707 DNA polymerase III su 96.3 0.057 1.2E-06 49.4 11.6 31 81-111 19-49 (328)
387 PHA02544 44 clamp loader, smal 96.3 0.0042 9E-08 56.3 4.1 30 83-112 42-71 (316)
388 TIGR01166 cbiO cobalt transpor 96.3 0.0037 8E-08 52.3 3.5 27 81-107 15-41 (190)
389 COG1220 HslU ATP-dependent pro 96.3 0.028 6.1E-07 51.1 9.2 33 82-114 48-80 (444)
390 PF13086 AAA_11: AAA domain; P 96.3 0.0058 1.3E-07 52.0 4.8 26 83-108 16-41 (236)
391 PF00005 ABC_tran: ABC transpo 96.3 0.0032 6.8E-08 49.5 2.9 26 83-108 10-35 (137)
392 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.3 0.0038 8.2E-08 53.4 3.5 28 81-108 27-54 (218)
393 COG0714 MoxR-like ATPases [Gen 96.3 0.0041 8.8E-08 56.9 3.9 32 83-114 42-73 (329)
394 TIGR02236 recomb_radA DNA repa 96.3 0.02 4.3E-07 51.9 8.4 27 81-107 92-118 (310)
395 TIGR00960 3a0501s02 Type II (G 96.3 0.0039 8.4E-08 53.3 3.5 27 82-108 27-53 (216)
396 COG2326 Uncharacterized conser 96.3 0.062 1.4E-06 46.9 10.8 110 81-212 71-203 (270)
397 COG1120 FepC ABC-type cobalami 96.3 0.0039 8.5E-08 54.9 3.5 36 79-114 23-62 (258)
398 COG1117 PstB ABC-type phosphat 96.3 0.004 8.6E-08 53.1 3.3 28 79-106 28-55 (253)
399 cd04155 Arl3 Arl3 subfamily. 96.3 0.0052 1.1E-07 50.1 4.0 26 82-107 12-37 (173)
400 cd03292 ABC_FtsE_transporter F 96.2 0.0041 8.9E-08 53.0 3.5 27 82-108 25-51 (214)
401 PRK14722 flhF flagellar biosyn 96.2 0.0046 9.9E-08 57.5 4.0 26 83-108 136-161 (374)
402 cd00983 recA RecA is a bacter 96.2 0.022 4.7E-07 52.0 8.3 37 81-117 52-93 (325)
403 TIGR00750 lao LAO/AO transport 96.2 0.0053 1.1E-07 55.5 4.3 29 80-108 30-58 (300)
404 cd03225 ABC_cobalt_CbiO_domain 96.2 0.0044 9.6E-08 52.7 3.6 28 81-108 24-51 (211)
405 COG1219 ClpX ATP-dependent pro 96.2 0.0052 1.1E-07 55.3 4.0 32 84-115 97-128 (408)
406 COG2884 FtsE Predicted ATPase 96.2 0.0051 1.1E-07 51.5 3.7 30 79-108 23-52 (223)
407 COG1223 Predicted ATPase (AAA+ 96.2 0.0039 8.5E-08 54.7 3.2 32 84-115 151-182 (368)
408 PRK10787 DNA-binding ATP-depen 96.2 0.0052 1.1E-07 62.6 4.5 33 82-114 347-379 (784)
409 TIGR00073 hypB hydrogenase acc 96.2 0.0054 1.2E-07 52.2 4.1 29 81-109 19-47 (207)
410 PRK14970 DNA polymerase III su 96.2 0.12 2.7E-06 47.8 13.4 29 82-110 37-65 (367)
411 PRK05564 DNA polymerase III su 96.2 0.082 1.8E-06 47.9 12.0 30 81-110 23-52 (313)
412 cd03224 ABC_TM1139_LivF_branch 96.2 0.0046 1E-07 52.9 3.6 27 81-107 23-49 (222)
413 TIGR00176 mobB molybdopterin-g 96.2 0.0044 9.6E-08 50.5 3.3 23 86-108 1-23 (155)
414 cd03269 ABC_putative_ATPase Th 96.2 0.0047 1E-07 52.5 3.6 26 82-107 24-49 (210)
415 TIGR02673 FtsE cell division A 96.2 0.0046 9.9E-08 52.7 3.5 28 81-108 25-52 (214)
416 TIGR02237 recomb_radB DNA repa 96.2 0.0062 1.3E-07 51.7 4.3 36 82-117 10-50 (209)
417 PF01926 MMR_HSR1: 50S ribosom 96.2 0.0048 1E-07 47.1 3.3 21 86-106 1-21 (116)
418 cd03261 ABC_Org_Solvent_Resist 96.2 0.0047 1E-07 53.5 3.5 28 81-108 23-50 (235)
419 COG4240 Predicted kinase [Gene 96.2 0.0074 1.6E-07 51.9 4.5 41 82-122 48-94 (300)
420 PRK07952 DNA replication prote 96.2 0.0077 1.7E-07 52.8 4.9 37 85-121 100-141 (244)
421 cd01983 Fer4_NifH The Fer4_Nif 96.2 0.0067 1.5E-07 43.9 3.9 31 86-116 1-34 (99)
422 cd03229 ABC_Class3 This class 96.2 0.0051 1.1E-07 51.0 3.6 27 81-107 23-49 (178)
423 cd03260 ABC_PstB_phosphate_tra 96.2 0.005 1.1E-07 53.0 3.6 27 82-108 24-50 (227)
424 PRK09302 circadian clock prote 96.1 0.013 2.9E-07 56.8 6.9 88 81-170 270-371 (509)
425 cd03259 ABC_Carb_Solutes_like 96.1 0.0051 1.1E-07 52.4 3.6 27 81-107 23-49 (213)
426 cd03219 ABC_Mj1267_LivG_branch 96.1 0.0047 1E-07 53.5 3.4 27 81-107 23-49 (236)
427 cd03263 ABC_subfamily_A The AB 96.1 0.0051 1.1E-07 52.6 3.6 28 81-108 25-52 (220)
428 TIGR02315 ABC_phnC phosphonate 96.1 0.005 1.1E-07 53.6 3.5 28 81-108 25-52 (243)
429 cd01394 radB RadB. The archaea 96.1 0.0066 1.4E-07 51.9 4.2 35 82-116 17-56 (218)
430 cd03256 ABC_PhnC_transporter A 96.1 0.005 1.1E-07 53.4 3.5 27 81-107 24-50 (241)
431 cd03262 ABC_HisP_GlnQ_permease 96.1 0.0052 1.1E-07 52.3 3.5 27 82-108 24-50 (213)
432 cd03222 ABC_RNaseL_inhibitor T 96.1 0.005 1.1E-07 51.3 3.3 26 82-107 23-48 (177)
433 cd03301 ABC_MalK_N The N-termi 96.1 0.0053 1.2E-07 52.3 3.6 28 81-108 23-50 (213)
434 TIGR02211 LolD_lipo_ex lipopro 96.1 0.0052 1.1E-07 52.6 3.6 27 82-108 29-55 (221)
435 cd03235 ABC_Metallic_Cations A 96.1 0.0047 1E-07 52.6 3.2 27 81-107 22-48 (213)
436 PRK06921 hypothetical protein; 96.1 0.0089 1.9E-07 53.1 5.1 39 83-121 116-160 (266)
437 PHA02624 large T antigen; Prov 96.1 0.0099 2.2E-07 58.1 5.7 37 80-116 427-463 (647)
438 PRK04296 thymidine kinase; Pro 96.1 0.0058 1.3E-07 51.4 3.7 25 84-108 2-26 (190)
439 PRK09302 circadian clock prote 96.1 0.032 7E-07 54.2 9.4 37 81-117 28-70 (509)
440 cd03226 ABC_cobalt_CbiO_domain 96.1 0.0051 1.1E-07 52.1 3.4 26 82-107 24-49 (205)
441 TIGR03608 L_ocin_972_ABC putat 96.1 0.0053 1.1E-07 52.0 3.5 27 82-108 22-48 (206)
442 PRK14490 putative bifunctional 96.1 0.006 1.3E-07 56.8 4.2 28 82-109 3-30 (369)
443 COG0802 Predicted ATPase or ki 96.1 0.0072 1.6E-07 48.6 4.0 30 81-110 22-51 (149)
444 KOG0780 Signal recognition par 96.1 0.061 1.3E-06 49.7 10.3 42 80-121 97-142 (483)
445 KOG4622 Predicted nucleotide k 96.1 0.024 5.3E-07 47.6 7.1 36 86-121 3-44 (291)
446 PRK13541 cytochrome c biogenes 96.1 0.0056 1.2E-07 51.5 3.5 27 82-108 24-50 (195)
447 PRK11629 lolD lipoprotein tran 96.1 0.0054 1.2E-07 53.1 3.5 28 81-108 32-59 (233)
448 cd03257 ABC_NikE_OppD_transpor 96.1 0.0052 1.1E-07 52.8 3.4 29 80-108 27-55 (228)
449 cd03293 ABC_NrtD_SsuB_transpor 96.1 0.0053 1.1E-07 52.6 3.4 27 81-107 27-53 (220)
450 cd03230 ABC_DR_subfamily_A Thi 96.1 0.0059 1.3E-07 50.4 3.5 27 81-107 23-49 (173)
451 KOG0745 Putative ATP-dependent 96.1 0.0065 1.4E-07 56.8 4.1 31 85-115 227-257 (564)
452 cd03264 ABC_drug_resistance_li 96.1 0.0051 1.1E-07 52.3 3.3 24 83-107 25-48 (211)
453 KOG0736 Peroxisome assembly fa 96.1 0.05 1.1E-06 54.3 10.3 30 86-115 707-736 (953)
454 cd03296 ABC_CysA_sulfate_impor 96.1 0.0056 1.2E-07 53.2 3.5 27 82-108 26-52 (239)
455 cd03247 ABCC_cytochrome_bd The 96.1 0.0059 1.3E-07 50.6 3.5 29 80-108 24-52 (178)
456 cd03223 ABCD_peroxisomal_ALDP 96.1 0.006 1.3E-07 50.1 3.5 27 82-108 25-51 (166)
457 KOG1533 Predicted GTPase [Gene 96.1 0.004 8.6E-08 53.7 2.4 23 86-108 4-26 (290)
458 cd03258 ABC_MetN_methionine_tr 96.1 0.0058 1.3E-07 52.8 3.5 28 81-108 28-55 (233)
459 cd03283 ABC_MutS-like MutS-lik 96.1 0.0054 1.2E-07 52.1 3.3 22 85-106 26-47 (199)
460 TIGR03864 PQQ_ABC_ATP ABC tran 96.1 0.0058 1.3E-07 53.0 3.6 27 81-107 24-50 (236)
461 COG0378 HypB Ni2+-binding GTPa 96.1 0.008 1.7E-07 50.4 4.2 31 84-114 13-47 (202)
462 cd03265 ABC_DrrA DrrA is the A 96.1 0.006 1.3E-07 52.3 3.6 26 82-107 24-49 (220)
463 TIGR03880 KaiC_arch_3 KaiC dom 96.1 0.017 3.8E-07 49.6 6.5 36 82-117 14-54 (224)
464 cd03238 ABC_UvrA The excision 96.0 0.006 1.3E-07 50.8 3.4 25 82-106 19-43 (176)
465 PRK12422 chromosomal replicati 96.0 0.039 8.5E-07 52.7 9.3 37 85-121 142-183 (445)
466 PRK15177 Vi polysaccharide exp 96.0 0.0061 1.3E-07 52.2 3.5 26 82-107 11-36 (213)
467 PRK05642 DNA replication initi 96.0 0.0099 2.2E-07 51.7 4.9 36 85-120 46-86 (234)
468 PRK10247 putative ABC transpor 96.0 0.0062 1.3E-07 52.5 3.6 27 81-107 30-56 (225)
469 PRK13540 cytochrome c biogenes 96.0 0.0064 1.4E-07 51.4 3.6 29 80-108 23-51 (200)
470 COG1419 FlhF Flagellar GTP-bin 96.0 0.02 4.3E-07 53.3 7.0 26 84-109 203-228 (407)
471 cd03232 ABC_PDR_domain2 The pl 96.0 0.0063 1.4E-07 51.2 3.5 25 82-106 31-55 (192)
472 cd03218 ABC_YhbG The ABC trans 96.0 0.0063 1.4E-07 52.5 3.6 26 82-107 24-49 (232)
473 TIGR03410 urea_trans_UrtE urea 96.0 0.0061 1.3E-07 52.6 3.5 29 80-108 22-50 (230)
474 KOG0743 AAA+-type ATPase [Post 96.0 0.0051 1.1E-07 57.7 3.1 30 86-115 237-266 (457)
475 PRK11331 5-methylcytosine-spec 96.0 0.0055 1.2E-07 58.1 3.3 27 83-109 193-219 (459)
476 TIGR01978 sufC FeS assembly AT 96.0 0.0062 1.3E-07 52.9 3.5 27 81-107 23-49 (243)
477 cd03246 ABCC_Protease_Secretio 96.0 0.0069 1.5E-07 50.0 3.6 28 81-108 25-52 (173)
478 PRK14250 phosphate ABC transpo 96.0 0.0063 1.4E-07 53.0 3.5 27 82-108 27-53 (241)
479 cd03268 ABC_BcrA_bacitracin_re 96.0 0.0067 1.5E-07 51.5 3.6 27 81-107 23-49 (208)
480 PRK10584 putative ABC transpor 96.0 0.0066 1.4E-07 52.3 3.5 28 81-108 33-60 (228)
481 TIGR01425 SRP54_euk signal rec 96.0 0.0075 1.6E-07 57.0 4.1 26 83-108 99-124 (429)
482 PRK11248 tauB taurine transpor 96.0 0.0064 1.4E-07 53.5 3.5 27 81-107 24-50 (255)
483 PRK14493 putative bifunctional 96.0 0.0073 1.6E-07 53.9 3.9 25 84-108 1-25 (274)
484 PRK14247 phosphate ABC transpo 96.0 0.0065 1.4E-07 53.2 3.5 28 81-108 26-53 (250)
485 PRK14955 DNA polymerase III su 96.0 0.0072 1.6E-07 56.8 4.0 29 83-111 37-65 (397)
486 TIGR02323 CP_lyasePhnK phospho 96.0 0.0063 1.4E-07 53.3 3.4 28 81-108 26-53 (253)
487 PF06068 TIP49: TIP49 C-termin 96.0 0.0065 1.4E-07 55.9 3.6 32 82-113 48-81 (398)
488 PF05673 DUF815: Protein of un 96.0 0.12 2.6E-06 45.2 11.2 31 84-114 52-85 (249)
489 PRK14242 phosphate transporter 96.0 0.0063 1.4E-07 53.3 3.4 27 81-107 29-55 (253)
490 PRK10867 signal recognition pa 96.0 0.0081 1.8E-07 56.9 4.3 27 82-108 98-124 (433)
491 PRK11034 clpA ATP-dependent Cl 96.0 0.0069 1.5E-07 61.4 4.0 28 86-113 490-517 (758)
492 cd03233 ABC_PDR_domain1 The pl 96.0 0.0064 1.4E-07 51.6 3.3 28 81-108 30-57 (202)
493 PRK09354 recA recombinase A; P 96.0 0.031 6.7E-07 51.5 7.9 38 81-118 57-99 (349)
494 PF01078 Mg_chelatase: Magnesi 96.0 0.0074 1.6E-07 51.3 3.6 26 83-108 21-46 (206)
495 PRK11264 putative amino-acid A 96.0 0.0069 1.5E-07 52.9 3.6 28 81-108 26-53 (250)
496 PRK11124 artP arginine transpo 96.0 0.0069 1.5E-07 52.7 3.5 28 81-108 25-52 (242)
497 cd03214 ABC_Iron-Siderophores_ 95.9 0.0075 1.6E-07 50.1 3.6 28 81-108 22-49 (180)
498 TIGR03771 anch_rpt_ABC anchore 95.9 0.0071 1.5E-07 52.1 3.5 26 83-108 5-30 (223)
499 cd03216 ABC_Carb_Monos_I This 95.9 0.0074 1.6E-07 49.4 3.4 27 81-107 23-49 (163)
500 PRK11889 flhF flagellar biosyn 95.9 0.0079 1.7E-07 56.2 3.9 26 83-108 240-265 (436)
No 1
>PLN02674 adenylate kinase
Probab=100.00 E-value=6.5e-37 Score=265.80 Aligned_cols=197 Identities=36% Similarity=0.663 Sum_probs=181.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
.+.|+|.|+|||||+|+|+.|+++||++|+++++++++++..+++.|..+++++..|.++|++.+..++.+++.+..+ .
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~-~ 109 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSC-Q 109 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCc-C
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999988765 5
Q ss_pred CeEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----hhhc
Q 023307 164 NGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLT 235 (284)
Q Consensus 164 ~g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~~l~ 235 (284)
+|||+||||++..|++.|+. .+..++.||+|+++.+++++|+.+|..|+.+|+.||..|.||..++.+ .++.
T Consensus 110 ~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g~~L~ 189 (244)
T PLN02674 110 KGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTGEPLI 189 (244)
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccCCccc
Confidence 89999999999999998765 357899999999999999999999999999999999999999876654 3688
Q ss_pred ccCCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccceec
Q 023307 236 KRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCFH 281 (284)
Q Consensus 236 ~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~~ 281 (284)
+|.||.++.+++||+.|+++..++++||++ .++.|||+++.++|+.
T Consensus 190 ~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~ 237 (244)
T PLN02674 190 QRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTA 237 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence 899999999999999999999999999987 4889999998877654
No 2
>PLN02459 probable adenylate kinase
Probab=100.00 E-value=1.5e-34 Score=252.13 Aligned_cols=197 Identities=35% Similarity=0.564 Sum_probs=177.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC-C
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD-S 161 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~-~ 161 (284)
+++.|+|.|+|||||||+|+.|+++||+.|+++++++++++..+++.+..+++++.+|.++|++++..++.++|.+.. .
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhccccc
Confidence 446789999999999999999999999999999999999999999999999999999999999999999999998752 3
Q ss_pred CCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccC-------------CCCCc-
Q 023307 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY-------------SPPET- 227 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~-------------~~p~~- 227 (284)
...||||||||++..|++.|.... .++.||+|+++.+++++|+.+|..|+.+|+.||..+ .||..
T Consensus 108 ~~~g~iLDGFPRt~~Qa~~Le~~~-~id~Vi~L~v~d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~~~~~p~~~ 186 (261)
T PLN02459 108 GESGFILDGFPRTVRQAEILEGVT-DIDLVVNLKLREEVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPGIVMPPLLP 186 (261)
T ss_pred CCceEEEeCCCCCHHHHHHHHhcC-CCCEEEEEECCHHHHHHHhhccccccccCccccccccccccccccccccCCCCCC
Confidence 468999999999999999998764 689999999999999999999999999999999853 44432
Q ss_pred -hHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhcc--ceEEeccCccccee
Q 023307 228 -DEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDV--TVEVCDMISLSFCF 280 (284)
Q Consensus 228 -~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~--~i~ID~~~~~~~v~ 280 (284)
+.+..++.+|.||.++.+++||+.|+++..++++||.+. ++.|||+++.++|.
T Consensus 187 ~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~ 242 (261)
T PLN02459 187 PPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETW 242 (261)
T ss_pred CcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHH
Confidence 234567889999999999999999999999999999875 88999998887654
No 3
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=100.00 E-value=2.1e-34 Score=247.12 Aligned_cols=195 Identities=49% Similarity=0.779 Sum_probs=178.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCeE
Q 023307 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 166 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g~ 166 (284)
|+|+|+|||||||+|+.|+++||++++++++++++.+..+++.+..+++++.+|.+++++++.+++.++|.+....+.+|
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~ 81 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF 81 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence 89999999999999999999999999999999999998888999999999999999999999999999998755557899
Q ss_pred EEeCcccCHHHHHHHHHcCC-CCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHH----hhhhcccCCCC
Q 023307 167 LLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEI----AARLTKRFDDT 241 (284)
Q Consensus 167 IlDg~p~~~~q~~~l~~~~~-~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~----~~~l~~r~~~~ 241 (284)
||||||++..|++.|.+... .++.+|+|++|.+++.+|+.+|..|+.+|+.||..+.+|...+. .+++..|.||+
T Consensus 82 ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~~~~l~~R~dD~ 161 (210)
T TIGR01351 82 ILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCTGELLIQREDDT 161 (210)
T ss_pred EEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCCccCCcCCccccccCCCccCCcCcccCCccccCCCCC
Confidence 99999999999999988765 68999999999999999999999999999999999999865442 35777899999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccceec
Q 023307 242 EEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCFH 281 (284)
Q Consensus 242 ~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~~ 281 (284)
++.+++|+..|+++..+++++|.+ .++.|||+.+.+.|..
T Consensus 162 ~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~ 203 (210)
T TIGR01351 162 EEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWK 203 (210)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHH
Confidence 999999999999999999999987 5999999998877653
No 4
>PRK14526 adenylate kinase; Provisional
Probab=100.00 E-value=5e-34 Score=244.16 Aligned_cols=193 Identities=30% Similarity=0.529 Sum_probs=176.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCe
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g 165 (284)
.|+|+|+|||||||+|+.|++.+++.++++++++++.+..+++.+..+++++..|.+++++.+.+++.++|..... .++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~-~~g 80 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKN-NDN 80 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccc-cCc
Confidence 5889999999999999999999999999999999999988899999999999999999999999999999987655 689
Q ss_pred EEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----hhhcccCCCC
Q 023307 166 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFDDT 241 (284)
Q Consensus 166 ~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~~l~~r~~~~ 241 (284)
|||||||++..|++.|.... ....+|+|+++++++.+|+.+|..|+.+|+.||..|.||..++.| .++.+|.||+
T Consensus 81 ~ilDGfPR~~~Qa~~l~~~~-~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~R~DD~ 159 (211)
T PRK14526 81 FILDGFPRNINQAKALDKFL-PNIKIINFLIDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCKGDLYQRKDDK 159 (211)
T ss_pred EEEECCCCCHHHHHHHHHhc-CCCEEEEEECCHHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCCCeeeccCCCC
Confidence 99999999999999998753 234688899999999999999999999999999999999876654 5678899999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 242 EEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 242 ~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
++.+++||+.|+++..+++++|.. .++.|||+++.++|+
T Consensus 160 ~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~ 200 (211)
T PRK14526 160 EESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVK 200 (211)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 999999999999999999999986 488999999987765
No 5
>PRK00279 adk adenylate kinase; Reviewed
Probab=100.00 E-value=2.6e-33 Score=241.16 Aligned_cols=196 Identities=45% Similarity=0.817 Sum_probs=177.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
++|+|.|+|||||||+|+.|+++||+.++++++++++.+..+++.+..+++++.+|..++++.+..++.+++.+..+ ..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~-~~ 79 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDC-KN 79 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCc-cC
Confidence 36999999999999999999999999999999999999998889999999999999999999999999999987665 45
Q ss_pred eEEEeCcccCHHHHHHHH----HcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhh----hhcc
Q 023307 165 GWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA----RLTK 236 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~----~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~----~l~~ 236 (284)
+|||||||++..|++.|. ..+..++.+|+|+++.+++.+|+.+|..++.+|..||..+.||..++.+. ++..
T Consensus 80 g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~~l~~ 159 (215)
T PRK00279 80 GFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVCGEELIQ 159 (215)
T ss_pred CEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCCCCcccC
Confidence 999999999999998884 34567889999999999999999999999999999999999997766553 4778
Q ss_pred cCCCCHHHHHHHHHHHHHhHHHHHHHhhcc--ceEEeccCcccceec
Q 023307 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYEDV--TVEVCDMISLSFCFH 281 (284)
Q Consensus 237 r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~--~i~ID~~~~~~~v~~ 281 (284)
|.||+++.+++|+..|++++.++.++|.+. ++.|||+.+.++|+.
T Consensus 160 r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~ 206 (215)
T PRK00279 160 RADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFA 206 (215)
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHH
Confidence 999999999999999999999999999875 999999998876653
No 6
>PRK14529 adenylate kinase; Provisional
Probab=100.00 E-value=3e-33 Score=240.20 Aligned_cols=193 Identities=36% Similarity=0.556 Sum_probs=169.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCe
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g 165 (284)
.|+|.|+|||||||+|+.|+++|++.++++++++++.+..+++.+..+++++.+|.+++++++..++.++|.+.. .+|
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~--~~g 79 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDG--KNG 79 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccC--CCc
Confidence 699999999999999999999999999999999999988899999999999999999999999999999998765 689
Q ss_pred EEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeec-cCCCCCchH-H----hhhhc
Q 023307 166 WLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHV-KYSPPETDE-I----AARLT 235 (284)
Q Consensus 166 ~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~-~~~~p~~~~-~----~~~l~ 235 (284)
|||||||++..|++.|.. .+..++.+|+|+++.+++.+|+..|+.|+.+|..|+. .+.||..+. . ...+.
T Consensus 80 ~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~~~~~l~ 159 (223)
T PRK14529 80 WLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRVCGGELS 159 (223)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCccccccCCcccccccCCCcccCCcCcCcCCccc
Confidence 999999999999998764 4678999999999999999999999999998776555 444554322 2 25678
Q ss_pred ccCCCC-HHHHHHHHHHHHHh---HHHHHHHhhc-------cceEEeccCccccee
Q 023307 236 KRFDDT-EEKVKLRLKTHHHN---VEAVLSLYED-------VTVEVCDMISLSFCF 280 (284)
Q Consensus 236 ~r~~~~-~~~i~~rl~~~~~~---~~~~~~~y~~-------~~i~ID~~~~~~~v~ 280 (284)
+|.||+ ++.+++||+.|+++ ..++++||.+ .++.|||+++.++|.
T Consensus 160 ~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~ 215 (223)
T PRK14529 160 TRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIK 215 (223)
T ss_pred cCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHH
Confidence 899996 78999999999998 4578899984 599999999887664
No 7
>PTZ00088 adenylate kinase 1; Provisional
Probab=100.00 E-value=1.5e-32 Score=237.54 Aligned_cols=198 Identities=34% Similarity=0.600 Sum_probs=173.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCC-CC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP-DS 161 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~-~~ 161 (284)
.++.|+|+|+|||||||+|+.|+++||++++++|+++++.+..+++.+..+++++.+|.+++++.+..++.+++.+. ..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ 84 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDD 84 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccc
Confidence 45679999999999999999999999999999999999999888899999999999999999999999999999873 33
Q ss_pred CCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccC-------CCCCc-h---HH
Q 023307 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKY-------SPPET-D---EI 230 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~-------~~p~~-~---~~ 230 (284)
...+|||||||++..|++.|.+.. .++.+|+|+++.+++++|+.+|+.|+.+|+.||..+ .||.. + +.
T Consensus 85 ~~~g~iLDGfPRt~~Qa~~l~~~~-~~~~vi~l~~~~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~~~~~~c~~ 163 (229)
T PTZ00088 85 CFKGFILDGFPRNLKQCKELGKIT-NIDLFVNIYLPRNILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPILPPADCEG 163 (229)
T ss_pred cCceEEEecCCCCHHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHcCcCCCccCCcceecccccccccCCCCCCCCcccc
Confidence 468999999999999999988764 789999999999999999999999999999999963 23321 1 11
Q ss_pred h---hhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhcc---ceEE---eccCcccceec
Q 023307 231 A---ARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDV---TVEV---CDMISLSFCFH 281 (284)
Q Consensus 231 ~---~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~---~i~I---D~~~~~~~v~~ 281 (284)
+ .++..|.||+++.+++||+.|+++..+++++|++. ++.| ||+++.+.|..
T Consensus 164 ~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~ 223 (229)
T PTZ00088 164 CKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYR 223 (229)
T ss_pred cCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHH
Confidence 2 26788999999999999999999999999999864 5556 79888876654
No 8
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-32 Score=223.85 Aligned_cols=179 Identities=40% Similarity=0.677 Sum_probs=163.5
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHc-CCcchHHHHHHHHcCCCcChHHHHHHHHHHhcC
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ 158 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~ 158 (284)
....+++|+|.|+|||||.|+|..++++|++.|+|++|++|++... +++.|..+++++.+|..+|.+++..++++++.+
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS 83 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999999988 999999999999999999999999999999988
Q ss_pred CCCCCCeEEEeCcccCHHHHHHHHHcCC-CCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhccc
Q 023307 159 PDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR 237 (284)
Q Consensus 159 ~~~~~~g~IlDg~p~~~~q~~~l~~~~~-~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r 237 (284)
... .++++|||||++.+|+..|+.... .+++++|++|+.|++++|+..|+. ...|
T Consensus 84 ~~~-~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q-----------------------~~~R 139 (195)
T KOG3079|consen 84 SGD-SNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQ-----------------------SNSR 139 (195)
T ss_pred cCC-CCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcc-----------------------cCCC
Confidence 654 345999999999999999998654 699999999999999999999974 1237
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccceecc
Q 023307 238 FDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCFHL 282 (284)
Q Consensus 238 ~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~~~ 282 (284)
.||+.+.+++|++.|++...++++||+. .+..||++.+.+.|++-
T Consensus 140 ~DDn~esikkR~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~ 186 (195)
T KOG3079|consen 140 SDDNEESIKKRLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEE 186 (195)
T ss_pred CCCchHHHHHHHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHH
Confidence 7899999999999999999999999998 68899999999888763
No 9
>PRK14530 adenylate kinase; Provisional
Probab=100.00 E-value=1.3e-31 Score=230.59 Aligned_cols=192 Identities=40% Similarity=0.670 Sum_probs=168.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHH-----HcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI-----AAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ 158 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~ 158 (284)
.+.|+|+|+|||||||+|+.|+++||++++++++++++.. ..+...+. ..+++..|..++++....++...+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~-~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDT-PGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHH-HHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 3579999999999999999999999999999999999876 23344443 56678899999999888888887754
Q ss_pred CCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhh----hh
Q 023307 159 PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA----RL 234 (284)
Q Consensus 159 ~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~----~l 234 (284)
..+||+||||++..|++.|.... .++.+|+|+++.+++++|+.+|..++.+|..|+..+.||..++.++ ++
T Consensus 82 ----~~~~IldG~pr~~~q~~~l~~~~-~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~rl 156 (215)
T PRK14530 82 ----ADGFVLDGYPRNLEQAEYLESIT-DLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGGEL 156 (215)
T ss_pred ----CCCEEEcCCCCCHHHHHHHHHhc-CCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCCcc
Confidence 46899999999999999887643 5899999999999999999999999999999999999998887766 88
Q ss_pred cccCCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccceec
Q 023307 235 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCFH 281 (284)
Q Consensus 235 ~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~~ 281 (284)
..|.+|+++.+++|+..|++++.+++++|++ .++.|||+++.+.|+.
T Consensus 157 ~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~ 205 (215)
T PRK14530 157 IQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWA 205 (215)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHH
Confidence 8999999999999999999999999999987 5889999998876643
No 10
>PLN02842 nucleotide kinase
Probab=100.00 E-value=7.2e-32 Score=253.68 Aligned_cols=193 Identities=63% Similarity=1.022 Sum_probs=181.9
Q ss_pred EEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCeEE
Q 023307 88 MISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWL 167 (284)
Q Consensus 88 ~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g~I 167 (284)
+|+|+|||||||+|++|+++|++.+++++++++.++..+++.|..+++++.+|..++++.+..++.+++.......++||
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999987655567899
Q ss_pred EeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCCHHHHHH
Q 023307 168 LDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKL 247 (284)
Q Consensus 168 lDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~ 247 (284)
|||||++..|++.|...+..|+++|+|+++++++++|+.+|..|+.+|..||..+.||..++++.++..|.||+++.+++
T Consensus 81 LDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~Ikk 160 (505)
T PLN02842 81 LDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKVKA 160 (505)
T ss_pred EeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHHHH
Confidence 99999999999999888888999999999999999999999999999999999999998888888899999999999999
Q ss_pred HHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 248 RLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 248 rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
||+.|+++..+++++|.+.++.|||+.+.++|+
T Consensus 161 RL~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVf 193 (505)
T PLN02842 161 RLQIYKKNAEAILSTYSDIMVKIDGNRPKEVVF 193 (505)
T ss_pred HHHHHHHHhhhHHHhcCcEEEEEECCCCHHHHH
Confidence 999999999999999999999999999887665
No 11
>PRK13808 adenylate kinase; Provisional
Probab=99.97 E-value=3e-30 Score=232.46 Aligned_cols=178 Identities=36% Similarity=0.627 Sum_probs=156.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
+.|+|+|||||||||+|+.|++.||+++++++|++++.+..+++.+..+.+++..|.++|++++..++.++|.+..+ ..
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~-~~ 79 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDA-AN 79 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc-cC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999988765 67
Q ss_pred eEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCC
Q 023307 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~ 240 (284)
||||||||++..|++.|+. .+..+|++|+|++|++++++|+..|..+... .....|.|+
T Consensus 80 G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~-----------------rg~~~R~DD 142 (333)
T PRK13808 80 GFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRA-----------------RGEEVRADD 142 (333)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccc-----------------cCCccCCCC
Confidence 9999999999999998764 4568999999999999999999998532100 001246788
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 241 ~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
+.+.+.+|+..|+++..+++++|++ .++.||++.++++|+
T Consensus 143 ~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~ 184 (333)
T PRK13808 143 TPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVT 184 (333)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHH
Confidence 8999999999999999999999987 589999999976654
No 12
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.97 E-value=9.7e-30 Score=214.80 Aligned_cols=189 Identities=45% Similarity=0.794 Sum_probs=169.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCe
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g 165 (284)
+|+|+|+|||||||+|+.|+++||+.++++++++++.+..+.+.+..+.+++.+|..++++.+..++..++.... .+.+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~-~~~~ 79 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPD-CKKG 79 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhccc-ccCC
Confidence 389999999999999999999999999999999999988888889999999999999999999999999887654 3678
Q ss_pred EEEeCcccCHHHHHHHHHcCC---CCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCCH
Q 023307 166 WLLDGYPRSLSQATALKKYGF---QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242 (284)
Q Consensus 166 ~IlDg~p~~~~q~~~l~~~~~---~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~ 242 (284)
||+||||++..|++.|.+... .++.+|+|+++.+++.+|+.+|..++.+|..|+. +.......++..+.+|.+
T Consensus 80 ~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~----~~~~~~~~~l~~r~dd~~ 155 (194)
T cd01428 80 FILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRICPVSGRVYHL----GKDDVTGEPLSQRSDDNE 155 (194)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCCcCCcCCc----CCCcccCCccccCCCCCH
Confidence 999999999999999988654 7999999999999999999999999999999998 222334566777888999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccce
Q 023307 243 EKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFC 279 (284)
Q Consensus 243 ~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v 279 (284)
+.+++|+..|++++.++.++|.+ .++.|||+.+.++|
T Consensus 156 ~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~v 194 (194)
T cd01428 156 ETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDEV 194 (194)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCcC
Confidence 99999999999999999999984 58899999887764
No 13
>PRK14528 adenylate kinase; Provisional
Probab=99.97 E-value=2.7e-29 Score=211.42 Aligned_cols=172 Identities=36% Similarity=0.609 Sum_probs=155.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
+.|+|+|+|||||||+|+.|+++||+++++++++++..+..+++.+..+..++..|..++++.+..++.+++.+..+ ..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~-~~ 80 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADC-KN 80 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCc-cC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999987765 57
Q ss_pred eEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCC
Q 023307 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~ 240 (284)
+|||||||++..|++.|.+ .+..++.+|+|++|.+++++|+..|.. ..++.||
T Consensus 81 g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~-----------------------~~gr~dd 137 (186)
T PRK14528 81 GFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE-----------------------IEGRADD 137 (186)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc-----------------------ccCCCCC
Confidence 9999999999999998775 346799999999999999999999963 1346688
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 241 TEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 241 ~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
+++.+.+|+..|+++..+++++|+. +++.|||+++.++|.
T Consensus 138 ~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~ 179 (186)
T PRK14528 138 NEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVT 179 (186)
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence 9999999999999999999999986 599999999887664
No 14
>PRK14531 adenylate kinase; Provisional
Probab=99.97 E-value=6.7e-29 Score=208.55 Aligned_cols=167 Identities=35% Similarity=0.600 Sum_probs=149.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
+.|+|+|+|||||||+|+.|+++||++++++++++++.+..+++.+..+++++..|..++++.+..++.+++.... ++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~--~~ 80 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALN--SG 80 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcc--CC
Confidence 4799999999999999999999999999999999999999899999999999999999999999999988886642 57
Q ss_pred eEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCC
Q 023307 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~ 240 (284)
+|||||||++..|++.|.. .+..++.+|+|++|++++.+|+..|+ +.||
T Consensus 81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~---------------------------r~dD 133 (183)
T PRK14531 81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG---------------------------RADD 133 (183)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC---------------------------CCCC
Confidence 8999999999999987765 34568899999999999999999985 3567
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHhhcc--ceEEeccCccccee
Q 023307 241 TEEKVKLRLKTHHHNVEAVLSLYEDV--TVEVCDMISLSFCF 280 (284)
Q Consensus 241 ~~~~i~~rl~~~~~~~~~~~~~y~~~--~i~ID~~~~~~~v~ 280 (284)
+++.+.+|+..|++...+++++|++. ++.|||+.+.+.|.
T Consensus 134 ~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~ 175 (183)
T PRK14531 134 NEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAIT 175 (183)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 88899999999999999999999864 89999998887664
No 15
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.4e-29 Score=215.71 Aligned_cols=191 Identities=44% Similarity=0.797 Sum_probs=176.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
++..++|.|+||+||+|+|.+|++.|++.|++++|++|+.+..+++.+...++++++|.+++|++++.++...+....+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~- 92 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRC- 92 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccccc-
Confidence 6788999999999999999999999999999999999999999999999999999999999999999966667766644
Q ss_pred CCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCc---hHHh-hhhcccC
Q 023307 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET---DEIA-ARLTKRF 238 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~---~~~~-~~l~~r~ 238 (284)
.++|++||||++..|++.+...+..++.||.|.+|.+.+.+|+..|..|+.+|+.||..|.||.. +++. +.|.+|.
T Consensus 93 ~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitgepL~qr~ 172 (235)
T KOG3078|consen 93 QKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVPEEVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITGEPLIQRE 172 (235)
T ss_pred ccccccCCCCcchHHHHHHHHccCCcceEEEecCCHHHHHHHHhcccccCcccceecccccCCccccccccccChhhcCc
Confidence 68999999999999999999989999999999999999999999999999999999999999988 5665 4499999
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHhhcc--ceEEeccC
Q 023307 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDV--TVEVCDMI 274 (284)
Q Consensus 239 ~~~~~~i~~rl~~~~~~~~~~~~~y~~~--~i~ID~~~ 274 (284)
+|+++.++.||..|+++..++++||... ++.++|..
T Consensus 173 dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~ 210 (235)
T KOG3078|consen 173 DDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK 210 (235)
T ss_pred cccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc
Confidence 9999999999999999999999999865 66777776
No 16
>PRK14532 adenylate kinase; Provisional
Probab=99.96 E-value=2.3e-28 Score=205.97 Aligned_cols=171 Identities=39% Similarity=0.641 Sum_probs=151.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCe
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g 165 (284)
.|+|.|+|||||||+|+.|++++|+.++++|+++++.+..+++.+..+++++..|..++++.+..++.+.+..... +.|
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~g 80 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEA-AGG 80 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc-cCc
Confidence 5899999999999999999999999999999999999988889999999999999999999999999998877654 789
Q ss_pred EEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCC
Q 023307 166 WLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT 241 (284)
Q Consensus 166 ~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~ 241 (284)
||+||||++..|++.+.+ .+..++.+|+|++|++++.+|+.+|..+ ..+.++.
T Consensus 81 ~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~-----------------------~~r~dd~ 137 (188)
T PRK14532 81 AIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEE-----------------------QGRPDDN 137 (188)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCc-----------------------CCCCCCC
Confidence 999999999999987653 4678999999999999999999998521 2356778
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 242 EEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 242 ~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
.+.+.+|+..|+.+..++.++|++ .++.|||+.+.++|.
T Consensus 138 ~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~ 178 (188)
T PRK14532 138 PEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVA 178 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 889999999999999999999975 488999988877654
No 17
>PRK14527 adenylate kinase; Provisional
Probab=99.96 E-value=3.6e-28 Score=205.42 Aligned_cols=175 Identities=34% Similarity=0.589 Sum_probs=155.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
.++++|+|+|+|||||||+|+.|+++||+.+++.+++++.....+++.+..+.+++..|..++++.+..++.+.+....+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~ 83 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP 83 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC
Confidence 45689999999999999999999999999999999999999888888999999999999999999999999998877544
Q ss_pred CCCeEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhccc
Q 023307 162 QENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKR 237 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r 237 (284)
.+||+||||++..|++.+.. .+..++.+|+|+++.+++.+|+.+|.. ...+
T Consensus 84 --~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~-----------------------~~~r 138 (191)
T PRK14527 84 --VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR-----------------------QEGR 138 (191)
T ss_pred --CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc-----------------------cCCC
Confidence 57999999999999887654 456788999999999999999999963 1346
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccceec
Q 023307 238 FDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCFH 281 (284)
Q Consensus 238 ~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~~ 281 (284)
.+|+.+.+.+|++.|+++..+++++|++ .++.|||+++.++|+.
T Consensus 139 ~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~ 184 (191)
T PRK14527 139 SDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYA 184 (191)
T ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence 7788999999999999999999999986 4899999999887653
No 18
>PLN02200 adenylate kinase family protein
Probab=99.96 E-value=1.3e-27 Score=207.75 Aligned_cols=174 Identities=33% Similarity=0.647 Sum_probs=153.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
...+.+|+|+|+|||||||+|+.|++++|+.|++.++++++.+..+++.+..+.+.+..|..++++.+..++.+++....
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~ 119 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD 119 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence 34567999999999999999999999999999999999999998888889999999999999999999998888887543
Q ss_pred CCCCeEEEeCcccCHHHHHHHHHc-CCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCC
Q 023307 161 SQENGWLLDGYPRSLSQATALKKY-GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~~-~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~ 239 (284)
..+|||||||++..|+..|.+. +..++.+|+|+++++++.+|+.+|+. .+.+
T Consensus 120 --~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~-------------------------~r~d 172 (234)
T PLN02200 120 --NNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ-------------------------GRVD 172 (234)
T ss_pred --CCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC-------------------------CCCC
Confidence 4789999999999999888764 45799999999999999999999852 2456
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccceec
Q 023307 240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCFH 281 (284)
Q Consensus 240 ~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~~ 281 (284)
++.+.+++|++.|++...+++++|++ .++.|||+++.++|+.
T Consensus 173 d~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~ 216 (234)
T PLN02200 173 DNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFE 216 (234)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHH
Confidence 77899999999999999999999975 4899999998877653
No 19
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.96 E-value=1.3e-27 Score=200.18 Aligned_cols=170 Identities=34% Similarity=0.625 Sum_probs=149.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCe
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g 165 (284)
+|+|+|+|||||||+|+.|++++|+.+++++|++++.+..+++.+..+++++.+|..++++.+..++.+++.... +.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~--~~~ 78 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADG--SKK 78 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccC--CCc
Confidence 489999999999999999999999999999999999988888888889999999999999999999998887654 679
Q ss_pred EEEeCcccCHHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCCH
Q 023307 166 WLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242 (284)
Q Consensus 166 ~IlDg~p~~~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~ 242 (284)
|||||||++..|++.|.. .+..++.+|+|++|.+++.+|+..|... ..+.+++.
T Consensus 79 ~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~-----------------------~~r~dd~~ 135 (183)
T TIGR01359 79 FLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQS-----------------------SGRVDDNI 135 (183)
T ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCcc-----------------------CCCCCCCH
Confidence 999999999999887765 3357899999999999999999999631 13456778
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 243 EKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 243 ~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
+.+++|+..|.+...+++++|++ .++.||++++.++|+
T Consensus 136 e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~ 175 (183)
T TIGR01359 136 ESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVF 175 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence 99999999999999999999975 578999999887664
No 20
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.96 E-value=9.3e-28 Score=195.38 Aligned_cols=145 Identities=50% Similarity=0.882 Sum_probs=131.3
Q ss_pred EEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCeEEE
Q 023307 89 ISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGWLL 168 (284)
Q Consensus 89 I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g~Il 168 (284)
|.|||||||||+|+.|+++||+++|++++++++.+..+++.+..+++++.+|..+|++++.+++..+|.+. ...+||||
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~-~~~~g~il 79 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQP-PCNRGFIL 79 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSG-GTTTEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh-cccceeee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999887 44799999
Q ss_pred eCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCCHHH
Q 023307 169 DGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEK 244 (284)
Q Consensus 169 Dg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~ 244 (284)
||||++..|++.|.. .+..++.+|+|+++++++.+|+.+ ++.+.
T Consensus 80 dGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~--------------------------------d~~~~ 127 (151)
T PF00406_consen 80 DGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ--------------------------------DNEEV 127 (151)
T ss_dssp ESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT--------------------------------GSHHH
T ss_pred eeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc--------------------------------CCHHH
Confidence 999999999999998 788899999999999999999976 34778
Q ss_pred HHHHHHHHHHhHHHHHHHhhcc
Q 023307 245 VKLRLKTHHHNVEAVLSLYEDV 266 (284)
Q Consensus 245 i~~rl~~~~~~~~~~~~~y~~~ 266 (284)
+++|++.|+++..+++++|++.
T Consensus 128 i~~Rl~~y~~~~~~i~~~y~~~ 149 (151)
T PF00406_consen 128 IKKRLEEYRENTEPILDYYKEQ 149 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999863
No 21
>PRK02496 adk adenylate kinase; Provisional
Probab=99.96 E-value=3.5e-27 Score=198.13 Aligned_cols=169 Identities=37% Similarity=0.672 Sum_probs=150.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
++.|+|+|+|||||||+|+.|+++||++++++++++++.+..+++.+..+..++.+|..++++.+..++.+++.+..+ .
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~-~ 79 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDA-A 79 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCc-c
Confidence 367999999999999999999999999999999999999988888999999999999999999999999999987655 4
Q ss_pred CeEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCC
Q 023307 164 NGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (284)
Q Consensus 164 ~g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~ 239 (284)
.+||+||||++..|+..+.. .+..++.+|+|+++.+++.+|+..|+ +.+
T Consensus 80 ~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~---------------------------~~d 132 (184)
T PRK02496 80 NGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG---------------------------RKD 132 (184)
T ss_pred CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC---------------------------CCC
Confidence 79999999999999877764 34578999999999999999999984 235
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 240 ~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
+.++.+++|+..|+++..+++++|++ .++.|||+++.++|.
T Consensus 133 d~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~ 175 (184)
T PRK02496 133 DTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVT 175 (184)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 67889999999999999999999975 489999999987765
No 22
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.95 E-value=8.2e-27 Score=194.33 Aligned_cols=166 Identities=45% Similarity=0.753 Sum_probs=154.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
++|+|.|+|||||||+|+.|+++++++|+|++++++......++.+..++.++..|.+++++.+...+.+++.+.++..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~- 79 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA- 79 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC-
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999987755
Q ss_pred eEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCC
Q 023307 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~ 240 (284)
++|+||||++..|++.+++ .+...+.++.++++.+.+++|+..|.. |.||
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~--------------------------r~dd 133 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV--------------------------REDD 133 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc--------------------------cccC
Confidence 9999999999999998885 367889999999999999999999952 5689
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 241 ~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
.++.+++|+..|++...++.++|. +.|||..+.++|.
T Consensus 134 ~~~~~~~R~~~y~~~~~pli~~y~---~~id~~~~i~~v~ 170 (178)
T COG0563 134 NEETVKKRLKVYHEQTAPLIEYYS---VTIDGSGEIEEVL 170 (178)
T ss_pred CHHHHHHHHHHHHhcccchhhhhe---eeccCCCCHHHHH
Confidence 999999999999999999999998 9999999987664
No 23
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.95 E-value=5.1e-26 Score=191.01 Aligned_cols=175 Identities=39% Similarity=0.642 Sum_probs=152.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
+.++|+|+|+|||||||+|+.|++++|+.+++.+++++..+..+.+.+..++..+.++...+++.+...+.+.+......
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCc
Confidence 34689999999999999999999999999999999999987767777888888888899999988888888888776666
Q ss_pred CCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCCH
Q 023307 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~ 242 (284)
+.+||+||||++..|++.+......++.+|||+++.+++.+|+..|+. ...+.++..
T Consensus 82 ~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~-----------------------~~~r~d~~~ 138 (188)
T TIGR01360 82 SKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE-----------------------TSGRVDDNE 138 (188)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc-----------------------cCCCCCCCH
Confidence 889999999999999999887666799999999999999999999852 123567778
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 243 EKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 243 ~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
+.+.+|+..|+++..++.++|.. .++.||++.+.++|.
T Consensus 139 ~~~~~r~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~ 178 (188)
T TIGR01360 139 KTIKKRLETYYKATEPVIAYYETKGKLRKINAEGTVDDVF 178 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence 89999999999999999999965 688999998876654
No 24
>PRK01184 hypothetical protein; Provisional
Probab=99.67 E-value=5.1e-15 Score=124.10 Aligned_cols=119 Identities=24% Similarity=0.354 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHc-CCc-----chHHHHHHHHcCCCcChHHHHHHHHHHhc
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSE-----NGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~-~~~-----~~~~~~~~~~~g~~~~~~~~~~~l~~~i~ 157 (284)
+++|+|+|+|||||||+++ +++++|+++++++|++++.+.. +.+ .+....+... .+ ....+...+...+.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~--~~-~~~~~~~~~~~~i~ 76 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRK--EL-GMDAVAKRTVPKIR 76 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHH--HH-ChHHHHHHHHHHHH
Confidence 4689999999999999997 6789999999999999998642 221 2332322222 11 12333344444554
Q ss_pred CCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 158 QPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 158 ~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
. ..+..+|+||+ +...+++.+.+.......+|+|+|+.+++.+|+..|+
T Consensus 77 ~--~~~~~vvidg~-r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~ 125 (184)
T PRK01184 77 E--KGDEVVVIDGV-RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRG 125 (184)
T ss_pred h--cCCCcEEEeCC-CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcC
Confidence 4 23578999999 7888887776654346689999999999999999885
No 25
>PRK13973 thymidylate kinase; Provisional
Probab=99.67 E-value=6.8e-15 Score=126.41 Aligned_cols=167 Identities=21% Similarity=0.292 Sum_probs=102.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeeh--------hHHHHHHHHcC--CcchHHHHHHHHcCCCcChHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY---GLVHIAA--------GDLLRAEIAAG--SENGKRAKEHMEKGQLVPDEIVV 149 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~--------ddlir~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~ 149 (284)
++++|+|.|++||||||+++.|++++ |+.++.+ ++++++.+..+ ...+.....++-.+ ...+.+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a--~r~~~~~ 79 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAA--ARDDHVE 79 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHH--HHHHHHH
Confidence 46899999999999999999999999 8877765 66676655432 11222222222111 0112222
Q ss_pred HHHHHHhcCCCCCCCeEEEeCcc----------c--CHHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCC
Q 023307 150 TMVKERLSQPDSQENGWLLDGYP----------R--SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVT 214 (284)
Q Consensus 150 ~~l~~~i~~~~~~~~g~IlDg~p----------~--~~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~ 214 (284)
..+...+. .+..+|.|.|- + ..+++..+.. ....||++|||++|++++.+|+.+|+....
T Consensus 80 ~~i~~~l~----~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~- 154 (213)
T PRK13973 80 EVIRPALA----RGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDT- 154 (213)
T ss_pred HHHHHHHH----CCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCc-
Confidence 23333343 35677888643 2 1234444443 235799999999999999999999853100
Q ss_pred CceeeccCCCCCchHHhhhhcccCC-CCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 215 GKIYHVKYSPPETDEIAARLTKRFD-DTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 215 g~~~~~~~~~p~~~~~~~~l~~r~~-~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
..+.+ +..+..+++.+.|.+ +.++|+..++.||++++.++|.
T Consensus 155 --------------------~~~~e~~~~~~~~~~~~~y~~----l~~~~~~~~~~Ida~~~~e~V~ 197 (213)
T PRK13973 155 --------------------PDRFEKEDLAFHEKRREAFLQ----IAAQEPERCVVIDATASPEAVA 197 (213)
T ss_pred --------------------cCchhhchHHHHHHHHHHHHH----HHHhCCCcEEEEcCCCCHHHHH
Confidence 01122 233444555555544 4456776788999999987654
No 26
>PRK13949 shikimate kinase; Provisional
Probab=99.63 E-value=1.5e-14 Score=119.92 Aligned_cols=109 Identities=18% Similarity=0.282 Sum_probs=72.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHH-cCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
..|+|+|+|||||||+++.|++.++++++++|+++..... ..+.+++. .|.....+....++.+ +.. .
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~------~~~~~~~~~~g~~~fr~~e~~~l~~-l~~----~ 70 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH------KTVGDIFAERGEAVFRELERNMLHE-VAE----F 70 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC------ccHHHHHHHhCHHHHHHHHHHHHHH-HHh----C
Confidence 4799999999999999999999999999999998876432 22223332 2221111222222222 221 2
Q ss_pred CeEEE-eC--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 164 NGWLL-DG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 164 ~g~Il-Dg--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
.++|+ +| .+....+.+.+.+ .+++|||+++.+++++|+..+
T Consensus 71 ~~~vis~Ggg~~~~~~~~~~l~~----~~~vi~L~~~~~~~~~Ri~~~ 114 (169)
T PRK13949 71 EDVVISTGGGAPCFFDNMELMNA----SGTTVYLKVSPEVLFVRLRLA 114 (169)
T ss_pred CCEEEEcCCcccCCHHHHHHHHh----CCeEEEEECCHHHHHHHHhcC
Confidence 34555 54 5556666677764 457999999999999999853
No 27
>PRK06217 hypothetical protein; Validated
Probab=99.61 E-value=1.7e-14 Score=121.01 Aligned_cols=106 Identities=25% Similarity=0.397 Sum_probs=76.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
++.|+|+|++||||||+|+.|++.+|++++++|+++... .+.+. +...+.+.....+.+.+.. +
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~~----~ 64 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLP--TDPPF----------TTKRPPEERLRLLLEDLRP----R 64 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeecc--CCCCc----------cccCCHHHHHHHHHHHHhc----C
Confidence 367999999999999999999999999999999988641 11111 1112334444555555532 4
Q ss_pred CeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 164 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 164 ~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
.+|||||++... .+.+. ..++.+|||++|.+++++|+..|..
T Consensus 65 ~~~vi~G~~~~~--~~~~~---~~~d~~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 65 EGWVLSGSALGW--GDPLE---PLFDLVVFLTIPPELRLERLRLREF 106 (183)
T ss_pred CCEEEEccHHHH--HHHHH---hhCCEEEEEECCHHHHHHHHHcCcc
Confidence 689999976543 22222 2478899999999999999999964
No 28
>PRK03839 putative kinase; Provisional
Probab=99.60 E-value=1.8e-14 Score=120.45 Aligned_cols=100 Identities=25% Similarity=0.326 Sum_probs=70.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCe
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g 165 (284)
+|+|+|+|||||||+++.|+++++++++++|+++++. ..+..+... + +...+.+...+.+... +.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-----~~~~~~~~~---~-----~~~~~~l~~~~~~~~~-~~~ 67 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-----GIGEEKDDE---M-----EIDFDKLAYFIEEEFK-EKN 67 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-----CCcccCChh---h-----hcCHHHHHHHHHHhcc-CCC
Confidence 6999999999999999999999999999999998652 111111110 1 1112333333333222 467
Q ss_pred EEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 166 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 166 ~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
||+||+.... ..++.+|+|+++.+++.+|+..|+
T Consensus 68 vIidG~~~~l----------~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 68 VVLDGHLSHL----------LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred EEEEeccccc----------cCCCEEEEEECCHHHHHHHHHHcC
Confidence 9999974321 257899999999999999999885
No 29
>PRK08356 hypothetical protein; Provisional
Probab=99.59 E-value=1.5e-14 Score=122.61 Aligned_cols=117 Identities=20% Similarity=0.334 Sum_probs=83.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcC-Ccc------hHH----HHHHHHcCCCcCh----HHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG-SEN------GKR----AKEHMEKGQLVPD----EIV 148 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~-~~~------~~~----~~~~~~~g~~~~~----~~~ 148 (284)
.++|+|+|+|||||||+|+.|+ ++|+.++++++.++...... .+. +.. ..++++.|..+++ +.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~ 83 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDIL 83 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHH
Confidence 3689999999999999999996 58999999998655432221 110 001 1234444444442 445
Q ss_pred HHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 149 VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 149 ~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+.+.+.+.. ...+++||+ ++..|++.|... ...+|||+++.+++.+|+..|+
T Consensus 84 ~~~~~~~~~~----~~~ividG~-r~~~q~~~l~~~---~~~vi~l~~~~~~~~~Rl~~R~ 136 (195)
T PRK08356 84 IRLAVDKKRN----CKNIAIDGV-RSRGEVEAIKRM---GGKVIYVEAKPEIRFERLRRRG 136 (195)
T ss_pred HHHHHHHhcc----CCeEEEcCc-CCHHHHHHHHhc---CCEEEEEECCHHHHHHHHHhcC
Confidence 5555555532 236999999 999999998863 3479999999999999999986
No 30
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.58 E-value=2.7e-14 Score=117.00 Aligned_cols=111 Identities=24% Similarity=0.328 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHhcCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
.+.|+|+|++||||||+++.||+.++++++|+|.++.+.. ++.+.+++.. |..-....-.+.+.+.+..
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~------g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~---- 71 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT------GMSIAEIFEEEGEEGFRRLETEVLKELLEE---- 71 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH------CcCHHHHHHHHhHHHHHHHHHHHHHHHhhc----
Confidence 3579999999999999999999999999999999998843 3455555543 3211111112222222222
Q ss_pred CCeEEEeC--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 163 ENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 163 ~~g~IlDg--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
+..+|--| .....+....+...+ .+|||+++.+++++|+...
T Consensus 72 ~~~ViaTGGG~v~~~enr~~l~~~g----~vv~L~~~~e~l~~Rl~~~ 115 (172)
T COG0703 72 DNAVIATGGGAVLSEENRNLLKKRG----IVVYLDAPFETLYERLQRD 115 (172)
T ss_pred CCeEEECCCccccCHHHHHHHHhCC----eEEEEeCCHHHHHHHhccc
Confidence 22344333 223334445566444 7999999999999999843
No 31
>PRK13974 thymidylate kinase; Provisional
Probab=99.58 E-value=2.4e-14 Score=122.93 Aligned_cols=166 Identities=18% Similarity=0.235 Sum_probs=103.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHHHcCCcchHHHHHHHHc--CCCcChHHHHHHH------
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLLRAEIAAGSENGKRAKEHMEK--GQLVPDEIVVTMV------ 152 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is--~ddlir~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l------ 152 (284)
.+.+|+|.|++||||||+++.|++.+.....- -.+.+......+++.|+.+++++.. +...++.....++
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987421100 0011111122356777888887752 2223333222222
Q ss_pred ---HHHhcCCCCCCCeEEEe----------CcccCH--HHHHHHH---HcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCC
Q 023307 153 ---KERLSQPDSQENGWLLD----------GYPRSL--SQATALK---KYGFQPDLFILLEVPEDTLVERVVGRRLDPVT 214 (284)
Q Consensus 153 ---~~~i~~~~~~~~g~IlD----------g~p~~~--~q~~~l~---~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~ 214 (284)
.+.+......+..+|.| |+++.. +++..+. ..+..|+++|||++|++++.+|+..|.
T Consensus 82 ~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~----- 156 (212)
T PRK13974 82 QHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRK----- 156 (212)
T ss_pred HHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcc-----
Confidence 12222222334445555 455532 2344443 345679999999999999999998773
Q ss_pred CceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 215 GKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 215 g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
+| .++.+...|++...+.+++|.+ .++.|||+++.++|.
T Consensus 157 ------------------------dD---~~e~~~~~y~~~v~~~y~~y~~~~~~~~Ida~~~~eeV~ 197 (212)
T PRK13974 157 ------------------------PD---RIEAEGIEFLERVAEGFALIAEERNWKVISADQSIETIS 197 (212)
T ss_pred ------------------------cC---chhhhhHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHH
Confidence 12 2455677788888888888865 478999998887664
No 32
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.57 E-value=3.7e-14 Score=120.74 Aligned_cols=167 Identities=22% Similarity=0.341 Sum_probs=108.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcC-CCc-ChHH-------HH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG-QLV-PDEI-------VV 149 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g-~~~-~~~~-------~~ 149 (284)
+++++|+|.|..||||||+++.|++.+ |+.++- .....+++.++.+++++.++ ..+ +... ..
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~------trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~ 74 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVL------TREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRA 74 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE------EeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999988 433331 11233466677777766654 222 2111 12
Q ss_pred HHHHHHhcCCCCCCCeEEEeCccc------------CHHHHHHHHHcC---CCCcEEEEEEcCHHHHHHHHHcCCCCCCC
Q 023307 150 TMVKERLSQPDSQENGWLLDGYPR------------SLSQATALKKYG---FQPDLFILLEVPEDTLVERVVGRRLDPVT 214 (284)
Q Consensus 150 ~~l~~~i~~~~~~~~g~IlDg~p~------------~~~q~~~l~~~~---~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~ 214 (284)
+.+.+.+......+..||+|.|-. ..+.+..+.+.. ..||+++||++++++.++|+.+|+..
T Consensus 75 ~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~--- 151 (208)
T COG0125 75 QHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL--- 151 (208)
T ss_pred HHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc---
Confidence 223444555555578899996432 123444444433 48999999999999999999999631
Q ss_pred CceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 215 GKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 215 g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
..+++. ...+-++..++.|..+.+.+++.+++|||+.+.+.|.
T Consensus 152 --------------------~~r~E~---~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~ 194 (208)
T COG0125 152 --------------------RDRFEK---EDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVH 194 (208)
T ss_pred --------------------cchhhh---HHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHH
Confidence 011111 1113455557788888888888899999999876654
No 33
>PRK08118 topology modulation protein; Reviewed
Probab=99.56 E-value=3.9e-14 Score=117.13 Aligned_cols=98 Identities=29% Similarity=0.470 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
+.|+|+|+|||||||+|+.|++.++++++++|+++... .+...+++.+..++.+.+. ..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~----------------~w~~~~~~~~~~~~~~~~~-----~~ 60 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP----------------NWEGVPKEEQITVQNELVK-----ED 60 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc----------------CCcCCCHHHHHHHHHHHhc-----CC
Confidence 57999999999999999999999999999999887530 1223344444555555443 35
Q ss_pred eEEEeC-cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 165 GWLLDG-YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 165 g~IlDg-~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+||+|| |+.... ..+. .+|.+|||++|.++|..|+.+|.
T Consensus 61 ~wVidG~~~~~~~--~~l~----~~d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 61 EWIIDGNYGGTMD--IRLN----AADTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred CEEEeCCcchHHH--HHHH----hCCEEEEEeCCHHHHHHHHHHHH
Confidence 799999 443332 1222 48999999999999999999885
No 34
>PRK00625 shikimate kinase; Provisional
Probab=99.55 E-value=2.3e-13 Score=113.11 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=71.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
+.|+|+|+|||||||+++.|+++++++++++|+++++..... ....+.++++... ++.+.+.-...+..... ..
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~--~~~~i~eif~~~G---e~~fr~~E~~~l~~l~~-~~ 74 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGA--LYSSPKEIYQAYG---EEGFCREEFLALTSLPV-IP 74 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCC--CCCCHHHHHHHHC---HHHHHHHHHHHHHHhcc-CC
Confidence 369999999999999999999999999999999998754321 1112333333211 11122211122222222 33
Q ss_pred eEEEeC--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 165 GWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 165 g~IlDg--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+|..| .....+..+.+. ....+|||+++.+++.+|+..|.
T Consensus 75 ~VIs~GGg~~~~~e~~~~l~----~~~~Vv~L~~~~e~l~~Rl~~R~ 117 (173)
T PRK00625 75 SIVALGGGTLMIEPSYAHIR----NRGLLVLLSLPIATIYQRLQKRG 117 (173)
T ss_pred eEEECCCCccCCHHHHHHHh----cCCEEEEEECCHHHHHHHHhcCC
Confidence 445444 223333444443 24579999999999999999885
No 35
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.55 E-value=5e-14 Score=126.94 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=101.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~-~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
+++|++.|+|||||||+|+.|++++ ++.+++.|++.+. +......+.. .+... .+..+...+...+......
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~-~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~l~~ 74 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQS-LFGHGEWGEY--KFTKE----KEDLVTKAQEAAALAALKS 74 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHH-hcCCCccccc--ccChH----HHHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999 8999998775443 3221111100 00000 0111222222222222223
Q ss_pred CCeEEEeCcccCHHHHHHHHHc---CCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCC
Q 023307 163 ENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~---~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~ 239 (284)
+..+|+|+++....+.+.+... ......+|+|+++.+++.+|+..|+.+ .
T Consensus 75 g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~---------------------------~ 127 (300)
T PHA02530 75 GKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGER---------------------------A 127 (300)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcC---------------------------C
Confidence 6789999988877766655432 112334799999999999999999531 1
Q ss_pred CCHHHHH---HHHHHHHHhHHHHHHHhhc--cceEEeccCcccc
Q 023307 240 DTEEKVK---LRLKTHHHNVEAVLSLYED--VTVEVCDMISLSF 278 (284)
Q Consensus 240 ~~~~~i~---~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~ 278 (284)
...+.++ +|++.|...+.+++..|.. .++.+|.++....
T Consensus 128 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 128 VPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred CCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 2344444 7888888888888777754 3566666665543
No 36
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.54 E-value=6.9e-14 Score=110.66 Aligned_cols=109 Identities=24% Similarity=0.349 Sum_probs=79.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc--CCCcChHHHHHHHHHHhcCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK--GQLVPDEIVVTMVKERLSQP 159 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~i~~~ 159 (284)
+..+.|+|+|.||+||||+|..||+.+|+.+|.+++++++.-- ...+-+. -..+.++.+.+.+...+.+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l--------~~gyDE~y~c~i~DEdkv~D~Le~~m~~- 75 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNL--------YEGYDEEYKCHILDEDKVLDELEPLMIE- 75 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcc--------hhcccccccCccccHHHHHHHHHHHHhc-
Confidence 3457899999999999999999999999999999999987311 1111111 1234566667777776654
Q ss_pred CCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 160 DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 160 ~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
.|.|+|-+.+.+-- + .-.|+|++|.||.+++++|+..|+.
T Consensus 76 ----Gg~IVDyHgCd~Fp-----e--rwfdlVvVLr~~~s~LY~RL~sRgY 115 (176)
T KOG3347|consen 76 ----GGNIVDYHGCDFFP-----E--RWFDLVVVLRTPNSVLYDRLKSRGY 115 (176)
T ss_pred ----CCcEEeecccCccc-----h--hheeEEEEEecCchHHHHHHHHcCC
Confidence 78899963332200 0 1267999999999999999999985
No 37
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.54 E-value=4.8e-13 Score=107.45 Aligned_cols=110 Identities=30% Similarity=0.378 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcC--hHHHHHHHHHHhcCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP--DEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~l~~~i~~~~~~ 162 (284)
++|.|.|+|||||||+|+.||+++|+++++.++++|+.... .|..+.++-.-++.-| |..+.+...+...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e---~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~----- 72 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE---RGMSLEEFSRYAEEDPEIDKEIDRRQKELAK----- 72 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH---cCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-----
Confidence 47999999999999999999999999999999999997663 3333333332222212 1222222222222
Q ss_pred CCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
..++|++|.- +-++.. ...++.|||.+|.++..+|+..|.
T Consensus 73 ~~nvVlegrL-----A~Wi~k--~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 73 EGNVVLEGRL-----AGWIVR--EYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred cCCeEEhhhh-----HHHHhc--cccceEEEEeCcHHHHHHHHHHhc
Confidence 4789999852 222332 358999999999999999999994
No 38
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.53 E-value=1.5e-13 Score=116.49 Aligned_cols=118 Identities=23% Similarity=0.300 Sum_probs=79.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh-------------
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD------------- 145 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~-----~~~------------- 145 (284)
+.+|+|+|++||||||+++.|++ +|++++++|.+.++.+..+.+....+.+.+..+.+ +..
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 36899999999999999999988 99999999999999988777666666655533222 111
Q ss_pred -----HHHHHHHHHH----hcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 146 -----EIVVTMVKER----LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 146 -----~~~~~~l~~~----i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
..++..+.+. +.... ...-+|+|.- .-.+ . .+ ...+|.+|++++|.+++.+|+.+|+
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~~~-~~~~vv~e~p-ll~e-~-~~---~~~~D~vi~V~a~~e~~~~Rl~~R~ 146 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQEAE-SSPYVVLDIP-LLFE-N-GL---EKLVDRVLVVDAPPETQLERLMARD 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc-cCCEEEEEeh-Hhhc-C-Cc---hhhCCeEEEEECCHHHHHHHHHHcC
Confidence 1222222222 22211 1245677752 1111 0 01 1247899999999999999999984
No 39
>PRK08233 hypothetical protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=115.21 Aligned_cols=116 Identities=17% Similarity=0.210 Sum_probs=64.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG-LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~-~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
++++|+|.|+|||||||+|+.|++.++ ..++..|..... .....+.++...+... +......+...+.....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 74 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFD------NCPEDICKWIDKGANY-SEWVLTPLIKDIQELIA 74 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcc------cCchhhhhhhhccCCh-hhhhhHHHHHHHHHHHc
Confidence 458999999999999999999999996 333333322111 0011222233333222 22222333333332221
Q ss_pred C-CCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 162 Q-ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 162 ~-~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
. ...+|+..+|..... ..+. ..+|.+|||++|.+++++|+..|.
T Consensus 75 ~~~~~~vivd~~~~~~~-~~~~---~~~d~~i~l~~~~~~~~~R~~~R~ 119 (182)
T PRK08233 75 KSNVDYIIVDYPFAYLN-SEMR---QFIDVTIFIDTPLDIAMARRILRD 119 (182)
T ss_pred CCCceEEEEeeehhhcc-HHHH---HHcCEEEEEcCCHHHHHHHHHHHH
Confidence 1 124444334433211 1122 247899999999999999988874
No 40
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.50 E-value=4.4e-13 Score=113.63 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCC------cCh-------------
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL------VPD------------- 145 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~------~~~------------- 145 (284)
++|+|+|++||||||+++.|++.+|++++|.|++.++.+..+.+....+.+.+....+ +..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 5799999999999999999999899999999999999998888777777766543222 110
Q ss_pred -----HHHHHHHH----HHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 146 -----EIVVTMVK----ERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 146 -----~~~~~~l~----~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
++++..+. ..+... .....+|+|. |...+. .+. ..+|.+|+++||.+++.+|+..|+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~-~~~~~vv~e~-pll~E~--~~~---~~~D~ii~V~a~~e~r~~Rl~~R~ 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQL-KSNPIVVLVI-PLLFEA--KLT---DLCSEIWVVDCSPEQQLQRLIKRD 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhc-CCCCEEEEEe-HHhcCc--chH---hCCCEEEEEECCHHHHHHHHHHcC
Confidence 11222222 223222 1134566664 111100 111 157999999999999999999985
No 41
>PRK04040 adenylate kinase; Provisional
Probab=99.50 E-value=7e-13 Score=111.70 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=74.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHHHcCC-c-chHHHHHHHHcCCCcChHHHHHHHHHHhcCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGS-E-NGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~--~~~~is~ddlir~~~~~~~-~-~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~ 159 (284)
+++|+|+|+|||||||+++.|++++ ++.+++.++++++...... . ....++. ........+..+..+.+.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~----l~~~~~~~~~~~a~~~i~~~ 77 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRK----LPPEEQKELQREAAERIAEM 77 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhh----CChhhhHHHHHHHHHHHHHh
Confidence 5789999999999999999999999 8999999999887654321 1 1112211 11111112233344444443
Q ss_pred CCCCCeEEEeCcccCHH--------HHHHHHHcCCCCcEEEEEEcCHHHHHHHHHc
Q 023307 160 DSQENGWLLDGYPRSLS--------QATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (284)
Q Consensus 160 ~~~~~g~IlDg~p~~~~--------q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 207 (284)
. .++.+|+||+..... ....+. ...|+.+|+|.++++++++|...
T Consensus 78 ~-~~~~~~~~~h~~i~~~~g~~~~~~~~~~~--~l~pd~ii~l~a~p~~i~~Rrl~ 130 (188)
T PRK04040 78 A-GEGPVIVDTHATIKTPAGYLPGLPEWVLE--ELNPDVIVLIEADPDEILMRRLR 130 (188)
T ss_pred h-cCCCEEEeeeeeeccCCCCcCCCCHHHHh--hcCCCEEEEEeCCHHHHHHHHhc
Confidence 2 245699998542110 111222 23689999999999999888875
No 42
>PRK13948 shikimate kinase; Provisional
Probab=99.50 E-value=5.1e-13 Score=111.82 Aligned_cols=112 Identities=13% Similarity=0.039 Sum_probs=70.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
..+..|+|+|++||||||+++.|++.+|+.++|+|.++++... ..+.+++.... +..+.++-.+.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g------~si~~if~~~G---e~~fR~~E~~~l~~l~~ 78 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG------KSIPEIFRHLG---EAYFRRCEAEVVRRLTR 78 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh------CCHHHHHHHhC---HHHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999999999999988877432 23333333211 12222222222222211
Q ss_pred CCCeEEEe--CcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHH
Q 023307 162 QENGWLLD--GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206 (284)
Q Consensus 162 ~~~g~IlD--g~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 206 (284)
....+|.- |.+...+....+.+ ...+|||+++.+++.+|+.
T Consensus 79 ~~~~VIa~GgG~v~~~~n~~~l~~----~g~vV~L~~~~e~l~~Rl~ 121 (182)
T PRK13948 79 LDYAVISLGGGTFMHEENRRKLLS----RGPVVVLWASPETIYERTR 121 (182)
T ss_pred cCCeEEECCCcEEcCHHHHHHHHc----CCeEEEEECCHHHHHHHhc
Confidence 12333332 23333344445553 3479999999999999994
No 43
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.49 E-value=9e-13 Score=111.01 Aligned_cols=162 Identities=20% Similarity=0.233 Sum_probs=88.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCC---CcChHH-------HHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ---LVPDEI-------VVTM 151 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~---~~~~~~-------~~~~ 151 (284)
++|+|.|++||||||+++.|++.+ |..++.+... .+...+..+++++.... ..+... ....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 74 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP------GGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQH 74 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC------CCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHH
Confidence 479999999999999999999988 5555443210 01122333333333221 111110 0111
Q ss_pred HHHHhcCCCCCCCeEEEeCcccC------------HHHHHHH---HHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCc
Q 023307 152 VKERLSQPDSQENGWLLDGYPRS------------LSQATAL---KKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (284)
Q Consensus 152 l~~~i~~~~~~~~g~IlDg~p~~------------~~q~~~l---~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (284)
+.+.+......+..+|+|.+... ..++..+ ......|+.+|||+++++++.+|+.+|+..
T Consensus 75 ~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~----- 149 (200)
T cd01672 75 VEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRD----- 149 (200)
T ss_pred HHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc-----
Confidence 12222222234678999953311 1222222 223357999999999999999999998631
Q ss_pred eeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCcccce
Q 023307 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFC 279 (284)
Q Consensus 217 ~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v 279 (284)
+...+.....++.....+..+...+...++.||++.+.+++
T Consensus 150 ----------------------~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i 190 (200)
T cd01672 150 ----------------------DRDEQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEV 190 (200)
T ss_pred ----------------------chhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 00001112223333344445554444457899998886554
No 44
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.49 E-value=3e-12 Score=105.58 Aligned_cols=113 Identities=25% Similarity=0.306 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
++|+|+|++||||||+|+.|++.+|+++++.+++++............+........ .+...+...+......+.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~ 75 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENP-----EIDKKIDRRIHEIALKEK 75 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCc-----HHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999999999988887765432111111112211111 112222222222221246
Q ss_pred eEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+|+||....+ +. ...++++|+|++|.+++.+|+..|.
T Consensus 76 ~~Vi~g~~~~~-----~~--~~~~d~~v~v~a~~~~r~~R~~~R~ 113 (171)
T TIGR02173 76 NVVLESRLAGW-----IV--REYADVKIWLKAPLEVRARRIAKRE 113 (171)
T ss_pred CEEEEecccce-----ee--cCCcCEEEEEECCHHHHHHHHHHcc
Confidence 78999853221 11 1246789999999999999999985
No 45
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.49 E-value=1.4e-13 Score=110.30 Aligned_cols=114 Identities=25% Similarity=0.354 Sum_probs=72.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcch---HHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENG---KRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
+|++.|+|||||||+++.|++.++..+++.|++.........+.. ....+.. ...+...+...+. .
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~----~ 69 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERA-------YQILNAAIRKALR----N 69 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHH-------HHHHHHHHHHHHH----T
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHH-------HHHHHHHHHHHHH----c
Confidence 589999999999999999999999999998887765432111110 0000000 1122233333443 3
Q ss_pred CCeEEEeCcccCHHHHH---HHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 163 ENGWLLDGYPRSLSQAT---ALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~---~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
+..+|+|.......+.. .+.........+|+|+++.+++.+|+..|..
T Consensus 70 g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 70 GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence 67899997444433333 3333333567899999999999999999963
No 46
>PLN02924 thymidylate kinase
Probab=99.48 E-value=4e-13 Score=115.85 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=76.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHH-H------HH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVT-M------VK 153 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~------l~ 153 (284)
++++++|+|.|++||||||+++.|++.++...+.+ ...++ ...++..|..+++++..+..+......- . ..
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~e-p~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~~ 90 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRF-PDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEKR 90 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeC-CCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999985543332 11111 1124556666776665443222211100 0 01
Q ss_pred HHhcCCCCCCCeEEEeCccc-----------CHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHH
Q 023307 154 ERLSQPDSQENGWLLDGYPR-----------SLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206 (284)
Q Consensus 154 ~~i~~~~~~~~g~IlDg~p~-----------~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 206 (284)
..|......+..+|+|.|.. ..+.+..+......||++|||++|++++.+|..
T Consensus 91 ~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~ 154 (220)
T PLN02924 91 SLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGG 154 (220)
T ss_pred HHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhc
Confidence 22333334478899997543 123333444445679999999999999999854
No 47
>PRK13947 shikimate kinase; Provisional
Probab=99.48 E-value=7.6e-13 Score=109.44 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHhcCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
..|+|+|+|||||||+|+.|++.+|+++++.|.+++... + ..+.+++.. |...-.+. ...+.+.+.. .
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~--g----~~~~~~~~~~ge~~~~~~-e~~~~~~l~~----~ 70 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT--G----MTVAEIFEKDGEVRFRSE-EKLLVKKLAR----L 70 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc--C----CcHHHHHHHhChHHHHHH-HHHHHHHHhh----c
Confidence 369999999999999999999999999999998876642 2 222222222 21100111 1112222221 1
Q ss_pred CeEEEe-C--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 164 NGWLLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 164 ~g~IlD-g--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
..+|+. | ..........+.+. ..+|||+++.+.+.+|+..|.
T Consensus 71 ~~~vi~~g~g~vl~~~~~~~l~~~----~~vv~L~~~~~~l~~Rl~~r~ 115 (171)
T PRK13947 71 KNLVIATGGGVVLNPENVVQLRKN----GVVICLKARPEVILRRVGKKK 115 (171)
T ss_pred CCeEEECCCCCcCCHHHHHHHHhC----CEEEEEECCHHHHHHHhcCCC
Confidence 233332 2 22333455555543 479999999999999998774
No 48
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.48 E-value=4.3e-13 Score=113.93 Aligned_cols=165 Identities=21% Similarity=0.226 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC---CcEeehhHHHHHHHHcCCcchHHHHHHHHc--CCCcChHHH-------HH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEK--GQLVPDEIV-------VT 150 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~---~~~is~ddlir~~~~~~~~~~~~~~~~~~~--g~~~~~~~~-------~~ 150 (284)
++++|+|.|++||||||+++.|+++++ ..++-... ..+...+..+++.+.. ....+.... ..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 75 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTRE------PGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQ 75 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeC------CCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999872 22221100 0123344555555542 122222111 11
Q ss_pred HHHHHhcCCCCCCCeEEEeCcccC------------HHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCC
Q 023307 151 MVKERLSQPDSQENGWLLDGYPRS------------LSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (284)
Q Consensus 151 ~l~~~i~~~~~~~~g~IlDg~p~~------------~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (284)
.+...+......+..+|+|.+... ..+...+.. ....||++|||++|++++.+|+.+|+..
T Consensus 76 ~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~---- 151 (205)
T PRK00698 76 HLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL---- 151 (205)
T ss_pred HHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc----
Confidence 112222222234678999953221 122223332 2256999999999999999999999520
Q ss_pred ceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 216 ~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
+...+.....+...++.+..+.+.+...++.||++.+.+++.
T Consensus 152 -----------------------~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~ 193 (205)
T PRK00698 152 -----------------------DRIEQEGLDFFERVREGYLELAEKEPERIVVIDASQSLEEVH 193 (205)
T ss_pred -----------------------chhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHH
Confidence 000011112222223445555555555688999998876553
No 49
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.48 E-value=5.9e-13 Score=113.29 Aligned_cols=116 Identities=26% Similarity=0.389 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChH------------------
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE------------------ 146 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~------------------ 146 (284)
++|+|+|++||||||+++.|++ +|+++++.|++.++.+..+.+....+.+.+..+.+.++.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5899999999999999999987 899999999999999988877777777666554433211
Q ss_pred -----HHHHHH----HHHhcCCCCCC-CeEEEeCcccCHHHHHHHHHcC--CCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 147 -----IVVTMV----KERLSQPDSQE-NGWLLDGYPRSLSQATALKKYG--FQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 147 -----~~~~~l----~~~i~~~~~~~-~g~IlDg~p~~~~q~~~l~~~~--~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.++..+ ...+......+ ..++++. |. +.+.+ ..+|.+|++++|.+++++|+..|+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~-pl-------L~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~ 147 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDM-PL-------LVEKGLDRKMDLVVVVDVDVEERVRRLVEKR 147 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEe-ec-------eeEcCccccCCeEEEEECCHHHHHHHHHHcC
Confidence 111111 11111111111 2344443 21 11111 257999999999999999999884
No 50
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.47 E-value=2.7e-12 Score=106.28 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=69.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
..|+|+|++||||||+++.|++.+|+++++.|.++.... +... .+++... .++.+.+.-.+.+... ....
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~--g~~~----~~~~~~~---g~~~~~~~e~~~~~~~-~~~~ 72 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS--NMTV----AEIVERE---GWAGFRARESAALEAV-TAPS 72 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh--CCCH----HHHHHHH---CHHHHHHHHHHHHHHh-cCCC
Confidence 468999999999999999999999999999998887643 2222 2222211 1222222222222221 1122
Q ss_pred eEEEeC--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 165 GWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 165 g~IlDg--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+|-.| +.......+.+. ..+++|||+++++++.+|+..|.
T Consensus 73 ~vi~~ggg~vl~~~~~~~l~----~~~~~v~l~~~~~~~~~Rl~~r~ 115 (171)
T PRK03731 73 TVIATGGGIILTEENRHFMR----NNGIVIYLCAPVSVLANRLEANP 115 (171)
T ss_pred eEEECCCCccCCHHHHHHHH----hCCEEEEEECCHHHHHHHHcccc
Confidence 333333 233334444444 35579999999999999998873
No 51
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.46 E-value=1.6e-12 Score=109.74 Aligned_cols=120 Identities=21% Similarity=0.314 Sum_probs=67.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC---cEeehhHHHHHHHHcCCcchHHHHHHHHcCC--CcCh---HHH-----HH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ--LVPD---EIV-----VT 150 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~---~~is~ddlir~~~~~~~~~~~~~~~~~~~g~--~~~~---~~~-----~~ 150 (284)
+++|+|.|++||||||+++.|++.++. .++-+. ...+++.+..+++++..+. .... ..+ ..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~ 76 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR------EPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHE 76 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999999843 332110 0012233333434322111 1110 000 11
Q ss_pred HHHHHhcCCCCCCCeEEEeCcc----------cC--HHHHHHHHHcCC--CCcEEEEEEcCHHHHHHHHHcCC
Q 023307 151 MVKERLSQPDSQENGWLLDGYP----------RS--LSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 151 ~l~~~i~~~~~~~~g~IlDg~p----------~~--~~q~~~l~~~~~--~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+...+......+..+|+|.+. +. .+++..+..... .|+++|||+++++++++|+..|+
T Consensus 77 ~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~ 149 (195)
T TIGR00041 77 HLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRG 149 (195)
T ss_pred HHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 1222222222235678889532 11 123333333222 39999999999999999999985
No 52
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.46 E-value=9.3e-13 Score=111.66 Aligned_cols=118 Identities=25% Similarity=0.343 Sum_probs=76.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcCh------------------
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD------------------ 145 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~------------------ 145 (284)
+++|.|+|.+||||||+|+.+++ +|++++++|+++++.+.++.+....+.+.+.....-++
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 57999999999999999999998 99999999999999988876665555554432221111
Q ss_pred -----HHHHHHHHHHhc-CCCCCCCeEEEeCcccCHHHHHHHHHcCC--CCcEEEEEEcCHHHHHHHHHcCC
Q 023307 146 -----EIVVTMVKERLS-QPDSQENGWLLDGYPRSLSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 146 -----~~~~~~l~~~i~-~~~~~~~g~IlDg~p~~~~q~~~l~~~~~--~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+.+.++...+. .......++++-..| .|.+.+. .+|.||+++||.++.++|+++|+
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~eip-------lL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~ 145 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVLEIP-------LLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD 145 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEEEch-------HHHhccccccCCEEEEEECCHHHHHHHHHhcC
Confidence 112222222221 000111213332222 3333321 27899999999999999999997
No 53
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.46 E-value=1.6e-12 Score=107.41 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=68.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
.++.|+|+|+|||||||+|+.|++.+|+.+++.|++++.... .+....+.+ .|. ..+.+.....+.+....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g--~~~~~~~~~---~g~----~~~~~~~~~~~~~l~~~ 73 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG--KSIPEIFEE---EGE----AAFRELEEEVLAELLAR 73 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC--CCHHHHHHH---HCH----HHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999999999999988766432 222221111 121 11111111112111111
Q ss_pred CCeEEEeCc--ccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 163 ENGWLLDGY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 163 ~~g~IlDg~--p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
...+|..|. .........+. ....+|||++|.+.+.+|+..|.
T Consensus 74 ~~~vi~~g~~~~~~~~~r~~l~----~~~~~v~l~~~~~~~~~R~~~~~ 118 (175)
T PRK00131 74 HNLVISTGGGAVLREENRALLR----ERGTVVYLDASFEELLRRLRRDR 118 (175)
T ss_pred CCCEEEeCCCEeecHHHHHHHH----hCCEEEEEECCHHHHHHHhcCCC
Confidence 223444331 11222233343 24589999999999999998864
No 54
>PRK13946 shikimate kinase; Provisional
Probab=99.45 E-value=2.8e-12 Score=107.68 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=71.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
.++.|+|+|++||||||+++.|++++|+++++.|.++.... +......+..+ |.....+...+.+...+ ..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~--g~~~~e~~~~~---ge~~~~~~e~~~l~~l~----~~ 79 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA--RMTIAEIFAAY---GEPEFRDLERRVIARLL----KG 79 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh--CCCHHHHHHHH---CHHHHHHHHHHHHHHHH----hc
Confidence 45689999999999999999999999999999998766543 22222222221 21100111122222222 22
Q ss_pred CCeEEEeCc--ccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 163 ENGWLLDGY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 163 ~~g~IlDg~--p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+..+|..|. .......+.+.. ..++|||++|.+++.+|+..|.
T Consensus 80 ~~~Vi~~ggg~~~~~~~r~~l~~----~~~~v~L~a~~e~~~~Rl~~r~ 124 (184)
T PRK13946 80 GPLVLATGGGAFMNEETRAAIAE----KGISVWLKADLDVLWERVSRRD 124 (184)
T ss_pred CCeEEECCCCCcCCHHHHHHHHc----CCEEEEEECCHHHHHHHhcCCC
Confidence 344555542 233344444443 4578999999999999999875
No 55
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.45 E-value=3.2e-12 Score=106.26 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
...|+|+|++||||||+++.|++.+++.+++.|..+.... +.+....++.. |...-.+.-.+.+.+ +.. .
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~--g~~i~~~~~~~---g~~~fr~~e~~~l~~-l~~----~ 73 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADIGWVFDVE---GEEGFRDREEKVINE-LTE----K 73 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh--CcCHhHHHHHh---CHHHHHHHHHHHHHH-HHh----C
Confidence 4579999999999999999999999999999998766533 22222222211 210000111122222 221 2
Q ss_pred CeEEEe-C--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCC
Q 023307 164 NGWLLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (284)
Q Consensus 164 ~g~IlD-g--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~ 240 (284)
..+|+. | ..........+.. .+.+|||+++.+++.+|+..+...|. .. +.
T Consensus 74 ~~~vi~~ggg~v~~~~~~~~l~~----~~~vv~L~~~~e~~~~Ri~~~~~rP~---------------------~~--~~ 126 (172)
T PRK05057 74 QGIVLATGGGSVKSRETRNRLSA----RGVVVYLETTIEKQLARTQRDKKRPL---------------------LQ--VD 126 (172)
T ss_pred CCEEEEcCCchhCCHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCCCCCC---------------------CC--CC
Confidence 344444 2 2223333345553 45899999999999999986542111 11 11
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCcccceec
Q 023307 241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCFH 281 (284)
Q Consensus 241 ~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~~ 281 (284)
.. .+.+..+.+...++++.+.+.++.+++....+.++.
T Consensus 127 ~~---~~~~~~l~~~R~~~Y~~~Ad~~idt~~~s~~ei~~~ 164 (172)
T PRK05057 127 DP---REVLEALANERNPLYEEIADVTIRTDDQSAKVVANQ 164 (172)
T ss_pred CH---HHHHHHHHHHHHHHHHhhCCEEEECCCCCHHHHHHH
Confidence 11 223555566667777666665665555555555443
No 56
>PRK06762 hypothetical protein; Provisional
Probab=99.45 E-value=8e-13 Score=108.89 Aligned_cols=111 Identities=17% Similarity=0.208 Sum_probs=70.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~--~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
+++|+|+|+|||||||+|+.|++.+ ++.+++.|.+.+. +..... ..+. ...+.+...+...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~-l~~~~~---------~~~~-~~~~~~~~~~~~~~~---- 66 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRD-MLRVKD---------GPGN-LSIDLIEQLVRYGLG---- 66 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHH-hccccC---------CCCC-cCHHHHHHHHHHHHh----
Confidence 5789999999999999999999998 5677875554433 221100 0010 111222222222222
Q ss_pred CCCeEEEeCcccCH---HHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 162 QENGWLLDGYPRSL---SQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 162 ~~~g~IlDg~p~~~---~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+..+|+|+..... ..++.+......+..+|||++|.+++.+|...|.
T Consensus 67 ~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~ 117 (166)
T PRK06762 67 HCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRP 117 (166)
T ss_pred CCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccc
Confidence 35779999853222 2234444444457789999999999999999985
No 57
>PRK13975 thymidylate kinase; Provisional
Probab=99.44 E-value=1e-11 Score=104.93 Aligned_cols=116 Identities=23% Similarity=0.328 Sum_probs=66.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHH---H----HHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI---V----VTMVKERL 156 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~---~----~~~l~~~i 156 (284)
+++|+|.|++||||||+++.|+++++..+... ..+...+..+++++..+...+... + .+.+ +.+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~--------~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~-~~i 72 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCE--------PTDGKIGKLIREILSGSKCDKETLALLFAADRVEHV-KEI 72 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeEC--------CCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH-HHH
Confidence 36899999999999999999999998533210 011122333333333221111000 0 0111 112
Q ss_pred cCCCCCCCeEEEeCcccC-----------HHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 157 SQPDSQENGWLLDGYPRS-----------LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 157 ~~~~~~~~g~IlDg~p~~-----------~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
..... ...+|+|.|... ......+......|+++|||+++.+++.+|+..|+
T Consensus 73 ~~~~~-~~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~ 135 (196)
T PRK13975 73 EEDLK-KRDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD 135 (196)
T ss_pred HHHHc-CCEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC
Confidence 11111 257899975321 12222333334579999999999999999999884
No 58
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.44 E-value=2.3e-12 Score=104.79 Aligned_cols=105 Identities=27% Similarity=0.394 Sum_probs=69.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
|+|+|+|.||+||||+|++|+ ++|+.++++.+++.+.-- .....+ ......+..+.+...+...+ ...
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~-----~~~~de-~r~s~~vD~d~~~~~le~~~-----~~~ 68 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGL-----YTEYDE-LRKSVIVDVDKLRKRLEELL-----REG 68 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCC-----eeccCC-ccceEEeeHHHHHHHHHHHh-----ccC
Confidence 579999999999999999999 899999999888876310 000000 00011122222222333222 246
Q ss_pred eEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
+.|+|++...+ . ..+|+||+|.++++.+.+|+++|+.
T Consensus 69 ~~Ivd~H~~hl------~---~~~dlVvVLR~~p~~L~~RLk~RGy 105 (180)
T COG1936 69 SGIVDSHLSHL------L---PDCDLVVVLRADPEVLYERLKGRGY 105 (180)
T ss_pred CeEeechhhhc------C---CCCCEEEEEcCCHHHHHHHHHHcCC
Confidence 78999863222 1 1489999999999999999999985
No 59
>PLN02422 dephospho-CoA kinase
Probab=99.44 E-value=1.7e-12 Score=112.30 Aligned_cols=165 Identities=18% Similarity=0.177 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCC-----cC---------------
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VP--------------- 144 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~-----~~--------------- 144 (284)
++|+|+|++||||||+++.|+ ++|++++|+|++.++.+..+......+.+.+....+ +.
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 479999999999999999998 689999999999999998876655555554432221 11
Q ss_pred ---hHHHHHHHHHHhc----CCC-CCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCc
Q 023307 145 ---DEIVVTMVKERLS----QPD-SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (284)
Q Consensus 145 ---~~~~~~~l~~~i~----~~~-~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (284)
+++++..+...+. +.. .....+|+|. |--.+ . .....+|.+|+++||.++..+|+.+|+.......
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei-pLL~E-~----~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea 154 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI-PLLFE-T----KMDKWTKPVVVVWVDPETQLERLMARDGLSEEQA 154 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe-hhhhh-c----chhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence 1122333322221 111 1124566664 21111 0 0112589999999999999999999963221111
Q ss_pred eeeccCCCCCchHHh-hhhcccCCCCHHHHHHHHHHHHHhH
Q 023307 217 IYHVKYSPPETDEIA-ARLTKRFDDTEEKVKLRLKTHHHNV 256 (284)
Q Consensus 217 ~~~~~~~~p~~~~~~-~~l~~r~~~~~~~i~~rl~~~~~~~ 256 (284)
...+..+.|.++... .+.....+.+.+.+.+++....+.+
T Consensus 155 ~~Ri~~Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~~l 195 (232)
T PLN02422 155 RNRINAQMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLEKI 195 (232)
T ss_pred HHHHHHcCChhHHHhhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 122344444433322 2333444456666666666554443
No 60
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.43 E-value=1.3e-12 Score=111.95 Aligned_cols=120 Identities=17% Similarity=0.262 Sum_probs=72.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc--------CC-CcChH-------
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK--------GQ-LVPDE------- 146 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~--------g~-~~~~~------- 146 (284)
.+.+|.|+|++||||||+++.|.+ +|+++++.|.+.++.+..+......+...+.. |. .+...
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 347899999999999999999986 89999999999988766554333333322211 11 01101
Q ss_pred -----------HHH----HHHHHHhcCCCCCC-CeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 147 -----------IVV----TMVKERLSQPDSQE-NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 147 -----------~~~----~~l~~~i~~~~~~~-~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+++ ..+...+......+ ..+|+|+ |.-.+. .+ ...+|.+|++++|.+++.+|+.+|+
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~-pLL~e~--~~---~~~~d~ii~V~a~~e~~~~Rl~~R~ 155 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEA-AILFES--GG---DAGLDFIVVVAADTELRLERAVQRG 155 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEe-eeeeec--Cc---hhcCCeEEEEECCHHHHHHHHHHcC
Confidence 111 11222222221122 3344554 221110 01 1247999999999999999999995
No 61
>PRK04182 cytidylate kinase; Provisional
Probab=99.43 E-value=4.9e-12 Score=105.08 Aligned_cols=113 Identities=28% Similarity=0.414 Sum_probs=71.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
++|+|+|++||||||+|+.|++++|+++++++++++............+.+. +...+. +...+...+......+.
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~ 75 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKY---AEEDPE--IDKEIDRRQLEIAEKED 75 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHH---hhcCch--HHHHHHHHHHHHHhcCC
Confidence 4799999999999999999999999999999998887654321111112121 211111 11112222211111246
Q ss_pred eEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
++|++|.-..+ +.. ..++++|||++|.+++.+|+..|.
T Consensus 76 ~~Vi~g~~~~~-----~~~--~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 76 NVVLEGRLAGW-----MAK--DYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred CEEEEEeecce-----Eec--CCCCEEEEEECCHHHHHHHHHhcc
Confidence 78999832111 111 126789999999999999999884
No 62
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.43 E-value=4.3e-12 Score=106.08 Aligned_cols=117 Identities=23% Similarity=0.347 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCC-----cC----------------
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VP---------------- 144 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~-----~~---------------- 144 (284)
+|+|+|++||||||+++.|++ +|++++++|++.++.+..+......+.+.+....+ +.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999988 99999999999999988777766666665543221 11
Q ss_pred --hHHHHHHHHHHhcCC---CCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 145 --DEIVVTMVKERLSQP---DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 145 --~~~~~~~l~~~i~~~---~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+..++..+...+.+. .....-+|+|. |...+. .+ ...+|.+|++++|.++.++|+..|+
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~-plL~e~--~~---~~~~D~vv~V~a~~~~ri~Rl~~Rd 143 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDI-PLLFET--GL---EKLVDRVIVVDAPPEIQIERLMKRD 143 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEe-hHhhcC--Cc---HHhCCeEEEEECCHHHHHHHHHHcC
Confidence 122333333332211 11123456664 211110 01 1257899999999999999999985
No 63
>PLN02199 shikimate kinase
Probab=99.42 E-value=8.6e-12 Score=110.65 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=70.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHhcCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
....|+|+|++||||||+++.|++.+|++++|+|.++++... +.. +.+++.. | ++.+.+.-.+.+.+...
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~-G~s----I~eIf~~~G----E~~FR~~E~e~L~~L~~ 171 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN-GTS----VAEIFVHHG----ENFFRGKETDALKKLSS 171 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc-CCC----HHHHHHHhC----HHHHHHHHHHHHHHHHh
Confidence 356899999999999999999999999999999999988633 333 3333332 3 22222222222222221
Q ss_pred CCCeEEEeC--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHc
Q 023307 162 QENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (284)
Q Consensus 162 ~~~g~IlDg--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 207 (284)
....||--| ..........+. . ..+|||+++.+++.+|+..
T Consensus 172 ~~~~VIStGGG~V~~~~n~~~L~-~----G~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 172 RYQVVVSTGGGAVIRPINWKYMH-K----GISIWLDVPLEALAHRIAA 214 (303)
T ss_pred cCCEEEECCCcccCCHHHHHHHh-C----CeEEEEECCHHHHHHHHhh
Confidence 122333333 222223333343 2 4799999999999999985
No 64
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.41 E-value=2.5e-12 Score=108.31 Aligned_cols=117 Identities=25% Similarity=0.334 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc------CCCcCh--------------
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK------GQLVPD-------------- 145 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~------g~~~~~-------------- 145 (284)
+|+|+|++||||||+++.|++..+++++++|++.++.+..+.+....+.+.+.. |. +..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~-idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGE-LDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCC-CCHHHHHHHHhCCHHHH
Confidence 489999999999999999999877999999999999998877655555544321 21 111
Q ss_pred ----HH----HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 146 ----EI----VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 146 ----~~----~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.. +...+.+.+.+....+..+|++. |...+. .+ ...+|.+|+++++.+++.+|+..|+
T Consensus 80 ~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~-pll~e~--~~---~~~~D~vv~V~~~~~~~~~Rl~~R~ 145 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV-PLLFEN--KL---RSLCDRVIVVDVSPQLQLERLMQRD 145 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc-hHhhhC--Cc---HHhCCEEEEEECCHHHHHHHHHHcC
Confidence 01 11222333333222223566654 222111 11 1247899999999999999999985
No 65
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.41 E-value=1.5e-12 Score=108.73 Aligned_cols=117 Identities=24% Similarity=0.351 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh--------------
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD-------------- 145 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~-----~~~-------------- 145 (284)
++|.|+|+.||||||++++|++ +|++++++|.+.++.+..+.+....+.+.+....+ +..
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999987 99999999999999988877766666665543221 111
Q ss_pred ----HHHHHHH----HHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 146 ----EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 146 ----~~~~~~l----~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+++..+ .+.+..... ...+|+|. |.-.+. .+ ...+|.+|++.||.++..+|+.+|+
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~-~~~~v~e~-pLL~E~--~~---~~~~D~vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKS-EKVVVVEI-PLLFES--GL---EKLCDEVIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHS-TSEEEEE--TTTTTT--TG---GGGSSEEEEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccC-CCEEEEEc-chhhhh--hH---hhhhceEEEEECCHHHHHHHHHhhC
Confidence 1222332 223332221 25677775 211110 11 1248999999999999999999984
No 66
>PRK07261 topology modulation protein; Provisional
Probab=99.41 E-value=8.8e-13 Score=109.48 Aligned_cols=101 Identities=22% Similarity=0.285 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
+.|+|+|++||||||+|+.|++.+++++++.|.+... . .....+.+.+...+.+.+.+ .
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~-----~ 59 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ---P-------------NWQERDDDDMIADISNFLLK-----H 59 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec---c-------------ccccCCHHHHHHHHHHHHhC-----C
Confidence 3699999999999999999999999999998776421 0 01122334455555555533 3
Q ss_pred eEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
.||+||..........+. ..|.+|+|++|.++|+.|+.+|..
T Consensus 60 ~wIidg~~~~~~~~~~l~----~ad~vI~Ld~p~~~~~~R~lkR~~ 101 (171)
T PRK07261 60 DWIIDGNYSWCLYEERMQ----EADQIIFLNFSRFNCLYRAFKRYL 101 (171)
T ss_pred CEEEcCcchhhhHHHHHH----HCCEEEEEcCCHHHHHHHHHHHHH
Confidence 499999765533333444 478999999999999999998853
No 67
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.40 E-value=1.1e-11 Score=100.41 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=66.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCeE
Q 023307 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENGW 166 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g~ 166 (284)
|+|+|+|||||||+++.|++++|+.+++.|+++...... ... +++... .++.+.....+.+..... ..++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~--~~~----~~~~~~---~~~~~~~~e~~~~~~~~~-~~~~ 71 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGM--SIP----EIFAEE---GEEGFRELEREVLLLLLT-KENA 71 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCC--CHH----HHHHHH---CHHHHHHHHHHHHHHHhc-cCCc
Confidence 899999999999999999999999999999888765321 221 222111 112222221212222222 2345
Q ss_pred EEeC---cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 167 LLDG---YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 167 IlDg---~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
|+++ +.......+.+. ...++|||++|.+++.+|+..|.
T Consensus 72 vi~~g~~~i~~~~~~~~~~----~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 72 VIATGGGAVLREENRRLLL----ENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred EEECCCCccCcHHHHHHHH----cCCeEEEEeCCHHHHHHHhccCC
Confidence 5553 212222222223 35689999999999999998874
No 68
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.40 E-value=5.7e-12 Score=106.83 Aligned_cols=124 Identities=13% Similarity=0.126 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcch-HHHHHHHHcCCCcCh--------------HH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENG-KRAKEHMEKGQLVPD--------------EI 147 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~-~~~~~~~~~g~~~~~--------------~~ 147 (284)
.+++|+|.|.||+||||+|+.|++++|+.++..+|++++.+......+ ......++.|...++ +.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 567999999999999999999999999999999999999877533322 111111111111111 11
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEc-CHHHHHHHHHcCC
Q 023307 148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEV-PEDTLVERVVGRR 209 (284)
Q Consensus 148 ~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~-~~e~~~~Rl~~R~ 209 (284)
+...+...+......+..+|+|+........+..... ...++++.+ +++++.+|+..|.
T Consensus 82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~---~v~~i~l~v~d~e~lr~Rl~~R~ 141 (197)
T PRK12339 82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTN---NIRAFYLYIRDAELHRSRLADRI 141 (197)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhc---CeEEEEEEeCCHHHHHHHHHHHh
Confidence 1111222222233358899999854444444332222 234566655 6788889999996
No 69
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.40 E-value=6.8e-12 Score=106.71 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=94.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCC----CcCh-------------
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ----LVPD------------- 145 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~----~~~~------------- 145 (284)
.|.+|+|+|++||||||++++|++++|+++++.|.+.++.+.. ......+.+.+..+. .+..
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~-~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKK-PSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCc-hHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 3578999999999999999999999999999999999988764 222222332222111 1111
Q ss_pred -----HHHHHHHHHH----hcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCc
Q 023307 146 -----EIVVTMVKER----LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (284)
Q Consensus 146 -----~~~~~~l~~~----i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (284)
.+++..+... +... ...-+++|. |--.+. . + .....+|.+|++.||.++..+|+..|+.......
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~~~~--~~~~vv~ei-pLL~E~-~-~-~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a 157 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQVKES--DTVMTIVDI-PLLGPY-N-F-RHYDYLKKVIVIKADLETRIRRLMERDGKNRQQA 157 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhc--CCCeEEEEe-chhhhc-c-C-chhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHH
Confidence 1222233222 2221 123566765 211110 0 0 0012478999999999999999999864222222
Q ss_pred eeeccCCCCCchHHh-hhhcccCCC-CHHHHHHHHHHHHHh
Q 023307 217 IYHVKYSPPETDEIA-ARLTKRFDD-TEEKVKLRLKTHHHN 255 (284)
Q Consensus 217 ~~~~~~~~p~~~~~~-~~l~~r~~~-~~~~i~~rl~~~~~~ 255 (284)
...+..+.|.++... .+.....+. +.+.+++++....+.
T Consensus 158 ~~ri~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~ 198 (204)
T PRK14733 158 VAFINLQISDKEREKIADFVIDNTELTDQELESKLITTINE 198 (204)
T ss_pred HHHHHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHH
Confidence 222344555444332 223333344 566666666554443
No 70
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.38 E-value=4.7e-12 Score=122.80 Aligned_cols=118 Identities=20% Similarity=0.212 Sum_probs=72.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHhcCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQP 159 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i~~~ 159 (284)
+.+.+.|+|+|++||||||+++.|++++|++++|+|+.+.+.. |..+.+++.+ |.....+.-.+.+.+.+
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~------g~si~eif~~~Ge~~FR~~E~~~l~~~~--- 73 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI------GMSIPSYFEEYGEPAFREVEADVVADML--- 73 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH------CcCHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3455789999999999999999999999999999999988743 3445555432 32111121122222222
Q ss_pred CCCCCeEEEeC--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 160 DSQENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 160 ~~~~~g~IlDg--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
.....+|--| .+...+..+.+.+.......+|||+++.+++.+|+..+
T Consensus 74 -~~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~ 123 (542)
T PRK14021 74 -EDFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRG 123 (542)
T ss_pred -hcCCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCC
Confidence 1123333232 23333333333221112347999999999999999754
No 71
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.38 E-value=5e-12 Score=110.36 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=78.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcC-----CCcChH------------
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG-----QLVPDE------------ 146 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g-----~~~~~~------------ 146 (284)
+++|.|+|++||||||++++|.+.+|++++|+|.+.++.+.++......+.+.+... ..+...
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 368999999999999999999988999999999999999887766555555443221 111111
Q ss_pred ------HHHHHHH----HHhcCC---------CCC-CCeEEEeCcccCHHHHHHHHHcC---CCCcEEEEEEcCHHHHHH
Q 023307 147 ------IVVTMVK----ERLSQP---------DSQ-ENGWLLDGYPRSLSQATALKKYG---FQPDLFILLEVPEDTLVE 203 (284)
Q Consensus 147 ------~~~~~l~----~~i~~~---------~~~-~~g~IlDg~p~~~~q~~~l~~~~---~~~~~vI~L~~~~e~~~~ 203 (284)
+++..+. ..+.+. ... ..-+|+|.- .+.+.+ ..+|.+|++++|.++.++
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evP--------LL~E~~~~~~~~D~iv~V~a~~e~ri~ 152 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAP--------TLFETKTFTYFVSASVVVSCSEERQIE 152 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEec--------hhhccCchhhcCCeEEEEECCHHHHHH
Confidence 1222221 222110 011 235777752 111111 247999999999999999
Q ss_pred HHHcCC
Q 023307 204 RVVGRR 209 (284)
Q Consensus 204 Rl~~R~ 209 (284)
|+..|+
T Consensus 153 RL~~R~ 158 (244)
T PTZ00451 153 RLRKRN 158 (244)
T ss_pred HHHHcC
Confidence 999985
No 72
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.37 E-value=1.9e-11 Score=103.17 Aligned_cols=116 Identities=20% Similarity=0.174 Sum_probs=64.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehh--------HHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhc
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAG--------DLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~d--------dlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~ 157 (284)
+|+|.|++||||||+++.|++++++.++.-. .+++..+.+.......++.++ - ....+.+.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~------~-~~r~~~~~~~~~ 73 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYF------L-LSRLKQYKDALE 73 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHH------H-HHHHHHHHHHHh
Confidence 4899999999999999999998887655311 112111110000000000000 0 001112222232
Q ss_pred CCCCCCCeEEEeCcccCH------------------HHHHH----HHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 158 QPDSQENGWLLDGYPRSL------------------SQATA----LKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 158 ~~~~~~~g~IlDg~p~~~------------------~q~~~----l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
. ...+..+|+|.++..- ..... +......|+++|||+++++++.+|+.+|+
T Consensus 74 ~-~~~~~~vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri~~R~ 146 (193)
T cd01673 74 H-LSTGQGVILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRIKKRG 146 (193)
T ss_pred h-cccCCceEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 2 2346889999754321 11111 11123579999999999999999999885
No 73
>PRK07933 thymidylate kinase; Validated
Probab=99.36 E-value=1.4e-11 Score=105.84 Aligned_cols=171 Identities=16% Similarity=0.121 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC---CcEeehhHHHHHHHHcCCcchHHHHHHHHcC--CCcChHHHHHHH-------
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKG--QLVPDEIVVTMV------- 152 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~---~~~is~ddlir~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l------- 152 (284)
++|+|.|+.||||||+++.|++.+. ..++-+..- ...++..+..+++.+... ....+.....++
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P----~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~ 76 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP----RYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAG 76 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC----CCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhh
Confidence 4799999999999999999999883 333211000 001223334444443321 110000000000
Q ss_pred -HHHhcCCCCCCCeEEEeCcccC-----------------HHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCC
Q 023307 153 -KERLSQPDSQENGWLLDGYPRS-----------------LSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLD 211 (284)
Q Consensus 153 -~~~i~~~~~~~~g~IlDg~p~~-----------------~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~ 211 (284)
...|......+..+|+|.|... ..++..+.. ....||++|||++++++..+|+.+|+..
T Consensus 77 ~~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~ 156 (213)
T PRK07933 77 ARDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQ 156 (213)
T ss_pred hHHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccc
Confidence 1123222234677899974321 112222222 1236999999999999999999998521
Q ss_pred CCCCceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHh-hccceEEeccCcccceec
Q 023307 212 PVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLY-EDVTVEVCDMISLSFCFH 281 (284)
Q Consensus 212 ~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y-~~~~i~ID~~~~~~~v~~ 281 (284)
. .+.. ..+++... ..++..++.|..+.+.+ +..++.|||+.+.++|..
T Consensus 157 ~-~~~~-----------------~d~~E~~~----~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~ 205 (213)
T PRK07933 157 D-ADRA-----------------RDAYERDD----GLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAA 205 (213)
T ss_pred c-CCcc-----------------cccccccH----HHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHH
Confidence 0 0000 00111111 22333344555555543 557899999998877653
No 74
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.35 E-value=8.9e-12 Score=100.86 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=70.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcC---hHHHHHHHHHHhc-CCCC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP---DEIVVTMVKERLS-QPDS 161 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~l~~~i~-~~~~ 161 (284)
+|+|.|+|||||||+|+.|++.+++.+++.|++...... ..+..+.... .+.....+...+. ....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 70 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANI----------AKMAAGIPLNDEDRWPWLQALTDALLAKLAS 70 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHH----------HHHHcCCCCCccchhhHHHHHHHHHHHHHHh
Confidence 488999999999999999999999999998887653210 0011111111 0111111211111 1112
Q ss_pred CCCeEEEeCcccCHHHHHHHHHc-CCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 162 QENGWLLDGYPRSLSQATALKKY-GFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~q~~~l~~~-~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+..+|+|...........+... ......+|||+++.+++.+|+..|.
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~ 119 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK 119 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc
Confidence 35678998633333333444433 1245679999999999999999995
No 75
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.34 E-value=2.5e-12 Score=107.94 Aligned_cols=136 Identities=19% Similarity=0.263 Sum_probs=90.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh----CCcEeehhHHHHHHHHcCCcch----HHHHHHHHcCCCcChHHH-------
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY----GLVHIAAGDLLRAEIAAGSENG----KRAKEHMEKGQLVPDEIV------- 148 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~----~~~~is~ddlir~~~~~~~~~~----~~~~~~~~~g~~~~~~~~------- 148 (284)
+..|+|+||+||||+|+++.|.+.+ ...+..+....+.....|.+.. ..+...+..|.+++...+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 3579999999999999999999885 3333334444443333333333 667777777777654322
Q ss_pred -HHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEE-cCHHHHHHHHHcCCCCCCCCceeeccCCCCC
Q 023307 149 -VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLE-VPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 226 (284)
Q Consensus 149 -~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~-~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~ 226 (284)
...+.+.+.. ++.+|+|+.+....+++... . ..++|||. .+.+.+.+|+..|+
T Consensus 82 ~~~~i~~~~~~----~~~~ild~~~~~~~~l~~~~---~-~~~vIfi~~~s~~~l~~rl~~R~----------------- 136 (184)
T smart00072 82 SKETIRQVAEQ----GKHCLLDIDPQGVKQLRKAQ---L-YPIVIFIAPPSSEELERRLRGRG----------------- 136 (184)
T ss_pred CHHHHHHHHHc----CCeEEEEECHHHHHHHHHhC---C-CcEEEEEeCcCHHHHHHHHHhcC-----------------
Confidence 2244444433 78999999887776665432 2 33788887 66677999999885
Q ss_pred chHHhhhhcccCCCCHHHHHHHHHHHHHhH
Q 023307 227 TDEIAARLTKRFDDTEEKVKLRLKTHHHNV 256 (284)
Q Consensus 227 ~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~ 256 (284)
+++.+.+++|+.......
T Consensus 137 ------------~~~~~~i~~rl~~a~~~~ 154 (184)
T smart00072 137 ------------TETAERIQKRLAAAQKEA 154 (184)
T ss_pred ------------CCCHHHHHHHHHHHHHHH
Confidence 456788899998654443
No 76
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.34 E-value=1.5e-11 Score=102.08 Aligned_cols=171 Identities=19% Similarity=0.169 Sum_probs=107.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHH----------------
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI---------------- 147 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~---------------- 147 (284)
+.++.|+|..||||||+++.+. ++|++++|.|.+.|+..++|++-...+.+.+....+.++..
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 3689999999999999999995 89999999999999999999998888887765543332211
Q ss_pred ------------HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCC
Q 023307 148 ------------VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (284)
Q Consensus 148 ------------~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (284)
..+++++...-.....+-+|+|- |.-++- +.+. .+..+|.+.||.++-++|+..|+......
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDi-PLLFE~-~~~~----~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~d 153 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDI-PLLFEA-KLLK----ICHKTVVVTCDEELQLERLVERDELSEED 153 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEec-hHHHHH-hHHh----heeeEEEEEECcHHHHHHHHHhccccHHH
Confidence 11111111111122234455653 332222 2222 35679999999999999999997443333
Q ss_pred ceeeccCCCCCchHHh-hhhcccCCCCHHHHHHHHHHHHHhHHHHHH
Q 023307 216 KIYHVKYSPPETDEIA-ARLTKRFDDTEEKVKLRLKTHHHNVEAVLS 261 (284)
Q Consensus 216 ~~~~~~~~~p~~~~~~-~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~ 261 (284)
..-..+.+.|.++... .+...+.+.+.+.+.+..........+...
T Consensus 154 Ae~Rl~sQmp~~~k~~~a~~Vi~Nng~~~~l~~qv~~v~~~~~~s~~ 200 (225)
T KOG3220|consen 154 AENRLQSQMPLEKKCELADVVIDNNGSLEDLYEQVEKVLALLQKSIP 200 (225)
T ss_pred HHHHHHhcCCHHHHHHhhheeecCCCChHHHHHHHHHHHHHhcchhH
Confidence 3344566666655443 333444445555555555555444444333
No 77
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.33 E-value=1.4e-11 Score=103.34 Aligned_cols=158 Identities=20% Similarity=0.153 Sum_probs=91.6
Q ss_pred EEcCCCCCHHHHHHHHHHHhC---CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHH--------HHHHHHHHhc
Q 023307 89 ISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI--------VVTMVKERLS 157 (284)
Q Consensus 89 I~G~pGsGKSTla~~La~~~~---~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~l~~~i~ 157 (284)
|.|+.||||||+++.|++++. ..++-.- ...+++.|..+++++.......... ....+...|.
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~------~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~ 74 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITF------PPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIR 74 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEE------SSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccC------CCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999883 2211100 0112233444444444221111110 0011112222
Q ss_pred CCCCCCCeEEEeCccc------------CHHHHHHHHHcCC--CCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCC
Q 023307 158 QPDSQENGWLLDGYPR------------SLSQATALKKYGF--QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 223 (284)
Q Consensus 158 ~~~~~~~g~IlDg~p~------------~~~q~~~l~~~~~--~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~ 223 (284)
.....+..+|+|.|.. ....+..+..... .||++|||+++++++.+|+..|+.
T Consensus 75 ~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~------------- 141 (186)
T PF02223_consen 75 PALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE------------- 141 (186)
T ss_dssp HHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS-------------
T ss_pred HHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc-------------
Confidence 2222478899996311 1333333433222 899999999999999999999962
Q ss_pred CCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 224 PPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 224 ~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
.++....-...+..+++.+..+.+ +...++.||++.+.++|.
T Consensus 142 --------------~~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~iid~~~~~e~v~ 183 (186)
T PF02223_consen 142 --------------KDDEEEEDLEYLRRVREAYLELAK-DPNNWVIIDASRSIEEVH 183 (186)
T ss_dssp --------------TTTTTTHHHHHHHHHHHHHHHHHH-TTTTEEEEETTS-HHHHH
T ss_pred --------------cchHHHHHHHHHHHHHHHHHHHHc-CCCCEEEEECCCCHHHHH
Confidence 012222334556667777777777 677899999999987765
No 78
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.32 E-value=4.9e-11 Score=102.93 Aligned_cols=124 Identities=21% Similarity=0.275 Sum_probs=67.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHH-H-HHHHcCCcchH------HHHHHHHcCC---CcChHH-------
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLL-R-AEIAAGSENGK------RAKEHMEKGQ---LVPDEI------- 147 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddli-r-~~~~~~~~~~~------~~~~~~~~g~---~~~~~~------- 147 (284)
+|+|.|..||||||+++.|+++++..++...... . .....+...+. .++.+..... ......
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~q~~~~~~ 80 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEAGIHYLDSTTGDGKPLDPAFNGNCSLEKFYDDPKSNDGNSYRLQSWMYSS 80 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeeccchhccccccccccccccccCCCcCHHHHhcCCcccCCcchHHHHHHHHH
Confidence 4899999999999999999999987655322110 0 00001111111 1223322111 011110
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeCcccC------------------HHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHH
Q 023307 148 VVTMVKERLSQPDSQENGWLLDGYPRS------------------LSQATALKK----YGFQPDLFILLEVPEDTLVERV 205 (284)
Q Consensus 148 ~~~~l~~~i~~~~~~~~g~IlDg~p~~------------------~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl 205 (284)
..+.+.+.+......++.+|+|.+... ......+.. ....||++|||+++++.+.+|+
T Consensus 81 R~~~~~~~i~~~l~~g~~VI~DR~~~S~~~f~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~Pd~~i~l~~~~~~~~~Ri 160 (219)
T cd02030 81 RLLQYSDALEHLLSTGQGVVLERSPFSDFVFLEAMYKQGYIRKQCVDHYNEVKGNTIPELLPPHLVIYLDVPVPEVQKRI 160 (219)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecchhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHH
Confidence 111122223323334678999975211 111111111 1257999999999999999999
Q ss_pred HcCC
Q 023307 206 VGRR 209 (284)
Q Consensus 206 ~~R~ 209 (284)
.+|+
T Consensus 161 ~~R~ 164 (219)
T cd02030 161 KKRG 164 (219)
T ss_pred HHcC
Confidence 9986
No 79
>PRK13976 thymidylate kinase; Provisional
Probab=99.32 E-value=1.4e-11 Score=105.37 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=87.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-----cEeehhHHHHHHHHcCCcchHHHHHHHHcC-CCcChHH-------HHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKG-QLVPDEI-------VVTM 151 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~-----~~is~ddlir~~~~~~~~~~~~~~~~~~~g-~~~~~~~-------~~~~ 151 (284)
++|+|.|..||||||+++.|++.+.- .++-+ + ...++..++.+++++... ...+... ..+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~----~--eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~ 74 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLT----R--EPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREH 74 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEe----e--CCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999988732 22210 0 112344555555554321 1111111 1111
Q ss_pred HHHHhcCCCCCCCeEEEeCccc------------CHHHHHHHHH--cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCce
Q 023307 152 VKERLSQPDSQENGWLLDGYPR------------SLSQATALKK--YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI 217 (284)
Q Consensus 152 l~~~i~~~~~~~~g~IlDg~p~------------~~~q~~~l~~--~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~ 217 (284)
+.+.|......+..+|.|.|.. ..+.+..+.. ....||++|||++|++++.+|+..|+.
T Consensus 75 ~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~------- 147 (209)
T PRK13976 75 FVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGY------- 147 (209)
T ss_pred HHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccch-------
Confidence 1222333333477888886432 1223333432 234799999999999999999864421
Q ss_pred eeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEecc
Q 023307 218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDM 273 (284)
Q Consensus 218 ~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~ 273 (284)
+. .-.+.++..++.|..+.+.+.+.++.||++
T Consensus 148 ---------------------e~---~~~~~l~~v~~~Y~~l~~~~~~~~~~id~~ 179 (209)
T PRK13976 148 ---------------------EF---MDLEFYDKVRKGFREIVIKNPHRCHVITCI 179 (209)
T ss_pred ---------------------hc---ccHHHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 11 112334444566666777777778889984
No 80
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.31 E-value=2.2e-11 Score=103.26 Aligned_cols=116 Identities=17% Similarity=0.207 Sum_probs=74.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCC-----cC----------------
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VP---------------- 144 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~-----~~---------------- 144 (284)
.|+|+|++||||||+++.|++ +|+.+++.|++.++.+..+......+.+.+..... +.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 389999999999999999965 79999999999999888776655555554432111 11
Q ss_pred --hHHHHHHHHHHh----cCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 145 --DEIVVTMVKERL----SQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 145 --~~~~~~~l~~~i----~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+.+++..+...+ ... ..+..+|+|. |.-.+ ... ...+|.+|++++|.++..+|+..|+
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~-~~~~~vi~e~-pLL~E-~~~----~~~~D~vi~V~a~~e~r~~RL~~R~ 143 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTT-AEGKLVIWEV-PLLFE-TDA----YTLCDATVTVDSDPEESILRTISRD 143 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHH-hcCCcEEEEe-eeeeE-cCc----hhhCCEEEEEECCHHHHHHHHHHcC
Confidence 112233332222 211 1123455554 22111 000 1247999999999999999999995
No 81
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.30 E-value=2.7e-11 Score=99.18 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHhcCCCCCCCeEEEeC-
Q 023307 93 PASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQENGWLLDG- 170 (284)
Q Consensus 93 pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~~~g~IlDg- 170 (284)
|||||||+++.||+.+|++++|+|+++.+.. +..+.+++.. |.......-.+.+.+.+.. ...+|--|
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~------g~si~~i~~~~G~~~fr~~E~~~l~~l~~~----~~~VIa~GG 70 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT------GMSISEIFAEEGEEAFRELESEALRELLKE----NNCVIACGG 70 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH------TSHHHHHHHHHHHHHHHHHHHHHHHHHHCS----SSEEEEE-T
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh------CCcHHHHHHcCChHHHHHHHHHHHHHHhcc----CcEEEeCCC
Confidence 7999999999999999999999999987743 2334444332 2110011122223333322 23444333
Q ss_pred -cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCCHHHHHHHH
Q 023307 171 -YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRL 249 (284)
Q Consensus 171 -~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl 249 (284)
.....+..+.+.. ...+|||+++.+.+.+|+..+...| -..+ .......+
T Consensus 71 G~~~~~~~~~~L~~----~g~vI~L~~~~~~l~~Rl~~~~~Rp------------------------~l~~-~~~~~~~~ 121 (158)
T PF01202_consen 71 GIVLKEENRELLKE----NGLVIYLDADPEELAERLRARDNRP------------------------LLKG-KMEHEEIL 121 (158)
T ss_dssp TGGGSHHHHHHHHH----HSEEEEEE--HHHHHHHHHHHCTSG------------------------GTCS-HHHHHHHH
T ss_pred CCcCcHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCCCCC------------------------CCCC-CChHHHHH
Confidence 5555566666663 3479999999999999998775200 0111 11222333
Q ss_pred HHHHHhHHHHHHHhhccceEEeccCcccceec
Q 023307 250 KTHHHNVEAVLSLYEDVTVEVCDMISLSFCFH 281 (284)
Q Consensus 250 ~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~~ 281 (284)
..+. ...++++.+.+.++.+++..+++++.+
T Consensus 122 ~~~~-~R~~~Y~~~a~~~v~~~~~~~~~i~~~ 152 (158)
T PF01202_consen 122 ELLF-EREPLYEQAADIVVDTDGSPPEEIAEE 152 (158)
T ss_dssp HHHH-HHHHHHHHHSSEEEETSSCHHHHHHHH
T ss_pred HHHH-HHHHHHHhcCeEEEeCCCCCHHHHHHH
Confidence 3344 666777777666666665554455443
No 82
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=2.4e-11 Score=96.34 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=80.9
Q ss_pred EcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHH---HHHHHHHHhcCCCCCCCeE
Q 023307 90 SGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI---VVTMVKERLSQPDSQENGW 166 (284)
Q Consensus 90 ~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~l~~~i~~~~~~~~g~ 166 (284)
+|.+||||||+++.|++++|+.+++-|++.-.. -.+.+..|.++.|+. +.+.+.+++......++..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~a----------Ni~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~ 70 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPA----------NIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHV 70 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHH----------HHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCce
Confidence 589999999999999999999999977764331 113477788877654 4556666666554445555
Q ss_pred EEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCcee
Q 023307 167 LLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY 218 (284)
Q Consensus 167 IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~ 218 (284)
|+-+..........+.. +..-..+|||+.+.+++.+|+..|..|.+...+.
T Consensus 71 vi~CSALKr~YRD~LR~-~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll 121 (161)
T COG3265 71 VIACSALKRSYRDLLRE-ANPGLRFVYLDGDFDLILERMKARKGHFMPASLL 121 (161)
T ss_pred EEecHHHHHHHHHHHhc-cCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHH
Confidence 66553222222233333 3234678999999999999999998876554443
No 83
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.28 E-value=5.3e-11 Score=100.03 Aligned_cols=61 Identities=26% Similarity=0.462 Sum_probs=44.9
Q ss_pred CCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhcc
Q 023307 187 QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDV 266 (284)
Q Consensus 187 ~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~ 266 (284)
.||++|||+|+.+++++|+.+|+. .|+. +...+. +..++.++..|..+...|...
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~RgR------~~E~------------------~~~~~~-~~Y~~~l~~~Y~~~~~~~~~~ 180 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKRGR------PFEI------------------DNFDEN-KDYLKDLHRRYDDWFENYDAC 180 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCC------Cccc------------------ccccch-HHHHHHHHHHHHHHHHhcccC
Confidence 799999999999999999999963 2221 111122 677888899999999998643
Q ss_pred -ceEEec
Q 023307 267 -TVEVCD 272 (284)
Q Consensus 267 -~i~ID~ 272 (284)
++.||+
T Consensus 181 ~~l~i~~ 187 (216)
T COG1428 181 PVLGIDG 187 (216)
T ss_pred Ceeeecc
Confidence 555555
No 84
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.28 E-value=1.4e-11 Score=117.82 Aligned_cols=108 Identities=22% Similarity=0.338 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHhcC---CC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQ---PD 160 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i~~---~~ 160 (284)
|.|+|+|++||||||+++.|++++|++++++|+++.+. .+ ..+.+++.. |.....+.-.+.+.+.... ..
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~--~g----~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vi 74 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERR--EG----RSVRRIFEEDGEEYFRLKEKELLRELVERDNVVV 74 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHH--cC----CCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEE
Confidence 36999999999999999999999999999999998763 22 223333322 2111111111222222111 01
Q ss_pred CCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
..+.|+|+|. ...+.+.+ ..+|||+++.+++.+|+..+
T Consensus 75 s~Gggvv~~~-----~~r~~l~~-----~~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 75 ATGGGVVIDP-----ENRELLKK-----EKTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred ECCCccccCh-----HHHHHHhc-----CeEEEEECCHHHHHHHhccC
Confidence 1233333332 33344442 35899999999999999765
No 85
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.27 E-value=7.3e-11 Score=106.98 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=69.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHhcCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i~~~~ 160 (284)
.....|+|+|++||||||+++.|++.+|++++++|..+.... + ..+.+++.. |...-.+...+.+.+.+..
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~--G----~~i~ei~~~~G~~~fr~~e~~~l~~ll~~-- 202 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA--G----LSVSEIFALYGQEGYRRLERRALERLIAE-- 202 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh--C----CCHHHHHHHHCHHHHHHHHHHHHHHHHhh--
Confidence 345689999999999999999999999999999998776632 2 222232221 2111111112223332221
Q ss_pred CCCCeEEEe-Cc--ccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 161 SQENGWLLD-GY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 161 ~~~~g~IlD-g~--p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
...+|+. |. .......+.+.. ..++|||+++.+++.+|+.+|.
T Consensus 203 --~~~~VI~~Ggg~v~~~~~~~~l~~----~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 203 --HEEMVLATGGGIVSEPATFDLLLS----HCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred --CCCEEEECCCchhCCHHHHHHHHh----CCEEEEEECCHHHHHHHHhcCC
Confidence 2234443 32 222223333332 4579999999999999999874
No 86
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.27 E-value=5.7e-11 Score=97.52 Aligned_cols=111 Identities=18% Similarity=0.238 Sum_probs=64.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH----HHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE----IAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
|+|.|++||||||+++.|++.++..+++.|++.... ...+...... . .+.+ ...+.+.+......
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~--~--------~~~~-~~~~~~~~~~~l~~ 69 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDD--D--------RWPW-LQNLNDASTAAAAK 69 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChh--h--------HHHH-HHHHHHHHHHHHhc
Confidence 578999999999999999999999999988864221 1111111000 0 0111 11222222222222
Q ss_pred CCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
++.+|+|.-.........+...+ ....++||+++.+++.+|+..|.
T Consensus 70 ~~~~Vi~~t~~~~~~r~~~~~~~-~~~~~i~l~~~~e~~~~R~~~R~ 115 (163)
T TIGR01313 70 NKVGIITCSALKRHYRDILREAE-PNLHFIYLSGDKDVILERMKARK 115 (163)
T ss_pred CCCEEEEecccHHHHHHHHHhcC-CCEEEEEEeCCHHHHHHHHHhcc
Confidence 34446654322233333444332 34467999999999999999985
No 87
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.27 E-value=4.1e-11 Score=96.14 Aligned_cols=103 Identities=23% Similarity=0.296 Sum_probs=64.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCCe
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQENG 165 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~g 165 (284)
+|+|+|++||||||+|+.|++++|+++++.+.+..+... ....... ....+...+...+.+.. ....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~----------~~~~~~~--~~~~i~~~l~~~~~~~~-~~~~ 67 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG----------KLASEVA--AIPEVRKALDERQRELA-KKPG 67 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH----------HHHHHhc--ccHhHHHHHHHHHHHHh-hCCC
Confidence 489999999999999999999999999998844333211 1100000 00111122222222221 2457
Q ss_pred EEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 166 WLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 166 ~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
||+||...... + ....+++|||++|++.+.+|+..|
T Consensus 68 ~Vidg~~~~~~----~---~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 68 IVLEGRDIGTV----V---FPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred EEEEeeeeeeE----E---cCCCCEEEEEECCHHHHHHHHHHH
Confidence 99999532110 0 124789999999999999999985
No 88
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=4.2e-11 Score=95.51 Aligned_cols=126 Identities=21% Similarity=0.272 Sum_probs=85.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHH---HHHHHHHHhcCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI---VVTMVKERLSQPD 160 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~l~~~i~~~~ 160 (284)
+-+|+|+|.+||||||+++.|++++++.+++.||+.-.+ -.+.+.+|..+.|+. +...+...+....
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~----------NveKM~~GipLnD~DR~pWL~~i~~~~~~~l 81 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPA----------NVEKMTQGIPLNDDDRWPWLKKIAVELRKAL 81 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHH----------HHHHHhcCCCCCcccccHHHHHHHHHHHHHh
Confidence 348999999999999999999999999999988875432 224567777766543 3333444443333
Q ss_pred CCCCeEEEeCcccCHHHHHHHHHc------CC---CCcEEEEEEcCHHHHHHHHHcCCCCCCCCceee
Q 023307 161 SQENGWLLDGYPRSLSQATALKKY------GF---QPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH 219 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~~------~~---~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~ 219 (284)
..++++|+-+...-......+... +. ....+|+|.++.|++.+|+..|..|.+...+..
T Consensus 82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lle 149 (191)
T KOG3354|consen 82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLE 149 (191)
T ss_pred hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHH
Confidence 357899998743222222223220 11 224689999999999999999987765544433
No 89
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.26 E-value=3.2e-11 Score=99.53 Aligned_cols=147 Identities=21% Similarity=0.274 Sum_probs=90.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHH---cCCc----chHHHHHHHHcCCCcChHHHHHHH---
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA---AGSE----NGKRAKEHMEKGQLVPDEIVVTMV--- 152 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~---~~~~----~~~~~~~~~~~g~~~~~~~~~~~l--- 152 (284)
++++|+|+||+|+||||++++|.+..++ .+++...-|.... +|.+ ..++++.++.++.+++++.+....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l-~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL-RFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCe-EEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 6789999999999999999999998844 4444443333211 1211 236677777777777655332211
Q ss_pred -HHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCH-HHHHHHHHcCCCCCCCCceeeccCCCCCchHH
Q 023307 153 -KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPE-DTLVERVVGRRLDPVTGKIYHVKYSPPETDEI 230 (284)
Q Consensus 153 -~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~-e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~ 230 (284)
...+.+....++.+|+|-.-.. +....... ...+.||+.+|. +++.+|+.+|+
T Consensus 82 ~~~~ve~~~~~G~~vildId~qG---a~qvk~~~-p~~v~IFi~pPs~eeL~~RL~~Rg--------------------- 136 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDVQG---ALQVKKKM-PNAVSIFILPPSLEELERRLKGRG--------------------- 136 (191)
T ss_pred cHHHHHHHHhcCCeEEEEEehHH---HHHHHHhC-CCeEEEEEcCCCHHHHHHHHHccC---------------------
Confidence 2223333334778888853222 23333322 233445544443 67788888776
Q ss_pred hhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhh
Q 023307 231 AARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYE 264 (284)
Q Consensus 231 ~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~ 264 (284)
.++.+.+++|+...+.+.....+ |+
T Consensus 137 --------tds~e~I~~Rl~~a~~Ei~~~~~-fd 161 (191)
T COG0194 137 --------TDSEEVIARRLENAKKEISHADE-FD 161 (191)
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHh-CC
Confidence 58899999999999888866554 44
No 90
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.25 E-value=4.7e-12 Score=108.25 Aligned_cols=159 Identities=22% Similarity=0.267 Sum_probs=87.7
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh-CC--cEeehhHHHHHHHHcCCc----chHHHHHHHHcCCCcChHHHH---
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY-GL--VHIAAGDLLRAEIAAGSE----NGKRAKEHMEKGQLVPDEIVV--- 149 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~-~~--~~is~ddlir~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~--- 149 (284)
.+..+.+|+|+||+||||||+++.|.+.. .+ +...+...-+.....+.. ....+...+.+|.++......
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 34567899999999999999999997642 11 111111110000001111 112344445455544322111
Q ss_pred -----HHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcC--HHHHHHHHHcCCCCCCCCceeeccC
Q 023307 150 -----TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVP--EDTLVERVVGRRLDPVTGKIYHVKY 222 (284)
Q Consensus 150 -----~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~--~e~~~~Rl~~R~~~~~~g~~~~~~~ 222 (284)
..+...+. .++.+|+|..... +..+.+. .++.++++.++ .+++.+|+..|+
T Consensus 89 YGt~~~~i~~~~~----~g~~vi~~~~~~g---~~~l~~~--~pd~~~if~~pps~e~l~~Rl~~R~------------- 146 (206)
T PRK14738 89 YGVPKAPVRQALA----SGRDVIVKVDVQG---AASIKRL--VPEAVFIFLAPPSMDELTRRLELRR------------- 146 (206)
T ss_pred ecCCHHHHHHHHH----cCCcEEEEcCHHH---HHHHHHh--CCCeEEEEEeCCCHHHHHHHHHHcC-------------
Confidence 22333333 3677899875433 3344443 36776666654 568899999885
Q ss_pred CCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCcccce
Q 023307 223 SPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFC 279 (284)
Q Consensus 223 ~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v 279 (284)
++..+.+.+|+..+....... +...++.||++.+.+++
T Consensus 147 ----------------~~~~~~~~~Rl~~~~~e~~~~---~~~~~~iId~~~~~e~v 184 (206)
T PRK14738 147 ----------------TESPEELERRLATAPLELEQL---PEFDYVVVNPEDRLDEA 184 (206)
T ss_pred ----------------CCCHHHHHHHHHHHHHHHhcc---cCCCEEEECCCCCHHHH
Confidence 234567888887766554322 22247789987666543
No 91
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.24 E-value=5.8e-11 Score=110.97 Aligned_cols=118 Identities=21% Similarity=0.296 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh--------------
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD-------------- 145 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~-----~~~-------------- 145 (284)
++|+|+|++||||||+++.|++ +|++++|+|.+.++.+..+......+.+.+..+.+ +..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 5799999999999999999987 89999999999999888766544444443322211 111
Q ss_pred ----HHHHHHHHHHhcCCC--CCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 146 ----EIVVTMVKERLSQPD--SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 146 ----~~~~~~l~~~i~~~~--~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
.+++..+...+.+.. ..++.+|+.+.|.-.+. .+ ...+|.+|+|++|.+++++|+..|
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~--~~---~~~~D~iI~V~ap~e~ri~Rl~~r 144 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES--GM---APLFHLVVVVDADVEVRVRRLVEQ 144 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC--Cc---hhhCCEEEEEECCHHHHHHHHHhc
Confidence 112222222221110 12345666654322211 01 124789999999999999999985
No 92
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.23 E-value=7.2e-11 Score=98.23 Aligned_cols=123 Identities=11% Similarity=0.173 Sum_probs=71.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc--EeehhHHHHHHHHcCCcchHHHHHH-HHc-CCCcChH---HHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLV--HIAAGDLLRAEIAAGSENGKRAKEH-MEK-GQLVPDE---IVVTMVKERL 156 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~--~is~ddlir~~~~~~~~~~~~~~~~-~~~-g~~~~~~---~~~~~l~~~i 156 (284)
..+|+|.|+|||||||+|+.|++.++.. +++.|++.......... .. ... +.. +...++. .+...+...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQD-AE--GGIEFDGDGGVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcc-cc--cccccCccCCcccchHHHHHHHHHHHHH
Confidence 3589999999999999999999998654 45667665442111000 00 000 000 0111111 1233334444
Q ss_pred cCCCCCCCeEEEeC-cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 157 SQPDSQENGWLLDG-YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 157 ~~~~~~~~g~IlDg-~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
......+..+|+|. +.......+.+......+..+|+|+|+.+++.+|+.+|+
T Consensus 79 ~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 79 AAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 44445588999997 331222223333332245689999999999999999985
No 93
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.22 E-value=9.4e-11 Score=98.53 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH----HHcC-CcchHHHHHHHHcCCCcChHHH-------HHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE----IAAG-SENGKRAKEHMEKGQLVPDEIV-------VTMV 152 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~----~~~~-~~~~~~~~~~~~~g~~~~~~~~-------~~~l 152 (284)
.+|+|+||+||||||++++|+..++..++..+..+... .... ...++.+....+.+........ ...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~ 82 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEI 82 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHH
Confidence 57999999999999999999988776555433322211 0000 0112222233333332211100 0112
Q ss_pred HHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 153 KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 153 ~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
...+. .+..+|++|.-... ..+.+.......+|||++|.+++.+|+..|+
T Consensus 83 ~~~l~----~g~~VI~~G~~~~~---~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 83 DLWLH----AGFDVLVNGSRAHL---PQARARYQSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred HHHHh----CCCEEEEeChHHHH---HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence 33332 35678888852222 2233332345678999999999999999874
No 94
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.19 E-value=2.2e-11 Score=94.76 Aligned_cols=108 Identities=25% Similarity=0.380 Sum_probs=59.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCC--CCCC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP--DSQE 163 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~--~~~~ 163 (284)
+|+|.|+|||||||+|+.|++++|++++++|+++....... ...+.........+.+...+... ....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 70 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIE----------RDDDEREYIDADIDLLDDILEQLQNKPDN 70 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCH----------GCTTCCHHHHHHHHHHHHHHHHHHETTT-
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccc----------cCcchhhHHHHHHHHHHHHHHhhhccCCC
Confidence 68999999999999999999999999999999542110000 00111000011112222222211 2235
Q ss_pred CeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 164 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 164 ~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
..||+||.-. . .. .+ .....+.+||++++.+++.+|+.+|
T Consensus 71 ~~~ii~g~~~-~-~~-~~--~~~~~~~~i~l~~~~~~~~~~~~~R 110 (121)
T PF13207_consen 71 DNWIIDGSYE-S-EM-EI--RLPEFDHVIYLDAPDEECRERRLKR 110 (121)
T ss_dssp -EEEEECCSC-H-CC-HS--CCHHGGCEEEEEEEEHHHHHHHHHH
T ss_pred CeEEEeCCCc-c-ch-hh--hhhcCCEEEEEECCCHHHHHHHHHH
Confidence 7899999321 1 00 00 0012457999999988665555554
No 95
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.19 E-value=9.5e-11 Score=103.00 Aligned_cols=109 Identities=23% Similarity=0.351 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
.|+|+|+|||||||+|+.|++.++ +.+++. |.++..+..... .....+ .+.....+...+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~-D~lr~~~~~~~~---~~e~~~-------~~~~~~~i~~~l~--- 66 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT-DLIRESFPVWKE---KYEEFI-------RDSTLYLIKTALK--- 66 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc-HHHHHHhHHhhH---HhHHHH-------HHHHHHHHHHHHh---
Confidence 489999999999999999999872 345553 445443321000 000110 1122233444443
Q ss_pred CCCCeEEEeCcccCHH---HHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 161 SQENGWLLDGYPRSLS---QATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~---q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+..+|+|+...... ++..+......+.++|||++|.+++.+|...|+
T Consensus 67 -~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~ 117 (249)
T TIGR03574 67 -NKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERG 117 (249)
T ss_pred -CCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCC
Confidence 356799998543322 222233333357789999999999999999885
No 96
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.16 E-value=9.3e-11 Score=98.84 Aligned_cols=39 Identities=33% Similarity=0.550 Sum_probs=36.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI 123 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~ 123 (284)
++|.|-||.||||||+|+.||++||+.|++++.++|...
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a 43 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVA 43 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHH
Confidence 789999999999999999999999999999999998863
No 97
>PRK06547 hypothetical protein; Provisional
Probab=99.16 E-value=8.4e-11 Score=97.63 Aligned_cols=125 Identities=16% Similarity=0.187 Sum_probs=71.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHH-HHHHcCCCc--ChHHHHHHHHHHhc
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAK-EHMEKGQLV--PDEIVVTMVKERLS 157 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~-~~~~~g~~~--~~~~~~~~l~~~i~ 157 (284)
...+++|+|.|++||||||+++.|++.+++.++++|++......- ......+. .++..|... +-+........ ..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~-~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~-~~ 89 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGL-AAASEHVAEAVLDEGRPGRWRWDWANNRPGD-WV 89 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccC-ChHHHHHHHHHHhCCCCceecCCCCCCCCCC-cE
Confidence 466789999999999999999999999999999999887431100 00011111 222222211 00000000000 00
Q ss_pred CCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 158 QPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 158 ~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
. ......+|++|..........+... ....+.|||++|.+++.+|+..|.
T Consensus 90 ~-l~~~~vVIvEG~~al~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 90 S-VEPGRRLIIEGVGSLTAANVALASL-LGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred E-eCCCCeEEEEehhhccHHHHHHhcc-CCCEEEEEEECCHHHHHHHHHhcC
Confidence 0 1124578899843322222222211 123389999999999999999995
No 98
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.15 E-value=3.9e-10 Score=92.83 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=61.4
Q ss_pred EcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH-HHcCCcchHHHHHHHHcCCCcChH---HHHHHHHHHhcCC-CCCCC
Q 023307 90 SGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE-IAAGSENGKRAKEHMEKGQLVPDE---IVVTMVKERLSQP-DSQEN 164 (284)
Q Consensus 90 ~G~pGsGKSTla~~La~~~~~~~is~ddlir~~-~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~l~~~i~~~-~~~~~ 164 (284)
+|++||||||+++.|++.+|..+++.|.+.... +.. ...|....++ .....+....... ...+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEK-----------MASGEPLNDDDRKPWLQALNDAAFAMQRTNKV 69 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhcc-----------ccCCCCCChhhHHHHHHHHHHHHHHHHHcCCc
Confidence 599999999999999999999999865442110 000 0111111111 1111111111110 11234
Q ss_pred eEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCC
Q 023307 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLD 211 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~ 211 (284)
.+|+-.+ .......+......+..+|||+++.+++.+|+..|..+
T Consensus 70 ~viv~s~--~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~ 114 (163)
T PRK11545 70 SLIVCSA--LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH 114 (163)
T ss_pred eEEEEec--chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCC
Confidence 4555333 23333333333445678999999999999999999743
No 99
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.14 E-value=2e-10 Score=109.75 Aligned_cols=40 Identities=30% Similarity=0.476 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~ 122 (284)
++++|.|.|++||||||+|+.|+++||+.+++.|+++|..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 6689999999999999999999999999999999999884
No 100
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.13 E-value=8e-10 Score=92.16 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=72.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcCh-------HHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD-------EIVVTMVKERL 156 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~l~~~i 156 (284)
+.+++|+|++||||||+++.|+..++..+++-+++.... ..+. +..|....+ ..+.......+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~---------~~r~-~~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK---------NIDK-MSQGIPLTDEDRLPWLERLNDASYSLY 72 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh---------HHHH-HhcCCCCCcccchHHHHHHHHHHHHHH
Confidence 458999999999999999999999999888866643210 0001 111211111 11111222221
Q ss_pred cCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeec
Q 023307 157 SQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHV 220 (284)
Q Consensus 157 ~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~ 220 (284)
.. ...|+|+..+. .....+.+ .....+..+|||+++.+++.+|+.+|..+..+..++..
T Consensus 73 ~~---~~~g~iv~s~~-~~~~R~~~-r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~ 131 (176)
T PRK09825 73 KK---NETGFIVCSSL-KKQYRDIL-RKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQS 131 (176)
T ss_pred hc---CCCEEEEEEec-CHHHHHHH-HhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHH
Confidence 11 14677775543 22222333 33335678999999999999999999765544444444
No 101
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.12 E-value=5.9e-10 Score=93.21 Aligned_cols=118 Identities=19% Similarity=0.042 Sum_probs=67.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
++.|+++|+|||||||+|+.|++.+ ++.++++..-....+..+...+..-+.+.+. -.+....++..++.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres----~~ks~~rlldSalk--- 73 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRES----FLKSVERLLDSALK--- 73 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHH----HHHHHHHHHHHHhc---
Confidence 3689999999999999999999987 3444443321111111111111111111100 01122234444443
Q ss_pred CCCCeEEEeCcc---cCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 161 SQENGWLLDGYP---RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 161 ~~~~g~IlDg~p---~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
+.-||+|... ....|+.........+..+||+.++.++|++|-..|+.
T Consensus 74 --n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erge 124 (261)
T COG4088 74 --NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGE 124 (261)
T ss_pred --ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCC
Confidence 4567788621 22334444444445788999999999999999988864
No 102
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=99.08 E-value=3.6e-09 Score=91.96 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=76.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEe---ehhHHHHHHHHc--------CCcc--hHHHHHHHHc--CCCcChH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHI---AAGDLLRAEIAA--------GSEN--GKRAKEHMEK--GQLVPDE 146 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~i---s~ddlir~~~~~--------~~~~--~~~~~~~~~~--g~~~~~~ 146 (284)
...++|++.|+.|+|||++|+.||+++|+.++ .+|+++-..... -... .-.++.+... +. ..-.
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~d-lsa~ 147 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGD-LSAA 147 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCcc-HHHH
Confidence 34679999999999999999999999998775 344443221110 0000 0011111111 00 0000
Q ss_pred H-------HHHHHHHHhcCCCCCCCeEEEeCcccC-HHHHHHHHH---------------------cCCCCcEEEEEEcC
Q 023307 147 I-------VVTMVKERLSQPDSQENGWLLDGYPRS-LSQATALKK---------------------YGFQPDLFILLEVP 197 (284)
Q Consensus 147 ~-------~~~~l~~~i~~~~~~~~g~IlDg~p~~-~~q~~~l~~---------------------~~~~~~~vI~L~~~ 197 (284)
. ......+++...+..++|+|++..|.. .-.++.+.. ....|++||||+.|
T Consensus 148 ~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~P 227 (393)
T KOG3877|consen 148 MQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTP 227 (393)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCC
Confidence 0 112224555556667999999974431 222222221 12568999999999
Q ss_pred HHHHHHHHHcCCC
Q 023307 198 EDTLVERVVGRRL 210 (284)
Q Consensus 198 ~e~~~~Rl~~R~~ 210 (284)
...+++++++|+.
T Consensus 228 v~~v~~~Ik~rg~ 240 (393)
T KOG3877|consen 228 VNKVLENIKRRGN 240 (393)
T ss_pred cHHHHHHHHhcCC
Confidence 9999999999974
No 103
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.08 E-value=3.8e-10 Score=94.01 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCc---EeehhHHHHHHHHcCCcc----hHHHHHHHHcCCCcChH-------HHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLV---HIAAGDLLRAEIAAGSEN----GKRAKEHMEKGQLVPDE-------IVVT 150 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~---~is~ddlir~~~~~~~~~----~~~~~~~~~~g~~~~~~-------~~~~ 150 (284)
.+|+|+|++||||||+++.|+..++.. .+.....-+.....+... ...+......+.+..-. -...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA 81 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence 479999999999999999999887532 111000101100011111 11222222222221100 0011
Q ss_pred HHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 151 MVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 151 ~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+...+. .+..+|+||.... ...+.+.. ....+|||+++.+++.+|+..|+
T Consensus 82 ~i~~~~~----~g~~vv~~g~~~~---~~~~~~~~-~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 82 EIDQWLE----AGDVVVVNGSRAV---LPEARQRY-PNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred HHHHHHh----cCCEEEEECCHHH---HHHHHHHC-CCcEEEEEECCHHHHHHHHHHcC
Confidence 1222222 3678999986322 22333222 24579999999999999999885
No 104
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.08 E-value=1.2e-09 Score=90.86 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=65.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERL 156 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i 156 (284)
..+.+|+|+|++||||||+++.|+++++ ..+++.| .+++.+.... .. ..... + .......+...+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d-~~r~~~~~~~-~~-~~~~~-~------~~~~~~~l~~~l 74 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD-ELREILGHYG-YD-KQSRI-E------MALKRAKLAKFL 74 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH-HHHhhcCCCC-CC-HHHHH-H------HHHHHHHHHHHH
Confidence 4567999999999999999999999885 5666643 4444322110 00 00000 0 001111222223
Q ss_pred cCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHc
Q 023307 157 SQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (284)
Q Consensus 157 ~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 207 (284)
. ..+..+|+|+... ......+......+..+|||+++.+++.+|+..
T Consensus 75 ~---~~g~~VI~~~~~~-~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 75 A---DQGMIVIVTTISM-FDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred H---hCCCEEEEEeCCc-HHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchh
Confidence 2 2356789987432 222222332223456899999999999999764
No 105
>PRK12338 hypothetical protein; Provisional
Probab=99.08 E-value=2.1e-09 Score=96.91 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=74.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcC--Ccc----hHH-HHHH--HHcC-CCcC-------
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG--SEN----GKR-AKEH--MEKG-QLVP------- 144 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~--~~~----~~~-~~~~--~~~g-~~~~------- 144 (284)
++|.+|+|.|+|||||||+|+.|++++|+.++..+|.+++.+..- .+. ... ...+ +... ...+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA 81 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence 356899999999999999999999999999997789888875531 110 000 0000 0000 0000
Q ss_pred -----hHHHHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 145 -----DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 145 -----~~~~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
-+.+...+...+......+..+|++|.-.....+.........+-.+++|..+.+..++|+..|..
T Consensus 82 gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 82 GFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhh
Confidence 111222222333332334779999994222222221111111234456666899999999999853
No 106
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.06 E-value=1.3e-09 Score=92.77 Aligned_cols=117 Identities=19% Similarity=0.243 Sum_probs=68.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc---EeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChH----HHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV---HIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE----IVVTMVKE 154 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~---~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~l~~ 154 (284)
.+..+|.|.|++||||||+|+.|.+.|+.. .++.|+.....-.. + ..+........|++ .+.+.+..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~--~----~~~~~~~n~d~p~A~D~dLl~~~L~~ 79 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHL--P----FEERNKINYDHPEAFDLDLLIEHLKD 79 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhc--C----HhhcCCcCccChhhhcHHHHHHHHHH
Confidence 455899999999999999999999999844 67777776532110 0 00000001111111 12222211
Q ss_pred HhcC--------------------CCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 155 RLSQ--------------------PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 155 ~i~~--------------------~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.... .......+|++|+....+ +.+.. ..|+-||++++.++++.|...|.
T Consensus 80 L~~g~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~---~~d~kIfvdtd~D~RliRri~RD 149 (218)
T COG0572 80 LKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRD---LMDLKIFVDTDADVRLIRRIKRD 149 (218)
T ss_pred HHcCCcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHh---hcCEEEEEeCCccHHHHHHHHHH
Confidence 1110 011256789999533222 22322 46899999999999999988875
No 107
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.06 E-value=2.7e-10 Score=95.80 Aligned_cols=125 Identities=18% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHH---cCCc----chHHHHHHHHcCCCcChHHH----HH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA---AGSE----NGKRAKEHMEKGQLVPDEIV----VT 150 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~---~~~~----~~~~~~~~~~~g~~~~~~~~----~~ 150 (284)
.++++|+|+||+||||||+++.|.+.+.-.+++....-|.... +|.+ ..+.+...+..|.++....+ ..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 3578999999999999999999988763223332222222100 0111 12455566666666543321 11
Q ss_pred HHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcC-HHHHHHHHHcCC
Q 023307 151 MVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVP-EDTLVERVVGRR 209 (284)
Q Consensus 151 ~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~-~e~~~~Rl~~R~ 209 (284)
.-.+.+......++.+|+|..+....+++. ......++|||.+| .+++.+|+..|+
T Consensus 82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~---~~~~~~~~Ifi~pps~e~l~~RL~~R~ 138 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKE---KFPERIVTIFIEPPSEEEWEERLIHRG 138 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEcCHHHHHHHHH---hCCCCeEEEEEECCCHHHHHHHHHhcC
Confidence 112222222234788999976555555443 22222267888885 688999999885
No 108
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.06 E-value=5.6e-09 Score=85.42 Aligned_cols=138 Identities=19% Similarity=0.199 Sum_probs=78.4
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--cEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHH
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVK 153 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~---~~--~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 153 (284)
....++.+|+++|.+||||||+|..|.+++ |. .++| +|-+|..+..+-....+-+. ++ -..+..+.
T Consensus 18 ~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LD-GDnvR~gL~~dLgFs~edR~--en------iRRvaevA 88 (197)
T COG0529 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLD-GDNVRHGLNRDLGFSREDRI--EN------IRRVAEVA 88 (197)
T ss_pred HhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEec-ChhHhhcccCCCCCChHHHH--HH------HHHHHHHH
Confidence 345567899999999999999999999987 43 3444 77888765542222111000 00 00111122
Q ss_pred HHhcCCCCCCCeEEEeCccc----CHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC-CCCCCCCcee-----eccCC
Q 023307 154 ERLSQPDSQENGWLLDGYPR----SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR-RLDPVTGKIY-----HVKYS 223 (284)
Q Consensus 154 ~~i~~~~~~~~g~IlDg~p~----~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R-~~~~~~g~~~-----~~~~~ 223 (284)
..+.. ...++|-.|-. .++++..+... ...+-||++||.++|.+|--+- +.....|.+. +..|+
T Consensus 89 kll~d----aG~iviva~ISP~r~~R~~aR~~~~~--~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE 162 (197)
T COG0529 89 KLLAD----AGLIVIVAFISPYREDRQMARELLGE--GEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYE 162 (197)
T ss_pred HHHHH----CCeEEEEEeeCccHHHHHHHHHHhCc--CceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCC
Confidence 22222 34556655333 33444433322 3568899999999999993221 0011224443 33788
Q ss_pred CCCchHHh
Q 023307 224 PPETDEIA 231 (284)
Q Consensus 224 ~p~~~~~~ 231 (284)
+|..+++.
T Consensus 163 ~P~~Pel~ 170 (197)
T COG0529 163 APENPELH 170 (197)
T ss_pred CCCCCeeE
Confidence 99888764
No 109
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.05 E-value=2.1e-09 Score=91.87 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcC--CCcChHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG--QLVPDEIVVTMVKERL 156 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~i 156 (284)
.++.+|.|.|++||||||+++.|++.+ .+.+++.|+....... ...........+ .....+.+.+.+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 79 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSH----LSFEERVKTNYDHPDAFDHDLLIEHLKALK 79 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCccc----CCHHHhcccCccCcccccHHHHHHHHHHHH
Confidence 467899999999999999999999998 3566787776542110 000000000000 0011111222221111
Q ss_pred cCC--------------------CCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 157 SQP--------------------DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 157 ~~~--------------------~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
... ......+|+||...... ..+. ..+|.+|||++|.+++++|...|.
T Consensus 80 ~~~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~--~~~~---~~~d~~I~v~~~~~~~~~R~~~Rd 147 (209)
T PRK05480 80 AGKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLED--ERLR---DLMDIKIFVDTPLDIRLIRRLKRD 147 (209)
T ss_pred cCCccccCcccccccccCCCeEEeCCCCEEEEEeehhcCc--hhHh---hhhceeEEEeCChhHHHHHHHhhc
Confidence 000 01124688898532110 1111 247899999999999999999885
No 110
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.04 E-value=2.3e-09 Score=91.67 Aligned_cols=118 Identities=21% Similarity=0.272 Sum_probs=66.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CcEeehhHHHHHHHHcCCcchHHHHHHHHcC----CCcChHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKG----QLVPDEIVVTMVK 153 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~---~~~is~ddlir~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~l~ 153 (284)
++++.+|+|.|++||||||+++.|+..++ +.+++.|+.+...... . ........ ...+.+.+.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~l~~~l~ 76 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHL--E----MAERKKTNFDHPDAFDNDLLYEHLK 76 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhC--C----HHHhcCCCCCCccHhHHHHHHHHHH
Confidence 46678999999999999999999998875 5667776654321000 0 00000000 0000111111111
Q ss_pred HHhcC--------------------CCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 154 ERLSQ--------------------PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 154 ~~i~~--------------------~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
..... ......-||+||.+.... +.+. ...+.+|||+++.++++.|+..|.
T Consensus 77 ~l~~g~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~--~~~~---~~~d~~I~v~~~~~~~l~R~~~R~ 147 (207)
T TIGR00235 77 NLKNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFD--ERLR---DLMDLKIFVDTPLDIRLIRRIERD 147 (207)
T ss_pred HHHCCCCEecccceeecCCCCCceEEeCCCCEEEEEehhhhch--HhHH---HhCCEEEEEECChhHHHHHHHHHH
Confidence 11100 001235689998644322 1222 247899999999999999998884
No 111
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.03 E-value=1.7e-09 Score=84.50 Aligned_cols=109 Identities=21% Similarity=0.300 Sum_probs=55.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHH-cCCcchHHHHHHHHcCCCcChHH---HHHHHHHHhcCCCCC
Q 023307 87 IMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPDEI---VVTMVKERLSQPDSQ 162 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~-~~~~~~~~~~~~~~~g~~~~~~~---~~~~l~~~i~~~~~~ 162 (284)
|+|.|+|||||||+|+.|+++++ +.+..... .+......-............+. +...+..... ....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG-------DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR-RMNK 72 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC-------HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH-HHTT
T ss_pred CEEECCCCCCHHHHHHHHHHHHC-------cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc-cccc
Confidence 78999999999999999999982 22222111 11111100000011112222222 2222222221 1123
Q ss_pred CCeEEEeCcccCHHHHHHHHHcCCCCcEE-EEEEcCHHHHHHHHHcCCC
Q 023307 163 ENGWLLDGYPRSLSQATALKKYGFQPDLF-ILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~~~~~~~v-I~L~~~~e~~~~Rl~~R~~ 210 (284)
+..+|+|+....... ....... |+|+|+++++.+|+..|..
T Consensus 73 ~~~~iid~~~~~~~~-------~~~~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 73 GRNIIIDGILSNLEL-------ERLFDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp TSCEEEEESSEEECE-------TTEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred CCcEEEecccchhcc-------cccceeeEEEEECCHHHHHHHHHhCCC
Confidence 578899985322210 0012223 9999999999999999963
No 112
>PRK06696 uridine kinase; Validated
Probab=99.03 E-value=2.4e-09 Score=92.65 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=33.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcE--eehhHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY---GLVH--IAAGDLLRA 121 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~---~~~~--is~ddlir~ 121 (284)
..++.+|+|.|++||||||+|+.|++.+ |..+ +++|++...
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 4568899999999999999999999998 5544 457777644
No 113
>PRK07667 uridine kinase; Provisional
Probab=99.01 E-value=6.9e-09 Score=87.78 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=68.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHHHc---CCc-ch---------HHHH-HH---HH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAA---GSE-NG---------KRAK-EH---ME 138 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir~~~~~---~~~-~~---------~~~~-~~---~~ 138 (284)
.....+|.|.|++||||||+|+.|++.++ +.++++|+.+...... +.. .. ..+. .. +.
T Consensus 14 ~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~ 93 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQ 93 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhc
Confidence 44558999999999999999999999873 5688999877654321 111 00 0000 00 01
Q ss_pred cCCCcChHHHHHHHHHHhcCC--CCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 139 KGQLVPDEIVVTMVKERLSQP--DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 139 ~g~~~~~~~~~~~l~~~i~~~--~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+..+.--.+........... ......+|+||..... ..+. ...|.+|++++|.+++++|+.+|.
T Consensus 94 ~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l~~---~~~~---~~~d~~v~V~~~~~~~~~R~~~r~ 160 (193)
T PRK07667 94 NETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFLQR---KEWR---DFFHYMVYLDCPRETRFLRESEET 160 (193)
T ss_pred CCCeEEEeeeccccccccccceecCCCCEEEEEehhhhh---hhHH---hhceEEEEEECCHHHHHHHHhccc
Confidence 110000000000000000000 1123678889843211 1122 247899999999999999999874
No 114
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.00 E-value=3.6e-09 Score=101.66 Aligned_cols=102 Identities=18% Similarity=0.199 Sum_probs=74.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
...+.+|++.|+|||||||+|+.+++..|+.+++.|++-. .......+.+.|.
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------------~~~~~~~a~~~L~--- 418 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------------TQNCLTACERALD--- 418 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------------HHHHHHHHHHHHh---
Confidence 3567899999999999999999999999999999876521 0112333444444
Q ss_pred CCCCeEEEeCcccCH---HHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 161 SQENGWLLDGYPRSL---SQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~---~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
.++.+|+|...... ..+..+.+....+..++|+++|.+++++|...|..
T Consensus 419 -~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 419 -QGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred -CCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 37889999844443 33334444444567899999999999999999865
No 115
>PLN02348 phosphoribulokinase
Probab=98.97 E-value=7.2e-09 Score=95.55 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.4
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
....++.+|.|.|++||||||+++.|++.++
T Consensus 44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3346778999999999999999999999986
No 116
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.97 E-value=4.8e-09 Score=89.22 Aligned_cols=140 Identities=22% Similarity=0.266 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHH---cCCc----chHHHHHHHHcCCCcCh-----HH---
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA---AGSE----NGKRAKEHMEKGQLVPD-----EI--- 147 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~---~~~~----~~~~~~~~~~~g~~~~~-----~~--- 147 (284)
.+.+|+|+|++||||||+++.|++.++..++......+.... .+.+ ....+......+.++.. ..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 456899999999999999999999875333322222111100 0111 01223333333322211 00
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCc
Q 023307 148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPET 227 (284)
Q Consensus 148 ~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~ 227 (284)
....+...+. .+..+|+|..+... ..+.........++++.++.+++.+|+..|+
T Consensus 84 ~~~~i~~~l~----~g~~vi~dl~~~g~---~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~------------------ 138 (205)
T PRK00300 84 PRSPVEEALA----AGKDVLLEIDWQGA---RQVKKKMPDAVSIFILPPSLEELERRLRGRG------------------ 138 (205)
T ss_pred cHHHHHHHHH----cCCeEEEeCCHHHH---HHHHHhCCCcEEEEEECcCHHHHHHHHHhcC------------------
Confidence 1122333332 36678888754333 3333332233335555677889999999885
Q ss_pred hHHhhhhcccCCCCHHHHHHHHHHHHHhHHH
Q 023307 228 DEIAARLTKRFDDTEEKVKLRLKTHHHNVEA 258 (284)
Q Consensus 228 ~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~ 258 (284)
+++.+.+++|+..+......
T Consensus 139 -----------~~~~~~i~~rl~~~~~~~~~ 158 (205)
T PRK00300 139 -----------TDSEEVIARRLAKAREEIAH 158 (205)
T ss_pred -----------CCCHHHHHHHHHHHHHHHHh
Confidence 24567788888877765543
No 117
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.97 E-value=3.2e-09 Score=88.42 Aligned_cols=136 Identities=22% Similarity=0.241 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHc---CCc----chHHHHHHHHcCCCcChH--------HHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA---GSE----NGKRAKEHMEKGQLVPDE--------IVV 149 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~---~~~----~~~~~~~~~~~g~~~~~~--------~~~ 149 (284)
.+|+|+||+||||||+++.|++.++..++......+..... +.. ....+...+..+.++... ...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 57999999999999999999987654444332222221110 000 012233333333332211 011
Q ss_pred HHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchH
Q 023307 150 TMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDE 229 (284)
Q Consensus 150 ~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~ 229 (284)
..+...+. .+..+|+|..+. .+..+......+..++++..+.+.+.+|+..|+
T Consensus 82 ~~i~~~~~----~g~~vi~d~~~~---~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~-------------------- 134 (180)
T TIGR03263 82 SPVEEALA----AGKDVLLEIDVQ---GARQVKKKFPDAVSIFILPPSLEELERRLRKRG-------------------- 134 (180)
T ss_pred HHHHHHHH----CCCeEEEECCHH---HHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC--------------------
Confidence 22333333 367788986432 333344333344456666778899999999885
Q ss_pred HhhhhcccCCCCHHHHHHHHHHHHHhH
Q 023307 230 IAARLTKRFDDTEEKVKLRLKTHHHNV 256 (284)
Q Consensus 230 ~~~~l~~r~~~~~~~i~~rl~~~~~~~ 256 (284)
+++.+.+++|+..+..+.
T Consensus 135 ---------~~~~~~i~~rl~~~~~~~ 152 (180)
T TIGR03263 135 ---------TDSEEVIERRLAKAKKEI 152 (180)
T ss_pred ---------CCCHHHHHHHHHHHHHHH
Confidence 345667888887665443
No 118
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.97 E-value=2.1e-08 Score=81.25 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=70.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHHHc-CCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~-~~~~is~ddlir~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
+++++|+|.||+||||+++.+.+.+ +..+++.++++-+.... |.. ..++.+. -++.+....+...+......
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glv---e~rD~~R---klp~e~Q~~lq~~Aa~rI~~ 77 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLV---EHRDEMR---KLPLENQRELQAEAAKRIAE 77 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCc---ccHHHHh---cCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999988 88889999988775432 111 1111222 22344433333332222211
Q ss_pred CCCeEEEeCccc-----C-HHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHc
Q 023307 162 QENGWLLDGYPR-----S-LSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (284)
Q Consensus 162 ~~~g~IlDg~p~-----~-~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 207 (284)
....+|+|.+.. . +.-.-.|.-.-+.|+.++.|.++++.+..|..+
T Consensus 78 ~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~ 129 (189)
T COG2019 78 MALEIIVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLR 129 (189)
T ss_pred hhhceEEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhc
Confidence 122388885211 0 000001111124699999999999998887665
No 119
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.95 E-value=5.9e-09 Score=84.77 Aligned_cols=107 Identities=20% Similarity=0.190 Sum_probs=58.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH--HHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV--TMVKER 155 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~l~~~ 155 (284)
++.+|+|+|.+||||||+|+.|.+++ ...+++ +|.++..+..+-.....-+. +.+. ..+...
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD-gD~lR~~l~~dl~fs~~dR~----------e~~rr~~~~A~l 69 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD-GDNLRHGLNADLGFSKEDRE----------ENIRRIAEVAKL 69 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE-HHHHCTTTTTT--SSHHHHH----------HHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec-CcchhhccCCCCCCCHHHHH----------HHHHHHHHHHHH
Confidence 46799999999999999999999987 345666 55555533322111111000 0111 111122
Q ss_pred hcCCCCCCCeEEEeCcccCH---HHHHHHHHcCCCCcEEEEEEcCHHHHHHHH
Q 023307 156 LSQPDSQENGWLLDGYPRSL---SQATALKKYGFQPDLFILLEVPEDTLVERV 205 (284)
Q Consensus 156 i~~~~~~~~g~IlDg~p~~~---~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 205 (284)
+.. ++..+|+....... ++++..... ...+.|||+||.++|.+|-
T Consensus 70 l~~---~G~ivIva~isp~~~~R~~~R~~~~~--~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 70 LAD---QGIIVIVAFISPYREDREWARELIPN--ERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHH---TTSEEEEE----SHHHHHHHHHHHHT--TEEEEEEEES-HHHHHHHT
T ss_pred HHh---CCCeEEEeeccCchHHHHHHHHhCCc--CceEEEEeCCCHHHHHHhC
Confidence 222 35667777532222 333333321 1568999999999999994
No 120
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.94 E-value=3.8e-09 Score=88.75 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCcEeehhHHHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRA 121 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~-~~~~is~ddlir~ 121 (284)
+|+|.|++||||||+|+.|++.+ ++.++++|+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 48999999999999999999998 7899999988764
No 121
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.91 E-value=7.3e-08 Score=81.77 Aligned_cols=111 Identities=11% Similarity=0.115 Sum_probs=61.0
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcCh--HHHHHH
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPD--EIVVTM 151 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~ 151 (284)
....++.+|+|+|.+||||||+++.|+..+ +..+++.|++- ..+.... + +.+. ......
T Consensus 19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~-~~~~~~~------------~-~~~~~~~~~~~~ 84 (198)
T PRK03846 19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR-HGLCSDL------------G-FSDADRKENIRR 84 (198)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH-hhhhhcC------------C-cCcccHHHHHHH
Confidence 344677899999999999999999999876 34666644443 3221110 0 0111 111112
Q ss_pred HHHHhcCCCCCCCeEEEeCccc-CHHHHHHHHHcCCCCc-EEEEEEcCHHHHHHH
Q 023307 152 VKERLSQPDSQENGWLLDGYPR-SLSQATALKKYGFQPD-LFILLEVPEDTLVER 204 (284)
Q Consensus 152 l~~~i~~~~~~~~g~IlDg~p~-~~~q~~~l~~~~~~~~-~vI~L~~~~e~~~~R 204 (284)
+.+........+. +|+..+.. ...+.+.+........ ++|||++|.+++.+|
T Consensus 85 l~~~a~~~~~~G~-~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R 138 (198)
T PRK03846 85 VGEVAKLMVDAGL-VVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR 138 (198)
T ss_pred HHHHHHHHhhCCC-EEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc
Confidence 2111111222244 44444443 2344444444322233 479999999999999
No 122
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.90 E-value=2.3e-08 Score=88.80 Aligned_cols=113 Identities=20% Similarity=0.175 Sum_probs=59.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ 158 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~ 158 (284)
|+.|+|+|.|||||||+|+.|++.+ .+.+++ ++.+. +.... +... -.+......++..+..
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~-~~~~~--~~~~~-y~~~----------~~Ek~~R~~l~s~v~r 66 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS-DDSLG--IDRND-YADS----------KKEKEARGSLKSAVER 66 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE--THHHH---TTSS-S--G----------GGHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc-ccccc--cchhh-hhch----------hhhHHHHHHHHHHHHH
Confidence 3689999999999999999999875 334565 33332 11111 1100 0112222233333332
Q ss_pred CCCCCCeEEEeCcccC---HHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 159 PDSQENGWLLDGYPRS---LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 159 ~~~~~~g~IlDg~p~~---~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
.......||+|+.... +.++-.+.+.......+||++++.+.|++|-.+|..
T Consensus 67 ~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~ 121 (270)
T PF08433_consen 67 ALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE 121 (270)
T ss_dssp HHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-
T ss_pred hhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC
Confidence 2233578999983222 233334444555678999999999999999999964
No 123
>COG0645 Predicted kinase [General function prediction only]
Probab=98.90 E-value=4.3e-08 Score=79.86 Aligned_cols=121 Identities=22% Similarity=0.233 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChH--HHHHHHHHHhcCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE--IVVTMVKERLSQPDSQ 162 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~l~~~i~~~~~~ 162 (284)
..+++.|.||+||||+|+.|++.+|..+|..|++-+.... .+... -...|.+.+.. -+...+...-......
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g--~p~~~----r~~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG--VPEET----RGPAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC--Ccccc----cCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999996666554322 00000 00122222211 1122222111112224
Q ss_pred CCeEEEeCccc---CHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCC
Q 023307 163 ENGWLLDGYPR---SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLD 211 (284)
Q Consensus 163 ~~g~IlDg~p~---~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~ 211 (284)
+..+|+|+..- ..+.+..+......+...|.++++.+++..|+..|..+
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d 127 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGD 127 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCC
Confidence 78999998322 23333333333334567899999999999999999753
No 124
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.90 E-value=1.1e-08 Score=86.66 Aligned_cols=35 Identities=34% Similarity=0.399 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLR 120 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir 120 (284)
+|.|.|++||||||+++.|+..+ ++.+++.|+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 48999999999999999999987 467888887653
No 125
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.89 E-value=1.2e-07 Score=79.27 Aligned_cols=110 Identities=11% Similarity=0.076 Sum_probs=64.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChH--HHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE--IVVTMVK 153 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~l~ 153 (284)
...+.+|+|+|++||||||+++.|+..+ | ..+++.| .++..+..+... .+.+ .....+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d-~~r~~l~~~~~~-------------~~~~~~~~~~~~~ 80 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGD-NVRHGLNKDLGF-------------SEEDRKENIRRIG 80 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCh-HHHhhhccccCC-------------CHHHHHHHHHHHH
Confidence 3556899999999999999999999886 2 4566644 444332211111 1111 0111111
Q ss_pred HHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCC-CCcEEEEEEcCHHHHHHH
Q 023307 154 ERLSQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVER 204 (284)
Q Consensus 154 ~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~-~~~~vI~L~~~~e~~~~R 204 (284)
.........+..+|+|.......+...+..... .+..+|||++|.+++.+|
T Consensus 81 ~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 81 EVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 111122234788899874333444444444321 245789999999999999
No 126
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.89 E-value=3.2e-08 Score=85.21 Aligned_cols=39 Identities=31% Similarity=0.518 Sum_probs=36.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~ 122 (284)
+++|.|.|++||||||+++.|++++++.+++.+++++..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 368999999999999999999999999999999988765
No 127
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.88 E-value=3.1e-08 Score=88.62 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=72.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCc------ch----HHHH---------HHHHcCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSE------NG----KRAK---------EHMEKGQL 142 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~------~~----~~~~---------~~~~~g~~ 142 (284)
..|++|+|.|++||||||+|..|+++||+.++-..|.+++.+..-.. .. .... +..-.|..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~ 169 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE 169 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence 46789999999999999999999999999844336666655442100 00 0000 00000111
Q ss_pred cChHHHHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEE-cCHHHHHHHHHcCCC
Q 023307 143 VPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLE-VPEDTLVERVVGRRL 210 (284)
Q Consensus 143 ~~~~~~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~-~~~e~~~~Rl~~R~~ 210 (284)
..-+.+...+...|......+..+|++|..-....++.+...+.. .+.++|. .+.+...+|+..|..
T Consensus 170 ~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~~~-~i~~~l~i~~ee~h~~RF~~R~~ 237 (301)
T PRK04220 170 RHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLENPN-VFMFVLTLSDEEAHKARFYARAR 237 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhcCCC-EEEEEEEECCHHHHHHHHHHHHh
Confidence 111112222333333333357899999965555555554433322 2344555 456889999988853
No 128
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.86 E-value=4.9e-09 Score=90.80 Aligned_cols=40 Identities=33% Similarity=0.591 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~ 122 (284)
..++|.|.|++||||||+++.|+++||+.+++.++++|..
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~ 42 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAV 42 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHH
Confidence 3579999999999999999999999999999999987763
No 129
>PTZ00301 uridine kinase; Provisional
Probab=98.86 E-value=9.5e-09 Score=88.00 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-------CcEeehhHHHHHHHHcCCcchHHHHHHHHcC--CCcChHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLLRAEIAAGSENGKRAKEHMEKG--QLVPDEIVVTMVK 153 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~-------~~~is~ddlir~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~ 153 (284)
+.++|.|.|+|||||||+|+.|++.++ +.++..|+..+.... ...........+ .....+.+.+.+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~----~~~~~~~~~~~d~p~a~D~~~l~~~l~ 77 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSN----IPESERAYTNYDHPKSLEHDLLTTHLR 77 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCccc----CCHHHhcCCCCCChhhhCHHHHHHHHH
Confidence 347999999999999999999987762 335666766543210 000000000000 0001111222221
Q ss_pred HHhcC-----C---------------CCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 154 ERLSQ-----P---------------DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 154 ~~i~~-----~---------------~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
..... . .....-+|+||+..... ..+.. ..|+.|||+++.++++.|...|.
T Consensus 78 ~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~--~~l~~---l~D~~ifvd~~~d~~~~Rr~~Rd 148 (210)
T PTZ00301 78 ELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTN--AELRN---EMDCLIFVDTPLDICLIRRAKRD 148 (210)
T ss_pred HHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCC--HHHHH---hCCEEEEEeCChhHHHHHHHhhh
Confidence 11100 0 01135677899533111 12222 36789999999999999999986
No 130
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.86 E-value=2.3e-08 Score=82.23 Aligned_cols=121 Identities=24% Similarity=0.297 Sum_probs=76.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH-----------H
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV-----------T 150 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ 150 (284)
.++..|++.|..+|||||+|..|.+.+. ..++ ...+...-+.-+..|+.+..++.+...+++..++ .
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~-~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLD-PAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccC-hHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 4567899999999999999999988872 2222 1122222223456777777777766655554332 3
Q ss_pred HHHHHhcCCCCCCCeEEEeCcccC-----------HHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 151 MVKERLSQPDSQENGWLLDGYPRS-----------LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 151 ~l~~~i~~~~~~~~g~IlDg~p~~-----------~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
++++.+. ++..+|+|.|... +++.......-.+||+|+||+++++. ..|..+++
T Consensus 81 ~i~e~l~----kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~-~a~rggfG 145 (208)
T KOG3327|consen 81 LIKEKLA----KGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPED-AARRGGFG 145 (208)
T ss_pred HHHHHHh----cCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHH-HHHhcCcc
Confidence 3444444 3677999975321 12222223344689999999999999 55555554
No 131
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.85 E-value=4.4e-08 Score=79.43 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=61.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CC--cEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 86 KIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~---~~--~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
+|+|+|.|||||||+|+.|++.+ +. .+++ .|.++..+......... ......+.+........
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~-~d~~r~~l~~~~~~~~~-----------~~~~~~~~~~~~a~~l~ 68 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD-GDNVRHGLNKDLGFSRE-----------DREENIRRIAEVAKLLA 68 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc-CHHHHHhhhhccCCCcc-----------hHHHHHHHHHHHHHHHH
Confidence 47899999999999999999988 54 4455 34444433221100000 00111111221111122
Q ss_pred CCCCeEEEeCcccCHHHHHHHHHcC-CCCcEEEEEEcCHHHHHHHHHc
Q 023307 161 SQENGWLLDGYPRSLSQATALKKYG-FQPDLFILLEVPEDTLVERVVG 207 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~~~-~~~~~vI~L~~~~e~~~~Rl~~ 207 (284)
..+..+|+|.......+...+.... ..+..++||++|.+++.+|..+
T Consensus 69 ~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 69 DAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred hCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 2367888887433333333333221 2466789999999999999644
No 132
>PHA03132 thymidine kinase; Provisional
Probab=98.85 E-value=1.6e-07 Score=90.84 Aligned_cols=127 Identities=15% Similarity=0.136 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCC---CcChHHHH----------
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ---LVPDEIVV---------- 149 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~---------- 149 (284)
..++|+|.|+.|+||||+++.|++.+|..++-+.+-......-....+..+.+.+.++. ......+.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~Vi~t~EP~~~W~~vy~n~l~~I~~~~~r~~~g~~s~~~ella~Ql~FA~Pf 335 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDNVLVFPEPMRYWTEVYSNCLKEIYKLVKPGKHGKTSTSAKLLACQMKFATPF 335 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCceEEEeCCCCchhhccccHHHHHHHHHhcccccCCCHHHHHHHHHHHHhhHH
Confidence 36899999999999999999999988544433211110000000122333444433221 11111111
Q ss_pred -------HHH---HHHhcCCCCCCCeEEEeCccc-CHH---------------H-HHHHHHcC-CCCcEEEEEEcCHHHH
Q 023307 150 -------TMV---KERLSQPDSQENGWLLDGYPR-SLS---------------Q-ATALKKYG-FQPDLFILLEVPEDTL 201 (284)
Q Consensus 150 -------~~l---~~~i~~~~~~~~g~IlDg~p~-~~~---------------q-~~~l~~~~-~~~~~vI~L~~~~e~~ 201 (284)
+.+ ...+......+..+|+|.++. ... . +..+.... ..||++|||+++++++
T Consensus 336 l~~adR~~~~~~~~~~i~p~l~~g~iVI~DRyi~Ss~avF~~~~y~~G~ls~~e~~~lL~~~~~~~PDLiIyLdv~pe~a 415 (580)
T PHA03132 336 RALATRTRRLVQPESVRRPVAPLDNWVLFDRHLLSATVVFPLMHLRNGMLSFSHFIQLLSTFRAHEGDVIVLLKLNSEEN 415 (580)
T ss_pred HHHHHHHHHHHhhhhhccccccCCCEEEEecCccccHHHHHHhccccccCCHHHHHHHHHHhcccCCCEEEEEeCCHHHH
Confidence 011 011111223467889997432 111 1 22222222 3589999999999999
Q ss_pred HHHHHcCC
Q 023307 202 VERVVGRR 209 (284)
Q Consensus 202 ~~Rl~~R~ 209 (284)
++|+.+|+
T Consensus 416 lkRIkkRg 423 (580)
T PHA03132 416 LRRVKKRG 423 (580)
T ss_pred HHHHHhcC
Confidence 99999985
No 133
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.81 E-value=1e-08 Score=102.05 Aligned_cols=39 Identities=36% Similarity=0.468 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~ 122 (284)
.++|.|.||+||||||+++.|+++||+.+++.+.+++..
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 568999999999999999999999999999999999886
No 134
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.80 E-value=8.7e-08 Score=79.54 Aligned_cols=108 Identities=15% Similarity=0.195 Sum_probs=62.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH--HHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV--TMVKER 155 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~l~~~ 155 (284)
.+.+|+|+|+|||||||+++.|+..+. +.+++.|.+ +..+..+......-+ +..+. ..+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~-~~~~~~~~~~~~~~r----------~~~~~~~~~~a~~ 71 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV-RTNLSKGLGFSKEDR----------DTNIRRIGFVANL 71 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH-HHHHhcCCCCChhhH----------HHHHHHHHHHHHH
Confidence 457999999999999999999998872 566776544 333321111100000 00110 111221
Q ss_pred hcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHH
Q 023307 156 LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205 (284)
Q Consensus 156 i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 205 (284)
+.. .+..+++|+........+.+.... ....+|||+++.+++.+|.
T Consensus 72 ~~~---~g~~vi~~~~~~~~~~~~~l~~~~-~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 72 LTR---HGVIVLVSAISPYRETREEVRANI-GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHh---CCCEEEEecCCCCHHHHHHHHhhc-CCeEEEEEcCCHHHHHHhC
Confidence 211 255677776422333334444332 3457999999999999994
No 135
>PRK07429 phosphoribulokinase; Provisional
Probab=98.79 E-value=9.7e-08 Score=87.05 Aligned_cols=39 Identities=21% Similarity=0.311 Sum_probs=33.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CcEeehhHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLL 119 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~---~~~is~ddli 119 (284)
..++.+|.|+|++||||||+++.|++.++ +.++..|++.
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 35678999999999999999999999886 5677777764
No 136
>COG4639 Predicted kinase [General function prediction only]
Probab=98.78 E-value=5.1e-08 Score=78.21 Aligned_cols=112 Identities=18% Similarity=0.113 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
..+++.|++||||||+++... ....+++++++-...-.. .+ +...++ .+..+.+.+...+.+...+|+
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~~---~~----~e~sqk---~~~~~~~~l~~~l~qrl~~Gk 70 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLGVS---AS----KENSQK---NDELVWDILYKQLEQRLRRGK 70 (168)
T ss_pred eEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhhhc---hh----hhhccc---cHHHHHHHHHHHHHHHHHcCC
Confidence 578999999999999998642 367788888875542110 00 111111 234445555555555555689
Q ss_pred eEEEeCcc---cCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 165 GWLLDGYP---RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 165 g~IlDg~p---~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
-.|+|... ..+.+...+........++|+++.|.+.|.+|-+.|
T Consensus 71 ~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 71 FTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred eEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 99999865 444555555555556677899999999999997644
No 137
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.77 E-value=2e-08 Score=83.26 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC--cEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcC--hHHHHHHHHHHhcCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP--DEIVVTMVKERLSQPD 160 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~--~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~l~~~i~~~~ 160 (284)
.+|+|.|++-|||||+|+.|.+.+.- .++++|.++..........+..+. ....+.... ...+...+...+....
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLE-PAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEE-EETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCcccc-ccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999954 566777777642221000000000 000000000 0112233334444333
Q ss_pred CCCCeEEEeCcccCHHH-HHHHHH-cCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 161 SQENGWLLDGYPRSLSQ-ATALKK-YGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q-~~~l~~-~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
..+..+|+|........ .+.+.+ ....+.++|-+.||.+++.+|-..|+.
T Consensus 81 ~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgD 132 (174)
T PF07931_consen 81 RAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGD 132 (174)
T ss_dssp HTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTS
T ss_pred hCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCC
Confidence 45889999975444332 344422 334567889999999999999999873
No 138
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.77 E-value=1.2e-08 Score=86.65 Aligned_cols=120 Identities=20% Similarity=0.316 Sum_probs=63.9
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCC-Cc----ChHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-LV----PDEIVVTM 151 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~-~~----~~~~~~~~ 151 (284)
....|..|++.|+|||||||++..+.+.+ ++.+|+.|++.... +....+........ .. ...+...+
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----p~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 85 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----PDYDELLKADPDEASELTQKEASRLAEKL 85 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----TTHHHHHHHHCCCTHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----cchhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999987 78889977763321 11111111000000 00 01122333
Q ss_pred HHHHhcCCCCCCCeEEEeCcccCHHHH----HHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 152 VKERLSQPDSQENGWLLDGYPRSLSQA----TALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 152 l~~~i~~~~~~~~g~IlDg~p~~~~q~----~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+...+.+ +..+|+|+........ +.+.+.|. ...++++.++++..+.|+..|.
T Consensus 86 ~~~a~~~----~~nii~E~tl~~~~~~~~~~~~~k~~GY-~v~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 86 IEYAIEN----RYNIIFEGTLSNPSKLRKLIREAKAAGY-KVELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp HHHHHHC----T--EEEE--TTSSHHHHHHHHHHHCTT--EEEEEEE---HHHHHHHHHHHH
T ss_pred HHHHHHc----CCCEEEecCCCChhHHHHHHHHHHcCCc-eEEEEEEECCHHHHHHHHHHHH
Confidence 4444443 6789999854443333 34554554 3567889999999999999884
No 139
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.76 E-value=1.8e-07 Score=88.04 Aligned_cols=43 Identities=23% Similarity=0.486 Sum_probs=35.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA 124 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~ 124 (284)
.+|.+|+|.|++|+||||++..|++++|+.++-..|.+++.+.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr 295 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLR 295 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHH
Confidence 4588999999999999999999999999985544666666443
No 140
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.75 E-value=5e-08 Score=89.05 Aligned_cols=142 Identities=17% Similarity=0.148 Sum_probs=75.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC------CcEeehhHHHHHHHH---cCCcc---hHHHHHH----H-------HcCCC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYG------LVHIAAGDLLRAEIA---AGSEN---GKRAKEH----M-------EKGQL 142 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~------~~~is~ddlir~~~~---~~~~~---~~~~~~~----~-------~~g~~ 142 (284)
+++|+|+|||||||+++.|++.+. +.+++.||++.+... .+.+. .+.++.. + ..|..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R~~i~~~le~~v~a~~~g~~ 80 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFRQELLKYLEHFLVAVINGSE 80 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 368999999999999999998775 348888998842211 11111 1111111 1 11211
Q ss_pred cCh------HHH---HHHH----------------HHHhc-CCCCCCCeEEEeCcccC---HHHHHHHHHcCCCCcEEEE
Q 023307 143 VPD------EIV---VTMV----------------KERLS-QPDSQENGWLLDGYPRS---LSQATALKKYGFQPDLFIL 193 (284)
Q Consensus 143 ~~~------~~~---~~~l----------------~~~i~-~~~~~~~g~IlDg~p~~---~~q~~~l~~~~~~~~~vI~ 193 (284)
... +.. ...+ ..++. .......-+|+|+-... +.++..+.........+||
T Consensus 81 ~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ 160 (340)
T TIGR03575 81 LSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLF 160 (340)
T ss_pred ccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 110 111 1111 01111 11112235788873222 2334444444445678999
Q ss_pred EEcCHHHHHHHHHcCCCCCC--CCceeeccCCCCCc
Q 023307 194 LEVPEDTLVERVVGRRLDPV--TGKIYHVKYSPPET 227 (284)
Q Consensus 194 L~~~~e~~~~Rl~~R~~~~~--~g~~~~~~~~~p~~ 227 (284)
|++|.+++++|..+|..... .-..+...|++|+.
T Consensus 161 ld~ple~~l~RN~~R~~~v~devie~m~~r~E~P~~ 196 (340)
T TIGR03575 161 LDCPVESCLLRNKQRPVPLPDETIQLMGRKIEKPNP 196 (340)
T ss_pred EeCCHHHHHHHHhcCCCCCCHHHHHHHHHHhcCCCC
Confidence 99999999999999963211 11223336666664
No 141
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.73 E-value=1.4e-08 Score=101.83 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~ 122 (284)
++|.|.|||||||||+|+.|++++|+.+++++.+++..
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 47999999999999999999999999999999998874
No 142
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.73 E-value=4.2e-08 Score=82.93 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
+|.|.|++||||||+|+.|++.++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999996
No 143
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.72 E-value=2.7e-07 Score=82.70 Aligned_cols=95 Identities=17% Similarity=0.287 Sum_probs=58.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCC-CC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP-DS 161 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~-~~ 161 (284)
.+.+|+|+|++||||||+++.|. ..|+.+++- +- -..+.+++ +.+... ..
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~--~~-------------------------~~L~~~l~-~~~~~~~~~ 55 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYCVDN--LP-------------------------PSLLPKLV-ELLAQSGGI 55 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeEECC--cC-------------------------HHHHHHHH-HHHHhcCCC
Confidence 34689999999999999999995 568887741 11 11111111 111111 11
Q ss_pred CCCeEEEeCccc-----CHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHc
Q 023307 162 QENGWLLDGYPR-----SLSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (284)
Q Consensus 162 ~~~g~IlDg~p~-----~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 207 (284)
..-.+++|.... ..+.+..+...+ ....+|||+++.+++.+|+..
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~~~g-~~~~iI~L~a~~e~L~~Rl~~ 105 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELRERG-IDVRVLFLDASDEVLIRRYSE 105 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHHHcC-CcEEEEEEECCHHHHHHHHhh
Confidence 134677776322 123344455543 345679999999999999975
No 144
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.71 E-value=9e-08 Score=93.39 Aligned_cols=111 Identities=12% Similarity=0.153 Sum_probs=64.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC------cEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL------VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKER 155 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~------~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 155 (284)
.++.+|+|+|.+||||||+|+.|++.++. .+++.| .++..+..+......-+ +.....+...
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D-~vr~~l~ge~~f~~~er-----------~~~~~~l~~~ 457 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGD-VVRKHLSSELGFSKEDR-----------DLNILRIGFV 457 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCc-HHHHhccCCCCCCHHHH-----------HHHHHHHHHH
Confidence 45679999999999999999999999986 778754 44553332111111000 1111111111
Q ss_pred hcCCCCCCCeEEEeC-cccC--HHHHHHH-HHcCCCCcEEEEEEcCHHHHHHHHH
Q 023307 156 LSQPDSQENGWLLDG-YPRS--LSQATAL-KKYGFQPDLFILLEVPEDTLVERVV 206 (284)
Q Consensus 156 i~~~~~~~~g~IlDg-~p~~--~~q~~~l-~~~~~~~~~vI~L~~~~e~~~~Rl~ 206 (284)
.......+.++|+|. +|.. ......+ .+.+ ...+|||+++.+++.+|..
T Consensus 458 a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g--~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 458 ASEITKNGGIAICAPIAPYRATRREVREMIEAYG--GFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC--CEEEEEEcCCHHHHHHhcc
Confidence 112223477888886 3322 2222222 2222 2368999999999999973
No 145
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.71 E-value=5e-07 Score=89.67 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=66.7
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHH
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVK 153 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~ 153 (284)
....++.+|+++|.|||||||+|+.|++++ ++.+++- |.++..+..+.......+ ....+.+.
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~-D~~r~~l~~~~~~~~~~r-----------~~~~~~l~ 522 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDG-DNVRHGLNRDLGFSDADR-----------VENIRRVA 522 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcC-hhhhhccCCCCCCCHHHH-----------HHHHHHHH
Confidence 344568999999999999999999999987 3467774 445553322111111000 01111111
Q ss_pred HHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCC-CCcEEEEEEcCHHHHHHHH
Q 023307 154 ERLSQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERV 205 (284)
Q Consensus 154 ~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~-~~~~vI~L~~~~e~~~~Rl 205 (284)
.........+..+|+|.......+.+.+.+... ....+|||+++.+.+.+|.
T Consensus 523 ~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 523 EVARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC
Confidence 111111223677888864323333344443322 2458999999999999994
No 146
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.71 E-value=4.5e-08 Score=84.49 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-------CcEeehhHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLL 119 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~-------~~~is~ddli 119 (284)
+|.|.|++||||||+|+.|+..+. +.++++|+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 478999999999999999998873 4567777764
No 147
>PLN02772 guanylate kinase
Probab=98.69 E-value=3.1e-08 Score=91.35 Aligned_cols=142 Identities=18% Similarity=0.238 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC-cEeehhHHHHHHH---HcCCcc----hHHHHHHHHcCCCcChHHHHHH---
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEI---AAGSEN----GKRAKEHMEKGQLVPDEIVVTM--- 151 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~-~~is~ddlir~~~---~~~~~~----~~~~~~~~~~g~~~~~~~~~~~--- 151 (284)
..+.|+|+||+|+||+||.++|.+.+.. ..+.+...-|... .++.++ ...+...+.+|.++....+...
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 4468999999999999999999886521 1111111111111 111111 1345555555555543321111
Q ss_pred -HHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHH
Q 023307 152 -VKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEI 230 (284)
Q Consensus 152 -l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~ 230 (284)
-++.+......++.+|+|-.+....+++.. ...+..++++..+.+++.+|+..|+
T Consensus 214 Tsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~---~l~~v~IFI~PPSlEeLe~RL~~RG--------------------- 269 (398)
T PLN02772 214 TSIEAVEVVTDSGKRCILDIDVQGARSVRAS---SLEAIFIFICPPSMEELEKRLRARG--------------------- 269 (398)
T ss_pred ccHHHHHHHHHhCCcEEEeCCHHHHHHHHHh---cCCeEEEEEeCCCHHHHHHHHHhcC---------------------
Confidence 122232222336788888766555544432 2233334444555788889988886
Q ss_pred hhhhcccCCCCHHHHHHHHHHHHHhH
Q 023307 231 AARLTKRFDDTEEKVKLRLKTHHHNV 256 (284)
Q Consensus 231 ~~~l~~r~~~~~~~i~~rl~~~~~~~ 256 (284)
.++++.+++||..+..+.
T Consensus 270 --------teseE~I~kRL~~A~~Ei 287 (398)
T PLN02772 270 --------TETEEQIQKRLRNAEAEL 287 (398)
T ss_pred --------CCCHHHHHHHHHHHHHHH
Confidence 345678888888775544
No 148
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.66 E-value=1.3e-07 Score=79.13 Aligned_cols=118 Identities=20% Similarity=0.309 Sum_probs=64.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC----cEeehhHHHHHHHHcCCcc----hHHHHHHHHcCCCcChH--------H
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGL----VHIAAGDLLRAEIAAGSEN----GKRAKEHMEKGQLVPDE--------I 147 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~----~~is~ddlir~~~~~~~~~----~~~~~~~~~~g~~~~~~--------~ 147 (284)
++.|+|+||+||||+|+++.|.+.+.- ++-.+..-.+....+|.+. ...+......|.++... .
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 467999999999999999999988742 2222333322211112211 13344444444433211 1
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcC-HHHHHHHHHcCC
Q 023307 148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVP-EDTLVERVVGRR 209 (284)
Q Consensus 148 ~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~-~e~~~~Rl~~R~ 209 (284)
....+...+.+ ++.+|+|..+. -+..+...... -++|||.++ .+.+.+|+..|+
T Consensus 82 ~~~~i~~~~~~----gk~~il~~~~~---g~~~L~~~~~~-~~~IfI~~~s~~~l~~~l~~r~ 136 (183)
T PF00625_consen 82 SKSAIDKVLEE----GKHCILDVDPE---GVKQLKKAGFN-PIVIFIKPPSPEVLKRRLRRRG 136 (183)
T ss_dssp EHHHHHHHHHT----TTEEEEEETHH---HHHHHHHCTTT-EEEEEEEESSHHHHHHHHHTTT
T ss_pred ccchhhHhhhc----CCcEEEEccHH---HHHHHHhcccC-ceEEEEEccchHHHHHHHhccc
Confidence 12333333433 67888886543 34445555433 356777555 677877777764
No 149
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.64 E-value=1e-07 Score=66.96 Aligned_cols=60 Identities=27% Similarity=0.332 Sum_probs=44.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 86 KIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
+|+|+|++||||||+++.|++.+ ++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 47899999999999999999984 3444421
Q ss_pred CCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEc
Q 023307 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEV 196 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~ 196 (284)
.+|+||+.....+.. ......+|..|||++
T Consensus 34 --~~I~eg~~~~~~~~~--~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 --IVILEGLYASYKSRD--ARIRDLADLKIYLDA 63 (69)
T ss_pred --EEEecchhhhhhhHH--hhccccccEEEEEEe
Confidence 899999765444322 333457899999987
No 150
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.61 E-value=5.8e-07 Score=77.99 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
..++.+|.|.|++||||||+++.|+..+.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45678999999999999999999998763
No 151
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.60 E-value=2.2e-07 Score=94.16 Aligned_cols=40 Identities=28% Similarity=0.542 Sum_probs=37.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~ 122 (284)
..++|.|.||+||||||+|+.||++|++.|++++.++|..
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 4469999999999999999999999999999999999986
No 152
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.59 E-value=4.4e-07 Score=80.84 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLL 119 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddli 119 (284)
+|.|+|++||||||+++.|+..+ +..++..|++.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 47899999999999999999876 45677777664
No 153
>PRK05439 pantothenate kinase; Provisional
Probab=98.59 E-value=1.4e-07 Score=85.19 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=33.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CcEeehhHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLLRA 121 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~-------~~~is~ddlir~ 121 (284)
...+.+|.|.|+|||||||+|+.|++.++ +.++++|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 45678999999999999999999998653 457888887643
No 154
>PRK15453 phosphoribulokinase; Provisional
Probab=98.56 E-value=2.7e-07 Score=81.72 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLR 120 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir 120 (284)
.++++|+|+|.|||||||+|+.|++.|+ ..+++.|+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4568999999999999999999998774 45677666554
No 155
>PLN02165 adenylate isopentenyltransferase
Probab=98.56 E-value=7.5e-07 Score=80.83 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=34.9
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
-+.++.+|+|+||+||||||++..|++.++..+++.|.+
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 345567999999999999999999999999999998877
No 156
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.54 E-value=2.5e-07 Score=77.37 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRA 121 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir~ 121 (284)
+|+|.|++||||||+|+.|++.+ +..++++|+..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 48999999999999999999986 4678999999874
No 157
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.54 E-value=5.7e-06 Score=73.27 Aligned_cols=102 Identities=21% Similarity=0.380 Sum_probs=63.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhc-CCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS-QPDSQ 162 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~-~~~~~ 162 (284)
+.+|+|+|.+||||||..+.| |.+|+.++| .+ |-..+.+++..... .....
T Consensus 1 m~~vIiTGlSGaGKs~Al~~l-ED~Gy~cvD--Nl-------------------------P~~Ll~~l~~~~~~~~~~~~ 52 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRAL-EDLGYYCVD--NL-------------------------PPSLLPQLIELLAQSNSKIE 52 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHH-HhcCeeEEc--CC-------------------------cHHHHHHHHHHHHhcCCCCc
Confidence 358999999999999999999 668999885 22 22222222221111 11112
Q ss_pred CCeEEEeCccc----CH-HHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHc-CCCCCCC
Q 023307 163 ENGWLLDGYPR----SL-SQATALKKYGFQPDLFILLEVPEDTLVERVVG-RRLDPVT 214 (284)
Q Consensus 163 ~~g~IlDg~p~----~~-~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~-R~~~~~~ 214 (284)
.-.+++|--.. .+ ..+..+.+.+ ....++||+|+++++++|... |+.||..
T Consensus 53 ~~Ai~iD~R~~~~~~~~~~~~~~l~~~~-~~~~ilFLdA~d~~LirRy~eTRR~HPL~ 109 (284)
T PF03668_consen 53 KVAIVIDIRSREFFEDLFEALDELRKKG-IDVRILFLDASDEVLIRRYSETRRRHPLS 109 (284)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcC-CceEEEEEECChHHHHHHHHhccCCCCCC
Confidence 34577775211 11 2223344443 456799999999999999985 6667654
No 158
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.50 E-value=4e-07 Score=73.51 Aligned_cols=153 Identities=15% Similarity=0.159 Sum_probs=86.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc--EeehhHHHHHHHHcCCcch-----HHHHHHHHcCCCcChHH-------H
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLV--HIAAGDLLRAEIAAGSENG-----KRAKEHMEKGQLVPDEI-------V 148 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~--~is~ddlir~~~~~~~~~~-----~~~~~~~~~g~~~~~~~-------~ 148 (284)
.+..|+|+||+|+||-|+.......+... +.=+-.++-.-...+.+.. .+|...-.+|.+.-.+. +
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 35789999999999999999998887321 1101122211111121111 22222222222111000 0
Q ss_pred HHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCch
Q 023307 149 VTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETD 228 (284)
Q Consensus 149 ~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~ 228 (284)
-..+.+.| ..+..+|..|....+.++.... ..-.++.|.++++++.+|+..|+
T Consensus 84 p~eId~wl----~~G~vvl~NgSRa~Lp~arrry----~~Llvv~ita~p~VLaqRL~~RG------------------- 136 (192)
T COG3709 84 PAEIDLWL----AAGDVVLVNGSRAVLPQARRRY----PQLLVVCITASPEVLAQRLAERG------------------- 136 (192)
T ss_pred chhHHHHH----hCCCEEEEeccHhhhHHHHHhh----hcceeEEEecCHHHHHHHHHHhc-------------------
Confidence 01122223 2367788888655666655444 24579999999999999999997
Q ss_pred HHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccc
Q 023307 229 EIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLS 277 (284)
Q Consensus 229 ~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~ 277 (284)
.++.+.|..||..-...... +.-+.+||..++.+
T Consensus 137 ----------REs~eeI~aRL~R~a~~~~~-----~~dv~~idNsG~l~ 170 (192)
T COG3709 137 ----------RESREEILARLARAARYTAG-----PGDVTTIDNSGELE 170 (192)
T ss_pred ----------cCCHHHHHHHHHhhcccccC-----CCCeEEEcCCCcHH
Confidence 36677888888532211110 34578888877764
No 159
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.49 E-value=3.1e-07 Score=82.25 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=30.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CcEeehhHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDLLR 120 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~-------~~~is~ddlir 120 (284)
...+.+|.|.|++||||||+++.|...+. +.++++|+...
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 35678999999999999999998876553 44567676543
No 160
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.45 E-value=3.8e-07 Score=78.50 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=76.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-----cEeehhHHHHHHHHcCC---------cchHHHHHHHHcCCCcChHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGS---------ENGKRAKEHMEKGQLVPDEI 147 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~-----~~is~ddlir~~~~~~~---------~~~~~~~~~~~~g~~~~~~~ 147 (284)
..+.+|+++|.||.|||++|+.|+..++| .++++++.-|....... ..+..+++.+. ..
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a-------~~ 82 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIA-------KE 82 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHH-------HH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHH-------HH
Confidence 45678999999999999999999987743 67899998888665411 11111111110 11
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCC
Q 023307 148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYS 223 (284)
Q Consensus 148 ~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~ 223 (284)
..+-+...+.. ..++..|+|+...+.+..+.+.+ .+ ...++|..-|+++.++++-...... .
T Consensus 83 ~l~dl~~~l~~--~~G~VAI~DATN~T~~RR~~l~~~~~~~~-~~vlFIEsic~D~~ii~~NI~~~~~-----------~ 148 (222)
T PF01591_consen 83 ALEDLIEWLQE--EGGQVAIFDATNSTRERRKMLVERFKEHG-IKVLFIESICDDPEIIERNIREKKQ-----------N 148 (222)
T ss_dssp HHHHHHHHHHT--S--SEEEEES---SHHHHHHHHHHHHHTT--EEEEEEEE---HHHHHHHHHHHHT-----------T
T ss_pred HHHHHHHHHhc--CCCeEEEEeCCCCCHHHHHHHHHHHHHcC-CcEEEEEEEeCCHHHHHHHHHHHHc-----------C
Confidence 12222333332 23678999997777766555443 33 2334555667777666654433210 0
Q ss_pred CCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHH
Q 023307 224 PPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVL 260 (284)
Q Consensus 224 ~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~ 260 (284)
-|+..+ ...++..+.+.+|++.|...|+++-
T Consensus 149 spDY~~------~~~e~A~~Df~~RI~~Ye~~YEpl~ 179 (222)
T PF01591_consen 149 SPDYKG------MDPEEAIEDFKKRIEHYEKVYEPLD 179 (222)
T ss_dssp SGGGTT------S-HHHHHHHHHHHHHHHHTT-----
T ss_pred Cccccc------CCHHHHHHHHHHHHHhhcccccccc
Confidence 011000 0111234567889999999999987
No 161
>PHA00729 NTP-binding motif containing protein
Probab=98.44 E-value=2e-06 Score=74.00 Aligned_cols=111 Identities=11% Similarity=0.032 Sum_probs=63.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc--EeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV--HIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~--~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~ 159 (284)
.....|+|+|+||+||||+|..|+++++.. .++.++... .. ......++.+.+.+.+.......
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~---d~-----------~~~~~fid~~~Ll~~L~~a~~~~ 80 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAW---QY-----------VQNSYFFELPDALEKIQDAIDND 80 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHH---hc-----------CCcEEEEEHHHHHHHHHHHHhcC
Confidence 344689999999999999999999987522 222121100 00 00111223333444444433221
Q ss_pred CCCCCeEEEeCcccCHH--------------HHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 160 DSQENGWLLDGYPRSLS--------------QATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 160 ~~~~~g~IlDg~p~~~~--------------q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
....-+|||++--... ....+. -.++.++++.++++.+.+++.+|+.
T Consensus 81 -~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLr---SR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 81 -YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIR---TRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred -CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHH---hhCcEEEEecCCHHHHHHHHHhCCC
Confidence 1123469998221110 111121 1377899999999999999999875
No 162
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.42 E-value=6.3e-06 Score=71.28 Aligned_cols=46 Identities=26% Similarity=0.436 Sum_probs=39.4
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHc
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA 125 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~ 125 (284)
..+.|.+|+|-|++|+||||+|..||.++|+..+--.|.+|+.+..
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ 130 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRK 130 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHH
Confidence 4456888999999999999999999999999887778888887654
No 163
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.28 E-value=2.4e-06 Score=71.42 Aligned_cols=116 Identities=17% Similarity=0.228 Sum_probs=58.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHc-CCc------chHHH--HHH---HHcC-------CCcChH
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSE------NGKRA--KEH---MEKG-------QLVPDE 146 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~-~~~------~~~~~--~~~---~~~g-------~~~~~~ 146 (284)
+|.|.|..|||++++|+.||+++|+++++- +++.+.... +-+ ..+.. ..+ +..+ ....++
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 689999999999999999999999999984 666554332 100 01111 111 1111 111122
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 147 IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 147 ~~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+.....+.|.+... ..++|+.|.- . .++. .+....+-|+|.+|.+..++|+++|.
T Consensus 80 ~~~~~~~~~i~~la~-~~~~Vi~GR~--a---~~il-~~~~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 80 KIFRAQSEIIRELAA-KGNCVIVGRC--A---NYIL-RDIPNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp HHHHHHHHHHHHHHH----EEEESTT--H---HHHT-TT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCCEEEEecC--H---hhhh-CCCCCeEEEEEECCHHHHHHHHHHHc
Confidence 233333333333322 3567777732 1 1111 11234678999999999999999883
No 164
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.27 E-value=2.8e-06 Score=74.82 Aligned_cols=35 Identities=14% Similarity=0.285 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLR 120 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir 120 (284)
+|.|+|++||||||+++.|.+.|+ +.+++.|+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 489999999999999999998773 45777776665
No 165
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.21 E-value=1.4e-05 Score=66.88 Aligned_cols=122 Identities=19% Similarity=0.239 Sum_probs=73.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHHHcCCcc-----------------hHHHHHHHHcCCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSEN-----------------GKRAKEHMEKGQLV 143 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-~~~~is~ddlir~~~~~~~~~-----------------~~~~~~~~~~g~~~ 143 (284)
++..+|.|.|.+.|||||||+.|...| |..+|+-||.++..-+-.... ...+...+......
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~ 81 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNA 81 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCcccc
Confidence 345789999999999999999999988 778899888876643321111 11222223332222
Q ss_pred ChHHHHHHH--------HHHhcCCCCCCCeEEEeCccc--CHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCC
Q 023307 144 PDEIVVTMV--------KERLSQPDSQENGWLLDGYPR--SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLD 211 (284)
Q Consensus 144 ~~~~~~~~l--------~~~i~~~~~~~~g~IlDg~p~--~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~ 211 (284)
++.. ..++ ............-+|+|||.- +..+.. ..+..|.+..+.++|.+|-..|...
T Consensus 82 ~~ar-~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~-------~~d~~im~~~~y~~~krRr~~Rt~y 151 (225)
T KOG3308|consen 82 PEAR-EHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVD-------LFDRIIMLTLDYETCKRRREARTYY 151 (225)
T ss_pred chHh-hhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhh-------hhhhheeeeccHHHHHHhhcccccC
Confidence 2210 0111 111112222345699999532 122222 3567999999999999999998653
No 166
>PHA03136 thymidine kinase; Provisional
Probab=98.18 E-value=6.4e-05 Score=69.09 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=22.5
Q ss_pred CCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 186 FQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 186 ~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
..+|.+|||+++.+++.+|+.+|+.
T Consensus 190 p~pD~IIyL~l~~e~~~~RI~kRgR 214 (378)
T PHA03136 190 PHGGNIVIMDLDECEHAERIIARGR 214 (378)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 3588999999999999999999963
No 167
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.17 E-value=9.1e-06 Score=81.15 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc-----EeehhHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV-----HIAAGDLLRA 121 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~-----~is~ddlir~ 121 (284)
.....|+++|.||+||||+++.|++.+++. +++.+..-+.
T Consensus 213 ~~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~ 257 (664)
T PTZ00322 213 MGSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRR 257 (664)
T ss_pred ccceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhh
Confidence 345689999999999999999999998554 4444444444
No 168
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=98.16 E-value=1.2e-05 Score=68.13 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=63.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH-HHc--CCcchHHH---------HHHHHcCCCcChHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE-IAA--GSENGKRA---------KEHMEKGQLVPDEIVVTM 151 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~-~~~--~~~~~~~~---------~~~~~~g~~~~~~~~~~~ 151 (284)
+.+++|.||+|+|||.+|-.||+++|.++|+.|.+.--. +.- +.+....+ ...+..|. ++-+...+.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~-i~a~ea~~~ 79 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGI-INAEEAHER 79 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S---HHHHHHH
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCC-cCHHHHHHH
Confidence 368999999999999999999999999999977653211 111 11111111 12244454 344456677
Q ss_pred HHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHc----CCCCcEEEEEEcCHHH-HHHHHHcC
Q 023307 152 VKERLSQPDSQENGWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPEDT-LVERVVGR 208 (284)
Q Consensus 152 l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~----~~~~~~vI~L~~~~e~-~~~Rl~~R 208 (284)
+...+..... ++++|++|-. ..-++.+.+. ....-.+.++.++++. .+.|..+|
T Consensus 80 Li~~v~~~~~-~~~~IlEGGS--ISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~R 138 (233)
T PF01745_consen 80 LISEVNSYSA-HGGLILEGGS--ISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRR 138 (233)
T ss_dssp HHHHHHTTTT-SSEEEEEE----HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHH
T ss_pred HHHHHHhccc-cCceEEeCch--HHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHH
Confidence 7777877776 7899999943 2333344332 1223457778887754 45555554
No 169
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.16 E-value=1.5e-05 Score=77.22 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=32.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCcEeehhHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLL 119 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~-~~~~is~ddli 119 (284)
...+.+|.|.|++||||||+++.|+..+ +..++++|+..
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 3456899999999999999999999887 44677777753
No 170
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.15 E-value=3.3e-05 Score=67.11 Aligned_cols=103 Identities=20% Similarity=0.346 Sum_probs=63.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHH-hcCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKER-LSQPDSQE 163 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~-i~~~~~~~ 163 (284)
.+|+|+|.+|||||+..+.| +.+|+.++| .+ |-+.+-+++.-. ..+.....
T Consensus 2 ~lvIVTGlSGAGKsvAl~~l-EDlGyycvD--NL-------------------------Pp~Llp~~~~~~~~~~~~~~k 53 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVL-EDLGYYCVD--NL-------------------------PPQLLPKLADLMLTLESRITK 53 (286)
T ss_pred cEEEEecCCCCcHHHHHHHH-HhcCeeeec--CC-------------------------CHHHHHHHHHHHhhcccCCce
Confidence 47999999999999999998 568988884 22 222222222111 11212224
Q ss_pred CeEEEeC----cccCH-HHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHc-CCCCCCCC
Q 023307 164 NGWLLDG----YPRSL-SQATALKKYGFQPDLFILLEVPEDTLVERVVG-RRLDPVTG 215 (284)
Q Consensus 164 ~g~IlDg----~p~~~-~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~-R~~~~~~g 215 (284)
-.+++|- +...+ +.+..+...+.....++||+++.+++++|+.. |+.||-..
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~ 111 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSE 111 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCc
Confidence 5688885 22222 22333444431235799999999999999985 67777543
No 171
>PRK09169 hypothetical protein; Validated
Probab=98.15 E-value=8e-05 Score=80.41 Aligned_cols=110 Identities=10% Similarity=-0.061 Sum_probs=76.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
....|+|+|.+|+||||+++.|++.+++.+++.|..+.+ ..+..|.+++.... ...+.-...+.+.+.
T Consensus 2109 ~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIek------s~GrkI~rIFa~eG-~FRe~Eaa~V~Dllr----- 2176 (2316)
T PRK09169 2109 GAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAK------KIGKKIARIQALRG-LSPEQAAARVRDALR----- 2176 (2316)
T ss_pred hhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHH------HhCCCHHHHHHhcC-chHHHHHHHHHHHhc-----
Confidence 445799999999999999999999999999999988877 34455666554332 334444455555442
Q ss_pred CCeEEEeC--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 163 ENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 163 ~~g~IlDg--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
...+|=.| ..........+...| ++||+..+.+++.+|+...
T Consensus 2177 ~~vVLSTGGGav~~~enr~~L~~~G----lvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2177 WEVVLPAEGFGAAVEQARQALGAKG----LRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred CCeEEeCCCCcccCHHHHHHHHHCC----EEEEEECCHHHHHHHhccC
Confidence 22233332 233344445566554 7999999999999999754
No 172
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.12 E-value=2.4e-05 Score=63.24 Aligned_cols=112 Identities=18% Similarity=0.188 Sum_probs=65.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~--~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
+...++.|+.||||||+-..+-..+ ++.+++.|.+.... .+..+....++. .+.....+.....
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i-~p~~p~~~~i~A-------------~r~ai~~i~~~I~ 67 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI-SPDNPTSAAIQA-------------ARVAIDRIARLID 67 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc-CCCCchHHHHHH-------------HHHHHHHHHHHHH
Confidence 3567888999999999986654444 67889988877553 222222211111 1222222322222
Q ss_pred CCCeEEEeC---cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 162 QENGWLLDG---YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 162 ~~~g~IlDg---~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+.++..+. .+...+.++..++.|....+.+++--+.|..++|++.|-
T Consensus 68 ~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RV 118 (187)
T COG4185 68 LGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRV 118 (187)
T ss_pred cCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHH
Confidence 366777775 334455566666666544444444456678999998873
No 173
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.04 E-value=5e-06 Score=75.22 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
++++|+|+||+|||||++|..|+++++..+++.|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 457899999999999999999999999999998884
No 174
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=98.03 E-value=9.9e-05 Score=61.58 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.9
Q ss_pred CCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 185 GFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 185 ~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
...+|.+|||.+++++|.+|+..|.
T Consensus 151 ~v~~dgiIYLrasPetc~~Ri~~R~ 175 (244)
T KOG4235|consen 151 DVSLDGIIYLRASPETCYKRIYLRA 175 (244)
T ss_pred ccccceEEEeecChHHHHHHHHHHh
Confidence 3678999999999999999999986
No 175
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.01 E-value=0.00012 Score=58.67 Aligned_cols=114 Identities=22% Similarity=0.270 Sum_probs=65.0
Q ss_pred HhhhccCCCeEEEEEcCCCCCHHHHHHHHHHHh---C-CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHH
Q 023307 76 VLASATVEPLKIMISGAPASGKGTQCELIKEKY---G-LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTM 151 (284)
Q Consensus 76 ~~~~~~~~~~~I~I~G~pGsGKSTla~~La~~~---~-~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 151 (284)
.+.....++.+|+|+|.+||||||+|-.|.+.+ | ..|+--+|-+|..+.. +++...++--++- ..+..
T Consensus 23 Rq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~--DL~F~a~dR~ENI------RRige 94 (207)
T KOG0635|consen 23 RQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK--DLGFKAEDRNENI------RRIGE 94 (207)
T ss_pred HHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc--ccCcchhhhhhhH------HHHHH
Confidence 344556677899999999999999999998876 3 3444335666654432 1211111100000 00011
Q ss_pred HHHHhcCCCCCCCeEEE-----eCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHH
Q 023307 152 VKERLSQPDSQENGWLL-----DGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVER 204 (284)
Q Consensus 152 l~~~i~~~~~~~~g~Il-----Dg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~R 204 (284)
+. .+.. ..++|. ..|...+++...+-..+ ..+-||+++|.++|..|
T Consensus 95 Va-KLFA----Dag~iciaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~R 145 (207)
T KOG0635|consen 95 VA-KLFA----DAGVICIASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEAR 145 (207)
T ss_pred HH-HHHh----ccceeeeehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhcc
Confidence 11 1111 123322 23556667766666554 55679999999999888
No 176
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.01 E-value=5.7e-06 Score=64.58 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=25.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 87 IMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
|+|.||||+||||+++.|++.++.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~ 28 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIE 28 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccc
Confidence 6899999999999999999999976654
No 177
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.01 E-value=8.9e-06 Score=64.93 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
.|+|+||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998764
No 178
>PF13173 AAA_14: AAA domain
Probab=97.98 E-value=0.00022 Score=55.96 Aligned_cols=115 Identities=18% Similarity=0.302 Sum_probs=66.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC----CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYG----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~----~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~ 159 (284)
.++++|.|+.|+||||+++.+++.+. +.++++++........ .+ +.+.+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~------------------~~--~~~~~~~~~~~- 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLAD------------------PD--LLEYFLELIKP- 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhh------------------hh--hHHHHHHhhcc-
Confidence 35899999999999999999998765 7788877665431110 00 12223332211
Q ss_pred CCCCCeEEEeCc---ccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCC
Q 023307 160 DSQENGWLLDGY---PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPE 226 (284)
Q Consensus 160 ~~~~~g~IlDg~---p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~ 226 (284)
...-++||.+ |.....++.+...+ ++.-|++..+......+ .....-.|+.......|.+
T Consensus 61 --~~~~i~iDEiq~~~~~~~~lk~l~d~~--~~~~ii~tgS~~~~l~~---~~~~~l~gr~~~~~l~Pls 123 (128)
T PF13173_consen 61 --GKKYIFIDEIQYLPDWEDALKFLVDNG--PNIKIILTGSSSSLLSK---DIAESLAGRVIEIELYPLS 123 (128)
T ss_pred --CCcEEEEehhhhhccHHHHHHHHHHhc--cCceEEEEccchHHHhh---cccccCCCeEEEEEECCCC
Confidence 3467899974 33334444444433 56778888877665543 1223344555444444443
No 179
>PRK06761 hypothetical protein; Provisional
Probab=97.98 E-value=1.7e-05 Score=70.81 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.++|+|+|+|||||||+++.|+++++...++
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~ 33 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIE 33 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceE
Confidence 4689999999999999999999998754443
No 180
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.95 E-value=3.6e-05 Score=65.57 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=67.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---C---CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhc
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY---G---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~---~---~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~ 157 (284)
++.|+|+|.|.|||||.|+.|.+.+ + .+++. +|-- -.++.+...+. .-.+..+...+...+.
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii-~des-lg~~~ns~y~~----------s~~EK~lRg~L~S~v~ 68 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRII-DDES-LGIEKNSNYGD----------SQAEKALRGKLRSAVD 68 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEe-chhh-cCCCCcccccc----------cHHHHHHHHHHHHHHH
Confidence 4689999999999999999999877 2 12222 2221 11111112221 1122334555666666
Q ss_pred CCCCCCCeEEEeCcc--cCHH-HHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 158 QPDSQENGWLLDGYP--RSLS-QATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 158 ~~~~~~~g~IlDg~p--~~~~-q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
....++..||+|... .... ++-...+......+||+..+|.|.|.+--..|..
T Consensus 69 R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~ 124 (281)
T KOG3062|consen 69 RSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERED 124 (281)
T ss_pred hhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCC
Confidence 666678899999521 1110 1001111222456899999999999998877654
No 181
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=8.5e-05 Score=71.56 Aligned_cols=117 Identities=21% Similarity=0.380 Sum_probs=65.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehh--HHHHHHHHcCCcchHHHHHHHHcCCCc-------------------
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAG--DLLRAEIAAGSENGKRAKEHMEKGQLV------------------- 143 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~d--dlir~~~~~~~~~~~~~~~~~~~g~~~------------------- 143 (284)
.=++|.||||||||.+|+.||.+++++++++. +++-... .+-.+.+++.+++....
T Consensus 224 rGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvS---GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~ 300 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVS---GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE 300 (802)
T ss_pred CceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccC---cccHHHHHHHHHHHhccCCeEEEeecccccccchhh
Confidence 35899999999999999999999999998742 2211100 01112233333221110
Q ss_pred -C---hHHHHHHHHHHhcCCC---CCCCeEEEeCc---ccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHc
Q 023307 144 -P---DEIVVTMVKERLSQPD---SQENGWLLDGY---PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (284)
Q Consensus 144 -~---~~~~~~~l~~~i~~~~---~~~~g~IlDg~---p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 207 (284)
. +..++..+..-+.+.. ..+.+|++-|- |-.++- .|.+.| ..|.-|.|.+|.++..+++..
T Consensus 301 aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDp--aLRRaG-RFdrEI~l~vP~e~aR~~IL~ 371 (802)
T KOG0733|consen 301 AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDP--ALRRAG-RFDREICLGVPSETAREEILR 371 (802)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCH--HHhccc-cccceeeecCCchHHHHHHHH
Confidence 0 1122333333333332 23566666662 222222 233333 688999999999988877654
No 182
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.92 E-value=0.00014 Score=59.31 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=27.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC-CcEeehhHH
Q 023307 87 IMISGAPASGKGTQCELIKEKYG-LVHIAAGDL 118 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~-~~~is~ddl 118 (284)
|+=++.+||||||++..|++-|| |.|+--|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 45578999999999999999999 999876665
No 183
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.90 E-value=3.1e-05 Score=64.15 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC--CcEeehhH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYG--LVHIAAGD 117 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~--~~~is~dd 117 (284)
++|+|+|+|||||||+|..|+..++ +.|+.+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4799999999999999999999986 45665544
No 184
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=97.90 E-value=0.00039 Score=60.26 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=91.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
...+.+|+|.|..||||+.+.+.|.+.++-..+.+-.+ +...+++.-...+...-....
T Consensus 28 ~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~---------------------~~pt~eE~~~p~lwRfw~~lP 86 (230)
T TIGR03707 28 TGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVAL---------------------PKPSDRERTQWYFQRYVQHLP 86 (230)
T ss_pred cCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeC---------------------CCCCHHHHcChHHHHHHHhCC
Confidence 45688999999999999999999999885444332111 011111222233334444444
Q ss_pred CCCCeEEEeC--c-----------------ccCHHHHHHHHHc---CCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCcee
Q 023307 161 SQENGWLLDG--Y-----------------PRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY 218 (284)
Q Consensus 161 ~~~~g~IlDg--~-----------------p~~~~q~~~l~~~---~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~ 218 (284)
..|+..|+|+ | .+...++..|++. ....-+-+||.++.++..+|+.+|..++.+.
T Consensus 87 ~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~~p~k~--- 163 (230)
T TIGR03707 87 AAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKARIDDPLKQ--- 163 (230)
T ss_pred CCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc---
Confidence 4566666664 1 1122334444442 2245567999999999999999987554331
Q ss_pred eccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc---cceEEeccC
Q 023307 219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED---VTVEVCDMI 274 (284)
Q Consensus 219 ~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~---~~i~ID~~~ 274 (284)
.+.........+++..|.+.++.++..-.. -..+|+|+.
T Consensus 164 -----------------Wk~~~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d 205 (230)
T TIGR03707 164 -----------------WKLSPMDLASLDRWDDYSRAKDEMFARTDTPEAPWTVVRSDD 205 (230)
T ss_pred -----------------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 112222334455677888888777776443 277788764
No 185
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.81 E-value=3e-05 Score=68.06 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...+.+|.|.|++|+||||+|+.|+..+
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 4667899999999999999999998766
No 186
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00034 Score=65.62 Aligned_cols=108 Identities=22% Similarity=0.304 Sum_probs=58.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh----CC-cEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY----GL-VHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERL 156 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~----~~-~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i 156 (284)
++.+|+|+|++||||||++..|+..+ |. +++...|..|.... ..++.+.+. +...........+.+.+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~------eQLk~yAe~lgvp~~~~~~~~~l~~~l 295 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAI------EQLKRYADTMGMPFYPVKDIKKFKETL 295 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHH------HHHHHHHHhcCCCeeehHHHHHHHHHH
Confidence 45789999999999999999999765 22 33333444444221 122233222 11111111122334444
Q ss_pred cCCCCCCCeEEEe--Ccc-cCHHHHHHHHHcC------CCCcEEEEEEcCH
Q 023307 157 SQPDSQENGWLLD--GYP-RSLSQATALKKYG------FQPDLFILLEVPE 198 (284)
Q Consensus 157 ~~~~~~~~g~IlD--g~p-~~~~q~~~l~~~~------~~~~~vI~L~~~~ 198 (284)
.. .....+||| |++ +...+++.|.... .....+++|++..
T Consensus 296 ~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 296 AR--DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred Hh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 32 224679999 653 6677777766521 1224566666655
No 187
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0002 Score=69.60 Aligned_cols=138 Identities=12% Similarity=0.166 Sum_probs=70.9
Q ss_pred CCCCCchhhHHhhhccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHH-----------HHc---CCc-
Q 023307 66 PQSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA--GDLLRAE-----------IAA---GSE- 128 (284)
Q Consensus 66 ~~~~~p~~~~~~~~~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~--ddlir~~-----------~~~---~~~- 128 (284)
+|..-|..+...-.. .|+-|++.||||||||++|+.||..-++.++++ -+++-.+ +.. ..+
T Consensus 452 ~p~~~pe~F~r~Gi~--ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~ 529 (693)
T KOG0730|consen 452 WPLKHPEKFARFGIS--PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPC 529 (693)
T ss_pred hhhhchHHHHHhcCC--CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCe
Confidence 333344444333333 345699999999999999999999888777765 2222222 111 000
Q ss_pred --chHHHHHHHH-cCCCcC--hHHHHHHHHHHhcCCCCCCCeEEEeCcccCHHHHH-HHHHcCCCCcEEEEEEcCHHHHH
Q 023307 129 --NGKRAKEHME-KGQLVP--DEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT-ALKKYGFQPDLFILLEVPEDTLV 202 (284)
Q Consensus 129 --~~~~~~~~~~-~g~~~~--~~~~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~-~l~~~~~~~~~vI~L~~~~e~~~ 202 (284)
.-.++..+.. .+.... .+.+...+...+.......+.+|+-...| .+++. .+-.- ...|.+||+..|++...
T Consensus 530 IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNR-pd~ID~ALlRP-GRlD~iiyVplPD~~aR 607 (693)
T KOG0730|consen 530 IIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNR-PDMIDPALLRP-GRLDRIIYVPLPDLEAR 607 (693)
T ss_pred EEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCC-hhhcCHHHcCC-cccceeEeecCccHHHH
Confidence 0111111111 111111 23344455555655554333444433222 12221 22222 24789999999998776
Q ss_pred HHHHc
Q 023307 203 ERVVG 207 (284)
Q Consensus 203 ~Rl~~ 207 (284)
..+.+
T Consensus 608 ~~Ilk 612 (693)
T KOG0730|consen 608 LEILK 612 (693)
T ss_pred HHHHH
Confidence 66554
No 188
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.74 E-value=0.00057 Score=60.35 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=89.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
..+.+|+|.|..||||..+.+.|.+.++-..+.+-.+ +....++.....+...-.....
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~---------------------~~Pt~eE~~~p~lWRfw~~lP~ 112 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSF---------------------KAPSAEELDHDFLWRIHKALPE 112 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeC---------------------CCCCHHHHcCchHHHHHHhCCC
Confidence 3488999999999999999999999885443332111 1111112222233333444444
Q ss_pred CCCeEEEeC--cc-----------------cCHHHHHHHHHc---CCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceee
Q 023307 162 QENGWLLDG--YP-----------------RSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH 219 (284)
Q Consensus 162 ~~~g~IlDg--~p-----------------~~~~q~~~l~~~---~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~ 219 (284)
.|+..|+|+ |- +...++..|++. ....-+-+||.++.++..+|+..|..++.+.
T Consensus 113 ~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~---- 188 (264)
T TIGR03709 113 RGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKN---- 188 (264)
T ss_pred CCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCccc----
Confidence 566666665 11 122333444432 2244567999999999999999986544321
Q ss_pred ccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc---cceEEeccC
Q 023307 220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED---VTVEVCDMI 274 (284)
Q Consensus 220 ~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~---~~i~ID~~~ 274 (284)
.+.........+++..|...++.++..-.. -..+|+|+.
T Consensus 189 ----------------Wk~s~~D~~~~~~yd~y~~a~e~~l~~T~t~~APW~iI~a~d 230 (264)
T TIGR03709 189 ----------------WKFSPADLKERAYWDDYMEAYEDALTATSTKHAPWYVVPADD 230 (264)
T ss_pred ----------------ccCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 112222334456677888877777766432 277777754
No 189
>PLN02840 tRNA dimethylallyltransferase
Probab=97.73 E-value=3.9e-05 Score=71.84 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~dd 117 (284)
.+.++|+|+||+||||||++..|+++++..+|+.|.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds 54 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADS 54 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccc
Confidence 445689999999999999999999999988888765
No 190
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.73 E-value=2.4e-05 Score=63.99 Aligned_cols=37 Identities=30% Similarity=0.531 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHc
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA 125 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~ 125 (284)
+|+|+|++|+||||+++.|++. |++++ .+..+..+..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~ 37 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEE 37 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHH
Confidence 4899999999999999999988 99988 6777766554
No 191
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.67 E-value=0.00029 Score=67.69 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
..++-|+|.||||+|||.+|+.++..++++++.+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l 290 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL 290 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3456799999999999999999999999887664
No 192
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.66 E-value=6.5e-05 Score=64.45 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcE-eehhHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVH-IAAGDLLRAEIA 124 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~-is~ddlir~~~~ 124 (284)
++|+|+|.|||||||+++.+.+. |.++ +++++.+++.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik~~l~ 40 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIKEILA 40 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHHHHHH
Confidence 48999999999999999999654 6666 999999988765
No 193
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.65 E-value=0.00082 Score=64.39 Aligned_cols=150 Identities=17% Similarity=0.096 Sum_probs=88.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhc
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~---~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~ 157 (284)
...+.+|+|.|..||||+++.+.|.+.++ +.+..+..- .+++.-...+...-.
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P------------------------~~eE~~~~flwRfw~ 92 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRP------------------------SDEERERPPMWRFWR 92 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCC------------------------CHHHhcCcHHHHHHH
Confidence 45678999999999999999999999884 444432111 111222223344444
Q ss_pred CCCCCCCeEEEeC--cc-----------------cCHHHHHHHHHc---CCCCcEEEEEEcCHHHHHHHHHcCCCCCCCC
Q 023307 158 QPDSQENGWLLDG--YP-----------------RSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (284)
Q Consensus 158 ~~~~~~~g~IlDg--~p-----------------~~~~q~~~l~~~---~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (284)
.....|...|+|+ |- +...++..|++. ....-+-+||.++.++..+|+..|..+|.+.
T Consensus 93 ~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~~P~k~ 172 (493)
T TIGR03708 93 RLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKLEKDPETR 172 (493)
T ss_pred hCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 4444566666664 11 112333344432 2244567999999999999999997654331
Q ss_pred ceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc---cceEEeccC
Q 023307 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED---VTVEVCDMI 274 (284)
Q Consensus 216 ~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~---~~i~ID~~~ 274 (284)
.........-.+++..|...++.++..-.. -..+|+|+.
T Consensus 173 --------------------WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~vI~add 214 (493)
T TIGR03708 173 --------------------WRVTPEDWKQLKVYDRYRKLAERMLRYTSTPYAPWTVVEGED 214 (493)
T ss_pred --------------------cCCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEcCCC
Confidence 111222233345577777777776665432 266666653
No 194
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.63 E-value=6.1e-05 Score=61.10 Aligned_cols=27 Identities=41% Similarity=0.527 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
.++.|+|+|+||+||||+++.|++.+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 457899999999999999999998873
No 195
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=5.2e-05 Score=67.94 Aligned_cols=29 Identities=24% Similarity=0.542 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
.+|++.||||.|||++|+.||+++.+...
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~ 206 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTN 206 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeec
Confidence 57999999999999999999999876543
No 196
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.56 E-value=8.6e-05 Score=58.92 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=24.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 87 IMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
|+|+|+||+|||++++.|++.++..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 789999999999999999999987764
No 197
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00052 Score=68.34 Aligned_cols=121 Identities=12% Similarity=0.176 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehh--HHHH-----------HHHHc---CCcch---HHHHHH-HHc----
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG--DLLR-----------AEIAA---GSENG---KRAKEH-MEK---- 139 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~d--dlir-----------~~~~~---~~~~~---~~~~~~-~~~---- 139 (284)
|+=++|+||||+|||-+|+.+|.+-|++++++. +.+. ..... ..+.- .++... ...
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~ 423 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKG 423 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccc
Confidence 345999999999999999999999999998852 2221 11110 00000 000000 001
Q ss_pred --CCCcChHHHHHHHHHHhcCCCCCCCeEEEeCcccCHHHHH-HHHHcCCCCcEEEEEEcCHHHHHHHHH
Q 023307 140 --GQLVPDEIVVTMVKERLSQPDSQENGWLLDGYPRSLSQAT-ALKKYGFQPDLFILLEVPEDTLVERVV 206 (284)
Q Consensus 140 --g~~~~~~~~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~-~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 206 (284)
+..-+.+.....+.-++..... ..++|+.+-....+.+. .+-+. ...|..|+++.|+..-...+-
T Consensus 424 ~~~~~~e~e~tlnQll~emDgf~~-~~~vi~~a~tnr~d~ld~allrp-GRfdr~i~i~~p~~~~r~~i~ 491 (774)
T KOG0731|consen 424 TGGGQDEREQTLNQLLVEMDGFET-SKGVIVLAATNRPDILDPALLRP-GRFDRQIQIDLPDVKGRASIL 491 (774)
T ss_pred cCCCChHHHHHHHHHHHHhcCCcC-CCcEEEEeccCCccccCHHhcCC-CccccceeccCCchhhhHHHH
Confidence 1111233344555555655555 36677776433332222 22222 367899999999866555443
No 198
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.00071 Score=61.45 Aligned_cols=133 Identities=17% Similarity=0.259 Sum_probs=76.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeeh-hHHHHHHHHcCCcchHHHHHHHHcCCCcChHH--HHHHHHHHhc
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY---GLVHIAA-GDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI--VVTMVKERLS 157 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~-ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~l~~~i~ 157 (284)
+-.|.++|.+|+||||++-.|.+.+ |++++.+ +|-+|..+..+. .+.+++. -++.+.+ +.
T Consensus 50 gctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knl-------------gfs~edreenirriae-va 115 (627)
T KOG4238|consen 50 GCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNL-------------GFSPEDREENIRRIAE-VA 115 (627)
T ss_pred ceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhcc-------------CCCchhHHHHHHHHHH-HH
Confidence 4579999999999999999997765 7888765 355555443221 1112211 1111111 11
Q ss_pred CCCCCCCeEEEeC----cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC-CCCCCCCcee-----eccCCCCCc
Q 023307 158 QPDSQENGWLLDG----YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR-RLDPVTGKIY-----HVKYSPPET 227 (284)
Q Consensus 158 ~~~~~~~g~IlDg----~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R-~~~~~~g~~~-----~~~~~~p~~ 227 (284)
.......-+.|.. |......+..+.+....+.+-++++++.++|.+|-.+. ......|.+. +..|++|..
T Consensus 116 klfadaglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids~ye~pe~ 195 (627)
T KOG4238|consen 116 KLFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDSDYEKPET 195 (627)
T ss_pred HHHhcCCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccccccccccCCCCC
Confidence 1111122233333 44445555555555556788999999999999984432 1112234432 347888887
Q ss_pred hHH
Q 023307 228 DEI 230 (284)
Q Consensus 228 ~~~ 230 (284)
+++
T Consensus 196 ~e~ 198 (627)
T KOG4238|consen 196 PER 198 (627)
T ss_pred hhH
Confidence 775
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.55 E-value=0.00022 Score=55.63 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...++|.|++|+|||++++.+++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 200
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.55 E-value=7.8e-05 Score=64.01 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
..-+++.||||+||||+|+.||++++..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 346999999999999999999999987654
No 201
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.51 E-value=8.1e-05 Score=57.61 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
+..++|.||||+||||+++.|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3579999999999999999999887543
No 202
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.51 E-value=8.3e-05 Score=66.56 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
+|+|+||+|||||+++..|++.++..+|++|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 489999999999999999999999999998773
No 203
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.00014 Score=62.22 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
.-|+|.||+|+||+|+.++|.++++.
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~ 63 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGG 63 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCC
Confidence 57999999999999999999999963
No 204
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.48 E-value=0.00011 Score=68.59 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~dd 117 (284)
.|..|+|+||||+|||++|+.|++.++++++.++.
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 34679999999999999999999999998887764
No 205
>PLN02748 tRNA dimethylallyltransferase
Probab=97.46 E-value=0.00012 Score=69.68 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~dd 117 (284)
.++.+|+|+||+|||||++|..|++.++..+|+.|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Ds 55 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADS 55 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCch
Confidence 445689999999999999999999999999999875
No 206
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.46 E-value=0.0037 Score=56.90 Aligned_cols=36 Identities=17% Similarity=0.387 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-------CcEeehhHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDL 118 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~-------~~~is~ddl 118 (284)
..+.++|.||||+||||+++.+++.+. +.+++..++
T Consensus 35 ~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 35 NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 334689999999999999999998873 345565554
No 207
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.43 E-value=0.00089 Score=54.20 Aligned_cols=135 Identities=9% Similarity=0.023 Sum_probs=76.0
Q ss_pred HHhhhccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHHHcCCcchHH------HHHHHHcCCCcCh-
Q 023307 75 QVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLLRAEIAAGSENGKR------AKEHMEKGQLVPD- 145 (284)
Q Consensus 75 ~~~~~~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is--~ddlir~~~~~~~~~~~~------~~~~~~~g~~~~~- 145 (284)
..+++...+..+|+|-|.+-+|||++|..|.+-+.-++++ +|-.+..........+.. ..........+.-
T Consensus 14 ~~~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~g 93 (205)
T COG3896 14 LAAMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPG 93 (205)
T ss_pred HHHHcCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeech
Confidence 4555667778899999999999999999998877555544 344433322111111100 0000000000101
Q ss_pred ---HHHHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHH-HHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 146 ---EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATAL-KKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 146 ---~~~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l-~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+....-....|.....++..+|.|.+-.+...+-.. ......+..+|=+.||.|++.+|-.+|.
T Consensus 94 pi~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~E~~~~Re~rr~ 161 (205)
T COG3896 94 PILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPDEEGARRELRRG 161 (205)
T ss_pred hHHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccHHHHHHHHhhcC
Confidence 111112233444444557789999876664433322 2222345677889999999999987764
No 208
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.004 Score=61.43 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
.-+..++|+|++|+||||+++.|++.+++
T Consensus 36 RLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 36 RLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44567899999999999999999999976
No 209
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.38 E-value=0.0042 Score=50.49 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~ 122 (284)
..+++.|+|+--||||||++.|+..||-+.. .+..|+.
T Consensus 7 F~K~VailG~ESsGKStLv~kLA~~fnt~~~--wEY~Re~ 44 (187)
T COG3172 7 FVKTVAILGGESSGKSTLVNKLANIFNTTSA--WEYGREY 44 (187)
T ss_pred hheeeeeecCcccChHHHHHHHHHHhCCCch--hHHHHHH
Confidence 3578999999999999999999999987643 3444443
No 210
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.37 E-value=0.00017 Score=66.35 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
.+..+++|+||||+||||+|+.|++.++.
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34578999999999999999999998854
No 211
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.36 E-value=0.00018 Score=67.33 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~dd 117 (284)
+..|+|+||||+|||++|+.|++.++++++.+|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 4679999999999999999999999988877654
No 212
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.35 E-value=0.00028 Score=61.10 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=81.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ 158 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~ 158 (284)
..+.+|+|.|..||||+.+.+.|.+.+ ++.+.+++.--. ++.....+...-..
T Consensus 29 ~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~------------------------eE~~~p~lwRfw~~ 84 (228)
T PF03976_consen 29 GIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTD------------------------EELRRPFLWRFWRA 84 (228)
T ss_dssp HHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--H------------------------HHHTS-TTHHHHTT
T ss_pred CCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCCh------------------------hHcCCCcHHHHHHh
Confidence 345889999999999999999998876 344443222111 11112234445555
Q ss_pred CCCCCCeEEEeC--ccc-----------------CHHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCc
Q 023307 159 PDSQENGWLLDG--YPR-----------------SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (284)
Q Consensus 159 ~~~~~~g~IlDg--~p~-----------------~~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (284)
....|+..|+|+ |.. .++++..|++ .....-+-+||.++.++..+|+.+|..+|.+.-
T Consensus 85 lP~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~~p~~~w 164 (228)
T PF03976_consen 85 LPARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKEREEDPLKRW 164 (228)
T ss_dssp S--TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHHHHSCCCGG
T ss_pred CCCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHHhcCccccc
Confidence 666677788886 211 1233333443 222344669999999999999999854333211
Q ss_pred eeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc---cceEEeccC
Q 023307 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED---VTVEVCDMI 274 (284)
Q Consensus 217 ~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~---~~i~ID~~~ 274 (284)
+.+.....-.+.+..|...++.++..-.. -..+|+|+.
T Consensus 165 --------------------kv~~~D~~~~~~yd~y~~a~~~~l~~T~t~~APW~iI~a~d 205 (228)
T PF03976_consen 165 --------------------KVSPEDWEQRKHYDRYQKAYEEMLERTDTPYAPWHIIPADD 205 (228)
T ss_dssp --------------------G--HHHHHHHCCHHHHHHHHHHHHHHH-BSSS-EEEEE-SS
T ss_pred --------------------cCCHHHHHHHhhHHHHHHHHHHHHhccCCCCCCeEEEeCCC
Confidence 11111222234577777777777665432 277788764
No 213
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.34 E-value=0.00025 Score=56.22 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
....+|+|.|..|+||||+++.|++.+|+.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 455789999999999999999999999864
No 214
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.34 E-value=0.0041 Score=51.45 Aligned_cols=114 Identities=16% Similarity=0.186 Sum_probs=70.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC---cEeehhHHHHHHHHcCCcchHHHHHHHHcCCC-----------------cCh
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGL---VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----------------VPD 145 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~---~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~-----------------~~~ 145 (284)
+|+|+|..+|||-|++..|.+.++. ..+.+.+-++..+.... +..+.+++..+.+ ...
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~--gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp 78 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEH--GLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 78 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHh--ChhHHHhcCCcccchhhhHHHHHHHHHHHhhCc
Confidence 5899999999999999999998874 24666666666554311 1111111111111 111
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHc
Q 023307 146 EIVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (284)
Q Consensus 146 ~~~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 207 (284)
+.+.+.+...+. ...|||++. |....+.+|........+.|-+.+++++..+|.-.
T Consensus 79 ~~F~r~~~~~~~-----~~v~iIsD~-Rr~~dv~~f~~~~g~~~~~VRV~AseetR~~Rgw~ 134 (182)
T TIGR01223 79 GFFCRKIVEGIS-----QPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWV 134 (182)
T ss_pred cHHHHHHHhccC-----CCEEEEeCC-CcccHHHHHHHHcCCceEEEEEecCHHHHHHHHHh
Confidence 233333333221 247888875 66667777777654556789999999999998744
No 215
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.33 E-value=0.0034 Score=62.82 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
-+..++|+|++|+||||+++.|++.+++.
T Consensus 37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 37 LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 35678999999999999999999999764
No 216
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00027 Score=63.58 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
.+.+|+|+||.+||||-+|-.||+++|..+||+|.+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 457899999999999999999999999999998875
No 217
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.29 E-value=0.0063 Score=62.16 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
..+.-++|.|++|+||||+++.|++.+++.
T Consensus 35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 445668999999999999999999999763
No 218
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0011 Score=61.10 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=32.2
Q ss_pred hhHHhhhccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 73 NFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 73 ~~~~~~~~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.....+.......-.++.||||+||||+|+.|+...+..+.-
T Consensus 37 ~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~ 78 (436)
T COG2256 37 KPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEA 78 (436)
T ss_pred chHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEE
Confidence 334444444555678999999999999999999998876654
No 219
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.27 E-value=0.00028 Score=64.95 Aligned_cols=38 Identities=42% Similarity=0.617 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee--hhHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLL 119 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is--~ddli 119 (284)
.-|..++|.||||||||.+|+.+++++|+.++. ..++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~ 185 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE 185 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh
Confidence 456789999999999999999999999876554 44444
No 220
>PLN03025 replication factor C subunit; Provisional
Probab=97.27 E-value=0.0085 Score=54.57 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...+.++|.||||+||||+++.+++.+
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344568899999999999999999986
No 221
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.27 E-value=0.00035 Score=54.55 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
....++|.|++|+||||+++.+++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999887
No 222
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.26 E-value=0.00029 Score=66.19 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI 123 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~ 123 (284)
-...+|+|+|++|||||||++.|++.||..++. ++-|+.+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~--E~~R~~~ 256 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAW--EYGREYV 256 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee--eccHHHH
Confidence 345789999999999999999999999988763 4444433
No 223
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.26 E-value=0.00033 Score=63.67 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
..|+|.|+||+||||+++.|++.+|++++.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 469999999999999999999999988763
No 224
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.011 Score=54.89 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
.-+..++|.||+|+||||+|+.+++.+++
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 34567899999999999999999999864
No 225
>PLN02796 D-glycerate 3-kinase
Probab=97.24 E-value=0.00032 Score=64.13 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLL 119 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddli 119 (284)
..+.+|.|.|++||||||+++.|...+. ...+++|+..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4678999999999999999999998774 3456667665
No 226
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.23 E-value=0.00033 Score=61.99 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+....++|.||||+||||+|+.+++.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999875
No 227
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0027 Score=61.51 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
|.=|++.||||||||-+|+.+|.+-|+-++++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence 44599999999999999999999988877775
No 228
>PRK06620 hypothetical protein; Validated
Probab=97.19 E-value=0.0016 Score=55.97 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
..++|.||+|+|||++++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 458999999999999999999888776654
No 229
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.18 E-value=0.00041 Score=57.36 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.|+|+|+||+||||+.+.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999888
No 230
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.0074 Score=58.85 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
-+..++|+||+|+||||+|+.|++.+++
T Consensus 37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 37 VHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456899999999999999999998865
No 231
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.0034 Score=60.02 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
+..++|+||+|+||||+|+.|++.+++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4568999999999999999999998764
No 232
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0011 Score=59.53 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
+-++|+|+|+.|+|||-|+--||.+|+...|+.|.+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm 41 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM 41 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccce
Confidence 457999999999999999999999999999986654
No 233
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.011 Score=56.88 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+.-++|.||+|+||||+|+.||+.+++.
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 335579999999999999999999988653
No 234
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0065 Score=58.34 Aligned_cols=27 Identities=15% Similarity=0.322 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
+..++|.||||+||||+|+.|++.++.
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456899999999999999999998865
No 235
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.12 E-value=0.00047 Score=64.50 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLL 119 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddli 119 (284)
+|.+|.|.|+.||||||+++.|...+. ...|++|+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 678999999999999999999987662 4567777765
No 236
>PRK09087 hypothetical protein; Validated
Probab=97.12 E-value=0.00061 Score=59.06 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA 121 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~ 121 (284)
+.++|.|++|||||++++.+++..+..+++.+++..+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~ 81 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSD 81 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchH
Confidence 4689999999999999999999999999987654433
No 237
>PRK04328 hypothetical protein; Provisional
Probab=97.12 E-value=0.0015 Score=57.44 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH-h----CCcEeehhH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK-Y----GLVHIAAGD 117 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~-~----~~~~is~dd 117 (284)
+.+..++|.|+||+|||++|..++.. + ...|+++.+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 45679999999999999999876543 2 245666533
No 238
>CHL00181 cbbX CbbX; Provisional
Probab=97.11 E-value=0.00073 Score=60.69 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+..++|.|+||+||||+|+.+++.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998865
No 239
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.11 E-value=0.0085 Score=57.53 Aligned_cols=153 Identities=12% Similarity=0.095 Sum_probs=94.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
...+.+|++.|..+|||....+.|.+.++-..+.+-.+ +.+..++.-...+........
T Consensus 296 ~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~---------------------~~Pt~~E~~~~~lwRf~~~lP 354 (493)
T TIGR03708 296 RKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPI---------------------AAPTDEEKAQHYLWRFWRHIP 354 (493)
T ss_pred CCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeC---------------------CCcCHHHHcCcHHHHHHHhCC
Confidence 56678999999999999999999999885433321111 111122233344555555555
Q ss_pred CCCCeEEEeC--cc-----------------cCHHHHHHHHHc---CCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCcee
Q 023307 161 SQENGWLLDG--YP-----------------RSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY 218 (284)
Q Consensus 161 ~~~~g~IlDg--~p-----------------~~~~q~~~l~~~---~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~ 218 (284)
..|...|+|. |- +...++..|++. .....+-+||.++.++-.+|+..|..+|.+.
T Consensus 355 ~~G~i~iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~~~p~k~--- 431 (493)
T TIGR03708 355 RRGRITIFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERENTPFKR--- 431 (493)
T ss_pred CCCeEEEEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHhcCCccC---
Confidence 5667777774 11 112333344431 2245567999999999999999997544321
Q ss_pred eccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc---cceEEeccC
Q 023307 219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED---VTVEVCDMI 274 (284)
Q Consensus 219 ~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~---~~i~ID~~~ 274 (284)
.+.++....-.+++..|...++.++..-.. -..+|+++.
T Consensus 432 -----------------WK~t~~D~~~r~~w~~Y~~a~~~ml~~T~t~~APW~vI~a~d 473 (493)
T TIGR03708 432 -----------------YKITDEDWRNREKWDAYEDAVNDMIDRTSTIIAPWTLVEAND 473 (493)
T ss_pred -----------------CcCCHHHHHHHHhHHHHHHHHHHHHHhcCCCCCCeEEEeCCC
Confidence 122333344456788888888887776543 266777653
No 240
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.10 E-value=0.011 Score=59.73 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=29.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~dd 117 (284)
..+...++|.||||+||||+|+.+++.++..++.++.
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 3444578999999999999999999988766554433
No 241
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.10 E-value=0.0017 Score=56.64 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=26.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH-h--C--CcEeehhH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK-Y--G--LVHIAAGD 117 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~-~--~--~~~is~dd 117 (284)
-+++..++|.|+||+|||++|..++.. . | ..|+++++
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 346679999999999999999876543 2 3 45666543
No 242
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.10 E-value=0.00055 Score=60.64 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
...|+|.|+||+|||++|+.|++.+|.+++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 346889999999999999999999988766
No 243
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.09 E-value=0.00057 Score=62.49 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
...|+|+|++|+||||+++.|++.++..++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4689999999999999999999999998863
No 244
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.09 E-value=0.0015 Score=56.33 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=49.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH------hCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCc-----------
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK------YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV----------- 143 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~------~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~----------- 143 (284)
-+++..++|.|+||+|||++|..++.. .++.++++++-.......-...+..+.++..+|...
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccc
Confidence 356679999999999999999876532 245677765555444443223444444554443210
Q ss_pred ---ChHHHHHHHHHHhcCCCCCCCeEEEeC
Q 023307 144 ---PDEIVVTMVKERLSQPDSQENGWLLDG 170 (284)
Q Consensus 144 ---~~~~~~~~l~~~i~~~~~~~~g~IlDg 170 (284)
.-+.+...+.+.+..... ..+|||.
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~--~~vVIDs 123 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKP--DRVVIDS 123 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTS--SEEEEET
T ss_pred cccCHHHHHHHHHHHHHhcCC--CEEEEEC
Confidence 112334444454444322 6788886
No 245
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.08 E-value=0.00066 Score=56.35 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 023307 86 KIMISGAPASGKGTQCELIKEKY-----GLVHIAAGD 117 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~-----~~~~is~dd 117 (284)
.++|.|+||+|||+++..++... .+.++++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 37899999999999998876543 345676543
No 246
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.012 Score=58.17 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
-+..++|.||+|+||||+|+.||+.+++.
T Consensus 36 l~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 36 LHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 35688999999999999999999999764
No 247
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00073 Score=66.43 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=33.7
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCC--cEeehhHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGL--VHIAAGDLLRA 121 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~~--~~is~ddlir~ 121 (284)
...+++++||+||||+|||++++.+|+.+|- +.++++.+--+
T Consensus 346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE 389 (782)
T COG0466 346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE 389 (782)
T ss_pred ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccH
Confidence 4567789999999999999999999999974 55666555433
No 248
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.06 E-value=0.00077 Score=65.28 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
..+.+|+||+||||||..+.|++++|+.+..
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 4588999999999999999999999987663
No 249
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.003 Score=57.62 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=38.5
Q ss_pred CCCCchhhHHhhhccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHH
Q 023307 67 QSTNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA--GDLLRAEI 123 (284)
Q Consensus 67 ~~~~p~~~~~~~~~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~--ddlir~~~ 123 (284)
|--.|..+...-..++ +=|++.||||+|||-+|+.+|..-+..+|-+ .+++++++
T Consensus 170 PL~~PElF~~~GI~PP--KGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYi 226 (406)
T COG1222 170 PLKNPELFEELGIDPP--KGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYI 226 (406)
T ss_pred cccCHHHHHHcCCCCC--CceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHh
Confidence 3344555544444444 4599999999999999999999988776643 56666543
No 250
>PRK14974 cell division protein FtsY; Provisional
Probab=97.05 E-value=0.0029 Score=57.99 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.++.+|+|+|++|+||||++..|+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999888887665
No 251
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.05 E-value=0.0011 Score=63.95 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=54.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCc---------ChH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV---------PDE 146 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~---------~~~ 146 (284)
-.++..++|.|+||+||||++..++... | +.|++..+-..+.......+|..+.++...|... ..+
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 3566799999999999999998887654 3 5677765444443333333444455555554321 113
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeCc
Q 023307 147 IVVTMVKERLSQPDSQENGWLLDGY 171 (284)
Q Consensus 147 ~~~~~l~~~i~~~~~~~~g~IlDg~ 171 (284)
.....+.+.+.+.. .+-+|||..
T Consensus 340 ~~~~~i~~~i~~~~--~~~vvIDsi 362 (484)
T TIGR02655 340 DHLQIIKSEIADFK--PARIAIDSL 362 (484)
T ss_pred HHHHHHHHHHHHcC--CCEEEEcCH
Confidence 34555556665433 367999983
No 252
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.05 E-value=0.00058 Score=63.98 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.+.-|+|.||||+|||++|+.++..++..++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~ 195 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIR 195 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEE
Confidence 34579999999999999999999998876554
No 253
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.05 E-value=0.0005 Score=55.10 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+++|+|+|+.|||||||++.|...
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999753
No 254
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.05 E-value=0.00048 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh
Q 023307 87 IMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~ 108 (284)
|+|.|+||+|||++++.|++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998765
No 255
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.04 E-value=0.0017 Score=61.63 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..|.+|+|+|++|+||||++..|+..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 357799999999999999999998766
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.04 E-value=0.00068 Score=57.46 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
|.+|+++||+|+||||.+-.||.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 5789999999999999999999876
No 257
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.04 E-value=0.0016 Score=53.92 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
+++|+|++|||||++|..++...+-
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~ 25 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGG 25 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4789999999999999999887653
No 258
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.024 Score=53.17 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.+.-++|.||+|+|||++|+.|++.+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 45679999999999999999999988654
No 259
>PRK12377 putative replication protein; Provisional
Probab=97.03 E-value=0.0085 Score=52.67 Aligned_cols=38 Identities=21% Similarity=0.460 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRA 121 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddlir~ 121 (284)
...++|.|+||+|||+++..|+..+ | +.++++.+++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 3579999999999999999999876 3 356777777655
No 260
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.03 E-value=0.013 Score=56.70 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
.-+..++|+||||+||||+|+.|++.+.+
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34567899999999999999999998854
No 261
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.03 E-value=0.00058 Score=64.35 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=28.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~d 116 (284)
..|+|.||||+|||++|+.|++.++++++.++
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 46999999999999999999999988777543
No 262
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.03 E-value=0.0018 Score=63.84 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=30.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.+..++.+|+||||.||||+|+.+|+.-|+.++.+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 34557899999999999999999999999998863
No 263
>PHA03134 thymidine kinase; Provisional
Probab=97.01 E-value=0.087 Score=48.06 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..-..|.|.|+.|.||||+++.|.+.
T Consensus 11 ~~~~rvYlDG~~GvGKTT~~~~l~~~ 36 (340)
T PHA03134 11 VRIVRIYLDGAYGIGKSTTGRVMASA 36 (340)
T ss_pred ccEEEEEEeCCCcCCHHHHHHHHHHh
Confidence 34468999999999999999999863
No 264
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.006 Score=57.06 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.+|+++|+.|+||||.+..||..+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999765
No 265
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.00 E-value=0.0022 Score=55.67 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=29.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLR 120 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir 120 (284)
-+++.+++|.|+||+|||+++..++... .+.++++++-..
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~ 66 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSK 66 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHH
Confidence 3566799999999999999999986442 345666544333
No 266
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.025 Score=56.02 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
.-+..++|+|++|+||||+++.|++.+++
T Consensus 36 rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 36 RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 44567899999999999999999999876
No 267
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0047 Score=60.90 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh--hHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA--GDLLRAEI 123 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~--ddlir~~~ 123 (284)
+.-|++.||||||||.+|..++...++.+|++ -+++.+.+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyI 742 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYI 742 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHh
Confidence 34699999999999999999999999999986 34444443
No 268
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.98 E-value=0.00046 Score=54.18 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 87 IMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
++|.|+||+||||+++.|++.+|..+..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 7899999999999999999999876643
No 269
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.98 E-value=0.00094 Score=57.56 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
..+..++|.|+||+||||+|+.|+. ...+++.|..
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~ 44 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMS 44 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC--CCEEEecccc
Confidence 3357799999999999999999962 3566766554
No 270
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.97 E-value=0.014 Score=59.69 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+..++|+|++|+||||+|+.|++.+++.
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 345668999999999999999999998764
No 271
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.96 E-value=0.00056 Score=59.77 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.6
Q ss_pred EEcCCCCCHHHHHHHHHHHhC
Q 023307 89 ISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 89 I~G~pGsGKSTla~~La~~~~ 109 (284)
|+||+||||||+|+.+.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999874
No 272
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.96 E-value=0.0013 Score=51.49 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
+...+|+|.|.-|+||||++|.|++.+|..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 556899999999999999999999998763
No 273
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.96 E-value=0.00093 Score=55.41 Aligned_cols=27 Identities=15% Similarity=0.058 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+++++.|+|++||||||+++.|...+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHH
Confidence 356799999999999999999998766
No 274
>PHA02244 ATPase-like protein
Probab=96.96 E-value=0.00083 Score=61.99 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLL 119 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddli 119 (284)
...|+|.|++|||||++|+.|+..++.+++.+..+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 345899999999999999999999999988766543
No 275
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.96 E-value=0.0011 Score=59.84 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
+++|+|+||.|||||.+|-.||++ +..+||+|.+
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 458999999999999999999999 4588887765
No 276
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.015 Score=56.23 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+..++|+||+|+||||+|+.|++.+++.
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 335689999999999999999999999764
No 277
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.94 E-value=0.0027 Score=54.81 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=26.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~d 116 (284)
-.++..++|.|+||+||||++..++... +..+++..
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3456799999999999999998766432 24556543
No 278
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.011 Score=57.50 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+..++|+||+|+||||+|+.|++.+++.
T Consensus 36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 36 RLHHAYLFTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 445678999999999999999999998763
No 279
>PF05729 NACHT: NACHT domain
Probab=96.94 E-value=0.00083 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+++|.|.+|+||||+++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 68999999999999999999766
No 280
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.94 E-value=0.0012 Score=54.63 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
..++++||+|+|||.+|+.|++.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999884
No 281
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.93 E-value=0.001 Score=61.75 Aligned_cols=32 Identities=19% Similarity=0.407 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+.-++|.||||+|||++++.++..++..++.+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 45699999999999999999999998776543
No 282
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.012 Score=57.17 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+..++|.||+|+||||+|+.|++.+++.
T Consensus 36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 36 YLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 445678999999999999999999999764
No 283
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.93 E-value=0.004 Score=53.59 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
...+.+.|+||+||||++..+.+++.
T Consensus 119 ~~l~glag~pGtgkst~~a~v~~aWp 144 (323)
T KOG2702|consen 119 EELTGLAGRPGTGKSTRIAAVDNAWP 144 (323)
T ss_pred hheeeeecCCCCcchhHHHHHHhhcc
Confidence 35799999999999999999988643
No 284
>PRK04195 replication factor C large subunit; Provisional
Probab=96.93 E-value=0.00087 Score=64.59 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+..++|.||||+||||+++.|++.+++.++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 56799999999999999999999999877653
No 285
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.0034 Score=55.67 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcE
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVH 112 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~ 112 (284)
-+++.||||-||||+|+.+|.++|.-+
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 599999999999999999999997654
No 286
>PF13245 AAA_19: Part of AAA domain
Probab=96.92 E-value=0.0011 Score=47.30 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=18.8
Q ss_pred CCeEEEEEcCCCCCHH-HHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKG-TQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKS-Tla~~La~~~ 108 (284)
...+.+|.||||+||| |+++.++..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456888999999999 5555555544
No 287
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.92 E-value=0.001 Score=62.52 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.+.-|+|.||||+|||++++.++...+..++.+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 356799999999999999999999988776654
No 288
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.91 E-value=0.0014 Score=57.49 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=24.1
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+...+..+|.|+|+||+||||+...|...|
T Consensus 24 ~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 24 PHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp GGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred hhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 334567899999999999999999998876
No 289
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.91 E-value=0.00093 Score=62.84 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
..|+|.||||+|||++|+.|++.+++++..
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence 479999999999999999999999887754
No 290
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.89 E-value=0.0013 Score=50.15 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
....++|.|++||||||+++.+. -+-..+.-+|+
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 45789999999999999999987 23334443444
No 291
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.018 Score=56.91 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
..+..++|.|++|+||||+++.|++.+++.
T Consensus 36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 36 RVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 345678999999999999999999998653
No 292
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.018 Score=56.85 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+..++|.|++|+||||+++.|++.+++.
T Consensus 36 ~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 36 RVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 345678999999999999999999998653
No 293
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.87 E-value=0.0013 Score=59.36 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcE
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVH 112 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~ 112 (284)
+..++|.||||+|||++++.+++.++..+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 44689999999999999999999987653
No 294
>PHA03135 thymidine kinase; Provisional
Probab=96.87 E-value=0.049 Score=49.71 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..-.+|.|.|+.|+||||+++.|++.
T Consensus 8 ~~~~rIYlDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 8 AQLIRVYLDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 44568999999999999999999875
No 295
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.86 E-value=0.0012 Score=59.15 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..++|.|+||+||||+|+.+++.+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999998888765
No 296
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.012 Score=52.59 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=30.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEee--hhHHHHHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLLRAEI 123 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is--~ddlir~~~ 123 (284)
-|+|.||||.|||.+|+.+|-+-+-.+++ ..|++.+.+
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 59999999999999999999888755544 467776643
No 297
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.86 E-value=0.0013 Score=56.41 Aligned_cols=39 Identities=13% Similarity=0.097 Sum_probs=30.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLL 119 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddli 119 (284)
...+..++|.|++|+|||++++.++... .+.+++..++.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 3455689999999999999999998765 34566655554
No 298
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.021 Score=52.86 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehh
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~d 116 (284)
-++++||||+|||-||+.++-+.|..++++.
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcCeEEEec
Confidence 4899999999999999999999998887753
No 299
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.85 E-value=0.0086 Score=60.76 Aligned_cols=32 Identities=25% Similarity=0.466 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+.-|+|.||||||||++|+.|+..++..++.+
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 45689999999999999999999998777654
No 300
>PTZ00202 tuzin; Provisional
Probab=96.84 E-value=0.0048 Score=58.25 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcE
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVH 112 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~ 112 (284)
+.+++|+|++|+||||+++.+....+.+.
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~l~~~q 314 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRKEGMPA 314 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCceE
Confidence 45999999999999999999998877543
No 301
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0011 Score=65.07 Aligned_cols=41 Identities=17% Similarity=0.342 Sum_probs=33.5
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CcEeehhHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLR 120 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~--~~~is~ddlir 120 (284)
...+++++|++||||+|||++++.+|+.+| +..++++.+-.
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tD 476 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTD 476 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccccc
Confidence 456789999999999999999999999997 45566655543
No 302
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.026 Score=55.58 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+..++|.||+|+||||+|+.|++.+++.
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 345678999999999999999999998763
No 303
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.82 E-value=0.0011 Score=64.10 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+.-++|.||||+|||++++.|+...+++++.+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 45699999999999999999999998877654
No 304
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.82 E-value=0.0017 Score=61.28 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=28.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
......++|.||||+||||+|+.|++..+..++.+
T Consensus 33 ~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 33 AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34455789999999999999999999887766543
No 305
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.81 E-value=0.021 Score=51.44 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.++|.|++|+||||+++.+++.+
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3458999999999999999999876
No 306
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.81 E-value=0.0014 Score=59.98 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
+..++|.||||+||||+|+.+++.++..+.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 457899999999999999999999987543
No 307
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.81 E-value=0.0057 Score=56.32 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=71.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
...+++.|+.|||||++...|.+. +..++|+.++.+.. |+..|. ... . .-....+...+...+..... .
T Consensus 141 ~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehr---GS~fG~----~~~-~-qpsQ~~Fe~~l~~~l~~~~~-~ 209 (345)
T PRK11784 141 FPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHR---GSSFGR----LGG-P-QPSQKDFENLLAEALLKLDP-A 209 (345)
T ss_pred CceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhc---cccccC----CCC-C-CcchHHHHHHHHHHHHcCCC-C
Confidence 356889999999999999999765 78899887776542 222221 100 1 11234455667777766554 5
Q ss_pred CeEEEeCcccCH-------HHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 164 NGWLLDGYPRSL-------SQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 164 ~g~IlDg~p~~~-------~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
+.+++++-.+.+ .-.+.+. ...+|+|++|.+..++|+..-..
T Consensus 210 ~~i~vE~Es~~IG~~~lP~~l~~~m~-----~~~~v~i~~~~e~Rv~~l~~~Y~ 258 (345)
T PRK11784 210 RPIVVEDESRRIGRVHLPEALYEAMQ-----QAPIVVVEAPLEERVERLLEDYV 258 (345)
T ss_pred CeEEEEeccccccCccCCHHHHHHHh-----hCCEEEEECCHHHHHHHHHHHhh
Confidence 678888622211 1122222 22588999999999999998653
No 308
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0011 Score=56.43 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La 105 (284)
-.++-+++|+||+||||||+.+.|.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3556799999999999999999985
No 309
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.79 E-value=0.002 Score=56.18 Aligned_cols=35 Identities=6% Similarity=0.013 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGD 117 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~dd 117 (284)
....++|.||+|+|||++++.++.... +.++++++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 345799999999999999999987653 46776655
No 310
>PRK08116 hypothetical protein; Validated
Probab=96.77 E-value=0.013 Score=52.22 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRA 121 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddlir~ 121 (284)
.-++|.|++|+|||.++..++.++ + +.++++.+++..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 459999999999999999999875 3 456677777654
No 311
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.012 Score=58.52 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+..++|+|++|+||||+|+.|++.+++.
T Consensus 36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 36 RLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 344568999999999999999999998763
No 312
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.76 E-value=0.0011 Score=61.99 Aligned_cols=24 Identities=42% Similarity=0.664 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.=|+|.|+||+||||+|+.||+-|
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHH
Confidence 359999999999999999999977
No 313
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.76 E-value=0.0045 Score=53.75 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~d 116 (284)
+...+++|.|++|+||||+|..++..+ +..+++.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 345689999999999999985544322 34455543
No 314
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.76 E-value=0.0014 Score=52.87 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~dd 117 (284)
...-++|.|++|+||||+|..|.++ |..+++ ||
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lva-DD 45 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVA-DD 45 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEE-CC
Confidence 3467999999999999999988765 777775 54
No 315
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.75 E-value=0.0013 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+-.|.|+||+||||||+-+.++.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh
Confidence 4456899999999999999999986
No 316
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0013 Score=57.13 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=23.4
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...++-++.|.||+||||||+-+.++-
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 345667999999999999999999984
No 317
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.75 E-value=0.011 Score=58.25 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcE
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVH 112 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~ 112 (284)
-+.-++|+|++|+||||+|+.|++.+++..
T Consensus 45 i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 45 IAQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 355799999999999999999999987653
No 318
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.74 E-value=0.0015 Score=52.48 Aligned_cols=30 Identities=20% Similarity=0.499 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
++++++|+|.||+||||+...|+++ |+..+
T Consensus 8 R~~~fIltGgpGaGKTtLL~aLa~~-Gfatv 37 (183)
T COG3911 8 RHKRFILTGGPGAGKTTLLAALARA-GFATV 37 (183)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHc-Cceee
Confidence 3468999999999999999999865 66554
No 319
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.73 E-value=0.0034 Score=54.22 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=27.3
Q ss_pred hhhccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 77 LASATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 77 ~~~~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.......++.++|.||||+||||-...||.++
T Consensus 41 via~~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 41 VIAKEGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHHcCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 34455677899999999999999999999875
No 320
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.72 E-value=0.0026 Score=54.83 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLL 119 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddli 119 (284)
...++|.|++|+|||++++.++... .+.+++..+..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 3578999999999999999999876 56677765543
No 321
>PRK06893 DNA replication initiation factor; Validated
Probab=96.72 E-value=0.0021 Score=55.76 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~d 116 (284)
.+.++|.|+||+|||++++.++.++ +..++++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 3568999999999999999999875 55666653
No 322
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.71 E-value=0.0021 Score=50.23 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=26.4
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.+|+++.+.|++|+||+.++++||+.+
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46788999999999999999999999984
No 323
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.71 E-value=0.0015 Score=53.81 Aligned_cols=29 Identities=17% Similarity=0.420 Sum_probs=19.0
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
....+..++|.|++|+|||++.+.+.+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556899999999999999999887765
No 324
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.71 E-value=0.0018 Score=61.53 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.+..++|.||||+|||++++.++..++..++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 34578999999999999999999998776654
No 325
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.039 Score=54.55 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
++.++|.|++|+||||+|+.|++.+++
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999999875
No 326
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.70 E-value=0.053 Score=49.76 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
.+..++|.|++|+||||+++.|++.+..
T Consensus 35 ~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 35 IAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3567899999999999999999998754
No 327
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.70 E-value=0.017 Score=56.82 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=29.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh-------CCcEeehhHHHHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKY-------GLVHIAAGDLLRAE 122 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~-------~~~~is~ddlir~~ 122 (284)
.++|.|++|+|||.|++.++.++ .+.|++..+++...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 48999999999999999998864 34678877776554
No 328
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.68 E-value=0.0048 Score=59.50 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=27.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH----h--CCcEeehhHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK----Y--GLVHIAAGDL 118 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~----~--~~~~is~ddl 118 (284)
-+++..++|.|+|||||||+|..++.+ + +..|+++.+-
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES 61 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 356779999999999999999887432 2 3456665433
No 329
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.68 E-value=0.0096 Score=56.75 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-------CCcEeehhHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY-------GLVHIAAGDLLRAE 122 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~-------~~~~is~ddlir~~ 122 (284)
..++|.|++|+|||++++.++.++ .+.|++..+++.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 359999999999999999998764 34677777766554
No 330
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.66 E-value=0.0017 Score=62.11 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
+..+.+|+||+||||||..+.|++.+|+.++
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 3458999999999999999999999998876
No 331
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.66 E-value=0.0017 Score=57.22 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
..+..++|.|++|+||||+++.++..+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3455899999999999999999998875
No 332
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.65 E-value=0.0016 Score=59.53 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...+-+++|.||+||||||+.++||-
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34567899999999999999999984
No 333
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.65 E-value=0.052 Score=53.45 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
..+.-++|.||+|+||||+|+.|++.+.+
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34567999999999999999999999864
No 334
>PRK13695 putative NTPase; Provisional
Probab=96.64 E-value=0.0019 Score=53.37 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+.|+|+|++|+||||+++.|+..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999987665
No 335
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.64 E-value=0.0027 Score=58.16 Aligned_cols=28 Identities=36% Similarity=0.461 Sum_probs=24.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..++.+|.|+|+|||||||++..|...+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4677899999999999999999887765
No 336
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.63 E-value=0.094 Score=43.71 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
.-+..++|.|++|+||||+++.+++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34568999999999999999999998743
No 337
>CHL00176 ftsH cell division protein; Validated
Probab=96.63 E-value=0.002 Score=63.96 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+.-++|.||||+|||++|+.|+...+++++.+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45699999999999999999999998887754
No 338
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.62 E-value=0.0022 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
++|.|+|+.+|||||+++.|...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998776
No 339
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.62 E-value=0.0037 Score=52.12 Aligned_cols=41 Identities=24% Similarity=0.381 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAE 122 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir~~ 122 (284)
.....++|.|++|+|||.+|..++.++ .+.++++.+++...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 345789999999999999999998654 35678888888663
No 340
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.07 Score=52.98 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+.-++|.||+|+||||+|+.|++.+++.
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345669999999999999999999999874
No 341
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.61 E-value=0.0021 Score=52.91 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=24.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY---G--LVHIAAG 116 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~---~--~~~is~d 116 (284)
+++++|+||+||||++..|+..+ | +.+++.|
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 68999999999999999998775 4 3456655
No 342
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.61 E-value=0.0023 Score=54.34 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
|..|.|+|++||||||+.+.|.+.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999988775
No 343
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.61 E-value=0.002 Score=54.55 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
.|+|+||+||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999998877663
No 344
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.60 E-value=0.002 Score=51.95 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=20.4
Q ss_pred CCC-CcEEEEEEcCHHHHHHHHHcCCC
Q 023307 185 GFQ-PDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 185 ~~~-~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
... |+++|||++|+++|++|+.+|+.
T Consensus 64 ~~~~pdl~IYL~~~~e~~~~RI~kRgR 90 (146)
T PF01712_consen 64 IPKSPDLIIYLDASPETCLERIKKRGR 90 (146)
T ss_dssp CCHH-SEEEEEE--HHHHHHHHHHCTT
T ss_pred hhccCCeEEEEeCCHHHHHHHHHHhCC
Confidence 345 89999999999999999999973
No 345
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.60 E-value=0.0073 Score=53.29 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=33.6
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAE 122 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir~~ 122 (284)
...+|.+|++.|..||||||++++|-..+. --+|++|-.++..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~v 62 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNV 62 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcC
Confidence 456678999999999999999999987662 3457777766654
No 346
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.58 E-value=0.011 Score=56.46 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----C--CcEeehhHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY-----G--LVHIAAGDLLRA 121 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~-----~--~~~is~ddlir~ 121 (284)
..++|.|++|+|||++++.++.++ + +.+++..++..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 358999999999999999999876 2 446776666544
No 347
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.57 E-value=0.0024 Score=48.82 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~ 107 (284)
+|+|.|++|+||||+.+.|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 348
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.045 Score=52.35 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
-+..++|.|++|+||||+|+.+++.+...
T Consensus 38 i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 38 AAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 35678999999999999999999988553
No 349
>PRK06526 transposase; Provisional
Probab=96.56 E-value=0.003 Score=55.77 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRA 121 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddlir~ 121 (284)
.+..++|.||||+|||+++..|+.+. | +.+++..+++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 45689999999999999999997654 3 334445555544
No 350
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0028 Score=56.49 Aligned_cols=31 Identities=29% Similarity=0.346 Sum_probs=27.1
Q ss_pred hhccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 78 ASATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 78 ~~~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+...+..+|.|+|+||+||||+...|...|
T Consensus 45 ~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 45 YPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred hhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 4556778899999999999999999998877
No 351
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.55 E-value=0.0023 Score=62.19 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.++++|+||||+||||+++.|++.+
T Consensus 100 ~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 100 EEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 4456799999999999999999999865
No 352
>PHA03138 thymidine kinase; Provisional
Probab=96.54 E-value=0.061 Score=49.10 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..-.+|.|.|+.|+||||+++.+.+.+
T Consensus 10 ~~~~riYleG~~GvGKTT~~~~~l~~~ 36 (340)
T PHA03138 10 MCILRIYLDGAFGIGKTTAAEAFLHGF 36 (340)
T ss_pred ccEEEEEEECCCCcCHHhHHHHHHHhh
Confidence 445789999999999999998776654
No 353
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.53 E-value=0.0029 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.151 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+++|.|+|++||||||++..|...+
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999876
No 354
>PRK13768 GTPase; Provisional
Probab=96.53 E-value=0.003 Score=55.68 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+++|+|.|++|+||||++..++..+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHH
Confidence 4689999999999999999888766
No 355
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.53 E-value=0.016 Score=54.48 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----C--CcEeehhHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY-----G--LVHIAAGDLLRA 121 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~-----~--~~~is~ddlir~ 121 (284)
..++|.|++|+|||++++.++.++ + +.+++..++...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 358999999999999999998765 2 456776666544
No 356
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.025 Score=51.85 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAE 122 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir~~ 122 (284)
..++|.|++|+|||+++..++..+ .+.++++.+++...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 679999999999999999999875 45677777776653
No 357
>PRK09183 transposase/IS protein; Provisional
Probab=96.52 E-value=0.0041 Score=55.02 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRA 121 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddlir~ 121 (284)
..+..++|.||+|+|||+++..|+... | +.+++..+++..
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~ 144 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ 144 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH
Confidence 345679999999999999999997553 3 345555555533
No 358
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.51 E-value=0.073 Score=45.84 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-------CCcEeehhHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY-------GLVHIAAGDLLRAEI 123 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~-------~~~~is~ddlir~~~ 123 (284)
..++|.|++|+|||.+.+.++.++ .+.|++..+......
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence 358999999999999999998654 246787777766543
No 359
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.50 E-value=0.003 Score=57.54 Aligned_cols=27 Identities=30% Similarity=0.527 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+|+|+||+|+||||++..|+..+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 356899999999999999999998876
No 360
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.49 E-value=0.0022 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+++|.|++|+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998765
No 361
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.48 E-value=0.0033 Score=56.04 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.++.+|+|+|++|+||||++..|+..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 456789999999999999999998766
No 362
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.48 E-value=0.0023 Score=61.77 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
+.-|+|.||||+|||++++.+++.++..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 4569999999999999999999987543
No 363
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.48 E-value=0.0026 Score=54.90 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
-.++-++.|+||+||||||+-..|.-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 35567899999999999999999863
No 364
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.48 E-value=0.0031 Score=64.34 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
+++.++|.||||+|||++|+.|++.++..++.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~ 377 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVR 377 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEE
Confidence 45689999999999999999999999776653
No 365
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.48 E-value=0.092 Score=52.23 Aligned_cols=28 Identities=11% Similarity=0.343 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
..-++|.|++|+||||+|+.|++.+++.
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 4578999999999999999999998763
No 366
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.47 E-value=0.0031 Score=55.65 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=28.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDL 118 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddl 118 (284)
-++..+++|.|+||+|||+++..++... | +.++++++-
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 3566799999999999999998876543 3 456665443
No 367
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.015 Score=55.82 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
|+=|+++||||.|||-+|+.+|-+-|++++.+
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCCeEec
Confidence 56799999999999999999999999988764
No 368
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.0029 Score=61.13 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
..+..++|.||||+|||.+|+.++...+..++++
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 3445899999999999999999999888777764
No 369
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.46 E-value=0.0029 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+|+|+|++|+||||+.+.|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999864
No 370
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.018 Score=50.81 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAE 122 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddlir~~ 122 (284)
++..++|.|+||+|||.++..|+.++ | +.++.+.+++.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 66789999999999999999888765 3 3467778888764
No 371
>PRK10646 ADP-binding protein; Provisional
Probab=96.45 E-value=0.0054 Score=49.75 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
..+.+|++.|.-|+||||++|.|++.+|+
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44568999999999999999999999986
No 372
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.44 E-value=0.0036 Score=52.42 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.....++|+|++||||||+.+.|...+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999998765
No 373
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.42 E-value=0.0027 Score=58.35 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...+-++.|.||+||||||+.++||-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 34557899999999999999999984
No 374
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.42 E-value=0.037 Score=55.33 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=27.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.-|+|.|+||+|||++++.|+..++.+++.+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 4599999999999999999999998877654
No 375
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.41 E-value=0.086 Score=51.82 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+..++|.|++|+||||+|+.|++.+++.
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 345679999999999999999999998753
No 376
>PRK08181 transposase; Validated
Probab=96.40 E-value=0.0057 Score=54.41 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRAE 122 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddlir~~ 122 (284)
....++|.|++|+|||.++..|+.+. | +.++++.+++...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 45679999999999999999998643 3 5667777777654
No 377
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.003 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
-..+-.+.|+|.+||||||+++.|+-
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence 35667899999999999999999984
No 378
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.39 E-value=0.031 Score=56.08 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+..++|.||+|+||||+|+.|++.+.+.
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 345678999999999999999999998764
No 379
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.38 E-value=0.0047 Score=42.17 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+.+|+|+.||||||+...+.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988754
No 380
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.38 E-value=0.0038 Score=55.93 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
++.+|+|+||.|+||||++..|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999988755
No 381
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.37 E-value=0.0039 Score=67.56 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEee--hhHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA--AGDLLR 120 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is--~ddlir 120 (284)
+.-|+|+||||+|||.+|+.||...+++.+. ..+++.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 3459999999999999999999999887654 456553
No 382
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.35 E-value=0.011 Score=50.34 Aligned_cols=33 Identities=24% Similarity=0.427 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGD 117 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~dd 117 (284)
--+++.||.||||||.|..+.++. | +.++++|-
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDP 41 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDP 41 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCH
Confidence 357899999999999999997754 2 44555443
No 383
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.34 E-value=0.014 Score=53.21 Aligned_cols=39 Identities=28% Similarity=0.178 Sum_probs=29.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLL 119 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddli 119 (284)
-++..++.|.|+|||||||+|..++... | +.+|++....
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~ 95 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL 95 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchh
Confidence 4667899999999999999998876543 2 4567654433
No 384
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.34 E-value=0.0038 Score=63.30 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.+..|+|.||||+||||+++.|+..++..++.+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i 243 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI 243 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEE
Confidence 345799999999999999999999998766543
No 385
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.003 Score=57.69 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.++-|++.||||+|||-+|+.++++-|...+++
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 456799999999999999999999998777664
No 386
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.057 Score=49.45 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=26.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
..-+.-++|.|++|+||+|+|+.|++.+.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 3446679999999999999999999998653
No 387
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.32 E-value=0.0042 Score=56.27 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcE
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVH 112 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~ 112 (284)
.+..++|.|++|+||||+++.+++.++..+
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 345777799999999999999999876543
No 388
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.32 E-value=0.0037 Score=52.34 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+..
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999754
No 389
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.028 Score=51.12 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
-.|+.|+.+||.|+|||.+|++||+--|.+++-
T Consensus 48 V~PKNILMIGpTGVGKTEIARRLAkl~~aPFiK 80 (444)
T COG1220 48 VTPKNILMIGPTGVGKTEIARRLAKLAGAPFIK 80 (444)
T ss_pred cCccceEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 456899999999999999999999977877763
No 390
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.31 E-value=0.0058 Score=52.00 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=17.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...+.+|.||||+||||+...+...+
T Consensus 16 ~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 16 SNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCChHHHHHHHHHHh
Confidence 33378999999999997666655544
No 391
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.31 E-value=0.0032 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.+++|+|+.||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 45689999999999999999997644
No 392
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.29 E-value=0.0038 Score=53.38 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+..+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3456789999999999999999998643
No 393
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.29 E-value=0.0041 Score=56.91 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.+..++|.|+||+|||++++.+++.++.+++.
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~ 73 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVR 73 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 34569999999999999999999999866543
No 394
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.28 E-value=0.02 Score=51.86 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-+.+.++.|.|+||||||++|..++-.
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~ 118 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVN 118 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355789999999999999999999755
No 395
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.28 E-value=0.0039 Score=53.29 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|+|++||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998643
No 396
>COG2326 Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.062 Score=46.87 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=69.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
.....+|++.|-.++||.-..+.+.+.++=....+-.+ ..+.+.+.-...+...+....
T Consensus 71 ~~~~vvivfEGrDAAGKgG~Ikri~~~lNPR~~rvval---------------------~aPt~~E~~qwY~qRy~~~lP 129 (270)
T COG2326 71 TGQRVVIVFEGRDAAGKGGAIKRITEALNPRGARVVAL---------------------PAPTDRERGQWYFQRYVAHLP 129 (270)
T ss_pred cCCeEEEEEecccccCCCchhHHHhhhcCCceeEEeec---------------------CCCChHhhccHHHHHHHHhCC
Confidence 34567899999999999999999999885333221111 111112222334555566666
Q ss_pred CCCCeEEEeC-------------cccCHHHHHHH-------HH---cCCCCcEEEEEEcCHHHHHHHHHcCCCCC
Q 023307 161 SQENGWLLDG-------------YPRSLSQATAL-------KK---YGFQPDLFILLEVPEDTLVERVVGRRLDP 212 (284)
Q Consensus 161 ~~~~g~IlDg-------------~p~~~~q~~~l-------~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~ 212 (284)
..|..+|+|. | ++-+|.+.+ ++ ......+-+||+++.|+-.+|+..|..+|
T Consensus 130 a~GeiviFdRSwYnr~gVeRVmGf-ct~~q~~rfl~eip~FE~mL~~~Gi~l~Kfwl~Is~eeQ~~RF~~R~~dP 203 (270)
T COG2326 130 AAGEIVIFDRSWYNRAGVERVMGF-CTPKQYKRFLREIPEFERMLVESGIILVKFWLSISREEQLERFLERRNDP 203 (270)
T ss_pred CCCeEEEechhhccccCeeecccc-CCHHHHHHHHHHhhHHHHHHHhCCeEEEEEEEeCCHHHHHHHHHHHhcCH
Confidence 6778888883 2 233333322 22 12234566899999999999999997543
No 397
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.28 E-value=0.0039 Score=54.88 Aligned_cols=36 Identities=22% Similarity=0.129 Sum_probs=28.5
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHh----CCcEee
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKY----GLVHIA 114 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~----~~~~is 114 (284)
..-+.+.+++|.||.||||||+.+.|+.-+ |-.+++
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~ 62 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEEC
Confidence 344567899999999999999999998754 445554
No 398
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.004 Score=53.12 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=23.5
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...++..+..|+||+||||||+.+.|-.
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHh
Confidence 3445667999999999999999999854
No 399
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.25 E-value=0.0052 Score=50.06 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.+...|+|+|++||||||+.+.|...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcC
Confidence 34578999999999999999999753
No 400
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.25 E-value=0.0041 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|+|++||||||+.+.|+..+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998643
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.0046 Score=57.46 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
++.+|+|+||+|+||||++..|+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998753
No 402
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.24 E-value=0.022 Score=51.98 Aligned_cols=37 Identities=27% Similarity=0.191 Sum_probs=28.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGD 117 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~dd 117 (284)
-++..++.|.|+|||||||+|..++... | +.++++..
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 4567899999999999999999887543 2 45666543
No 403
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.24 E-value=0.0053 Score=55.47 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=25.0
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
....+.+|.|+|++||||||++..|+..+
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44567899999999999999999988765
No 404
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.23 E-value=0.0044 Score=52.68 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+..+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999998643
No 405
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.0052 Score=55.35 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.-.|++.||.|||||-+|+-||+.+++++--.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 34799999999999999999999999987543
No 406
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.23 E-value=0.0051 Score=51.54 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=25.3
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
....++-+++|+||+|+||||+.++|....
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 345667789999999999999999997654
No 407
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.22 E-value=0.0039 Score=54.67 Aligned_cols=32 Identities=16% Similarity=0.380 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
|+.|++.||||+|||-+|+.|+.+.+.+.+.+
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~v 182 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLV 182 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEe
Confidence 67899999999999999999999998887654
No 408
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.22 E-value=0.0052 Score=62.57 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.++.+++|.||||+||||+++.+++.++..++.
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~ 379 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVR 379 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 355689999999999999999999999877643
No 409
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.21 E-value=0.0054 Score=52.20 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=24.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
...+++|.|+|++||||||+.+.+.+.++
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34678999999999999999999987753
No 410
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.12 Score=47.81 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
..+..++|.|++|+||||+++.|++.++.
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34568999999999999999999998765
No 411
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.21 E-value=0.082 Score=47.94 Aligned_cols=30 Identities=20% Similarity=0.017 Sum_probs=25.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
..-+..++|.|+.|+||+|+|+.+++.+.+
T Consensus 23 ~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 23 NRFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred CCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 344578899999999999999999998744
No 412
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.21 E-value=0.0046 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|++||||||+.+.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 345679999999999999999999754
No 413
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.20 E-value=0.0044 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+|.|+|++||||||++..|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998865
No 414
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0047 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|+|+.||||||+.+.|+..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999854
No 415
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.19 E-value=0.0046 Score=52.71 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+..+
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998543
No 416
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.19 E-value=0.0062 Score=51.70 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGD 117 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~dd 117 (284)
++..++.|.|+||||||++|..++... .+.++++..
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 456799999999999999999987543 356777653
No 417
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.19 E-value=0.0048 Score=47.13 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHH
Q 023307 86 KIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~ 106 (284)
.|+|.|.+|+||||+.+.|..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999985
No 418
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.0047 Score=53.54 Aligned_cols=28 Identities=29% Similarity=0.235 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998543
No 419
>COG4240 Predicted kinase [General function prediction only]
Probab=96.17 E-value=0.0074 Score=51.91 Aligned_cols=41 Identities=32% Similarity=0.338 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH----h--CCcEeehhHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK----Y--GLVHIAAGDLLRAE 122 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~----~--~~~~is~ddlir~~ 122 (284)
.+|.++.|.||-||||||++-.|... . ....+|+||++...
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlth 94 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTH 94 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcch
Confidence 56899999999999999998766443 2 34678889987553
No 420
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.17 E-value=0.0077 Score=52.79 Aligned_cols=37 Identities=27% Similarity=0.523 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDLLRA 121 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddlir~ 121 (284)
..++|.|++|+|||+++..|+..+ | +.++++.+++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 468999999999999999999877 3 456677777654
No 421
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.17 E-value=0.0067 Score=43.95 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCcEeehh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY---GLVHIAAG 116 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~---~~~~is~d 116 (284)
+|++.|..|+||||++..|+..+ |..++-+|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 37889999999999999999877 66665545
No 422
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0051 Score=51.02 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+..
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999854
No 423
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.16 E-value=0.005 Score=53.03 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|+|+.||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456789999999999999999998765
No 424
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.15 E-value=0.013 Score=56.77 Aligned_cols=88 Identities=20% Similarity=0.174 Sum_probs=48.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCc-----C----hH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV-----P----DE 146 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~-----~----~~ 146 (284)
-+++..++|.|+||+|||+++..++... .+.++++.+-.......-...|..+.++...+... + -+
T Consensus 270 ~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~ 349 (509)
T PRK09302 270 FFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLE 349 (509)
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHH
Confidence 3456789999999999999998876443 45666654332222221112233333443333211 1 12
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEeC
Q 023307 147 IVVTMVKERLSQPDSQENGWLLDG 170 (284)
Q Consensus 147 ~~~~~l~~~i~~~~~~~~g~IlDg 170 (284)
.....+.+.+.+.. .+-+|||+
T Consensus 350 ~~~~~i~~~i~~~~--~~~vVIDs 371 (509)
T PRK09302 350 DHLIIIKREIEEFK--PSRVAIDP 371 (509)
T ss_pred HHHHHHHHHHHHcC--CCEEEEcC
Confidence 33444555554432 36799997
No 425
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0051 Score=52.40 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999854
No 426
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.14 E-value=0.0047 Score=53.49 Aligned_cols=27 Identities=22% Similarity=0.096 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|.|+.||||||+.+.|+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 345678999999999999999999854
No 427
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.14 E-value=0.0051 Score=52.65 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+-+++|+|++||||||+.+.|+.-+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998543
No 428
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.14 E-value=0.005 Score=53.55 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+..+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3456789999999999999999998543
No 429
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.14 E-value=0.0066 Score=51.91 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~d 116 (284)
..+.++.|.|+||+||||+|..++... .+.+++.+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 556799999999999999999998654 34466543
No 430
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.14 E-value=0.005 Score=53.44 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+.-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999854
No 431
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.13 E-value=0.0052 Score=52.28 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|+|+.||||||+.+.|+-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998543
No 432
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.13 E-value=0.005 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.++.|.|+.||||||+.+.|+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 45568999999999999999999854
No 433
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.13 E-value=0.0053 Score=52.26 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998643
No 434
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.13 E-value=0.0052 Score=52.62 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|+|+.||||||+.+.|+..+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998643
No 435
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.13 E-value=0.0047 Score=52.64 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.++.|+|+.||||||+.+.|+..
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 345678999999999999999999754
No 436
>PRK06921 hypothetical protein; Provisional
Probab=96.13 E-value=0.0089 Score=53.09 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh----CC--cEeehhHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY----GL--VHIAAGDLLRA 121 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~----~~--~~is~ddlir~ 121 (284)
....++|.|++|+|||+++..++..+ |. .+++..+++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 35679999999999999999998764 33 45555555543
No 437
>PHA02624 large T antigen; Provisional
Probab=96.12 E-value=0.0099 Score=58.11 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=31.0
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~d 116 (284)
..++...|+|.||||+||||+++.|.+.+|-.++++.
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN 463 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN 463 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee
Confidence 3456679999999999999999999999966667653
No 438
>PRK04296 thymidine kinase; Provisional
Probab=96.12 E-value=0.0058 Score=51.41 Aligned_cols=25 Identities=32% Similarity=0.231 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+.+++++|++|+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999998888766
No 439
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.12 E-value=0.032 Score=54.15 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=27.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh----C--CcEeehhH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY----G--LVHIAAGD 117 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~----~--~~~is~dd 117 (284)
-+++..++|.|+||+|||++|..++... | +.|+++.+
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 4567799999999999999998775421 3 45666533
No 440
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.12 E-value=0.0051 Score=52.12 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|+|+.||||||+.+.|+.-
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 441
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.12 E-value=0.0053 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.++.|.|++||||||+.+.|+-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998643
No 442
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.12 E-value=0.006 Score=56.76 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
.++.+|.|+|.+||||||++..|.+++.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999988775
No 443
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.11 E-value=0.0072 Score=48.58 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=26.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
-..+.+|++.|.-||||||++|-|++.+|.
T Consensus 22 l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 22 LKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 346679999999999999999999999984
No 444
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.061 Score=49.73 Aligned_cols=42 Identities=33% Similarity=0.509 Sum_probs=31.6
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCc-EeehhHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY---GLV-HIAAGDLLRA 121 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~---~~~-~is~ddlir~ 121 (284)
...+|.+|.++|.-|+||||.|-.||-+| |+. .+-..|.+|.
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 44577899999999999999999999877 443 3334555554
No 445
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=96.10 E-value=0.024 Score=47.56 Aligned_cols=36 Identities=28% Similarity=0.469 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh------CCcEeehhHHHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKY------GLVHIAAGDLLRA 121 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~------~~~~is~ddlir~ 121 (284)
.+.++|.|++||||+|+.|.-.. .+.++..||.+..
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmd 44 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMD 44 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhh
Confidence 57899999999999999885432 2455666776643
No 446
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.10 E-value=0.0056 Score=51.51 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|.|++||||||+.+.|+..+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 455689999999999999999998643
No 447
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.0054 Score=53.08 Aligned_cols=28 Identities=29% Similarity=0.234 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+-.+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999998543
No 448
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.09 E-value=0.0052 Score=52.80 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=24.3
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.+++|.|+.||||||+.+.|+..+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33556799999999999999999998543
No 449
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0053 Score=52.64 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999854
No 450
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0059 Score=50.41 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999864
No 451
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0065 Score=56.77 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=27.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
-.|++.||.|||||-+|+-||+-+++++.-.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIc 257 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAIC 257 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEe
Confidence 4799999999999999999999999987643
No 452
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0051 Score=52.32 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.+ +++|.|++||||||+.+.|+.-
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 35 8999999999999999999853
No 453
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.05 Score=54.31 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
=|++.||||+|||-+||.+|-++.+.++++
T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL~FlSV 736 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATECSLNFLSV 736 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhceeeEEee
Confidence 599999999999999999999999988886
No 454
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0056 Score=53.21 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.++.|.|+.||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998643
No 455
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.07 E-value=0.0059 Score=50.59 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=24.3
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.+++|.|++||||||+.+.|+..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33456789999999999999999998653
No 456
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.07 E-value=0.006 Score=50.07 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|+|+.||||||+.+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998653
No 457
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.06 E-value=0.004 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~ 108 (284)
--+|+|||||||||.|.-..+-|
T Consensus 4 gqvVIGPPgSGKsTYc~g~~~fl 26 (290)
T KOG1533|consen 4 GQVVIGPPGSGKSTYCNGMSQFL 26 (290)
T ss_pred ceEEEcCCCCCccchhhhHHHHH
Confidence 35789999999999997766544
No 458
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0058 Score=52.83 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998654
No 459
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.06 E-value=0.0054 Score=52.06 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+++|+||.|+||||+.+.|+-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999974
No 460
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.06 E-value=0.0058 Score=53.00 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345679999999999999999999854
No 461
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.06 E-value=0.008 Score=50.43 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=23.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH----HhCCcEee
Q 023307 84 PLKIMISGAPASGKGTQCELIKE----KYGLVHIA 114 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~----~~~~~~is 114 (284)
...|.|.||||||||++...+.+ +|.+.++-
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~ 47 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVIT 47 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEe
Confidence 37899999999999998766554 45666554
No 462
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.006 Score=52.30 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999854
No 463
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.06 E-value=0.017 Score=49.59 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAAGD 117 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~dd 117 (284)
+.+.+++|.|+||+|||++|..++... | +.++++.+
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 456789999999999999998876542 3 44666543
No 464
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.05 E-value=0.006 Score=50.77 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+.+++|.|+.||||||+.+.+..
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4556899999999999999999853
No 465
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.03 E-value=0.039 Score=52.67 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLRA 121 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir~ 121 (284)
..++|.|++|+|||++++.++.++ .+.+++.+++...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH
Confidence 358899999999999999999865 3456666555443
No 466
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.03 E-value=0.0061 Score=52.21 Aligned_cols=26 Identities=35% Similarity=0.219 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|.|+.||||||+.+.|+.-
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44578999999999999999999853
No 467
>PRK05642 DNA replication initiation factor; Validated
Probab=96.03 E-value=0.0099 Score=51.72 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDLLR 120 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddlir 120 (284)
..++|.|++|+|||.+++.++.++ .+.|++.+++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 468999999999999999987643 567888877764
No 468
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.03 E-value=0.0062 Score=52.48 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+.-
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345678999999999999999999853
No 469
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.03 E-value=0.0064 Score=51.40 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=24.2
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.+++|.|++||||||+.+.|+..+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 23 HLPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33566799999999999999999998543
No 470
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.02 E-value=0.02 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
+.+|.|+||.|+||||....||.+|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67999999999999998888888775
No 471
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0063 Score=51.16 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+.+++|+|++||||||+.+.|+-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999984
No 472
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.02 E-value=0.0063 Score=52.52 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|+|+.||||||+.+.|+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999854
No 473
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.01 E-value=0.0061 Score=52.57 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=24.3
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.+++|.|++||||||+.+.|+..+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33456799999999999999999998543
No 474
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0051 Score=57.65 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
=.+|.||||+|||++..++|..+++-+.++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 379999999999999999999998877653
No 475
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.01 E-value=0.0055 Score=58.08 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
....|+|.|+||+|||++|+.|+..++
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 356799999999999999999998874
No 476
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.00 E-value=0.0062 Score=52.93 Aligned_cols=27 Identities=26% Similarity=0.198 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999854
No 477
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.00 E-value=0.0069 Score=49.98 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|.|+.||||||+.+.|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3456789999999999999999998654
No 478
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.00 E-value=0.0063 Score=53.02 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|.|++||||||+.+.|+..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998643
No 479
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.99 E-value=0.0067 Score=51.47 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+.-
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999853
No 480
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.99 E-value=0.0066 Score=52.31 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+..+
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3456799999999999999999998643
No 481
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.99 E-value=0.0075 Score=56.99 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
++.+|+++|++|+||||++..||..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998766
No 482
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.99 E-value=0.0064 Score=53.55 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+-+++|+|+.||||||+.+.|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999854
No 483
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.99 E-value=0.0073 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+++|.|+|.+|||||||+..|...+
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999877
No 484
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.99 E-value=0.0065 Score=53.15 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3456789999999999999999998653
No 485
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.0072 Score=56.81 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
-+.-++|.||+|+||||+|+.|++.+.+.
T Consensus 37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 37 VGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34569999999999999999999998764
No 486
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.98 E-value=0.0063 Score=53.33 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|.|++||||||+.+.|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998654
No 487
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.98 E-value=0.0065 Score=55.93 Aligned_cols=32 Identities=25% Similarity=0.500 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CcEe
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG--LVHI 113 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~--~~~i 113 (284)
..+..|+|.||||+|||.+|-.+++++| +|+.
T Consensus 48 ~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 3468999999999999999999999996 4443
No 488
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.98 E-value=0.12 Score=45.16 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CCcEee
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY---GLVHIA 114 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~---~~~~is 114 (284)
...++|.|..|+|||++.+.|..+| |+..|.
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIe 85 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIE 85 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEE
Confidence 4579999999999999999999887 555553
No 489
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.0063 Score=53.31 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+.-
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 345678999999999999999999854
No 490
>PRK10867 signal recognition particle protein; Provisional
Probab=95.98 E-value=0.0081 Score=56.95 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..|.+|+++|++|+||||++..||..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 346899999999999999887777644
No 491
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.97 E-value=0.0069 Score=61.38 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=25.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
.++|.||+|+|||++|+.||+.++.+++
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i 517 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcE
Confidence 6899999999999999999999976654
No 492
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0064 Score=51.56 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|++||||||+.+.|+..+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence 3556799999999999999999998653
No 493
>PRK09354 recA recombinase A; Provisional
Probab=95.95 E-value=0.031 Score=51.49 Aligned_cols=38 Identities=21% Similarity=0.072 Sum_probs=28.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehhHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAGDL 118 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ddl 118 (284)
-++..++.|.|++||||||+|-.++... .+.||++..-
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s 99 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHA 99 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc
Confidence 4567899999999999999998876543 2456665443
No 494
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.95 E-value=0.0074 Score=51.32 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
....++|.|+||+|||++|+.|..-+
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999998654
No 495
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.95 E-value=0.0069 Score=52.94 Aligned_cols=28 Identities=25% Similarity=0.127 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|++||||||+.+.|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456789999999999999999998643
No 496
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.95 E-value=0.0069 Score=52.69 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.++.|.|++||||||+.+.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998543
No 497
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.95 E-value=0.0075 Score=50.11 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|.|++||||||+.+.|+..+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3456789999999999999999998643
No 498
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.94 E-value=0.0071 Score=52.08 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.+++|+|++||||||+.+.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998643
No 499
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.94 E-value=0.0074 Score=49.39 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.++.|.|+.||||||+.+.|+..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999754
No 500
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.0079 Score=56.17 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
++.+|+|+|+.|+||||++..|+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999998766
Done!