Query 023309
Match_columns 284
No_of_seqs 122 out of 519
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:03:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2952 Cell cycle control pro 100.0 8.9E-94 1.9E-98 665.3 21.9 274 3-280 64-351 (351)
2 PF03381 CDC50: LEM3 (ligand-e 100.0 8.2E-86 1.8E-90 610.0 23.4 261 3-273 2-278 (278)
3 COG5035 CDC50 Cell cycle contr 100.0 7.1E-84 1.5E-88 588.9 20.4 273 3-280 64-372 (372)
4 PF01102 Glycophorin_A: Glycop 89.8 0.29 6.3E-06 40.5 2.8 26 241-266 65-90 (122)
5 COG1470 Predicted membrane pro 68.7 21 0.00045 36.1 7.7 36 198-234 454-489 (513)
6 PF11797 DUF3324: Protein of u 66.5 5.8 0.00013 33.1 2.9 48 181-229 84-131 (140)
7 PF12669 P12: Virus attachment 54.7 9.2 0.0002 27.4 1.8 25 246-270 3-27 (58)
8 PF01102 Glycophorin_A: Glycop 54.6 20 0.00043 29.7 4.0 30 238-267 65-94 (122)
9 PF10204 DuoxA: Dual oxidase m 44.7 19 0.0004 34.0 2.7 26 245-270 246-271 (281)
10 PF14991 MLANA: Protein melan- 42.7 6.2 0.00013 32.3 -0.7 42 217-270 11-52 (118)
11 PF05915 DUF872: Eukaryotic pr 38.9 27 0.00058 28.5 2.5 27 236-262 42-68 (115)
12 PF12606 RELT: Tumour necrosis 37.0 37 0.00081 23.7 2.6 25 242-266 2-26 (50)
13 PF05399 EVI2A: Ectropic viral 36.1 35 0.00077 30.9 3.0 37 238-274 128-180 (227)
14 PF01299 Lamp: Lysosome-associ 34.8 29 0.00063 32.6 2.4 27 243-269 273-299 (306)
15 PF02009 Rifin_STEVOR: Rifin/s 34.8 40 0.00087 32.1 3.3 29 241-269 259-287 (299)
16 PF07234 DUF1426: Protein of u 32.6 57 0.0012 26.2 3.3 28 238-265 16-43 (117)
17 PF13120 DUF3974: Domain of un 32.5 49 0.0011 26.5 2.9 37 239-280 3-39 (126)
18 PF08507 COPI_assoc: COPI asso 32.4 72 0.0016 26.3 4.1 28 241-268 85-112 (136)
19 PF10260 SAYSvFN: Uncharacteri 32.2 64 0.0014 24.2 3.4 33 247-279 18-52 (71)
20 KOG2887 Membrane protein invol 29.4 57 0.0012 28.7 3.1 30 242-271 50-79 (175)
21 PF15048 OSTbeta: Organic solu 28.4 80 0.0017 26.3 3.6 23 243-265 38-60 (125)
22 PF06679 DUF1180: Protein of u 27.5 1E+02 0.0022 26.8 4.3 29 236-264 90-118 (163)
23 PF07495 Y_Y_Y: Y_Y_Y domain; 26.7 99 0.0021 21.4 3.5 21 198-219 34-54 (66)
24 PF05393 Hum_adeno_E3A: Human 26.4 1E+02 0.0022 24.3 3.6 31 233-263 26-56 (94)
25 PF09788 Tmemb_55A: Transmembr 26.2 52 0.0011 30.6 2.4 41 230-270 186-227 (256)
26 PF01034 Syndecan: Syndecan do 25.9 25 0.00054 25.9 0.2 22 247-269 20-41 (64)
27 KOG0196 Tyrosine kinase, EPH ( 25.5 2.4E+02 0.0051 30.9 7.2 58 199-258 504-567 (996)
28 TIGR01477 RIFIN variant surfac 25.4 83 0.0018 30.7 3.7 30 240-269 310-341 (353)
29 PF03597 CcoS: Cytochrome oxid 24.3 1.9E+02 0.0042 19.6 4.4 30 244-273 5-34 (45)
30 PF07413 Herpes_UL37_2: Betahe 24.2 1.3E+02 0.0028 28.4 4.7 44 219-262 222-267 (276)
31 PF04639 Baculo_E56: Baculovir 24.2 34 0.00074 32.4 0.8 32 234-265 272-303 (305)
32 PF06365 CD34_antigen: CD34/Po 24.2 63 0.0014 29.1 2.5 21 242-262 103-123 (202)
33 PF06667 PspB: Phage shock pro 23.8 1.4E+02 0.003 22.7 3.9 24 248-271 11-34 (75)
34 PF04277 OAD_gamma: Oxaloaceta 23.5 1.2E+02 0.0026 22.3 3.6 21 242-262 7-27 (79)
35 PRK11486 flagellar biosynthesi 23.5 80 0.0017 26.2 2.8 24 243-266 18-41 (124)
36 PF11381 DUF3185: Protein of u 23.3 82 0.0018 22.8 2.5 25 234-258 34-58 (59)
37 PF02038 ATP1G1_PLM_MAT8: ATP1 22.6 61 0.0013 22.8 1.6 24 240-263 14-37 (50)
38 PF01034 Syndecan: Syndecan do 22.6 27 0.00059 25.7 -0.1 31 243-273 12-42 (64)
39 PTZ00046 rifin; Provisional 22.1 1.1E+02 0.0023 30.0 3.7 30 240-269 315-346 (358)
40 PF05767 Pox_A14: Poxvirus vir 21.4 1.2E+02 0.0026 23.9 3.2 27 245-271 15-41 (92)
41 PRK14748 kdpF potassium-transp 20.8 2E+02 0.0044 17.8 3.5 23 245-267 5-27 (29)
42 PHA02726 hypothetical protein; 20.1 1.4E+02 0.0031 23.3 3.4 21 237-257 7-27 (94)
43 COG5488 Integral membrane prot 20.1 1.2E+02 0.0027 26.1 3.3 34 226-261 19-52 (164)
44 PF04478 Mid2: Mid2 like cell 20.0 17 0.00036 31.3 -1.9 19 235-253 47-65 (154)
No 1
>KOG2952 consensus Cell cycle control protein [Cell cycle control, cell division, chromosome partitioning; Transcription; Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-94 Score=665.33 Aligned_cols=274 Identities=57% Similarity=0.998 Sum_probs=248.9
Q ss_pred cccccCeEEEEEecCCCCCCCCCCCcceeeeecCC--CceeEEEEEecCCCCCceEEEEEecchhhhhhhhhhCCChhhh
Q 023309 3 SLSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNA--SKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQL 80 (284)
Q Consensus 3 ~~~s~~v~E~~~~Yd~~c~~~~~~~~~~~~~~~~~--~~~C~i~f~i~~~~k~pVyvYY~L~nFyQNHr~y~~S~s~~QL 80 (284)
.++|++|+|+++|| ++|...+.++.+.++++... .+.|+++|+||++|++|||+||+|+|||||||||++|||++||
T Consensus 64 ~~as~~v~Ei~i~Y-Tdc~~~~~~~~~~~~~~~~~~~~~~C~~~f~vp~~~k~pVy~YY~L~nfyQNhRRYvkSr~d~QL 142 (351)
T KOG2952|consen 64 LFASSKVIEITIRY-TDCIPTGFRTNPSEYIQGHFDQTKSCTITFTVPKDMKGPVYLYYELTNFYQNHRRYVKSRDDKQL 142 (351)
T ss_pred eEeecceEEEEEec-ccCccccccccchhhhhcccCcccceEEEEEccccCCCCEEEEEehhHHHHHHHHHHhcccHHHh
Confidence 47899999999999 58988665555555555332 4679999999999999999999999999999999999999999
Q ss_pred cCCCCC-CCCCCCCccccCCCCCeeecchhhhcccccceeecccCCc---eeeeeecccccCcccccccCCCCC------
Q 023309 81 KKRSKT-SETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKR---QLTVNKNGIAWKSDRDHKFGKEVF------ 150 (284)
Q Consensus 81 ~G~~~~-~~~~~C~P~~~~~~g~~i~PCGliA~S~FNDtf~l~~~~~---~~~~~~~gIaw~~D~~~kf~~~~~------ 150 (284)
+|+... .+...|.|+..+.+|++|+||||||||||||||++...++ .++++++||||++|+ +||+++.+
T Consensus 143 ~G~~~~~~~~~~C~Pl~~~~~~kpi~PCGlIAnSlFNDTf~~~~~~~~~~~~~l~~kgIaW~sDk-~kf~~p~~n~~~~~ 221 (351)
T KOG2952|consen 143 RGEPSKELNVKSCAPLEYNEGGKPIYPCGLIANSLFNDTFELSLTNDGDSDYPLTTKGIAWESDK-HKFRKPIYNASGIV 221 (351)
T ss_pred cCCCccccCccCCCcceecCCCceeeecchhcchhcccccchhcccCCCccceeccCCccchhhh-hhhcCCCCcccccc
Confidence 999763 4456699999977779999999999999999999976543 789999999999999 99988654
Q ss_pred -CCCCcCCcccCCcccCCCCCCCCchhHHHhhhcCCCCchhhhhhhcccc-CCCCCEEEEEEeeeecCcccCceEEEEEE
Q 023309 151 -PSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVD-LEENDIIDVILENNYNTYSFSGKKKLVLS 228 (284)
Q Consensus 151 -p~~w~~~~~~~~~~~~~~~~~~~ne~FivWMr~Aalp~FrKLYg~i~~~-L~~G~~y~i~I~nnypv~~f~G~K~ivls 228 (284)
|++|++..+.++ ..+++.++.+||+||||||+||||+||||||+|+++ |++| +|++.|++||||..|+|+|.+||+
T Consensus 222 pPpnW~k~~~~gg-~~d~n~pl~~nedfivWMRtAAlPtFrKLy~~i~~~gL~~G-~y~l~i~~Nypv~sf~G~K~~vls 299 (351)
T KOG2952|consen 222 PPPNWQKGYPEGG-YTDDNIPLSENEDFIVWMRTAALPTFRKLYRIIESNGLPKG-TYQLNITNNYPVRSFNGKKKFVLS 299 (351)
T ss_pred CCccccccCCcCC-cCCCCCCchhhHHHHHHHHhcccchHHHHHhhhccCCCCCc-eEEEEEecccceeecCCceEEEEe
Confidence 999999998887 667777799999999999999999999999999986 9999 699999999999999999999999
Q ss_pred eccccCcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 023309 229 TTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRN 280 (284)
Q Consensus 229 t~s~~GgkN~fLgi~yiivG~i~~~~~i~~l~~~~~~~r~~gd~~~l~w~~~ 280 (284)
|.||+||||+||||+|||||++|+++|++|++.|+++||++||+++|+|++.
T Consensus 300 t~SwlGgkN~FLgI~YLvVG~ic~~l~~~f~~~~l~~~r~~~d~~~l~~~~~ 351 (351)
T KOG2952|consen 300 TTSWLGGKNPFLGIAYLVVGSICILLGLIFLVIYLFKPRRLGDPSYLSWNRS 351 (351)
T ss_pred eccccccCCccceehHHHHHHHHHHHHHHHHHHHhhcccccCCccccccccC
Confidence 9999999999999999999999999999999999999999999999999963
No 2
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=100.00 E-value=8.2e-86 Score=609.98 Aligned_cols=261 Identities=51% Similarity=0.838 Sum_probs=225.2
Q ss_pred cccccCeEEEEEecCCCCCCCCCCCcceeeeecCCCceeEEEEEecCCCCCceEEEEEecchhhhhhhhhhCCChhhhcC
Q 023309 3 SLSLYQVVEIVDRYETDCIPVANRTDKVAFIQSNASKTCTRQITVTKHMKRPVYVYYQLDNFYQNHRRYVKSRNDEQLKK 82 (284)
Q Consensus 3 ~~~s~~v~E~~~~Yd~~c~~~~~~~~~~~~~~~~~~~~C~i~f~i~~~~k~pVyvYY~L~nFyQNHr~y~~S~s~~QL~G 82 (284)
++++++|+|+++|||+.|...... ........++|.++|+||++|++||||||||+|||||||||++|+|++||+|
T Consensus 2 l~~s~~v~E~~~~Yd~~~~~~~~~----~~~~~~~~~~c~v~f~i~~~~~~pVyvYY~L~nFYQNhr~y~~S~~~~QL~G 77 (278)
T PF03381_consen 2 LVASNSVVEIEIRYDDCCDCQNCY----INEFSPIPCTCSVTFNIPEDMKGPVYVYYELTNFYQNHRRYVKSRSDSQLKG 77 (278)
T ss_pred EEEeCCEEEEEEECCCCCCCCCcc----ccccCCCCceEEEEEEcCccCCCCEEEEEEEehhhHHhHHHHhcCCHHHhCC
Confidence 478999999999999888653210 0000111468999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCCCCCccccC--CCCCeeecchhhhcccccceeeccc----CCceeeeeecccccCcccccccCCC-------
Q 023309 83 RSKT-SETSQCEPEDTT--PDGKPIVPCGLIAWSLFNDTYTFSR----NKRQLTVNKNGIAWKSDRDHKFGKE------- 148 (284)
Q Consensus 83 ~~~~-~~~~~C~P~~~~--~~g~~i~PCGliA~S~FNDtf~l~~----~~~~~~~~~~gIaw~~D~~~kf~~~------- 148 (284)
+... ++.++|+|+.+. .++++++||||||||||||||+|.. .++.++++++||+|++|++.+|+++
T Consensus 78 ~~~~~~~~~~C~p~~~~~~~~~~~~~PCGliA~S~FNDtF~l~~~~~~~~~~~~~~~~gIaw~~d~~~~fk~~~~~~~~~ 157 (278)
T PF03381_consen 78 KIVSKSDLSDCDPLRTNNENNGKIIYPCGLIANSMFNDTFSLYRRNSGNNENIPLDETGIAWSSDRESKFKNPHYNNSNT 157 (278)
T ss_pred CccccCCCCCCCCceeccCCCCCEeecccHhHhhhccceEEeeecccCCCceeeeecccccCchHHHHhcCCCCCccccc
Confidence 9743 446899999874 4788999999999999999999973 3567999999999999999999873
Q ss_pred CCCCCCcCCcccCCcccCCC-CCCCCchhHHHhhhcCCCCchhhhhhhc-cccCCCCCEEEEEEeeeecCcccCceEEEE
Q 023309 149 VFPSNFQNGTLIGGAHLNES-IPLSKQEDLIVWMRTAALPTFRKLYGKI-EVDLEENDIIDVILENNYNTYSFSGKKKLV 226 (284)
Q Consensus 149 ~~p~~w~~~~~~~~~~~~~~-~~~~~ne~FivWMr~Aalp~FrKLYg~i-~~~L~~G~~y~i~I~nnypv~~f~G~K~iv 226 (284)
++|++|..... .+.. ++..+|||||||||+||||+|||||||| +++|++|+ |+|.|+|||||+.|+|+|+||
T Consensus 158 ~~~~~W~~~~~-----~~~~~p~~~~ne~fivWMr~a~lp~FrKLYg~i~~~~L~~G~-y~i~I~nnypv~~f~G~K~iv 231 (278)
T PF03381_consen 158 VPPPNWRPGYE-----NDTPWPDNSENEHFIVWMRPAALPTFRKLYGRIDNDDLPAGN-YTIDITNNYPVSSFGGKKSIV 231 (278)
T ss_pred cCCCceeeecc-----CCCCCCcccccHHHHHHhccccCCCeeEeEeeeccCCCCCce-EEEEEEEeecccccCcEEEEE
Confidence 35777853211 1222 2334699999999999999999999999 89999995 999999999999999999999
Q ss_pred EEeccccCcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 023309 227 LSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPS 273 (284)
Q Consensus 227 lst~s~~GgkN~fLgi~yiivG~i~~~~~i~~l~~~~~~~r~~gd~~ 273 (284)
|+|+||+||||+||||+||++|++|+++|++|++.|+++||++||++
T Consensus 232 lst~s~~Ggkn~~Lgi~ylvvg~i~~v~~i~~~~~~~~~~r~~gD~~ 278 (278)
T PF03381_consen 232 LSTTSWFGGKNYFLGIAYLVVGGICLVLAIIFLIIHYFKPRKLGDTS 278 (278)
T ss_pred EEeccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999985
No 3
>COG5035 CDC50 Cell cycle control protein [Cell division and chromosome partitioning / Transcription / Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-84 Score=588.89 Aligned_cols=273 Identities=40% Similarity=0.697 Sum_probs=238.0
Q ss_pred cccccCeEEEEEecCCCCCCCCCCC------cce------------eee--ecCC--CceeEEEEEecCCCCCceEEEEE
Q 023309 3 SLSLYQVVEIVDRYETDCIPVANRT------DKV------------AFI--QSNA--SKTCTRQITVTKHMKRPVYVYYQ 60 (284)
Q Consensus 3 ~~~s~~v~E~~~~Yd~~c~~~~~~~------~~~------------~~~--~~~~--~~~C~i~f~i~~~~k~pVyvYY~ 60 (284)
.+++.+|+|++++|+ +|...++.. ... .|. .+.+ ...|+++|++|++||.|||+||+
T Consensus 64 ~~~~s~VqeltI~Yt-dc~t~as~~f~~iPs~~~~~~f~~~~~~~pqW~~~~~~~~d~~~C~irf~vp~~~k~~vfiyyr 142 (372)
T COG5035 64 LVASSSVQELTIDYT-DCMTLASDEFSDIPSEYIQFHFKKKVNVLPQWRFSTDEEDDFQKCQIRFTVPSDMKKPVFIYYR 142 (372)
T ss_pred EEEeeeeeeeeeccc-ccccccchhhhhCchhheeeeeecccccccceeecccccCCcceeEEEEEchhhcccceeeeeh
Confidence 468899999999995 898766311 111 111 1122 46799999999999999999999
Q ss_pred ecchhhhhhhhhhCCChhhhcCCCCC--CCCCCCCccccCCCCCeeecchhhhcccccceeecccC----Cceeeeeecc
Q 023309 61 LDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRN----KRQLTVNKNG 134 (284)
Q Consensus 61 L~nFyQNHr~y~~S~s~~QL~G~~~~--~~~~~C~P~~~~~~g~~i~PCGliA~S~FNDtf~l~~~----~~~~~~~~~g 134 (284)
|+|||||||||++|.|.+||+|+... ...+.|.|+.. .++|+||||||||||||||||+.... ++.+.++.+|
T Consensus 143 l~nFyQNhrRY~~S~d~dQl~Ge~~~~~~l~~nC~PL~~-nedK~~YPcGLIaNSmfNDtf~~~l~~i~Dts~Y~lttkg 221 (372)
T COG5035 143 LTNFYQNHRRYVKSFDEDQLRGEALKSDDLKSNCKPLSY-NEDKIIYPCGLIANSMFNDTFSSLLTGIEDTSNYNLTTKG 221 (372)
T ss_pred hHHHHHhhHHHHhccCHHHhcCcccccccccccCCcccc-cCCCeeecccccccccccccchhhccccccccccccccCC
Confidence 99999999999999999999999754 22368999998 45599999999999999999987542 3468899999
Q ss_pred cccCcccccccCCC-------CCCCCCcCCcccCCcccCCCCCCCCchhHHHhhhcCCCCchhhhhhhccc-cCCCCCEE
Q 023309 135 IAWKSDRDHKFGKE-------VFPSNFQNGTLIGGAHLNESIPLSKQEDLIVWMRTAALPTFRKLYGKIEV-DLEENDII 206 (284)
Q Consensus 135 Iaw~~D~~~kf~~~-------~~p~~w~~~~~~~~~~~~~~~~~~~ne~FivWMr~Aalp~FrKLYg~i~~-~L~~G~~y 206 (284)
|||++|+ ++|+++ ++||+|.+.+++|+.+-| -+++.++|.|+||||+||||+|+||++|... .|++| +|
T Consensus 222 IaW~sDr-~rykktkYn~sdIvpPPnW~k~ypdGYtd~N-iPDls~wE~Fq~WMrtAafP~F~KLa~~N~~d~l~~G-~Y 298 (372)
T COG5035 222 IAWESDR-HRYKKTKYNASDIVPPPNWAKMYPDGYTDDN-IPDLSTWEEFQNWMRTAAFPKFSKLAMRNVNDVLPPG-TY 298 (372)
T ss_pred ccchhhc-ccccCCCCChhhcCCCCchHhhCCCCCCccC-CCcchhHHHHHHHhhcccCchHHHHhcccccccCCCc-eE
Confidence 9999999 688764 789999999998876544 3678899999999999999999999999865 69999 69
Q ss_pred EEEEeeeecCcccCceEEEEEEeccccCcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 023309 207 DVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRN 280 (284)
Q Consensus 207 ~i~I~nnypv~~f~G~K~ivlst~s~~GgkN~fLgi~yiivG~i~~~~~i~~l~~~~~~~r~~gd~~~l~w~~~ 280 (284)
+++|+.||||.+|+|+|+|+|+|.|.+||||+||||+|||||++|.++|++|++.++++||+||||+||+|+..
T Consensus 299 ~lnI~l~fPv~~f~GtKsi~Ltt~SviGgkN~fLGI~ylivg~ical~~~if~~~~~f~pR~~~Dh~yLnw~~~ 372 (372)
T COG5035 299 QLNITLNFPVLEFNGTKSIVLTTNSVIGGKNYFLGIVYLIVGGICALLGLIFLIKWLFKPRKMADHSYLNWNME 372 (372)
T ss_pred EEEEEeecceeecCCceEEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHHHHHhhCCcccCCcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999863
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=89.81 E-value=0.29 Score=40.50 Aligned_cols=26 Identities=15% Similarity=0.292 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023309 241 GIAYLTVGGLCFFLALSFTIVYLVKP 266 (284)
Q Consensus 241 gi~yiivG~i~~~~~i~~l~~~~~~~ 266 (284)
.|+.||+|+++-++++++||.++++.
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888887777777653
No 5
>COG1470 Predicted membrane protein [Function unknown]
Probab=68.70 E-value=21 Score=36.08 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=27.4
Q ss_pred ccCCCCCEEEEEEeeeecCcccCceEEEEEEeccccC
Q 023309 198 VDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLG 234 (284)
Q Consensus 198 ~~L~~G~~y~i~I~nnypv~~f~G~K~ivlst~s~~G 234 (284)
.+-.+|+ |.+.|.-.=+...+..+=.+++-+.|--|
T Consensus 454 ~~a~aGd-Y~i~i~~ksDq~s~e~tlrV~V~~sS~st 489 (513)
T COG1470 454 EDAGAGD-YRITITAKSDQASSEDTLRVVVGQSSTST 489 (513)
T ss_pred CCCCCCc-EEEEEEEeeccccccceEEEEEeccccch
Confidence 4677886 99998877778888877777777776544
No 6
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=66.48 E-value=5.8 Score=33.14 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=34.7
Q ss_pred hhcCCCCchhhhhhhccccCCCCCEEEEEEeeeecCcccCceEEEEEEe
Q 023309 181 MRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLST 229 (284)
Q Consensus 181 Mr~Aalp~FrKLYg~i~~~L~~G~~y~i~I~nnypv~~f~G~K~ivlst 229 (284)
|+.|+-++|.=.-..-...|++| +|++.++-...-..|.-+|.|.|+.
T Consensus 84 ~~mAPNS~f~~~i~~~~~~lk~G-~Y~l~~~~~~~~~~W~f~k~F~It~ 131 (140)
T PF11797_consen 84 MQMAPNSNFNFPIPLGGKKLKPG-KYTLKITAKSGKKTWTFTKDFTITA 131 (140)
T ss_pred CEECCCCeEEeEecCCCcCccCC-EEEEEEEEEcCCcEEEEEEEEEECH
Confidence 45666666643222223589999 5999999888888888889988864
No 7
>PF12669 P12: Virus attachment protein p12 family
Probab=54.72 E-value=9.2 Score=27.44 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q 023309 246 TVGGLCFFLALSFTIVYLVKPRRLG 270 (284)
Q Consensus 246 ivG~i~~~~~i~~l~~~~~~~r~~g 270 (284)
|+|+|.+++++..++.++++.++-|
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4555554444433457777777766
No 8
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=54.57 E-value=20 Score=29.69 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=19.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 023309 238 DFLGIAYLTVGGLCFFLALSFTIVYLVKPR 267 (284)
Q Consensus 238 ~fLgi~yiivG~i~~~~~i~~l~~~~~~~r 267 (284)
...||++-|++++.+++.+++++++..++|
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467888888877777777666555555544
No 9
>PF10204 DuoxA: Dual oxidase maturation factor; InterPro: IPR018469 DuoxA (Dual oxidase maturation factor) is the essential protein necessary for the final release of DUOX2 (an NADPH:O2 oxidoreductase flavoprotein) from the endoplasmic reticulum. Dual oxidases (DUOX1 and DUOX2) constitute the catalytic core of the hydrogen peroxide generator, which generates H2O2 at the apical membrane of thyroid follicular cells, essential for iodination of thyroglobulin by thyroid peroxidases. DuoxA carries five membrane-integral regions including a reverse signal-anchor with external N terminus (type III) and two N-glycosylation sites []. It is conserved from nematodes to humans.; GO: 0015031 protein transport, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=44.75 E-value=19 Score=34.01 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Q 023309 245 LTVGGLCFFLALSFTIVYLVKPRRLG 270 (284)
Q Consensus 245 iivG~i~~~~~i~~l~~~~~~~r~~g 270 (284)
++.|.+|+++|+++++.++.+|.++.
T Consensus 246 LatGiLc~l~G~~i~~ld~~~p~~l~ 271 (281)
T PF10204_consen 246 LATGILCLLLGLIIVFLDYIRPHKLS 271 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 77999999999999999999997664
No 10
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=42.68 E-value=6.2 Score=32.32 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=2.0
Q ss_pred cccCceEEEEEEeccccCcCCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 023309 217 YSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLG 270 (284)
Q Consensus 217 ~~f~G~K~ivlst~s~~GgkN~fLgi~yiivG~i~~~~~i~~l~~~~~~~r~~g 270 (284)
..|.|+....|+.---.| +|.+.+|+|+++++-=|+..||-|
T Consensus 11 ~~~kg~~~syitAEEAaG------------IGiL~VILgiLLliGCWYckRRSG 52 (118)
T PF14991_consen 11 YPFKGKGHSYITAEEAAG------------IGILIVILGILLLIGCWYCKRRSG 52 (118)
T ss_dssp -----------------S------------SS----------------------
T ss_pred CccccCCcceeeHHHhcc------------ceeHHHHHHHHHHHhheeeeecch
Confidence 346777777777766666 677788888888888888777655
No 11
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=38.87 E-value=27 Score=28.54 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=17.9
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHH
Q 023309 236 KNDFLGIAYLTVGGLCFFLALSFTIVY 262 (284)
Q Consensus 236 kN~fLgi~yiivG~i~~~~~i~~l~~~ 262 (284)
|-..|+++.+++|+++++++++++..+
T Consensus 42 K~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 42 KSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455667777777777777776666554
No 12
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=36.95 E-value=37 Score=23.75 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 023309 242 IAYLTVGGLCFFLALSFTIVYLVKP 266 (284)
Q Consensus 242 i~yiivG~i~~~~~i~~l~~~~~~~ 266 (284)
+++++|++++++.-+.+++.+..|.
T Consensus 2 ~~~~iV~i~iv~~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 2 IAFLIVSIFIVMGLLGLSICTTLKA 26 (50)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhc
Confidence 3577888888888778888887764
No 13
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=36.09 E-value=35 Score=30.94 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH--------HHH--------hcCCCCCCCcc
Q 023309 238 DFLGIAYLTVGGLCFFLALSFTI--------VYL--------VKPRRLGDPSY 274 (284)
Q Consensus 238 ~fLgi~yiivG~i~~~~~i~~l~--------~~~--------~~~r~~gd~~~ 274 (284)
..+=|++||+|++.+|..++||- .++ ++||--||.-+
T Consensus 128 ~amLIClIIIAVLfLICT~LfLSTVVLANKVS~LKrskQ~gKRqpRSNGDFLA 180 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLLFLSTVVLANKVSSLKRSKQVGKRQPRSNGDFLA 180 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccceee
Confidence 34557788899988888887762 222 24788888743
No 14
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=34.80 E-value=29 Score=32.62 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023309 243 AYLTVGGLCFFLALSFTIVYLVKPRRL 269 (284)
Q Consensus 243 ~yiivG~i~~~~~i~~l~~~~~~~r~~ 269 (284)
+=|+||++..++.|+.|+.+++..||-
T Consensus 273 vPIaVG~~La~lvlivLiaYli~Rrr~ 299 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIAYLIGRRRS 299 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEeccc
Confidence 445577776666667777777765543
No 15
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=34.76 E-value=40 Score=32.05 Aligned_cols=29 Identities=3% Similarity=0.214 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 023309 241 GIAYLTVGGLCFFLALSFTIVYLVKPRRL 269 (284)
Q Consensus 241 gi~yiivG~i~~~~~i~~l~~~~~~~r~~ 269 (284)
.+..+++=+|.+|+-|++||+++++.|+|
T Consensus 259 ~aSiiaIliIVLIMvIIYLILRYRRKKKm 287 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILRYRRKKKM 287 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444445556666677788887776665
No 16
>PF07234 DUF1426: Protein of unknown function (DUF1426); InterPro: IPR009871 This family consists of several Banana bunchy top virus proteins of around 120 residues in length. Q9IGU4 from SWISSPROT is annotated a movement protein whereas most other family members are hypothetical. The function of this family is unknown.
Probab=32.56 E-value=57 Score=26.17 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=21.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 023309 238 DFLGIAYLTVGGLCFFLALSFTIVYLVK 265 (284)
Q Consensus 238 ~fLgi~yiivG~i~~~~~i~~l~~~~~~ 265 (284)
.|+|..|+.+..+.++++++|-+-+++|
T Consensus 16 LF~~AIFiAItIlYILLalL~EvPkYIK 43 (117)
T PF07234_consen 16 LFFGAIFIAITILYILLALLFEVPKYIK 43 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4778889999999999998886555443
No 17
>PF13120 DUF3974: Domain of unknown function (DUF3974)
Probab=32.52 E-value=49 Score=26.48 Aligned_cols=37 Identities=24% Similarity=0.629 Sum_probs=18.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCC
Q 023309 239 FLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRN 280 (284)
Q Consensus 239 fLgi~yiivG~i~~~~~i~~l~~~~~~~r~~gd~~~l~w~~~ 280 (284)
|+..+.+++|.+. ++|...+++-.+. |-..||||.++
T Consensus 3 f~~~vl~l~g~ll-ligftivvl~vyf----grk~ylswakp 39 (126)
T PF13120_consen 3 FIKMVLLLIGTLL-LIGFTIVVLLVYF----GRKFYLSWAKP 39 (126)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhhhhee----cceeeeeecCh
Confidence 4445555555544 3343333333333 44468999874
No 18
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=32.40 E-value=72 Score=26.29 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023309 241 GIAYLTVGGLCFFLALSFTIVYLVKPRR 268 (284)
Q Consensus 241 gi~yiivG~i~~~~~i~~l~~~~~~~r~ 268 (284)
++..+++|.+.+++|+++++.|+..+++
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~l~~~~~~~ 112 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYIILGFFCPIK 112 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 6777889999999999999999998776
No 19
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=32.23 E-value=64 Score=24.23 Aligned_cols=33 Identities=30% Similarity=0.483 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCCCcccc-cCC
Q 023309 247 VGGLCFFLALSFTIVYLVK-PRRLGDPSYLS-WNR 279 (284)
Q Consensus 247 vG~i~~~~~i~~l~~~~~~-~r~~gd~~~l~-w~~ 279 (284)
.|.+.+++++++++..=.. +|+-|+.++-| +|+
T Consensus 18 fG~vf~i~s~f~~I~~Nl~~~r~~ge~SAYSVFN~ 52 (71)
T PF10260_consen 18 FGPVFFILSGFYLIFTNLGTPRKPGELSAYSVFNK 52 (71)
T ss_pred hhHHHHHHHHHHHHHHcCCCCCCCCCccchhhhCC
Confidence 5666666666555544334 59999988766 564
No 20
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.41 E-value=57 Score=28.68 Aligned_cols=30 Identities=37% Similarity=0.566 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 023309 242 IAYLTVGGLCFFLALSFTIVYLVKPRRLGD 271 (284)
Q Consensus 242 i~yiivG~i~~~~~i~~l~~~~~~~r~~gd 271 (284)
.+.++.|++|+++|.+++.....+||+.+=
T Consensus 50 ~~cl~~gv~c~~l~~~lf~v~~~~~~kFal 79 (175)
T KOG2887|consen 50 GICLAGGVLCFLLAMVLFPVLVVSPRKFAL 79 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccceeeh
Confidence 345668999999999999888888988763
No 21
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=28.39 E-value=80 Score=26.29 Aligned_cols=23 Identities=4% Similarity=0.034 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 023309 243 AYLTVGGLCFFLALSFTIVYLVK 265 (284)
Q Consensus 243 ~yiivG~i~~~~~i~~l~~~~~~ 265 (284)
+-++.+++|+++|+++|..-+..
T Consensus 38 siL~Ls~vvlvi~~~LLgrsi~A 60 (125)
T PF15048_consen 38 SILALSFVVLVISFFLLGRSIQA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Confidence 45778889999999998877764
No 22
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=27.46 E-value=1e+02 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=21.3
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 023309 236 KNDFLGIAYLTVGGLCFFLALSFTIVYLV 264 (284)
Q Consensus 236 kN~fLgi~yiivG~i~~~~~i~~l~~~~~ 264 (284)
-...+--+++|+++++.++.+.|++..++
T Consensus 90 d~~~l~R~~~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 90 DSPMLKRALYVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34466677788888888888888776654
No 23
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=26.68 E-value=99 Score=21.40 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=12.7
Q ss_pred ccCCCCCEEEEEEeeeecCccc
Q 023309 198 VDLEENDIIDVILENNYNTYSF 219 (284)
Q Consensus 198 ~~L~~G~~y~i~I~nnypv~~f 219 (284)
..|++| +|+|.|...-+...+
T Consensus 34 ~~L~~G-~Y~l~V~a~~~~~~~ 54 (66)
T PF07495_consen 34 TNLPPG-KYTLEVRAKDNNGKW 54 (66)
T ss_dssp ES--SE-EEEEEEEEEETTS-B
T ss_pred EeCCCE-EEEEEEEEECCCCCc
Confidence 589999 599999755443333
No 24
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=26.39 E-value=1e+02 Score=24.25 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=19.2
Q ss_pred cCcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 023309 233 LGGKNDFLGIAYLTVGGLCFFLALSFTIVYL 263 (284)
Q Consensus 233 ~GgkN~fLgi~yiivG~i~~~~~i~~l~~~~ 263 (284)
+|-.-.-||+-|+++.++.+++-+.+++-..
T Consensus 26 ~~n~~~~Lgm~~lvI~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 26 FVNNWPNLGMWFLVICGIFILLVILWFVCCK 56 (94)
T ss_pred ecCCCCccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4433445788888887776666555554443
No 25
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=26.15 E-value=52 Score=30.63 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=29.3
Q ss_pred ccccCc-CCcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 023309 230 TSWLGG-KNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLG 270 (284)
Q Consensus 230 ~s~~Gg-kN~fLgi~yiivG~i~~~~~i~~l~~~~~~~r~~g 270 (284)
.|..|. -..-=+|+|+++|.+++++|+.+.+.-+..-+..|
T Consensus 186 vSSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~ 227 (256)
T PF09788_consen 186 VSSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYG 227 (256)
T ss_pred eccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcC
Confidence 455564 23345788999999999999999877766555544
No 26
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=25.94 E-value=25 Score=25.91 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=0.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC
Q 023309 247 VGGLCFFLALSFTIVYLVKPRRL 269 (284)
Q Consensus 247 vG~i~~~~~i~~l~~~~~~~r~~ 269 (284)
+|.+|.++-+ +++.|.++.|..
T Consensus 20 vgll~ailLI-lf~iyR~rkkdE 41 (64)
T PF01034_consen 20 VGLLFAILLI-LFLIYRMRKKDE 41 (64)
T ss_dssp ------------------S----
T ss_pred HHHHHHHHHH-HHHHHHHHhcCC
Confidence 3333433333 333344444433
No 27
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=25.52 E-value=2.4e+02 Score=30.91 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=29.8
Q ss_pred cCCCCCEEEEEEeeeecC--cccCceEEEEEEeccc----cCcCCcchhHHHHHHHHHHHHHHHHH
Q 023309 199 DLEENDIIDVILENNYNT--YSFSGKKKLVLSTTSW----LGGKNDFLGIAYLTVGGLCFFLALSF 258 (284)
Q Consensus 199 ~L~~G~~y~i~I~nnypv--~~f~G~K~ivlst~s~----~GgkN~fLgi~yiivG~i~~~~~i~~ 258 (284)
+|.+|+.|.+.|--+-+. -.|+++-.+ .|..- ..+.+.-|-+.-+++|++.++++++.
T Consensus 504 gL~p~t~YvfqVRarT~aG~G~~S~~~~f--qT~~~~~~~~~~~~l~~i~g~~~~~v~~lll~~vv 567 (996)
T KOG0196|consen 504 GLKPGTVYVFQVRARTAAGYGPYSGKHEF--QTLPSESSSQSGEQLPLIIGSILAGVVFLLLAAVV 567 (996)
T ss_pred ccCCCcEEEEEEEEecccCCCCCCCceee--eecCcccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 699999999999766333 345444333 33222 23333333334444444444444433
No 28
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=25.42 E-value=83 Score=30.66 Aligned_cols=30 Identities=7% Similarity=0.227 Sum_probs=18.7
Q ss_pred hhHHHHHHH--HHHHHHHHHHHHHHHhcCCCC
Q 023309 240 LGIAYLTVG--GLCFFLALSFTIVYLVKPRRL 269 (284)
Q Consensus 240 Lgi~yiivG--~i~~~~~i~~l~~~~~~~r~~ 269 (284)
-+|.+-|++ +|.+++-+++||+++++.++|
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKKKM 341 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKKKM 341 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 344444444 445555777888888877765
No 29
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=24.31 E-value=1.9e+02 Score=19.63 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 023309 244 YLTVGGLCFFLALSFTIVYLVKPRRLGDPS 273 (284)
Q Consensus 244 yiivG~i~~~~~i~~l~~~~~~~r~~gd~~ 273 (284)
+++.-++.+.+..+.++.+-.|..+.-|..
T Consensus 5 ~lip~sl~l~~~~l~~f~Wavk~GQfdD~e 34 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLWAVKSGQFDDLE 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCCc
Confidence 444444455555555666667888877764
No 30
>PF07413 Herpes_UL37_2: Betaherpesvirus immediate-early glycoprotein UL37; InterPro: IPR010880 This family consists of several Betaherpesvirus immediate-early glycoprotein UL37 sequences. The human cytomegalovirus (HCMV) UL37 immediate-early regulatory protein is a type I integral membrane N-glycoprotein which traffics through the ER and the Golgi network [].
Probab=24.20 E-value=1.3e+02 Score=28.38 Aligned_cols=44 Identities=9% Similarity=0.284 Sum_probs=28.7
Q ss_pred cCceEEEEEEeccccCcCC--cchhHHHHHHHHHHHHHHHHHHHHH
Q 023309 219 FSGKKKLVLSTTSWLGGKN--DFLGIAYLTVGGLCFFLALSFTIVY 262 (284)
Q Consensus 219 f~G~K~ivlst~s~~GgkN--~fLgi~yiivG~i~~~~~i~~l~~~ 262 (284)
+.+.++.++...+--+|.= -.+|+++++.|++.+++-+.++.+.
T Consensus 222 ~~~~~~~~~~~~~~~l~~~~~~~~g~~~v~~G~~~lL~LFc~l~~~ 267 (276)
T PF07413_consen 222 WYRRVSFILRVDYRALGHWLAALIGMFFVASGAFMLLSLFCCLSIW 267 (276)
T ss_pred hccceeEEEecCCcchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 5566776666655555544 5688888888888777655554443
No 31
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=24.18 E-value=34 Score=32.39 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=18.7
Q ss_pred CcCCcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 023309 234 GGKNDFLGIAYLTVGGLCFFLALSFTIVYLVK 265 (284)
Q Consensus 234 GgkN~fLgi~yiivG~i~~~~~i~~l~~~~~~ 265 (284)
-..+.++.++++|.|++.+++-.+|+++.+.+
T Consensus 272 S~s~~l~piil~IG~vl~i~~Ig~~ifK~~~~ 303 (305)
T PF04639_consen 272 SVSDSLLPIILIIGGVLLIVFIGYFIFKRLMN 303 (305)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhhheeeEeecc
Confidence 34577888888766665555544444433333
No 32
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=24.17 E-value=63 Score=29.07 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023309 242 IAYLTVGGLCFFLALSFTIVY 262 (284)
Q Consensus 242 i~yiivG~i~~~~~i~~l~~~ 262 (284)
|+.++.|++|+++++++.+-.
T Consensus 103 I~lv~~g~~lLla~~~~~~Y~ 123 (202)
T PF06365_consen 103 IALVTSGSFLLLAILLGAGYC 123 (202)
T ss_pred EehHHhhHHHHHHHHHHHHHH
Confidence 456778877777776665433
No 33
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.84 E-value=1.4e+02 Score=22.65 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCC
Q 023309 248 GGLCFFLALSFTIVYLVKPRRLGD 271 (284)
Q Consensus 248 G~i~~~~~i~~l~~~~~~~r~~gd 271 (284)
-++.+++|.+-++.|+...++.+.
T Consensus 11 ivf~ifVap~WL~lHY~sk~~~~~ 34 (75)
T PF06667_consen 11 IVFMIFVAPIWLILHYRSKWKSSQ 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC
Confidence 344556666778889887776654
No 34
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=23.55 E-value=1.2e+02 Score=22.30 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023309 242 IAYLTVGGLCFFLALSFTIVY 262 (284)
Q Consensus 242 i~yiivG~i~~~~~i~~l~~~ 262 (284)
+..+.+|++.+++.++.++.+
T Consensus 7 i~i~Gm~iVF~~L~lL~~~i~ 27 (79)
T PF04277_consen 7 IMIIGMGIVFLVLILLILVIS 27 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 35
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=23.49 E-value=80 Score=26.22 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 023309 243 AYLTVGGLCFFLALSFTIVYLVKP 266 (284)
Q Consensus 243 ~yiivG~i~~~~~i~~l~~~~~~~ 266 (284)
..=++|+++++++++|++.|+.|.
T Consensus 18 l~qv~~~L~lVl~lI~~~aWLlkR 41 (124)
T PRK11486 18 LLQVSGALIGIIALILAAAWLVKR 41 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888887764
No 36
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=23.26 E-value=82 Score=22.78 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=19.4
Q ss_pred CcCCcchhHHHHHHHHHHHHHHHHH
Q 023309 234 GGKNDFLGIAYLTVGGLCFFLALSF 258 (284)
Q Consensus 234 GgkN~fLgi~yiivG~i~~~~~i~~ 258 (284)
-|+..-=.+.|++.|++|.+.+++.
T Consensus 34 TG~~t~~t~~~ligG~va~ivGl~~ 58 (59)
T PF11381_consen 34 TGSPTDKTIWYLIGGAVAVIVGLFL 58 (59)
T ss_pred cCCCCchhHHHHHhHHHHHHHHHhh
Confidence 3555556788999999999998865
No 37
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=22.64 E-value=61 Score=22.76 Aligned_cols=24 Identities=25% Similarity=0.330 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 023309 240 LGIAYLTVGGLCFFLALSFTIVYL 263 (284)
Q Consensus 240 Lgi~yiivG~i~~~~~i~~l~~~~ 263 (284)
|-+.=+|++++.++++++.++.+-
T Consensus 14 LrigGLi~A~vlfi~Gi~iils~k 37 (50)
T PF02038_consen 14 LRIGGLIFAGVLFILGILIILSGK 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTH
T ss_pred hhccchHHHHHHHHHHHHHHHcCc
Confidence 455557788888888887776543
No 38
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=22.59 E-value=27 Score=25.73 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=0.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q 023309 243 AYLTVGGLCFFLALSFTIVYLVKPRRLGDPS 273 (284)
Q Consensus 243 ~yiivG~i~~~~~i~~l~~~~~~~r~~gd~~ 273 (284)
+=+|.|++..++.+++|+.-++...+--|--
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~rkkdEG 42 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRMRKKDEG 42 (64)
T ss_dssp -------------------------S-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3356677777777788888887777777664
No 39
>PTZ00046 rifin; Provisional
Probab=22.12 E-value=1.1e+02 Score=30.02 Aligned_cols=30 Identities=10% Similarity=0.254 Sum_probs=18.6
Q ss_pred hhHHHHHHHH--HHHHHHHHHHHHHHhcCCCC
Q 023309 240 LGIAYLTVGG--LCFFLALSFTIVYLVKPRRL 269 (284)
Q Consensus 240 Lgi~yiivG~--i~~~~~i~~l~~~~~~~r~~ 269 (284)
-+|.+-|++. |.|++-+++||+++++.++|
T Consensus 315 taIiaSiiAIvVIVLIMvIIYLILRYRRKKKM 346 (358)
T PTZ00046 315 TAIIASIVAIVVIVLIMVIIYLILRYRRKKKM 346 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 3455544444 44555777788888777665
No 40
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=21.43 E-value=1.2e+02 Score=23.89 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 023309 245 LTVGGLCFFLALSFTIVYLVKPRRLGD 271 (284)
Q Consensus 245 iivG~i~~~~~i~~l~~~~~~~r~~gd 271 (284)
++.|.+.+++|.+|.+.-+.|+.+-+|
T Consensus 15 li~GiiLL~~aCIfAfidfsK~~~~~~ 41 (92)
T PF05767_consen 15 LIGGIILLIAACIFAFIDFSKNTKPTD 41 (92)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCCCch
Confidence 346888888888888888888776555
No 41
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=20.80 E-value=2e+02 Score=17.84 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 023309 245 LTVGGLCFFLALSFTIVYLVKPR 267 (284)
Q Consensus 245 iivG~i~~~~~i~~l~~~~~~~r 267 (284)
.|+|++..++-+.+++.-++++-
T Consensus 5 vi~G~ilv~lLlgYLvyALi~aE 27 (29)
T PRK14748 5 VITGVLLVFLLLGYLVYALINAE 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc
Confidence 45677766666777777777654
No 42
>PHA02726 hypothetical protein; Provisional
Probab=20.11 E-value=1.4e+02 Score=23.35 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=16.9
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 023309 237 NDFLGIAYLTVGGLCFFLALS 257 (284)
Q Consensus 237 N~fLgi~yiivG~i~~~~~i~ 257 (284)
|+.|+|+|.|+|-++-++..+
T Consensus 7 npilsifYfiig~vs~l~~yl 27 (94)
T PHA02726 7 NPILNIFYFMIRKISGIISLL 27 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999887666543
No 43
>COG5488 Integral membrane protein [Function unknown]
Probab=20.09 E-value=1.2e+02 Score=26.12 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=22.9
Q ss_pred EEEeccccCcCCcchhHHHHHHHHHHHHHHHHHHHH
Q 023309 226 VLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 261 (284)
Q Consensus 226 vlst~s~~GgkN~fLgi~yiivG~i~~~~~i~~l~~ 261 (284)
+|+--..+|.+. .++.++++++.+++.+++|+.+
T Consensus 19 ll~p~rSlg~rg--f~~lm~~~~~~~~~v~~ff~~i 52 (164)
T COG5488 19 LLTPHRSLGPRG--FGVLMLALGILSLVVAIFFLVI 52 (164)
T ss_pred HhCcccccChhh--HHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556443 4677888888888888887754
No 44
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=20.04 E-value=17 Score=31.31 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=10.9
Q ss_pred cCCcchhHHHHHHHHHHHH
Q 023309 235 GKNDFLGIAYLTVGGLCFF 253 (284)
Q Consensus 235 gkN~fLgi~yiivG~i~~~ 253 (284)
.||..+|++--|.|.|.++
T Consensus 47 nknIVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLG 65 (154)
T ss_pred CccEEEEEEecccHHHHHH
Confidence 3566777776654444433
Done!