Query 023309
Match_columns 284
No_of_seqs 122 out of 519
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 04:39:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023309.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023309hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x4la1 g.39.1.3 (A:8-36) Four 42.1 2 0.00015 24.2 -0.4 19 215-233 7-25 (29)
2 d1x68a1 g.39.1.3 (A:8-36) Four 38.1 4 0.00029 22.9 0.4 18 215-232 7-24 (29)
3 d2axth1 f.23.33.1 (H:2-65) Pho 24.3 60 0.0044 21.1 4.6 32 247-278 30-62 (64)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 22.9 55 0.004 17.7 3.5 20 249-268 9-28 (30)
5 d2h80a1 a.60.1.3 (A:11-81) Del 18.8 13 0.00096 24.9 0.3 20 176-195 13-32 (71)
6 d2dkya1 a.60.1.3 (A:8-85) Dele 17.8 17 0.0012 24.7 0.7 20 176-195 18-37 (78)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 13.1 1.5E+02 0.011 20.1 5.0 28 241-268 31-58 (100)
8 d1rh5b_ f.23.28.1 (B:) Preprot 10.8 1.2E+02 0.0089 19.1 3.5 18 241-258 31-48 (56)
9 d2vkwa2 b.1.2.1 (A:601-693) Ne 9.8 1.8E+02 0.013 18.3 4.5 32 198-230 61-92 (93)
10 d2nuja1 d.38.1.1 (A:3-161) Hyp 9.7 1.1E+02 0.0083 21.8 3.6 67 172-239 41-107 (159)
No 1
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.06 E-value=2 Score=24.23 Aligned_cols=19 Identities=16% Similarity=0.412 Sum_probs=16.5
Q ss_pred cCcccCceEEEEEEecccc
Q 023309 215 NTYSFSGKKKLVLSTTSWL 233 (284)
Q Consensus 215 pv~~f~G~K~ivlst~s~~ 233 (284)
|+..++|.|+|-+....|-
T Consensus 7 PItg~gg~kyisFE~R~WH 25 (29)
T d1x4la1 7 PISGLGGTKYISFEERQWH 25 (29)
T ss_dssp CCCCSSSCSCEECSSCEEC
T ss_pred cccccCCceEEEeeccccc
Confidence 7889999999999888773
No 2
>d1x68a1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.09 E-value=4 Score=22.92 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=15.7
Q ss_pred cCcccCceEEEEEEeccc
Q 023309 215 NTYSFSGKKKLVLSTTSW 232 (284)
Q Consensus 215 pv~~f~G~K~ivlst~s~ 232 (284)
|+..++|.|+|-+....|
T Consensus 7 PItg~gG~k~isFedR~W 24 (29)
T d1x68a1 7 PISGLTGAKFICFQDSQW 24 (29)
T ss_dssp CCCTTTTCCEEEETTEEE
T ss_pred cccccCCceEEEeehhhc
Confidence 788999999999887766
No 3
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=24.33 E-value=60 Score=21.07 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=22.4
Q ss_pred HHHHHHHHHH-HHHHHHHhcCCCCCCCcccccC
Q 023309 247 VGGLCFFLAL-SFTIVYLVKPRRLGDPSYLSWN 278 (284)
Q Consensus 247 vG~i~~~~~i-~~l~~~~~~~r~~gd~~~l~w~ 278 (284)
+|++..++++ +.++.+++++--+-|.-..+|+
T Consensus 30 Mgv~m~Lf~vfl~iiLeiYNss~lldgv~v~W~ 62 (64)
T d2axth1 30 MAVFMGLFLVFLLIILEIYNSTLILDGVNVSWK 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCTTTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHhccceeecccccccc
Confidence 3444444443 4467788899999999999996
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.91 E-value=55 Score=17.74 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 023309 249 GLCFFLALSFTIVYLVKPRR 268 (284)
Q Consensus 249 ~i~~~~~i~~l~~~~~~~r~ 268 (284)
.+.+++++.|+.+.+.-|-+
T Consensus 9 ifac~i~lfffaiffreppr 28 (30)
T d2axtt1 9 IFACIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCC
Confidence 34556677776666655433
No 5
>d2h80a1 a.60.1.3 (A:11-81) Deleted in Liver Cancer 2, DLC2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.83 E-value=13 Score=24.89 Aligned_cols=20 Identities=30% Similarity=0.830 Sum_probs=16.4
Q ss_pred hHHHhhhcCCCCchhhhhhh
Q 023309 176 DLIVWMRTAALPTFRKLYGK 195 (284)
Q Consensus 176 ~FivWMr~Aalp~FrKLYg~ 195 (284)
+=--|+|.|+||-+..||.-
T Consensus 13 eAC~WLraaGFpqYAqlyEd 32 (71)
T d2h80a1 13 EACDWLRAAGFPQYAQLYED 32 (71)
T ss_dssp HHHHHHHHTTCHHHHHTTTT
T ss_pred HHHHHHHHcCChHHHHHhhh
Confidence 34579999999999988853
No 6
>d2dkya1 a.60.1.3 (A:8-85) Deleted in liver cancer 1 protein, DLC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.77 E-value=17 Score=24.75 Aligned_cols=20 Identities=25% Similarity=0.800 Sum_probs=16.6
Q ss_pred hHHHhhhcCCCCchhhhhhh
Q 023309 176 DLIVWMRTAALPTFRKLYGK 195 (284)
Q Consensus 176 ~FivWMr~Aalp~FrKLYg~ 195 (284)
+=--|+|.|+||-+..||.-
T Consensus 18 eAC~WLraaGFpqYAqlyEd 37 (78)
T d2dkya1 18 EACDWLRATGFPQYAQLYED 37 (78)
T ss_dssp HHHHHHHHHTCTTHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHhhc
Confidence 34579999999999999864
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=13.06 E-value=1.5e+02 Score=20.14 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 023309 241 GIAYLTVGGLCFFLALSFTIVYLVKPRR 268 (284)
Q Consensus 241 gi~yiivG~i~~~~~i~~l~~~~~~~r~ 268 (284)
.+..++++...++.++++.+...++.|+
T Consensus 31 ~v~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 31 FILVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 4455556666666666665555555444
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.81 E-value=1.2e+02 Score=19.05 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023309 241 GIAYLTVGGLCFFLALSF 258 (284)
Q Consensus 241 gi~yiivG~i~~~~~i~~ 258 (284)
|+-++++|.|-+++-+++
T Consensus 31 ~iG~~i~G~IGf~I~li~ 48 (56)
T d1rh5b_ 31 ALGISLLGIIGYIIHVPA 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666666555444
No 9
>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.85 E-value=1.8e+02 Score=18.25 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=19.0
Q ss_pred ccCCCCCEEEEEEeeeecCcccCceEEEEEEec
Q 023309 198 VDLEENDIIDVILENNYNTYSFSGKKKLVLSTT 230 (284)
Q Consensus 198 ~~L~~G~~y~i~I~nnypv~~f~G~K~ivlst~ 230 (284)
.+|.+|+.|+|.|.-. +..-.+---.+++.|.
T Consensus 61 ~~L~p~t~Y~~~V~A~-N~~G~s~ps~~~~~T~ 92 (93)
T d2vkwa2 61 KSLDWNAEYEVYVVAE-NQQGKSKAAHFVFRTA 92 (93)
T ss_dssp CSCCTTCEEEEEEEEE-ETTEECCCEEEEEECC
T ss_pred eccccceEEEEEEEEE-cCCCCcCCEeEEEEec
Confidence 4799998899998644 2222322234455543
No 10
>d2nuja1 d.38.1.1 (A:3-161) Hypothetical protein Jann_1972 {Jannaschia sp. CCS1 [TaxId: 290400]}
Probab=9.75 E-value=1.1e+02 Score=21.76 Aligned_cols=67 Identities=9% Similarity=0.029 Sum_probs=42.9
Q ss_pred CCchhHHHhhhcCCCCchhhhhhhccccCCCCCEEEEEEeeeecCcccCceEEEEEEeccccCcCCcc
Q 023309 172 SKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDF 239 (284)
Q Consensus 172 ~~ne~FivWMr~Aalp~FrKLYg~i~~~L~~G~~y~i~I~nnypv~~f~G~K~ivlst~s~~GgkN~f 239 (284)
+.|-.+..||..|...-|+++..-.......| -..++++-.|--..+-|.+..|-+....+|++...
T Consensus 41 v~n~~Y~~~~e~ar~~~l~~~g~~~~~~~~~~-~vv~~~~i~y~~p~~~gd~v~v~~~v~~~~~~s~~ 107 (159)
T d2nuja1 41 VNHTAYLRWYESFRLPFLKARHVTDYGPTSPR-LVLKQVHCTYLAEMGMGEDYVITGRVSNFRTTSFT 107 (159)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTTSCCCSSSSCE-EEEEEEEEEECSCCCTTCEEEEEEEEEEECSSEEE
T ss_pred eehHHHHHHHHHHHHHHHHHhhhhcccchhcc-eeeeEEEEEEecccccCcEEEEEEEEEecCCcEEE
Confidence 46789999999888877777653222222222 23344455566666678888777777778876544
Done!