BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023310
         (284 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VWC|A Chain A, High Resolution Structure Of Proteinase Inhibitor From
           Coprinopsis Cinerea
          Length = 149

 Score = 35.4 bits (80), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 112 ILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFE 171
           +   V  +   R  A+DR ++ +++R            + PE     N + V     A+ 
Sbjct: 9   VTSKVNGLHVGRPLAEDRSLLPKRIR------------VLPEDNNSGNSWVVEKDDDAYI 56

Query: 172 LGCTVCPVAIKYNKIFVDAFWNSRKQS-------------FTMHLLQLMTSWAVVCDVWY 218
           L C   PVA +  K+F D   N   +              FT+        W V  D   
Sbjct: 57  LYCKGAPVAPQEGKLFADLLGNMEDKKWIVTHQPQHGENVFTVVNASTEHGWVVPADAEE 116

Query: 219 LEPQTLRPGETAIEFAER 236
           L+   +RP   A  +  R
Sbjct: 117 LQQVEVRPLIAAPSYPPR 134


>pdb|3N0K|A Chain A, Proteinase Inhibitor From Coprinopsis Cinerea
          Length = 150

 Score = 35.4 bits (80), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 25/138 (18%)

Query: 112 ILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFE 171
           +   V  +   R  A+DR ++ +++R            + PE     N + V     A+ 
Sbjct: 10  VTSKVNGLHVGRPLAEDRSLLPKRIR------------VLPEDNNSGNSWVVEKDDDAYI 57

Query: 172 LGCTVCPVAIKYNKIFVDAFWNSRKQS-------------FTMHLLQLMTSWAVVCDVWY 218
           L C   PVA +  K+F D   N   +              FT+        W V  D   
Sbjct: 58  LYCKGAPVAPQEGKLFADLLGNMEDKKWIVTHQPQHGENVFTVVNASTEHGWVVPADAEE 117

Query: 219 LEPQTLRPGETAIEFAER 236
           L+   +RP   A  +  R
Sbjct: 118 LQQVEVRPLIAAPSYPPR 135


>pdb|2K5E|A Chain A, Solution Structure Of Putative Uncharacterized Protein
           Gsu1278 From Methanocaldococcus Jannaschii, Northeast
           Structural Genomics Consortium (Nesg) Target Gsr195
          Length = 73

 Score = 29.6 bits (65), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 94  FAVIMQKHPGWVGLLQSTILESVGCI 119
           FA  +Q HPG  G+L+S  L  +GC+
Sbjct: 11  FAQALQTHPGVAGVLRSYNLGCIGCM 36


>pdb|1G3N|C Chain C, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
 pdb|1G3N|G Chain G, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
          Length = 257

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 175 TVCPVAIKYNKIFV-------DAFWNSRKQSFTMHLLQLMTSWAV-VCDVWYLEPQ 222
           T+C   I YN + +       D+ + + +QS T H+ +L+ +W   VC  + LEP 
Sbjct: 15  TLCEDRIFYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPN 70


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,314,536
Number of Sequences: 62578
Number of extensions: 320476
Number of successful extensions: 888
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 5
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)