RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023310
(284 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 5e-07
Identities = 46/290 (15%), Positives = 85/290 (29%), Gaps = 76/290 (26%)
Query: 26 VHSLLKGH---DKLRKKLERCLVELICSFFVASWTGVVKYHGPRPSMRP--KQVFVANHT 80
K + + KL + L+EL A + G + K +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELR----PAKNVLI---DG----VLGSGKTWVALD-- 169
Query: 81 SMIDFIILEQMTAFAVIMQKHPGWVGL-----------LQSTILESVGCIWFNRSEAKDR 129
+ + + +M F + W+ L + +L + W +RS+
Sbjct: 170 VCLSYKVQCKM-DFKIF------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 130 -----EIVARKLRDHVQGTD-NNPLLIFPEGTCVNNHYTVMFKKGAFELGCTVCPVAIKY 183
+ +LR ++ N LL+ V N AF L C + +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLN---VQNAKAW----NAFNLSCKI--LLTTR 273
Query: 184 NKIFVDAFWNSRKQSFTM-HLLQLMT---SWAVVCDVWYLEPQTLRPGETAIE------F 233
K D + ++ H +T +++ PQ L
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 234 AERVRDIISVRAGLKKVPWDGYLKYSRPSPKHRERKQQSFAESVLRRLDE 283
AE +RD ++ WD + + K + ES L L+
Sbjct: 334 AESIRDGLAT--------WDNWKHVNCD-------KLTTIIESSLNVLEP 368
Score = 32.1 bits (72), Expect = 0.20
Identities = 52/390 (13%), Positives = 99/390 (25%), Gaps = 146/390 (37%)
Query: 21 SSFIPVH-SLLKGHDKLRKKLER------------------CLV-------ELICSF-FV 53
F + S L+ + KLR+ L + ++ C F
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 54 ASWTGVVKYHGPRPSMRPKQ----VFVANHTSMIDFI------ILEQMTAFAVIMQKHPG 103
W + + P + Q N TS D I +++ P
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 104 WVGLLQSTILESV-----------GC-----------------------------IWFNR 123
LL +L +V C +
Sbjct: 244 ENCLL---VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 124 SEAKDREIVARKLRDHVQG-----TDNNPLLI------FPEGTCVNNHY-TVMFKK--GA 169
E K ++ + L Q NP + +G +++ V K
Sbjct: 301 DEVK--SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 170 FELGCTVC-PVAIK--YNK--IFVD----------AFWNSRKQSFTMHLLQLMTSWAVVC 214
E V P + +++ +F W +S M ++ + +++V
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV- 417
Query: 215 DVW-----------YLEPQTLRPGETAIEFAERVRDIISVRAGLKKV--------PWDGY 255
+ YLE + E A+ R I+ K D Y
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 256 ----LKYSRPSPKHRERKQQSFAESVLRRL 281
+ + H + + ++ R +
Sbjct: 473 FYSHIGH------HLKNIEHPERMTLFRMV 496
Score = 30.6 bits (68), Expect = 0.73
Identities = 26/161 (16%), Positives = 52/161 (32%), Gaps = 47/161 (29%)
Query: 26 VHSL---LKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPR----PSMRPKQV---- 74
+ S+ LK + L R +V+ Y+ P+ + P +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVD--------------HYNIPKTFDSDDLIPPYLDQYF 473
Query: 75 --FVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAKDREIV 132
+ +H I+ E+MT F ++ + L+ I W +
Sbjct: 474 YSHIGHHLKNIEHP--ERMTLFRMVFLDF-RF---LEQKI-RHDSTAWNASGSILNTLQQ 526
Query: 133 ARKLRDHVQGTDNNP--------LLIF---PEGTCVNNHYT 162
+ + ++ DN+P +L F E + + YT
Sbjct: 527 LKFYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSKYT 565
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 7e-04
Identities = 37/265 (13%), Positives = 70/265 (26%), Gaps = 95/265 (35%)
Query: 11 VLTIGWIIFLSSFIP---VHSLLKGHDKLRKKLERCLVELICSFFVASWTGVVKYHGPRP 67
VL + F + ++ +H+L + ELI ++ A + RP
Sbjct: 83 VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITA------RIMAKRP 136
Query: 68 SMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGWVGLLQSTILESVGCIWFNRSEAK 127
+ S L ++ A+
Sbjct: 137 FDKK-------SNS------------------------ALFRAV----------GEGNAQ 155
Query: 128 DREIVARKLRDHV---QGTDNNPLLIFPEGTCVNNHYTVM---FKKGAFELGCTVCPVAI 181
+VA + QG ++ F E + Y V+ K + E + +
Sbjct: 156 ---LVA------IFGGQGNTDDY---FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 182 KYNKIFVDAF----WNSRKQ-------------SFTMH-LLQLMTSWAVVCDVWYLEPQT 223
K+F W S + ++QL + V + P
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL-AHYVVTAKLLGFTPGE 262
Query: 224 LRP---GETAIEFAERVRDIISVRA 245
LR G T + +++ A
Sbjct: 263 LRSYLKGATG-----HSQGLVTAVA 282
Score = 40.0 bits (93), Expect = 8e-04
Identities = 33/167 (19%), Positives = 42/167 (25%), Gaps = 87/167 (52%)
Query: 19 FLSSFIPVHS-LLK-------------------------------GHD--KLRKKLERCL 44
FL P HS LL G D L + +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 45 VELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKHPGW 104
V+ I V W + F A H ++DF PG
Sbjct: 480 VDCIIRLPV-KWETTTQ-------------FKATH--ILDF---------------GPGG 508
Query: 105 ---VGLLQSTILESVGCIWFNRSEAKDREIVARKLRDHVQGT-DNNP 147
+G+L + G R IVA GT D NP
Sbjct: 509 ASGLGVLTHRNKDGTGV----------RVIVA--------GTLDINP 537
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction,
proto-oncogene, complex, ATP-binding, glycoprotein,
kinase, membrane, nucleotide-binding; HET: PTR; 1.35A
{Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB:
1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B*
3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Length = 329
Score = 29.3 bits (65), Expect = 1.5
Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 10/151 (6%)
Query: 14 IGWIIFLSSFIPVHSLLKGHDKLRKKLERCLVELICSFFVA--SWTGVVKYHGPRPS-MR 70
+ W F + VH + G + + K ++L C+ +++ + + P S +R
Sbjct: 178 VPWKSFRQALHEVHPISSGLEAMALKST---IDLTCNDYISVFEFDIFTRLFQPWSSLLR 234
Query: 71 PKQVFVANHTSMIDFIILEQMTAFAVIMQKHPG-WVGLLQSTILES--VGCIWFNRSEAK 127
H + F+ +++ A PG ++ L T L +G +
Sbjct: 235 NWNSLAVTHPGYMAFLTYDEVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYV-TADGNIL 293
Query: 128 DREIVARKLRDHVQGTDNNPLLIFPEGTCVN 158
+ L + +FP+G N
Sbjct: 294 QTIPHNKPLFQALIDGFREGFYLFPDGRNQN 324
>3nnb_A Alginate lyase; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; HET:
MSE CIT; 1.60A {Bacteroides ovatus} PDB: 3nfv_A*
Length = 382
Score = 28.2 bits (62), Expect = 2.9
Identities = 9/63 (14%), Positives = 24/63 (38%)
Query: 42 RCLVELICSFFVASWTGVVKYHGPRPSMRPKQVFVANHTSMIDFIILEQMTAFAVIMQKH 101
+ V+ + +F+ + T + + ++ K + MID +M +M+
Sbjct: 125 QKAVDFLNVWFLDAKTKMNPHLTYGQTIPGKNKGMGRGAGMIDIYSFTEMIDAMTLMENS 184
Query: 102 PGW 104
+
Sbjct: 185 KAF 187
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 27.2 bits (61), Expect = 5.9
Identities = 6/43 (13%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 201 MHLLQLMTSWAVVCDVWYLEPQTLRP--GETAIEFAERVRDII 241
++ + D ++ P P GE + +R + +
Sbjct: 91 KTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAV 133
>2i6h_A AGR_C_189P, hypothetical protein ATU0120; structural genomics,
APC5905, PSI-2; 1.75A {Agrobacterium tumefaciens str}
SCOP: a.118.8.5
Length = 207
Score = 27.0 bits (59), Expect = 6.9
Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 12/131 (9%)
Query: 120 WFNRSEAKDREIVARKLRDHVQGTDN-------NPLLIFPEGTCVNNHYTVMFKKGA--F 170
WF++ A D R H ++ F+ A +
Sbjct: 46 WFDKDAAFDNHFHDRFRDAHFAAARRELDGWLEGAESSLALMLLLDQFPRNCFRGTAHMY 105
Query: 171 ELGCTVCPVAIKYNKIFVDAFWNSRKQSFTMHLLQLMTSWAVVCDVWYLEPQTLRPGETA 230
A + + D + + F A L G
Sbjct: 106 ATDPLARFFADEAIRRGHDQAVSEDLRVFFYLPFSHAEDIAAQQRACDLNQPL---GGLY 162
Query: 231 IEFAERVRDII 241
+ AE RDI+
Sbjct: 163 LHHAEEHRDIV 173
>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin;
1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A
Length = 210
Score = 26.8 bits (59), Expect = 8.2
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 151 FPEGTCVNN----HYTVMFKKGAFELGC--TVCP 178
+ G HYT + + +GC C
Sbjct: 93 YGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCS 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.139 0.440
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,496,061
Number of extensions: 262221
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 14
Length of query: 284
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 191
Effective length of database: 4,105,140
Effective search space: 784081740
Effective search space used: 784081740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.3 bits)