Query 023308
Match_columns 284
No_of_seqs 198 out of 1657
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 04:38:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 100.0 1.1E-54 3.6E-59 397.0 20.0 260 8-267 6-274 (340)
2 3cn5_A Aquaporin; membrane pro 100.0 1.8E-53 6.3E-58 386.4 13.4 260 4-265 9-290 (304)
3 2w2e_A AQY1, aquaporin, aquapo 100.0 4.3E-52 1.5E-56 374.0 19.8 223 47-271 41-273 (279)
4 3gd8_A Aquaporin-4; proton exc 100.0 2.3E-51 7.8E-56 359.0 15.9 215 49-263 2-222 (223)
5 3llq_A Aquaporin Z 2; aquapori 100.0 2.6E-51 8.8E-56 364.0 15.5 213 49-262 28-253 (256)
6 2zz9_A Aquaporin-4; water tran 100.0 8.7E-51 3E-55 368.1 19.0 223 44-266 6-234 (301)
7 1j4n_A Aquaporin 1; membrane p 100.0 1E-50 3.5E-55 364.3 17.4 222 45-266 5-237 (271)
8 2b6o_A Aquaporin-0, lens fiber 100.0 6.1E-50 2.1E-54 357.8 19.6 219 45-265 4-226 (263)
9 2o9g_A Aquaporin Z; integral m 100.0 2.3E-50 7.9E-55 355.2 16.1 214 49-263 3-231 (234)
10 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 6.1E-50 2.1E-54 358.0 16.3 220 45-266 6-230 (266)
11 1ldf_A Glycerol uptake facilit 100.0 7E-50 2.4E-54 360.9 15.2 220 48-267 5-260 (281)
12 3c02_A Aquaglyceroporin; membr 100.0 6.5E-50 2.2E-54 357.0 11.4 225 48-272 7-252 (258)
13 2f2b_A Aquaporin AQPM; protein 100.0 2.3E-48 7.8E-53 345.1 17.6 215 49-263 3-245 (246)
14 2f2b_A Aquaporin AQPM; protein 99.6 6.4E-15 2.2E-19 130.2 10.0 100 48-152 141-245 (246)
15 2b6o_A Aquaporin-0, lens fiber 99.5 9.7E-15 3.3E-19 130.1 6.9 100 166-265 8-111 (263)
16 3llq_A Aquaporin Z 2; aquapori 99.4 8.1E-14 2.8E-18 123.3 5.5 99 165-263 27-132 (256)
17 2zz9_A Aquaporin-4; water tran 99.4 2.4E-13 8.2E-18 122.9 7.3 100 166-265 11-118 (301)
18 3d9s_A Aquaporin-5, AQP-5; aqu 99.4 1.1E-13 3.8E-18 123.3 4.8 98 166-263 10-111 (266)
19 3iyz_A Aquaporin-4; water tran 99.4 2E-13 6.8E-18 124.7 4.3 100 166-265 50-157 (340)
20 1j4n_A Aquaporin 1; membrane p 99.4 3.3E-13 1.1E-17 120.6 4.9 99 166-264 9-120 (271)
21 3gd8_A Aquaporin-4; proton exc 99.3 5.5E-13 1.9E-17 116.0 5.4 98 167-264 3-108 (223)
22 1ldf_A Glycerol uptake facilit 99.3 7.4E-13 2.5E-17 119.0 6.2 100 166-265 6-111 (281)
23 3c02_A Aquaglyceroporin; membr 99.3 6.2E-13 2.1E-17 118.1 5.6 99 166-264 8-112 (258)
24 3cn5_A Aquaporin; membrane pro 99.3 4.8E-13 1.6E-17 121.1 4.9 99 166-264 59-166 (304)
25 2o9g_A Aquaporin Z; integral m 99.3 3.8E-12 1.3E-16 111.5 7.8 100 48-153 132-232 (234)
26 2w2e_A AQY1, aquaporin, aquapo 99.3 1.4E-11 4.7E-16 110.5 9.7 99 49-152 167-265 (279)
27 3kcu_A Probable formate transp 94.9 0.97 3.3E-05 40.0 15.2 98 87-188 71-182 (285)
28 3kly_A Putative formate transp 90.5 0.65 2.2E-05 41.0 7.3 137 48-188 28-181 (280)
29 4fc4_A Nitrite transporter NIR 85.0 0.61 2.1E-05 40.8 3.5 99 87-188 61-171 (261)
30 3tds_E Formate/nitrite transpo 77.0 0.93 3.2E-05 39.8 1.8 99 87-188 67-177 (268)
31 3s2u_A UDP-N-acetylglucosamine 40.2 2.5 8.7E-05 38.0 -2.5 22 102-123 8-29 (365)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-54 Score=396.97 Aligned_cols=260 Identities=28% Similarity=0.392 Sum_probs=214.8
Q ss_pred CCCCcccceeccccccccCCCCCCCCCCCCCCCC---CCcccchHHHHHHHHHHHHHHHHHHHhhhhhhhcc--cCCCcc
Q 023308 8 GSNGVCVTFKDCEDAIQNCPSSAAPPPPPSCGTK---DSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNL--NNEKIV 82 (284)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~--~~~~~~ 82 (284)
|..|||-+++..-+.+-+++++.++++.|+.... .++.+..+++|++++||+|||+|+|++|++++... ......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~ 85 (340)
T 3iyz_A 6 HHHHHHGMASMTGGQQMGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPV 85 (340)
T ss_pred ccccccchhhcChhhhcCCCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Confidence 4445555555555544467888888888877532 34556678999999999999999999999876432 122234
Q ss_pred CchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhcccccccc--
Q 023308 83 SLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG-- 160 (284)
Q Consensus 83 ~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~-- 160 (284)
+++.++++||+++++.+++++++||||+|||||+++++.|+++|.+++.||++|++||++|+++++.++++......+
T Consensus 86 g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~ 165 (340)
T 3iyz_A 86 DMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVT 165 (340)
T ss_pred chHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeec
Confidence 577899999999999999999999999999999999999999999999999999999999999999988654322111
Q ss_pred -cCCCCcchhhHHHHHHHHHHHHHHHhhhcccccc-ccchhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhhCCC
Q 023308 161 -TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA-IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYK 238 (284)
Q Consensus 161 -~~p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~-~~~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~ 238 (284)
+.+..+..++|+.|+++||+|+++++++.++++. .....|+.||+++.+.+..++++||++|||||+|||+++.++|.
T Consensus 166 ~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~ 245 (340)
T 3iyz_A 166 TVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWE 245 (340)
T ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCCcccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHccCCC
Confidence 2344578899999999999999999997544443 23578999999998888888899999999999999999999999
Q ss_pred ceeeeeecchHHHHHHHHHHHHHhcCCCc
Q 023308 239 GLWIYIVAPPLGATAGAWVYNMVRYTDKP 267 (284)
Q Consensus 239 ~~wvy~v~p~~Ga~la~~l~~~~~~~~~~ 267 (284)
++||||++|++|+++|+++|++++.++.+
T Consensus 246 ~~WVywvgPiiGailaallY~~l~~p~~~ 274 (340)
T 3iyz_A 246 NHWIYWVGPIIGAVLAGALYEYVFCPDVE 274 (340)
T ss_pred cEeehhHHHHHHHHHHHHHHHHHhCCChh
Confidence 99999999999999999999999866543
No 2
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=1.8e-53 Score=386.37 Aligned_cols=260 Identities=27% Similarity=0.429 Sum_probs=188.5
Q ss_pred CCCCCCCCccc----ceeccccccc---cCCCCCCCCCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Q 023308 4 NSGTGSNGVCV----TFKDCEDAIQ---NCPSSAAPPPPPSCGTKDSVYFSVPFMQKLMAEILGTYFMIFAGCASVVVNL 76 (284)
Q Consensus 4 ~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~ 76 (284)
||+++-|.++- +++|+|+..| +.+|+++||+.|..+.+ +..+.+++|++++||+|||+|+|++|++++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~ 86 (304)
T 3cn5_A 9 SSGLVPRGSHMLEDLMSKEVSEEAQAHQHGKDYVDPPPAPFFDLG--ELKLWSFWRAAIAEFIATLLFLYITVATVIGHS 86 (304)
T ss_dssp ------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCcCchhHHHHHHHHHhhccccccccCCCccCCCcccccCcc--ccccHHHHHHHHHHHHHHHHHHHHHhHHHeEec
Confidence 45555555543 4466655432 34788888888888754 445568999999999999999999999876432
Q ss_pred ---cCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhc
Q 023308 77 ---NNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE 153 (284)
Q Consensus 77 ---~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~ 153 (284)
+.....+++.++++||+++++.+++++++||||+|||||+++++.|+++|++++.||++|++||++|+++++.++++
T Consensus 87 ~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~ 166 (304)
T 3cn5_A 87 KETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKG 166 (304)
T ss_dssp TCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cccCCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 12233457789999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cccccc-c---cCCCCcchhhHHHHHHHHHHHHHHHhhhccccccc-cc----hhhHHHHHHHHHHHHHhcCCccCccch
Q 023308 154 KQDQFA-G---TLPAGSNIQAFVMEFIITFYLMFVISGVATDNRAI-GE----LAGLAVGSTVLLNVMFAGPITGASMNP 224 (284)
Q Consensus 154 ~~~~~~-~---~~p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~-~~----~~~l~ig~~v~~~~~~~~~~tG~~lNP 224 (284)
...... + ..+..+..++|+.|+++||+|+++++...++++.. +. +.|+.||+++++.+++.+++||+++||
T Consensus 167 ~~~~~~~g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNP 246 (304)
T 3cn5_A 167 PYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINP 246 (304)
T ss_dssp HHHHTTTTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred hhhhccCcccccCCCccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccCh
Confidence 422111 1 12344778999999999999999999754323322 22 789999999999999999999999999
Q ss_pred hhhHHHHHh---hhCCCceeeeeecchHHHHHHHHHHHHHhcCC
Q 023308 225 ARSLGPAIV---SSQYKGLWIYIVAPPLGATAGAWVYNMVRYTD 265 (284)
Q Consensus 225 Ar~lg~~l~---~~~~~~~wvy~v~p~~Ga~la~~l~~~~~~~~ 265 (284)
||+|||+++ .+.|.++|+||++|++|+++|+++|++++.+.
T Consensus 247 AR~~GPal~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~ 290 (304)
T 3cn5_A 247 ARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAA 290 (304)
T ss_dssp HHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCCC
Confidence 999999999 66899999999999999999999999987543
No 3
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=4.3e-52 Score=374.00 Aligned_cols=223 Identities=23% Similarity=0.338 Sum_probs=192.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhhhh-cc------cCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHH
Q 023308 47 SVPFMQKLMAEILGTYFMIFAGCASVVV-NL------NNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHA 119 (284)
Q Consensus 47 ~~~~~~~~~~EfigT~~lv~~~~~~~~~-~~------~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~ 119 (284)
.++.+|++++||+|||+|+++++++... +. ..+...+++.++++||+++++.+++++++||||+|||||++++
T Consensus 41 ~~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 120 (279)
T 2w2e_A 41 VRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALV 120 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHH
Confidence 3578899999999999999999986432 11 1112234667899999999999999999999999999999999
Q ss_pred HhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhcccccccccCC--CCcchhhHHHHHHHHHHHHHHHhhhccccccccc
Q 023308 120 TCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLP--AGSNIQAFVMEFIITFYLMFVISGVATDNRAIGE 197 (284)
Q Consensus 120 l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~p--~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~ 197 (284)
+.|+++|++++.|+++|++||++|+++++.++++... ..+.| ..+..++++.|+++||+|+++++.+..++++...
T Consensus 121 ~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~--~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~~~~ 198 (279)
T 2w2e_A 121 LARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIA--FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRATW 198 (279)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC--CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCSTTGG
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccce--eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 9999999999999999999999999999999975432 23444 3477899999999999999999998766655566
Q ss_pred hhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhhCC-CceeeeeecchHHHHHHHHHHHHHhcCCCccccc
Q 023308 198 LAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQY-KGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREI 271 (284)
Q Consensus 198 ~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~-~~~wvy~v~p~~Ga~la~~l~~~~~~~~~~~~~~ 271 (284)
+.|+.||+++.+.+++.++.||++|||||+|||+++.+.| .++||||++|++|+++|+++|+++...+.++..+
T Consensus 199 ~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~~~~~p 273 (279)
T 2w2e_A 199 FAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTNP 273 (279)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCSCC
T ss_pred cHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCC
Confidence 8999999999999999999999999999999999999765 5899999999999999999999998776655433
No 4
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-51 Score=358.98 Aligned_cols=215 Identities=32% Similarity=0.480 Sum_probs=186.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcc--cCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCCC
Q 023308 49 PFMQKLMAEILGTYFMIFAGCASVVVNL--NNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPW 126 (284)
Q Consensus 49 ~~~~~~~~EfigT~~lv~~~~~~~~~~~--~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~~ 126 (284)
++||++++||+||++|++++|++++... .++...+++.++++||+++.+.+++++++||||+|||||+++++.|+++|
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 81 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCCH
Confidence 5899999999999999999999876421 22233467789999999999999999999999999999999999999999
Q ss_pred CcccchhhhhhhHHHHHHHHHHHHhhcccccc---cccCCCCcchhhHHHHHHHHHHHHHHHhhhcccccc-ccchhhHH
Q 023308 127 KQVPPYILCQVLGSTLAAGTLRLLFQEKQDQF---AGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA-IGELAGLA 202 (284)
Q Consensus 127 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~---~~~~p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~-~~~~~~l~ 202 (284)
++++.|+++|++||++|+.+++.+++++.... ..+.|..+..++++.|+++||+|+++++.+.++++. .....|+.
T Consensus 82 ~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~pl~ 161 (223)
T 3gd8_A 82 AKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALA 161 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCccCCccHH
Confidence 99999999999999999999999886532211 123445578899999999999999999997544443 24578999
Q ss_pred HHHHHHHHHHHhcCCccCccchhhhHHHHHhhhCCCceeeeeecchHHHHHHHHHHHHHhc
Q 023308 203 VGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRY 263 (284)
Q Consensus 203 ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~la~~l~~~~~~ 263 (284)
||+++.+.+...++.||++|||||||||+++.++|+++|+||++|++|+++|+++|++++.
T Consensus 162 iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~ 222 (223)
T 3gd8_A 162 IGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFC 222 (223)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcC
Confidence 9999988888888899999999999999999999999999999999999999999998874
No 5
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=2.6e-51 Score=364.04 Aligned_cols=213 Identities=33% Similarity=0.652 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccc-CCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCCCC
Q 023308 49 PFMQKLMAEILGTYFMIFAGCASVVVNLN-NEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK 127 (284)
Q Consensus 49 ~~~~~~~~EfigT~~lv~~~~~~~~~~~~-~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~~~ 127 (284)
+++|++++||+|||+|++++|++.+.... ++...+++.++++||+++++.+++++++||||+|||||+++++.|+++|+
T Consensus 28 ~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 107 (256)
T 3llq_A 28 VMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPAS 107 (256)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcCCCHH
Confidence 57899999999999999999998764432 23345678899999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhHHHHHHHHHHHHhhcccc---------cccccCCC-CcchhhHHHHHHHHHHHHHHHhhhccccccccc
Q 023308 128 QVPPYILCQVLGSTLAAGTLRLLFQEKQD---------QFAGTLPA-GSNIQAFVMEFIITFYLMFVISGVATDNRAIGE 197 (284)
Q Consensus 128 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~---------~~~~~~p~-~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~~~ 197 (284)
+++.|+++|++||++|+++++.++++... ....+.|. .+..++++.|+++||+|+++++.+ .|+++...
T Consensus 108 ~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~-~d~~~~~~ 186 (256)
T 3llq_A 108 SLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGS-THGRVPAG 186 (256)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHH-HSTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcc
Confidence 99999999999999999999998853210 11224554 377899999999999999999986 45555556
Q ss_pred hhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhhC--CCceeeeeecchHHHHHHHHHHHHHh
Q 023308 198 LAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQ--YKGLWIYIVAPPLGATAGAWVYNMVR 262 (284)
Q Consensus 198 ~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~--~~~~wvy~v~p~~Ga~la~~l~~~~~ 262 (284)
+.|+.||+++.+..++.++.||++|||||+|||+++.++ |.++||||++|++|+++|+++|+++.
T Consensus 187 ~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 187 FAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999754 56899999999999999999999885
No 6
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=8.7e-51 Score=368.08 Aligned_cols=223 Identities=33% Similarity=0.497 Sum_probs=188.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhhhhhccc--CCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHh
Q 023308 44 VYFSVPFMQKLMAEILGTYFMIFAGCASVVVNLN--NEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATC 121 (284)
Q Consensus 44 ~~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~--~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~ 121 (284)
+..+.+++|++++||+|||+|+++++++.+.... ++...+++.++++||+++++.+++++++||||+|||||+++++.
T Consensus 6 ~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~ 85 (301)
T 2zz9_A 6 GVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCT 85 (301)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHHh
Confidence 3445689999999999999999999998764322 12234567789999999999999999999999999999999999
Q ss_pred cCCCCCcccchhhhhhhHHHHHHHHHHHHhhcccccccc-c--CCCCcchhhHHHHHHHHHHHHHHHhhhcccccc-ccc
Q 023308 122 KRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG-T--LPAGSNIQAFVMEFIITFYLMFVISGVATDNRA-IGE 197 (284)
Q Consensus 122 g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~-~--~p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~-~~~ 197 (284)
|+++|.+++.||++|++||++|+++++.++++......+ + .+..+..++|+.|+++||+|+++++++.++++. ...
T Consensus 86 g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~~~~ 165 (301)
T 2zz9_A 86 RKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTG 165 (301)
T ss_dssp SSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGGTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSSCCSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Confidence 999999999999999999999999999998754322111 2 233477899999999999999999997544443 245
Q ss_pred hhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhhCCCceeeeeecchHHHHHHHHHHHHHhcCCC
Q 023308 198 LAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDK 266 (284)
Q Consensus 198 ~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~la~~l~~~~~~~~~ 266 (284)
+.|+.||+++.+.++.++++||++|||||+|||+++.++|.++|+||++|++|+++|+++|++++.++.
T Consensus 166 ~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~~w~~~WVy~vgPiiGailaa~ly~~l~~~~~ 234 (301)
T 2zz9_A 166 SVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDV 234 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred hHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhCCCcceeeeeeHHHHHHHHHHHHHHHHhCCch
Confidence 789999999988888888999999999999999999999999999999999999999999999976443
No 7
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=1e-50 Score=364.33 Aligned_cols=222 Identities=27% Similarity=0.439 Sum_probs=189.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhhhhcc-------cCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHH
Q 023308 45 YFSVPFMQKLMAEILGTYFMIFAGCASVVVNL-------NNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIA 117 (284)
Q Consensus 45 ~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~-------~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla 117 (284)
..+.+++|++++||+||++|+|++|++.+... ..+...+++.++++||+++++.+++++++||||+|||||++
T Consensus 5 ~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTla 84 (271)
T 1j4n_A 5 FKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLG 84 (271)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHHHH
Confidence 34467899999999999999999999876422 11122346789999999999999999999999999999999
Q ss_pred HHHhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhccccccc---ccCCCCcchhhHHHHHHHHHHHHHHHhhhcccccc
Q 023308 118 HATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFA---GTLPAGSNIQAFVMEFIITFYLMFVISGVATDNRA 194 (284)
Q Consensus 118 ~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~---~~~p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~ 194 (284)
+++.|+++|++++.||++|++||++|+++++.++++...... .+.|..+..++++.|+++||+|+++++++.++++.
T Consensus 85 ~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~d~~~~ 164 (271)
T 1j4n_A 85 LLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRR 164 (271)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccCCCccchHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 999999999999999999999999999999999864332222 23455577899999999999999999987533332
Q ss_pred -ccchhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhhCCCceeeeeecchHHHHHHHHHHHHHhcCCC
Q 023308 195 -IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDK 266 (284)
Q Consensus 195 -~~~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~la~~l~~~~~~~~~ 266 (284)
...+.|+.||+++.+.++.+++.||++|||||+|||+++.++|.++|+||++|++|+++|+++|++++.++.
T Consensus 165 ~~~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~~~~~~wv~~vgP~~Ga~la~~~y~~~~~~~~ 237 (271)
T 1j4n_A 165 DLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRS 237 (271)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred CccccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhCCCcceeHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 246899999999998888888899999999999999999999999999999999999999999999987654
No 8
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=6.1e-50 Score=357.81 Aligned_cols=219 Identities=29% Similarity=0.470 Sum_probs=189.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCC
Q 023308 45 YFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRF 124 (284)
Q Consensus 45 ~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~ 124 (284)
..+.+++|++++||+|||+|+++++++.... .+...+++.++++||+++++.+++++++||||+|||||+++++.|++
T Consensus 4 ~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~--~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~g~~ 81 (263)
T 2b6o_A 4 LRSASFWRAIFAEFFATLFYVFFGLGASLRW--APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQM 81 (263)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHTTCS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHhcCC
Confidence 3456789999999999999999999987532 22223566789999999999999999999999999999999999999
Q ss_pred CCCcccchhhhhhhHHHHHHHHHHHHhhcccccccc---cCCCCcchhhHHHHHHHHHHHHHHHhhhccccc-cccchhh
Q 023308 125 PWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLPAGSNIQAFVMEFIITFYLMFVISGVATDNR-AIGELAG 200 (284)
Q Consensus 125 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~---~~p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~-~~~~~~~ 200 (284)
+|.+++.|+++|++||++|+.+++.++++......+ +.|..+..++++.|+++||+|+++++.+.++++ ....+.|
T Consensus 82 ~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~~~~~p 161 (263)
T 2b6o_A 82 SLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVA 161 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSSCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTSCSSCCCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccHH
Confidence 999999999999999999999999999754322222 334557889999999999999999999843333 2346889
Q ss_pred HHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhhCCCceeeeeecchHHHHHHHHHHHHHhcCC
Q 023308 201 LAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTD 265 (284)
Q Consensus 201 l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~la~~l~~~~~~~~ 265 (284)
+.||+++.+.+++.+++||++|||||+|||+++.++|.++|+||++|++|+++|+++|++++.++
T Consensus 162 l~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~ 226 (263)
T 2b6o_A 162 LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR 226 (263)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHTCCTTCTHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcCCccceeHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999987654
No 9
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=2.3e-50 Score=355.16 Aligned_cols=214 Identities=34% Similarity=0.597 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccc-CCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCCCC
Q 023308 49 PFMQKLMAEILGTYFMIFAGCASVVVNLN-NEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK 127 (284)
Q Consensus 49 ~~~~~~~~EfigT~~lv~~~~~~~~~~~~-~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~~~ 127 (284)
+++|++++||+||++|++++|++...+.. ++...+++.++++||+++++.+++++++||||+|||||+++++.|+++|+
T Consensus 3 ~l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 82 (234)
T 2o9g_A 3 HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAK 82 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCHH
Confidence 37899999999999999999998765542 22334577899999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhHHHHHHHHHHHHhhcccc-----------cccccCCC-CcchhhHHHHHHHHHHHHHHHhhhccccccc
Q 023308 128 QVPPYILCQVLGSTLAAGTLRLLFQEKQD-----------QFAGTLPA-GSNIQAFVMEFIITFYLMFVISGVATDNRAI 195 (284)
Q Consensus 128 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-----------~~~~~~p~-~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~~ 195 (284)
+++.|+++|++||++|+.+++.++++... ....+.|. .+..++++.|+++||+|+++++.+. |++..
T Consensus 83 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~~-d~~~~ 161 (234)
T 2o9g_A 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGAT-DKFAP 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHHT-STTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHhc-CCCCc
Confidence 99999999999999999999999864321 12224554 3778999999999999999999874 55555
Q ss_pred cchhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhhC--CCceeeeeecchHHHHHHHHHHHHHhc
Q 023308 196 GELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQ--YKGLWIYIVAPPLGATAGAWVYNMVRY 263 (284)
Q Consensus 196 ~~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~--~~~~wvy~v~p~~Ga~la~~l~~~~~~ 263 (284)
..+.|+.||+++.+.++..++.||++|||||||||+++.++ |+++|+||++|++|+++|+++|++++.
T Consensus 162 ~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~ 231 (234)
T 2o9g_A 162 AGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLE 231 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHHHHHcC
Confidence 56899999999999999999999999999999999999875 559999999999999999999999874
No 10
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-50 Score=357.98 Aligned_cols=220 Identities=29% Similarity=0.459 Sum_probs=189.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCC
Q 023308 45 YFSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRF 124 (284)
Q Consensus 45 ~~~~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~ 124 (284)
..+.+++|++++||+|||+|+++++++.... .. ...+++.++++||+++++.+++++++||||+|||||+++++.|++
T Consensus 6 ~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~-~~-~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~ 83 (266)
T 3d9s_A 6 VCSVAFLKAVFAEFLATLIFVFFGLGSALKW-PS-ALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQI 83 (266)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHHHHHSCC-SS-SCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHTSSS
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC-CCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHhcCC
Confidence 3456789999999999999999999987532 22 224577899999999999999999999999999999999999999
Q ss_pred CCCcccchhhhhhhHHHHHHHHHHHHhhcccccccc-cC--CCCcchhhHHHHHHHHHHHHHHHhhhcccccc-ccchhh
Q 023308 125 PWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG-TL--PAGSNIQAFVMEFIITFYLMFVISGVATDNRA-IGELAG 200 (284)
Q Consensus 125 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~-~~--p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~-~~~~~~ 200 (284)
+|.+++.|+++|++||++|+++++.+++++.....+ +. +..+..++++.|+++||+|+++++++.++++. ...+.|
T Consensus 84 ~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~~~~~p 163 (266)
T 3d9s_A 84 SLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA 163 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTCCSCCCCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHccccccCceeeccCCccccHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchHH
Confidence 999999999999999999999999998653222222 22 34477899999999999999999998533332 245789
Q ss_pred HHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhhCCCc-eeeeeecchHHHHHHHHHHHHHhcCCC
Q 023308 201 LAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKG-LWIYIVAPPLGATAGAWVYNMVRYTDK 266 (284)
Q Consensus 201 l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~-~wvy~v~p~~Ga~la~~l~~~~~~~~~ 266 (284)
+.||+++.+.++.++++||++|||||+|||+++.++|.+ +||||++|++|+++|+++|++++.++.
T Consensus 164 l~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~ 230 (266)
T 3d9s_A 164 LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNS 230 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHcCCcccCEeeeehHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999998 999999999999999999999976543
No 11
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=7e-50 Score=360.95 Aligned_cols=220 Identities=32% Similarity=0.440 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCCCC
Q 023308 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK 127 (284)
Q Consensus 48 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~~~ 127 (284)
++++|++++||+|||+|+++++++++.....+...+.+.++++||+++++.+++++++||||+|||||+++++.|+++|+
T Consensus 5 ~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 84 (281)
T 1ldf_A 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKR 84 (281)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCCHH
Confidence 36899999999999999999998875433222223445689999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhHHHHHHHHHHHHhhcccc-------------------cccccCCC--CcchhhHHHHHHHHHHHHHHHh
Q 023308 128 QVPPYILCQVLGSTLAAGTLRLLFQEKQD-------------------QFAGTLPA--GSNIQAFVMEFIITFYLMFVIS 186 (284)
Q Consensus 128 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~-------------------~~~~~~p~--~s~~~~~~~E~~~Tf~l~~~i~ 186 (284)
+++.||++|++||++|+++++.++++... ....+.|. .+..++++.|+++||+|+++++
T Consensus 85 ~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~~il 164 (281)
T 1ldf_A 85 KVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLIL 164 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999864311 12335554 4788999999999999999999
Q ss_pred hhcccccc--ccchhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh-------CC------CceeeeeecchHHH
Q 023308 187 GVATDNRA--IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS-------QY------KGLWIYIVAPPLGA 251 (284)
Q Consensus 187 ~~~~~~~~--~~~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-------~~------~~~wvy~v~p~~Ga 251 (284)
.+.++++. .+.+.|+.||+++.+.+++.++.||++|||||||||+++.. .| .++||||++|++|+
T Consensus 165 ~~~d~~~~~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~vgPi~Ga 244 (281)
T 1ldf_A 165 ALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGA 244 (281)
T ss_dssp HHHCTTSSSCCGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHHHHHHH
T ss_pred HHhccCCCCcccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhHHHHHHH
Confidence 98543332 24689999999999999999999999999999999999861 12 27999999999999
Q ss_pred HHHHHHHHHHhcCCCc
Q 023308 252 TAGAWVYNMVRYTDKP 267 (284)
Q Consensus 252 ~la~~l~~~~~~~~~~ 267 (284)
++|+++|++++.++.|
T Consensus 245 ~la~~~y~~l~~~~~~ 260 (281)
T 1ldf_A 245 IVGAFAYRKLIGRHLP 260 (281)
T ss_dssp HHHHHHHHHHTGGGC-
T ss_pred HHHHHHHHHHhCccCC
Confidence 9999999999876554
No 12
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=6.5e-50 Score=357.05 Aligned_cols=225 Identities=26% Similarity=0.384 Sum_probs=184.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCCCC
Q 023308 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWK 127 (284)
Q Consensus 48 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~~~ 127 (284)
++++|++++||+|||+|++++|++.+.....+...+++.++++||+++++.+++++++||||+|||||+++++.|+++|+
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 86 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLK 86 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCCcHH
Confidence 46899999999999999999999875432222234677899999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhHHHHHHHHHHHHhhccccccc-----c---cCCCCcchhhHHHHHHHHHHHHHHHhhhccccc--cccc
Q 023308 128 QVPPYILCQVLGSTLAAGTLRLLFQEKQDQFA-----G---TLPAGSNIQAFVMEFIITFYLMFVISGVATDNR--AIGE 197 (284)
Q Consensus 128 ~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~-----~---~~p~~s~~~~~~~E~~~Tf~l~~~i~~~~~~~~--~~~~ 197 (284)
+++.|+++|++||++|+++++.++++...... + .....+..++++.|+++||+|+++++.+.++++ ....
T Consensus 87 ~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d~~~~~~~~~ 166 (258)
T 3c02_A 87 KIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHI 166 (258)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhCcccCCcccc
Confidence 99999999999999999999999874321110 1 111123446999999999999999999753332 2345
Q ss_pred hh-hHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh------CC----CceeeeeecchHHHHHHHHHHHHHhcCCC
Q 023308 198 LA-GLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS------QY----KGLWIYIVAPPLGATAGAWVYNMVRYTDK 266 (284)
Q Consensus 198 ~~-~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~------~~----~~~wvy~v~p~~Ga~la~~l~~~~~~~~~ 266 (284)
+. |+.||+++.+.+++.++.||++|||||+|||+++.. .| .++||||++|++|+++|+++|++++.++.
T Consensus 167 ~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~~~~ 246 (258)
T 3c02_A 167 LKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLV 246 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHHHhcccC
Confidence 77 999999999999999999999999999999999873 34 66999999999999999999999987665
Q ss_pred cccccc
Q 023308 267 PLREIT 272 (284)
Q Consensus 267 ~~~~~~ 272 (284)
|+++++
T Consensus 247 ~~~~~~ 252 (258)
T 3c02_A 247 DLANNE 252 (258)
T ss_dssp HHC---
T ss_pred CCcccc
Confidence 544333
No 13
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=2.3e-48 Score=345.07 Aligned_cols=215 Identities=33% Similarity=0.560 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcc--cC----------C-----CccCchHHHHHHHHHHHHHHHHHccCCCccCC
Q 023308 49 PFMQKLMAEILGTYFMIFAGCASVVVNL--NN----------E-----KIVSLPGISIVWGLVVMVLVYSLGHISGAHFN 111 (284)
Q Consensus 49 ~~~~~~~~EfigT~~lv~~~~~~~~~~~--~~----------~-----~~~~~~~~al~~g~~~~~~i~~~~~iSGah~N 111 (284)
+++|++++||+||++|+++++++.+... .+ + ...+++.++++||+++++.+++++++||||+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 4789999999999999999998875432 11 1 11123448999999999999999999999999
Q ss_pred hHhhHHHHHhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhccc---ccccccCC--CCcchhhHHHHHHHHHHHHHHHh
Q 023308 112 PSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQ---DQFAGTLP--AGSNIQAFVMEFIITFYLMFVIS 186 (284)
Q Consensus 112 PAVTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~---~~~~~~~p--~~s~~~~~~~E~~~Tf~l~~~i~ 186 (284)
||||+++++.|+++|++++.|+++|++||++|+.+++.+++++. .....+.| ..+..++++.|+++||+|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999999999999999997522 22344555 34788999999999999999999
Q ss_pred hhccccccccchhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHh--h----hCCCceeeeeecchHHHHHHHHHHHH
Q 023308 187 GVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIV--S----SQYKGLWIYIVAPPLGATAGAWVYNM 260 (284)
Q Consensus 187 ~~~~~~~~~~~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~--~----~~~~~~wvy~v~p~~Ga~la~~l~~~ 260 (284)
.+.++++......|+.+|+++.+.+++.+++||+++||||||||+++ . .+|.+.|+||++|++|+++|+++|++
T Consensus 163 ~~~~~~~~~~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~ 242 (246)
T 2f2b_A 163 GIAVDERAPKGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQY 242 (246)
T ss_dssp HHTTSTTSCTTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHH
Confidence 97666665566899999999999999999999999999999999993 3 36888889999999999999999998
Q ss_pred Hhc
Q 023308 261 VRY 263 (284)
Q Consensus 261 ~~~ 263 (284)
++.
T Consensus 243 l~~ 245 (246)
T 2f2b_A 243 LTS 245 (246)
T ss_dssp HTC
T ss_pred HcC
Confidence 863
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.57 E-value=6.4e-15 Score=130.15 Aligned_cols=100 Identities=26% Similarity=0.426 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHH-----hc
Q 023308 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHAT-----CK 122 (284)
Q Consensus 48 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l-----~g 122 (284)
.+.++.++.|+++||+|++..++.....+. . . ...++.+|+.+....++.+++||+|+|||+|+++.+ .+
T Consensus 141 ~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~-~--~--~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~ 215 (246)
T 2f2b_A 141 ISYWQAMLAEVVGTFLLMITIMGIAVDERA-P--K--GFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAG 215 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTSTTS-C--T--TCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHheeeEEecCCCC-C--C--ceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCC
Confidence 357899999999999999998875432211 1 1 125788899999999999999999999999999988 34
Q ss_pred CCCCCcccchhhhhhhHHHHHHHHHHHHhh
Q 023308 123 RFPWKQVPPYILCQVLGSTLAAGTLRLLFQ 152 (284)
Q Consensus 123 ~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~ 152 (284)
+..|.+.|+||++|++|+++|+++++.+++
T Consensus 216 ~~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 216 TDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp CCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 567888999999999999999998887653
No 15
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.52 E-value=9.7e-15 Score=130.09 Aligned_cols=100 Identities=30% Similarity=0.302 Sum_probs=85.9
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhccccc-cccc--hhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh-CCCcee
Q 023308 166 SNIQAFVMEFIITFYLMFVISGVATDNR-AIGE--LAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS-QYKGLW 241 (284)
Q Consensus 166 s~~~~~~~E~~~Tf~l~~~i~~~~~~~~-~~~~--~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~~~~w 241 (284)
+..+.+++|+++||+|+++.+++....+ .... ..++.+|+++.+.+++.+++||+|+|||++++.++.++ .|...|
T Consensus 8 ~~~~~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~g~~~~~~~~ 87 (263)
T 2b6o_A 8 SFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAI 87 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHhcCCCHHHHH
Confidence 4568899999999999999988654322 1112 36799999999999999999999999999999999876 788999
Q ss_pred eeeecchHHHHHHHHHHHHHhcCC
Q 023308 242 IYIVAPPLGATAGAWVYNMVRYTD 265 (284)
Q Consensus 242 vy~v~p~~Ga~la~~l~~~~~~~~ 265 (284)
+||++|++|+++|+.+++.+++.+
T Consensus 88 ~Yi~AQ~lGa~~ga~l~~~~~~~~ 111 (263)
T 2b6o_A 88 CYVVAQLLGAVAGAAVLYSVTPPA 111 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999998653
No 16
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.43 E-value=8.1e-14 Score=123.33 Aligned_cols=99 Identities=30% Similarity=0.348 Sum_probs=82.9
Q ss_pred CcchhhHHHHHHHHHHHHHHHhhhccc-c--c-c-cc-chhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh-CC
Q 023308 165 GSNIQAFVMEFIITFYLMFVISGVATD-N--R-A-IG-ELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS-QY 237 (284)
Q Consensus 165 ~s~~~~~~~E~~~Tf~l~~~i~~~~~~-~--~-~-~~-~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~ 237 (284)
.+..+.+++|+++||+|+++.++.... . + . .+ ....+.+|+++++.+++.+++||+++|||++++.++.++ .|
T Consensus 27 ~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~ 106 (256)
T 3llq_A 27 YVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFPA 106 (256)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcCCCH
Confidence 467889999999999999998875321 1 1 1 11 135689999999999999999999999999999999876 79
Q ss_pred CceeeeeecchHHHHHHHHHHHHHhc
Q 023308 238 KGLWIYIVAPPLGATAGAWVYNMVRY 263 (284)
Q Consensus 238 ~~~wvy~v~p~~Ga~la~~l~~~~~~ 263 (284)
...+.|+++|++|+++|+++.+.+++
T Consensus 107 ~~~~~YiiAQ~lGA~~ga~lv~~~~~ 132 (256)
T 3llq_A 107 SSLVPYVIAQVAGAIVAAAALYVIAT 132 (256)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999998874
No 17
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.41 E-value=2.4e-13 Score=122.90 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=84.9
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcccccc-----cc--chhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh-CC
Q 023308 166 SNIQAFVMEFIITFYLMFVISGVATDNRA-----IG--ELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS-QY 237 (284)
Q Consensus 166 s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~-----~~--~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~ 237 (284)
+.++.+++||++||+|+++.++....... .. ....+.+|+++++.+++.+++||+|+|||++++..+.++ .|
T Consensus 11 ~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~ 90 (301)
T 2zz9_A 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 90 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHTSSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHHhcCCCH
Confidence 56789999999999999998875432111 11 136789999999999999999999999999999999886 79
Q ss_pred CceeeeeecchHHHHHHHHHHHHHhcCC
Q 023308 238 KGLWIYIVAPPLGATAGAWVYNMVRYTD 265 (284)
Q Consensus 238 ~~~wvy~v~p~~Ga~la~~l~~~~~~~~ 265 (284)
.....|+++|++|+++|+.+.+.+++++
T Consensus 91 ~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~ 118 (301)
T 2zz9_A 91 AKSVFYITAQCLGAIIGAGILYLVTPPS 118 (301)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999887643
No 18
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=123.31 Aligned_cols=98 Identities=26% Similarity=0.313 Sum_probs=84.2
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcccccc--cc-chhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh-CCCcee
Q 023308 166 SNIQAFVMEFIITFYLMFVISGVATDNRA--IG-ELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS-QYKGLW 241 (284)
Q Consensus 166 s~~~~~~~E~~~Tf~l~~~i~~~~~~~~~--~~-~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~~~~w 241 (284)
+..+.+++||++||+|+++.++....... .+ ...++.+|+++++.+++.+++||+|+|||++++.++.++ .|...+
T Consensus 10 ~~~r~~laEfiGT~~lv~~g~g~~~~~~~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~ 89 (266)
T 3d9s_A 10 AFLKAVFAEFLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAF 89 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHhcCCCHHHHH
Confidence 45688999999999999999886543221 11 136789999999999999999999999999999999886 688999
Q ss_pred eeeecchHHHHHHHHHHHHHhc
Q 023308 242 IYIVAPPLGATAGAWVYNMVRY 263 (284)
Q Consensus 242 vy~v~p~~Ga~la~~l~~~~~~ 263 (284)
.|+++|++|+++|+.+.+.+++
T Consensus 90 ~Yi~AQ~lGA~~ga~l~~~~~~ 111 (266)
T 3d9s_A 90 FYVAAQLVGAIAGAGILYGVAP 111 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999998874
No 19
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.37 E-value=2e-13 Score=124.69 Aligned_cols=100 Identities=23% Similarity=0.280 Sum_probs=83.5
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcccc--cc-----ccchhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh-CC
Q 023308 166 SNIQAFVMEFIITFYLMFVISGVATDN--RA-----IGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS-QY 237 (284)
Q Consensus 166 s~~~~~~~E~~~Tf~l~~~i~~~~~~~--~~-----~~~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~ 237 (284)
+.++.+++||++||+|+++.++..... .. ......+.+|++|++.+++.+++||+++|||++++.++.++ .|
T Consensus 50 ~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~ 129 (340)
T 3iyz_A 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 129 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCH
Confidence 347889999999999999988754321 11 11246789999999999999999999999999999999876 68
Q ss_pred CceeeeeecchHHHHHHHHHHHHHhcCC
Q 023308 238 KGLWIYIVAPPLGATAGAWVYNMVRYTD 265 (284)
Q Consensus 238 ~~~wvy~v~p~~Ga~la~~l~~~~~~~~ 265 (284)
.....|+++|++|+++|+.+.+.+++.+
T Consensus 130 ~~~~~YiiAQ~lGA~~GA~lv~~~~~~~ 157 (340)
T 3iyz_A 130 AKSVFYITAQCLGAIIGAGILYLVTPPS 157 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 8899999999999999999988887543
No 20
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.36 E-value=3.3e-13 Score=120.64 Aligned_cols=99 Identities=25% Similarity=0.353 Sum_probs=82.9
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhccc-------cccc-----cchhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHh
Q 023308 166 SNIQAFVMEFIITFYLMFVISGVATD-------NRAI-----GELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIV 233 (284)
Q Consensus 166 s~~~~~~~E~~~Tf~l~~~i~~~~~~-------~~~~-----~~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~ 233 (284)
+.++.+++||++|++|+++.++.... ++.. ....++.+|+.+.+.+++.+++||+|+|||++++..+.
T Consensus 9 ~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~ 88 (271)
T 1j4n_A 9 LFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLS 88 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHHHHHHHc
Confidence 45688999999999999988774321 1111 12467999999999999999999999999999999998
Q ss_pred hh-CCCceeeeeecchHHHHHHHHHHHHHhcC
Q 023308 234 SS-QYKGLWIYIVAPPLGATAGAWVYNMVRYT 264 (284)
Q Consensus 234 ~~-~~~~~wvy~v~p~~Ga~la~~l~~~~~~~ 264 (284)
++ .|.....|+++|++|+++|+.+.+.++..
T Consensus 89 g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~ 120 (271)
T 1j4n_A 89 CQISVLRAIMYIIAQCVGAIVATAILSGITSS 120 (271)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 86 68889999999999999999999988743
No 21
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.35 E-value=5.5e-13 Score=116.02 Aligned_cols=98 Identities=23% Similarity=0.297 Sum_probs=82.5
Q ss_pred chhhHHHHHHHHHHHHHHHhhhccc--cccc---c--chhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh-CCC
Q 023308 167 NIQAFVMEFIITFYLMFVISGVATD--NRAI---G--ELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS-QYK 238 (284)
Q Consensus 167 ~~~~~~~E~~~Tf~l~~~i~~~~~~--~~~~---~--~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~~ 238 (284)
.+|.+++||++||+|++..++.... ++.+ . ....+.+|+.+.+.+++.+++||+|+|||++++..+.++ +|.
T Consensus 3 ~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~~ 82 (223)
T 3gd8_A 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIA 82 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCCHH
Confidence 4688999999999999998876432 1111 1 245789999999999999999999999999999999876 688
Q ss_pred ceeeeeecchHHHHHHHHHHHHHhcC
Q 023308 239 GLWIYIVAPPLGATAGAWVYNMVRYT 264 (284)
Q Consensus 239 ~~wvy~v~p~~Ga~la~~l~~~~~~~ 264 (284)
....|+++|++|+++++.+.+.++++
T Consensus 83 ~~~~Yi~AQ~lGA~~ga~lv~~~~~~ 108 (223)
T 3gd8_A 83 KSVFYIAAQCLGAIIGAGILYLVTPP 108 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 89999999999999999998887653
No 22
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.34 E-value=7.4e-13 Score=119.04 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=83.8
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhcc----cccccc-chhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh-CCCc
Q 023308 166 SNIQAFVMEFIITFYLMFVISGVAT----DNRAIG-ELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS-QYKG 239 (284)
Q Consensus 166 s~~~~~~~E~~~Tf~l~~~i~~~~~----~~~~~~-~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~~~ 239 (284)
+..+.+++||++||+|+++.+++.. .+...+ ....+.+|+.+.+.+++.+++||+|+|||++++..+.++ .|..
T Consensus 6 ~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~ 85 (281)
T 1ldf_A 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRK 85 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCCHHH
Confidence 5578899999999999998776432 111111 236789999999999999999999999999999999886 7999
Q ss_pred eeeeeecchHHHHHHHHHHHHHhcCC
Q 023308 240 LWIYIVAPPLGATAGAWVYNMVRYTD 265 (284)
Q Consensus 240 ~wvy~v~p~~Ga~la~~l~~~~~~~~ 265 (284)
...|+++|++|+++|+.+.+.+++++
T Consensus 86 ~~~Yi~AQ~lGA~~ga~l~~~~~~~~ 111 (281)
T 1ldf_A 86 VIPFIVSQVAGAFCAAALVYGLYYNL 111 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999887543
No 23
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.34 E-value=6.2e-13 Score=118.12 Aligned_cols=99 Identities=26% Similarity=0.370 Sum_probs=83.2
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhccc----ccccc-chhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh-CCCc
Q 023308 166 SNIQAFVMEFIITFYLMFVISGVATD----NRAIG-ELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS-QYKG 239 (284)
Q Consensus 166 s~~~~~~~E~~~Tf~l~~~i~~~~~~----~~~~~-~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~~~~ 239 (284)
+..+.+++|+++||+|+++.+++... +...+ ....+.+|+.+.+.+++.+++||+|+|||++++..+.++ .|..
T Consensus 8 ~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~ 87 (258)
T 3c02_A 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKK 87 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCCcHHH
Confidence 45688999999999999987764321 11111 135788999999999999999999999999999999886 7999
Q ss_pred eeeeeecchHHHHHHHHHHHHHhcC
Q 023308 240 LWIYIVAPPLGATAGAWVYNMVRYT 264 (284)
Q Consensus 240 ~wvy~v~p~~Ga~la~~l~~~~~~~ 264 (284)
...|+++|++|+++|+.+.+.++++
T Consensus 88 ~~~Yi~AQ~lGa~~ga~l~~~~~~~ 112 (258)
T 3c02_A 88 IPVYFFAQLLGAFVGTSTVYGLYHG 112 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcch
Confidence 9999999999999999999988764
No 24
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.34 E-value=4.8e-13 Score=121.15 Aligned_cols=99 Identities=22% Similarity=0.346 Sum_probs=83.0
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhccc---cc---cc-c-chhhHHHHHHHHHHHHHhcCCccCccchhhhHHHHHhhh-C
Q 023308 166 SNIQAFVMEFIITFYLMFVISGVATD---NR---AI-G-ELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSS-Q 236 (284)
Q Consensus 166 s~~~~~~~E~~~Tf~l~~~i~~~~~~---~~---~~-~-~~~~l~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~-~ 236 (284)
+..+.+++||++||+|+++.++.... .. .. + ....+.+|+.+++.+++.+++||+++|||++++..+.++ .
T Consensus 59 ~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~ 138 (304)
T 3cn5_A 59 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVE 138 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCC
Confidence 56788999999999999998764321 11 11 1 135689999999999999999999999999999999886 6
Q ss_pred CCceeeeeecchHHHHHHHHHHHHHhcC
Q 023308 237 YKGLWIYIVAPPLGATAGAWVYNMVRYT 264 (284)
Q Consensus 237 ~~~~wvy~v~p~~Ga~la~~l~~~~~~~ 264 (284)
|.....|+++|++|+++|+.+.+.+++.
T Consensus 139 ~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~ 166 (304)
T 3cn5_A 139 LLRALVYMIAQCLGAICGVGLVKAFMKG 166 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8889999999999999999999988754
No 25
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.30 E-value=3.8e-12 Score=111.53 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHh-cCCCC
Q 023308 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATC-KRFPW 126 (284)
Q Consensus 48 ~~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~-g~~~~ 126 (284)
.+..+.++.|+++||+|++..++... +... .. ..++.+|+.+.....+.++.||+.+|||+++++.+. |...|
T Consensus 132 ~~~~~~~~~E~i~T~~Lv~~i~~~~d--~~~~--~~--~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~ 205 (234)
T 2o9g_A 132 YSMLSALVVELVLSAGFLLVIHGATD--KFAP--AG--FAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWAL 205 (234)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTS--TTSC--TT--CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcC--CCCc--cc--hHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCC
Confidence 35788999999999999998776432 1111 11 257888999999999999999999999999999886 44457
Q ss_pred CcccchhhhhhhHHHHHHHHHHHHhhc
Q 023308 127 KQVPPYILCQVLGSTLAAGTLRLLFQE 153 (284)
Q Consensus 127 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~ 153 (284)
.+.|+||++|++|+++|+++++.++.+
T Consensus 206 ~~~Wv~~vgP~~Ga~la~~~y~~~~~~ 232 (234)
T 2o9g_A 206 EQLWFFWVVPIVGGIIGGLIYRTLLEK 232 (234)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ceeeeeehHHhHHHHHHHHHHHHHcCC
Confidence 799999999999999999998887653
No 26
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.26 E-value=1.4e-11 Score=110.50 Aligned_cols=99 Identities=19% Similarity=0.132 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCccCchHHHHHHHHHHHHHHHHHccCCCccCChHhhHHHHHhcCCCCCc
Q 023308 49 PFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQ 128 (284)
Q Consensus 49 ~~~~~~~~EfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~~~~~i~~~~~iSGah~NPAVTla~~l~g~~~~~~ 128 (284)
+..+.++.|+++||+|++..++..... ... ....++.+|+.+....++.++.||+.+|||++++..+....-+..
T Consensus 167 s~~~~~~~E~i~Tf~Lv~~Il~~~~~~-~~~----~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~ 241 (279)
T 2w2e_A 167 SRTRGLFLEAFGTAILCLTVLMLAVEK-HRA----TWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNY 241 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSC-STT----GGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccCC-CCC----cCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhh
Confidence 577899999999999999877653211 111 112577889999999999999999999999999999987644567
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhh
Q 023308 129 VPPYILCQVLGSTLAAGTLRLLFQ 152 (284)
Q Consensus 129 ~~~yi~aQ~lGa~~g~~~~~~~~~ 152 (284)
.|+||+++++|+++|+++++.+..
T Consensus 242 ~WVy~vgPiiGa~la~~ly~~l~~ 265 (279)
T 2w2e_A 242 HWIYWLGPILGAFLAYSIWQMWKW 265 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999888765
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=94.92 E-value=0.97 Score=40.02 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHccC-CCccCChHhhHHHHHhcCCCCCcccchhhhhhhHHHHHHHHHHHHhh--ccc---cc-cc
Q 023308 87 ISIVWGLVVMVLVYSLGHI-SGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQ--EKQ---DQ-FA 159 (284)
Q Consensus 87 ~al~~g~~~~~~i~~~~~i-SGah~NPAVTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~--~~~---~~-~~ 159 (284)
.++.+.+++.++++.-+.. +| |--.++ ..+.|+.+|.+.+--|.-=++|=++|++++-++.. ... .. ..
T Consensus 71 ~g~~F~vGL~lVvl~G~ELFTg---n~l~~~-a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~~ 146 (285)
T 3kcu_A 71 GGICFSLGLILCVVCGADLFTS---TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWG 146 (285)
T ss_dssp HHHHHTHHHHHHHHHTCCCTTT---THHHHH-HHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHHH
T ss_pred HHHHHHHHHHHHHHhCcccccc---chHHHH-HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchHHH
Confidence 4556666666655554444 33 422333 34578888877766555545555555544433321 100 00 00
Q ss_pred c-------cCCCCcchhhHHHHHHHHHHHHHHHhhh
Q 023308 160 G-------TLPAGSNIQAFVMEFIITFYLMFVISGV 188 (284)
Q Consensus 160 ~-------~~p~~s~~~~~~~E~~~Tf~l~~~i~~~ 188 (284)
. .--..+..+.|+-=.+|.++..+.++..
T Consensus 147 ~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~ 182 (285)
T 3kcu_A 147 LNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMS 182 (285)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0112356777888888888888887764
No 28
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=90.49 E-value=0.65 Score=41.03 Aligned_cols=137 Identities=11% Similarity=0.122 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhh-cccCCCccC--chHHHHHHHHHHHHHHHHHccC-CCccCChHhhHHHHHhcC
Q 023308 48 VPFMQKLMAEILGTYFMIFAGCASVVV-NLNNEKIVS--LPGISIVWGLVVMVLVYSLGHI-SGAHFNPSVTIAHATCKR 123 (284)
Q Consensus 48 ~~~~~~~~~EfigT~~lv~~~~~~~~~-~~~~~~~~~--~~~~al~~g~~~~~~i~~~~~i-SGah~NPAVTla~~l~g~ 123 (284)
++..+-++.-+++-+++-+........ ....+...+ .+..++.+.+++.++++.-+.. +|--+ .+++ .+.|+
T Consensus 28 ~~~~~~~~~~~~AG~~I~~g~~~~~~v~~~~~~~~~g~~~ll~g~~F~vGL~lVvl~g~ELFTgn~l---~~~~-~~~~~ 103 (280)
T 3kly_A 28 KAAYKSFLLAISAGIQIGIAFVFYTVVTTGAHDMPYGVTKLLGGLAFSLGLILVVITGGELFTSSVL---ILVA-KASGK 103 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTTTCC---CCSS-SSSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHccccccccchH---HHHH-HHcCC
Confidence 445555555555555444433222211 111111111 2234566666666665554443 44333 2322 45688
Q ss_pred CCCCcccchhhhhhhHHHHHHHHHHHHhh--ccc---cc-ccc-------cCCCCcchhhHHHHHHHHHHHHHHHhhh
Q 023308 124 FPWKQVPPYILCQVLGSTLAAGTLRLLFQ--EKQ---DQ-FAG-------TLPAGSNIQAFVMEFIITFYLMFVISGV 188 (284)
Q Consensus 124 ~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~--~~~---~~-~~~-------~~p~~s~~~~~~~E~~~Tf~l~~~i~~~ 188 (284)
.+|.+.+--|.-=++|=++|++++-++.. ... .. ... .--..+..+.|+-=.+|.++..+.++..
T Consensus 104 is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~ 181 (280)
T 3kly_A 104 ISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAVWMT 181 (280)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89888876665555555555554443321 100 00 000 0112356777888888888888887764
No 29
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=84.97 E-value=0.61 Score=40.82 Aligned_cols=99 Identities=9% Similarity=0.138 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHccC-CCccCChHhhHHHHHhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhccc---ccccc--
Q 023308 87 ISIVWGLVVMVLVYSLGHI-SGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQ---DQFAG-- 160 (284)
Q Consensus 87 ~al~~g~~~~~~i~~~~~i-SGah~NPAVTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~---~~~~~-- 160 (284)
.++.+.+++.++++.-+.. +| |-.......+.|+.+|.+.+--|.-=++|=++|++++-++..... .....
T Consensus 61 ~g~~F~vGl~lVvl~g~eLfTg---n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~~~~ 137 (261)
T 4fc4_A 61 MGATFGIALTLVIIAGSELFTG---HTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSI 137 (261)
T ss_dssp HHHHTTHHHHHHHHTCCCCHHH---HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCccccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHH
Confidence 3455555555444433322 22 433222344568888877766654444444444443333322100 00000
Q ss_pred --cC----CCCcchhhHHHHHHHHHHHHHHHhhh
Q 023308 161 --TL----PAGSNIQAFVMEFIITFYLMFVISGV 188 (284)
Q Consensus 161 --~~----p~~s~~~~~~~E~~~Tf~l~~~i~~~ 188 (284)
.. -..+..+.|+--.+|.++..+.++..
T Consensus 138 ~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~ 171 (261)
T 4fc4_A 138 VHSVALAKTTAPATVLFFKGALCNWLVCLAIWMA 171 (261)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01245666777777888887777654
No 30
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=77.03 E-value=0.93 Score=39.80 Aligned_cols=99 Identities=12% Similarity=0.155 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHccC-CCccCChHhhHHHHHhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhccc----ccccc-
Q 023308 87 ISIVWGLVVMVLVYSLGHI-SGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQ----DQFAG- 160 (284)
Q Consensus 87 ~al~~g~~~~~~i~~~~~i-SGah~NPAVTla~~l~g~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~----~~~~~- 160 (284)
.++.+.+++.++++.-+.. +| |-.......+.|+.+|.+.+--|.-=++|=++|++++-+++.... .....
T Consensus 67 ~g~~F~~Gl~lVvl~g~eLfTg---n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~~~~~~ 143 (268)
T 3tds_E 67 MGLSFAIALSLVIMTGTELFTG---NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAEF 143 (268)
T ss_dssp HHHTCTHHHHHHHHHTCCCHHH---HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcHHHHH
Confidence 4555555555555443332 22 433222345678888887766555555555555544433332110 00000
Q ss_pred --c----CCCCcchhhHHHHHHHHHHHHHHHhhh
Q 023308 161 --T----LPAGSNIQAFVMEFIITFYLMFVISGV 188 (284)
Q Consensus 161 --~----~p~~s~~~~~~~E~~~Tf~l~~~i~~~ 188 (284)
. --..+..+.|+--.+|.++..+.++..
T Consensus 144 ~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~ 177 (268)
T 3tds_E 144 FANTAASKASMPFTALFFRGILCNILVCVSVLCS 177 (268)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012355677777788888888877754
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=40.22 E-value=2.5 Score=38.02 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.0
Q ss_pred HccCCCccCChHhhHHHHHhcC
Q 023308 102 LGHISGAHFNPSVTIAHATCKR 123 (284)
Q Consensus 102 ~~~iSGah~NPAVTla~~l~g~ 123 (284)
.+.-||||++||++++-.+..+
T Consensus 8 ~~GGTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 8 MAGGTGGHVFPALACAREFQAR 29 (365)
T ss_dssp ECCSSHHHHHHHHHHHHHHHHT
T ss_pred EcCCCHHHHHHHHHHHHHHHhC
Confidence 3456889999999999988654
Done!