BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023309
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FJI|1 Chain 1, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
pdb|2FJI|2 Chain 2, Crystal Structure Of The C-Terminal Domain Of The Exocyst
Subunit Sec6p
Length = 399
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 77/187 (41%), Gaps = 32/187 (17%)
Query: 22 PVANRTDKVAFIQSNASKTC----TRQITV---TKHMKRPVYVYYQLDNFYQNHRRYVKS 74
P + +D + F+ + +KTC T+Q+ V T K V V + + ++ S
Sbjct: 45 PPHSDSDGLLFL--DGTKTCFQMFTQQVEVAAGTNQAKILVGVVERFSDLLTKRQKNWIS 102
Query: 75 RNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNG 134
+ E++KK+ + +PE TP+ + P GL+ Y + + Q+
Sbjct: 103 KISEEIKKQINYNHKYDIDPESITPEDE--CPGGLVE-------YLIAVSNDQMKAADYA 153
Query: 135 IAWKSDRDHKFGKEVFP------SNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPT 188
+A S K+GK V +N GTL G A + + L LI M
Sbjct: 154 VAISS----KYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLG----LITLMFDDLRKP 205
Query: 189 FRKLYGK 195
+++++ K
Sbjct: 206 YQEIFSK 212
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 157 GTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENN--- 213
G++ A+ N + ++ L+V+ + L FR LY I +DL + I +E+
Sbjct: 80 GSMTTPANWNSPLRPGEKYPLVVF--SHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRS 137
Query: 214 -YNTYSFSGKKKLVLSTTSWL 233
TY F + + SWL
Sbjct: 138 ASATYYFKDQSAAEIGDKSWL 158
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 157 GTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENN--- 213
G++ A+ N + ++ L+V+ + L FR LY I +DL + I +E+
Sbjct: 80 GSMTTPANWNSPLRPGEKYPLVVF--SHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRS 137
Query: 214 -YNTYSFSGKKKLVLSTTSWL 233
TY F + + SWL
Sbjct: 138 ASATYYFKDQSAAEIGDKSWL 158
>pdb|1QQK|A Chain A, The Crystal Structure Of Fibroblast Growth Factor 7
(Keratinocyte Growth Factor)
pdb|1QQK|B Chain B, The Crystal Structure Of Fibroblast Growth Factor 7
(Keratinocyte Growth Factor)
Length = 140
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 191 KLYGKIEVDLEENDIIDVILENNYNTYS 218
KLY K E + E+ + ++ILEN+YNTY+
Sbjct: 72 KLYAKKECN-EDCNFKELILENHYNTYA 98
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 198 VDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSW 232
VDL +NDII+++LE+ + +G+ ++ T W
Sbjct: 376 VDLSDNDIINIVLEDLKKVMNINGEPEMT-CVTRW 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,309,503
Number of Sequences: 62578
Number of extensions: 400545
Number of successful extensions: 922
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 6
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)