Query 023309
Match_columns 284
No_of_seqs 122 out of 519
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 04:39:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023309.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023309hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 73.5 7.1 0.00024 25.7 4.9 32 237-268 7-38 (44)
2 2ks1_B Epidermal growth factor 67.6 4.7 0.00016 26.5 3.1 31 238-268 9-39 (44)
3 1afo_A Glycophorin A; integral 54.0 15 0.00052 23.5 3.5 25 241-265 11-35 (40)
4 2jwa_A Receptor tyrosine-prote 48.1 23 0.00078 23.2 3.8 29 237-265 9-37 (44)
5 2k1k_A Ephrin type-A receptor 44.2 35 0.0012 21.5 4.1 24 242-265 13-36 (38)
6 2k9y_A Ephrin type-A receptor 34.7 44 0.0015 20.8 3.6 20 240-259 13-32 (41)
7 2knc_B Integrin beta-3; transm 32.0 52 0.0018 23.9 4.0 23 239-261 10-32 (79)
8 2jo1_A Phospholemman; FXYD1, N 29.4 43 0.0015 24.1 3.1 26 239-264 15-40 (72)
9 2jp3_A FXYD domain-containing 21.4 45 0.0015 23.8 1.9 25 240-264 17-41 (67)
10 3mp7_B Preprotein translocase 20.6 97 0.0033 21.5 3.5 21 240-260 37-57 (61)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=73.46 E-value=7.1 Score=25.68 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=21.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023309 237 NDFLGIAYLTVGGLCFFLALSFTIVYLVKPRR 268 (284)
Q Consensus 237 N~fLgi~yiivG~i~~~~~i~~l~~~~~~~r~ 268 (284)
....+|+=-|+|++.+++.+++++..+.+.|+
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 34456888888888887777666555555544
No 2
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=67.59 E-value=4.7 Score=26.54 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=21.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023309 238 DFLGIAYLTVGGLCFFLALSFTIVYLVKPRR 268 (284)
Q Consensus 238 ~fLgi~yiivG~i~~~~~i~~l~~~~~~~r~ 268 (284)
...+||--|+|++.+++.+++++..+.+.|+
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhH
Confidence 3456888888888887777766555555554
No 3
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=53.96 E-value=15 Score=23.48 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 023309 241 GIAYLTVGGLCFFLALSFTIVYLVK 265 (284)
Q Consensus 241 gi~yiivG~i~~~~~i~~l~~~~~~ 265 (284)
.++.++.|+.+-++++++++.+.++
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~ 35 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIR 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999888764
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=48.09 E-value=23 Score=23.23 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=17.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 023309 237 NDFLGIAYLTVGGLCFFLALSFTIVYLVK 265 (284)
Q Consensus 237 N~fLgi~yiivG~i~~~~~i~~l~~~~~~ 265 (284)
.+...|+=.++|.+++++..+.++.++.+
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RR 37 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKR 37 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheeh
Confidence 44556788888866655555444545443
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=44.24 E-value=35 Score=21.49 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 023309 242 IAYLTVGGLCFFLALSFTIVYLVK 265 (284)
Q Consensus 242 i~yiivG~i~~~~~i~~l~~~~~~ 265 (284)
|+=+++|++..++.++.++..+.+
T Consensus 13 IAGiVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeeeehHHHHHHHHHHHHHHHHee
Confidence 556667766555444444433333
No 6
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=34.72 E-value=44 Score=20.75 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 023309 240 LGIAYLTVGGLCFFLALSFT 259 (284)
Q Consensus 240 Lgi~yiivG~i~~~~~i~~l 259 (284)
.+|+-.+++++.++++++++
T Consensus 13 ~~I~~~vv~Gv~ll~~iv~~ 32 (41)
T 2k9y_A 13 LAVIGGVAVGVVLLLVLAGV 32 (41)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhHHHHHHHHHHHH
Confidence 34565666666665544443
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.98 E-value=52 Score=23.94 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 023309 239 FLGIAYLTVGGLCFFLALSFTIV 261 (284)
Q Consensus 239 fLgi~yiivG~i~~~~~i~~l~~ 261 (284)
.++|+.-++|++.++..+++++.
T Consensus 10 ~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 45566555666554444444443
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=29.41 E-value=43 Score=24.09 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Q 023309 239 FLGIAYLTVGGLCFFLALSFTIVYLV 264 (284)
Q Consensus 239 fLgi~yiivG~i~~~~~i~~l~~~~~ 264 (284)
.|-+.=||++++.|+++|++++..-.
T Consensus 15 tLRiGGLifA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHcCcc
Confidence 35556678899999999988887744
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=21.42 E-value=45 Score=23.75 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 023309 240 LGIAYLTVGGLCFFLALSFTIVYLV 264 (284)
Q Consensus 240 Lgi~yiivG~i~~~~~i~~l~~~~~ 264 (284)
|-+.=||++++.|++|+++++..-.
T Consensus 17 LRigGLifA~vLfi~GI~iilS~kc 41 (67)
T 2jp3_A 17 LQLGGLIFGGLLCIAGIALALSGKC 41 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred heecchhhHHHHHHHHHHHHHcCcc
Confidence 4555578888999999988877643
No 10
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=20.59 E-value=97 Score=21.46 Aligned_cols=21 Identities=10% Similarity=0.320 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 023309 240 LGIAYLTVGGLCFFLALSFTI 260 (284)
Q Consensus 240 Lgi~yiivG~i~~~~~i~~l~ 260 (284)
.|+.++++|.+.+++-+++.+
T Consensus 37 ~~iG~~i~G~iGf~Ikli~~~ 57 (61)
T 3mp7_B 37 TGLGIILIGLIGMLIRIVGIL 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777666544
Done!