Query 023310
Match_columns 284
No_of_seqs 167 out of 1875
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 04:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023310.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023310hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.8 2.7E-22 9.3E-27 174.5 3.4 180 60-248 111-344 (367)
2 2lnd_A De novo designed protei 22.4 67 0.0023 21.2 2.7 35 133-170 40-74 (112)
3 3ci9_A Heat shock factor-bindi 18.7 1.6E+02 0.0054 17.3 4.2 16 268-283 20-35 (48)
4 1gng_X Frattide, glycogen synt 15.9 36 0.0012 18.9 0.2 14 270-283 22-35 (39)
5 3ivz_A Nitrilase; alpha-beta s 14.6 1.3E+02 0.0043 24.3 3.4 26 130-157 21-46 (262)
6 3h16_A TIR protein; bacteria T 12.5 2.4E+02 0.0083 20.6 4.2 86 133-242 64-153 (154)
7 3hkx_A Amidase; alpha-beta-BET 12.3 1.8E+02 0.0062 23.7 3.8 26 130-157 40-65 (283)
8 3p8k_A Hydrolase, carbon-nitro 11.8 1.4E+02 0.0048 24.4 2.9 24 132-157 42-65 (281)
9 2w1v_A Nitrilase-2, nitrilase 11.4 1.9E+02 0.0064 23.4 3.6 26 130-157 22-47 (276)
10 1uf5_A N-carbamyl-D-amino acid 10.7 2E+02 0.0069 23.5 3.6 26 130-157 25-50 (303)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.84 E-value=2.7e-22 Score=174.46 Aligned_cols=180 Identities=9% Similarity=0.069 Sum_probs=122.3
Q ss_pred EEEeC-------CCCCC-CCCeEEEeCCChhhHHHHHhhhc---------cceeeeecCccchh---hhHHHHHHhhcee
Q 023310 60 VKYHG-------PRPSM-RPKQVFVANHTSMIDFIILEQMT---------AFAVIMQKHPGWVG---LLQSTILESVGCI 119 (284)
Q Consensus 60 ~~~~g-------~~~~~-~~~~i~v~NH~S~~D~~~l~~~~---------~~~~~~~~~~~~~~---~~~g~~~~~~g~i 119 (284)
+++.| .++.+ ++++|++|||+|.+|++++..++ +..++++++....| |+ +.+ +.++|+
T Consensus 111 s~V~G~e~~~~~~E~l~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pf-s~g-~~l~cI 188 (367)
T 1iuq_A 111 SFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPF-SIG-RNLICV 188 (367)
T ss_dssp CEEECHHHHHHHHHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHH-HHT-SEEEEC
T ss_pred CEeecchhhhhHHhhccCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccch-hhh-hheeeE
Confidence 56888 55554 48999999999999999998886 46788888755322 23 544 556677
Q ss_pred Ee----e------cCChhhHHHHHHHHHHHHhcCCCCcEEEEeCccccCC----Cc--ccccccccc----c----cCCc
Q 023310 120 WF----N------RSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNN----HY--TVMFKKGAF----E----LGCT 175 (284)
Q Consensus 120 ~v----~------r~~~~~~~~~~~~~~~~l~~~~g~~l~iFPEGt~~~~----~~--l~~fk~Ga~----~----~~~p 175 (284)
+. + |++.+...++++++.+.++. +|.+++|||||||+++ +. ..+|++|++ . .++|
T Consensus 189 ~~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~-GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P 267 (367)
T 1iuq_A 189 YSKKHMFDIPELTETKRKANTRSLKEMALLLRG-GSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVP 267 (367)
T ss_dssp CCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHH-CCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSC
T ss_pred EecccCCCcchhhhhhhHHHHHHHHHHHHHHHc-CCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCC
Confidence 75 4 55555667778888888884 4789999999999995 44 456999988 3 4999
Q ss_pred --EEEEEEEccccccccccCCCchhHHHHHHHHHhcCceEEEEEEeCCCCCCC----C----CCHHHHHHHHHHHHHHhc
Q 023310 176 --VCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRP----G----ETAIEFAERVRDIISVRA 245 (284)
Q Consensus 176 --IvPv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~----~----~~~~~~~~~v~~~i~~~l 245 (284)
|+|++|... ..+.+ ....-..+..-....+..+.|++|+|+++++ . +..+++++.+++.|++.+
T Consensus 268 ~hIvPvaI~t~-~impp-----p~~ve~~~g~~r~i~~~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l~e~v~~~I~~~y 341 (367)
T 1iuq_A 268 GHLFPLALLCH-DIMPP-----PSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQY 341 (367)
T ss_dssp EEEEEEEEECG-GGSCC-----C----------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEec-cccCC-----cccccccccccceeecccEEEEECCccchhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999944 33221 0000001110001124578899999998752 1 224568889999998887
Q ss_pred CCC
Q 023310 246 GLK 248 (284)
Q Consensus 246 ~~~ 248 (284)
.+-
T Consensus 342 ~~l 344 (367)
T 1iuq_A 342 NVL 344 (367)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.42 E-value=67 Score=21.21 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=21.6
Q ss_pred HHHHHHHHhcCCCCcEEEEeCccccCCCcccccccccc
Q 023310 133 ARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAF 170 (284)
Q Consensus 133 ~~~~~~~l~~~~g~~l~iFPEGt~~~~~~l~~fk~Ga~ 170 (284)
++.+...++. +|.++++|-.|...+ ++..|+.-|.
T Consensus 40 irdiiksmkd-ngkplvvfvngasqn--dvnefqneak 74 (112)
T 2lnd_A 40 IRDIIKSMKD-NGKPLVVFVNGASQN--DVNEFQNEAK 74 (112)
T ss_dssp HHHHHHHHTT-CCSCEEEEECSCCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCeEEEEecCcccc--cHHHHHHHHH
Confidence 3334444444 899999999887653 3455555443
No 3
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=18.71 E-value=1.6e+02 Score=17.34 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhccC
Q 023310 268 RKQQSFAESVLRRLDE 283 (284)
Q Consensus 268 ~~~~~~~~~~~~~~~~ 283 (284)
.+-+.+..+|+.|+|+
T Consensus 20 ~kFq~mS~~I~~riDd 35 (48)
T 3ci9_A 20 DKFQTISDQIIGRIDD 35 (48)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666777777664
No 4
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=15.88 E-value=36 Score=18.88 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhccC
Q 023310 270 QQSFAESVLRRLDE 283 (284)
Q Consensus 270 ~~~~~~~~~~~~~~ 283 (284)
.-++.+|++|||.+
T Consensus 22 ~G~LIkEAVrRlq~ 35 (39)
T 1gng_X 22 SGNLIKEAVRRLHS 35 (39)
T ss_dssp HTCHHHHHHHHHHC
T ss_pred hCcHHHHHHHHHHH
Confidence 34567888888865
No 5
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=14.55 E-value=1.3e+02 Score=24.29 Aligned_cols=26 Identities=12% Similarity=0.255 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeCcccc
Q 023310 130 EIVARKLRDHVQGTDNNPLLIFPEGTCV 157 (284)
Q Consensus 130 ~~~~~~~~~~l~~~~g~~l~iFPEGt~~ 157 (284)
....+.+.+..+ .|--+++|||-..+
T Consensus 21 ~~~~~~i~~A~~--~gadlvvfPE~~~~ 46 (262)
T 3ivz_A 21 SKAEKLIKEASK--QGAQLVVLPELFDT 46 (262)
T ss_dssp HHHHHHHHHHHH--TTCSEEECCTTTTT
T ss_pred HHHHHHHHHHHH--CCCCEEEeCCCccc
Confidence 334444444444 67889999997654
No 6
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=12.55 E-value=2.4e+02 Score=20.55 Aligned_cols=86 Identities=9% Similarity=-0.009 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCCCcEEEEeCccccCCCccccccccc---cccCCcEEEEEEEccccccccccCCCchhHHHHHHHHHhc
Q 023310 133 ARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGA---FELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTS 209 (284)
Q Consensus 133 ~~~~~~~l~~~~g~~l~iFPEGt~~~~~~l~~fk~Ga---~~~~~pIvPv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (284)
.+.+.+.++. ....|+++=+......-....+.... -..+..|+||.+..++.-.. ..
T Consensus 64 ~~~i~~ai~~-s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~--~~---------------- 124 (154)
T 3h16_A 64 RRSIDKGLGS-SRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVA--SF---------------- 124 (154)
T ss_dssp HHHHHHHHTS-EEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTSCCCEEEEEESCCTGGGT--TT----------------
T ss_pred HHHHHHHHHh-CcEEEEEeCcchhcChHHHHHHHHHHHHHhcCCCEEEEEEecCCHHHHh--hC----------------
Confidence 3455555654 56678888776665443333332221 12356899998854332100 00
Q ss_pred CceEEEEEEeCCCCCC-CCCCHHHHHHHHHHHHH
Q 023310 210 WAVVCDVWYLEPQTLR-PGETAIEFAERVRDIIS 242 (284)
Q Consensus 210 ~~~~~~v~~~~p~~~~-~~~~~~~~~~~v~~~i~ 242 (284)
.-.+++.+..+ ...+.+++++.+.+.+.
T Consensus 125 -----~~~~~~~~~~~~~~~~~~~ia~~l~~lvr 153 (154)
T 3h16_A 125 -----SPTMADKLAFNTSTKSVDEIVADLMAIIR 153 (154)
T ss_dssp -----CCCCCSSCCEETTTSCHHHHHHHHHHHHC
T ss_pred -----CccHHHHHhhhcCcccHHHHHHHHHHHhc
Confidence 01234455443 45788888888887763
No 7
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=12.34 E-value=1.8e+02 Score=23.74 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeCcccc
Q 023310 130 EIVARKLRDHVQGTDNNPLLIFPEGTCV 157 (284)
Q Consensus 130 ~~~~~~~~~~l~~~~g~~l~iFPEGt~~ 157 (284)
....+.+.+..+ .|--+++|||-..+
T Consensus 40 ~~~~~~i~~A~~--~gadlvvfPE~~l~ 65 (283)
T 3hkx_A 40 DLIDDAAARASE--QGAQLLLTPELFGF 65 (283)
T ss_dssp HHHHHHHHHHHH--TTCSEEECCTTGGG
T ss_pred HHHHHHHHHHHH--CCCCEEEcCCCccc
Confidence 344444444445 57889999998765
No 8
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=11.79 E-value=1.4e+02 Score=24.42 Aligned_cols=24 Identities=8% Similarity=0.206 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCcccc
Q 023310 132 VARKLRDHVQGTDNNPLLIFPEGTCV 157 (284)
Q Consensus 132 ~~~~~~~~l~~~~g~~l~iFPEGt~~ 157 (284)
..+.+.+..+ .|--+++|||-..+
T Consensus 42 ~~~~i~~A~~--~gadlvvfPE~~l~ 65 (281)
T 3p8k_A 42 ITQWFEKNMN--AEVDVVVLPEMWNN 65 (281)
T ss_dssp HHHHHHHHCC--TTCCEEECCSSTTT
T ss_pred HHHHHHHHHh--CCCcEEEcCCCccC
Confidence 3333444333 67889999998665
No 9
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=11.44 E-value=1.9e+02 Score=23.39 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeCcccc
Q 023310 130 EIVARKLRDHVQGTDNNPLLIFPEGTCV 157 (284)
Q Consensus 130 ~~~~~~~~~~l~~~~g~~l~iFPEGt~~ 157 (284)
....+.+.+..+ .|--+++|||...+
T Consensus 22 ~~~~~~i~~a~~--~gadlvv~PE~~~~ 47 (276)
T 2w1v_A 22 TRACSLVREAAK--QGANIVSLPECFNS 47 (276)
T ss_dssp HHHHHHHHHHHH--TTCSEEECCTTTTS
T ss_pred HHHHHHHHHHHH--CCCCEEEcCCCccc
Confidence 333444444444 57789999997654
No 10
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=10.69 E-value=2e+02 Score=23.47 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeCcccc
Q 023310 130 EIVARKLRDHVQGTDNNPLLIFPEGTCV 157 (284)
Q Consensus 130 ~~~~~~~~~~l~~~~g~~l~iFPEGt~~ 157 (284)
....+.+.+..+ .|--+++|||...+
T Consensus 25 ~~~~~~i~~a~~--~gadlvv~PE~~~~ 50 (303)
T 1uf5_A 25 VRLLDMLTKAAS--RGANFIVFPELALT 50 (303)
T ss_dssp HHHHHHHHHHHH--TTCSEEECCTTTTS
T ss_pred HHHHHHHHHHHh--cCCCEEEecccccc
Confidence 333444444444 57789999997654
Done!