RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 023310
(284 letters)
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 587 bits (1515), Expect = 0.0
Identities = 244/277 (88%), Positives = 261/277 (94%), Gaps = 1/277 (0%)
Query: 8 RVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRP 67
RV++L IGWIIFLS+FIPVH LLKGH KLRKK+ER LVELICS FVASWTGV+KYHGPRP
Sbjct: 101 RVLLLAIGWIIFLSAFIPVHFLLKGH-KLRKKIERKLVELICSAFVASWTGVIKYHGPRP 159
Query: 68 SMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAK 127
S RPKQVFVANHTSMIDFI+LEQMT FAVIMQKHPGWVG LQ+TILESVGCIWFNR+EAK
Sbjct: 160 SRRPKQVFVANHTSMIDFIVLEQMTPFAVIMQKHPGWVGFLQNTILESVGCIWFNRTEAK 219
Query: 128 DREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKIF 187
DRE+VA+KLRDHVQ D NPLLIFPEGTCVNN YTVMFKKGAFELGCTVCP+AIKYNKIF
Sbjct: 220 DREVVAKKLRDHVQDPDRNPLLIFPEGTCVNNEYTVMFKKGAFELGCTVCPIAIKYNKIF 279
Query: 188 VDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRPGETAIEFAERVRDIISVRAGL 247
VDAFWNSRKQSFTMHLL+LMTSWAVVCDVWYLEPQTLRPGET IEFAERVRD+I+ RAGL
Sbjct: 280 VDAFWNSRKQSFTMHLLRLMTSWAVVCDVWYLEPQTLRPGETPIEFAERVRDMIAKRAGL 339
Query: 248 KKVPWDGYLKYSRPSPKHRERKQQSFAESVLRRLDEK 284
KKVPWDGYLKY RPSPKH E+KQQSFAES+LRRL+EK
Sbjct: 340 KKVPWDGYLKYYRPSPKHTEKKQQSFAESLLRRLEEK 376
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 280 bits (718), Expect = 1e-95
Identities = 86/212 (40%), Positives = 117/212 (55%), Gaps = 2/212 (0%)
Query: 48 ICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGL 107
A V+K HG ++ VANHTS ID +IL +++ +K G +
Sbjct: 1 ARVLLFAFGFYVIKVHGKPDPPEAPRIIVANHTSFIDPLILFSDLFPSIVAKKELGKLPF 60
Query: 108 LQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKK 167
+ TIL ++GCI+ +RSE KDR+ V ++++ + P+LIFPEGT N +MFKK
Sbjct: 61 IG-TILRALGCIFVDRSEPKDRKKVVEEIKERATDPNWPPILIFPEGTTTNGKALIMFKK 119
Query: 168 GAFELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTL-RP 226
GAFE G V PVAI+Y FVDAFWNS S M+L +L+T A V +V +L T
Sbjct: 120 GAFEPGVPVQPVAIRYPNKFVDAFWNSSGYSSLMYLFRLLTQPANVLEVEFLPVYTPSEE 179
Query: 227 GETAIEFAERVRDIISVRAGLKKVPWDGYLKY 258
GE EFA RVR I++ + GL W G K
Sbjct: 180 GEDPKEFANRVRLIMANKLGLPATDWTGEDKR 211
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 89.3 bits (222), Expect = 3e-22
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 60 VKYHGPRPSMRPKQ-VFVANHTSMIDFIIL-----EQMTAFAVIMQKHPGWVGLLQSTIL 113
V+ HG R + VANH S +D ++L ++ + + + L ++
Sbjct: 2 VRVHGLENLPRGGPAIVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPL-LGWLM 60
Query: 114 ESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL- 172
+GCI+ +R AKD L + ++ + +LIFPEGT + FKKGAF L
Sbjct: 61 RLLGCIFIDRKNAKDAANTLEYLVELLR--EGELVLIFPEGTRSRGGELLPFKKGAFRLA 118
Query: 173 ---GCTVCPVAIK 182
G + PVAI
Sbjct: 119 REAGVPIVPVAIS 131
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 78.9 bits (195), Expect = 2e-18
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 74 VFVANHTSMIDFIIL-----EQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKD 128
+ VANH S +D ++L ++ + +K +V LL +L +G I+ +RS
Sbjct: 2 LVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLL-GWLLRLLGAIFIDRSN--- 57
Query: 129 REIVARKLRDHVQGTDNN-PLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAIKY 183
LR+ V+ LLIFPEGT + FKKGA L G + PVAI+
Sbjct: 58 GRKARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIRG 117
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 62.7 bits (153), Expect = 5e-12
Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 35/203 (17%)
Query: 52 FVASWTGV-VKYHGPRPSMRPKQ-VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVG--- 106
+ GV V+ G + VANH S +D ++L + + +V
Sbjct: 3 LLLRLLGVRVRVEGLENLPPKGPVIIVANHQSYLDPLVL------GAALPRPIRFVAKKE 56
Query: 107 LLQ----STILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYT 162
L + +L +G I +R + R+ + ++ + ++IFPEGT +
Sbjct: 57 LFKIPFLGWLLRLLGAIPIDRGNGRSAREALREAIEALK--EGESVVIFPEGTRSRDGEL 114
Query: 163 VMFKKGAFEL----GCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWY 218
+ FK GAF L G + PVAI K+ V
Sbjct: 115 LPFKSGAFRLAKEAGVPIVPVAISGT----WGSLPKGKKLP----------RPGRVTVRI 160
Query: 219 LEPQTLRPGETAIEFAERVRDII 241
EP E A E + +R+ +
Sbjct: 161 GEPIPPEGLELAEEDRKELREKV 183
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 55.3 bits (133), Expect = 5e-09
Identities = 50/191 (26%), Positives = 75/191 (39%), Gaps = 24/191 (12%)
Query: 7 RRVIVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPR 66
R+ +L I I+FL +P+ + R L R L L+ + V + G
Sbjct: 1 LRLALLLILVILFLLLPLPLALIALFR-LRRPVLRRWLRFLVLLLLLLFGLRV-EVEGLE 58
Query: 67 PSMRPKQ-VFVANHTSMIDFIILE------QMTAFAV--IMQKHPGWVGLLQSTILESVG 117
+ + VANH S +D ++L F + K P +G L L +G
Sbjct: 59 NLPKGGPALVVANHQSFLDPLLLSLALPRRGPVRFVAKKELFKVP-LLGWL----LRLLG 113
Query: 118 CIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVM-FKKGAF----EL 172
I E D E + + G + L+IFPEGT ++ FK+GA E
Sbjct: 114 AI-PVDRENPDDETLRAAVARLKAGGRS--LVIFPEGTRSRGGEELLPFKRGAARLALEA 170
Query: 173 GCTVCPVAIKY 183
G + PVAI
Sbjct: 171 GVPIVPVAIVG 181
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 45.0 bits (107), Expect = 3e-06
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 74 VFVANHTSMIDFIILEQMTA--FAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREI 131
+ VANH S +D + L I +K W+ + + G I+ +R +
Sbjct: 19 LVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGIMLWLT-GAIFIDRENIRAIAT 77
Query: 132 VARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL----GCTVCPVAI 181
+ + ++ + +FPEGT + FKKGAF + G + PV +
Sbjct: 78 ALKAAIEVLK--QGRSIGVFPEGTRSRGRDILPFKKGAFHIAIKAGVPILPVVL 129
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 45.5 bits (108), Expect = 5e-06
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 19/157 (12%)
Query: 47 LICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMT-------AFAVIMQ 99
+ F VK P P P +FV+NH+S D +IL + + ++ +
Sbjct: 3 YLLLNFFGFVRLEVKGPPPPPGGGPV-LFVSNHSSWWDGLILFLLLERGLRRDVYGLMDE 61
Query: 100 KHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVN- 158
+ SV RS AK + VAR L + + IFPEGT
Sbjct: 62 ELLERYPFFTRLGAFSVDRDS-PRSAAKSLKYVARLLSKP-----GSVVWIFPEGTRTRR 115
Query: 159 NHYTVMFKKGAFELGC----TVCPVAIKYNKIFVDAF 191
+ + FK G L + PVA++Y + F
Sbjct: 116 DKRPLQFKPGVAHLAEKAGVPIVPVALRYTFELFEQF 152
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 39.5 bits (93), Expect = 7e-04
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 12/116 (10%)
Query: 50 SFFVASWTGV-VKYHGPRPSMRP-KQVFVANHTSMIDFIILEQMTAFA--------VIMQ 99
F +GV V +G P + + + ++NH S +D+++L M A ++++
Sbjct: 1 VFLFEWLSGVKVVVYGDEPKLPKERALIISNHRSEVDWLVL-WMLADRFGRLGRLKIVLK 59
Query: 100 KHPGWVGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGT 155
+ L I+ R KD + + R+L+ + LLIFPEGT
Sbjct: 60 DSLKYPPLGGWGWQLG-EFIFLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 35.1 bits (81), Expect = 0.021
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 20/126 (15%)
Query: 67 PSMRPKQVFVANHTSMIDFIILEQM-TAFAVIMQKH----P--GWVGLLQSTILESVGCI 119
PS V+V+NH S +D L + F I + P GW + G I
Sbjct: 46 PSPDEPAVYVSNHQSFLDIYTLFHLGRPFKFISKTSIFLIPIIGWAMYM-------TGHI 98
Query: 120 WFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFEL----GCT 175
R + + + ++ + ++ + FPEGT + FKKGAF + G
Sbjct: 99 PLKRMDRRSQLECLKRCMELLK--KGASVFFFPEGTRSKDGKLAAFKKGAFSVAAKTGVP 156
Query: 176 VCPVAI 181
V P+ +
Sbjct: 157 VVPITL 162
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 33.3 bits (77), Expect = 0.061
Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 23/139 (16%)
Query: 70 RPKQVF-VANHTSMIDFIILEQMTAFAV-----IMQKHPGWVGLLQSTILESVGCIWFNR 123
+PK V A HTS DF++ + AFA+ + KH + L + +G I +R
Sbjct: 19 KPKFVVIGAPHTSNWDFVLG-LLAAFALGLKISFLGKHSLFKPPL-GPFMRWLGGIPVDR 76
Query: 124 SEAKDR-EIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKG----AFELGCTVCP 178
S A E V + R + L I PEGT +K G A G +
Sbjct: 77 SRAGGLVEQVVEEFRRREEFV----LAIAPEGT---RSKVDKWKTGFYHIARGAGVPILL 129
Query: 179 VAIKYNK---IFVDAFWNS 194
V + Y + F S
Sbjct: 130 VYLDYKRKTVGIGPLFEPS 148
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 32.6 bits (75), Expect = 0.14
Identities = 24/113 (21%), Positives = 41/113 (36%), Gaps = 26/113 (23%)
Query: 74 VFVANH-TSMID-FIILEQM------TAFAVIMQKHP-GWVGLLQSTILESVGCIWFNR- 123
+F+ NH ++ID ++ + A A + + GW +LES G I R
Sbjct: 31 IFLGNHPNALIDPLLLAATLRRPVRFLAKADLFKNPLIGW-------LLESFGAIPVYRP 83
Query: 124 -------SEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGA 169
V + + ++ + IFPEG + + K GA
Sbjct: 84 KDLARGGIGKISNAAVFDAVGEALK--AGGAIGIFPEGGSHDRPRLLPLKAGA 134
>gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau;
Validated.
Length = 563
Score = 32.0 bits (73), Expect = 0.38
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 17 IIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVASW---TGVVKYHGPRPSMRPK 72
I+ L ++P H L+K L KL C+F V S T + P ++ +
Sbjct: 355 ILRLKDYVPNHELIKQIQDLESKLLEHAAPDSCNFDVGSDNESTDDLSPIPIDPPLKAE 413
>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
Length = 497
Score = 31.8 bits (72), Expect = 0.47
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 18/128 (14%)
Query: 59 VVKYHGPRPSMR--PKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQST---IL 113
+VK + P P + P +FV NH +++D ++ AV + + V S ++
Sbjct: 287 IVKGNPPPPPKKGQPGVLFVCNHRTVLDPVVT------AVALGRKISCVTYSISKFSELI 340
Query: 114 ESVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELG 173
+ + +R KD + R L + L+I PEGT + + F EL
Sbjct: 341 SPIKAVALSREREKDAANIKRLLEE-------GDLVICPEGTTCREPFLLRFSALFAELT 393
Query: 174 CTVCPVAI 181
+ PVAI
Sbjct: 394 DRIVPVAI 401
>gnl|CDD|240337 PTZ00261, PTZ00261, acyltransferase; Provisional.
Length = 355
Score = 29.1 bits (65), Expect = 2.6
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 49/197 (24%)
Query: 16 WIIFLSSF--IPVHSLLKGHDKLRK------KLER-CLVELICSFFVASWTGV-----VK 61
W + +++ +PV +L K D+L + ++R C++ L+ +F W +
Sbjct: 52 WFLLVNTATILPVSALTKLIDQLGRLGVPTYCVQRLCIIPLVVAFRAVWWLNPQIRMHLC 111
Query: 62 Y----HGPRPSM----RPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQST-- 111
+ HG S R +V NHTS D +T F ++ L++S+
Sbjct: 112 FDADEHGKPLSWDDISRHGCAYVGNHTSFWDVYAFIGLTPFRHLLNTRT----LMKSSLR 167
Query: 112 -------ILESVG--CIWFNRSEA------KDRE-IVARKLRDHVQGTDNNPLLIFPEGT 155
+ + VG + F K+++ V + + H++ + L FPEG
Sbjct: 168 KIPIFGGVFDRVGHFPVHFKSDSDGNFEVDKEKQAQVQQAIDAHLRLGGS--LAFFPEGA 225
Query: 156 CVNNHYTVM--FKKGAF 170
+N H V+ F+ G F
Sbjct: 226 -INKHPQVLQTFRYGTF 241
>gnl|CDD|233882 TIGR02474, pec_lyase, pectate lyase, PelA/Pel-15E family. Members
of this family are isozymes of pectate lyase (EC
4.2.2.2), also called polygalacturonic transeliminase
and alpha-1,4-D-endopolygalacturonic acid lyase [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 290
Score = 29.0 bits (65), Expect = 3.1
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 117 GCIWFNRSEAKDREIVARKLRDHVQGTDNNPLL 149
G WF+ S + V + +L
Sbjct: 211 GVAWFDTSRIRGYAYVKSDAAYPLVPEPGAKVL 243
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 28.3 bits (64), Expect = 3.2
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 60/151 (39%)
Query: 74 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGL--------------LQSTILESVGCI 119
V + H S +DF++L + I+ +GL + T+L +G
Sbjct: 25 VLLPTHRSYLDFLLL------SFILF----SLGLPLPHIAAGENLNIPILGTLLRRLGAF 74
Query: 120 WFNRSEAKD-------REIVARKLRDHVQGTDNNPLLIFPEGT----------------- 155
+ RS KD +E V L++ PL F EGT
Sbjct: 75 FIRRSFGKDPLYRAVLQEYVQELLKNGQ------PLEFFIEGTRSRTGKLLPPKLGLLSV 128
Query: 156 CVNNHYTVMFKKGAFELGCTVCPVAIKYNKI 186
V K + + PV+I Y+++
Sbjct: 129 VVE----AYLKGSVPD--VLIVPVSISYDRV 153
>gnl|CDD|215201 PLN02351, PLN02351, cytochromes b561 family protein.
Length = 242
Score = 28.7 bits (64), Expect = 3.3
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 10 IVLTIGWIIFLSSFIPVHSLLKGHDKLRKKLERCL--VELICSFFVASWTGVVKYHGPRP 67
+++ IG+I+ I VH L G K +K + L + L F WT K+HG
Sbjct: 56 LLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVF-GIWT---KFHGQDG 111
Query: 68 SMRPKQVFVANHTSMIDFIILEQMTAFA 95
VAN S+ ++ L ++ F
Sbjct: 112 -------IVANFYSLHSWMGLICVSLFG 132
>gnl|CDD|222220 pfam13559, DUF4129, Domain of unknown function (DUF4129). This
presumed domain is found at the C-terminus of proteins
that contain a transglutaminase core domain. The
function of this domain is unknown. The domain has a
conserved TXXE motif.
Length = 72
Score = 26.8 bits (60), Expect = 3.5
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 224 LRPGETAIEFAERVRD 239
RP ET EFA R+
Sbjct: 17 RRPSETPREFARRLAA 32
>gnl|CDD|178115 PLN02499, PLN02499, glycerol-3-phosphate acyltransferase.
Length = 498
Score = 29.0 bits (65), Expect = 3.5
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 59 VVKYHGPRPSMRPKQ--VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ--STILE 114
+VK P P+ +FV H +++D ++L V+ + P + S IL
Sbjct: 274 IVKGKPPPPASGGNSGVLFVCTHRTLMDPVVLS-----TVLGRSIPAVTYSISRLSEILS 328
Query: 115 SVGCIWFNRSEAKDREIVARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGC 174
+ + R R++ A K++ + D L++ PEGT + + F EL
Sbjct: 329 PIPTVRLTR----IRDVDAEKIKRELARGD---LVVCPEGTTCREPFLLRFSALFAELTD 381
Query: 175 TVCPVAIKY 183
+ PVA+ Y
Sbjct: 382 RIVPVAMNY 390
>gnl|CDD|237426 PRK13558, PRK13558, bacterio-opsin activator; Provisional.
Length = 665
Score = 28.6 bits (64), Expect = 4.4
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 225 RPGETAIEFAERVRDIISVR--AGLKKVPWDGYLKYSRPS 262
PGET EF + + ++ R L+K GY ++ R
Sbjct: 592 DPGETPDEFRASLENDLTDRQLTALQKAYVSGYFEWPRRV 631
>gnl|CDD|183061 PRK11260, PRK11260, cystine transporter subunit; Provisional.
Length = 266
Score = 27.8 bits (62), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 231 IEFAERVRDIISVRAGLKKVPWDGYL 256
+EFAE + + V+A LK WDG L
Sbjct: 68 VEFAEALAKHLGVKASLKPTKWDGML 93
>gnl|CDD|219207 pfam06864, PAP_PilO, Pilin accessory protein (PilO). This family
consists of several enterobacterial PilO proteins. The
function of PilO is unknown although it has been
suggested that it is a cytoplasmic protein in the
absence of other Pil proteins, but PilO protein is
translocated to the outer membrane in the presence of
other Pil proteins. Alternatively, PilO protein may form
a complex with other Pil protein(s). PilO has been
predicted to function as a component of the pilin
transport apparatus and thin-pilus basal body. This
family does not seem to be related to pfam04350.
Length = 414
Score = 27.8 bits (62), Expect = 6.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 223 TLRPGETAIEFAERVRDIISVRA 245
PG T +F++RVR+I
Sbjct: 267 ERTPGGTVADFSQRVREIFDQTP 289
>gnl|CDD|215320 PLN02588, PLN02588, glycerol-3-phosphate acyltransferase.
Length = 525
Score = 28.0 bits (62), Expect = 7.2
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 74 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQ--STILESVGCIWFNRSEAKDREI 131
+FV NH +++D + + ++A+ + L S +L + + R KD +
Sbjct: 330 LFVCNHRTLLDPLYI----SYALRKKNIKAVTYSLSRLSELLAPIKTVRLTRDRVKDGQA 385
Query: 132 VARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNKIF 187
+ + L QG L++ PEGT Y + F E+ + PVAI + F
Sbjct: 386 MEKLLS---QGD----LVVCPEGTTCREPYLLRFSPLFSEVCDVIVPVAIDSHVTF 434
>gnl|CDD|240389 PTZ00374, PTZ00374, dihydroxyacetone phosphate acyltransferase;
Provisional.
Length = 1108
Score = 27.9 bits (62), Expect = 7.4
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 16/93 (17%)
Query: 74 VFVANHTSMIDFIILEQMTAFAVIMQKHPGWV---------GLLQSTILESVGCIWFNRS 124
V + H S IDFII MT +M V G + +T++ G + RS
Sbjct: 632 VLLPLHRSYIDFII---MTYLLAVMGLPLPHVCAGDDFLRMGPI-ATLMRGSGAFFMRRS 687
Query: 125 EAKDREIVARKLRDHVQG--TDNNPLLIFPEGT 155
+D + A +++V+ PL F EGT
Sbjct: 688 -FRDDPLYAALFKEYVRHLVLRRRPLEFFIEGT 719
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and
modification].
Length = 552
Score = 27.6 bits (61), Expect = 9.6
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 23/114 (20%)
Query: 90 QMTAFAVIMQKHPGWVGLLQSTI------LESVGCI------------WFNRSEAKDREI 131
++TA + + W GL++S I LE+V I +N + E
Sbjct: 363 EITAMSSCEEDFLKWEGLVESKIRILVSKLEAVDDILYAHPFPKAFRKVYNCVAEESIEK 422
Query: 132 VARKLRDHVQGTDNNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKYNK 185
+ + V + + M + ++ CT + +
Sbjct: 423 IGSGVTLEVAYESTDHEKL---ANDTVPEEESM--EDGMKVYCTTFYIGLDVIP 471
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.440
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,778,352
Number of extensions: 1404834
Number of successful extensions: 1625
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1604
Number of HSP's successfully gapped: 37
Length of query: 284
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 188
Effective length of database: 6,679,618
Effective search space: 1255768184
Effective search space used: 1255768184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.2 bits)