Query 023307
Match_columns 284
No_of_seqs 239 out of 2089
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gmt_A Adenylate kinase; ssgci 100.0 4.5E-38 1.5E-42 270.4 19.2 197 84-281 8-221 (230)
2 3sr0_A Adenylate kinase; phosp 100.0 1E-37 3.5E-42 265.4 19.7 189 85-280 1-195 (206)
3 3umf_A Adenylate kinase; rossm 100.0 1.8E-35 6E-40 253.2 18.1 178 80-280 25-204 (217)
4 3tlx_A Adenylate kinase 2; str 100.0 1.2E-32 4.1E-37 239.9 19.2 200 81-281 26-235 (243)
5 3be4_A Adenylate kinase; malar 100.0 1.8E-31 6.2E-36 228.3 19.9 198 82-280 3-210 (217)
6 3dl0_A Adenylate kinase; phosp 100.0 1.8E-31 6.1E-36 227.6 19.0 195 85-280 1-205 (216)
7 3fb4_A Adenylate kinase; psych 100.0 4.6E-31 1.6E-35 224.9 19.5 195 85-280 1-205 (216)
8 1e4v_A Adenylate kinase; trans 100.0 5.1E-31 1.7E-35 224.8 18.5 195 85-280 1-206 (214)
9 1zak_A Adenylate kinase; ATP:A 100.0 5.1E-31 1.8E-35 226.0 17.0 199 82-280 3-201 (222)
10 1aky_A Adenylate kinase; ATP:A 100.0 1.1E-29 3.7E-34 217.4 19.5 198 83-280 3-210 (220)
11 1ak2_A Adenylate kinase isoenz 100.0 2.3E-29 8E-34 217.5 21.7 198 82-280 14-221 (233)
12 1zd8_A GTP:AMP phosphotransfer 100.0 1.6E-28 5.6E-33 211.2 19.1 195 81-279 4-204 (227)
13 2xb4_A Adenylate kinase; ATP-b 100.0 1.9E-29 6.5E-34 216.8 13.2 194 85-280 1-215 (223)
14 2c95_A Adenylate kinase 1; tra 99.9 2.2E-24 7.6E-29 180.2 18.9 175 82-279 7-183 (196)
15 2cdn_A Adenylate kinase; phosp 99.9 3E-24 1E-28 180.9 19.2 172 81-280 17-192 (201)
16 1ukz_A Uridylate kinase; trans 99.9 8.4E-24 2.9E-28 178.2 19.1 177 81-280 12-192 (203)
17 1qf9_A UMP/CMP kinase, protein 99.9 3.1E-23 1.1E-27 172.5 20.7 173 83-280 5-182 (194)
18 2bwj_A Adenylate kinase 5; pho 99.9 2.2E-23 7.6E-28 174.5 17.9 174 83-279 11-186 (199)
19 3cm0_A Adenylate kinase; ATP-b 99.9 7.6E-23 2.6E-27 169.7 18.7 169 83-280 3-177 (186)
20 1tev_A UMP-CMP kinase; ploop, 99.9 1.1E-22 3.8E-27 169.3 19.4 175 83-280 2-185 (196)
21 2bbw_A Adenylate kinase 4, AK4 99.9 7.8E-21 2.7E-25 165.1 20.1 193 83-279 26-224 (246)
22 3lw7_A Adenylate kinase relate 99.8 2.7E-17 9.3E-22 133.8 17.9 160 85-278 2-165 (179)
23 2z0h_A DTMP kinase, thymidylat 99.7 6.9E-16 2.3E-20 128.5 14.8 156 85-279 1-181 (197)
24 2pbr_A DTMP kinase, thymidylat 99.7 2.2E-15 7.7E-20 124.9 16.0 118 85-208 1-143 (195)
25 4eaq_A DTMP kinase, thymidylat 99.7 1.7E-15 5.7E-20 130.4 14.8 167 82-280 24-215 (229)
26 4hlc_A DTMP kinase, thymidylat 99.7 1.1E-15 3.9E-20 129.2 13.5 165 84-280 2-191 (205)
27 1nks_A Adenylate kinase; therm 99.6 2.1E-15 7E-20 124.9 13.7 116 85-207 2-136 (194)
28 3vaa_A Shikimate kinase, SK; s 99.6 1.5E-15 5.3E-20 127.4 12.4 153 82-274 23-179 (199)
29 4edh_A DTMP kinase, thymidylat 99.6 2.3E-15 7.9E-20 128.1 12.8 166 82-280 4-197 (213)
30 3v9p_A DTMP kinase, thymidylat 99.6 3.5E-16 1.2E-20 134.4 7.4 166 82-280 23-217 (227)
31 1ly1_A Polynucleotide kinase; 99.6 1.1E-14 3.8E-19 119.2 15.2 152 84-278 2-162 (181)
32 3t61_A Gluconokinase; PSI-biol 99.6 6.5E-15 2.2E-19 123.6 11.7 113 84-210 18-133 (202)
33 4tmk_A Protein (thymidylate ki 99.6 9.3E-15 3.2E-19 124.3 11.2 165 83-281 2-198 (213)
34 3trf_A Shikimate kinase, SK; a 99.6 1.3E-14 4.4E-19 119.8 11.7 110 84-206 5-116 (185)
35 3lv8_A DTMP kinase, thymidylat 99.6 1.2E-15 4E-20 131.8 5.5 170 81-280 24-219 (236)
36 3kb2_A SPBC2 prophage-derived 99.6 1.9E-14 6.4E-19 117.0 12.3 139 85-279 2-156 (173)
37 1y63_A LMAJ004144AAA protein; 99.6 3.3E-14 1.1E-18 117.8 13.9 113 80-209 6-122 (184)
38 3hjn_A DTMP kinase, thymidylat 99.6 3.5E-14 1.2E-18 119.3 13.9 159 85-281 1-183 (197)
39 1kht_A Adenylate kinase; phosp 99.6 1.5E-14 5.3E-19 119.5 11.4 117 84-207 3-135 (192)
40 2rhm_A Putative kinase; P-loop 99.6 1.8E-14 6.3E-19 119.4 11.7 121 82-209 3-126 (193)
41 1e6c_A Shikimate kinase; phosp 99.6 9.2E-14 3.2E-18 113.2 15.7 109 85-208 3-116 (173)
42 2wwf_A Thymidilate kinase, put 99.6 2.2E-16 7.5E-21 133.1 -0.0 125 82-208 8-151 (212)
43 2plr_A DTMP kinase, probable t 99.6 6.3E-14 2.2E-18 117.7 14.5 121 83-209 3-144 (213)
44 2v54_A DTMP kinase, thymidylat 99.5 2.4E-14 8E-19 119.9 10.1 112 83-203 3-137 (204)
45 2iyv_A Shikimate kinase, SK; t 99.5 6.1E-14 2.1E-18 115.7 10.8 110 85-209 3-115 (184)
46 1ltq_A Polynucleotide kinase; 99.5 4.5E-14 1.5E-18 125.6 10.3 122 84-209 2-127 (301)
47 3ld9_A DTMP kinase, thymidylat 99.5 4.2E-13 1.4E-17 114.7 15.0 164 79-279 16-206 (223)
48 1nn5_A Similar to deoxythymidy 99.5 4.8E-14 1.7E-18 118.8 9.0 121 82-208 7-150 (215)
49 1zuh_A Shikimate kinase; alpha 99.5 8.9E-14 3.1E-18 113.1 9.5 106 84-208 7-117 (168)
50 3iij_A Coilin-interacting nucl 99.5 9.2E-14 3.2E-18 114.3 9.3 110 82-209 9-118 (180)
51 2f6r_A COA synthase, bifunctio 99.5 1.7E-13 5.7E-18 121.3 11.6 122 81-209 72-221 (281)
52 1vht_A Dephospho-COA kinase; s 99.5 8.7E-14 3E-18 118.0 8.7 118 83-209 3-147 (218)
53 2pt5_A Shikimate kinase, SK; a 99.5 3.5E-13 1.2E-17 109.3 11.3 110 85-209 1-114 (168)
54 1jjv_A Dephospho-COA kinase; P 99.5 2E-13 6.9E-18 114.7 9.9 117 84-209 2-145 (206)
55 1knq_A Gluconate kinase; ALFA/ 99.5 3.4E-12 1.2E-16 104.3 16.6 116 82-209 6-125 (175)
56 4eun_A Thermoresistant glucoki 99.4 1E-12 3.5E-17 110.1 13.4 116 80-210 25-147 (200)
57 1via_A Shikimate kinase; struc 99.4 1.6E-13 5.5E-18 112.4 8.2 107 85-208 5-113 (175)
58 4i1u_A Dephospho-COA kinase; s 99.4 6.9E-13 2.4E-17 112.2 12.0 119 83-209 8-153 (210)
59 3a4m_A L-seryl-tRNA(SEC) kinas 99.4 5E-13 1.7E-17 116.8 11.0 111 83-209 3-121 (260)
60 1cke_A CK, MSSA, protein (cyti 99.4 1.3E-12 4.4E-17 111.1 13.3 115 84-206 5-159 (227)
61 3tmk_A Thymidylate kinase; pho 99.4 2.5E-13 8.5E-18 115.7 8.2 162 83-280 4-193 (216)
62 3nwj_A ATSK2; P loop, shikimat 99.4 9.2E-13 3.1E-17 114.6 11.8 112 84-208 48-162 (250)
63 2if2_A Dephospho-COA kinase; a 99.4 4.2E-13 1.4E-17 112.5 8.9 117 85-209 2-145 (204)
64 2jaq_A Deoxyguanosine kinase; 99.4 4.6E-12 1.6E-16 105.6 14.4 30 85-114 1-30 (205)
65 3fdi_A Uncharacterized protein 99.4 2.6E-12 8.9E-17 108.2 10.8 118 83-208 5-137 (201)
66 1kag_A SKI, shikimate kinase I 99.4 9.7E-13 3.3E-17 107.2 7.9 112 84-209 4-118 (173)
67 2vli_A Antibiotic resistance p 99.4 3.4E-12 1.2E-16 104.8 10.4 113 82-209 3-126 (183)
68 2qor_A Guanylate kinase; phosp 99.3 4.6E-12 1.6E-16 106.4 10.7 140 82-257 10-167 (204)
69 1uf9_A TT1252 protein; P-loop, 99.3 3.7E-12 1.3E-16 106.2 9.7 119 81-209 5-146 (203)
70 3ake_A Cytidylate kinase; CMP 99.3 3.2E-11 1.1E-15 100.9 14.6 114 86-209 4-157 (208)
71 3hdt_A Putative kinase; struct 99.3 1.7E-11 5.9E-16 104.8 12.8 41 83-124 13-53 (223)
72 2qt1_A Nicotinamide riboside k 99.3 1.7E-12 5.9E-17 109.1 5.8 119 81-209 18-151 (207)
73 4e22_A Cytidylate kinase; P-lo 99.3 2.2E-11 7.4E-16 105.9 11.6 42 82-123 25-66 (252)
74 1uj2_A Uridine-cytidine kinase 99.3 1.8E-11 6.1E-16 106.3 10.0 117 81-209 19-172 (252)
75 2h92_A Cytidylate kinase; ross 99.3 1.7E-11 5.9E-16 103.7 9.5 40 83-122 2-41 (219)
76 1qhx_A CPT, protein (chloramph 99.2 1.2E-10 4E-15 95.1 13.8 124 83-209 2-134 (178)
77 2grj_A Dephospho-COA kinase; T 99.2 5.5E-11 1.9E-15 99.3 11.6 43 83-125 11-53 (192)
78 1q3t_A Cytidylate kinase; nucl 99.2 8.1E-11 2.8E-15 101.1 12.0 42 81-122 13-54 (236)
79 2p5t_B PEZT; postsegregational 99.2 4.9E-11 1.7E-15 103.6 9.4 120 81-209 29-158 (253)
80 1gvn_B Zeta; postsegregational 99.2 2.1E-10 7.3E-15 101.6 13.3 119 81-208 30-162 (287)
81 3zvl_A Bifunctional polynucleo 99.2 7.8E-11 2.7E-15 109.7 10.1 101 81-209 255-358 (416)
82 1p5z_B DCK, deoxycytidine kina 99.2 1.2E-12 4.2E-17 114.3 -2.3 33 82-114 22-55 (263)
83 1m7g_A Adenylylsulfate kinase; 99.1 1.2E-09 4.1E-14 92.0 14.8 110 80-205 21-149 (211)
84 3r20_A Cytidylate kinase; stru 99.1 9.9E-10 3.4E-14 94.4 14.0 42 82-123 7-48 (233)
85 2ze6_A Isopentenyl transferase 99.1 2.6E-10 8.9E-15 99.2 9.4 121 85-209 2-139 (253)
86 3uie_A Adenylyl-sulfate kinase 99.1 2.6E-09 8.8E-14 89.2 14.5 113 80-205 21-140 (200)
87 1gtv_A TMK, thymidylate kinase 99.1 1.6E-11 5.5E-16 103.2 0.9 123 85-209 1-154 (214)
88 2yvu_A Probable adenylyl-sulfa 99.0 4.1E-09 1.4E-13 86.7 13.9 108 82-206 11-131 (186)
89 1x6v_B Bifunctional 3'-phospho 99.0 6.8E-09 2.3E-13 100.8 16.3 113 82-206 50-170 (630)
90 2pez_A Bifunctional 3'-phospho 99.0 1.1E-09 3.8E-14 89.7 9.2 112 82-207 3-124 (179)
91 1ex7_A Guanylate kinase; subst 99.0 2.6E-11 8.8E-16 100.8 -1.4 136 87-257 4-155 (186)
92 2ocp_A DGK, deoxyguanosine kin 99.0 5.5E-10 1.9E-14 96.0 6.7 30 83-112 1-31 (241)
93 2axn_A 6-phosphofructo-2-kinas 99.0 5.8E-10 2E-14 106.6 6.5 119 83-209 34-169 (520)
94 2vp4_A Deoxynucleoside kinase; 98.9 1.4E-09 4.8E-14 93.0 7.4 26 82-107 18-43 (230)
95 3tr0_A Guanylate kinase, GMP k 98.9 3.1E-09 1.1E-13 88.5 8.9 120 83-209 6-140 (205)
96 3tau_A Guanylate kinase, GMP k 98.9 2E-09 6.8E-14 90.6 7.7 28 82-109 6-33 (208)
97 2j41_A Guanylate kinase; GMP, 98.9 1.3E-10 4.4E-15 97.1 -1.8 27 82-108 4-30 (207)
98 1p6x_A Thymidine kinase; P-loo 98.8 1.8E-08 6.2E-13 90.8 10.5 29 82-110 5-33 (334)
99 1a7j_A Phosphoribulokinase; tr 98.8 2.3E-09 8E-14 95.0 4.3 38 83-120 4-46 (290)
100 2gks_A Bifunctional SAT/APS ki 98.8 5.4E-08 1.8E-12 93.5 13.4 113 82-206 370-488 (546)
101 2bdt_A BH3686; alpha-beta prot 98.8 1.4E-08 4.7E-13 83.7 7.4 116 85-210 3-124 (189)
102 1rz3_A Hypothetical protein rb 98.7 6.4E-08 2.2E-12 80.8 10.4 117 81-208 19-164 (201)
103 3ch4_B Pmkase, phosphomevalona 98.7 6.7E-08 2.3E-12 80.8 10.2 116 83-205 10-144 (202)
104 3a00_A Guanylate kinase, GMP k 98.7 6.1E-09 2.1E-13 86.0 3.3 24 85-108 2-25 (186)
105 1zp6_A Hypothetical protein AT 98.7 8.3E-08 2.8E-12 78.9 9.8 121 80-209 5-127 (191)
106 3a8t_A Adenylate isopentenyltr 98.7 1.8E-08 6.1E-13 90.8 6.1 37 82-118 38-74 (339)
107 1of1_A Thymidine kinase; trans 98.6 1.1E-06 3.9E-11 80.1 15.1 29 81-109 46-74 (376)
108 1m8p_A Sulfate adenylyltransfe 98.6 3.9E-07 1.4E-11 87.9 12.8 111 82-205 394-513 (573)
109 3asz_A Uridine kinase; cytidin 98.5 3.5E-07 1.2E-11 76.4 9.8 38 82-119 4-43 (211)
110 3lnc_A Guanylate kinase, GMP k 98.5 4.5E-07 1.5E-11 77.1 9.0 27 82-108 25-52 (231)
111 1osn_A Thymidine kinase, VZV-T 98.5 2.8E-07 9.5E-12 83.2 7.9 29 82-110 10-39 (341)
112 1bif_A 6-phosphofructo-2-kinas 98.4 3E-07 1E-11 86.7 7.9 120 82-208 37-172 (469)
113 1sq5_A Pantothenate kinase; P- 98.4 3E-06 1E-10 75.4 13.6 37 82-118 78-121 (308)
114 1e2k_A Thymidine kinase; trans 98.4 5.9E-06 2E-10 74.3 15.0 28 82-109 2-29 (331)
115 3tqc_A Pantothenate kinase; bi 98.4 4.1E-07 1.4E-11 81.6 7.1 38 81-118 89-133 (321)
116 3c8u_A Fructokinase; YP_612366 98.4 1.3E-06 4.5E-11 73.1 8.9 37 82-118 20-61 (208)
117 3czq_A Putative polyphosphate 98.3 5.5E-07 1.9E-11 79.7 6.3 147 82-275 84-261 (304)
118 1s96_A Guanylate kinase, GMP k 98.3 1.5E-05 5E-10 67.6 13.6 29 81-109 13-41 (219)
119 4gp7_A Metallophosphoesterase; 98.2 3E-05 1E-09 62.7 12.4 113 82-209 7-122 (171)
120 2jeo_A Uridine-cytidine kinase 98.1 8.8E-06 3E-10 69.8 8.9 32 80-111 21-52 (245)
121 1kgd_A CASK, peripheral plasma 98.1 9.3E-07 3.2E-11 72.3 2.5 27 83-109 4-30 (180)
122 3cr8_A Sulfate adenylyltranfer 98.1 3.2E-06 1.1E-10 81.2 6.5 38 82-119 367-410 (552)
123 1lvg_A Guanylate kinase, GMP k 98.0 4.4E-05 1.5E-09 63.3 11.4 25 84-108 4-28 (198)
124 3crm_A TRNA delta(2)-isopenten 98.0 2.6E-06 9.1E-11 76.3 3.8 35 84-118 5-39 (323)
125 3d3q_A TRNA delta(2)-isopenten 98.0 3.5E-06 1.2E-10 75.9 3.5 34 85-118 8-41 (340)
126 3ney_A 55 kDa erythrocyte memb 97.9 1.3E-05 4.3E-10 66.9 6.2 29 81-109 16-44 (197)
127 1dek_A Deoxynucleoside monopho 97.9 9.1E-06 3.1E-10 69.9 5.3 40 85-124 2-41 (241)
128 3exa_A TRNA delta(2)-isopenten 97.9 6.6E-06 2.3E-10 73.3 3.6 36 83-118 2-37 (322)
129 3foz_A TRNA delta(2)-isopenten 97.9 9.2E-06 3.1E-10 72.2 4.5 38 81-118 7-44 (316)
130 3czp_A Putative polyphosphate 97.8 2.8E-05 9.5E-10 73.6 7.4 107 81-211 40-171 (500)
131 3czp_A Putative polyphosphate 97.8 3E-05 1E-09 73.3 7.4 150 81-274 297-474 (500)
132 3rhf_A Putative polyphosphate 97.8 5.2E-05 1.8E-09 66.3 7.7 148 83-274 74-249 (289)
133 3t15_A Ribulose bisphosphate c 97.7 3.1E-05 1.1E-09 68.3 4.4 33 82-114 34-66 (293)
134 4b4t_J 26S protease regulatory 97.5 6.8E-05 2.3E-09 69.0 5.1 32 84-115 182-213 (405)
135 3eph_A TRNA isopentenyltransfe 97.5 4.9E-05 1.7E-09 69.9 4.1 34 84-117 2-35 (409)
136 1g8f_A Sulfate adenylyltransfe 97.5 6.6E-05 2.3E-09 71.3 4.1 36 82-117 393-435 (511)
137 3ec2_A DNA replication protein 97.5 0.00016 5.4E-09 58.6 5.8 39 83-121 37-81 (180)
138 4b4t_M 26S protease regulatory 97.5 8.6E-05 3E-09 69.1 4.7 33 83-115 214-246 (434)
139 2ga8_A Hypothetical 39.9 kDa p 97.4 4.6E-05 1.6E-09 69.0 2.6 31 82-112 22-52 (359)
140 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0001 3.6E-09 63.0 4.7 32 83-114 38-69 (262)
141 1lv7_A FTSH; alpha/beta domain 97.4 0.0001 3.4E-09 63.3 4.5 32 84-115 45-76 (257)
142 2chg_A Replication factor C sm 97.4 0.0022 7.6E-08 52.4 12.6 24 85-108 39-62 (226)
143 4b4t_K 26S protease regulatory 97.4 0.0001 3.4E-09 68.5 4.7 33 83-115 205-237 (428)
144 4b4t_L 26S protease subunit RP 97.4 9.3E-05 3.2E-09 68.9 4.4 33 83-115 214-246 (437)
145 1odf_A YGR205W, hypothetical 3 97.4 0.00011 3.8E-09 64.8 4.6 39 81-119 28-74 (290)
146 3cf0_A Transitional endoplasmi 97.3 0.00014 4.8E-09 64.2 4.5 39 82-120 47-87 (301)
147 3h4m_A Proteasome-activating n 97.3 0.00015 5.2E-09 63.0 4.4 33 82-114 49-81 (285)
148 3b9p_A CG5977-PA, isoform A; A 97.3 0.00016 5.3E-09 63.3 4.5 31 84-114 54-84 (297)
149 2x8a_A Nuclear valosin-contain 97.3 0.00016 5.6E-09 63.0 4.6 28 87-114 47-74 (274)
150 4b4t_I 26S protease regulatory 97.3 0.00016 5.6E-09 66.9 4.4 32 84-115 216-247 (437)
151 4b4t_H 26S protease regulatory 97.3 0.00015 5.2E-09 67.7 4.2 33 83-115 242-274 (467)
152 1ye8_A Protein THEP1, hypothet 97.3 0.00017 5.7E-09 58.9 3.9 28 85-112 1-28 (178)
153 3hws_A ATP-dependent CLP prote 97.3 0.00016 5.5E-09 65.4 4.1 32 84-115 51-82 (363)
154 1d2n_A N-ethylmaleimide-sensit 97.3 0.0002 6.8E-09 62.0 4.5 35 81-115 61-95 (272)
155 2qmh_A HPR kinase/phosphorylas 97.3 0.00015 5.1E-09 60.4 3.4 34 82-116 32-65 (205)
156 3eie_A Vacuolar protein sortin 97.2 0.00021 7.2E-09 63.7 4.4 32 84-115 51-82 (322)
157 1g41_A Heat shock protein HSLU 97.2 0.00018 6.2E-09 67.1 3.9 33 84-116 50-82 (444)
158 1jbk_A CLPB protein; beta barr 97.2 0.00031 1.1E-08 56.3 4.8 27 82-108 41-67 (195)
159 2p65_A Hypothetical protein PF 97.2 0.00025 8.7E-09 56.8 3.9 27 82-108 41-67 (187)
160 1ofh_A ATP-dependent HSL prote 97.2 0.00026 8.8E-09 61.9 4.1 31 84-114 50-80 (310)
161 2w58_A DNAI, primosome compone 97.2 0.00053 1.8E-08 56.4 5.7 37 85-121 55-96 (202)
162 1um8_A ATP-dependent CLP prote 97.1 0.00027 9.1E-09 64.2 4.1 32 84-115 72-103 (376)
163 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.00031 1.1E-08 62.7 4.2 31 84-114 45-76 (322)
164 1ixz_A ATP-dependent metallopr 97.1 0.00031 1E-08 60.1 4.0 29 86-114 51-79 (254)
165 3syl_A Protein CBBX; photosynt 97.1 0.00035 1.2E-08 61.3 4.4 27 82-108 65-91 (309)
166 2qp9_X Vacuolar protein sortin 97.1 0.00032 1.1E-08 63.5 4.2 31 85-115 85-115 (355)
167 1kjw_A Postsynaptic density pr 97.1 7.8E-05 2.7E-09 65.9 0.1 115 83-209 104-236 (295)
168 3d8b_A Fidgetin-like protein 1 97.1 0.00042 1.4E-08 62.7 4.5 32 83-114 116-147 (357)
169 2r62_A Cell division protease 97.0 0.00015 5.2E-09 62.4 1.5 30 85-114 45-74 (268)
170 3aez_A Pantothenate kinase; tr 97.0 0.00051 1.7E-08 61.2 4.6 28 81-108 87-114 (312)
171 1in4_A RUVB, holliday junction 97.0 0.00043 1.5E-08 62.0 4.1 28 85-112 52-79 (334)
172 2xkx_A Disks large homolog 4; 97.0 0.0013 4.4E-08 65.2 7.7 116 83-209 530-662 (721)
173 1z6g_A Guanylate kinase; struc 97.0 0.00036 1.2E-08 58.6 3.2 27 82-108 21-47 (218)
174 2kjq_A DNAA-related protein; s 97.0 0.00032 1.1E-08 55.5 2.6 26 83-108 35-60 (149)
175 1znw_A Guanylate kinase, GMP k 97.0 0.00049 1.7E-08 57.1 3.8 28 82-109 18-45 (207)
176 1iy2_A ATP-dependent metallopr 97.0 0.00051 1.7E-08 59.7 4.0 30 86-115 75-104 (278)
177 2c9o_A RUVB-like 1; hexameric 97.0 0.00054 1.8E-08 64.1 4.4 31 84-114 63-95 (456)
178 3vfd_A Spastin; ATPase, microt 96.9 0.00055 1.9E-08 62.5 4.3 32 84-115 148-179 (389)
179 1iqp_A RFCS; clamp loader, ext 96.9 0.0034 1.2E-07 55.0 9.3 26 83-108 45-70 (327)
180 1a5t_A Delta prime, HOLB; zinc 96.9 0.0067 2.3E-07 54.1 11.3 30 82-111 22-51 (334)
181 1svm_A Large T antigen; AAA+ f 96.9 0.001 3.4E-08 60.8 5.9 35 80-114 165-199 (377)
182 3bos_A Putative DNA replicatio 96.9 0.00056 1.9E-08 57.2 3.9 35 83-117 51-90 (242)
183 1sxj_A Activator 1 95 kDa subu 96.9 0.00061 2.1E-08 64.7 4.5 32 84-115 77-108 (516)
184 1l8q_A Chromosomal replication 96.9 0.00091 3.1E-08 59.3 5.4 37 84-120 37-78 (324)
185 3pfi_A Holliday junction ATP-d 96.9 0.00057 2E-08 60.8 4.0 32 84-115 55-86 (338)
186 1xjc_A MOBB protein homolog; s 96.9 0.00067 2.3E-08 55.0 3.9 25 84-108 4-28 (169)
187 2ce7_A Cell division protein F 96.9 0.00065 2.2E-08 64.0 4.3 31 85-115 50-80 (476)
188 1tue_A Replication protein E1; 96.9 0.00064 2.2E-08 56.8 3.7 32 83-114 57-88 (212)
189 3n70_A Transport activator; si 96.9 0.00048 1.7E-08 53.9 2.7 26 83-108 23-48 (145)
190 3cf2_A TER ATPase, transitiona 96.8 0.00058 2E-08 68.1 3.3 32 84-115 238-269 (806)
191 3pvs_A Replication-associated 96.8 0.0011 3.6E-08 62.0 4.9 34 82-115 48-81 (447)
192 2zan_A Vacuolar protein sortin 96.8 0.00083 2.9E-08 62.6 4.0 36 84-119 167-205 (444)
193 1njg_A DNA polymerase III subu 96.8 0.00093 3.2E-08 55.4 3.9 27 84-110 45-71 (250)
194 1htw_A HI0065; nucleotide-bind 96.7 0.0013 4.3E-08 52.6 4.3 27 82-108 31-57 (158)
195 1np6_A Molybdopterin-guanine d 96.7 0.0012 4.1E-08 53.6 4.1 25 84-108 6-30 (174)
196 3te6_A Regulatory protein SIR3 96.7 0.00098 3.3E-08 59.5 3.6 28 81-108 42-69 (318)
197 4a74_A DNA repair and recombin 96.7 0.00099 3.4E-08 55.5 3.5 27 82-108 23-49 (231)
198 3m6a_A ATP-dependent protease 96.7 0.0013 4.3E-08 63.0 4.6 31 83-113 107-137 (543)
199 2ehv_A Hypothetical protein PH 96.7 0.00094 3.2E-08 56.4 3.3 24 82-105 28-51 (251)
200 2qby_B CDC6 homolog 3, cell di 96.7 0.002 6.7E-08 58.1 5.6 27 82-108 43-69 (384)
201 3uk6_A RUVB-like 2; hexameric 96.7 0.0011 3.9E-08 59.5 3.9 27 84-110 70-96 (368)
202 1c9k_A COBU, adenosylcobinamid 96.7 0.00064 2.2E-08 55.6 2.1 28 87-115 2-31 (180)
203 1hqc_A RUVB; extended AAA-ATPa 96.6 0.001 3.6E-08 58.6 3.0 31 83-113 37-67 (324)
204 1rj9_A FTSY, signal recognitio 96.6 0.0016 5.3E-08 57.8 4.1 26 83-108 101-126 (304)
205 3hu3_A Transitional endoplasmi 96.6 0.0015 5.3E-08 61.6 4.3 34 82-115 236-269 (489)
206 2v1u_A Cell division control p 96.6 0.0011 3.8E-08 59.5 3.2 27 82-108 42-68 (387)
207 3e70_C DPA, signal recognition 96.5 0.0018 6.2E-08 58.0 4.5 28 81-108 126-153 (328)
208 2r44_A Uncharacterized protein 96.5 0.001 3.6E-08 59.0 2.9 29 85-113 47-75 (331)
209 2qby_A CDC6 homolog 1, cell di 96.5 0.0015 5.2E-08 58.5 4.0 27 82-108 43-69 (386)
210 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0016 5.4E-08 61.7 4.2 30 85-114 65-94 (499)
211 3co5_A Putative two-component 96.5 0.00043 1.5E-08 54.1 0.3 26 84-109 27-52 (143)
212 2eyu_A Twitching motility prot 96.5 0.0019 6.6E-08 55.8 4.4 28 81-108 22-49 (261)
213 2i3b_A HCR-ntpase, human cance 96.5 0.0014 4.7E-08 54.0 3.3 24 85-108 2-25 (189)
214 2v9p_A Replication protein E1; 96.5 0.0016 5.6E-08 57.7 4.0 32 78-109 120-151 (305)
215 2f1r_A Molybdopterin-guanine d 96.5 0.00077 2.6E-08 54.6 1.6 24 85-108 3-26 (171)
216 3u61_B DNA polymerase accessor 96.5 0.0013 4.5E-08 58.2 3.3 33 83-115 47-79 (324)
217 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0017 5.8E-08 54.0 3.8 27 82-108 21-47 (235)
218 1fnn_A CDC6P, cell division co 96.5 0.0019 6.6E-08 58.1 4.4 24 85-108 45-68 (389)
219 3pxg_A Negative regulator of g 96.5 0.0019 6.6E-08 60.5 4.5 27 82-108 199-225 (468)
220 1vma_A Cell division protein F 96.5 0.002 6.8E-08 57.1 4.4 27 82-108 102-128 (306)
221 4fcw_A Chaperone protein CLPB; 96.5 0.0021 7.3E-08 56.2 4.5 24 85-108 48-71 (311)
222 3tqf_A HPR(Ser) kinase; transf 96.5 0.0016 5.3E-08 53.0 3.3 34 83-118 15-48 (181)
223 3shw_A Tight junction protein 96.5 0.0012 4.1E-08 61.9 2.9 95 82-203 222-318 (468)
224 3tif_A Uncharacterized ABC tra 96.5 0.0014 5E-08 55.7 3.2 27 81-107 28-54 (235)
225 2cvh_A DNA repair and recombin 96.5 0.0018 6E-08 53.6 3.6 36 81-116 17-54 (220)
226 3b9q_A Chloroplast SRP recepto 96.5 0.0022 7.5E-08 56.7 4.4 27 82-108 98-124 (302)
227 2qgz_A Helicase loader, putati 96.4 0.0026 8.7E-08 56.4 4.7 38 84-121 152-195 (308)
228 3ihw_A Centg3; RAS, centaurin, 96.4 0.0022 7.5E-08 51.8 3.9 27 80-106 16-42 (184)
229 3oes_A GTPase rhebl1; small GT 96.4 0.0019 6.6E-08 52.7 3.5 29 79-107 19-47 (201)
230 2orw_A Thymidine kinase; TMTK, 96.4 0.0023 8E-08 52.2 3.9 25 84-108 3-27 (184)
231 2r2a_A Uncharacterized protein 96.4 0.0022 7.4E-08 53.3 3.7 25 83-107 4-28 (199)
232 2pcj_A ABC transporter, lipopr 96.4 0.0016 5.6E-08 54.9 3.0 26 82-107 28-53 (224)
233 2bjv_A PSP operon transcriptio 96.4 0.0016 5.4E-08 55.9 3.0 34 84-117 29-67 (265)
234 2z4s_A Chromosomal replication 96.4 0.0034 1.2E-07 58.4 5.4 36 84-119 130-172 (440)
235 1gwn_A RHO-related GTP-binding 96.4 0.0021 7.2E-08 53.1 3.5 39 69-107 13-51 (205)
236 1ypw_A Transitional endoplasmi 96.3 0.0019 6.6E-08 64.7 3.6 34 82-115 236-269 (806)
237 2cbz_A Multidrug resistance-as 96.3 0.002 6.7E-08 54.9 3.2 27 81-107 28-54 (237)
238 3cf2_A TER ATPase, transitiona 96.3 0.0025 8.6E-08 63.6 4.3 32 84-115 511-542 (806)
239 2onk_A Molybdate/tungstate ABC 96.3 0.0023 7.8E-08 54.7 3.4 23 85-107 25-47 (240)
240 1n0w_A DNA repair protein RAD5 96.3 0.0022 7.5E-08 53.9 3.2 26 82-107 22-47 (243)
241 1mv5_A LMRA, multidrug resista 96.3 0.0023 8E-08 54.6 3.4 27 81-107 25-51 (243)
242 1b0u_A Histidine permease; ABC 96.3 0.0021 7.3E-08 55.6 3.1 27 81-107 29-55 (262)
243 3gfo_A Cobalt import ATP-bindi 96.2 0.0021 7.1E-08 56.1 3.0 27 81-107 31-57 (275)
244 2og2_A Putative signal recogni 96.2 0.0034 1.2E-07 56.9 4.4 27 82-108 155-181 (359)
245 2qen_A Walker-type ATPase; unk 96.2 0.0032 1.1E-07 55.7 4.2 33 85-117 32-64 (350)
246 4g1u_C Hemin import ATP-bindin 96.2 0.0023 7.8E-08 55.6 3.1 27 81-107 34-60 (266)
247 2fn4_A P23, RAS-related protei 96.2 0.0032 1.1E-07 49.9 3.7 27 81-107 6-32 (181)
248 2px0_A Flagellar biosynthesis 96.2 0.0031 1E-07 55.6 3.9 26 83-108 104-129 (296)
249 2d2e_A SUFC protein; ABC-ATPas 96.2 0.0028 9.7E-08 54.4 3.6 25 82-106 27-51 (250)
250 2ff7_A Alpha-hemolysin translo 96.2 0.0024 8.1E-08 54.8 3.0 27 82-108 33-59 (247)
251 2olj_A Amino acid ABC transpor 96.2 0.0024 8.3E-08 55.3 3.1 28 81-108 47-74 (263)
252 2zu0_C Probable ATP-dependent 96.2 0.003 1E-07 54.8 3.7 27 81-107 43-69 (267)
253 2ixe_A Antigen peptide transpo 96.2 0.0025 8.7E-08 55.4 3.2 29 80-108 41-69 (271)
254 3tvt_A Disks large 1 tumor sup 96.2 0.0044 1.5E-07 54.5 4.7 114 84-208 100-231 (292)
255 1ji0_A ABC transporter; ATP bi 96.2 0.0025 8.6E-08 54.3 3.0 26 82-107 30-55 (240)
256 1sxj_D Activator 1 41 kDa subu 96.2 0.0029 9.9E-08 56.3 3.6 24 86-109 60-83 (353)
257 1lw7_A Transcriptional regulat 96.2 0.0027 9.4E-08 57.4 3.5 29 84-112 170-198 (365)
258 3pxi_A Negative regulator of g 96.2 0.0035 1.2E-07 62.2 4.5 36 82-117 199-244 (758)
259 1g6h_A High-affinity branched- 96.2 0.0025 8.5E-08 54.9 3.0 26 82-107 31-56 (257)
260 1sxj_C Activator 1 40 kDa subu 96.2 0.0029 9.8E-08 56.5 3.5 23 86-108 48-70 (340)
261 1cr0_A DNA primase/helicase; R 96.2 0.0035 1.2E-07 54.7 4.0 29 80-108 31-59 (296)
262 3b85_A Phosphate starvation-in 96.2 0.0022 7.4E-08 53.6 2.5 25 82-106 20-44 (208)
263 2ghi_A Transport protein; mult 96.2 0.0027 9.2E-08 54.9 3.2 28 81-108 43-70 (260)
264 2pze_A Cystic fibrosis transme 96.1 0.0027 9.2E-08 53.8 3.0 27 82-108 32-58 (229)
265 2a9k_A RAS-related protein RAL 96.1 0.0036 1.2E-07 49.8 3.6 25 82-106 16-40 (187)
266 1vpl_A ABC transporter, ATP-bi 96.1 0.0028 9.5E-08 54.7 3.1 27 81-107 38-64 (256)
267 3tsz_A Tight junction protein 96.1 0.0049 1.7E-07 56.5 4.9 100 82-208 230-330 (391)
268 2wji_A Ferrous iron transport 96.1 0.0036 1.2E-07 49.4 3.6 23 84-106 3-25 (165)
269 2yhs_A FTSY, cell division pro 96.1 0.004 1.4E-07 58.7 4.4 27 82-108 291-317 (503)
270 1jr3_A DNA polymerase III subu 96.1 0.0037 1.3E-07 56.0 4.0 27 84-110 38-64 (373)
271 1sgw_A Putative ABC transporte 96.1 0.0023 7.8E-08 53.7 2.4 26 82-107 33-58 (214)
272 2wjg_A FEOB, ferrous iron tran 96.1 0.004 1.4E-07 49.9 3.7 25 82-106 5-29 (188)
273 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0035 1.2E-07 56.8 3.6 25 82-106 28-52 (359)
274 2ce2_X GTPase HRAS; signaling 96.1 0.0043 1.5E-07 48.1 3.7 24 84-107 3-26 (166)
275 1g8p_A Magnesium-chelatase 38 96.1 0.0019 6.5E-08 57.4 1.8 24 86-109 47-70 (350)
276 2wsm_A Hydrogenase expression/ 96.1 0.0051 1.7E-07 50.9 4.3 27 82-108 28-54 (221)
277 2qi9_C Vitamin B12 import ATP- 96.0 0.0031 1.1E-07 54.2 3.0 26 82-107 24-49 (249)
278 2dr3_A UPF0273 protein PH0284; 96.0 0.004 1.4E-07 52.3 3.6 35 82-116 21-60 (247)
279 2yz2_A Putative ABC transporte 96.0 0.0033 1.1E-07 54.5 3.2 27 81-107 30-56 (266)
280 2ihy_A ABC transporter, ATP-bi 96.0 0.0031 1.1E-07 55.1 3.0 28 81-108 44-71 (279)
281 2dyk_A GTP-binding protein; GT 96.0 0.0048 1.6E-07 47.9 3.8 23 85-107 2-24 (161)
282 2qm8_A GTPase/ATPase; G protei 96.0 0.0068 2.3E-07 54.3 5.3 29 80-108 51-79 (337)
283 1kao_A RAP2A; GTP-binding prot 96.0 0.0046 1.6E-07 48.1 3.7 24 83-106 2-25 (167)
284 1sxj_E Activator 1 40 kDa subu 96.0 0.0032 1.1E-07 56.2 3.1 23 86-108 38-60 (354)
285 2oil_A CATX-8, RAS-related pro 96.0 0.0038 1.3E-07 50.4 3.3 25 82-106 23-47 (193)
286 2h57_A ADP-ribosylation factor 96.0 0.0033 1.1E-07 50.7 2.9 27 81-107 18-44 (190)
287 3kl4_A SRP54, signal recogniti 96.0 0.0046 1.6E-07 57.4 4.1 26 83-108 96-121 (433)
288 1oix_A RAS-related protein RAB 96.0 0.0038 1.3E-07 50.7 3.2 24 84-107 29-52 (191)
289 2ewv_A Twitching motility prot 96.0 0.0051 1.8E-07 55.9 4.3 27 82-108 134-160 (372)
290 3p32_A Probable GTPase RV1496/ 96.0 0.0072 2.4E-07 54.5 5.3 28 81-108 76-103 (355)
291 3rlf_A Maltose/maltodextrin im 96.0 0.0042 1.4E-07 56.7 3.7 26 82-107 27-52 (381)
292 2fv8_A H6, RHO-related GTP-bin 96.0 0.004 1.4E-07 51.1 3.2 25 82-106 23-47 (207)
293 2gno_A DNA polymerase III, gam 96.0 0.056 1.9E-06 47.6 10.9 26 83-108 17-42 (305)
294 3con_A GTPase NRAS; structural 96.0 0.0041 1.4E-07 50.0 3.2 26 82-107 19-44 (190)
295 2nq2_C Hypothetical ABC transp 95.9 0.0036 1.2E-07 53.9 3.0 26 82-107 29-54 (253)
296 2yyz_A Sugar ABC transporter, 95.9 0.0044 1.5E-07 56.1 3.7 26 82-107 27-52 (359)
297 3c5c_A RAS-like protein 12; GD 95.9 0.0049 1.7E-07 49.8 3.6 26 81-106 18-43 (187)
298 2f7s_A C25KG, RAS-related prot 95.9 0.0041 1.4E-07 51.2 3.2 25 82-106 23-47 (217)
299 2hf9_A Probable hydrogenase ni 95.9 0.0065 2.2E-07 50.4 4.5 27 82-108 36-62 (226)
300 2f9l_A RAB11B, member RAS onco 95.9 0.0052 1.8E-07 50.1 3.7 23 85-107 6-28 (199)
301 2it1_A 362AA long hypothetical 95.9 0.0046 1.6E-07 56.1 3.7 27 81-107 26-52 (362)
302 3dm5_A SRP54, signal recogniti 95.9 0.0055 1.9E-07 57.0 4.2 26 83-108 99-124 (443)
303 1ky3_A GTP-binding protein YPT 95.9 0.0052 1.8E-07 48.6 3.6 25 82-106 6-30 (182)
304 3sop_A Neuronal-specific septi 95.9 0.0054 1.8E-07 53.3 3.9 24 85-108 3-26 (270)
305 1nlf_A Regulatory protein REPA 95.9 0.0042 1.4E-07 53.9 3.1 25 83-107 29-53 (279)
306 1z47_A CYSA, putative ABC-tran 95.9 0.0047 1.6E-07 55.9 3.6 26 81-106 38-63 (355)
307 2www_A Methylmalonic aciduria 95.9 0.0062 2.1E-07 54.9 4.3 26 83-108 73-98 (349)
308 1v43_A Sugar-binding transport 95.9 0.0049 1.7E-07 56.1 3.7 27 81-107 34-60 (372)
309 1ypw_A Transitional endoplasmi 95.9 0.0022 7.5E-08 64.3 1.4 31 84-114 511-541 (806)
310 1z0f_A RAB14, member RAS oncog 95.9 0.0053 1.8E-07 48.5 3.4 26 82-107 13-38 (179)
311 1u8z_A RAS-related protein RAL 95.9 0.0061 2.1E-07 47.4 3.8 24 83-106 3-26 (168)
312 2h17_A ADP-ribosylation factor 95.8 0.0051 1.7E-07 49.2 3.3 26 81-106 18-43 (181)
313 3jvv_A Twitching mobility prot 95.8 0.0056 1.9E-07 55.4 3.9 25 84-108 123-147 (356)
314 1z2a_A RAS-related protein RAB 95.8 0.006 2E-07 47.6 3.6 24 83-106 4-27 (168)
315 2gco_A H9, RHO-related GTP-bin 95.8 0.0049 1.7E-07 50.3 3.2 24 83-106 24-47 (201)
316 1zu4_A FTSY; GTPase, signal re 95.8 0.0069 2.3E-07 54.0 4.4 27 82-108 103-129 (320)
317 1u0j_A DNA replication protein 95.8 0.007 2.4E-07 52.5 4.3 27 84-110 104-130 (267)
318 2b8t_A Thymidine kinase; deoxy 95.8 0.0075 2.6E-07 50.9 4.3 29 80-108 8-36 (223)
319 3lxx_A GTPase IMAP family memb 95.8 0.0054 1.8E-07 51.7 3.4 25 82-106 27-51 (239)
320 3tui_C Methionine import ATP-b 95.8 0.0055 1.9E-07 55.6 3.7 28 80-107 50-77 (366)
321 1c1y_A RAS-related protein RAP 95.8 0.0066 2.3E-07 47.3 3.8 24 83-106 2-25 (167)
322 2p5s_A RAS and EF-hand domain 95.8 0.0066 2.3E-07 49.4 3.9 26 81-106 25-50 (199)
323 2bbs_A Cystic fibrosis transme 95.8 0.0047 1.6E-07 54.3 3.1 27 81-107 61-87 (290)
324 1g29_1 MALK, maltose transport 95.8 0.0054 1.8E-07 55.8 3.6 25 82-106 27-51 (372)
325 2gf0_A GTP-binding protein DI- 95.8 0.0075 2.6E-07 48.7 4.1 26 81-106 5-30 (199)
326 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.005 1.7E-07 48.7 2.9 24 83-106 6-29 (177)
327 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.0056 1.9E-07 54.6 3.4 33 83-115 122-156 (331)
328 2chq_A Replication factor C sm 95.8 0.0057 2E-07 53.3 3.5 23 86-108 40-62 (319)
329 1pzn_A RAD51, DNA repair and r 95.7 0.0055 1.9E-07 55.2 3.5 28 81-108 128-155 (349)
330 3dz8_A RAS-related protein RAB 95.7 0.0032 1.1E-07 50.9 1.7 26 82-107 21-46 (191)
331 2pjz_A Hypothetical protein ST 95.7 0.0047 1.6E-07 53.5 2.8 24 84-107 30-53 (263)
332 3gd7_A Fusion complex of cysti 95.7 0.0059 2E-07 55.9 3.6 27 80-106 43-69 (390)
333 1r6b_X CLPA protein; AAA+, N-t 95.7 0.0063 2.2E-07 60.3 4.1 28 86-113 490-517 (758)
334 3llu_A RAS-related GTP-binding 95.7 0.0062 2.1E-07 49.5 3.3 26 81-106 17-42 (196)
335 3clv_A RAB5 protein, putative; 95.7 0.0084 2.9E-07 48.2 4.1 26 82-107 5-30 (208)
336 3d31_A Sulfate/molybdate ABC t 95.7 0.004 1.4E-07 56.2 2.3 26 81-106 23-48 (348)
337 2gza_A Type IV secretion syste 95.7 0.0039 1.3E-07 56.5 2.2 27 82-108 173-199 (361)
338 3nh6_A ATP-binding cassette SU 95.7 0.0034 1.2E-07 55.6 1.8 29 80-108 76-104 (306)
339 2gj8_A MNME, tRNA modification 95.7 0.0073 2.5E-07 48.1 3.6 24 84-107 4-27 (172)
340 3tw8_B RAS-related protein RAB 95.7 0.006 2E-07 48.2 3.0 25 82-106 7-31 (181)
341 2ged_A SR-beta, signal recogni 95.7 0.008 2.7E-07 48.4 3.9 26 82-107 46-71 (193)
342 2lkc_A Translation initiation 95.7 0.008 2.7E-07 47.5 3.8 25 82-106 6-30 (178)
343 1upt_A ARL1, ADP-ribosylation 95.6 0.0098 3.3E-07 46.5 4.2 25 82-106 5-29 (171)
344 3kkq_A RAS-related protein M-R 95.6 0.0086 2.9E-07 47.7 3.9 26 82-107 16-41 (183)
345 2nzj_A GTP-binding protein REM 95.6 0.0077 2.7E-07 47.3 3.6 23 84-106 4-26 (175)
346 3kfv_A Tight junction protein 95.6 0.051 1.7E-06 48.0 9.1 93 84-208 145-239 (308)
347 1sxj_B Activator 1 37 kDa subu 95.6 0.0071 2.4E-07 52.8 3.6 23 86-108 44-66 (323)
348 2npi_A Protein CLP1; CLP1-PCF1 95.6 0.0053 1.8E-07 57.5 2.9 28 81-108 135-162 (460)
349 2y8e_A RAB-protein 6, GH09086P 95.6 0.0068 2.3E-07 47.8 3.1 25 82-106 12-36 (179)
350 1pui_A ENGB, probable GTP-bind 95.6 0.0046 1.6E-07 50.6 2.2 25 81-105 23-47 (210)
351 1nrj_B SR-beta, signal recogni 95.6 0.0088 3E-07 49.3 3.9 26 82-107 10-35 (218)
352 3bwd_D RAC-like GTP-binding pr 95.6 0.0088 3E-07 47.4 3.8 26 81-106 5-30 (182)
353 1zd9_A ADP-ribosylation factor 95.6 0.0075 2.5E-07 48.6 3.3 25 82-106 20-44 (188)
354 2p67_A LAO/AO transport system 95.6 0.013 4.5E-07 52.5 5.3 29 80-108 52-80 (341)
355 1vg8_A RAS-related protein RAB 95.6 0.0082 2.8E-07 48.8 3.6 26 82-107 6-31 (207)
356 3hr8_A Protein RECA; alpha and 95.6 0.0084 2.9E-07 54.2 3.9 35 81-115 58-97 (356)
357 1yrb_A ATP(GTP)binding protein 95.5 0.011 3.7E-07 50.3 4.4 27 82-108 12-38 (262)
358 4bas_A ADP-ribosylation factor 95.5 0.0077 2.6E-07 48.6 3.3 27 80-106 13-39 (199)
359 2atv_A RERG, RAS-like estrogen 95.5 0.01 3.4E-07 48.1 4.0 27 81-107 25-51 (196)
360 1nij_A Hypothetical protein YJ 95.5 0.0066 2.3E-07 53.9 3.1 25 83-107 3-27 (318)
361 2zej_A Dardarin, leucine-rich 95.5 0.0066 2.3E-07 48.8 2.8 22 85-106 3-24 (184)
362 1qvr_A CLPB protein; coiled co 95.5 0.0068 2.3E-07 61.0 3.5 27 82-108 189-215 (854)
363 2a5j_A RAS-related protein RAB 95.5 0.0053 1.8E-07 49.6 2.2 24 83-106 20-43 (191)
364 2q3h_A RAS homolog gene family 95.5 0.0092 3.1E-07 48.4 3.7 26 81-106 17-42 (201)
365 3lxw_A GTPase IMAP family memb 95.5 0.0081 2.8E-07 51.2 3.5 26 81-106 18-43 (247)
366 2erx_A GTP-binding protein DI- 95.5 0.0089 3E-07 46.7 3.4 23 84-106 3-25 (172)
367 1oxx_K GLCV, glucose, ABC tran 95.5 0.0041 1.4E-07 56.2 1.6 25 82-106 29-53 (353)
368 3t5g_A GTP-binding protein RHE 95.5 0.0067 2.3E-07 48.2 2.8 24 83-106 5-28 (181)
369 1z06_A RAS-related protein RAB 95.5 0.0093 3.2E-07 47.9 3.6 25 82-106 18-42 (189)
370 1p9r_A General secretion pathw 95.5 0.011 3.9E-07 54.5 4.6 28 82-109 165-192 (418)
371 2hxs_A RAB-26, RAS-related pro 95.5 0.0098 3.3E-07 47.0 3.7 24 83-106 5-28 (178)
372 2qu8_A Putative nucleolar GTP- 95.5 0.0088 3E-07 49.9 3.5 25 82-106 27-51 (228)
373 3k53_A Ferrous iron transport 95.5 0.0096 3.3E-07 51.4 3.8 25 83-107 2-26 (271)
374 1fzq_A ADP-ribosylation factor 95.5 0.01 3.5E-07 47.5 3.8 26 82-107 14-39 (181)
375 1svi_A GTP-binding protein YSX 95.4 0.011 3.7E-07 47.6 3.9 25 82-106 21-45 (195)
376 2gf9_A RAS-related protein RAB 95.4 0.0073 2.5E-07 48.6 2.8 24 83-106 21-44 (189)
377 1g16_A RAS-related protein SEC 95.4 0.01 3.5E-07 46.3 3.5 23 84-106 3-25 (170)
378 3nbx_X ATPase RAVA; AAA+ ATPas 95.4 0.0047 1.6E-07 58.5 1.7 25 85-109 42-66 (500)
379 2ew1_A RAS-related protein RAB 95.4 0.0092 3.2E-07 49.0 3.3 25 82-106 24-48 (201)
380 3q85_A GTP-binding protein REM 95.4 0.011 3.6E-07 46.3 3.6 21 85-105 3-23 (169)
381 1z08_A RAS-related protein RAB 95.4 0.0096 3.3E-07 46.5 3.3 24 84-107 6-29 (170)
382 1ek0_A Protein (GTP-binding pr 95.4 0.0096 3.3E-07 46.4 3.2 23 84-106 3-25 (170)
383 4gzl_A RAS-related C3 botulinu 95.4 0.011 3.8E-07 48.3 3.8 26 81-106 27-52 (204)
384 4dsu_A GTPase KRAS, isoform 2B 95.4 0.0094 3.2E-07 47.5 3.2 24 84-107 4-27 (189)
385 1r2q_A RAS-related protein RAB 95.4 0.0081 2.8E-07 46.8 2.7 24 83-106 5-28 (170)
386 3pqc_A Probable GTP-binding pr 95.4 0.011 3.8E-07 47.3 3.7 25 83-107 22-46 (195)
387 3kta_A Chromosome segregation 95.4 0.011 3.9E-07 47.3 3.7 24 86-109 28-51 (182)
388 1m7b_A RND3/RHOE small GTP-bin 95.4 0.011 3.7E-07 47.4 3.5 26 82-107 5-30 (184)
389 2fna_A Conserved hypothetical 95.4 0.012 4.3E-07 51.8 4.3 32 85-116 31-64 (357)
390 2iwr_A Centaurin gamma 1; ANK 95.4 0.0086 3E-07 47.4 2.9 25 82-106 5-29 (178)
391 3q72_A GTP-binding protein RAD 95.3 0.01 3.5E-07 46.3 3.3 21 85-105 3-23 (166)
392 1mh1_A RAC1; GTP-binding, GTPa 95.3 0.01 3.4E-07 47.2 3.3 24 83-106 4-27 (186)
393 1moz_A ARL1, ADP-ribosylation 95.3 0.0087 3E-07 47.6 2.9 24 82-105 16-39 (183)
394 1ls1_A Signal recognition part 95.3 0.013 4.4E-07 51.5 4.3 26 83-108 97-122 (295)
395 3t1o_A Gliding protein MGLA; G 95.3 0.0075 2.6E-07 48.4 2.6 26 83-108 13-38 (198)
396 2bme_A RAB4A, RAS-related prot 95.3 0.0092 3.1E-07 47.6 3.1 24 83-106 9-32 (186)
397 2fh5_B SR-beta, signal recogni 95.3 0.011 3.7E-07 48.5 3.5 26 82-107 5-30 (214)
398 3pxi_A Negative regulator of g 95.3 0.013 4.5E-07 58.1 4.6 33 86-118 523-560 (758)
399 1z0j_A RAB-22, RAS-related pro 95.3 0.013 4.3E-07 45.8 3.7 24 84-107 6-29 (170)
400 2bov_A RAla, RAS-related prote 95.3 0.013 4.4E-07 47.5 3.9 26 82-107 12-37 (206)
401 3bc1_A RAS-related protein RAB 95.3 0.011 3.7E-07 47.2 3.4 24 83-106 10-33 (195)
402 3tkl_A RAS-related protein RAB 95.3 0.011 3.7E-07 47.6 3.3 24 83-106 15-38 (196)
403 2v3c_C SRP54, signal recogniti 95.2 0.008 2.7E-07 55.8 2.7 26 83-108 98-123 (432)
404 1xx6_A Thymidine kinase; NESG, 95.2 0.018 6E-07 47.4 4.5 27 82-108 6-32 (191)
405 2il1_A RAB12; G-protein, GDP, 95.2 0.01 3.5E-07 48.0 3.1 25 82-106 24-48 (192)
406 2j37_W Signal recognition part 95.2 0.013 4.6E-07 55.3 4.3 27 82-108 99-125 (504)
407 2zts_A Putative uncharacterize 95.2 0.012 4.2E-07 49.3 3.6 25 82-106 28-52 (251)
408 2fg5_A RAB-22B, RAS-related pr 95.2 0.011 3.6E-07 47.8 3.1 25 82-106 21-45 (192)
409 1w5s_A Origin recognition comp 95.2 0.011 3.8E-07 53.5 3.6 26 83-108 49-76 (412)
410 2hup_A RAS-related protein RAB 95.2 0.011 3.8E-07 48.3 3.2 25 82-106 27-51 (201)
411 3lda_A DNA repair protein RAD5 95.2 0.011 3.6E-07 54.4 3.4 25 82-106 176-200 (400)
412 2efe_B Small GTP-binding prote 95.2 0.012 4E-07 46.6 3.3 25 82-106 10-34 (181)
413 1r6b_X CLPA protein; AAA+, N-t 95.2 0.015 5.1E-07 57.7 4.6 27 82-108 205-231 (758)
414 2o52_A RAS-related protein RAB 95.2 0.011 3.7E-07 48.2 3.1 25 82-106 23-47 (200)
415 2zr9_A Protein RECA, recombina 95.2 0.012 4.1E-07 53.0 3.6 35 82-116 59-98 (349)
416 2pt7_A CAG-ALFA; ATPase, prote 95.2 0.007 2.4E-07 54.1 2.0 26 83-108 170-195 (330)
417 1m2o_B GTP-binding protein SAR 95.1 0.013 4.5E-07 47.4 3.4 24 83-106 22-45 (190)
418 1ksh_A ARF-like protein 2; sma 95.1 0.015 5.1E-07 46.4 3.7 25 82-106 16-40 (186)
419 2r8r_A Sensor protein; KDPD, P 95.1 0.02 6.9E-07 48.4 4.5 34 83-116 5-43 (228)
420 2g6b_A RAS-related protein RAB 95.1 0.014 4.7E-07 46.2 3.4 25 83-107 9-33 (180)
421 3cbq_A GTP-binding protein REM 95.1 0.011 3.7E-07 48.2 2.8 24 82-105 21-44 (195)
422 3reg_A RHO-like small GTPase; 95.1 0.013 4.4E-07 47.3 3.2 26 82-107 21-46 (194)
423 2rcn_A Probable GTPase ENGC; Y 95.1 0.013 4.3E-07 53.1 3.5 24 83-106 214-237 (358)
424 1zj6_A ADP-ribosylation factor 95.1 0.016 5.6E-07 46.4 3.8 25 82-106 14-38 (187)
425 1v5w_A DMC1, meiotic recombina 95.0 0.016 5.4E-07 52.0 4.0 27 81-107 119-145 (343)
426 3ozx_A RNAse L inhibitor; ATP 95.0 0.012 4.2E-07 56.1 3.5 28 80-107 21-48 (538)
427 1r8s_A ADP-ribosylation factor 95.0 0.017 5.7E-07 44.9 3.7 22 86-107 2-23 (164)
428 2b6h_A ADP-ribosylation factor 95.0 0.016 5.6E-07 46.9 3.7 24 82-105 27-50 (192)
429 1j8m_F SRP54, signal recogniti 95.0 0.013 4.4E-07 51.6 3.3 25 84-108 98-122 (297)
430 2yv5_A YJEQ protein; hydrolase 95.0 0.014 4.8E-07 51.4 3.6 23 83-105 164-186 (302)
431 1ojl_A Transcriptional regulat 95.0 0.014 4.8E-07 51.4 3.5 34 83-116 24-62 (304)
432 1tq4_A IIGP1, interferon-induc 95.0 0.015 5E-07 53.7 3.7 24 83-106 68-91 (413)
433 2cxx_A Probable GTP-binding pr 95.0 0.014 4.7E-07 46.6 3.2 22 85-106 2-23 (190)
434 1x3s_A RAS-related protein RAB 95.0 0.011 3.9E-07 47.3 2.7 25 83-107 14-38 (195)
435 1f6b_A SAR1; gtpases, N-termin 95.0 0.015 5.2E-07 47.3 3.5 25 82-106 23-47 (198)
436 3k1j_A LON protease, ATP-depen 95.0 0.011 3.8E-07 57.1 3.0 26 84-109 60-85 (604)
437 2j0v_A RAC-like GTP-binding pr 94.9 0.015 5.2E-07 47.6 3.3 25 82-106 7-31 (212)
438 2bcg_Y Protein YP2, GTP-bindin 94.9 0.015 5.2E-07 47.3 3.2 24 83-106 7-30 (206)
439 1knx_A Probable HPR(Ser) kinas 94.9 0.011 3.8E-07 52.4 2.5 34 83-118 146-179 (312)
440 2j1l_A RHO-related GTP-binding 94.9 0.017 5.7E-07 47.7 3.5 25 82-106 32-56 (214)
441 1qvr_A CLPB protein; coiled co 94.8 0.016 5.4E-07 58.4 3.8 24 85-108 589-612 (854)
442 2xtp_A GTPase IMAP family memb 94.8 0.019 6.4E-07 48.9 3.8 25 82-106 20-44 (260)
443 1u94_A RECA protein, recombina 94.8 0.017 5.9E-07 52.1 3.7 34 82-115 61-99 (356)
444 2oap_1 GSPE-2, type II secreti 94.8 0.011 3.8E-07 56.1 2.5 27 82-108 258-284 (511)
445 2qag_B Septin-6, protein NEDD5 94.8 0.018 6.2E-07 53.3 3.8 29 78-106 34-64 (427)
446 2z43_A DNA repair and recombin 94.8 0.017 5.8E-07 51.3 3.5 27 82-108 105-131 (324)
447 2xxa_A Signal recognition part 94.8 0.023 7.9E-07 52.7 4.5 27 82-108 98-124 (433)
448 3cph_A RAS-related protein SEC 94.7 0.022 7.7E-07 46.3 3.9 24 83-106 19-42 (213)
449 2ffh_A Protein (FFH); SRP54, s 94.7 0.023 7.8E-07 52.6 4.2 26 83-108 97-122 (425)
450 2i1q_A DNA repair and recombin 94.7 0.019 6.4E-07 50.8 3.5 26 82-107 96-121 (322)
451 2obl_A ESCN; ATPase, hydrolase 94.7 0.019 6.7E-07 51.6 3.6 31 79-109 66-96 (347)
452 1yqt_A RNAse L inhibitor; ATP- 94.7 0.018 6.3E-07 54.9 3.6 26 82-107 45-70 (538)
453 1u0l_A Probable GTPase ENGC; p 94.7 0.018 6.3E-07 50.6 3.3 23 84-106 169-191 (301)
454 1zbd_A Rabphilin-3A; G protein 94.7 0.022 7.5E-07 46.2 3.6 23 84-106 8-30 (203)
455 3b5x_A Lipid A export ATP-bind 94.6 0.018 6.2E-07 55.4 3.5 30 79-108 364-393 (582)
456 3bh0_A DNAB-like replicative h 94.6 0.025 8.5E-07 50.0 4.1 28 81-108 65-92 (315)
457 3iby_A Ferrous iron transport 94.6 0.019 6.5E-07 49.3 3.2 23 85-107 2-24 (256)
458 2dpy_A FLII, flagellum-specifi 94.6 0.021 7E-07 53.1 3.7 31 79-109 152-182 (438)
459 3q3j_B RHO-related GTP-binding 94.6 0.025 8.6E-07 46.7 3.9 25 82-106 25-49 (214)
460 1ko7_A HPR kinase/phosphatase; 94.6 0.028 9.6E-07 49.8 4.3 31 83-114 143-173 (314)
461 1zcb_A G alpha I/13; GTP-bindi 94.6 0.023 7.8E-07 51.5 3.8 28 81-108 30-57 (362)
462 3i8s_A Ferrous iron transport 94.6 0.025 8.4E-07 49.0 3.8 25 83-107 2-26 (274)
463 3b60_A Lipid A export ATP-bind 94.6 0.017 5.8E-07 55.6 3.0 29 80-108 365-393 (582)
464 3euj_A Chromosome partition pr 94.5 0.019 6.7E-07 53.9 3.4 24 85-108 30-53 (483)
465 3upu_A ATP-dependent DNA helic 94.5 0.024 8.1E-07 52.8 3.9 23 86-108 47-69 (459)
466 2g3y_A GTP-binding protein GEM 94.5 0.025 8.4E-07 47.0 3.6 24 83-106 36-59 (211)
467 3a1s_A Iron(II) transport prot 94.5 0.02 6.8E-07 49.2 3.0 24 83-106 4-27 (258)
468 3e1s_A Exodeoxyribonuclease V, 94.5 0.024 8.3E-07 54.5 4.0 26 83-108 203-228 (574)
469 2x77_A ADP-ribosylation factor 94.5 0.02 6.7E-07 45.9 2.8 24 82-105 20-43 (189)
470 1tf7_A KAIC; homohexamer, hexa 94.4 0.019 6.7E-07 54.4 3.1 25 80-104 35-59 (525)
471 3gj0_A GTP-binding nuclear pro 94.4 0.019 6.6E-07 47.4 2.8 28 82-109 13-41 (221)
472 3b1v_A Ferrous iron uptake tra 94.4 0.027 9.1E-07 48.9 3.7 23 84-106 3-25 (272)
473 2fu5_C RAS-related protein RAB 94.4 0.013 4.6E-07 46.5 1.6 23 84-106 8-30 (183)
474 2qnr_A Septin-2, protein NEDD5 94.4 0.023 8E-07 49.9 3.3 23 84-106 18-40 (301)
475 2cjw_A GTP-binding protein GEM 94.3 0.029 9.8E-07 45.5 3.6 24 84-107 6-29 (192)
476 2r6a_A DNAB helicase, replicat 94.3 0.031 1.1E-06 52.0 4.2 27 81-107 200-226 (454)
477 1ega_A Protein (GTP-binding pr 94.3 0.024 8E-07 49.9 3.2 24 83-106 7-30 (301)
478 3j16_B RLI1P; ribosome recycli 94.3 0.026 9E-07 54.6 3.7 26 82-107 101-126 (608)
479 3ozx_A RNAse L inhibitor; ATP 94.3 0.021 7.3E-07 54.4 3.0 26 82-107 292-317 (538)
480 4djt_A GTP-binding nuclear pro 94.2 0.011 3.9E-07 48.6 0.9 25 81-105 8-32 (218)
481 2atx_A Small GTP binding prote 94.2 0.033 1.1E-06 44.7 3.6 25 83-107 17-41 (194)
482 1wf3_A GTP-binding protein; GT 94.2 0.026 8.9E-07 49.6 3.2 25 82-106 5-29 (301)
483 1f2t_A RAD50 ABC-ATPase; DNA d 94.2 0.036 1.2E-06 43.4 3.7 24 84-107 23-46 (149)
484 1yqt_A RNAse L inhibitor; ATP- 94.2 0.027 9.3E-07 53.7 3.5 26 82-107 310-335 (538)
485 2yl4_A ATP-binding cassette SU 94.2 0.017 5.9E-07 55.7 2.2 29 80-108 366-394 (595)
486 4dcu_A GTP-binding protein ENG 94.1 0.025 8.7E-07 52.6 3.2 28 79-106 18-45 (456)
487 1tf7_A KAIC; homohexamer, hexa 94.0 0.029 1E-06 53.2 3.4 28 81-108 278-305 (525)
488 1t9h_A YLOQ, probable GTPase E 94.0 0.011 3.8E-07 52.3 0.5 24 83-106 172-195 (307)
489 3qf4_B Uncharacterized ABC tra 94.0 0.02 7E-07 55.2 2.3 29 80-108 377-405 (598)
490 3l0i_B RAS-related protein RAB 94.0 0.0046 1.6E-07 50.3 -2.0 23 83-105 32-54 (199)
491 3iev_A GTP-binding protein ERA 94.0 0.03 1E-06 49.3 3.2 26 81-106 7-32 (308)
492 4dhe_A Probable GTP-binding pr 94.0 0.018 6.1E-07 47.5 1.6 26 82-107 27-52 (223)
493 3io5_A Recombination and repai 93.9 0.037 1.2E-06 49.3 3.6 25 82-107 27-51 (333)
494 1xp8_A RECA protein, recombina 93.9 0.035 1.2E-06 50.3 3.6 35 82-116 72-111 (366)
495 3bk7_A ABC transporter ATP-bin 93.9 0.032 1.1E-06 54.0 3.5 26 82-107 380-405 (607)
496 3f9v_A Minichromosome maintena 93.9 0.012 4.2E-07 56.8 0.5 27 86-112 329-355 (595)
497 4a82_A Cystic fibrosis transme 93.9 0.018 6E-07 55.4 1.6 29 80-108 363-391 (578)
498 2j9r_A Thymidine kinase; TK1, 93.9 0.057 2E-06 45.1 4.5 27 82-108 26-52 (214)
499 1ni3_A YCHF GTPase, YCHF GTP-b 93.9 0.038 1.3E-06 50.6 3.7 25 82-106 18-42 (392)
500 3end_A Light-independent proto 93.8 0.059 2E-06 47.1 4.8 36 81-116 38-78 (307)
No 1
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=100.00 E-value=4.5e-38 Score=270.44 Aligned_cols=197 Identities=39% Similarity=0.724 Sum_probs=176.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
.+...|+|+|||||||+|+.|+++||++++++++++++.+..+++.|..+++++.+|.+++++.+..++.++|.+..+ .
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~-~ 86 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADC-A 86 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGG-T
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCccc-C
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999987655 4
Q ss_pred CeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----hhhcccCC
Q 023307 164 NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFD 239 (284)
Q Consensus 164 ~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~~l~~r~~ 239 (284)
+||||||||++..|++.|...+..++.||+|++|++++++|+.+|+.|+.+|+.||..|+||..+++| .++.+|.|
T Consensus 87 ~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g~~L~~R~D 166 (230)
T 3gmt_A 87 NGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDD 166 (230)
T ss_dssp TCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCGG
T ss_pred CCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCcccccCCcccccCCCCCccCcCCCccCccccCCC
Confidence 69999999999999999998888899999999999999999999999999999999999999887654 56788999
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHhhc-------------cceEEeccCcccceec
Q 023307 240 DTEEKVKLRLKTHHHNVEAVLSLYED-------------VTVEVCDMISLSFCFH 281 (284)
Q Consensus 240 ~~~~~i~~rl~~~~~~~~~~~~~y~~-------------~~i~ID~~~~~~~v~~ 281 (284)
|+++.+++||+.|++++.++++||++ .++.|||+++.++|+.
T Consensus 167 D~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~ 221 (230)
T 3gmt_A 167 DKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRA 221 (230)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC---------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHH
Confidence 99999999999999999999999985 5899999999988864
No 2
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=100.00 E-value=1e-37 Score=265.43 Aligned_cols=189 Identities=35% Similarity=0.711 Sum_probs=175.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
|+|+|.|||||||+|+|+.|+++||++||+++|++|+.+..+++.|..++.++..|.++|++++..++.+++.+ ..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~----~~ 76 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPK----HG 76 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCS----SS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhcc----CC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998865 46
Q ss_pred eEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCC
Q 023307 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~ 240 (284)
+||+||||++..|++.|.. .+..++.||+|++|++++++|+.+|+.++.+|+.||..|.||.. ..++.+|.||
T Consensus 77 ~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~---g~~l~~r~DD 153 (206)
T 3sr0_A 77 NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPP---GVKVIQREDD 153 (206)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCCT---TCCCBCCGGG
T ss_pred ceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCceeeeeccCCCC---CceecccCCC
Confidence 8999999999999998754 56789999999999999999999999999999999999999963 3467889999
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHhhcc--ceEEeccCccccee
Q 023307 241 TEEKVKLRLKTHHHNVEAVLSLYEDV--TVEVCDMISLSFCF 280 (284)
Q Consensus 241 ~~~~i~~rl~~~~~~~~~~~~~y~~~--~i~ID~~~~~~~v~ 280 (284)
+++.+++|++.|++++.++++||++. ++.|||+++.++|+
T Consensus 154 ~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~ 195 (206)
T 3sr0_A 154 KPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVY 195 (206)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 99999999999999999999999874 78999999987765
No 3
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=100.00 E-value=1.8e-35 Score=253.15 Aligned_cols=178 Identities=33% Similarity=0.556 Sum_probs=160.8
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCC
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~ 159 (284)
...++++|+|.|||||||+|+|+.|+++||+++|+++|++|+.+..+++.|..+++++..|.++|++.+..++.+++.+.
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~ 104 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKL 104 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Confidence 44677899999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred CCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCC
Q 023307 160 DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (284)
Q Consensus 160 ~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~ 239 (284)
.+..+|||+||||++..|++.|......++.||+|+++.+++.+|+..|.. +.+|.|
T Consensus 105 ~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~-----------------------~~~R~D 161 (217)
T 3umf_A 105 VDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAE-----------------------TSNRVD 161 (217)
T ss_dssp TTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-----------------------------CH
T ss_pred cccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccc-----------------------cCCCCC
Confidence 666789999999999999999999888999999999999999999999952 345778
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 240 ~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
|+++.+++|++.|++++.++++||++ .++.|||+++.++|+
T Consensus 162 D~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~ 204 (217)
T 3umf_A 162 DNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIF 204 (217)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 88999999999999999999999976 488999999987765
No 4
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=100.00 E-value=1.2e-32 Score=239.90 Aligned_cols=200 Identities=32% Similarity=0.546 Sum_probs=180.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
..++++|+|+|+|||||||+|+.|++++|++++++++++++....+++.+..+++++.+|.+++++.+..++.+.+....
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~ 105 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQ 105 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGG
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccc
Confidence 45778999999999999999999999999999999999999988999999999999999999999999999999887654
Q ss_pred CCCCeEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----h
Q 023307 161 SQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----A 232 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~ 232 (284)
+ +++||+||||++..|++.|.+ .+..++.+|+|++|++++++|+.+|+.|+.+|+.||..|+||..+..| .
T Consensus 106 ~-~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~ 184 (243)
T 3tlx_A 106 C-KKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184 (243)
T ss_dssp G-SSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred c-cCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCccccccc
Confidence 4 689999999999999888654 456789999999999999999999999999999999999999877654 4
Q ss_pred hhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccceec
Q 023307 233 RLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCFH 281 (284)
Q Consensus 233 ~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~~ 281 (284)
++.+|.+++++.+++|+..|++++.++.+||.+ .++.||++.+.++|..
T Consensus 185 ~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~ 235 (243)
T 3tlx_A 185 PLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEK 235 (243)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHH
Confidence 567788899999999999999999999999986 5889999988876653
No 5
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.98 E-value=1.8e-31 Score=228.32 Aligned_cols=198 Identities=39% Similarity=0.694 Sum_probs=172.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
.++++|+|+|+|||||||+|+.|++++|+.++++|+++++....+++.+..+++++..|..++++...+++..++.....
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 82 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVC 82 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 34578999999999999999999999999999999999998888889999999999999989999888888888776433
Q ss_pred CCCeEEEeCcccCHHHHHHHH----HcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----hh
Q 023307 162 QENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----AR 233 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~q~~~l~----~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~~ 233 (284)
+.+||+||||++..|++.+. ..+..++.+|||+++++++.+|+..|+.++.+|+.||..|.||..++.+ .+
T Consensus 83 -~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 161 (217)
T 3be4_A 83 -VNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTGEP 161 (217)
T ss_dssp -TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCB
T ss_pred -CCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccccc
Confidence 68999999999988887766 3566799999999999999999999999999999999999999887765 36
Q ss_pred hcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 234 LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 234 l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
+..+.++..+.+++|+..|++...+++++|++ .++.||++.+.++|.
T Consensus 162 l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~ 210 (217)
T 3be4_A 162 LVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVT 210 (217)
T ss_dssp CBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence 67777788999999999999999999999974 588999998877654
No 6
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.98 E-value=1.8e-31 Score=227.63 Aligned_cols=195 Identities=41% Similarity=0.716 Sum_probs=176.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
++|+|+|+|||||||+|+.|++++|+.++++|+++++.+..+++.+..+.+++..|..++++.+..++.+.+..... +.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~ 79 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDC-ER 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGG-TT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccc-cC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999888876544 68
Q ss_pred eEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----hhhcc
Q 023307 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTK 236 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~~l~~ 236 (284)
+||+||||++..+++.+.. .+..++.+|+|++|.+++.+|+.+|..|+.+|+.|+..+.||..+.+| .++..
T Consensus 80 ~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 159 (216)
T 3dl0_A 80 GFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQ 159 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTTCCBEEC
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCCCcCCccCCccccccCCCcccCccccccccccC
Confidence 9999999999988877665 456789999999999999999999999999999999999999887765 46677
Q ss_pred cCCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 237 r~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
|.+++++.+++|+..|++...++.++|.+ .++.||++.+.+++.
T Consensus 160 r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~ 205 (216)
T 3dl0_A 160 RADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVY 205 (216)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 88999999999999999999999999986 588999999886654
No 7
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.97 E-value=4.6e-31 Score=224.92 Aligned_cols=195 Identities=38% Similarity=0.702 Sum_probs=175.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
++|+|+|+|||||||+|+.|++++|+.++++|+++++.+..+++.+..+.+++..|..++++.+..++.+.+..... +.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~-~~ 79 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDC-QK 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGG-TT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccC-CC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999988876544 67
Q ss_pred eEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----hhhcc
Q 023307 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTK 236 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~~l~~ 236 (284)
+||+||+|+...+++.+.. .+..++.+|+|++|.+++.+|+.+|..|+.+|+.||..|.||..+.+| .++..
T Consensus 80 ~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~ 159 (216)
T 3fb4_A 80 GFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQ 159 (216)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEEC
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCcccc
Confidence 9999999999988877765 456689999999999999999999999999999999999999887765 45667
Q ss_pred cCCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 237 r~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
+.+++++.+++|+..|++...++.++|.+ .++.||++++.+++.
T Consensus 160 r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~ 205 (216)
T 3fb4_A 160 RIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVF 205 (216)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHH
Confidence 77889999999999999999999999986 488999999876654
No 8
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.97 E-value=5.1e-31 Score=224.85 Aligned_cols=195 Identities=42% Similarity=0.767 Sum_probs=174.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
++|+|+|+|||||||+|+.|++++|+.++++|+++++.+..+++.+..+++++..|..++++.+..++...+.+... +.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~-~~ 79 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDC-RN 79 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGG-GG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc-CC
Confidence 36999999999999999999999999999999999998888899999999999999999999988888888866432 46
Q ss_pred eEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----hhhcccCCC
Q 023307 165 GWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRFDD 240 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~~l~~r~~~ 240 (284)
+||+||||++..++..|...+..++.+|+|+++.+++++|+..|+.++.+|+.|+..+.||..++.+ .++..|.++
T Consensus 80 ~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~~r~dd 159 (214)
T 1e4v_A 80 GFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDD 159 (214)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBCCTTC
T ss_pred CEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccccCCCC
Confidence 8999999999999988888777899999999999999999999988899999999999999887654 566788889
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHhh-------ccceEEeccCccccee
Q 023307 241 TEEKVKLRLKTHHHNVEAVLSLYE-------DVTVEVCDMISLSFCF 280 (284)
Q Consensus 241 ~~~~i~~rl~~~~~~~~~~~~~y~-------~~~i~ID~~~~~~~v~ 280 (284)
..+.+.+|+..|++...+++++|+ ..++.|||+.+.++|.
T Consensus 160 ~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~ 206 (214)
T 1e4v_A 160 QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVR 206 (214)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHH
Confidence 999999999999999999999997 4689999998877664
No 9
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.97 E-value=5.1e-31 Score=225.96 Aligned_cols=199 Identities=75% Similarity=1.145 Sum_probs=177.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
.++++|+|+|+|||||||+++.|++++++.++++|++++.....++..|..+++++..|..++++.+...+.+.+.....
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDA 82 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhccc
Confidence 35578999999999999999999999999999999999998888888999999999999999988888777776654322
Q ss_pred CCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCC
Q 023307 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT 241 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~ 241 (284)
.+.+||+||+|++..+++.+...+..++++|||+++.+++.+|+..|..++.+|+.|+..+.||..+++++++..+.++.
T Consensus 83 ~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~ 162 (222)
T 1zak_A 83 QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDT 162 (222)
T ss_dssp HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCC
T ss_pred cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCC
Confidence 34689999999999888888877777899999999999999999999889999999999999999999888999888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 242 EEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 242 ~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
.+.+++|+..|+.+..++.++|+..++.||++.+.++|.
T Consensus 163 ~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~ 201 (222)
T 1zak_A 163 EEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVF 201 (222)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHH
Confidence 899999999999999999999988889999988876654
No 10
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.97 E-value=1.1e-29 Score=217.37 Aligned_cols=198 Identities=34% Similarity=0.646 Sum_probs=170.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
++++|+|+|+|||||||+|+.|++++++.++++|+++++....+++.+..+++++..|...+++.+..++.+.+......
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~ 82 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPAC 82 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhcccc
Confidence 45789999999999999999999999999999999999988888889999999999999999998888888877622223
Q ss_pred CCeEEEeCcccCHHHHHHHH----HcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----hhh
Q 023307 163 ENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARL 234 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~----~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~~l 234 (284)
+.+||+||||++..+++.+. ..+..++++|||+++.+++++|+..|..++.+|+.|+..|.||..+..+ .++
T Consensus 83 ~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~~~~l 162 (220)
T 1aky_A 83 KNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEAL 162 (220)
T ss_dssp GSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred CCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccccccc
Confidence 57899999999988776554 3466789999999999999999999998999999999999999876422 255
Q ss_pred cccCCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 235 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 235 ~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
..+.++..+.+.+|+..|.+...+++++|++ .++.||++.+.++|.
T Consensus 163 ~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~ 210 (220)
T 1aky_A 163 VQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVW 210 (220)
T ss_dssp BCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence 6677888999999999999999999999964 588999998876654
No 11
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.97 E-value=2.3e-29 Score=217.46 Aligned_cols=198 Identities=32% Similarity=0.639 Sum_probs=172.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
..+++|+|+|+|||||||+|+.|++++++.++++|+++++.+..++..+..+++++..|..++++....++..++.....
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~ 93 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPC 93 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccc
Confidence 45678999999999999999999999999999999999998888888999999999999999999988888888875433
Q ss_pred CCCeEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhh----h
Q 023307 162 QENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAA----R 233 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~----~ 233 (284)
+++||+||||++..+++.|.+ .+..++.+|||+++.+++.+|+..|..|+.+|+.|+..|.||..+++++ .
T Consensus 94 -~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~ 172 (233)
T 1ak2_A 94 -KNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEP 172 (233)
T ss_dssp -TTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTCCB
T ss_pred -cCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccccc
Confidence 578999999999988776543 3457899999999999999999999999999999999999998876643 3
Q ss_pred hcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 234 LTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 234 l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
+..+.++..+.+.+|+..|++...+++++|++ .++.||++.+.++|.
T Consensus 173 l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~ 221 (233)
T 1ak2_A 173 LIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVF 221 (233)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 45677888999999999999999999999974 588999998876654
No 12
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.96 E-value=1.6e-28 Score=211.16 Aligned_cols=195 Identities=35% Similarity=0.628 Sum_probs=166.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
..++++|+|+|+|||||||+|+.|++++|+.++++|++++.....+++.+..+++++..|..++++....++.+++.+.
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~- 82 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNL- 82 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTC-
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcc-
Confidence 3456799999999999999999999999999999999999988888888999999998898888888777777777653
Q ss_pred CCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----hhhcc
Q 023307 161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTK 236 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~~l~~ 236 (284)
.+.+||+|+++.+..+.+.+... ..++.+|||+++.+++.+|+..|..++.+|+.|+..+.||..++++ .++..
T Consensus 83 -~~~~~vid~~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~~~l~~ 160 (227)
T 1zd8_A 83 -TQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQ 160 (227)
T ss_dssp -TTSCEEEESCCCSHHHHHHHHTT-SCCCEEEEEECCHHHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTCCBCBC
T ss_pred -cCCCEEEeCCCCCHHHHHHHHHh-cCCCEEEEEECCHHHHHHHHHcCcCCCccCCccccccCCCCcccccccccccccC
Confidence 35789999999998887777654 3588999999999999999999988888899999999999887654 45666
Q ss_pred cCCCCHHHHHHHHHHHHHhHHHHHHHhh--ccceEEeccCcccce
Q 023307 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYE--DVTVEVCDMISLSFC 279 (284)
Q Consensus 237 r~~~~~~~i~~rl~~~~~~~~~~~~~y~--~~~i~ID~~~~~~~v 279 (284)
+.++..+.+++|+..|.+...++.++|+ +.++.||++ +.++|
T Consensus 161 r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v 204 (227)
T 1zd8_A 161 REDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKI 204 (227)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHH
Confidence 7777889999999999999999999997 458999998 55544
No 13
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.96 E-value=1.9e-29 Score=216.77 Aligned_cols=194 Identities=34% Similarity=0.598 Sum_probs=166.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
++|+|+|+|||||||+|+.|++++|++++++|+++++.+..+++.+..+++++..|..++++.+..++...+.... +.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~--g~ 78 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKG--KD 78 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHC--TT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhccc--CC
Confidence 4799999999999999999999999999999999999877778889999999999998898888888887775432 67
Q ss_pred eEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCC-CCceeeccCCCCCchH-Hh----hhh
Q 023307 165 GWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPV-TGKIYHVKYSPPETDE-IA----ARL 234 (284)
Q Consensus 165 g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~-~g~~~~~~~~~p~~~~-~~----~~l 234 (284)
+||+||||++..+++.+.. .+..++.+|||++|++++.+|+.+|+.++. +|+.||..|+||..++ +| .++
T Consensus 79 ~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~~~~~~l 158 (223)
T 2xb4_A 79 GWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCRVCGGAL 158 (223)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCTTTCCBE
T ss_pred eEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcccCCccccCCccccccCCCcccccccccccccc
Confidence 9999999999888877754 356799999999999999999999987777 9999999999997665 32 466
Q ss_pred cccCCCCHH-HHHHHHHHHHHhHHHHHH---Hhhc-------cceEEeccCccccee
Q 023307 235 TKRFDDTEE-KVKLRLKTHHHNVEAVLS---LYED-------VTVEVCDMISLSFCF 280 (284)
Q Consensus 235 ~~r~~~~~~-~i~~rl~~~~~~~~~~~~---~y~~-------~~i~ID~~~~~~~v~ 280 (284)
..+.+|+.+ .+++|+..|++.+.++.+ +|.+ .++.|||+.+.++|.
T Consensus 159 ~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~ 215 (223)
T 2xb4_A 159 SARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIK 215 (223)
T ss_dssp ECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHH
Confidence 677777778 999999999999988888 8865 478999999887664
No 14
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.93 E-value=2.2e-24 Score=180.19 Aligned_cols=175 Identities=38% Similarity=0.646 Sum_probs=145.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
.++++|+|+|+|||||||+|+.|++++|+++++.|++++.....++..+..+.+++..|..++++.....+...+.....
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccc
Confidence 35679999999999999999999999999999999999998877888888899988888888888777777777665554
Q ss_pred CCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCC
Q 023307 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDT 241 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~ 241 (284)
.+.++|+||+|+...+++.+......++.+|||++|.+++.+|+.+|+.. ..+.++.
T Consensus 87 ~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~-----------------------~~~~~~~ 143 (196)
T 2c95_A 87 TSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGET-----------------------SGRVDDN 143 (196)
T ss_dssp TCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTS-----------------------SSCGGGS
T ss_pred cCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCc-----------------------CCCCCCC
Confidence 57899999999999888877765567899999999999999999987421 1133445
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccce
Q 023307 242 EEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFC 279 (284)
Q Consensus 242 ~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v 279 (284)
.+.+.+|+..|.....+++++|+. .++.||++.+.+++
T Consensus 144 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v 183 (196)
T 2c95_A 144 EETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDSV 183 (196)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTCEEEEECCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHH
Confidence 778899999999999998888864 46789998776554
No 15
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.92 E-value=3e-24 Score=180.88 Aligned_cols=172 Identities=35% Similarity=0.631 Sum_probs=143.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
...+++|+|+|+|||||||+|+.|++++|++++++|+++++.+..++..+..+++++..|...+++.....+.+.+....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~ 96 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD 96 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc
Confidence 44567999999999999999999999999999999999999888888888899999988988888888888877776533
Q ss_pred CCCCeEEEeCcccCHHHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcc
Q 023307 161 SQENGWLLDGYPRSLSQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTK 236 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~ 236 (284)
.+.+||+||+|++..+.+.+.. .+..++.+|||++|.+++.+|+.+|+
T Consensus 97 -~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~--------------------------- 148 (201)
T 2cdn_A 97 -AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG--------------------------- 148 (201)
T ss_dssp -GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---------------------------
T ss_pred -CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC---------------------------
Confidence 3678999999999877765443 45568999999999999999999874
Q ss_pred cCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 237 RFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 237 r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
+.++..+.+++|+..|.....++.++|....+.||++.+.+++.
T Consensus 149 r~~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~~Id~~~~~eev~ 192 (201)
T 2cdn_A 149 RADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVF 192 (201)
T ss_dssp CTTCSHHHHHHHHHHHHHHTTTHHHHTTTTEEEEECCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHhcCcEEEEeCCCCHHHHH
Confidence 12345778889999999988888899977788999987765543
No 16
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.92 E-value=8.4e-24 Score=178.18 Aligned_cols=177 Identities=33% Similarity=0.585 Sum_probs=142.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHH-cCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~ 159 (284)
+.++++|+|+|++||||||+|+.|++++|+.++++|++++.... .+...+..+++++..|...+++.....+.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~ 91 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN 91 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence 34567999999999999999999999999999999999998754 57778888888888888888877777776655443
Q ss_pred CCCC-CeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccC
Q 023307 160 DSQE-NGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238 (284)
Q Consensus 160 ~~~~-~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~ 238 (284)
...+ .+||+||+|++.++...+......++++|||++|.+++.+|+.+|+. ...+.
T Consensus 92 l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~-----------------------~~~~~ 148 (203)
T 1ukz_A 92 VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGK-----------------------TSGRS 148 (203)
T ss_dssp HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHH-----------------------HHCCT
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccc-----------------------cCCCC
Confidence 3234 58999999999998887776655689999999999999999998741 11234
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 239 ~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
++..+.+.+|+..|.+...++.++|.. .++.||++.+.+++.
T Consensus 149 ~~~~e~~~~r~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~ 192 (203)
T 1ukz_A 149 DDNIESIKKRFNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVY 192 (203)
T ss_dssp TCSHHHHHHHHHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHH
Confidence 567888999999999998899888853 467899998876553
No 17
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.92 E-value=3.1e-23 Score=172.47 Aligned_cols=173 Identities=28% Similarity=0.539 Sum_probs=143.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
.+++|+|+|+|||||||+|+.|++.+|+.++++|++++.....+++.+..+.+++..|...+++.....+.+.+... .
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~--~ 82 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDAN--Q 82 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHTS--T
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHhc--C
Confidence 45799999999999999999999999999999999999888788889999999999998888888888888777654 4
Q ss_pred CCeEEEeCcccCHHHHHHHHHc---CCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCC
Q 023307 163 ENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFD 239 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~---~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~ 239 (284)
+.++|+||+|....+...+... +..++++|||++|.+++.+|+.+|+. ...+.+
T Consensus 83 ~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-----------------------~~~r~~ 139 (194)
T 1qf9_A 83 GKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE-----------------------SSGRSD 139 (194)
T ss_dssp TCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT-----------------------TSCCTT
T ss_pred CCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc-----------------------cCCCCC
Confidence 6789999999998877766432 23588999999999999999998842 112445
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 240 DTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 240 ~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
+..+.+.+|+..|.+...++.++|.. .++.||++.+.+++.
T Consensus 140 ~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~ 182 (194)
T 1qf9_A 140 DNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVY 182 (194)
T ss_dssp CSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHH
Confidence 66888999999999999998888854 358899987765543
No 18
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.91 E-value=2.2e-23 Score=174.50 Aligned_cols=174 Identities=33% Similarity=0.544 Sum_probs=141.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
.+++|+|+|+|||||||+|+.|++++|+.++++|++++.....+++.+..+.+++..|...+++.+...+.+.+......
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence 35789999999999999999999999999999999999887777888888889888888888888777777766554445
Q ss_pred CCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCCCH
Q 023307 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDDTE 242 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~ 242 (284)
+.+||+||+|....+...|......++++|||++|++++.+|+.+|+.. ..+.++..
T Consensus 91 ~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-----------------------~~~~~~~~ 147 (199)
T 2bwj_A 91 TRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRS-----------------------SLPVDDTT 147 (199)
T ss_dssp CSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCC-----------------------CSCHHHHH
T ss_pred CccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCC-----------------------CCCCCCCH
Confidence 7899999999998888777664346889999999999999999998531 01122345
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccce
Q 023307 243 EKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFC 279 (284)
Q Consensus 243 ~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v 279 (284)
+.+.+|+..|+....++.++|.. .++.||++.+.+++
T Consensus 148 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~~~e~v 186 (199)
T 2bwj_A 148 KTIAKRLEAYYRASIPVIAYYETKTQLHKINAEGTPEDV 186 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHH
Confidence 67889999999999998888864 35889988776554
No 19
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.90 E-value=7.6e-23 Score=169.72 Aligned_cols=169 Identities=34% Similarity=0.600 Sum_probs=138.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
++++|+|+|+|||||||+++.|++++|++++++|++++..+..+++.+..+.+++.+|...+++.....+.+.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~----- 77 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELA----- 77 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCC-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhc-----
Confidence 467899999999999999999999999999999999998877788888889999988988888877777766653
Q ss_pred CCeEEEeCcccCHHHHHHHH----HcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccC
Q 023307 163 ENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRF 238 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~----~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~ 238 (284)
.++|+||+++...+...+. ..+..++.+|||++|.+++.+|+..|.. ...+.
T Consensus 78 -~~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-----------------------~~~r~ 133 (186)
T 3cm0_A 78 -ERVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAE-----------------------LEGRS 133 (186)
T ss_dssp -SEEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHH-----------------------HHTCS
T ss_pred -CCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccc-----------------------cCCCC
Confidence 2499999999887765433 3344578999999999999999998730 01244
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHhhcc--ceEEeccCccccee
Q 023307 239 DDTEEKVKLRLKTHHHNVEAVLSLYEDV--TVEVCDMISLSFCF 280 (284)
Q Consensus 239 ~~~~~~i~~rl~~~~~~~~~~~~~y~~~--~i~ID~~~~~~~v~ 280 (284)
++..+.+.+|+..|.....++.++|++. ++.||++.+.+++.
T Consensus 134 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~ 177 (186)
T 3cm0_A 134 DDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVY 177 (186)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHH
Confidence 5678889999999999888988888754 78899987765543
No 20
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.90 E-value=1.1e-22 Score=169.34 Aligned_cols=175 Identities=30% Similarity=0.582 Sum_probs=136.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHc-CCcchHHHHHHHHcCCCcChHHHHHHHHHHhcC---
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ--- 158 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~--- 158 (284)
++++|+|+|+|||||||+|+.|++++|+++++.|++++..... ++..+..+++++..|...+++....++...+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhc
Confidence 4689999999999999999999999999999999999887654 556778888888888888777655555443322
Q ss_pred CCCCCCeEEEeCcccCHHHHHHHHHc---CCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhc
Q 023307 159 PDSQENGWLLDGYPRSLSQATALKKY---GFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLT 235 (284)
Q Consensus 159 ~~~~~~g~IlDg~p~~~~q~~~l~~~---~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~ 235 (284)
....+.+||+||+|....+.+.|... ...++.+|||++|++++++|+.+|.. ..
T Consensus 82 ~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~-----------------------~~ 138 (196)
T 1tev_A 82 ANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK-----------------------SS 138 (196)
T ss_dssp HCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH-----------------------TS
T ss_pred cccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc-----------------------cC
Confidence 12236789999999998876655431 23578999999999999999998741 12
Q ss_pred ccCCCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCccccee
Q 023307 236 KRFDDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFCF 280 (284)
Q Consensus 236 ~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v~ 280 (284)
.+.++..+.+.+++..|.+...++.++|.+ .++.||++.+.+++.
T Consensus 139 ~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~ 185 (196)
T 1tev_A 139 GRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVF 185 (196)
T ss_dssp SCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHH
Confidence 345566888899999999999999999975 356899998776553
No 21
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.87 E-value=7.8e-21 Score=165.10 Aligned_cols=193 Identities=36% Similarity=0.654 Sum_probs=154.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
++.+|+|+|++||||||+++.|++++|+..++.++++......+...+..+..++.++...++..+.+.+...+... .
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~--~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR--R 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC--T
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc--C
Confidence 46799999999999999999999999999999999988766555556667777777788888877777777666543 2
Q ss_pred CCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHh----hhhcccC
Q 023307 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIA----ARLTKRF 238 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~----~~l~~r~ 238 (284)
+.+|++||+++...+++.+... ..++++++|+++++++.+|+..|..+..+|+.+.+.+.+|..--++ +.+....
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~-~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld 182 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKI-CEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQE 182 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTT-CCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCG
T ss_pred CCeEEEECCCCCHHHHHHHHhh-cCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCC
Confidence 5689999999887766666543 3578999999999999999998877777787766646666544444 5666666
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHhhc--cceEEeccCcccce
Q 023307 239 DDTEEKVKLRLKTHHHNVEAVLSLYED--VTVEVCDMISLSFC 279 (284)
Q Consensus 239 ~~~~~~i~~rl~~~~~~~~~~~~~y~~--~~i~ID~~~~~~~v 279 (284)
++..+.+.+++..|.+...++.++|.+ .++.|||+.+ ++|
T Consensus 183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v 224 (246)
T 2bbw_A 183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKI 224 (246)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHH
Confidence 678889999999999999999999976 5889999988 444
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.77 E-value=2.7e-17 Score=133.80 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcC----CcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAG----SENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
++|+|+|+|||||||+|+.| +.+|+.++++++++++..... .........+... .++..+...+...+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~-- 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI---YGDGVVARLCVEELGT-- 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH---HCTTHHHHHHHHHHCS--
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh---CCHHHHHHHHHHHHHh--
Confidence 58999999999999999999 999999999999999876542 1222223332222 1133445556666643
Q ss_pred CCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhhcccCCC
Q 023307 161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARLTKRFDD 240 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~ 240 (284)
..+..+|+||+ ....+++.+......++.+|||++|.+++.+|+..|+.. ....
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~-------------------------~~~~ 129 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRS-------------------------DDSK 129 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC-----------------------------CC
T ss_pred cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCC-------------------------CCcc
Confidence 23688999999 888888888876657889999999999999999998520 1124
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCcccc
Q 023307 241 TEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSF 278 (284)
Q Consensus 241 ~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~ 278 (284)
+.+.+.+|+.... ......++....+.||++.+.++
T Consensus 130 ~~~~~~~r~~~~~--~~~~~~~~~~ad~vId~~~~~~~ 165 (179)
T 3lw7_A 130 EISELIRRDREEL--KLGIGEVIAMADYIITNDSNYEE 165 (179)
T ss_dssp CHHHHHHHHHHHH--HHTHHHHHHTCSEEEECCSCHHH
T ss_pred hHHHHHHHHHhhh--ccChHhHHHhCCEEEECCCCHHH
Confidence 4566666653321 11233444444667787765544
No 23
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.68 E-value=6.9e-16 Score=128.48 Aligned_cols=156 Identities=22% Similarity=0.285 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHH-------HHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV-------VTMVKE 154 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~l~~ 154 (284)
++|+|+|++||||||+++.|++.+ |+.++.+++ ..++..+..+++++..+...+.... ...+.+
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 74 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC------CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999 999887543 2244556666666665555443221 112233
Q ss_pred HhcCCCCCCCeEEEeCc----------ccC--HH---HHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceee
Q 023307 155 RLSQPDSQENGWLLDGY----------PRS--LS---QATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYH 219 (284)
Q Consensus 155 ~i~~~~~~~~g~IlDg~----------p~~--~~---q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~ 219 (284)
+......+..+|+|.| ++. .. ++..+......++.+|||++|++++.+|+.+|+.
T Consensus 75 -i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~--------- 144 (197)
T 2z0h_A 75 -IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNR--------- 144 (197)
T ss_dssp -HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CC---------
T ss_pred -HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCc---------
Confidence 5555555678888843 322 22 2223333455799999999999999999998831
Q ss_pred ccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCcccce
Q 023307 220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFC 279 (284)
Q Consensus 220 ~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v 279 (284)
.++ . .+.+++ ...+..+.+.++..++.||++.+.+++
T Consensus 145 ------------------~~~-~-~~~~~~---~~~~~~~~~~~~~~~~~Id~~~~~e~~ 181 (197)
T 2z0h_A 145 ------------------FEK-R-EFLERV---REGYLVLAREHPERIVVLDGKRSIEEI 181 (197)
T ss_dssp ------------------CCC-H-HHHHHH---HHHHHHHHHHCTTTEEEEETTSCHHHH
T ss_pred ------------------ccH-H-HHHHHH---HHHHHHHHHhCCCCEEEEeCCCCHHHH
Confidence 122 2 233333 344445556666678889998887554
No 24
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.66 E-value=2.2e-15 Score=124.90 Aligned_cols=118 Identities=24% Similarity=0.400 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH-------HHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV-------TMVKE 154 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~l~~ 154 (284)
++|+|+|++||||||+++.|++++ |++++++++. .+...+..+++++..|.+.++.... +.+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~------~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 74 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREP------GGTKVGEVLREILLTEELDERTELLLFEASRSKLIEE 74 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESS------CSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC------CCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999998 9999987631 2233455566666666554432211 11111
Q ss_pred HhcCCCCCCCeEEEe----------CcccCH--HHHHHHH---HcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 155 RLSQPDSQENGWLLD----------GYPRSL--SQATALK---KYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 155 ~i~~~~~~~~g~IlD----------g~p~~~--~q~~~l~---~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
.+......+..+|+| |+++.. .++..+. ..+..++.+|||++|++++.+|+.+|
T Consensus 75 ~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r 143 (195)
T 2pbr_A 75 KIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK 143 (195)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT
T ss_pred HHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc
Confidence 111111235678888 444432 2333322 33447999999999999999999865
No 25
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.66 E-value=1.7e-15 Score=130.39 Aligned_cols=167 Identities=19% Similarity=0.213 Sum_probs=104.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHH-HHHHH---
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVT-MVKER--- 155 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~--~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~l~~~--- 155 (284)
.++++|+|.|++||||||+++.|++.++ ..++.+. ...+++.+..+++++..+.........- ....+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~------~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR------EPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEC------TTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeec------CCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999986 4554331 1234566777777777665433222111 11111
Q ss_pred hcCC----CCCCCeEEEe----------CcccCHHH-----HHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCc
Q 023307 156 LSQP----DSQENGWLLD----------GYPRSLSQ-----ATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGK 216 (284)
Q Consensus 156 i~~~----~~~~~g~IlD----------g~p~~~~q-----~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~ 216 (284)
+.+. ...++.||+| |+++...+ +..+...+..||++|||++|++++.+|+.+|+..
T Consensus 98 ~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~----- 172 (229)
T 4eaq_A 98 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD----- 172 (229)
T ss_dssp CCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCC-----
Confidence 1111 1236789999 87765432 2234445668999999999999999999998520
Q ss_pred eeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 217 IYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 217 ~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
..+.++....+.+|+ ++.+..+.+.|+..+++||++.+.++|.
T Consensus 173 ------------------~dr~e~~~~~~~~rv---~~~y~~l~~~~~~~~~vIDa~~s~eev~ 215 (229)
T 4eaq_A 173 ------------------QNRLDQEDLKFHEKV---IEGYQEIIHNESQRFKSVNADQPLENVV 215 (229)
T ss_dssp --------------------CCCHHHHHHHHHH---HHHHHHHTTTCTTTEEEEETTSCHHHHH
T ss_pred ------------------ccchhhhhHHHHHHH---HHHHHHHHHhCCCCEEEEeCCCCHHHHH
Confidence 112222233444555 3444455566776789999999887654
No 26
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.66 E-value=1.1e-15 Score=129.24 Aligned_cols=165 Identities=18% Similarity=0.191 Sum_probs=100.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH--------HHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV--------TMVK 153 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~--~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~l~ 153 (284)
+++|+|.|+.||||||+++.|++.+ |..++-+.+ ..+++.+..+++++..+...+..... +.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~e------P~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~ 75 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE------PGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLV 75 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEES------STTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeC------CCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999988 454443211 22455566666666655443322111 1112
Q ss_pred HHhcCCCCCCCeEEEeCcc----------c--CHHHHHHHH---HcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCcee
Q 023307 154 ERLSQPDSQENGWLLDGYP----------R--SLSQATALK---KYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIY 218 (284)
Q Consensus 154 ~~i~~~~~~~~g~IlDg~p----------~--~~~q~~~l~---~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~ 218 (284)
+.+......+..||.|.|. + ..+.+..+. ..+..||++|||++|++++.+|+.+|+..
T Consensus 76 ~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~------- 148 (205)
T 4hlc_A 76 LKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRD------- 148 (205)
T ss_dssp HTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-----------
T ss_pred HHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCc-------
Confidence 2222222346778888632 1 233333333 34678999999999999999999988521
Q ss_pred eccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 219 HVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 219 ~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
..+.+... .+.++..++.|..+.+.+++.+++|||+.+.++|.
T Consensus 149 ----------------~dr~e~~~---~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~ 191 (205)
T 4hlc_A 149 ----------------QNRLDQED---LKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVV 191 (205)
T ss_dssp -------------------CCHHH---HHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHH
T ss_pred ----------------ccchhccC---HHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHH
Confidence 01111111 22333345666677777777899999999887664
No 27
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.65 E-value=2.1e-15 Score=124.90 Aligned_cols=116 Identities=18% Similarity=0.245 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHHH-cCCcchHHHHHHHHcCCCcCh--HHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIA-AGSENGKRAKEHMEKGQLVPD--EIVVTMVKERL 156 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir~~~~-~~~~~~~~~~~~~~~g~~~~~--~~~~~~l~~~i 156 (284)
++|+|+|+|||||||+++.|+++++ +.+++.++++.+.+. .+...+. . ..+.+.++ ..+...+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDR---D--EMRKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSH---H--HHTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccch---h--hhhcCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999997 889988898877652 2211110 0 00122222 22222222223
Q ss_pred cCCC--CCCCeEEEeCcccCHHH--------HHHHHHcCCCCcEEEEEEcCHHHHHHH-HHc
Q 023307 157 SQPD--SQENGWLLDGYPRSLSQ--------ATALKKYGFQPDLFILLEVPEDTLVER-VVG 207 (284)
Q Consensus 157 ~~~~--~~~~g~IlDg~p~~~~q--------~~~l~~~~~~~~~vI~L~~~~e~~~~R-l~~ 207 (284)
.... ..+..||+|+++....+ ...+... .++.+|||++|++++++| +..
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~l~~~~~~~~~rr~~~ 136 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI--NPSVIFLLEADPKIILSRQKRD 136 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHHC
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc--CCCEEEEEeCCHHHHHHHHHhh
Confidence 2222 23678999986432111 1222322 478999999999998866 766
No 28
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.5e-15 Score=127.38 Aligned_cols=153 Identities=13% Similarity=0.164 Sum_probs=93.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
..+.+|+|+|++||||||+++.|++.+|+.+++.|+++.... +......+.+. |...... ....+...+.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~--g~~i~~~~~~~---~~~~~~~-~e~~~l~~l~---- 92 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF--HKTVGELFTER---GEAGFRE-LERNMLHEVA---- 92 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHH-HHHHHHHHHT----
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh--CCcHHHHHHhc---ChHHHHH-HHHHHHHHHh----
Confidence 456799999999999999999999999999999999886642 22222222211 1100011 1111222222
Q ss_pred CCCeEEEe---CcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHH-cCCCCCCCCceeeccCCCCCchHHhhhhccc
Q 023307 162 QENGWLLD---GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV-GRRLDPVTGKIYHVKYSPPETDEIAARLTKR 237 (284)
Q Consensus 162 ~~~g~IlD---g~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~-~R~~~~~~g~~~~~~~~~p~~~~~~~~l~~r 237 (284)
....+|++ |.+......+.+.. ++.+|||++|.+++.+|+. .|...+ +.
T Consensus 93 ~~~~~vi~~ggg~~~~~~~~~~l~~----~~~vi~L~~~~e~l~~Rl~~~~~~Rp---------------------~~-- 145 (199)
T 3vaa_A 93 EFENVVISTGGGAPCFYDNMEFMNR----TGKTVFLNVHPDVLFRRLRIAKQQRP---------------------IL-- 145 (199)
T ss_dssp TCSSEEEECCTTGGGSTTHHHHHHH----HSEEEEEECCHHHHHHHHHHTGGGCG---------------------GG--
T ss_pred hcCCcEEECCCcEEccHHHHHHHHc----CCEEEEEECCHHHHHHHHhcCCCCCC---------------------Cc--
Confidence 24677887 44555555555553 6789999999999999998 442100 00
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccC
Q 023307 238 FDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMI 274 (284)
Q Consensus 238 ~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~ 274 (284)
.++..+.+.+++..+.+...++ |+...++||.+.
T Consensus 146 ~~~~~~~~~~~i~~~~~~r~~~---y~~ad~~Idt~~ 179 (199)
T 3vaa_A 146 QGKEDDELMDFIIQALEKRAPF---YTQAQYIFNADE 179 (199)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH---HTTSSEEEECCC
T ss_pred CCCChhhHHHHHHHHHHHHHHH---HhhCCEEEECCC
Confidence 1234556666776666655554 444556677654
No 29
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.63 E-value=2.3e-15 Score=128.10 Aligned_cols=166 Identities=14% Similarity=0.216 Sum_probs=104.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCC---CcChHHH-------
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ---LVPDEIV------- 148 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~---~~~~~~~------- 148 (284)
+++++|+|.|++||||||+++.|++.+ |+.++.+.+ ..+++.|..+++++..+. +.+....
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~------p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R 77 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTRE------PGGTPLAERIRELLLAPSDEPMAADTELLLMFAAR 77 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEES------SCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccC------CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999988 455544321 235666777777777653 2222211
Q ss_pred HHHHHHHhcCCCCCCCeEEEeCcc------------cCHHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCCCC
Q 023307 149 VTMVKERLSQPDSQENGWLLDGYP------------RSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPV 213 (284)
Q Consensus 149 ~~~l~~~i~~~~~~~~g~IlDg~p------------~~~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~ 213 (284)
.+.+.+.|......+..+|+|.|. ...+++..+.. .+..||++|||++|++++.+|+.+|+.
T Consensus 78 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~--- 154 (213)
T 4edh_A 78 AQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR--- 154 (213)
T ss_dssp HHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS---
T ss_pred HHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC---
Confidence 111112222222347788999631 12344444433 357899999999999999999998851
Q ss_pred CCceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 214 TGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 214 ~g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
..+.+.....+.+++ ++.+..+.+.|+..+++||++.+.++|.
T Consensus 155 ---------------------~dr~E~~~~~~~~rv---~~~y~~l~~~~~~~~~vIDa~~s~eeV~ 197 (213)
T 4edh_A 155 ---------------------LDRFEQEDRRFFEAV---RQTYLQRAAQAPERYQVLDAGLPLAEVQ 197 (213)
T ss_dssp ---------------------CCTTTTSCHHHHHHH---HHHHHHHHHHCTTTEEEEETTSCHHHHH
T ss_pred ---------------------cCcccccHHHHHHHH---HHHHHHHHHHCCCcEEEEeCCCCHHHHH
Confidence 011222112233333 4455566677777899999999987764
No 30
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.63 E-value=3.5e-16 Score=134.37 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=103.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-------CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHH---
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-------GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTM--- 151 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-------~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--- 151 (284)
.++++|+|.|++||||||+++.|++++ |+.++.+ ++ ..+++.|+.+++++..+.+.+.....-.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~llf~a~ 96 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT----RE--PGGTRLGETLREILLNQPMDLETEALLMFAG 96 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE----ES--SSSSHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee----cC--CCCChHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467899999999999999999999988 4444322 11 2356677788888877754443321111
Q ss_pred ----HHHHhcCCCCCCCeEEEeCccc------------CHHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCCC
Q 023307 152 ----VKERLSQPDSQENGWLLDGYPR------------SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDP 212 (284)
Q Consensus 152 ----l~~~i~~~~~~~~g~IlDg~p~------------~~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~ 212 (284)
+.+.|......+..||+|.|.. ..+++..+.. .+..||++|||++|++++.+|+.+|+.
T Consensus 97 R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-- 174 (227)
T 3v9p_A 97 RREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM-- 174 (227)
T ss_dssp HHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC--
T ss_pred HHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC--
Confidence 1112222223467889996421 2334444432 357899999999999999999998851
Q ss_pred CCCceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 213 VTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 213 ~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
..+.+... .+.++..++.|..+.+.|+..+++||++.+.++|.
T Consensus 175 ----------------------~dr~E~~~---~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~ 217 (227)
T 3v9p_A 175 ----------------------PDKFESES---DAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIR 217 (227)
T ss_dssp ----------------------C---CCHH---HHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHH
T ss_pred ----------------------ccchhhhh---HHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHH
Confidence 01112212 22333345566667777877899999999987764
No 31
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.62 E-value=1.1e-14 Score=119.21 Aligned_cols=152 Identities=17% Similarity=0.090 Sum_probs=89.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HhCCcEeehhHHHHHHHHcCCc-----chHHHHHHHHcCCCcChHHHHHHHHHHhc
Q 023307 84 PLKIMISGAPASGKGTQCELIKE-KYGLVHIAAGDLLRAEIAAGSE-----NGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~-~~~~~~is~ddlir~~~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~l~~~i~ 157 (284)
+++|+|.|+|||||||+|+.|++ .+++.+++.|. ++..+..... +...-... ..+.+...+...+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YRQSIMAHEERDEYKYTKKKEGI-------VTGMQFDTAKSILY 73 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HHHHHTTSCCGGGCCCCHHHHHH-------HHHHHHHHHHHHHT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HHHHhhCCCccchhhhchhhhhH-------HHHHHHHHHHHHHh
Confidence 46899999999999999999999 68999999755 4443332111 11110000 11223344455553
Q ss_pred CCCCCCCeEEEeCcccCHHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHHhhhh
Q 023307 158 QPDSQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEIAARL 234 (284)
Q Consensus 158 ~~~~~~~g~IlDg~p~~~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~l 234 (284)
.. ..+.++|+|+++....+.+.+.. ....+..+|||+++.+++++|+..|..
T Consensus 74 ~~-~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~------------------------ 128 (181)
T 1ly1_A 74 GG-DSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT------------------------ 128 (181)
T ss_dssp SC-SSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG------------------------
T ss_pred hc-cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc------------------------
Confidence 21 34789999998877666554443 112345799999999999999999852
Q ss_pred cccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCcccc
Q 023307 235 TKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSF 278 (284)
Q Consensus 235 ~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~ 278 (284)
.....+.+.++++.|.... .++ .+.||+..+.++
T Consensus 129 ---~~~~~~~i~~~~~~~~~~~-----~~~--~~~id~~~~~~v 162 (181)
T 1ly1_A 129 ---KAVPIDVLRSMYKSMREYL-----GLP--VYNGTPGKPKAV 162 (181)
T ss_dssp ---GCCCHHHHHHHHHHHHHHH-----TCC--CC----------
T ss_pred ---CCCCHHHHHHHHHHhhccC-----CCC--ccccCCCCCcee
Confidence 0234667777777766541 222 233777665433
No 32
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.59 E-value=6.5e-15 Score=123.59 Aligned_cols=113 Identities=25% Similarity=0.277 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHH---HHHHHHHHhcCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI---VVTMVKERLSQPD 160 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~l~~~i~~~~ 160 (284)
+++|+|+|++||||||+++.|++.+|+.+++.|++...... .....|....+.. ....+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~l~~~~---- 83 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENI----------RKMSEGIPLTDDDRWPWLAAIGERL---- 83 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHH----------HHHHHTCCCCHHHHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhH----------HHHhcCCCCCchhhHHHHHHHHHHH----
Confidence 56899999999999999999999999999998887532110 1122233222221 222333333
Q ss_pred CCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
..+.++|+|+........+.+......++.+|||+++.+++.+|+.+|..
T Consensus 84 ~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 84 ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTG 133 (202)
T ss_dssp TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHS
T ss_pred hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhc
Confidence 33678999987666667677776655567999999999999999998853
No 33
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.58 E-value=9.3e-15 Score=124.33 Aligned_cols=165 Identities=17% Similarity=0.196 Sum_probs=98.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CC-cEeehhHHHHHHHHcCCcchHHHHHHHHcC-----CCcCh-HHH----
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY---GL-VHIAAGDLLRAEIAAGSENGKRAKEHMEKG-----QLVPD-EIV---- 148 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~---~~-~~is~ddlir~~~~~~~~~~~~~~~~~~~g-----~~~~~-~~~---- 148 (284)
++++|+|.|++||||||+++.|++.+ |+ .++-+ ++ ..+++.|+.+++++... ..+.. ...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~----re--p~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~ 75 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT----RE--PGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFY 75 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE----ES--SCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee----eC--CCCCHHHHHHHHHHhcccccccccCChHHHHHHHH
Confidence 46799999999999999999999987 44 22211 11 23566777777777622 12221 110
Q ss_pred ---HHHHHHHhcCCCCCCCeEEEeCcc----------c--CHHHHHHH---HHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 149 ---VTMVKERLSQPDSQENGWLLDGYP----------R--SLSQATAL---KKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 149 ---~~~l~~~i~~~~~~~~g~IlDg~p----------~--~~~q~~~l---~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
.+.+.+.|......+..||.|.|. + ..+++..+ ...+..||++|||++|++++++|+.+|+.
T Consensus 76 A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~ 155 (213)
T 4tmk_A 76 AARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGE 155 (213)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 111122232223347889999532 1 13344333 33467899999999999999999998852
Q ss_pred CCCCCceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCcccceec
Q 023307 211 DPVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCFH 281 (284)
Q Consensus 211 ~~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~~ 281 (284)
..+.+.....+.+++ ++.|..+.+.+ ..+++||++.+.++|..
T Consensus 156 ------------------------~dr~E~~~~~f~~rv---~~~y~~la~~~-~~~~vIDa~~s~eeV~~ 198 (213)
T 4tmk_A 156 ------------------------LDRIEQESFDFFNRT---RARYLELAAQD-KSIHTIDATQPLEAVMD 198 (213)
T ss_dssp ------------------------CCTTTTSCHHHHHHH---HHHHHHHHHTC-TTEEEEETTSCHHHHHH
T ss_pred ------------------------ccchhhhHHHHHHHH---HHHHHHHHHHC-CcEEEECCCCCHHHHHH
Confidence 011221112223333 33344444444 56899999999877653
No 34
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.58 E-value=1.3e-14 Score=119.85 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=68.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
+++|+|+|++||||||+++.|++++|+.+++.|+++.... +.+....+... |...........+.. +.. ..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~--g~~~~~~~~~~---g~~~~~~~~~~~~~~-~~~---~~ 75 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT--GADIAWIFEME---GEAGFRRREREMIEA-LCK---LD 75 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHHHHHHHHHH-HHH---SS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc--CCChhhHHHHh---CHHHHHHHHHHHHHH-HHh---cC
Confidence 4689999999999999999999999999999999887643 22222221111 110001111122222 221 12
Q ss_pred CeEEEeC--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHH
Q 023307 164 NGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206 (284)
Q Consensus 164 ~g~IlDg--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 206 (284)
..+|..| ........+.+... ..+|||++|.+++.+|+.
T Consensus 76 ~~vi~~gg~~~~~~~~~~~l~~~----~~vi~L~~~~e~l~~Rl~ 116 (185)
T 3trf_A 76 NIILATGGGVVLDEKNRQQISET----GVVIYLTASIDTQLKRIG 116 (185)
T ss_dssp SCEEECCTTGGGSHHHHHHHHHH----EEEEEEECCHHHHHHHHH
T ss_pred CcEEecCCceecCHHHHHHHHhC----CcEEEEECCHHHHHHHHh
Confidence 3344444 33444445555543 389999999999999994
No 35
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.57 E-value=1.2e-15 Score=131.82 Aligned_cols=170 Identities=18% Similarity=0.194 Sum_probs=96.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcC---CCcCh-HHH-------H
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG---QLVPD-EIV-------V 149 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g---~~~~~-~~~-------~ 149 (284)
.+++++|+|.|++||||||+++.|++.++...++...+.++ ..+++.++.+++++..+ ..+.. ... .
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~re--p~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~ 101 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTRE--PGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARV 101 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecC--CCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999883322211111122 24566777787777522 11221 111 1
Q ss_pred HHHHHHhcCCCCCCCeEEEeCcc----------c--CHHHHHHHH---HcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCC
Q 023307 150 TMVKERLSQPDSQENGWLLDGYP----------R--SLSQATALK---KYGFQPDLFILLEVPEDTLVERVVGRRLDPVT 214 (284)
Q Consensus 150 ~~l~~~i~~~~~~~~g~IlDg~p----------~--~~~q~~~l~---~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~ 214 (284)
+.+.+.|......+..+|+|.|. + ..+.+..+. ..+..||++|||++|++++++|+.+|+.
T Consensus 102 ~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~---- 177 (236)
T 3lv8_A 102 QLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGE---- 177 (236)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----C----
T ss_pred HHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC----
Confidence 11122232222347889999531 1 123333333 3457899999999999999999998852
Q ss_pred CceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCccccee
Q 023307 215 GKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCF 280 (284)
Q Consensus 215 g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~ 280 (284)
..+.+.....+.+++ ++.+..+.+.++. +++||++.+.++|.
T Consensus 178 --------------------~dr~E~~~~~~~~rv---~~~y~~la~~~~~-~~vIDa~~sieeV~ 219 (236)
T 3lv8_A 178 --------------------LDRIEKMDISFFERA---RERYLELANSDDS-VVMIDAAQSIEQVT 219 (236)
T ss_dssp --------------------CCTTTTSCHHHHHHH---HHHHHHHHHHCTT-EEEEETTSCHHHHH
T ss_pred --------------------cchhhhhHHHHHHHH---HHHHHHHHHHCCC-EEEEeCCCCHHHHH
Confidence 011121112333333 4445556666666 89999999987764
No 36
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.57 E-value=1.9e-14 Score=117.00 Aligned_cols=139 Identities=12% Similarity=0.009 Sum_probs=88.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
++|+|+|+|||||||+++.|++.+++.+++.|.+..... .....+ .. ...+.. +.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--------~~~~~~------------~~-~~~l~~----~~ 56 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--------GNEKLF------------EH-FNKLAD----ED 56 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--------CHHHHH------------HH-HHHHTT----CC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--------HHHHHH------------HH-HHHHHh----CC
Confidence 589999999999999999999999999999887765421 000111 11 112221 45
Q ss_pred eEEEeCcc---------------cCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchH
Q 023307 165 GWLLDGYP---------------RSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDE 229 (284)
Q Consensus 165 g~IlDg~p---------------~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~ 229 (284)
.+|.|.+. ....+...+......++.+|||+++.+++.+|+.+|+.
T Consensus 57 ~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r------------------- 117 (173)
T 3kb2_A 57 NVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD------------------- 117 (173)
T ss_dssp SEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSC-------------------
T ss_pred CeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC-------------------
Confidence 56666321 12233444444445689999999999999999998741
Q ss_pred HhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccC-cccce
Q 023307 230 IAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMI-SLSFC 279 (284)
Q Consensus 230 ~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~-~~~~v 279 (284)
.....+ .++...+.+......|+...++||++. +.+++
T Consensus 118 --------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ev 156 (173)
T 3kb2_A 118 --------EYIEGK----DIDSILELYREVMSNAGLHTYSWDTGQWSSDEI 156 (173)
T ss_dssp --------SCCCHH----HHHHHHHHHHHHHHTCSSCEEEEETTTSCHHHH
T ss_pred --------cchhhh----HHHHHHHHHHHHHhhcCCCEEEEECCCCCHHHH
Confidence 011121 223334455566677776788899873 55443
No 37
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.57 E-value=3.3e-14 Score=117.77 Aligned_cols=113 Identities=17% Similarity=0.374 Sum_probs=74.4
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHH-hCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCc---ChHHHHHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEK-YGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLV---PDEIVVTMVKER 155 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~-~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~ 155 (284)
..+++++|+|+|+|||||||+++.|++. +|++++++|+++++.. ....+.+.+... .+ .++.+.+.+...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~-----~~~~~~~~~~~~-~~~r~~~~~~~~~l~~~ 79 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH-----FYTEYDTELDTH-IIEEKDEDRLLDFMEPI 79 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT-----CSCC------CC-CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh-----hhhhHHHHhhhc-ccCCCCHHHHHHHHHHH
Confidence 3445679999999999999999999999 7999999999988731 111111111111 12 233334444444
Q ss_pred hcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 156 LSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 156 i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+.. ++++|+|+..... +... .++.+|||+++.+++.+|+.+|+
T Consensus 80 ~~~----~g~~vi~~~~~~~-----~~~~--~~~~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 80 MVS----RGNHVVDYHSSEL-----FPER--WFHMVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp HTS----SSEEEEECSCCTT-----SCGG--GCSEEEEEECCHHHHHHHHHHTT
T ss_pred Hhc----cCCEEEeCchHhh-----hhhc--cCCEEEEEECCHHHHHHHHHhCC
Confidence 422 3578888743211 1111 26789999999999999999985
No 38
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.57 E-value=3.5e-14 Score=119.31 Aligned_cols=159 Identities=20% Similarity=0.260 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH------HHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV------TMVKER 155 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~l~~~ 155 (284)
++|+|.|+.||||||+++.|++.+ |..++-+.+ ..++..+..+++++......+..... ......
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre------P~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~ 74 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE------PGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTE 74 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES------SCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC------CCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999887 565553211 12344455555554444333322110 111222
Q ss_pred hcCCCCCCCeEEEeCcc------------cCHHHHHH---HHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeec
Q 023307 156 LSQPDSQENGWLLDGYP------------RSLSQATA---LKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHV 220 (284)
Q Consensus 156 i~~~~~~~~g~IlDg~p------------~~~~q~~~---l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~ 220 (284)
|......+..||.|.|. ...+.+.. +...+..||++|||++|++++.+|...|.
T Consensus 75 I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d----------- 143 (197)
T 3hjn_A 75 IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN----------- 143 (197)
T ss_dssp HHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C-----------
T ss_pred HHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC-----------
Confidence 33333347788889642 11222333 33456789999999999999999965442
Q ss_pred cCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCcccceec
Q 023307 221 KYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFCFH 281 (284)
Q Consensus 221 ~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v~~ 281 (284)
+.++ . +.++..++.|..+.+.+++.+++|||+.+.++|+.
T Consensus 144 ----------------r~e~-~----ef~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~ 183 (197)
T 3hjn_A 144 ----------------RFEK-R----EFLERVREGYLVLAREHPERIVVLDGKRSIEEIHR 183 (197)
T ss_dssp ----------------TTCC-H----HHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHH
T ss_pred ----------------cccc-H----HHHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHH
Confidence 1222 2 23333456666777888888999999999877653
No 39
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.57 E-value=1.5e-14 Score=119.50 Aligned_cols=117 Identities=15% Similarity=0.266 Sum_probs=71.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcC--hHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVP--DEIVVTMVKERL 156 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~l~~~i 156 (284)
+++|+|+|+|||||||+++.|+++++ +.++++++++++......... ...+. ..... ...+...+.+.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~i 78 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVS-DRDQM---RKMDPETQKRIQKMAGRKI 78 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCS-SGGGG---SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCC-CHHHH---hcCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998 999999999887654211100 00000 11111 111112222223
Q ss_pred cCCCCCCCeEEEeCcccCH--HHH------HHHHHcCCCCcEEEEEEcCHHHHHH-HHHc
Q 023307 157 SQPDSQENGWLLDGYPRSL--SQA------TALKKYGFQPDLFILLEVPEDTLVE-RVVG 207 (284)
Q Consensus 157 ~~~~~~~~g~IlDg~p~~~--~q~------~~l~~~~~~~~~vI~L~~~~e~~~~-Rl~~ 207 (284)
.... .+..||+||++... ... ..+... .++++|||++|.+++.+ |+..
T Consensus 79 ~~~~-~~~~viid~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~~~~~rRl~~ 135 (192)
T 1kht_A 79 AEMA-KESPVAVDTHSTVSTPKGYLPGLPSWVLNEL--NPDLIIVVETTGDEILMRRMSD 135 (192)
T ss_dssp HHHH-TTSCEEEECCSEEEETTEEEESSCHHHHHHH--CCSEEEEEECCHHHHHHHHHTS
T ss_pred Hhhc-cCCeEEEccceeccccccccccCcHHHHhcc--CCCEEEEEeCCHHHHHHHHhhh
Confidence 2211 24689999864310 000 112222 37889999999999996 8977
No 40
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.56 E-value=1.8e-14 Score=119.36 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
.++++|+|+|+|||||||+++.|++++|+.+++.|++...........+......+... ....+...+...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~---- 75 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGAT---AIMMLYHTAATILQ---- 75 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHH---HHHHHHHHHHHHHH----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHH---HHHHHHHHHHHHHh----
Confidence 35689999999999999999999999999999987765443321000011000000000 00111122222332
Q ss_pred CCCeEEEeCcccCHH---HHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 162 QENGWLLDGYPRSLS---QATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~---q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+.++|+|++..... ++..+...+..++++|||++|.+++.+|+..|+
T Consensus 76 ~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~ 126 (193)
T 2rhm_A 76 SGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRI 126 (193)
T ss_dssp TTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhc
Confidence 367899999763222 222345555578899999999999999998874
No 41
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.56 E-value=9.2e-14 Score=113.20 Aligned_cols=109 Identities=12% Similarity=0.117 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQEN 164 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~~ 164 (284)
++|+|+|++||||||+|+.|++.+|+++++.|++++.. .+......+.. .+...... +...+...+. ..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~--~g~~~~~~~~~---~~~~~~~~-~~~~~~~~l~-----~~ 71 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT--SGMTVADVVAA---EGWPGFRR-RESEALQAVA-----TP 71 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH--HCSCHHHHHHH---HHHHHHHH-HHHHHHHHHC-----CS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH--hCCCHHHHHHH---cCHHHHHH-HHHHHHHHhh-----cC
Confidence 57999999999999999999999999999999988764 22222221111 11100011 1111222232 23
Q ss_pred eEEEe-C--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHH--cC
Q 023307 165 GWLLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVV--GR 208 (284)
Q Consensus 165 g~IlD-g--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~--~R 208 (284)
.+|++ | .+........+.. ++.+|||++|.+++.+|+. .|
T Consensus 72 ~~vi~~g~~~~~~~~~~~~l~~----~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 72 NRVVATGGGMVLLEQNRQFMRA----HGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp SEEEECCTTGGGSHHHHHHHHH----HSEEEEEECCHHHHHHHHHHHHC
T ss_pred CeEEECCCcEEeCHHHHHHHHc----CCeEEEEECCHHHHHHHHhhccC
Confidence 45665 4 2233333444442 5799999999999999998 77
No 42
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.56 E-value=2.2e-16 Score=133.12 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHH-------H
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVK-------E 154 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~-------~ 154 (284)
.++++|+|+|++||||||+++.|+++++..+++++ ++++. ..+...+..+++++..+..++......++. +
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~-~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK-HLYFP-NRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMN 85 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE-EEESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE-EEecC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999877666552 22211 112344555555555444444322111111 0
Q ss_pred HhcCCCCCCCeEEEeCcccCH---HH------HHHHH---HcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 155 RLSQPDSQENGWLLDGYPRSL---SQ------ATALK---KYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 155 ~i~~~~~~~~g~IlDg~p~~~---~q------~~~l~---~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
.+......+..+|+|+++... .. ..++. .....++.+|||++|++++.+|+..|
T Consensus 86 ~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r 151 (212)
T 2wwf_A 86 EIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYG 151 (212)
T ss_dssp HHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTT
T ss_pred HHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccC
Confidence 111111235789999976431 11 12222 11236899999999999999998654
No 43
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.56 E-value=6.3e-14 Score=117.70 Aligned_cols=121 Identities=18% Similarity=0.208 Sum_probs=69.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCc--Eee----hhHHHHHHHHcCC---cchHHHHHHHHcCCCcChHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLV--HIA----AGDLLRAEIAAGS---ENGKRAKEHMEKGQLVPDEIVVTMVK 153 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~--~is----~ddlir~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~l~ 153 (284)
++++|+|+|+|||||||+++.|+++++.. ++. .++.+++.+..+. .........+.... ....+...+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~i~ 80 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATD--FSDRYERYIL 80 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHH--HHHHHHHTHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 46799999999999999999999999873 443 2334444332110 01000000000000 0000001112
Q ss_pred HHhcCCCCCCCeEEEeCcccCH-----------HHHHHHHHcCCCCcEEEEEEcCHHHHHHHHH-cCC
Q 023307 154 ERLSQPDSQENGWLLDGYPRSL-----------SQATALKKYGFQPDLFILLEVPEDTLVERVV-GRR 209 (284)
Q Consensus 154 ~~i~~~~~~~~g~IlDg~p~~~-----------~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~-~R~ 209 (284)
..+. .+..+|+|+++... +.+..+......++++|||++|.+++.+|+. .|+
T Consensus 81 ~~l~----~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 81 PMLK----SGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp HHHH----TTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHh----CCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 2222 36789999977542 1233343334458999999999999999999 775
No 44
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.54 E-value=2.4e-14 Score=119.87 Aligned_cols=112 Identities=25% Similarity=0.291 Sum_probs=70.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH-----------H
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV-----------T 150 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~-~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ 150 (284)
++++|+|+|++||||||+++.|++++ |+.+++++...+ ++..+..+++++..+......... +
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~-----~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~ 77 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQR-----STVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFAS 77 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCT-----TSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCC-----CCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999998 687776542210 223445566666544333222110 1
Q ss_pred HHHHHhcCCCCCCCeEEEeCcccC-----------HHHHHHHHHcCCCCcEEEEEEcCHHHHHH
Q 023307 151 MVKERLSQPDSQENGWLLDGYPRS-----------LSQATALKKYGFQPDLFILLEVPEDTLVE 203 (284)
Q Consensus 151 ~l~~~i~~~~~~~~g~IlDg~p~~-----------~~q~~~l~~~~~~~~~vI~L~~~~e~~~~ 203 (284)
.+...+. .+..+|+|+|+.. .+....+......++.+|||++|++++.+
T Consensus 78 ~i~~~l~----~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~ 137 (204)
T 2v54_A 78 FIQEQLE----QGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR 137 (204)
T ss_dssp HHHHHHH----TTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred HHHHHHH----CCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence 1122222 3568999987653 22223333333468999999999999887
No 45
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.52 E-value=6.1e-14 Score=115.70 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=67.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHH-cCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
++|+|+|+|||||||+|+.|++++|+++++.|++++... +.. +.+++. .|...........+...+.. .
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~--g~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~----~ 72 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT--GRS----IADIFATDGEQEFRRIEEDVVRAALAD----H 72 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--SSC----HHHHHHHHCHHHHHHHHHHHHHHHHHH----C
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc--CCC----HHHHHHHhChHHHHHHHHHHHHHHHhc----C
Confidence 469999999999999999999999999999999987753 222 122221 22211112112223222221 2
Q ss_pred CeEEEeCc--ccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 164 NGWLLDGY--PRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 164 ~g~IlDg~--p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
..+|.+|. .........+. .+.+|||++|.+++.+|+..|.
T Consensus 73 ~~vi~~g~~~v~~~~~~~~l~-----~~~vV~L~~~~e~~~~Rl~~r~ 115 (184)
T 2iyv_A 73 DGVLSLGGGAVTSPGVRAALA-----GHTVVYLEISAAEGVRRTGGNT 115 (184)
T ss_dssp CSEEECCTTGGGSHHHHHHHT-----TSCEEEEECCHHHHHHHTTCCC
T ss_pred CeEEecCCcEEcCHHHHHHHc-----CCeEEEEeCCHHHHHHHHhCCC
Confidence 23333342 11212222222 4589999999999999999874
No 46
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.51 E-value=4.5e-14 Score=125.57 Aligned_cols=122 Identities=20% Similarity=0.149 Sum_probs=76.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~-~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
+++|+|+|+|||||||+++.|++++ ++.+++.| .++..+..... +.. ..+...+.......+...+...+... ..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r~~~~~~~~-g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 77 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYRQSIMAHEE-RDE-YKYTKKKEGIVTGMQFDTAKSILYGG-DS 77 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHHHHHTTSCC-CC----CCHHHHHHHHHHHHHHHHHHTTSC-TT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHHHHhccCCc-ccc-cccchhhhhHHHHHHHHHHHHHHhhc-cC
Confidence 3689999999999999999999985 99999988 45554332111 100 00000000000112223333444211 34
Q ss_pred CCeEEEeCcccCHHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 163 ENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+.++|+|+++....+.+.+.+ ....+..+|||+++.+++++|+.+|.
T Consensus 78 g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 78 VKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp CCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 789999998877665555442 22245689999999999999999985
No 47
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.50 E-value=4.2e-13 Score=114.74 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=87.3
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHhCC----cEee-hhHHHHHHHHcCCcchHHHHHHHHcC-CCcChHHH----
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKYGL----VHIA-AGDLLRAEIAAGSENGKRAKEHMEKG-QLVPDEIV---- 148 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~~~----~~is-~ddlir~~~~~~~~~~~~~~~~~~~g-~~~~~~~~---- 148 (284)
+...++++|+|.|++||||||+++.|+++++. .++. + ++ ..+++.+..+++++... .+.+....
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~t----re--P~~t~~g~~ir~~l~~~~~~~~~~e~llf~ 89 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLT----RE--PGGTLLNESVRNLLFKAQGLDSLSELLFFI 89 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEE----ES--SCSSHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEee----eC--CCCChHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 34567889999999999999999999998754 3222 1 00 12344555555555432 21111110
Q ss_pred ---HHHHHHHhcCCCCCCCeEEEeCcc------------cCHHHHHHHHHcC--CCCcEEEEEEcCHHHHHHHHHcCCCC
Q 023307 149 ---VTMVKERLSQPDSQENGWLLDGYP------------RSLSQATALKKYG--FQPDLFILLEVPEDTLVERVVGRRLD 211 (284)
Q Consensus 149 ---~~~l~~~i~~~~~~~~g~IlDg~p------------~~~~q~~~l~~~~--~~~~~vI~L~~~~e~~~~Rl~~R~~~ 211 (284)
.+.+.+.|......+..+|+|.|. ...+.+..+.... ..||++|||++|++++++|+ +|+
T Consensus 90 a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd-- 166 (223)
T 3ld9_A 90 AMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN-- 166 (223)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC--------------
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC--
Confidence 111122122222336788889632 1234444443322 58999999999999999999 432
Q ss_pred CCCCceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhccceEEeccCcccce
Q 023307 212 PVTGKIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYEDVTVEVCDMISLSFC 279 (284)
Q Consensus 212 ~~~g~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~~~i~ID~~~~~~~v 279 (284)
+.+... .+.++..++.+..+.+.|+..+++||++.+.++|
T Consensus 167 -------------------------r~E~~~---~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV 206 (223)
T 3ld9_A 167 -------------------------GYEFAD---MEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI 206 (223)
T ss_dssp ------------------------------C---HHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC
T ss_pred -------------------------ccccch---HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH
Confidence 111111 2233334566667777787789999999998877
No 48
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.50 E-value=4.8e-14 Score=118.80 Aligned_cols=121 Identities=26% Similarity=0.230 Sum_probs=67.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHH-----------H
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVV-----------T 150 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~ 150 (284)
.++++|+|+|++||||||+++.|+++++..+++++.+ ++. ..++..+..+++++..+...+..... .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 84 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL-RFP-ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVP 84 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE-ESS-CTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe-eCC-CCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999875444433211 100 00123344455555443333332111 1
Q ss_pred HHHHHhcCCCCCCCeEEEeCcc-----c-------CHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 151 MVKERLSQPDSQENGWLLDGYP-----R-------SLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 151 ~l~~~i~~~~~~~~g~IlDg~p-----~-------~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
.+...+. .+..+|+|.+. . ..+.+..+......++.+|||++|++++.+|+.+|
T Consensus 85 ~i~~~l~----~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~ 150 (215)
T 1nn5_A 85 LIKEKLS----QGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFG 150 (215)
T ss_dssp HHHHHHH----TTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC----
T ss_pred HHHHHHH----CCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccC
Confidence 1222222 35788999532 1 12222222222245899999999999999999643
No 49
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.49 E-value=8.9e-14 Score=113.12 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=67.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHhcCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
+.+|+|+|++||||||+++.|++++|++++++|+++++.. +. .+.+++.. |.....+...+.+...+ .
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~--g~----~~~~~~~~~g~~~~~~~~~~~l~~~~-~---- 75 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV--GL----SVREIFEELGEDNFRMFEKNLIDELK-T---- 75 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH--TS----CHHHHHHHTCHHHHHHHHHHHHHHHH-T----
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh--CC----CHHHHHHHhCHHHHHHHHHHHHHHHH-h----
Confidence 4689999999999999999999999999999999987753 22 22333322 22111111122222222 1
Q ss_pred CCeE-EEe-C--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 163 ENGW-LLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 163 ~~g~-IlD-g--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
...+ |+. | ++.. .. + ..++.+|||++|.+++.+|+..|
T Consensus 76 ~~~~~Vi~~g~g~~~~-~~---l----~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 76 LKTPHVISTGGGIVMH-EN---L----KGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp CSSCCEEECCGGGGGC-GG---G----TTSEEEEEEECCHHHHHHHHCC-
T ss_pred cCCCEEEECCCCEech-hH---H----hcCCEEEEEECCHHHHHHHHhcc
Confidence 1233 444 3 3322 11 2 24789999999999999999887
No 50
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.48 E-value=9.2e-14 Score=114.31 Aligned_cols=110 Identities=22% Similarity=0.303 Sum_probs=72.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
+++.+|+|+|+|||||||+++.|++.+++.++++|++++.... ....+.. . .......+.+.+.+...+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~--- 79 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL-YDGYDEE----Y-DCPILDEDRVVDELDNQMRE--- 79 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTC-EEEEETT----T-TEEEECHHHHHHHHHHHHHH---
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcch-hhhhhhh----h-cCccCChHHHHHHHHHHHhc---
Confidence 4556899999999999999999999999999999999877511 0000000 0 00112233344444444432
Q ss_pred CCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.++|+|+..... +.. ..++.+|||+++.+++.+|+.+|+
T Consensus 80 --g~~vv~~~~~~~-----~~~--~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 80 --GGVIVDYHGCDF-----FPE--RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp --CCEEEECSCCTT-----SCG--GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred --CCEEEEechhhh-----cch--hcCCEEEEEECCHHHHHHHHHHcC
Confidence 467777643221 000 026799999999999999999985
No 51
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.48 E-value=1.7e-13 Score=121.33 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=75.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCC-----CcChH---------
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVPDE--------- 146 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~-----~~~~~--------- 146 (284)
+.++++|+|+|++||||||+|+.|+ .+|++++++|++.+.....+......+.+.+.... .+...
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3456899999999999999999999 68999999999988766555444333333221110 01100
Q ss_pred ---------HHH----HHHHHHhcCCC-CCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 147 ---------IVV----TMVKERLSQPD-SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 147 ---------~~~----~~l~~~i~~~~-~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
... ..+.+.+.... .....+|+||...... .+. ..++.+|||++|.+++++|+..|.
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~---~~~d~vI~l~a~~ev~~~Rl~~R~ 221 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ---SMVHEVWTVVIPETEAVRRIVERD 221 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG---GGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH---HhCCEEEEEcCCHHHHHHHHHHcC
Confidence 000 11112221111 1135799999532111 111 237899999999999999999883
No 52
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.47 E-value=8.7e-14 Score=118.04 Aligned_cols=118 Identities=16% Similarity=0.252 Sum_probs=71.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCC-----CcChHH----------
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVPDEI---------- 147 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~-----~~~~~~---------- 147 (284)
++++|+|+|++||||||+++.|++ +|+++++.|++.+.....+......+.+.+.... .+....
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 467999999999999999999988 9999999999988755443333333333221110 111111
Q ss_pred --------HHHHHH----HHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 148 --------VVTMVK----ERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 148 --------~~~~l~----~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
....+. ..+... .+..+|+|+ +...+.. +. ..++.+|||+++.+++.+|+..|.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~-~~l~~~~--~~---~~~d~vi~l~~~~e~~~~Rl~~R~ 147 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVV-PLLVENS--LY---KKANRVLVVDVSPETQLKRTMQRD 147 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEEC-TTTTTTT--GG---GGCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEe-eeeeccC--cc---ccCCEEEEEECCHHHHHHHHHHcC
Confidence 111111 112111 134455555 3322111 11 247899999999999999999873
No 53
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.46 E-value=3.5e-13 Score=109.27 Aligned_cols=110 Identities=17% Similarity=0.280 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHhcCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
++|+|+|++||||||+++.|++++|+++++.|++.+... + ..+.+++.. +...... +...+...+.. .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~--g----~~~~~~~~~~~~~~~~~-~~~~~l~~l~~----~ 69 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE--G----LSIPQIFEKKGEAYFRK-LEFEVLKDLSE----K 69 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH--T----SCHHHHHHHSCHHHHHH-HHHHHHHHHTT----S
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc--C----CCHHHHHHHhChHHHHH-HHHHHHHHHhc----c
Confidence 479999999999999999999999999999999987653 1 223333322 2100001 11222233332 3
Q ss_pred CeEEEe-C--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 164 NGWLLD-G--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 164 ~g~IlD-g--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
..+|++ | ..........+. .++.+|||++|.+++++|+..|.
T Consensus 70 ~~~Vi~~g~~~~~~~~~~~~l~----~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 70 ENVVISTGGGLGANEEALNFMK----SRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp SSEEEECCHHHHTCHHHHHHHH----TTSEEEEEECCHHHHHHHCBCTT
T ss_pred CCeEEECCCCEeCCHHHHHHHH----cCCEEEEEECCHHHHHHHHhCCC
Confidence 456665 4 222333444444 36899999999999999998874
No 54
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.46 E-value=2e-13 Score=114.70 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=68.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCC-----cC--------------
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VP-------------- 144 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~-----~~-------------- 144 (284)
+++|+|+|++||||||+++.|++ +|+++++.|++.+.....+......+.+.+..... ..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 36899999999999999999988 99999999999876433322211111121111110 00
Q ss_pred ----hHH----HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 145 ----DEI----VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 145 ----~~~----~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
... +...+.+.+... .+.++|+|+. ...+. . +. ..++.+|||+++.+++.+|+..|.
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~-~l~e~-~-~~---~~~d~vi~l~~~~e~~~~Rl~~R~ 145 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKLAEQ--TAPYTLFVVP-LLIEN-K-LT---ALCDRILVVDVSPQTQLARSAQRD 145 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CSSEEEEECT-TTTTT-T-CG---GGCSEEEEEECCHHHHHHHHC---
T ss_pred HHHHHhccCHHHHHHHHHHHHhc--CCCEEEEEec-hhhhc-C-cH---hhCCEEEEEECCHHHHHHHHHHcC
Confidence 011 111122223322 2457888973 11111 1 11 246899999999999999999884
No 55
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.45 E-value=3.4e-12 Score=104.29 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChH---HHHHHHHHHhcC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE---IVVTMVKERLSQ 158 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~l~~~i~~ 158 (284)
+.+.+|+|+|++||||||+++.|++.+|..+++.|++.... .+.. ...|....+. .....+...+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~---------~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 75 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---------NIEK-MASGEPLNDDDRKPWLQALNDAAFA 75 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH---------HHHH-HHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH---------HHHH-hhcCcCCCccccccHHHHHHHHHHH
Confidence 45679999999999999999999999999999988764221 0000 0011111110 001111111111
Q ss_pred CCCCCCeEEEeCcccCHHHHHHHHHcCCCCc-EEEEEEcCHHHHHHHHHcCC
Q 023307 159 PDSQENGWLLDGYPRSLSQATALKKYGFQPD-LFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 159 ~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~-~vI~L~~~~e~~~~Rl~~R~ 209 (284)
....+..+|+|.........+.+...+ ++ .+|||++|.+++.+|+..|+
T Consensus 76 ~~~~~~~~vi~~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 76 MQRTNKVSLIVCSALKKHYRDLLREGN--PNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp HHHHCSEEEEECCCCSHHHHHHHHTTC--TTEEEEEEECCHHHHHHHHHTST
T ss_pred HHhcCCcEEEEeCchHHHHHHHHHhcC--CCEEEEEEECCHHHHHHHHHhcc
Confidence 111246789985222334444555432 34 79999999999999999985
No 56
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.45 E-value=1e-12 Score=110.11 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=72.7
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHH-------HHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEI-------VVTMV 152 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~l 152 (284)
....+.+|+|+|++||||||+++.|++.+|..+++.+++...... .....+....+.. +...+
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~----------~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENI----------ATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHH----------HHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHH----------HHHhcCCCCCCcccccHHHHHHHHH
Confidence 344567999999999999999999999999999998776422100 0011122221111 11122
Q ss_pred HHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCC
Q 023307 153 KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 153 ~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
...+. .+..+|+|.........+.+.... ....+|||+++.+++.+|+..|+.
T Consensus 95 ~~~~~----~g~~viid~~~~~~~~~~~l~~~~-~~~~vv~l~~~~e~l~~Rl~~R~~ 147 (200)
T 4eun_A 95 DARAD----AGVSTIITCSALKRTYRDVLREGP-PSVDFLHLDGPAEVIKGRMSKREG 147 (200)
T ss_dssp HHHHH----TTCCEEEEECCCCHHHHHHHTTSS-SCCEEEEEECCHHHHHHHHTTCSC
T ss_pred HHHHh----cCCCEEEEchhhhHHHHHHHHHhC-CceEEEEEeCCHHHHHHHHHhccc
Confidence 22222 256788887444444444444332 356899999999999999998864
No 57
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.45 E-value=1.6e-13 Score=112.41 Aligned_cols=107 Identities=20% Similarity=0.186 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHH-cCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHME-KGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
++|+|+|+|||||||+++.|++++++++++.|++++... +.. +.+++. .|.....+.....+ ..+.. .
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~--g~~----~~~~~~~~g~~~~~~~~~~~~-~~l~~----~ 73 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF--NQK----VSEIFEQKRENFFREQEQKMA-DFFSS----C 73 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH--TSC----HHHHHHHHCHHHHHHHHHHHH-HHHTT----C
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc--CCC----HHHHHHHcCHHHHHHHHHHHH-HHHHc----c
Confidence 479999999999999999999999999999999887642 212 222221 12111111111222 22322 3
Q ss_pred CeEEEe-CcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 164 NGWLLD-GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 164 ~g~IlD-g~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
..+|++ |...... .. +. ..+.+|||+++.+++.+|+..|
T Consensus 74 ~~~vi~~g~~~~~~-~~-l~----~~~~~i~l~~~~e~~~~R~~~r 113 (175)
T 1via_A 74 EKACIATGGGFVNV-SN-LE----KAGFCIYLKADFEYLKKRLDKD 113 (175)
T ss_dssp CSEEEECCTTGGGS-TT-GG----GGCEEEEEECCHHHHTTCCCGG
T ss_pred CCEEEECCCCEehh-hH-Hh----cCCEEEEEeCCHHHHHHHHhcc
Confidence 456666 5322211 11 22 2468999999999999998776
No 58
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.44 E-value=6.9e-13 Score=112.22 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=80.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCC-----cCh------------
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-----VPD------------ 145 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~-----~~~------------ 145 (284)
.+.-|.|+|++||||||++++|++ +|++++|+|.+.++.+..+......+.+.+....+ +..
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 345799999999999999999987 99999999999999888776666665555533222 211
Q ss_pred ------HHHHHHH----HHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 146 ------EIVVTMV----KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 146 ------~~~~~~l----~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+++..+ .+.+.+. ...-+|+|. |.-.+.. .+.. .+|.+|+++||+++.++|+.+|+
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~~~~--~~~~vv~d~-pLL~E~~-~~~~---~~D~vi~V~ap~e~r~~Rl~~Rd 153 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREARDA--QGPYVIFVV-PLLVESR-NWKA---RCDRVLVVDCPVDTQIARVMQRN 153 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC--CSSSEEEEC-TTCTTCH-HHHH---HCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhc--CCCEEEEEE-ecccccC-Cccc---cCCeEEEEECCHHHHHHHHHhcC
Confidence 1222222 3333332 234578886 2222201 1121 37899999999999999999984
No 59
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.44 E-value=5e-13 Score=116.83 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=71.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH---hCCcEe--ehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhc
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK---YGLVHI--AAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~---~~~~~i--s~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~ 157 (284)
++++|+|+|+|||||||+|+.|++. +|+.++ +.|.+. ..+......+. .. ........+...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~-~~l~~~~~~~e---~~-------~~~~~~~~i~~~l~ 71 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR-ESFPVWKEKYE---EF-------IKKSTYRLIDSALK 71 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH-TTSSSCCGGGH---HH-------HHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH-HHHhhhhHHHH---HH-------HHHHHHHHHHHHhh
Confidence 4679999999999999999999998 688877 755543 22111000000 00 00111223333332
Q ss_pred CCCCCCCeEEEeCcccCHHHHHHHH---HcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 158 QPDSQENGWLLDGYPRSLSQATALK---KYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 158 ~~~~~~~g~IlDg~p~~~~q~~~l~---~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
. ..+|+|+..........+. .....++++|||++|.+++.+|+.+|+
T Consensus 72 ----~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 72 ----N-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp ----T-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred ----C-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 2 7899998655544444333 234467899999999999999999985
No 60
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.43 E-value=1.3e-12 Score=111.08 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=72.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHH----cCCcch--HHHHHHHH-----------------cC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA----AGSENG--KRAKEHME-----------------KG 140 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~----~~~~~~--~~~~~~~~-----------------~g 140 (284)
+++|+|+|++||||||+++.|++.+|+++++.|++++.... .+.+.. ..+.++.. .+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 46899999999999999999999999999999999987542 343332 12222211 11
Q ss_pred CCcChH-----------------HHHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHH
Q 023307 141 QLVPDE-----------------IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE 203 (284)
Q Consensus 141 ~~~~~~-----------------~~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~ 203 (284)
..+.+. .+.+.+........ .+.++|+||..... .....++++|||+++.+++.+
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~vldg~~~~~-------~~~~~~d~~i~l~~~~e~~~~ 156 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFR-ELPGLIADGRDMGT-------VVFPDAPVKIFLDASSEERAH 156 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTCEEEEESSCCC-------CCCTTCSEEEEEECCHHHHHH
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHH-hCCCEEEECCCccc-------eEecCCCEEEEEeCCHHHHHH
Confidence 111111 11222222222222 35799999963211 111257899999999999999
Q ss_pred HHH
Q 023307 204 RVV 206 (284)
Q Consensus 204 Rl~ 206 (284)
|+.
T Consensus 157 R~~ 159 (227)
T 1cke_A 157 RRM 159 (227)
T ss_dssp HHH
T ss_pred HHH
Confidence 954
No 61
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.43 E-value=2.5e-13 Score=115.66 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCC-CcC-hHHHHHHH------HH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-LVP-DEIVVTMV------KE 154 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~-~~~-~~~~~~~l------~~ 154 (284)
++++|+|.|++||||||+++.|++.++..+.- +++ ...+++.|..+++++.... ... .....-.. .+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~----~~e-p~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~ 78 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKL----LKF-PERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVD 78 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEE----EES-SCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceE----EEe-cCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999863221 111 1135677777888776543 121 11110000 11
Q ss_pred HhcCCCCCCCeEEEeCccc--------------CHHHHHHHHHcCCCCcEEEEE-EcCHHHHHHHHHcCCCCCCCCceee
Q 023307 155 RLSQPDSQENGWLLDGYPR--------------SLSQATALKKYGFQPDLFILL-EVPEDTLVERVVGRRLDPVTGKIYH 219 (284)
Q Consensus 155 ~i~~~~~~~~g~IlDg~p~--------------~~~q~~~l~~~~~~~~~vI~L-~~~~e~~~~Rl~~R~~~~~~g~~~~ 219 (284)
.|......++.||.|.|.. .+.++..+......||++||| ++|++++.+|+..|.
T Consensus 79 ~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~---------- 148 (216)
T 3tmk_A 79 KIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD---------- 148 (216)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC----------
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc----------
Confidence 2222223467888896321 223333333345679999999 999999988864331
Q ss_pred ccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHH----hhccceEEe-ccCccccee
Q 023307 220 VKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSL----YEDVTVEVC-DMISLSFCF 280 (284)
Q Consensus 220 ~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~----y~~~~i~ID-~~~~~~~v~ 280 (284)
.+.+. . .+.+++ ++.|..+.+. ++..+++|| |+.+.++|.
T Consensus 149 ----------------dr~E~-~-~f~~rv---r~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~ 193 (216)
T 3tmk_A 149 ----------------ERYET-V-KFQEKV---KQTFMKLLDKEIRKGDESITIVDVTNKGIQEVE 193 (216)
T ss_dssp ----------------CTTCC-H-HHHHHH---HHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHH
T ss_pred ----------------ccccH-H-HHHHHH---HHHHHHHHHhccccCCCCEEEEeCCCCCHHHHH
Confidence 11221 2 333333 4444444443 566799999 888887664
No 62
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.42 E-value=9.2e-13 Score=114.63 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=72.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc-CCCcChHHHHHHHHHHhcCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
+.+|+|+|++||||||+++.|++.+|+.+++.|++++... .+.. +.+++.. |.....+...+.+.+.... .
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-~g~~----i~~i~~~~ge~~fr~~e~~~l~~l~~~---~ 119 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-KGTS----VAEIFEHFGESVFREKETEALKKLSLM---Y 119 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-TTSC----HHHHHHHHCHHHHHHHHHHHHHHHHHH---C
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-cCcc----HHHHHHHhCcHHHHHHHHHHHHHHHhh---c
Confidence 5689999999999999999999999999999999887743 1222 3333322 3211111112222222211 0
Q ss_pred CCeEEEeC--cccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 163 ENGWLLDG--YPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 163 ~~g~IlDg--~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
...+|.+| .+........+. .+.+|||+++.+++.+|+..+
T Consensus 120 ~~~Via~GgG~v~~~~~~~~l~-----~~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 120 HQVVVSTGGGAVIRPINWKYMH-----KGISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp SSEEEECCGGGGGSHHHHHHHT-----TSEEEEEECCHHHHHHHHHC-
T ss_pred CCcEEecCCCeecCHHHHHHHh-----CCcEEEEECCHHHHHHHHhhc
Confidence 24555554 455555555553 268999999999999999864
No 63
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.42 E-value=4.2e-13 Score=112.45 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCC-----CcChHHH-----------
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ-----LVPDEIV----------- 148 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~----------- 148 (284)
++|+|+|++||||||+++.|++ +|++++++|+++++....+......+.+.+.... ......+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 5899999999999999999999 9999999999987654332222222222221110 0111100
Q ss_pred ---HHHH--------HHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 149 ---VTMV--------KERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 149 ---~~~l--------~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
..+. ...+... ..+..+|+|+....... +. ..++.+|||+++.+++.+|+..|+
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~-~~~~~vive~~~l~~~~---~~---~~~~~~i~l~~~~e~~~~Rl~~R~ 145 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNL-SEDTLFILEASLLVEKG---TY---KNYDKLIVVYAPYEVCKERAIKRG 145 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHS-CTTCCEEEECSCSTTTT---CG---GGSSEEEEECCCHHHHHHHHHHTC
T ss_pred HHHHHhhCHHHHHHHHHHHHhc-cCCCEEEEEccccccCC---ch---hhCCEEEEEECCHHHHHHHHHHcC
Confidence 1111 1111111 11167899984211110 11 137899999999999999999884
No 64
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.40 E-value=4.6e-12 Score=105.57 Aligned_cols=30 Identities=33% Similarity=0.414 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
++|+|+|++||||||+++.|+++++..++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 479999999999999999999999987774
No 65
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.37 E-value=2.6e-12 Score=108.16 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=65.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHc-CCcchHHHHHHHHcCC-Cc------------ChHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA-GSENGKRAKEHMEKGQ-LV------------PDEIV 148 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~-~~~~~~~~~~~~~~g~-~~------------~~~~~ 148 (284)
+.++|.|.|++||||||+++.|++++|++++| +++++..... +-+. ..+....+... +. ..+.+
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQDI 82 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHHH
Confidence 34699999999999999999999999999999 8887653221 1110 11111111110 00 00011
Q ss_pred HHHHHHHhcCCCC-CCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 149 VTMVKERLSQPDS-QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 149 ~~~l~~~i~~~~~-~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
.....+.+.+... ...++|++|.- -. .+... ....+.|||++|.+++.+|+.++
T Consensus 83 ~~~~~~~i~~la~~~~~~~Vi~Gr~--g~---~vl~~-~~~~~~V~L~A~~e~r~~R~~~~ 137 (201)
T 3fdi_A 83 AIRQFNFIRKKANEEKESFVIVGRC--AE---EILSD-NPNMISAFILGDKDTKTKRVMER 137 (201)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEESTT--HH---HHTTT-CTTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEEECC--cc---hhcCC-CCCeEEEEEECCHHHHHHHHHHH
Confidence 1222222222210 14578888731 11 11111 12358999999999999999875
No 66
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.37 E-value=9.7e-13 Score=107.18 Aligned_cols=112 Identities=15% Similarity=0.233 Sum_probs=66.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
+.+|+|+|++||||||+++.|++.+++++++.|++++... +...+..++.. |..........++ ..+.. .
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~--~~~i~~i~~~~---g~~~~~~~~~~~l-~~l~~----~ 73 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT--GADVGWVFDLE---GEEGFRDREEKVI-NELTE----K 73 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH--TSCHHHHHHHH---HHHHHHHHHHHHH-HHHHT----S
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh--CcCHHHHHHHH---hHHHHHHHHHHHH-HHHHh----C
Confidence 3579999999999999999999999999999888876543 22222222111 1000000011122 22222 2
Q ss_pred CeEEEe---CcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 164 NGWLLD---GYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 164 ~g~IlD---g~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
..+++. +.+......+.+.. .++++||+++.+++.+|+..|.
T Consensus 74 ~~~v~~~~~~~~~~~~~~~~l~~----~~~~i~l~~~~~~l~~R~~~r~ 118 (173)
T 1kag_A 74 QGIVLATGGGSVKSRETRNRLSA----RGVVVYLETTIEKQLARTQRDK 118 (173)
T ss_dssp SSEEEECCTTGGGSHHHHHHHHH----HSEEEECCCCHHHHHSCC----
T ss_pred CCeEEECCCeEEecHHHHHHHHh----CCEEEEEeCCHHHHHHHHhCCC
Confidence 355554 33333334444443 4579999999999999998874
No 67
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.35 E-value=3.4e-12 Score=104.78 Aligned_cols=113 Identities=13% Similarity=0.162 Sum_probs=62.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEe-ehhHHHHHHHHcCCcchHHHHHHHHcCCCc----Ch--HHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHI-AAGDLLRAEIAAGSENGKRAKEHMEKGQLV----PD--EIVVTMVKE 154 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~i-s~ddlir~~~~~~~~~~~~~~~~~~~g~~~----~~--~~~~~~l~~ 154 (284)
+++++|+|+|+|||||||+|+.|++++++.++ +.+.+ +..+.+++..|... .. ..+.+.+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~-----------g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~ 71 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM-----------GQALRKLTPGFSGDPQEHPMWIPLMLDALQY 71 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH-----------HHHHHHTSTTCCSCGGGSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh-----------HHHHHHhCccccchhhhhHHHHHHHHHHHHH
Confidence 35679999999999999999999999999988 42111 11122222111100 00 122334444
Q ss_pred HhcCCCCCCCeEEEeCcccCHHH----HHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 155 RLSQPDSQENGWLLDGYPRSLSQ----ATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 155 ~i~~~~~~~~g~IlDg~p~~~~q----~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+.. .+..+|+|+....... ...+...+. ...+|||+++.+++.+|+..|.
T Consensus 72 ~l~~---~g~~vi~d~~~~~~~~~~~~~~~l~~~~~-~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 72 ASRE---AAGPLIVPVSISDTARHRRLMSGLKDRGL-SVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp HHHH---CSSCEEEEECCCCHHHHHHHHHHHHHTTC-CCEEEEEECCHHHHHHHHHTC-
T ss_pred HHHh---CCCcEEEeeeccCHHHHHHHHHHHHhcCC-ceEEEEEeCCHHHHHHHHHhcc
Confidence 4422 1456888875433322 223333332 3366999999999999999885
No 68
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.34 E-value=4.6e-12 Score=106.44 Aligned_cols=140 Identities=14% Similarity=0.260 Sum_probs=79.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-cEeehhHHHHHHHH---cCCc----chHHHHHHHHcCCCcChH-------
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEIA---AGSE----NGKRAKEHMEKGQLVPDE------- 146 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~-~~is~ddlir~~~~---~~~~----~~~~~~~~~~~g~~~~~~------- 146 (284)
..+++|+|+|++||||||+++.|++.++- ..++..+..|+... .+.. ....+.....++.++...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 45678999999999999999999998842 22222111111000 0000 001222223333332210
Q ss_pred -HHHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCC-CcEEEEEE-cCHHHHHHHHHcCCCCCCCCceeeccCC
Q 023307 147 -IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQ-PDLFILLE-VPEDTLVERVVGRRLDPVTGKIYHVKYS 223 (284)
Q Consensus 147 -~~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~-~~~vI~L~-~~~e~~~~Rl~~R~~~~~~g~~~~~~~~ 223 (284)
.....+...+. .++.+|+|+.+....+ +...... ..++|||+ ++.+++.+|+..|+.
T Consensus 90 ~~~~~~i~~~l~----~g~~vi~d~~~~~~~~---l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~------------- 149 (204)
T 2qor_A 90 GTLKSEYDLAVG----EGKICLFEMNINGVKQ---LKESKHIQDGIYIFVKPPSIDILLGRLKNRNT------------- 149 (204)
T ss_dssp EEEHHHHHHHHH----TTCEEEEECCHHHHHH---HHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT-------------
T ss_pred cCCHHHHHHHHH----cCCeEEEEECHHHHHH---HHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC-------------
Confidence 00122333343 2788999986544433 3333211 24889998 999999999998852
Q ss_pred CCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHH
Q 023307 224 PPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVE 257 (284)
Q Consensus 224 ~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~ 257 (284)
++++.+.+|+...+....
T Consensus 150 ----------------~~~~~i~~rl~~~~~~~~ 167 (204)
T 2qor_A 150 ----------------EKPEEINKRMQELTREMD 167 (204)
T ss_dssp ----------------SCHHHHHHHHHHHHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHHHH
Confidence 345778888877665544
No 69
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.34 E-value=3.7e-12 Score=106.21 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=71.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHc---CCCcChHHH---------
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEK---GQLVPDEIV--------- 148 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~---g~~~~~~~~--------- 148 (284)
..++++|+|+|++||||||+++.|++. |+++++.|++++... .+.+ ..+.+.+.. ...+....+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-~~~~--~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~ 80 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-ENKE--EELKRLFPEAVVGGRLDRRALARLVFSDPE 80 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-HHTH--HHHHHHCGGGEETTEECHHHHHHHHTTSHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-CChH--HHHHHHHHHHHhCCCcCHHHHHHHHhCCHH
Confidence 345789999999999999999999998 999999999987765 2222 111111110 001111111
Q ss_pred ---------HHHH-HHHhcCCCCC-CCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 149 ---------VTMV-KERLSQPDSQ-ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 149 ---------~~~l-~~~i~~~~~~-~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
...+ ...+...... +..+|+|+. ..... .+. ..++.+|||+++.+++.+|+..|.
T Consensus 81 ~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~-~l~~~--~~~---~~~d~~i~l~~~~e~~~~R~~~R~ 146 (203)
T 1uf9_A 81 RLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIP-LLFEK--GWE---GRLHGTLLVAAPLEERVRRVMARS 146 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECT-TTTTT--TCG---GGSSEEEEECCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEec-ceecc--Cch---hhCCEEEEEECCHHHHHHHHHHcC
Confidence 1111 1111111111 467888872 11110 011 136899999999999999999884
No 70
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.32 E-value=3.2e-11 Score=100.86 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=71.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHH----cCCcch--HHHHHHHH-----------------cCCC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA----AGSENG--KRAKEHME-----------------KGQL 142 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~----~~~~~~--~~~~~~~~-----------------~g~~ 142 (284)
+|+|+|++||||||+++.|++.+|+++++.|++.+.... .+.+.. ..+.+... .|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 899999999999999999999999999999999887532 222211 11222211 1111
Q ss_pred cC----hH-------------HHHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHH
Q 023307 143 VP----DE-------------IVVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205 (284)
Q Consensus 143 ~~----~~-------------~~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 205 (284)
+. .. .+.+.+...+.... .++|+||..... .....++++|||++|.+++.+|+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~vi~g~~~~~-------~~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP---PPFVAEGRDMGT-------AVFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC---SCEEEEESSCCC-------CCCTTCSEEEEEECCHHHHHHHH
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc---CCEEEEccceeE-------EEecCCcEEEEEECCHHHHHHHH
Confidence 11 01 11122222222222 589999853220 11124789999999999999999
Q ss_pred HcCC
Q 023307 206 VGRR 209 (284)
Q Consensus 206 ~~R~ 209 (284)
..|.
T Consensus 154 ~~r~ 157 (208)
T 3ake_A 154 ARER 157 (208)
T ss_dssp HHTS
T ss_pred Hhhc
Confidence 8884
No 71
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.32 E-value=1.7e-11 Score=104.77 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA 124 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~ 124 (284)
+.++|.|.|++||||||+++.|++++|+++++ +++++....
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d-~~~~~~~a~ 53 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYD-DDILKLASE 53 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEEC-HHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc-HHHHHHHHH
Confidence 35799999999999999999999999999999 777776544
No 72
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.30 E-value=1.7e-12 Score=109.08 Aligned_cols=119 Identities=16% Similarity=0.154 Sum_probs=71.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh-CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCC---CcChHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY-GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQ---LVPDEIVVTMVKERL 156 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~-~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~l~~~i 156 (284)
...+.+|+|+|++||||||+++.|++.+ ++.+++.|+++..... -.... ..+.... .+....+.+.+...+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~l~~~i~~~l 92 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE--IETDK---NGFLQYDVLEALNMEKMMSAISCWM 92 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG--SCBCT---TSCBCCSSGGGBCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH--hhccc---cCCChhHHHHHhHHHHHHHHHHHHH
Confidence 3456799999999999999999999988 8999999987653210 00000 0000000 011112222222211
Q ss_pred cC---C--------CCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 157 SQ---P--------DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 157 ~~---~--------~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.. . ......+|+||+.... .+ .....++.+|||+++.+++.+|+..|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~vi~eg~~~~~--~~---~~~~~~d~~i~l~~~~~~~~~R~~~R~ 151 (207)
T 2qt1_A 93 ESARHSVVSTDQESAEEIPILIIEGFLLFN--YK---PLDTIWNRSYFLTIPYEECKRRRSTRV 151 (207)
T ss_dssp HHHTTSSCCC-----CCCCEEEEECTTCTT--CG---GGTTTCSEEEEEECCHHHHHHHHHHSC
T ss_pred hCCCCCCcCCCeeecCCCCEEEEeehHHcC--cH---HHHHhcCeeEEEECCHHHHHHHHHHcC
Confidence 11 0 1124679999964321 11 112357899999999999999998875
No 73
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.28 E-value=2.2e-11 Score=105.94 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=37.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI 123 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~ 123 (284)
..+.+|+|+|++||||||+++.|++++|+.+++.|.+++...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~ 66 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLA 66 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhH
Confidence 345799999999999999999999999999999999997653
No 74
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.26 E-value=1.8e-11 Score=106.27 Aligned_cols=117 Identities=24% Similarity=0.317 Sum_probs=71.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCc----------EeehhHHHHHHHHcCCcchHHHHHHHHcCCC-------c
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLV----------HIAAGDLLRAEIAAGSENGKRAKEHMEKGQL-------V 143 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~----------~is~ddlir~~~~~~~~~~~~~~~~~~~g~~-------~ 143 (284)
..++++|+|+|++||||||+|+.|++.+|+. ++++|++++... ...+. ....|.. .
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~------~~~~~-~~~~g~~~f~~~~~~ 91 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT------SEQKA-KALKGQFNFDHPDAF 91 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC------HHHHH-HHHTTCSCTTSGGGB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC------hhhhh-hhccCCCCCCCcchh
Confidence 3466899999999999999999999999987 799999875310 01111 1111211 1
Q ss_pred ChHHHHHHHHHHhcCC--------------------CCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHH
Q 023307 144 PDEIVVTMVKERLSQP--------------------DSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVE 203 (284)
Q Consensus 144 ~~~~~~~~l~~~i~~~--------------------~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~ 203 (284)
..+.+.+.+....... ......+|+||....... .+.. .++.+|||+++.+++++
T Consensus 92 d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~--~~~~---~~d~vi~l~~~~e~~~~ 166 (252)
T 1uj2_A 92 DNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQ--EVRD---LFQMKLFVDTDADTRLS 166 (252)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSH--HHHH---HCSEEEEEECCHHHHHH
T ss_pred hHHHHHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCH--HHHH---hcCeeEEEeCCHHHHHH
Confidence 1122233333322100 012468999995432111 1221 25789999999999999
Q ss_pred HHHcCC
Q 023307 204 RVVGRR 209 (284)
Q Consensus 204 Rl~~R~ 209 (284)
|+..|.
T Consensus 167 R~~~R~ 172 (252)
T 1uj2_A 167 RRVLRD 172 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998873
No 75
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.26 E-value=1.7e-11 Score=103.69 Aligned_cols=40 Identities=23% Similarity=0.482 Sum_probs=36.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~ 122 (284)
++++|+|+|++||||||+++.|++.+|+++++.|++++..
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~ 41 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRAL 41 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHH
Confidence 3568999999999999999999999999999999999874
No 76
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.25 E-value=1.2e-10 Score=95.13 Aligned_cols=124 Identities=12% Similarity=0.096 Sum_probs=66.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEe--ehhHHHHHHHHcC--CcchHHHHHHHHcCCCcChH---HHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI--AAGDLLRAEIAAG--SENGKRAKEHMEKGQLVPDE---IVVTMVKER 155 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~i--s~ddlir~~~~~~--~~~~~~~~~~~~~g~~~~~~---~~~~~l~~~ 155 (284)
.+++|+|+|+|||||||+++.|+++++..++ +.|++........ ...+..+. ..+.....+ .+...+...
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 78 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD---ADGGVSIGPEFRALEGAWAEG 78 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEEC---TTSCEEECHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhcccc---CCCccccchhHHHHHHHHHHH
Confidence 3568999999999999999999999987655 4666654321100 00000000 000000011 111111111
Q ss_pred hcCCCCCCCeEEEeCccc-CHHHHHHHHH-cCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 156 LSQPDSQENGWLLDGYPR-SLSQATALKK-YGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 156 i~~~~~~~~g~IlDg~p~-~~~q~~~l~~-~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+......+..+|+|+... .....+.+.+ ....+..+|||+++.+++.+|+..|+
T Consensus 79 ~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 79 VVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC
Confidence 111112356799998432 2111111111 11224468899999999999999885
No 77
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.24 E-value=5.5e-11 Score=99.31 Aligned_cols=43 Identities=26% Similarity=0.482 Sum_probs=39.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHc
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAA 125 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~ 125 (284)
...+|+|+|++||||||+++.|++.+|++++++|+++++....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~ 53 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE 53 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH
Confidence 3478999999999999999999999999999999999887654
No 78
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.22 E-value=8.1e-11 Score=101.06 Aligned_cols=42 Identities=29% Similarity=0.615 Sum_probs=37.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAE 122 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~ 122 (284)
...+.+|+|+|++||||||+++.|++.+|+++++.|++.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~ 54 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAA 54 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcc
Confidence 345678999999999999999999999999999999999874
No 79
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.19 E-value=4.9e-11 Score=103.63 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=70.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CcEeehhHHHHHHHHc----CCcchHHHHHHHHcCCCcChHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLLRAEIAA----GSENGKRAKEHMEKGQLVPDEIVVTMVKE 154 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~--~~~is~ddlir~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 154 (284)
...+.+|+|+|+|||||||+++.|++.++ +.+++.|.+ +..... ....+..+.++.... ....+...+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~-r~~~~~~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~~ 104 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF-RSQHPHYLELQQEYGKDSVEYTKDF---AGKMVESLVTK 104 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG-GTTSTTHHHHHTTCSSTTHHHHHHH---HHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH-HHhchhHHHHHHHcCchHHHHhhHH---HHHHHHHHHHH
Confidence 34568999999999999999999999986 566675543 321100 011111111111100 01112222222
Q ss_pred HhcCCCCCCCeEEEeCcccCHHHHHH----HHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 155 RLSQPDSQENGWLLDGYPRSLSQATA----LKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 155 ~i~~~~~~~~g~IlDg~p~~~~q~~~----l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.+. .+.+||+|+++....+... +...+ ....+++++++.+++.+|+.+|.
T Consensus 105 ~~~----~g~~vVid~~~~~~~~~~~~~~~l~~~g-~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 105 LSS----LGYNLLIEGTLRTVDVPKKTAQLLKNKG-YEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHH----TTCCEEEECCTTSSHHHHHHHHHHHHTT-CEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHh----cCCCEEEeCCCCCHHHHHHHHHHHHHCC-CcEEEEEEeCCHHHHHHHHHHHH
Confidence 232 2568999998776554332 33333 34456788999999999998874
No 80
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.19 E-value=2.1e-10 Score=101.63 Aligned_cols=119 Identities=15% Similarity=0.207 Sum_probs=70.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh--CCcEeehhHHHHHHHHcCCcchHHHHHHHHcC----CCcChHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY--GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKG----QLVPDEIVVTMVKE 154 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~--~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~l~~ 154 (284)
...+.+|+|+|+|||||||+++.|++++ ++.++|.|.+ +..... .......+.... ...........+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~-R~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~ 105 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF-KQQHPN---FDELVKLYEKDVVKHVTPYSNRMTEAIISR 105 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH-HTTSTT---HHHHHHHHGGGCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh-HHhchh---hHHHHHHccchhhhhhhHHHHHHHHHHHHH
Confidence 3457899999999999999999999998 7888986554 321110 000011110000 00001112223333
Q ss_pred HhcCCCCCCCeEEEeCcccCHHHHHHH----HHcCCCCcEEEEEEcCHHHH----HHHHHcC
Q 023307 155 RLSQPDSQENGWLLDGYPRSLSQATAL----KKYGFQPDLFILLEVPEDTL----VERVVGR 208 (284)
Q Consensus 155 ~i~~~~~~~~g~IlDg~p~~~~q~~~l----~~~~~~~~~vI~L~~~~e~~----~~Rl~~R 208 (284)
.+. .+..+|+|+......+...+ ...+ ....+++|.+|++++ .+|+..|
T Consensus 106 ~l~----~g~~vIld~~~~~~~~~~~~~~~~~~~g-~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 106 LSD----QGYNLVIEGTGRTTDVPIQTATMLQAKG-YETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp HHH----HTCCEEECCCCCCSHHHHHHHHHHHTTT-CEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred HHh----cCCeEEEECCCCCHHHHHHHHHHHHhCC-CcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 333 26789999977765533332 2223 344579999999999 7888665
No 81
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.17 E-value=7.8e-11 Score=109.74 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=73.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
...+.+|+|+|+|||||||+|+.|++.+++.+++.|++- . ...+...+...+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~----------------~~~~~~~~~~~l~~-- 308 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG--------S----------------WQRCVSSCQAALRQ-- 308 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC--------S----------------HHHHHHHHHHHHHT--
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH--------H----------------HHHHHHHHHHHHhc--
Confidence 345679999999999999999999999999999987751 0 11123334444443
Q ss_pred CCCCeEEEeCcccCHHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 161 SQENGWLLDGYPRSLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+..+|+|+......+...+.. .......+|||+++.+++++|+..|.
T Consensus 309 --g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~ 358 (416)
T 3zvl_A 309 --GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE 358 (416)
T ss_dssp --TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred --CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhc
Confidence 678999987666554444322 22245679999999999999999885
No 82
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.16 E-value=1.2e-12 Score=114.32 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-CCcEee
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-GLVHIA 114 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-~~~~is 114 (284)
.++++|+|.|++||||||+++.|++.+ ++.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 466899999999999999999999998 666653
No 83
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.13 E-value=1.2e-09 Score=92.03 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=64.9
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhC------CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHH---HH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYG------LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIV---VT 150 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~------~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~ 150 (284)
....+++|+|+|++||||||+++.|++.++ +.+++.| .++..+........... ...+ ..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d-~~r~~l~~~~~~~~~~r----------~~~~~~~~~ 89 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD-NIRFGLNKDLGFSEADR----------NENIRRIAE 89 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH-HHTTTTTTTCCSSHHHH----------HHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh-HHhhhhccccCCCHHHH----------HHHHHHHHH
Confidence 345678999999999999999999999886 7777733 33332211100000000 0111 11
Q ss_pred HHHHHhcCCCCCCCeEEEeCcccC----HHHHHHHHH------cCCCCcEEEEEEcCHHHHHHHH
Q 023307 151 MVKERLSQPDSQENGWLLDGYPRS----LSQATALKK------YGFQPDLFILLEVPEDTLVERV 205 (284)
Q Consensus 151 ~l~~~i~~~~~~~~g~IlDg~p~~----~~q~~~l~~------~~~~~~~vI~L~~~~e~~~~Rl 205 (284)
.+...+. .+..+|+| +... .+.+..+.. ....++++|||++|.+++.+|+
T Consensus 90 ~~~~~l~----~g~~VI~d-~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 90 VAKLFAD----SNSIAITS-FISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHHHH----TTCEEEEE-CCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHHHH----CCCEEEEe-cCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 1222232 25678888 4321 233334433 1125789999999999999994
No 84
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.12 E-value=9.9e-10 Score=94.35 Aligned_cols=42 Identities=17% Similarity=0.331 Sum_probs=37.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI 123 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~ 123 (284)
+++++|+|.|++||||||+++.|++.+|+.+++.|.+++...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~ 48 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIAT 48 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHH
Confidence 356799999999999999999999999999999999987753
No 85
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.10 E-value=2.6e-10 Score=99.17 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHH-HHH--cCCcchHHHHH----HH-----HcCCCcChHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRA-EIA--AGSENGKRAKE----HM-----EKGQLVPDEIVVTMV 152 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~-~~~--~~~~~~~~~~~----~~-----~~g~~~~~~~~~~~l 152 (284)
++|+|+|++||||||+|+.|++++++.+++.|++... .+. ...+....... ++ .++ ......+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~f~~~~ 80 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEG-ILDAESAHRRL 80 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGC-SCCHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccc-cccHHHHHHHH
Confidence 5899999999999999999999999999998886421 010 00110000000 00 000 12334455555
Q ss_pred HHHhcCCCCCCCeEEEeCcccCHHHHHHHHHc----CCCCcEEEEEEcCH-HHHHHHHHcCC
Q 023307 153 KERLSQPDSQENGWLLDGYPRSLSQATALKKY----GFQPDLFILLEVPE-DTLVERVVGRR 209 (284)
Q Consensus 153 ~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~----~~~~~~vI~L~~~~-e~~~~Rl~~R~ 209 (284)
...+ +....+..+|++|... ..++.+... ......++||+++. +++.+|+.+|.
T Consensus 81 ~~~i-~~~~~g~~vIl~gg~~--~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 81 IFEV-DWRKSEEGLILEGGSI--SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHHH-HTTTTSSEEEEEECCH--HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHH-HHHhCCCCeEEeccHH--HHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 5556 5444567788886321 233333322 11223789999997 99999999885
No 86
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.08 E-value=2.6e-09 Score=89.20 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=63.7
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCc--EeehhHHHHHHHHcCCcchH-HHHHHHHcCCCcChHHHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAGDLLRAEIAAGSENGK-RAKEHMEKGQLVPDEIVVTMVK 153 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~---~~~--~is~ddlir~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~l~ 153 (284)
....+.+|+|+|++||||||+++.|++.+ |.. +++.+++.. .+..+..... .....+ .. ...+.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~-~~~~~~~~~~~~~~~~~--------~~-~~~~~ 90 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH-GLNRDLSFKAEDRAENI--------RR-VGEVA 90 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT-TTTTTCCSSHHHHHHHH--------HH-HHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh-HhhcccCcChHHHHHHH--------HH-HHHHH
Confidence 34567899999999999999999999988 666 787555432 1111110100 000000 00 01111
Q ss_pred HHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCC-CCcEEEEEEcCHHHHHHHH
Q 023307 154 ERLSQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLEVPEDTLVERV 205 (284)
Q Consensus 154 ~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~-~~~~vI~L~~~~e~~~~Rl 205 (284)
..+.. .+..+|.++........+.+..... ....+|||+++.+++.+|+
T Consensus 91 ~~~~~---~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 91 KLFAD---AGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHHH---TTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHC
T ss_pred HHHHh---CCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhc
Confidence 11211 2456676654333344444444321 2446799999999999997
No 87
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.08 E-value=1.6e-11 Score=103.24 Aligned_cols=123 Identities=23% Similarity=0.261 Sum_probs=64.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcc-hHHHHHHHHc--CCCcChHHHHHHH--------H
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSEN-GKRAKEHMEK--GQLVPDEIVVTMV--------K 153 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~-~~~~~~~~~~--g~~~~~~~~~~~l--------~ 153 (284)
++|+|+|++||||||+++.|++.++...+++.. ++. ...+.+. +..++..+.. +....+.....++ .
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~-~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 78 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVAT-LAF-PRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAV 78 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEE-EES-SEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-Eee-cCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhH
Confidence 379999999999999999999998532221100 000 0000111 2222222211 1000011111111 1
Q ss_pred HHhcCCCCCCCeEEEeCcccCH--HH------------HHHHHHc-----C-CCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 154 ERLSQPDSQENGWLLDGYPRSL--SQ------------ATALKKY-----G-FQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 154 ~~i~~~~~~~~g~IlDg~p~~~--~q------------~~~l~~~-----~-~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+.+......+..+|+|+++... .+ .+++... + ..++.+|||+++++++.+|+..|+
T Consensus 79 ~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~ 154 (214)
T 1gtv_A 79 HTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRA 154 (214)
T ss_dssp HHHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHccc
Confidence 1222222235678999976432 11 1222221 2 268999999999999999999885
No 88
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.04 E-value=4.1e-09 Score=86.74 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=63.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChH---HHHH--H
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDE---IVVT--M 151 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~--~ 151 (284)
+++.+|+|+|++||||||+++.|++.++ +.+++.|. ++..+..+. .+.+.+ .+.. .
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~-~~~~~~~~~-------------~~~~~~r~~~~~~~~~ 76 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW-ARTTVSEGA-------------GFTREERLRHLKRIAW 76 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH-HHTTTTTTC-------------CCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH-HHHHHhhcc-------------CCChhhHHHHHHHHHH
Confidence 4568999999999999999999999874 34566443 343221110 011111 1111 1
Q ss_pred HHHHhcCCCCCCCeEEEeCcccCH---HHHHHHHHcCCCCcEEEEEEcCHHHHHHHHH
Q 023307 152 VKERLSQPDSQENGWLLDGYPRSL---SQATALKKYGFQPDLFILLEVPEDTLVERVV 206 (284)
Q Consensus 152 l~~~i~~~~~~~~g~IlDg~p~~~---~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 206 (284)
+...+. ..+..+|+|++.... +.+..+......++.+|||++|.+++.+|+.
T Consensus 77 ~~~~~~---~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~ 131 (186)
T 2yvu_A 77 IARLLA---RNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDP 131 (186)
T ss_dssp HHHHHH---TTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCH
T ss_pred HHHHHH---hCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhh
Confidence 111122 224566778754332 2233332222357899999999999999974
No 89
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.01 E-value=6.8e-09 Score=100.80 Aligned_cols=113 Identities=14% Similarity=0.159 Sum_probs=66.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehh-HHHHHHHHcCCcchHHHH-HHHHcCCCcChHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAG-DLLRAEIAAGSENGKRAK-EHMEKGQLVPDEIVVTMVKERL 156 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~d-dlir~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~l~~~i 156 (284)
.++++|+|+|++||||||+++.|++++ |+.++++| |.++..+..+........ +.+ ..+.+.+...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~--------r~i~eva~~~l 121 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENV--------RRIAEVAKLFA 121 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHH--------HHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHH--------HHHHHHHHHHH
Confidence 367899999999999999999999999 88887764 555442221111110000 000 00111111122
Q ss_pred cCCCCCCCeEEEeCc-cc--CHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHH
Q 023307 157 SQPDSQENGWLLDGY-PR--SLSQATALKKYGFQPDLFILLEVPEDTLVERVV 206 (284)
Q Consensus 157 ~~~~~~~~g~IlDg~-p~--~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~ 206 (284)
. .+..+|.|.. +. ..+.+..+......++++|||+++.+++.+|+.
T Consensus 122 ~----~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 122 D----AGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp H----TTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred h----CCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc
Confidence 1 2445555532 11 134444444444457899999999999999975
No 90
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.01 E-value=1.1e-09 Score=89.67 Aligned_cols=112 Identities=14% Similarity=0.194 Sum_probs=61.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehh-HHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHH--HHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAG-DLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMV--KER 155 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~d-dlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l--~~~ 155 (284)
.++.+|+|+|++||||||+++.|++.+ |++++.++ +.++..+... .+....+ .+..+.+.. ...
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~ 72 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKN--LGFSPED--------REENVRRIAEVAKL 72 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTT--CCSSHHH--------HHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhc--ccccccc--------HHHHHHHHHHHHHH
Confidence 356789999999999999999999988 88777554 3333211110 0000000 011111111 111
Q ss_pred hcCCCCCCCeEEEeCccc-C---HHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHc
Q 023307 156 LSQPDSQENGWLLDGYPR-S---LSQATALKKYGFQPDLFILLEVPEDTLVERVVG 207 (284)
Q Consensus 156 i~~~~~~~~g~IlDg~p~-~---~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~ 207 (284)
+.. .+ .+++.++.. . ......+......++.+|||++|++++.+|+.+
T Consensus 73 ~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~ 124 (179)
T 2pez_A 73 FAD---AG-LVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 124 (179)
T ss_dssp HHH---TT-CEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTT
T ss_pred HHH---CC-CEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhh
Confidence 211 12 344444321 2 223233322233688999999999999999754
No 91
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.99 E-value=2.6e-11 Score=100.80 Aligned_cols=136 Identities=19% Similarity=0.278 Sum_probs=81.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhC-CcEeehhHHHHHH---HHcCCcc----hHHHHHHHHcCCCcChHH--------HHH
Q 023307 87 IMISGAPASGKGTQCELIKEKYG-LVHIAAGDLLRAE---IAAGSEN----GKRAKEHMEKGQLVPDEI--------VVT 150 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~-~~~is~ddlir~~---~~~~~~~----~~~~~~~~~~g~~~~~~~--------~~~ 150 (284)
|+|+||+|+||+|+++.|.+.+. ...+++...-|.. ..+|.+. ...++..+.+|.++..+. ...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~ 83 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVA 83 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecc
Confidence 89999999999999999988763 2223222221211 0111111 246666677776654321 122
Q ss_pred HHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCceeeccCCCCCchHH
Q 023307 151 MVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKIYHVKYSPPETDEI 230 (284)
Q Consensus 151 ~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~ 230 (284)
.+...+.+ ++.+|+|..+....+++... ...+..++++..+.+++.+|+.+|+
T Consensus 84 ~v~~~l~~----g~~vil~id~~g~~~~k~~~--~~~~~~Ifi~pps~e~L~~RL~~Rg--------------------- 136 (186)
T 1ex7_A 84 SVKQVSKS----GKTCILDIDMQGVKSVKAIP--ELNARFLFIAPPSVEDLKKRLEGRG--------------------- 136 (186)
T ss_dssp HHHHHHHH----TSEEEEECCHHHHHHHHTCG--GGCCEEEEEECSCHHHHHHHHHHHC---------------------
T ss_pred eeeehhhC----CCEEEecCCHHHHHHHHHhc--ccCceEEEEeCCCHHHHHHHHHhcC---------------------
Confidence 23333333 67899998655444443221 1234455556667789999999886
Q ss_pred hhhhcccCCCCHHHHHHHHHHHHHhHH
Q 023307 231 AARLTKRFDDTEEKVKLRLKTHHHNVE 257 (284)
Q Consensus 231 ~~~l~~r~~~~~~~i~~rl~~~~~~~~ 257 (284)
.++.+.+++||.....+..
T Consensus 137 --------~e~~e~i~~Rl~~a~~e~~ 155 (186)
T 1ex7_A 137 --------TETEESINKRLSAAQAELA 155 (186)
T ss_dssp --------CSCHHHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHh
Confidence 3668899999987766553
No 92
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.98 E-value=5.5e-10 Score=96.04 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-CCcE
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY-GLVH 112 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~-~~~~ 112 (284)
++++|+|.|++||||||+++.|++.+ ++.+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 46899999999999999999999998 5543
No 93
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.96 E-value=5.8e-10 Score=106.64 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=67.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCC-----cEeehhHHHHHHHHcCCcchHHHHHHHHc-CC---CcChHHHHHHH-
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEK-GQ---LVPDEIVVTMV- 152 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~-----~~is~ddlir~~~~~~~~~~~~~~~~~~~-g~---~~~~~~~~~~l- 152 (284)
.+.+|+++|.|||||||+|+.|++++++ .+++.|++.+..... .... +++.. +. ...+......+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~-~~~~----~~f~~~~~~~~~~re~~~~~~l~ 108 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQ-YSSY----NFFRPDNEEAMKVRKQCALAALR 108 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSC-CCCG----GGGCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccC-Cccc----cccCcccHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999843 346778866554322 1111 11110 00 00001111111
Q ss_pred --HHHhcCCCCCCCeEEEeCcccCHHHHHHHH----HcCCCCcEEEEEEcC-HHHHHHHHHcCC
Q 023307 153 --KERLSQPDSQENGWLLDGYPRSLSQATALK----KYGFQPDLFILLEVP-EDTLVERVVGRR 209 (284)
Q Consensus 153 --~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~----~~~~~~~~vI~L~~~-~e~~~~Rl~~R~ 209 (284)
...+.. ..+..+|+|+......+.+.+. +.+ ...++|++.|+ .+.+.+|+..|.
T Consensus 109 ~~~~~L~~--~~g~~VIvDat~~~~~~R~~~~~~a~~~g-~~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 109 DVKSYLAK--EGGQIAVFDATNTTRERRHMILHFAKEND-FKAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHHHHHH--SCCCEEEEESCCCSHHHHHHHHHHHHHHT-CEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHHHHHHh--cCCceEEecCCCCCHHHHHHHHHHHHHcC-CeEEEEEEeCChHHHHHHHHHhhh
Confidence 122211 2367899999766655544432 223 23456777777 677788887664
No 94
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.94 E-value=1.4e-09 Score=93.01 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.++.+|+|.|+.||||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45689999999999999999999876
No 95
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.92 E-value=3.1e-09 Score=88.45 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=61.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHH---HcCCc----chHHHHHHHHcCCCcChH--------H
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEI---AAGSE----NGKRAKEHMEKGQLVPDE--------I 147 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~---~~~~~----~~~~~~~~~~~g~~~~~~--------~ 147 (284)
.+.+|+|+||+||||||+++.|+..+.-.+++..++.+... ..+.. ....+......+.+.... .
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 45789999999999999999999876433332211111000 00000 001111222111110000 0
Q ss_pred HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 148 VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 148 ~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
....+.+.+.. +..+|+|+.+....++. .....+..++++..+.+++.+|+.+|+
T Consensus 86 ~~~~i~~~l~~----g~~vi~d~~~~~~~~~~---~~~~~~~~v~~~~~~~e~l~~Rl~~R~ 140 (205)
T 3tr0_A 86 EKDWVLRQLKA----GRDVLLEIDWQGARQIR---ELFPPALSIFILPPSIEALRERLIKRR 140 (205)
T ss_dssp EHHHHHHHHHT----TCEEEEECCHHHHHHHH---HHCTTCEEEEEECSCHHHHHHHHHTCT
T ss_pred hHHHHHHHHHc----CCeEEEEECHHHHHHHH---HhCCCcEEEEEECcCHHHHHHHHHHhC
Confidence 01223333433 57889998655444433 332334444445557999999999986
No 96
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.92 E-value=2e-09 Score=90.60 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
..+.+|+|+||+||||||+++.|++.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3467899999999999999999998874
No 97
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.86 E-value=1.3e-10 Score=97.06 Aligned_cols=27 Identities=37% Similarity=0.407 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+.+.+|+|+|++||||||+++.|++.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 346789999999999999999999876
No 98
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.81 E-value=1.8e-08 Score=90.81 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
++++.|+|.|+.||||||+++.|++.++.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34689999999999999999999998854
No 99
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.80 E-value=2.3e-09 Score=95.04 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLR 120 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir 120 (284)
++++|.|+|++||||||+|+.|++.++ +.++++|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 457899999999999999999999887 78999998875
No 100
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.78 E-value=5.4e-08 Score=93.50 Aligned_cols=113 Identities=14% Similarity=0.182 Sum_probs=66.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-----cEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL-----VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERL 156 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~-----~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i 156 (284)
..+.+|+|+|++||||||+|+.|++.++. .+++.| .++..+..+..+...-+... + ..+...+...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D-~ir~~l~~~~~f~~~er~~~-----l--~~i~~~~~~~l 441 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD-VVRTHLSRGLGFSKEDRITN-----I--LRVGFVASEIV 441 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH-HHHHHTCTTCCSSHHHHHHH-----H--HHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch-HhhhhhcccccccHHHHHHH-----H--HHHHHHHHHHH
Confidence 34689999999999999999999998863 677744 45554322111111100000 0 01111222222
Q ss_pred cCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCc-EEEEEEcCHHHHHHHHH
Q 023307 157 SQPDSQENGWLLDGYPRSLSQATALKKYGFQPD-LFILLEVPEDTLVERVV 206 (284)
Q Consensus 157 ~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~-~vI~L~~~~e~~~~Rl~ 206 (284)
. .+.++|+|+..........+......++ ++|||+++.+++.+|+.
T Consensus 442 ~----~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 442 K----HNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp H----TTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC
T ss_pred h----CCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh
Confidence 2 3678999974333333333333222246 89999999999999985
No 101
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.76 E-value=1.4e-08 Score=83.70 Aligned_cols=116 Identities=17% Similarity=0.104 Sum_probs=63.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCC-cEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCCC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGL-VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQE 163 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~-~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~~ 163 (284)
.+|+|+|++||||||+++.|++.++. .+++.+++.... ..+. ..... .......+.+.+...+......+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~-~~~~-~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMV-VGGY-RPPWE-------SDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTC-CTTC-CCGGG-------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhh-cccc-ccCcc-------chhHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999988765 778766554321 0000 00000 00001111222211111111124
Q ss_pred CeEEEeCcccCHHHHHHHHH----cCCC-CcEEEEEEcCHHHHHHHHHcCCC
Q 023307 164 NGWLLDGYPRSLSQATALKK----YGFQ-PDLFILLEVPEDTLVERVVGRRL 210 (284)
Q Consensus 164 ~g~IlDg~p~~~~q~~~l~~----~~~~-~~~vI~L~~~~e~~~~Rl~~R~~ 210 (284)
..+|+|++- .....+.+.. .+.. ...+++|.++.+++.+|...|..
T Consensus 74 ~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~ 124 (189)
T 2bdt_A 74 NDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124 (189)
T ss_dssp CEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC
T ss_pred CcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccc
Confidence 578999842 2222222221 1222 34578899999999999998853
No 102
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.72 E-value=6.4e-08 Score=80.78 Aligned_cols=117 Identities=19% Similarity=0.174 Sum_probs=54.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--cEeehhHHHHHHH---HcCCcchHHHHHHHHcCCCcChHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRAEI---AAGSENGKRAKEHMEKGQLVPDEIVVTMV 152 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~---~~--~~is~ddlir~~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~l 152 (284)
...+.+|+|+|++||||||+++.|+..+ +. .+++.|....... ..+...+. .+. .+. +..+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~---~~~-~~~-~d~~~l~~~v 93 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF---EYY-YLQ-WDVEWLTHQL 93 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHH---HHH-HTS-SCHHHHHHHT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCcc---CCC-ccc-cCHHHHHHHH
Confidence 3566899999999999999999999865 43 3444455433211 11111111 111 111 1112222221
Q ss_pred HHHhcC---------------------CCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcC
Q 023307 153 KERLSQ---------------------PDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGR 208 (284)
Q Consensus 153 ~~~i~~---------------------~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R 208 (284)
...+.. ....+..+|+||....... +. ..+|.+|||++|.+++++|+.+|
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~~~~---~~---~~~d~~i~v~~~~~~~~~R~~~R 164 (201)
T 1rz3_A 94 FRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKE---WR---PFFDFVVYLDCPREIRFARENDQ 164 (201)
T ss_dssp GGGTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTTSTT---TG---GGCSEEEEECCC-----------
T ss_pred HHHHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhccHH---HH---hhcCEEEEEeCCHHHHHHHHhcC
Confidence 111100 0122467899984321111 11 13689999999999999999988
No 103
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.71 E-value=6.7e-08 Score=80.83 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=72.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC---CcEeehhHHHHHHHHc--CCcchHHHHHHHHcCCCcCh---------HHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAA--GSENGKRAKEHMEKGQLVPD---------EIV 148 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~---~~~is~ddlir~~~~~--~~~~~~~~~~~~~~g~~~~~---------~~~ 148 (284)
.+++|+|+|.|||||+|+|+.|.+.+| +.+++++|.+++.... +.+.... +..+.+-+. +.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~----l~~~~ykE~~R~~m~~~g~~~ 85 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRL----LDTSTYKEAFRKDMIRWGEEK 85 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-----------CCSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhh----cchhhhHHHHHHHHHHHHHHH
Confidence 347999999999999999999988885 7789999999964332 2111111 000000000 000
Q ss_pred HH----H-HHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHH
Q 023307 149 VT----M-VKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERV 205 (284)
Q Consensus 149 ~~----~-l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 205 (284)
.. . +...+... ....|||||. |...++++|.+.+.....+|.+.+++++..+|.
T Consensus 86 R~~d~~~~~~~~~~~~--~~~~vII~dv-R~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 86 RQADPGFFCRKIVEGI--SQPIWLVSDT-RRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp HHHCTTTTHHHHSBTC--CCSEEEECCC-CSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred HhcCchHHHHHHHHhc--CCCcEEEeCC-CCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 00 0 01112222 2357999987 778888888875333456899999999999994
No 104
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.70 E-value=6.1e-09 Score=85.95 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+|+|+||+||||||++++|+..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999999765
No 105
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.68 E-value=8.3e-08 Score=78.88 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=65.4
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCC--cEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhc
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGL--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~~--~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~ 157 (284)
....+.+|+|+|++||||||+++.|+..++. .+++.+++.... ..+...+...+.. . +...+.+.+.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~-~-----~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYI-KHGRIDPWLPQSH-Q-----QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTC-CSSCCCTTSSSHH-H-----HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhh-hcccccCCccchh-h-----hhHHHHHHHHHHHH
Confidence 3455689999999999999999999987644 467766654321 1110000000000 0 01112222211110
Q ss_pred CCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 158 QPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 158 ~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
.....+..+++|+..... ..+.+...+ ....++++.++.+++++|+..|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~-~l~~~~~~~-~~~~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 78 RYAKEGYFVILDGVVRPD-WLPAFTALA-RPLHYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp HHHHTSCEEEECSCCCTT-TTHHHHTTC-SCEEEEEEECCHHHHHHHHHTTC
T ss_pred HHhccCCeEEEeccCcHH-HHHHHHhcC-CCeEEEEecCCHHHHHHHHHhcC
Confidence 001124567888754321 222233212 23367999999999999999885
No 106
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.68 E-value=1.8e-08 Score=90.76 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
.++++|+|+||+||||||++..|+++++..+||+|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3457899999999999999999999999999998876
No 107
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.58 E-value=1.1e-06 Score=80.07 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
..++++|+|.|+.||||||+++.|++.++
T Consensus 46 ~~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 46 MPTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CCEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45668999999999999999999998874
No 108
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.58 E-value=3.9e-07 Score=87.95 Aligned_cols=111 Identities=12% Similarity=0.120 Sum_probs=61.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC----C--cEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG----L--VHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKER 155 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~----~--~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~ 155 (284)
.++++|+|+|++||||||+|+.|+++++ . .+++ +|.++..+..+......-+.. + -..+...+...
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD-~D~ir~~l~~~~~f~~~er~~--~-----i~ri~~v~~~~ 465 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL-GDTVRHELSSELGFTREDRHT--N-----IQRIAFVATEL 465 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE-HHHHHHHTCTTCCCSHHHHHH--H-----HHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC-cHHHHHHhccccCCChhHHHH--H-----HHHHHHHHHHH
Confidence 4568999999999999999999999976 3 4555 444554322111111000000 0 00011122222
Q ss_pred hcCCCCCCCeEEEeCccc---CHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHH
Q 023307 156 LSQPDSQENGWLLDGYPR---SLSQATALKKYGFQPDLFILLEVPEDTLVERV 205 (284)
Q Consensus 156 i~~~~~~~~g~IlDg~p~---~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl 205 (284)
+. .+..+|.|.... .++.+..+.... ...++|||+++.+++.+|.
T Consensus 466 ~~----~g~~VI~~~is~~~~~R~~~r~l~~~~-g~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 466 TR----AGAAVIAAPIAPYEESRKFARDAVSQA-GSFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp HH----TTCEEEEECCCCCHHHHHHHHHHHHTT-SEEEEEEECCCHHHHHHHC
T ss_pred Hh----CCCEEEEEcCCCcHHHHHHHHHHHHhc-CCeEEEEEeCCHHHHHHHh
Confidence 22 255677774322 223333333221 1468999999999999995
No 109
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.54 E-value=3.5e-07 Score=76.45 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC--CcEeehhHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAGDLL 119 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~--~~~is~ddli 119 (284)
..+.+|.|+|++||||||+++.|+..++ +.+++.|..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 4567999999999999999999999988 8888877654
No 110
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.48 E-value=4.5e-07 Score=77.09 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=17.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH-HHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIK-EKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La-~~~ 108 (284)
..+.+|+|+||+||||||+++.|+ ..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445789999999999999999999 765
No 111
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.47 E-value=2.8e-07 Score=83.19 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCCHHHHH-HHHHHHhCC
Q 023307 82 VEPLKIMISGAPASGKGTQC-ELIKEKYGL 110 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla-~~La~~~~~ 110 (284)
.++++|+|.|+.||||||++ +.|++.++.
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 45689999999999999999 999998764
No 112
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.45 E-value=3e-07 Score=86.68 Aligned_cols=120 Identities=14% Similarity=0.170 Sum_probs=64.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCC----cChHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQL----VPDEIVVTMV 152 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~~l 152 (284)
..+.+|+++|.|||||||+++.|++.++ ...++.+++.+.. ....... +++..... ..+......+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~-~g~~~~~----~ifd~~g~~~~r~re~~~~~~l 111 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDM-VKTYKSF----EFFLPDNEEGLKIRKQCALAAL 111 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HCSCCCG----GGGCTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhh-ccCCCcc----cccCCCCHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999875 3455666654442 2110000 00110000 0001111112
Q ss_pred ---HHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCC-CCcEEEEEE---cCHHHHHHHHHcC
Q 023307 153 ---KERLSQPDSQENGWLLDGYPRSLSQATALKKYGF-QPDLFILLE---VPEDTLVERVVGR 208 (284)
Q Consensus 153 ---~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~-~~~~vI~L~---~~~e~~~~Rl~~R 208 (284)
...+.. ..+.++|+|+......+.+.+..... ....+++|+ .+++.+.+|+..+
T Consensus 112 ~~~~~~l~~--~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~ 172 (469)
T 1bif_A 112 NDVRKFLSE--EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQV 172 (469)
T ss_dssp HHHHHHHHT--TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHh
Confidence 233322 23568999997666655544422100 012356666 5577888888754
No 113
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.43 E-value=3e-06 Score=75.45 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CcEeehhHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDL 118 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~-------~~~is~ddl 118 (284)
..+.+|.|+|++||||||+++.|+..++ +.++++|+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5678999999999999999999998776 556666654
No 114
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.41 E-value=5.9e-06 Score=74.27 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
++.+.|+|.|+.||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467999999999999999999998874
No 115
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.40 E-value=4.1e-07 Score=81.59 Aligned_cols=38 Identities=26% Similarity=0.348 Sum_probs=31.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CcEeehhHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHIAAGDL 118 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~-------~~~is~ddl 118 (284)
...+.+|.|.|++||||||+++.|+..++ +.++++|+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 34567999999999999999999998775 455777664
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.36 E-value=1.3e-06 Score=73.09 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGDL 118 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~ddl 118 (284)
..+.+|.|.|++||||||+++.|+..+. ..++..|+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 4568999999999999999999998874 556666553
No 117
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.34 E-value=5.5e-07 Score=79.75 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=88.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC---CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQ 158 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~---~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~ 158 (284)
..+.+|+|.|..||||+|+.+.|.+.++ +.++.+. .+.+... .+. .+......
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~----------~Pt~eE~----~~~----------yl~R~~~~ 139 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALT----------KPTETER----GQW----------YFQRYVAT 139 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECC----------SCCHHHH----TSC----------TTHHHHTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeC----------CcChHHH----hch----------HHHHHHHh
Confidence 5688999999999999999999999884 4444321 1111111 111 12233444
Q ss_pred CCCCCCeEEEeCcc--c----------CH-------HHHHHHHH----cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCC
Q 023307 159 PDSQENGWLLDGYP--R----------SL-------SQATALKK----YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (284)
Q Consensus 159 ~~~~~~g~IlDg~p--~----------~~-------~q~~~l~~----~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (284)
....|..+|+|.+- + .. .++..|+. .| .+++.|||+++.++..+|+..|..++..
T Consensus 140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G-~~~lKf~L~Is~eeq~kR~~~R~~dp~k- 217 (304)
T 3czq_A 140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEG-IHLFKFWINIGREMQLKRFHDRRHDPLK- 217 (304)
T ss_dssp CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEEECCHHHHHHHHHHHHHCTTT-
T ss_pred cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCC-CeeEEEEEECCHHHHHHHHHHhhcCccc-
Confidence 44567889999521 1 11 22222221 34 7899999999999999999887432211
Q ss_pred ceeeccCCCCCchHHhhhhcccCCCCHHHH--HHHHHHHHHhHHHHHHHhh---ccceEEeccCc
Q 023307 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKV--KLRLKTHHHNVEAVLSLYE---DVTVEVCDMIS 275 (284)
Q Consensus 216 ~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i--~~rl~~~~~~~~~~~~~y~---~~~i~ID~~~~ 275 (284)
... -+...+ .+++..|.+.+..++..-. ..+.+|||+..
T Consensus 218 -------------------~Wk--~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk 261 (304)
T 3czq_A 218 -------------------IWK--LSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDK 261 (304)
T ss_dssp -------------------GGG--CCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSH
T ss_pred -------------------ccC--CCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCc
Confidence 001 112222 2456777777777776632 34888999763
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.28 E-value=1.5e-05 Score=67.58 Aligned_cols=29 Identities=10% Similarity=0.166 Sum_probs=24.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
.+.+.+++|+||+||||||+.+.|+..+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34567999999999999999999998764
No 119
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.15 E-value=3e-05 Score=62.75 Aligned_cols=113 Identities=16% Similarity=0.135 Sum_probs=63.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
..+.+++|+|++||||||+++.+. .+..+++.| .++..+..... ...+.... .+.........+..
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d-~~~g~~~~~~~-~~~~~~~~-------~~~~~~~~~~~~~~--- 72 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD-FCRGLMSDDEN-DQTVTGAA-------FDVLHYIVSKRLQL--- 72 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH-HHHHHHCSSTT-CGGGHHHH-------HHHHHHHHHHHHHT---
T ss_pred CCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH-HHHHHhcCccc-chhhHHHH-------HHHHHHHHHHHHhC---
Confidence 456799999999999999999864 355666643 44443322110 00000000 01111112222222
Q ss_pred CCCeEEEeCcccC---HHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 162 QENGWLLDGYPRS---LSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 162 ~~~g~IlDg~p~~---~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
+...++|..... ..|.-.+.......-.+++||-|...+-.|...|.
T Consensus 73 -g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 73 -GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp -TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred -CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 455677763332 23333444443445578999999999999999884
No 120
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.12 E-value=8.8e-06 Score=69.78 Aligned_cols=32 Identities=44% Similarity=0.620 Sum_probs=27.2
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
....+.+|.|+|++||||||+++.|+..+|..
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34566899999999999999999999988865
No 121
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.11 E-value=9.3e-07 Score=72.32 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
.+.+|+|+||+||||||+++.|+..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998763
No 122
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.11 E-value=3.2e-06 Score=81.18 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC------CcEeehhHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG------LVHIAAGDLL 119 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~------~~~is~ddli 119 (284)
.++.+|+|+|++||||||+++.|+..++ +.+++.|++.
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 4678999999999999999999999884 3457755553
No 123
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.04 E-value=4.4e-05 Score=63.31 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+..++|+||+||||||+.+.|...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998865
No 124
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.02 E-value=2.6e-06 Score=76.26 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
+++|+|+||+||||||+++.|+++++..++++|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 35899999999999999999999999999998765
No 125
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.96 E-value=3.5e-06 Score=75.95 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
++|+|+||+||||||+|+.|++.++..++++|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 5899999999999999999999999999998876
No 126
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.93 E-value=1.3e-05 Score=66.86 Aligned_cols=29 Identities=10% Similarity=0.125 Sum_probs=25.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
..++.+|+|+||+||||||+++.|.+.+.
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44667899999999999999999998875
No 127
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.92 E-value=9.1e-06 Score=69.87 Aligned_cols=40 Identities=28% Similarity=0.442 Sum_probs=36.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIA 124 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~ 124 (284)
++|.|+|++||||||+++.|.+.+|++++..++.+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 6899999999999999999999899999999988877654
No 128
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.87 E-value=6.6e-06 Score=73.28 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
++++|+|+||+||||||++..|+++++..+|+.|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 467899999999999999999999999988887765
No 129
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.87 E-value=9.2e-06 Score=72.23 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=33.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
...+++|+|+||+||||||++..|+++++..+++.|.+
T Consensus 7 ~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 34567899999999999999999999999988887653
No 130
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.84 E-value=2.8e-05 Score=73.59 Aligned_cols=107 Identities=14% Similarity=0.110 Sum_probs=62.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC---CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhc
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~---~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~ 157 (284)
...+.+|+|.|..||||+|+.+.|.+.++ +.++.+.. +.... . +.. .+.....
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~----------Pt~~E----~--~~~--------yl~R~~~ 95 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLR----------PSDEE----L--ERP--------PQWRFWR 95 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSS----------CCHHH----H--TSC--------TTHHHHH
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhh----c--cCC--------hhhhHHH
Confidence 46789999999999999999999999884 44443211 11110 0 110 1122233
Q ss_pred CCCCCCCeEEEeCcc------------cC-------HHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCC
Q 023307 158 QPDSQENGWLLDGYP------------RS-------LSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLD 211 (284)
Q Consensus 158 ~~~~~~~g~IlDg~p------------~~-------~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~ 211 (284)
.....|..+|+|.+- .. +.++..|+. ....+++.+||+++.++..+|+..|..+
T Consensus 96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~~~ 171 (500)
T 3czp_A 96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKD 171 (500)
T ss_dssp HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC------
T ss_pred hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHhcC
Confidence 344457778888521 11 223333322 3446889999999999999999998654
No 131
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.82 E-value=3e-05 Score=73.33 Aligned_cols=150 Identities=12% Similarity=0.051 Sum_probs=88.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhc
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY---GLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLS 157 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~---~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~ 157 (284)
...+.+|+|.|..||||+|+.+.|.+.+ |+.++.+.. +.... . +. ..+.....
T Consensus 297 ~~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~----------Pt~~E----~--~~--------~yl~R~~~ 352 (500)
T 3czp_A 297 RQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAA----------PTEEE----R--AQ--------PYLWRFWR 352 (500)
T ss_dssp GGCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCS----------CCHHH----H--TS--------CTTHHHHT
T ss_pred CCCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCC----------CChhh----h--cc--------hHHHHHHH
Confidence 3567899999999999999999999887 455554211 11110 0 11 12234555
Q ss_pred CCCCCCCeEEEeCcc--c----------CH-------HHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCC
Q 023307 158 QPDSQENGWLLDGYP--R----------SL-------SQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTG 215 (284)
Q Consensus 158 ~~~~~~~g~IlDg~p--~----------~~-------~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g 215 (284)
.....|..+|+|.+- + .. .++..|+. ....+++.+||+++.++..+|+..|..++...
T Consensus 353 ~lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~~p~k~ 432 (500)
T 3czp_A 353 HIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKR 432 (500)
T ss_dssp TCCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHHHSSCTT
T ss_pred hCCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHhcCCccc
Confidence 566668889999621 1 11 22333322 22357899999999999999999985433210
Q ss_pred ceeeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc---cceEEeccC
Q 023307 216 KIYHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED---VTVEVCDMI 274 (284)
Q Consensus 216 ~~~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~---~~i~ID~~~ 274 (284)
+.+ ......-.+++..|.+.++..+..-.. -+.+|+++.
T Consensus 433 ----Wk~----------------s~~D~~~~~~w~~y~~a~~~~l~~T~t~~APW~vI~a~d 474 (500)
T 3czp_A 433 ----YKI----------------TEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEAND 474 (500)
T ss_dssp ----SCC----------------CSSTTTGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred ----CCC----------------CHHHHHHHHhHHHHHHHHHHHHHHhccCCCCEEEEECCC
Confidence 001 110111124466666666666665433 277788875
No 132
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.78 E-value=5.2e-05 Score=66.31 Aligned_cols=148 Identities=11% Similarity=0.062 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC---CcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCC
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG---LVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQP 159 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~---~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~ 159 (284)
.+.+|+|.|..||||+++.+.|.+.++ +.++.+.. ...++.....+.......
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~------------------------Pt~eE~~~~ylwR~~~~l 129 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKA------------------------PTDEEKSHDFLWRIEKQV 129 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCS------------------------CCHHHHTSCTTHHHHTTC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCC------------------------CChhhhcCCHHHHHHHhC
Confidence 578999999999999999999999884 44443211 111111112234456666
Q ss_pred CCCCCeEEEeC--ccc-----------------CHHHHHHHHH---cCCCCcEEEEEEcCHHHHHHHHHcCCCCCCCCce
Q 023307 160 DSQENGWLLDG--YPR-----------------SLSQATALKK---YGFQPDLFILLEVPEDTLVERVVGRRLDPVTGKI 217 (284)
Q Consensus 160 ~~~~~g~IlDg--~p~-----------------~~~q~~~l~~---~~~~~~~vI~L~~~~e~~~~Rl~~R~~~~~~g~~ 217 (284)
...|..+|+|+ |.+ .+.++..|+. ......+-+||+++.++..+|+..|..++..
T Consensus 130 P~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k--- 206 (289)
T 3rhf_A 130 PAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSK--- 206 (289)
T ss_dssp CCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGG---
T ss_pred CCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcc---
Confidence 67788899996 211 1233344443 2224556699999999999999998543221
Q ss_pred eeccCCCCCchHHhhhhcccCCCCHHHHHHHHHHHHHhHHHHHHHhhc---cceEEeccC
Q 023307 218 YHVKYSPPETDEIAARLTKRFDDTEEKVKLRLKTHHHNVEAVLSLYED---VTVEVCDMI 274 (284)
Q Consensus 218 ~~~~~~~p~~~~~~~~l~~r~~~~~~~i~~rl~~~~~~~~~~~~~y~~---~~i~ID~~~ 274 (284)
..+.......-.+++..|.+.++.++..-.. -..+|+++.
T Consensus 207 -----------------~WK~s~~D~~~r~~wd~Y~~a~e~ml~~T~t~~APW~VV~add 249 (289)
T 3rhf_A 207 -----------------HWKYSRGDLAERAYWDDYMDAYSVAFEKTSTEIAPWHVVPANK 249 (289)
T ss_dssp -----------------GGGCCHHHHHHHTTHHHHHHHHHHHHHHHCCSSSCEEEEECSS
T ss_pred -----------------cccCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCC
Confidence 1111221223344578888888887776543 267777754
No 133
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.65 E-value=3.1e-05 Score=68.29 Aligned_cols=33 Identities=39% Similarity=0.561 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
..|..++|.||||+|||++|+.|++.++..++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~ 66 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIM 66 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 345678999999999999999999999876554
No 134
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=6.8e-05 Score=69.02 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+.-|+|.||||+|||.+|+.+|.+++++++.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 45699999999999999999999999887764
No 135
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.54 E-value=4.9e-05 Score=69.90 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~dd 117 (284)
+++|+|+||+||||||++..|++.++..++++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3589999999999999999999999998998776
No 136
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.47 E-value=6.6e-05 Score=71.26 Aligned_cols=36 Identities=3% Similarity=0.040 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCC-------cEeehhH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGL-------VHIAAGD 117 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~-------~~is~dd 117 (284)
..+.+|+|+|.+||||||+++.|+++++. .+++.|+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 35689999999999999999999999986 5676554
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.46 E-value=0.00016 Score=58.58 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh----C--CcEeehhHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY----G--LVHIAAGDLLRA 121 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~----~--~~~is~ddlir~ 121 (284)
.+..++|.|++|+||||+++.|+..+ | +.+++..+++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 45789999999999999999998766 4 456776666654
No 138
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=8.6e-05 Score=69.07 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.+.-|+|.||||+|||.+|+.+|.+++++++.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 356799999999999999999999999887654
No 139
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.45 E-value=4.6e-05 Score=68.96 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcE
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVH 112 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~ 112 (284)
...+.|+|+|++||||||+++.|++.+++.+
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3446799999999999999999999998877
No 140
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.44 E-value=0.0001 Score=63.00 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.+..|+|.|+||+|||++|+.|++.++.+++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34569999999999999999999999877654
No 141
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.43 E-value=0.0001 Score=63.29 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+.-++|.|+||+||||+++.|+..++.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 34599999999999999999999998766543
No 142
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.43 E-value=0.0022 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..++|.|++|+|||++++.+++.+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999999875
No 143
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0001 Score=68.55 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.+.-|+|.||||+|||++|+.+|..++++++.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 345699999999999999999999999887654
No 144
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=9.3e-05 Score=68.91 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.+.-|+|.||||+|||++|+.||.+++++++.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 346799999999999999999999999887653
No 145
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.41 E-value=0.00011 Score=64.77 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=31.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC-------CcEe-ehhHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG-------LVHI-AAGDLL 119 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~-------~~~i-s~ddli 119 (284)
..++.+|.|.|++||||||+++.|++.++ ...+ +.|+.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 45678999999999999999999998774 3455 777654
No 146
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.35 E-value=0.00014 Score=64.18 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh--hHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA--GDLLR 120 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~--ddlir 120 (284)
..+..|+|.||||+|||++|+.|+..++..++.+ .++..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 3456799999999999999999999998766544 44443
No 147
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.33 E-value=0.00015 Score=62.97 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
..+..++|.|+||+|||++++.|++.++..++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 345679999999999999999999999887664
No 148
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.32 E-value=0.00016 Score=63.34 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
+..++|.|+||+||||+|+.|++.++..++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 4679999999999999999999999876654
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.32 E-value=0.00016 Score=63.05 Aligned_cols=28 Identities=25% Similarity=0.566 Sum_probs=24.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 87 IMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
++|.|||||||||+++.|+..++...+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~ 74 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFIS 74 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999988765543
No 150
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00016 Score=66.89 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+.-|+|.||||+|||.+|+.||.+++++++.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 45799999999999999999999999887654
No 151
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.00015 Score=67.72 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.+.-|+|.||||+|||++|+.||.+++++++.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 456799999999999999999999999887654
No 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.28 E-value=0.00017 Score=58.92 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcE
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVH 112 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~ 112 (284)
++++|+|++||||||+.+.|+..+++.+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 4689999999999999999999887443
No 153
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.27 E-value=0.00016 Score=65.42 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+..|+|.||||+|||++|+.|++.++.+++.+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA 82 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence 45699999999999999999999998877654
No 154
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.27 E-value=0.0002 Score=61.98 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=29.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
...+..++|.|+||+|||++|+.|++.++.+++.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34557899999999999999999999998876643
No 155
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.27 E-value=0.00015 Score=60.37 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~d 116 (284)
..+..|+|+|++|+||||+|..|+++.+ .+++.|
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 3457899999999999999999998866 777744
No 156
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.24 E-value=0.00021 Score=63.65 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+..|+|.||||+|||++|+.|++.++..++.+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 35799999999999999999999998876654
No 157
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.22 E-value=0.00018 Score=67.06 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAAG 116 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~d 116 (284)
+..|+|.||||+||||+|+.|++.++.+++.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 456999999999999999999999998877654
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.21 E-value=0.00031 Score=56.29 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+..++|.|++|+|||++++.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999999886
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.17 E-value=0.00025 Score=56.77 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+..++|.|++|+||||+++.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999987
No 160
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.16 E-value=0.00026 Score=61.93 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
+..++|.|+||+|||++|+.|++.++..++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4568999999999999999999999876553
No 161
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.16 E-value=0.00053 Score=56.37 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=29.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh---CC--cEeehhHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLRA 121 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~---~~--~~is~ddlir~ 121 (284)
..++|.|++|+||||+++.|+..+ +. .+++..+++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRE 96 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHH
Confidence 689999999999999999999876 33 44666666544
No 162
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.14 E-value=0.00027 Score=64.23 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+..|+|.|+||+|||++|+.|++.++.+++.+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 103 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAIS 103 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 45699999999999999999999998776653
No 163
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.12 E-value=0.00031 Score=62.71 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCcEee
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY-GLVHIA 114 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~-~~~~is 114 (284)
+.-|+|.||||+|||++|+.|+..+ +..++.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 3579999999999999999999998 655543
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.11 E-value=0.00031 Score=60.11 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=24.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
-++|.|+||+||||+++.|+..++...+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 39999999999999999999988655544
No 165
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.10 E-value=0.00035 Score=61.28 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+..++|.|+||+|||++|+.|++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334579999999999999999999887
No 166
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.10 E-value=0.00032 Score=63.51 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.-|+|.||||+|||++|+.|++.++..++.+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 4589999999999999999999998877654
No 167
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.10 E-value=7.8e-05 Score=65.95 Aligned_cols=115 Identities=15% Similarity=0.214 Sum_probs=60.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-CcEeehhHHHHH---HHHcCCc-----chHHHHHHHHcCCCcChHH------
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG-LVHIAAGDLLRA---EIAAGSE-----NGKRAKEHMEKGQLVPDEI------ 147 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~-~~~is~ddlir~---~~~~~~~-----~~~~~~~~~~~g~~~~~~~------ 147 (284)
.+..|+|+|| ||+|+.+.|.+.+. -..+++...-|. ...+|.+ ....++..+.+|.++....
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~Y 180 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY 180 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEe
Confidence 4456889998 79999999998763 111211111111 0001111 2234555566666553221
Q ss_pred --HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcC-HHHHHHHHHcCC
Q 023307 148 --VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVP-EDTLVERVVGRR 209 (284)
Q Consensus 148 --~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~-~e~~~~Rl~~R~ 209 (284)
-.+.+.+.+.+ ++.+|+|..+....+ +......| ++|||..| .+++.+ +.+|+
T Consensus 181 Gt~~~~V~~~~~~----G~~vildid~~g~~~---l~~~~~~p-i~IfI~pps~~~L~~-L~~R~ 236 (295)
T 1kjw_A 181 GTSVQSVREVAEQ----GKHCILDVSANAVRR---LQAAHLHP-IAIFIRPRSLENVLE-INKRI 236 (295)
T ss_dssp EEEHHHHHHHHHT----TCEEEECCCTTHHHH---HHHTTCCC-EEEEECCSSHHHHHH-HCTTS
T ss_pred eeeHHHHHHHHhc----CCeEEEEeCHHHHHH---HHhcccCC-eEEEEECCCHHHHHH-HHhcC
Confidence 12223344433 788999986544433 33333344 78888866 455544 66664
No 168
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.06 E-value=0.00042 Score=62.67 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.+..|+|.|+||+|||++|+.|++.++..++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 45679999999999999999999999877654
No 169
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.05 E-value=0.00015 Score=62.43 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=26.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.-++|.|+||+|||++|+.|++.++.+++.
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 348899999999999999999998876654
No 170
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.02 E-value=0.00051 Score=61.16 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=25.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...+.+|+|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4567899999999999999999999865
No 171
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.01 E-value=0.00043 Score=62.02 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcE
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVH 112 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~ 112 (284)
..++|.||||+||||+++.|+..++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 5699999999999999999999987654
No 172
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=96.99 E-value=0.0013 Score=65.16 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=61.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-CcEeehhHHHHHHH---HcCCc-----chHHHHHHHHcCCCcChHH------
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG-LVHIAAGDLLRAEI---AAGSE-----NGKRAKEHMEKGQLVPDEI------ 147 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~-~~~is~ddlir~~~---~~~~~-----~~~~~~~~~~~g~~~~~~~------ 147 (284)
.+..|+|+|| ||+|+.+.|.+.+. -..+++...-|... .+|.+ ....++..+.+|.++....
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~Y 606 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLY 606 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccc
Confidence 3467889998 49999999988763 11222222222111 11111 2344556666666654322
Q ss_pred --HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCHHHHHHHHHcCC
Q 023307 148 --VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPEDTLVERVVGRR 209 (284)
Q Consensus 148 --~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~e~~~~Rl~~R~ 209 (284)
-.+.+.+.+. .++.+|+|..+... +.+......| ++|||..+.-..++++.+|+
T Consensus 607 Gt~~~~v~~~~~----~g~~~ildi~~~~~---~~l~~~~~~p-~~ifi~pps~~~L~~l~~R~ 662 (721)
T 2xkx_A 607 GTSVQSVREVAE----QGKHCILDVSANAV---RRLQAAHLHP-IAIFIRPRSLENVLEINKRI 662 (721)
T ss_pred eeeHHHHHHHHH----CCCcEEEeCCHHHH---HHHHhcccCC-EEEEEeCCcHHHHHHHhccC
Confidence 1222333333 47889999854333 3333323344 78888876544444477764
No 173
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.99 E-value=0.00036 Score=58.64 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|+||+||||||+.+.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 456789999999999999999999866
No 174
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.98 E-value=0.00032 Score=55.48 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
....++|.|++|+||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999876
No 175
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.96 E-value=0.00049 Score=57.09 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
..+.+++|.||+||||||+.+.|+.-+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4456899999999999999999998764
No 176
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.96 E-value=0.00051 Score=59.67 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
-++|.|++|+||||+++.|+..++...+.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 399999999999999999999886555443
No 177
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.95 E-value=0.00054 Score=64.08 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC--CcEee
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYG--LVHIA 114 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~--~~~is 114 (284)
+.-++|.||||+|||++|+.|++.++ ++++.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence 35799999999999999999999998 65554
No 178
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.95 E-value=0.00055 Score=62.52 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=28.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+..|+|.|+||+|||++|+.|+..++..++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 46899999999999999999999998877653
No 179
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=0.0034 Score=55.00 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+...++|.|++|+||||+++.+++.+
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 33359999999999999999999886
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.94 E-value=0.0067 Score=54.13 Aligned_cols=30 Identities=10% Similarity=0.054 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCc
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLV 111 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~ 111 (284)
.-+..++|.|++|+|||++|+.|++.+...
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 345679999999999999999999988654
No 181
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.94 E-value=0.001 Score=60.82 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=29.9
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
....+.+|+|.||+|+||||+++.|+..++..++.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 34566799999999999999999999988776665
No 182
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.93 E-value=0.00056 Score=57.17 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGD 117 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~dd 117 (284)
.+..++|.|++|+||||+++.+++.++ +.+++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 557899999999999999999998763 34555444
No 183
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.92 E-value=0.00061 Score=64.74 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+..++|.||||+||||+|+.|++.+++.++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 46899999999999999999999999877653
No 184
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.92 E-value=0.00091 Score=59.29 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh---CC--cEeehhHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAGDLLR 120 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~---~~--~~is~ddlir 120 (284)
+..++|.|+||+||||+++.++..+ +. .+++..++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~ 78 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ 78 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH
Confidence 4569999999999999999999877 44 4566665543
No 185
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.91 E-value=0.00057 Score=60.83 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
...++|.|+||+|||++|+.+++.++..++.+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 34699999999999999999999998776543
No 186
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.89 E-value=0.00067 Score=54.95 Aligned_cols=25 Identities=24% Similarity=0.022 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+++|.|+|++||||||++..|...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998865
No 187
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.89 E-value=0.00065 Score=63.96 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.-|+|.||||+||||+++.|+...+.+++.+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 4599999999999999999999998877653
No 188
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.87 E-value=0.00064 Score=56.82 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
+...++|.||||+||||+|..|++.++-.+++
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 33469999999999999999999988655543
No 189
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.85 E-value=0.00048 Score=53.87 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
....|+|.|+||+|||++|+.|++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 33458999999999999999998754
No 190
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.79 E-value=0.00058 Score=68.15 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
|.-|+|.||||+|||++|+.||.++|..++.+
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 46799999999999999999999999877654
No 191
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.78 E-value=0.0011 Score=62.03 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.+...++|.|+||+||||+++.|++.++..++.+
T Consensus 48 ~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 48 GHLHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 3446799999999999999999999998776653
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.77 E-value=0.00083 Score=62.62 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-CCcEe--ehhHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY-GLVHI--AAGDLL 119 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~-~~~~i--s~ddli 119 (284)
+.-|+|.||||+|||++|+.|+..+ +..++ +..+++
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 4679999999999999999999998 65554 444544
No 193
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.75 E-value=0.00093 Score=55.38 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
+..++|.|++|+||||+++.+++.++.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 357999999999999999999988743
No 194
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.72 E-value=0.0013 Score=52.59 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|.|+.||||||+.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 566799999999999999999999876
No 195
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.70 E-value=0.0012 Score=53.64 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.++|+|+|++||||||+++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 196
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00098 Score=59.46 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=25.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...+..++|.|+||+|||++++.+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999999887
No 197
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.67 E-value=0.00099 Score=55.52 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|.|++||||||+++.|+..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998743
No 198
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.67 E-value=0.0013 Score=63.01 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
.+..++|.||||+||||+++.|+..++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 4678999999999999999999999876544
No 199
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.66 E-value=0.00094 Score=56.41 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La 105 (284)
..+.+++|.||+||||||+++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 456789999999999999999987
No 200
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.66 E-value=0.002 Score=58.07 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999876
No 201
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.66 E-value=0.0011 Score=59.50 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
+..++|.||||+|||++|+.+++.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 358999999999999999999999864
No 202
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.65 E-value=0.00064 Score=55.61 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=23.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCc--Eeeh
Q 023307 87 IMISGAPASGKGTQCELIKEKYGLV--HIAA 115 (284)
Q Consensus 87 I~I~G~pGsGKSTla~~La~~~~~~--~is~ 115 (284)
|+|+|++||||||+|..|+.. +.+ |+.+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEec
Confidence 799999999999999999976 654 4443
No 203
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.57 E-value=0.001 Score=58.57 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
.+..++|.|++|+|||++|+.+++.++..++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3457999999999999999999999887654
No 204
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.56 E-value=0.0016 Score=57.78 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
++.+|+|+|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999765
No 205
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.56 E-value=0.0015 Score=61.63 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
..+.-++|.|+||+|||++|+.|+..++.+++.+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3445799999999999999999999998766543
No 206
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.55 E-value=0.0011 Score=59.49 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+..++|.|++|+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 445689999999999999999999877
No 207
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.54 E-value=0.0018 Score=57.96 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=24.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..++.+|+|+|++||||||+++.|+..+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999998765
No 208
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.54 E-value=0.001 Score=59.03 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=25.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
..++|.|+||+|||++++.|++.++..++
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 46999999999999999999999886654
No 209
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.0015 Score=58.53 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+..++|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999877
No 210
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.54 E-value=0.0016 Score=61.70 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.-++|.||||+||||+++.|+...+..++.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 349999999999999999999988765554
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.54 E-value=0.00043 Score=54.05 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
...|+|.|+||+|||++|+.|++..+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC
Confidence 34589999999999999999987665
No 212
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.53 E-value=0.0019 Score=55.83 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.....+++|+||+||||||+.+.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4456789999999999999999998754
No 213
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.53 E-value=0.0014 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+|+|+|++||||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999999876
No 214
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.53 E-value=0.0016 Score=57.67 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=27.0
Q ss_pred hhccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 78 ASATVEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 78 ~~~~~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
...-+.+.+++|+|++||||||+++.|+.-+.
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 34456678999999999999999999998763
No 215
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.51 E-value=0.00077 Score=54.62 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.++.|+|++||||||+++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998766
No 216
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.51 E-value=0.0013 Score=58.15 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
.+..+++.|+||+|||++++.|++.++..++.+
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 345778888899999999999999998776653
No 217
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.50 E-value=0.0017 Score=54.01 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|.|++||||||+++.|+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455789999999999999999998543
No 218
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.50 E-value=0.0019 Score=58.09 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+.++|.|++|+||||+++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999999887
No 219
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.50 E-value=0.0019 Score=60.54 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.....++|+|+||+|||++++.|++.+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 445578999999999999999999986
No 220
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.49 E-value=0.002 Score=57.15 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 356799999999999999999999766
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.49 E-value=0.0021 Score=56.19 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..++|.|+||+||||+|+.|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 222
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.48 E-value=0.0016 Score=52.96 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
...-|+|.|++|+||||+|..|.+ .|..+++ ||.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lva-DD~ 48 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID-RGHQLVC-DDV 48 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEE-SSE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEec-CCE
Confidence 456799999999999999999987 4888776 443
No 223
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.46 E-value=0.0012 Score=61.88 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=50.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee-hhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIA-AGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPD 160 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is-~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~ 160 (284)
..+..|+|.||+|+| ++++|.+.+.-.+.+ +.. -|. +...| ....+.+ ...+.+.+.+
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~~TR-pR~----gE~dG-------~~Y~FTs----~~~V~~vl~~-- 280 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQIAKSE-PRD----AGTDQ-------RSSGIIR----LHTIKQIIDQ-- 280 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEEECCCB-C---------------------CBCC----HHHHHHHHTT--
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCceeeecCC-CCC----ccccc-------ccCCccc----HHHHHHHHHC--
Confidence 355679999999999 888888877432332 211 111 11111 1122233 2334444443
Q ss_pred CCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcCH-HHHHH
Q 023307 161 SQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVPE-DTLVE 203 (284)
Q Consensus 161 ~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~~-e~~~~ 203 (284)
++.+|||-.+....+ +......| ++|||..|. +++.+
T Consensus 281 --Gk~~iLdId~qg~~~---l~~~~~~p-~~IFI~PPS~e~L~~ 318 (468)
T 3shw_A 281 --DKHALLDVTPNAVDR---LNYAQWYP-IVVFLNPDSKQGVKT 318 (468)
T ss_dssp --TCEEEECCCHHHHHH---HHHTTCCC-EEEEEECSCHHHHHH
T ss_pred --CCeEEEEeCHHHHHH---HHhcCCCC-EEEEEeCcCHHHHHH
Confidence 899999986544444 44433445 566666655 44544
No 224
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.46 E-value=0.0014 Score=55.69 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+--
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345678999999999999999999753
No 225
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.46 E-value=0.0018 Score=53.61 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=27.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHhC--CcEeehh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKYG--LVHIAAG 116 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~~--~~~is~d 116 (284)
-..+.+++|.|++|+||||++..|+...+ +.+++..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 34567999999999999999999986443 4455543
No 226
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.46 E-value=0.0022 Score=56.74 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+|+|+|+.||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998765
No 227
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.43 E-value=0.0026 Score=56.39 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC----C--cEeehhHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYG----L--VHIAAGDLLRA 121 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~----~--~~is~ddlir~ 121 (284)
...++|.|++|+|||++++.|+..+. . .++++.+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~ 195 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID 195 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH
Confidence 46899999999999999999987543 3 34666666554
No 228
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.43 E-value=0.0022 Score=51.85 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=22.8
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...+...|+|+|.+|+||||+...|..
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 445567999999999999999987765
No 229
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.41 E-value=0.0019 Score=52.73 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=22.4
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+...+...|+|+|.+|+||||+.+.|...
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34456689999999999999999999753
No 230
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.40 E-value=0.0023 Score=52.24 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+.+++++|++|+||||++..++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999996666554
No 231
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.39 E-value=0.0022 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.+++++|+|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4579999999999999999876433
No 232
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.38 E-value=0.0016 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|+|+.||||||+.+.|+--
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999999753
No 233
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.38 E-value=0.0016 Score=55.92 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC-----CcEeehhH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYG-----LVHIAAGD 117 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~-----~~~is~dd 117 (284)
+..|+|.|+||+|||++|+.|++..+ +.+++..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 35689999999999999999998753 44555444
No 234
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.38 E-value=0.0034 Score=58.43 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh-----CC--cEeehhHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY-----GL--VHIAAGDLL 119 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~-----~~--~~is~ddli 119 (284)
...++|.|++|+||||+++.++..+ +. .+++..++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 5679999999999999999999876 44 455655554
No 235
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.37 E-value=0.0021 Score=53.06 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=22.4
Q ss_pred CCchhhHHhhhccCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 69 TNSANFQVLASATVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 69 ~~p~~~~~~~~~~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..|.....|.........|+|+|.+|+||||+.+.|...
T Consensus 13 ~~~~~~~~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 13 GLVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp --------------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccCCCCCCCcccceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 334333344444456679999999999999999999763
No 236
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.32 E-value=0.0019 Score=64.68 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
..+..|+|+|+|||||||+++.|+..++..++.+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 3456799999999999999999999988766544
No 237
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.32 E-value=0.002 Score=54.92 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+.-
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 355678999999999999999999753
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.31 E-value=0.0025 Score=63.57 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEeeh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIAA 115 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ 115 (284)
+.-|+|.||||+|||.+|+.||.+++..++++
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 34589999999999999999999999988764
No 239
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.28 E-value=0.0023 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.+++|.|+.||||||+.+.|+--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999853
No 240
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.27 E-value=0.0022 Score=53.86 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|.|++|+||||+++.|+..
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45679999999999999999999874
No 241
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.27 E-value=0.0023 Score=54.61 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+.-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456679999999999999999999754
No 242
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.27 E-value=0.0021 Score=55.59 Aligned_cols=27 Identities=30% Similarity=0.165 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+--
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999753
No 243
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.24 E-value=0.0021 Score=56.13 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+-+++|+||.||||||+.+.|+--
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 345678999999999999999999753
No 244
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.24 E-value=0.0034 Score=56.88 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+|+|+|+.||||||+++.|+..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 356799999999999999999999765
No 245
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.23 E-value=0.0032 Score=55.66 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=29.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhH
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYGLVHIAAGD 117 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~~~~is~dd 117 (284)
..++|.|++|+||||+++.+++..++.+++...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 689999999999999999999988877777644
No 246
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.22 E-value=0.0023 Score=55.55 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.++.|+|+.||||||+.+.|+--
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 345678999999999999999999753
No 247
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.22 E-value=0.0032 Score=49.87 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+.+...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999998764
No 248
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.21 E-value=0.0031 Score=55.62 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
++.+|+|+|++|+||||++..|+..+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998655
No 249
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.20 E-value=0.0028 Score=54.36 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+.+++|.|+.||||||+.+.|+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556899999999999999999985
No 250
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.20 E-value=0.0024 Score=54.81 Aligned_cols=27 Identities=37% Similarity=0.405 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|+|+.||||||+.+.|+.-+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999997543
No 251
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.20 E-value=0.0024 Score=55.31 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+--+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3566789999999999999999997543
No 252
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.19 E-value=0.003 Score=54.82 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+--
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456678999999999999999999863
No 253
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.18 E-value=0.0025 Score=55.40 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=24.2
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.+++|+|+.||||||+.+.|+.-+
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34566799999999999999999997543
No 254
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=96.17 E-value=0.0044 Score=54.52 Aligned_cols=114 Identities=13% Similarity=0.155 Sum_probs=56.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC-cEeeh---hHHHHHHHHcCCc-----chHHHHHHHHcCCCcChHH-------
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGL-VHIAA---GDLLRAEIAAGSE-----NGKRAKEHMEKGQLVPDEI------- 147 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~-~~is~---ddlir~~~~~~~~-----~~~~~~~~~~~g~~~~~~~------- 147 (284)
...|+|+|| ||+|+.+.|.+.+.- ..+++ ..-.|....+|.+ ....++..+.+|.++..+.
T Consensus 100 ~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~YG 176 (292)
T 3tvt_A 100 TRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYG 176 (292)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccceeE
Confidence 345888887 599999999988742 11211 1111111111111 1133445555555543221
Q ss_pred -HHHHHHHHhcCCCCCCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcC-HHHHHHHHHcC
Q 023307 148 -VVTMVKERLSQPDSQENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVP-EDTLVERVVGR 208 (284)
Q Consensus 148 -~~~~l~~~i~~~~~~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~-~e~~~~Rl~~R 208 (284)
....+.+.+.+ ++.+|+|..+....+ +......+ ++|||..| .+++.+|+.+|
T Consensus 177 T~~~~V~~~~~~----gk~viLdid~qg~~~---lk~~~~~p-i~IFI~PpS~e~L~~r~~~r 231 (292)
T 3tvt_A 177 TSVASVREVAEK----GKHCILDVSGNAIKR---LQVAQLYP-VAVFIKPKSVDSVMEMNRRM 231 (292)
T ss_dssp EEHHHHHHHHHH----TCEEEECCCTHHHHH---HHHTTCCC-EEEEECCSCHHHHHHTCTTS
T ss_pred EehHHHHHHHHc----CCcEEEeccchhhhh---cccccccc-eEEEEECCCHHHHHHHHhCC
Confidence 12233333433 688888876544444 33333333 55666654 45666655444
No 255
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.17 E-value=0.0025 Score=54.35 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|.|+.||||||+.+.|+--
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999999754
No 256
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.17 E-value=0.0029 Score=56.26 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
.++|.|+||+||||+++.|++.++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999998753
No 257
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.17 E-value=0.0027 Score=57.41 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcE
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVH 112 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~ 112 (284)
..+++|+|++||||||+++.|+..+....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 57899999999999999999998876543
No 258
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.17 E-value=0.0035 Score=62.23 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh----------CCcEeehhH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY----------GLVHIAAGD 117 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~----------~~~~is~dd 117 (284)
.....++|.|+||+|||++|+.|++.+ +..++.++-
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 455679999999999999999999997 666665443
No 259
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.17 E-value=0.0025 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|.|+.||||||+.+.|+.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999754
No 260
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.0029 Score=56.51 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.++|.||+|+||||+++.|++.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999999876
No 261
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.16 E-value=0.0035 Score=54.74 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=24.4
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.+++|.|+||+||||+++.|+..+
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34566799999999999999999988654
No 262
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.16 E-value=0.0022 Score=53.61 Aligned_cols=25 Identities=16% Similarity=-0.013 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+.+++|.|+.||||||+.+.|+-
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999975
No 263
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.15 E-value=0.0027 Score=54.88 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=23.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+.-+
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3556799999999999999999997543
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.13 E-value=0.0027 Score=53.75 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+++|+|+.||||||+.+.|+.-+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999997643
No 265
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.13 E-value=0.0036 Score=49.85 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+.+.|..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhh
Confidence 3457899999999999999999875
No 266
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.13 E-value=0.0028 Score=54.70 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|.|+.||||||+.+.|+--
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999753
No 267
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.12 E-value=0.0049 Score=56.51 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=54.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDS 161 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~ 161 (284)
..+..|+|.||+| +|++++|.+.+.-.+.++. +. ...+...|. ...+++ .+.+.+.+.
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~~t---r~-pR~gE~dG~-------~Y~Fv~----~~~V~~~~~---- 287 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQIAK---SE-PRDAGTDQR-------SSGIIR----LHTIKQIID---- 287 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEEECC---CC-CCCSSSCCC---------CCCC----HHHHHHHHT----
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCcccccccc---CC-CCCcccCCc-------cCCcCc----HHHHHHHHH----
Confidence 3556799999998 8999999888743344321 11 001111110 112333 233444444
Q ss_pred CCCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEcC-HHHHHHHHHcC
Q 023307 162 QENGWLLDGYPRSLSQATALKKYGFQPDLFILLEVP-EDTLVERVVGR 208 (284)
Q Consensus 162 ~~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~~-~e~~~~Rl~~R 208 (284)
.++.+|||-.+....+ +......| ++|||..| .+++.+| .+|
T Consensus 288 ~Gk~~iLdId~qg~~~---l~~~~~~p-~~IFI~PPS~~~L~~~-~~r 330 (391)
T 3tsz_A 288 QDKHALLDVTPNAVDR---LNYAQWYP-IVVFLNPDSKQGVKTM-RMR 330 (391)
T ss_dssp TTCEEEECCCHHHHHH---HHHTTCCC-EEEEEECCCHHHHHHH-HHH
T ss_pred cCCEEEEEeCHHHHHH---HHhCCCCC-EEEEEeCcCHHHHHHH-Hhc
Confidence 3899999986544444 44434445 56666665 4555554 444
No 268
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.12 E-value=0.0036 Score=49.43 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...|+|.|++|+||||+.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999974
No 269
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.12 E-value=0.004 Score=58.74 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+|+|+|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 356799999999999999999998765
No 270
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.11 E-value=0.0037 Score=55.97 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
+..++|.|++|+||||+++.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998864
No 271
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.11 E-value=0.0023 Score=53.74 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|.|+.||||||+.+.|+.-
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45568999999999999999999753
No 272
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.09 E-value=0.004 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
++...|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999975
No 273
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.06 E-value=0.0035 Score=56.79 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+-+++|.||+||||||+.+.|+-
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHhc
Confidence 4567899999999999999999985
No 274
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.05 E-value=0.0043 Score=48.12 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
...|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999998753
No 275
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.05 E-value=0.0019 Score=57.45 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
.++|.|+||+|||++|+.|++.++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 499999999999999999999876
No 276
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.05 E-value=0.0051 Score=50.89 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.++|+|+|.+|+||||+...|...+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998775
No 277
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.05 E-value=0.0031 Score=54.18 Aligned_cols=26 Identities=15% Similarity=0.126 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|.|+.||||||+.+.|+--
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 45568999999999999999999753
No 278
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.04 E-value=0.004 Score=52.33 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~d 116 (284)
..+.+++|.|+||+||||++..++... ++.+++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 455689999999999999988876543 34556543
No 279
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.04 E-value=0.0033 Score=54.51 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+--
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345678999999999999999999753
No 280
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.03 E-value=0.0031 Score=55.11 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|+|+.||||||+.+.|+--+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3456789999999999999999997543
No 281
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.03 E-value=0.0048 Score=47.89 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+.|+|.|.+|+||||+.+.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 282
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.03 E-value=0.0068 Score=54.34 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=25.0
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...+..++.|+|+|||||||+.+.|...+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34667899999999999999999998654
No 283
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.02 E-value=0.0046 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
+...|+|.|.+|+||||+...|..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999998875
No 284
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.02 E-value=0.0032 Score=56.16 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.++|.|++|+||||+++.|+..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999865
No 285
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.02 E-value=0.0038 Score=50.38 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+.+.|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhc
Confidence 3447899999999999999999875
No 286
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.00 E-value=0.0033 Score=50.66 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=21.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+...|+|+|.+|+||||+.+.|...
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 345689999999999999999988643
No 287
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.99 E-value=0.0046 Score=57.41 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.+|+|+|++|+||||++..|+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998765
No 288
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.99 E-value=0.0038 Score=50.71 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
...|+|+|++||||||+.+.|...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999763
No 289
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.99 E-value=0.0051 Score=55.95 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+|+|+|++||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455789999999999999999998765
No 290
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.98 E-value=0.0072 Score=54.49 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=24.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+..+|+|+|.||+||||++..|+..+
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999999998775
No 291
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.97 E-value=0.0042 Score=56.74 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+-+++|.||+||||||+.+.|+--
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcC
Confidence 45678999999999999999999853
No 292
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.97 E-value=0.004 Score=51.13 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+...|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhc
Confidence 3456899999999999999999875
No 293
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.056 Score=47.63 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+.+.++|.||+|+||||+++.|++.+
T Consensus 17 ~~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 17 EGISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhC
Confidence 36799999999999999999999863
No 294
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.96 E-value=0.0041 Score=50.00 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
++...|+|+|.+|+||||+...|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999999753
No 295
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.95 E-value=0.0036 Score=53.88 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.+++|.|+.||||||+.+.|+.-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999999754
No 296
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.94 E-value=0.0044 Score=56.15 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+-+++|.||+||||||+.+.|+--
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCC
Confidence 45678999999999999999999853
No 297
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.94 E-value=0.0049 Score=49.78 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=21.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
......|+|+|.+|+||||+.+.|..
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHh
Confidence 34557899999999999999988875
No 298
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.94 E-value=0.0041 Score=51.24 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+.+.|..
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 3457899999999999999999874
No 299
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.93 E-value=0.0065 Score=50.42 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+..+|+|+|.+|+||||+...|...+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456889999999999999999998764
No 300
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.91 E-value=0.0052 Score=50.05 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..|+|.|++|+||||+.+.|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999763
No 301
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.91 E-value=0.0046 Score=56.08 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+-+++|.||+||||||+.+.|+--
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcC
Confidence 345678999999999999999999853
No 302
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.91 E-value=0.0055 Score=57.00 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
++.+|+|+|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998766
No 303
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.91 E-value=0.0052 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999998865
No 304
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.89 E-value=0.0054 Score=53.28 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..++|+|++||||||+.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998754
No 305
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.88 E-value=0.0042 Score=53.86 Aligned_cols=25 Identities=8% Similarity=0.012 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.+.+++|.|++||||||++..|+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998853
No 306
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.88 E-value=0.0047 Score=55.86 Aligned_cols=26 Identities=31% Similarity=0.264 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
-..+-+++|.||+||||||+.+.|+-
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhC
Confidence 34567899999999999999999985
No 307
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.87 E-value=0.0062 Score=54.89 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...+|+|+|+|||||||+.+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999998754
No 308
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.87 E-value=0.0049 Score=56.11 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+-+++|.||+||||||+.+.|+--
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcC
Confidence 345678999999999999999999853
No 309
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.86 E-value=0.0022 Score=64.26 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
+..++|.||||+||||+|+.|+..++..++.
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4568999999999999999999998765544
No 310
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.85 E-value=0.0053 Score=48.45 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|.+|+||||+.+.|...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34578999999999999999999753
No 311
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.85 E-value=0.0061 Score=47.37 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999875
No 312
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.84 E-value=0.0051 Score=49.22 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+...|+|+|.+|+||||+.+.|..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhc
Confidence 34567999999999999999999974
No 313
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.84 E-value=0.0056 Score=55.41 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-+|+|+||+||||||+.+.|...+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3489999999999999999987654
No 314
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.83 E-value=0.006 Score=47.59 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 456899999999999999999975
No 315
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.83 E-value=0.0049 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+...|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999875
No 316
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.82 E-value=0.0069 Score=53.98 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+|+|+|++|+||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998765
No 317
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.82 E-value=0.007 Score=52.48 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGL 110 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~ 110 (284)
...|+|.||||+|||.+|+.|+..+++
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 447999999999999999999987644
No 318
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.82 E-value=0.0075 Score=50.93 Aligned_cols=29 Identities=14% Similarity=0.040 Sum_probs=23.1
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...+..+++++|++|+||||++-.++.++
T Consensus 8 ~~~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 8 SKKIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp ---CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred ccCCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34556899999999999999998887766
No 319
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.80 E-value=0.0054 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+.+.|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 4457899999999999999999874
No 320
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.80 E-value=0.0055 Score=55.64 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=23.8
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.-..+-++.|+|++||||||+.+.|+--
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3456679999999999999999999753
No 321
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.80 E-value=0.0066 Score=47.28 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
+...|+|+|.+|+||||+.+.|..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999875
No 322
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.79 E-value=0.0066 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=21.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+...|+|+|.+|+||||+...|..
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 34568999999999999999999865
No 323
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.78 E-value=0.0047 Score=54.28 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+.+++|+|+.||||||+.+.|+.-
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 356679999999999999999999754
No 324
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.78 E-value=0.0054 Score=55.84 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+-+++|.||+||||||+.+.|+-
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHc
Confidence 4556899999999999999999985
No 325
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.78 E-value=0.0075 Score=48.65 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
......|+|+|.+|+||||+...|..
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHc
Confidence 44567899999999999999999975
No 326
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.76 E-value=0.005 Score=48.65 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999864
No 327
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.75 E-value=0.0056 Score=54.63 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh--CCcEeeh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY--GLVHIAA 115 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~--~~~~is~ 115 (284)
.+..++|.|+||+||||+|..++... .+.++++
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 44578999999999999999998754 3456665
No 328
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.75 E-value=0.0057 Score=53.35 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.++|.|++|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999999876
No 329
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.74 E-value=0.0055 Score=55.21 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=24.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-+.+.++.|.|++||||||+++.|+..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998765
No 330
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0032 Score=50.91 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|.+|+||||+.+.|...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcC
Confidence 34578999999999999999998764
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.73 E-value=0.0047 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+.+++|.|+.||||||+.+.|+--
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999999753
No 332
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.73 E-value=0.0059 Score=55.95 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.4
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.-..+.+++|.||+||||||+.+.|+-
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 345667999999999999999999974
No 333
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.72 E-value=0.0063 Score=60.31 Aligned_cols=28 Identities=14% Similarity=0.331 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcEe
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVHI 113 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~i 113 (284)
.++|.|+||+|||++|+.|++.++..++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 6999999999999999999999986554
No 334
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.71 E-value=0.0062 Score=49.50 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=20.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+...|+|+|.+|+||||+.+.|..
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHh
Confidence 44567899999999999999987754
No 335
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.70 E-value=0.0084 Score=48.17 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|.+|+||||+...|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999764
No 336
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.70 E-value=0.004 Score=56.19 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
-..+-+++|.||+||||||+.+.|+-
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHT
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHc
Confidence 34567899999999999999999985
No 337
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.69 E-value=0.0039 Score=56.49 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+|+|+|++||||||+.+.|...+
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 455689999999999999999998765
No 338
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.68 E-value=0.0034 Score=55.60 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=24.4
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.++.|+|++||||||+.+.|+.-+
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34566799999999999999999997644
No 339
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.67 E-value=0.0073 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
...|+|+|.+|+||||+.+.|...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999753
No 340
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.67 E-value=0.006 Score=48.23 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+.+.|..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999998853
No 341
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.008 Score=48.35 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|.+|+||||+...|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999764
No 342
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.66 E-value=0.008 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|+|.+|+||||+...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999864
No 343
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.64 E-value=0.0098 Score=46.54 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|+|.+|+||||+...|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999965
No 344
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.64 E-value=0.0086 Score=47.66 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|.+|+||||+.+.|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44578999999999999999998753
No 345
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.63 E-value=0.0077 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 46899999999999999998863
No 346
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=95.62 E-value=0.051 Score=48.01 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=49.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhCCcE-eehhHHHHHHHHcCCcchHHHHHHHHcCCCcChHHHHHHHHHHhcCCCCC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYGLVH-IAAGDLLRAEIAAGSENGKRAKEHMEKGQLVPDEIVVTMVKERLSQPDSQ 162 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~~~~-is~ddlir~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~i~~~~~~ 162 (284)
+..|+|.|| ||+|+.+.|.+.+.-.+ +.+. + . ..+.++.+++-+. +.+.+.+
T Consensus 145 ~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~--~----------~----r~i~~~~fis~~~----V~~vl~~---- 197 (308)
T 3kfv_A 145 KRPVVILGP---VADIAMQKLTAEMPDQFEIAET--V----------S----RTDSPSKIIKLDT----VRVIAEK---- 197 (308)
T ss_dssp CCCEEEEST---THHHHHHHHHHHCTTTEEECCC--C----------------------CCCHHH----HHHHHHT----
T ss_pred CCeEEEeCc---cHHHHHHHHHHhCccccccccc--c----------c----ccccCCCeecHHH----HHHHHHC----
Confidence 344888899 79999999988763222 2111 0 0 0134556664443 3444433
Q ss_pred CCeEEEeCcccCHHHHHHHHHcCCCCcEEEEEEc-CHHHHHHHHHcC
Q 023307 163 ENGWLLDGYPRSLSQATALKKYGFQPDLFILLEV-PEDTLVERVVGR 208 (284)
Q Consensus 163 ~~g~IlDg~p~~~~q~~~l~~~~~~~~~vI~L~~-~~e~~~~Rl~~R 208 (284)
++.+|||-.+....++ ......| ++|||.. +.+++.+| .+|
T Consensus 198 Gk~~ILDId~QGa~~l---k~~~~~p-i~IFI~PPS~eeL~~r-r~R 239 (308)
T 3kfv_A 198 DKHALLDVTPSAIERL---NYVQYYP-IVVFFIPESRPALKAL-RQW 239 (308)
T ss_dssp TCEEEECCCHHHHHHH---HHTTCCC-EEEEEEESCHHHHHHH-HHH
T ss_pred CCcEEEEECHHHHHHH---HhcCCCC-EEEEEeCCCHHHHHHH-Hhc
Confidence 8999999876544444 3333455 4555554 55666665 444
No 347
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.61 E-value=0.0071 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.++|.|++|+||||+++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 39999999999999999999875
No 348
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.0053 Score=57.52 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+.+++|.|+.||||||+++.|+..+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3466789999999999999999998643
No 349
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.61 E-value=0.0068 Score=47.80 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|+|.+|+||||+.+.|..
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHc
Confidence 3447899999999999999999874
No 350
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.60 E-value=0.0046 Score=50.61 Aligned_cols=25 Identities=12% Similarity=0.336 Sum_probs=21.7
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La 105 (284)
......|+|+|++||||||+.+.|.
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3456789999999999999999885
No 351
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.58 E-value=0.0088 Score=49.25 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|++|+||||+...|...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45578999999999999999999764
No 352
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.58 E-value=0.0088 Score=47.41 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=21.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
......|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhc
Confidence 34557899999999999999998875
No 353
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.58 E-value=0.0075 Score=48.58 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|+|.+|+||||+.+.|..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHc
Confidence 4457899999999999999999975
No 354
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.58 E-value=0.013 Score=52.47 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=25.0
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...+..+|+|+|++|+||||+...|+..+
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34667899999999999999999998654
No 355
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.57 E-value=0.0082 Score=48.80 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999998753
No 356
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.56 E-value=0.0084 Score=54.22 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=27.4
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---C--CcEeeh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY---G--LVHIAA 115 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ 115 (284)
-+.+.++.|.|+||+||||++..++..+ + +.+++.
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3456799999999999999999998754 2 346654
No 357
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.55 E-value=0.011 Score=50.31 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+..++++.|.+|+||||++..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998665
No 358
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.54 E-value=0.0077 Score=48.58 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=21.3
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.......|+|+|.+|+||||+...|..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 345567899999999999999998853
No 359
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.01 Score=48.08 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=22.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
......|+|+|.+|+||||+.+.|...
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999998753
No 360
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.53 E-value=0.0066 Score=53.89 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+.++++|+|+.||||||+.+.|...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 3568999999999999999999853
No 361
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.52 E-value=0.0066 Score=48.76 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~ 106 (284)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999875
No 362
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.52 E-value=0.0068 Score=61.05 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+..++|+|+||+||||+++.|++.+
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 344568999999999999999999987
No 363
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.52 E-value=0.0053 Score=49.57 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+.+.|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 364
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.51 E-value=0.0092 Score=48.41 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=20.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
......|+|+|.+|+||||+.+.|..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999998864
No 365
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.50 E-value=0.0081 Score=51.20 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=21.5
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
......|+|+|.+|+||||+...|..
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhC
Confidence 34567899999999999999998864
No 366
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.49 E-value=0.0089 Score=46.69 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999864
No 367
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.49 E-value=0.0041 Score=56.19 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+.+++|.||+||||||+.+.|+-
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhC
Confidence 4567899999999999999999985
No 368
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.49 E-value=0.0067 Score=48.21 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
+...|+|.|.+|+||||+...|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999999874
No 369
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.49 E-value=0.0093 Score=47.91 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|+|.+|+||||+...|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 4557899999999999999999864
No 370
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.48 E-value=0.011 Score=54.52 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
...-+|+|+||+||||||+.+.|...+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4456899999999999999999988763
No 371
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.48 E-value=0.0098 Score=46.96 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
+...|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999874
No 372
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.47 E-value=0.0088 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|+|.+|+||||+...|..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4568999999999999999998864
No 373
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.46 E-value=0.0096 Score=51.35 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
....|+|+|++||||||+.+.|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999643
No 374
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.45 E-value=0.01 Score=47.52 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|.+|+||||+.+.|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998643
No 375
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.45 E-value=0.011 Score=47.60 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+...|..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3457899999999999999999864
No 376
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.44 E-value=0.0073 Score=48.57 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+...|..
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999875
No 377
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.41 E-value=0.01 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...|+|+|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 36799999999999999999874
No 378
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.40 E-value=0.0047 Score=58.48 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
..|+|.|+||+|||++|+.|+..++
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4699999999999999999998774
No 379
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.39 E-value=0.0092 Score=48.99 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+.+.|..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHh
Confidence 4457899999999999999999875
No 380
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.39 E-value=0.011 Score=46.31 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La 105 (284)
..|+|.|.+|+||||+.+.|.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
No 381
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.38 E-value=0.0096 Score=46.54 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999998753
No 382
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.37 E-value=0.0096 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998864
No 383
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.37 E-value=0.011 Score=48.34 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=21.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+...|+|+|.+|+||||+...|..
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 35568999999999999999998874
No 384
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.36 E-value=0.0094 Score=47.47 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
...|+|+|.+|+||||+...|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999753
No 385
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.36 E-value=0.0081 Score=46.84 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|.|.+|+||||+...|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999875
No 386
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.35 E-value=0.011 Score=47.27 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.|+|+|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999998653
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.35 E-value=0.011 Score=47.29 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 86 KIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
+.+|+|+.||||||+.+.|.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 889999999999999999976554
No 388
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.35 E-value=0.011 Score=47.38 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|.+|+||||+.+.|...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998753
No 389
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.35 E-value=0.012 Score=51.82 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHhC--CcEeehh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKYG--LVHIAAG 116 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~~--~~~is~d 116 (284)
..++|.|++|+||||+++.+++..+ +.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 4899999999999999999998864 3455543
No 390
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.35 E-value=0.0086 Score=47.42 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999999875
No 391
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.35 E-value=0.01 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La 105 (284)
..|+|.|.+|+||||+.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 579999999999999999885
No 392
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.35 E-value=0.01 Score=47.17 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
+...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 446899999999999999998874
No 393
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.34 E-value=0.0087 Score=47.57 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La 105 (284)
.+...|+|+|.+|+||||+...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 566899999999999999998886
No 394
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.34 E-value=0.013 Score=51.50 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.+|+|+|++|+||||++..|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
No 395
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.34 E-value=0.0075 Score=48.39 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
....|+|.|.+|+||||+.+.|...+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999998887654
No 396
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.34 E-value=0.0092 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+.+.|..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 457899999999999999999875
No 397
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.30 E-value=0.011 Score=48.53 Aligned_cols=26 Identities=15% Similarity=0.091 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.+...|+|+|.+|+||||+...|...
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999998753
No 398
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.29 E-value=0.013 Score=58.12 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh---C--CcEeehhHH
Q 023307 86 KIMISGAPASGKGTQCELIKEKY---G--LVHIAAGDL 118 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~---~--~~~is~ddl 118 (284)
.++|.||||+|||++|+.|++.+ + +..+++.++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~ 560 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEY 560 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhc
Confidence 69999999999999999999986 2 455655444
No 399
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.29 E-value=0.013 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
...|+|+|.+|+||||+.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999998653
No 400
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.29 E-value=0.013 Score=47.52 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|.+|+||||+...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999998753
No 401
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.28 E-value=0.011 Score=47.20 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+...|..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999975
No 402
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.27 E-value=0.011 Score=47.56 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999999875
No 403
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.25 E-value=0.008 Score=55.82 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998765
No 404
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.23 E-value=0.018 Score=47.39 Aligned_cols=27 Identities=19% Similarity=0.023 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+..+++++|++|+||||.+-.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 345799999999999999998888776
No 405
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.23 E-value=0.01 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+.+.|..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 3346899999999999999998853
No 406
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.23 E-value=0.013 Score=55.34 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.++.+|+|+|.+|+||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999765
No 407
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.22 E-value=0.012 Score=49.32 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
+.+.+++|.|+||+|||++|..++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4556899999999999999987653
No 408
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.22 E-value=0.011 Score=47.84 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|+|.+|+||||+.+.|..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhc
Confidence 4457899999999999999999875
No 409
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.22 E-value=0.011 Score=53.50 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCeEEEE--EcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMI--SGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I--~G~pGsGKSTla~~La~~~ 108 (284)
.+..++| .|++|+||||+++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4567888 9999999999999998765
No 410
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.21 E-value=0.011 Score=48.26 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+...|..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhh
Confidence 3447899999999999999999864
No 411
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.20 E-value=0.011 Score=54.41 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....++.|.|++||||||++..|+-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHH
Confidence 4556899999999999999998763
No 412
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.19 E-value=0.012 Score=46.61 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+.+.|..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3446899999999999999998874
No 413
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.18 E-value=0.015 Score=57.66 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+..++|+|+||+|||++++.|++.+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999999876
No 414
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.17 E-value=0.011 Score=48.22 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+.+.|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh
Confidence 3457899999999999999998863
No 415
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.17 E-value=0.012 Score=53.04 Aligned_cols=35 Identities=26% Similarity=0.079 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~d 116 (284)
+.+.++.|.|+||+||||+|..++... .+.++++.
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 456789999999999999999988643 34566643
No 416
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.16 E-value=0.007 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.+++|+|++||||||+.+.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998755
No 417
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.12 E-value=0.013 Score=47.36 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
+...|+|.|.+|+||||+.+.|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999999975
No 418
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.11 E-value=0.015 Score=46.42 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|.|.+|+||||+.+.|..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999864
No 419
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.09 E-value=0.02 Score=48.38 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh---CCc--Eeehh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY---GLV--HIAAG 116 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~---~~~--~is~d 116 (284)
...+|++.|++|+||||++-.++..+ |.. ++++|
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D 43 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVE 43 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 34689999999999999988887654 543 44554
No 420
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.014 Score=46.17 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
....|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4468999999999999999998753
No 421
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.08 E-value=0.011 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La 105 (284)
.....|+|+|.+|+||||+.+.|.
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999884
No 422
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.08 E-value=0.013 Score=47.29 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.....|+|+|.+|+||||+.+.|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 44578999999999999999998753
No 423
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.08 E-value=0.013 Score=53.08 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+.+++|+|++|+||||+.+.|..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCEEEEECCCCccHHHHHHHHhc
Confidence 346899999999999999999974
No 424
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.07 E-value=0.016 Score=46.36 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|.|.+|+||||+.+.|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4568999999999999999999974
No 425
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.05 E-value=0.016 Score=52.02 Aligned_cols=27 Identities=11% Similarity=-0.071 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-+.+.++.|.|+||+||||+|..|+..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456779999999999999999999875
No 426
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.04 E-value=0.012 Score=56.08 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=24.0
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
.+..+.++.|+|+.||||||+.+.|+-.
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3456689999999999999999999754
No 427
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.03 E-value=0.017 Score=44.91 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q 023307 86 KIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~ 107 (284)
.|+|.|.+|+||||+.+.|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999754
No 428
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.03 E-value=0.016 Score=46.85 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La 105 (284)
.+...|+|+|.+|+||||+...|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999885
No 429
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.03 E-value=0.013 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+.+|+++|++|+||||++..|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998766
No 430
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.02 E-value=0.014 Score=51.38 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La 105 (284)
...+++|.|++|+||||+.+.|.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 431
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.02 E-value=0.014 Score=51.41 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~d 116 (284)
....|+|.|+||+|||++|+.|++.. .+..++..
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 34569999999999999999999854 24556543
No 432
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.00 E-value=0.015 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...++.|+|++||||||+.+.|..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 345999999999999999999986
No 433
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.00 E-value=0.014 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~ 106 (284)
..|+|+|.+|+||||+...|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999874
No 434
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.011 Score=47.30 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
....|+|+|.+|+||||+...|...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 4478999999999999999999753
No 435
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.99 E-value=0.015 Score=47.32 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|+|.+|+||||+.+.|..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4557899999999999999998853
No 436
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.96 E-value=0.011 Score=57.10 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 84 PLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
...++|.|++|+||||+++.|+..++
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 35799999999999999999998764
No 437
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.95 E-value=0.015 Score=47.57 Aligned_cols=25 Identities=20% Similarity=0.116 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|.|.+|+||||+...|..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHhc
Confidence 4457899999999999999999875
No 438
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.91 E-value=0.015 Score=47.33 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+...|..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999875
No 439
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.89 E-value=0.011 Score=52.35 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEeehhHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIAAGDL 118 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is~ddl 118 (284)
.+.-|+|.|++|+||||+|-.|.+ .|...++ ||.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~-DD~ 179 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVG-DDA 179 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEE-EEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe-CCE
Confidence 456799999999999999999865 5877776 443
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.88 E-value=0.017 Score=47.65 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|+|.+|+||||+...|..
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC
T ss_pred cceEEEEEECcCCCCHHHHHHHHHc
Confidence 3457899999999999999998863
No 441
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.85 E-value=0.016 Score=58.39 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..++|.|++|+|||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999987
No 442
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.85 E-value=0.019 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.411 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+...|..
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhC
Confidence 4457899999999999999999874
No 443
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.84 E-value=0.017 Score=52.14 Aligned_cols=34 Identities=24% Similarity=0.098 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeeh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAA 115 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~ 115 (284)
+.+.+++|.|+||+||||+|..|+... .+.++++
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456789999999999999999988653 3556765
No 444
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.84 E-value=0.011 Score=56.08 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+..|+|+|++||||||+.+.|...+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345579999999999999999998654
No 445
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.83 E-value=0.018 Score=53.27 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.7
Q ss_pred hhccCCCeE--EEEEcCCCCCHHHHHHHHHH
Q 023307 78 ASATVEPLK--IMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 78 ~~~~~~~~~--I~I~G~pGsGKSTla~~La~ 106 (284)
...-..+.+ ++|+|++||||||+.+.|+.
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 334445556 99999999999999999974
No 446
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.80 E-value=0.017 Score=51.30 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
+.+.++.|.|+||+||||+|..|+...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 456799999999999999999998753
No 447
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.80 E-value=0.023 Score=52.70 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..+.+|+|+|+.|+||||++-.|+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998655
No 448
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.73 E-value=0.022 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+||||+...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999874
No 449
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.73 E-value=0.023 Score=52.62 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+.+|+|+|+.|+||||++..|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999776
No 450
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.69 E-value=0.019 Score=50.81 Aligned_cols=26 Identities=15% Similarity=-0.018 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+.+.+++|.|+||+||||+|..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999864
No 451
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.69 E-value=0.019 Score=51.61 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=26.6
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
..-.++.++.|.|++||||||+.+.|+....
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4446778999999999999999999998764
No 452
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.67 E-value=0.018 Score=54.87 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+-+++|+|+.||||||+.+.|+-.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45568999999999999999999853
No 453
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.66 E-value=0.018 Score=50.58 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+++|.|++||||||+.+.|+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHST
T ss_pred CCeEEEECCCCCcHHHHHHHhcc
Confidence 46899999999999999999964
No 454
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.66 E-value=0.022 Score=46.18 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...|+|+|.+|+||||+...|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999864
No 455
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.64 E-value=0.018 Score=55.35 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=25.1
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..-..+.++.|+|++||||||+.+.|+.-+
T Consensus 364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334566789999999999999999998654
No 456
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.62 E-value=0.025 Score=50.03 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+-+++|.|.||+||||++..++...
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4556799999999999999999988653
No 457
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.62 E-value=0.019 Score=49.28 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q 023307 85 LKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+.|+|+|.+||||||+...|...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999653
No 458
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.61 E-value=0.021 Score=53.13 Aligned_cols=31 Identities=6% Similarity=0.020 Sum_probs=26.7
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHHHhC
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKEKYG 109 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~~~~ 109 (284)
..-.++.++.|.|++||||||+.+.|+....
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4456778999999999999999999998763
No 459
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.60 E-value=0.025 Score=46.66 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.....|+|+|.+|+||||+...|..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEECcCCCCHHHHHHHHhc
Confidence 3457899999999999999999875
No 460
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.57 E-value=0.028 Score=49.84 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCcEee
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKYGLVHIA 114 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~~~~~is 114 (284)
.+.-++|.|++|+||||++..|.++ |..+++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~ 173 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVA 173 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceec
Confidence 3567999999999999999999774 877775
No 461
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.57 E-value=0.023 Score=51.46 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
..++..|+|.|.+||||||+++.+.--+
T Consensus 30 ~~~~~killlG~~~SGKST~~kq~~i~~ 57 (362)
T 1zcb_A 30 SARLVKILLLGAGESGKSTFLKQMRIIH 57 (362)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCccEEEEECCCCCcHHHHHHHHHHHh
Confidence 3567899999999999999999985444
No 462
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.56 E-value=0.025 Score=48.98 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+...|+|+|.+|+||||+...|...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999753
No 463
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.56 E-value=0.017 Score=55.60 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=24.6
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.++.|+|++||||||+.+.|+.-+
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34566789999999999999999998654
No 464
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.55 E-value=0.019 Score=53.91 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 85 LKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 85 ~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.+++|+|++||||||+.+.|+--+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 689999999999999999998654
No 465
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.51 E-value=0.024 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Q 023307 86 KIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.++|.|++|+||||++..+++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998776
No 466
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.49 E-value=0.025 Score=47.03 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
....|+|+|.+|+|||||..+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999998863
No 467
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.49 E-value=0.02 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
+...|+|+|.+|+||||+...|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHC
Confidence 346899999999999999999975
No 468
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.49 E-value=0.024 Score=54.47 Aligned_cols=26 Identities=19% Similarity=0.422 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
...+++|.|+||+||||++..|...+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999988754
No 469
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.45 E-value=0.02 Score=45.87 Aligned_cols=24 Identities=13% Similarity=0.272 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La 105 (284)
.+...|+|+|.+|+||||+...|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999884
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.44 E-value=0.019 Score=54.42 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.4
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHH
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELI 104 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~L 104 (284)
.-..+-+++|.|++||||||+++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3356679999999999999999994
No 471
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.43 E-value=0.019 Score=47.35 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHH-HHHHhC
Q 023307 82 VEPLKIMISGAPASGKGTQCEL-IKEKYG 109 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~-La~~~~ 109 (284)
.....|+|+|.+|+||||+.+. +...+.
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~ 41 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFE 41 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 3457899999999999999998 555543
No 472
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.39 E-value=0.027 Score=48.86 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...|+|+|.||+||||+.+.|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46899999999999999999975
No 473
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.38 E-value=0.013 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=10.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...|+|+|.+|+||||+...|..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998864
No 474
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.35 E-value=0.023 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...|+|+|++|+||||+.+.|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999753
No 475
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.34 E-value=0.029 Score=45.47 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
...|+|+|.+|+||||+..+|...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999754
No 476
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.31 E-value=0.031 Score=52.01 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
-..+-+++|.|+||+||||++..|+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 455679999999999999999988764
No 477
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.30 E-value=0.024 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
+..+|+|+|.||+||||+.+.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 445899999999999999999964
No 478
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.026 Score=54.61 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+.++.|+|+.||||||+.+.|+-.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 45679999999999999999999853
No 479
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.27 E-value=0.021 Score=54.43 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+-+++|+|+.||||||+.+.|+.-
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999853
No 480
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.24 E-value=0.011 Score=48.58 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=20.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La 105 (284)
......|+|+|.+|+||||+...|.
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHh
Confidence 3455789999999999999998886
No 481
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.20 E-value=0.033 Score=44.74 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
....|+|+|.+|+||||+.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999754
No 482
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.19 E-value=0.026 Score=49.64 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
.+...|+|+|.||+||||+...|..
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445799999999999999999864
No 483
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.18 E-value=0.036 Score=43.43 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 84 PLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 84 ~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+.+.+|+|+.|+||||+...|.-.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999888643
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.17 E-value=0.027 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+-++.|+|+.||||||+.+.|+-.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999999863
No 485
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.15 E-value=0.017 Score=55.66 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=24.5
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.++.|+|++||||||+.+.|+.-+
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 34566789999999999999999997644
No 486
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.14 E-value=0.025 Score=52.60 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=21.0
Q ss_pred hccCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 79 SATVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 79 ~~~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...+..++|+|+|.||+||||+...|..
T Consensus 18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 18 GSHMGKPVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp -----CCEEEEECSSSSSHHHHHHHHEE
T ss_pred hhhcCCCEEEEECCCCCcHHHHHHHHhC
Confidence 3445567999999999999999999864
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.04 E-value=0.029 Score=53.20 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=23.8
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
-..+-+++|.|++||||||+++.|+...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998654
No 488
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.03 E-value=0.011 Score=52.32 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
...+++|+|++|+||||+.+.|..
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcc
Confidence 356899999999999999999863
No 489
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.00 E-value=0.02 Score=55.24 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=24.5
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.++.|+|++||||||+.+.|+.-+
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34566799999999999999999997644
No 490
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.99 E-value=0.0046 Score=50.34 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Q 023307 83 EPLKIMISGAPASGKGTQCELIK 105 (284)
Q Consensus 83 ~~~~I~I~G~pGsGKSTla~~La 105 (284)
....|+|+|.+|+||||+.+.|.
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSB
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 35789999999999999998774
No 491
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.98 E-value=0.03 Score=49.34 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.0
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
++.+-.|+|+|.||+||||+...|..
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 34456899999999999999999864
No 492
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.95 E-value=0.018 Score=47.46 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
...+.|+|+|.+|+||||+...|...
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 34578999999999999999988653
No 493
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.95 E-value=0.037 Score=49.28 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
+++ ++.|.|+||+||||+|..++..
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 445 7999999999999998777643
No 494
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.92 E-value=0.035 Score=50.30 Aligned_cols=35 Identities=23% Similarity=0.102 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh-----CCcEeehh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY-----GLVHIAAG 116 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~-----~~~~is~d 116 (284)
+.+.+++|.|+||+||||+|..|+... .+.++++.
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456689999999999999999887653 35667654
No 495
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.92 E-value=0.032 Score=53.97 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEK 107 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~ 107 (284)
..+-++.|.|+.||||||+.+.|+-.
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999999853
No 496
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.90 E-value=0.012 Score=56.80 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCcE
Q 023307 86 KIMISGAPASGKGTQCELIKEKYGLVH 112 (284)
Q Consensus 86 ~I~I~G~pGsGKSTla~~La~~~~~~~ 112 (284)
.|+|.|+||+|||++|+.|++.++...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~ 355 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAV 355 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCce
Confidence 699999999999999999998775433
No 497
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.88 E-value=0.018 Score=55.43 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=24.5
Q ss_pred ccCCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 80 ATVEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 80 ~~~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
.-..+.++.|+|++||||||+.+.|..-+
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 34566799999999999999999997654
No 498
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.86 E-value=0.057 Score=45.13 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKEKY 108 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~~~ 108 (284)
....+.+++|++|+||||.+-.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 446799999999999999998887766
No 499
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=93.85 E-value=0.038 Score=50.59 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q 023307 82 VEPLKIMISGAPASGKGTQCELIKE 106 (284)
Q Consensus 82 ~~~~~I~I~G~pGsGKSTla~~La~ 106 (284)
..+..|.|+|+||+||||+.+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3457899999999999999999987
No 500
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.84 E-value=0.059 Score=47.05 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=26.3
Q ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHh---CC--cEeehh
Q 023307 81 TVEPLKIMISGAPASGKGTQCELIKEKY---GL--VHIAAG 116 (284)
Q Consensus 81 ~~~~~~I~I~G~pGsGKSTla~~La~~~---~~--~~is~d 116 (284)
...+++|.|+|..|+||||++-.|+..+ |. .++|+|
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3456788888999999999998888765 44 445554
Done!