Query 023312
Match_columns 284
No_of_seqs 99 out of 109
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4827 Uncharacterized conser 100.0 8.6E-62 1.9E-66 435.2 6.9 242 24-268 9-277 (279)
2 PRK13664 hypothetical protein; 72.2 4.2 9.2E-05 30.9 2.9 23 229-251 2-26 (62)
3 PF07172 GRP: Glycine rich pro 70.5 3.2 7E-05 33.7 2.1 16 8-23 6-21 (95)
4 PF13980 UPF0370: Uncharacteri 58.7 11 0.00023 28.9 2.8 22 229-250 2-24 (63)
5 PRK10862 SoxR reducing system 55.8 12 0.00026 32.6 3.0 24 224-247 68-92 (154)
6 PF12534 DUF3733: Leucine-rich 39.8 32 0.00069 26.5 2.8 20 227-246 20-39 (65)
7 PF04246 RseC_MucC: Positive r 39.1 35 0.00075 28.3 3.2 23 226-248 64-86 (135)
8 PF11874 DUF3394: Domain of un 38.1 14 0.0003 33.5 0.8 19 231-249 156-174 (183)
9 COG1930 CbiN ABC-type cobalt t 37.3 30 0.00065 28.6 2.5 10 35-44 27-36 (97)
10 PF10831 DUF2556: Protein of u 34.6 24 0.00052 26.0 1.3 12 231-242 2-13 (53)
11 PF11980 DUF3481: Domain of un 33.7 22 0.00047 28.9 1.1 12 231-242 12-23 (87)
12 TIGR02052 MerP mercuric transp 30.4 23 0.00051 25.1 0.8 13 1-13 1-13 (92)
13 COG2372 CopC Uncharacterized p 30.1 1.8E+02 0.0039 25.2 6.1 35 77-116 89-123 (127)
14 PRK10053 hypothetical protein; 29.5 46 0.00099 28.7 2.5 29 72-100 59-92 (130)
15 smart00831 Cation_ATPase_N Cat 27.6 1E+02 0.0022 21.9 3.7 23 224-246 30-53 (64)
16 PF14794 DUF4479: Domain of un 27.1 39 0.00085 26.2 1.5 21 117-137 45-65 (73)
17 PF08381 BRX: Transcription fa 26.4 63 0.0014 24.5 2.4 28 100-127 18-45 (59)
18 PF13721 SecD-TM1: SecD export 25.4 69 0.0015 26.0 2.7 24 235-258 7-30 (101)
19 TIGR03300 assembly_YfgL outer 25.0 50 0.0011 31.0 2.1 10 22-31 14-23 (377)
20 PF15240 Pro-rich: Proline-ric 23.8 50 0.0011 30.1 1.7 20 11-31 2-21 (179)
21 PF00957 Synaptobrevin: Synapt 23.7 85 0.0018 24.1 2.9 20 226-245 58-77 (89)
22 PF13260 DUF4051: Protein of u 23.2 69 0.0015 23.7 2.0 10 230-239 2-11 (54)
23 PRK12933 secD preprotein trans 21.4 83 0.0018 33.5 3.1 31 225-255 4-36 (604)
24 PF08510 PIG-P: PIG-P; InterP 20.8 80 0.0017 26.4 2.3 16 232-247 42-57 (126)
25 PLN00038 photosystem I reactio 20.3 1E+02 0.0022 27.8 2.9 21 11-31 91-111 (165)
26 COG1724 Predicted RNA binding 20.2 86 0.0019 24.3 2.2 18 125-142 9-26 (66)
27 TIGR00807 malonate_madL malona 20.1 59 0.0013 28.0 1.4 10 233-243 65-76 (125)
No 1
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.6e-62 Score=435.17 Aligned_cols=242 Identities=53% Similarity=0.856 Sum_probs=224.4
Q ss_pred ccccccccccccccccccccCCCCCCC------CCCCCCCCCcccccccCCCCCCCCCceeEEEEeecCCCCceec-cce
Q 023312 24 SLAFESDELLVDDEEFGLEGGSKPQIK------PHEPAPTRSTTTTTRRKVSDQDSDSKIQFSLEHAFGDSDFVPA-GTF 96 (284)
Q Consensus 24 ~~~f~~de~~~d~~e~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~e~d~~ls~~LEHsl~d~~Ft~R-G~i 96 (284)
+.+|++||+|+||+||||+|+ .+... +++|....+..+.|++++.-++.|++++|+|||+|||.+|.+. |++
T Consensus 9 ~IAf~~de~ll~ddefgLEga-k~~~TdlY~~~Ssspqqqqq~~~iR~~~~dpTdldkk~QftlEhaFGdkdF~~anGtf 87 (279)
T KOG4827|consen 9 IIAFILDEFLLADDEFGLEGA-KNEFTDLYPLGSSSPQQQQQIEMIRAFDGDPTDLDKKAQFTLEHAFGDKDFEAANGTF 87 (279)
T ss_pred HHHHhccceeecccccccccc-ccccccccccCCCChhhhhhhhhhhhhcCCcccccchhhhhHHhhcccccccccccee
Confidence 379999999999999999999 66554 2223233667778888999999999999999999999999999 999
Q ss_pred eeccccCCCCCccceeeeeecCCCCHHHHHHHHHHhccCCcEEEEecccccCCCCCceEEEEEec---------------
Q 023312 97 SARLKTSSHGGQTLTKLRFSRNAFTGEDKEKFEKLLQDDDFYRIRLPSNTVSPPGRDYIISSVKA--------------- 161 (284)
Q Consensus 97 s~~lksss~G~~~l~sl~~sq~~LT~~e~~kLk~LA~~dglYRIRVps~v~~~~g~~yv~SSVkA--------------- 161 (284)
++|+|+|++|.+++.++|++.+.+..+|++.|+.+...|.||+||+|+++..|.|+++|+++|.|
T Consensus 88 SaR~ks~shgGkn~~klrf~~~dF~aeekdaF~n~lkgddf~kiqL~s~~i~PpgrefviasV~aRc~p~DGky~dE~fi 167 (279)
T KOG4827|consen 88 SARAKSSSHGGKNFLKLRFDPCDFLAEEKDAFHNFLKGDDFEKIQLHSLTIFPPGREFVIASVAARCDPEDGKYHDEAFI 167 (279)
T ss_pred EEEeecccCCCcceeeeccChhhhhhhHHHHHHHHHhcccHhhhccccceecCCcchhhhhhhheecCcccCccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---CCCcEEEEEeecC-CCCCCCccCCCCCCcceeeeEEeeCCCCCCCchhhhhhhcc-ccCCCCCCCCCCchhHHhhhH
Q 023312 162 ---EGVNILAVNYGAF-GACSYPRQLKLPHKWSFNSHTVLKNSEQAPRAPIFAEEVLG-ENGEGEIIPPPERSFWAKYWM 236 (284)
Q Consensus 162 ---~~GnvigVsys~~-g~C~~~~~~~~~~~~~FnTtV~vr~~~~aP~Ta~fiek~E~-E~~~ge~~p~~erSFlaKYWm 236 (284)
++.||++++|.+| |.|+|+++++.+.+|+||++++....+|+|+|+.|.|++|+ |+.+||..++||||||+||||
T Consensus 168 ~h~egANiLa~s~GsPkGaCqyprqlklpakwsfnsHti~eSse~aP~T~~Fteei~g~en~ege~~~~~eRSF~AKYWM 247 (279)
T KOG4827|consen 168 CHDEGANILASSQGSPKGACQYPRQLKLPAKWSFNSHTIGESSEPAPDTAAFTEEIEGEENAEGEGADADERSFLAKYWM 247 (279)
T ss_pred eeccCcceeeeccCCCCccccCchhhcCccccccccceeccccCCCCCcHHHHHHHhccccccccCCCCcchhHHHHHHH
Confidence 4559999999876 89999999999999999999999999999999999999999 566889999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCccccCCCCCCcc
Q 023312 237 YLIPLGLIVINAVTQAMNMPEEGVQGGGQTQQ 268 (284)
Q Consensus 237 YIvP~vl~~mn~~~~a~~~PE~~~~~~g~~~~ 268 (284)
||||++|+|||+|.++.||.|+ +++||+|+
T Consensus 248 YiiPlglVVl~AV~qasnmAee--Pa~G~aG~ 277 (279)
T KOG4827|consen 248 YIIPLGLVVLFAVIQASNMAEE--PAAGAAGA 277 (279)
T ss_pred hhccchhhhhhhhhhccccccC--cccccccc
Confidence 9999999999999999999999 89999885
No 2
>PRK13664 hypothetical protein; Provisional
Probab=72.19 E-value=4.2 Score=30.86 Aligned_cols=23 Identities=30% Similarity=0.730 Sum_probs=14.4
Q ss_pred hhHHhhhHHHHHHHH--HHHHHhhh
Q 023312 229 SFWAKYWMYLIPLGL--IVINAVTQ 251 (284)
Q Consensus 229 SFlaKYWmYIvP~vl--~~mn~~~~ 251 (284)
.|+++||..+|-+++ +++|+|-.
T Consensus 2 ~WLadyWWilill~lvG~i~N~iK~ 26 (62)
T PRK13664 2 DWLAKYWWILVLVFLVGVLLNVIKD 26 (62)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999998443333 45666543
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=70.51 E-value=3.2 Score=33.66 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 023312 8 FALFLFFFSLLLFCHS 23 (284)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (284)
|.||+|+|+++||++|
T Consensus 6 ~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 6 FLLLGLLLAALLLISS 21 (95)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666677777676666
No 4
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=58.70 E-value=11 Score=28.88 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=14.1
Q ss_pred hhHHhhhHHHHHHH-HHHHHHhh
Q 023312 229 SFWAKYWMYLIPLG-LIVINAVT 250 (284)
Q Consensus 229 SFlaKYWmYIvP~v-l~~mn~~~ 250 (284)
.|++.||..|+-++ =+++|+|-
T Consensus 2 ~WladYWWiiLl~lvG~i~n~iK 24 (63)
T PF13980_consen 2 HWLADYWWIILLILVGMIINGIK 24 (63)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999998876443 23555553
No 5
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=55.81 E-value=12 Score=32.56 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=19.3
Q ss_pred CCCCchhH-HhhhHHHHHHHHHHHH
Q 023312 224 PPPERSFW-AKYWMYLIPLGLIVIN 247 (284)
Q Consensus 224 p~~erSFl-aKYWmYIvP~vl~~mn 247 (284)
.-+|++++ +-.|+|++|++.+++-
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~g 92 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLG 92 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHH
Confidence 35788888 7899999999977653
No 6
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=39.80 E-value=32 Score=26.46 Aligned_cols=20 Identities=25% Similarity=0.758 Sum_probs=15.6
Q ss_pred CchhHHhhhHHHHHHHHHHH
Q 023312 227 ERSFWAKYWMYLIPLGLIVI 246 (284)
Q Consensus 227 erSFlaKYWmYIvP~vl~~m 246 (284)
-|-||.||+=||+=+.+++.
T Consensus 20 lkPWwdvf~~YL~~~mlmi~ 39 (65)
T PF12534_consen 20 LKPWWDVFFDYLVLLMLMIF 39 (65)
T ss_pred HccHHHHHHHHHHHHHHHHH
Confidence 46799999999986665544
No 7
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=39.11 E-value=35 Score=28.35 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=17.1
Q ss_pred CCchhHHhhhHHHHHHHHHHHHH
Q 023312 226 PERSFWAKYWMYLIPLGLIVINA 248 (284)
Q Consensus 226 ~erSFlaKYWmYIvP~vl~~mn~ 248 (284)
+..-+.+-.|+|++|+++|++-+
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~ 86 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGA 86 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 34445599999999999776543
No 8
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=38.07 E-value=14 Score=33.50 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=14.0
Q ss_pred HHhhhHHHHHHHHHHHHHh
Q 023312 231 WAKYWMYLIPLGLIVINAV 249 (284)
Q Consensus 231 laKYWmYIvP~vl~~mn~~ 249 (284)
..|+||||-.++|+.+.+.
T Consensus 156 p~ke~~yiPAlLLL~lv~~ 174 (183)
T PF11874_consen 156 PPKEWVYIPALLLLGLVAW 174 (183)
T ss_pred CCcceEeHHHHHHHHHHHH
Confidence 3689999977777776443
No 9
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=37.27 E-value=30 Score=28.56 Aligned_cols=10 Identities=50% Similarity=0.780 Sum_probs=7.8
Q ss_pred cccccccccC
Q 023312 35 DDEEFGLEGG 44 (284)
Q Consensus 35 d~~e~~~~~~ 44 (284)
+|.|||..-+
T Consensus 27 ~~ge~gGaD~ 36 (97)
T COG1930 27 TDGEFGGADG 36 (97)
T ss_pred ccccccCCcc
Confidence 6889987665
No 10
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=34.60 E-value=24 Score=25.97 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=9.2
Q ss_pred HHhhhHHHHHHH
Q 023312 231 WAKYWMYLIPLG 242 (284)
Q Consensus 231 laKYWmYIvP~v 242 (284)
+.|||..||=.+
T Consensus 2 irky~wlvvfav 13 (53)
T PF10831_consen 2 IRKYWWLVVFAV 13 (53)
T ss_pred cceehhHHHHHH
Confidence 679999888444
No 11
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=33.74 E-value=22 Score=28.88 Aligned_cols=12 Identities=42% Similarity=1.251 Sum_probs=9.8
Q ss_pred HHhhhHHHHHHH
Q 023312 231 WAKYWMYLIPLG 242 (284)
Q Consensus 231 laKYWmYIvP~v 242 (284)
+--||+||+...
T Consensus 12 lp~~~yyiiA~g 23 (87)
T PF11980_consen 12 LPPYWYYIIAMG 23 (87)
T ss_pred CCceeeHHHhhc
Confidence 667999999754
No 12
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=30.45 E-value=23 Score=25.13 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=8.3
Q ss_pred CcccchhHHHHHH
Q 023312 1 MKKKLPLFALFLF 13 (284)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (284)
||+++-||+||++
T Consensus 1 ~~~~~~~~~~~~~ 13 (92)
T TIGR02052 1 MKKLATLLALFVL 13 (92)
T ss_pred ChhHHHHHHHHHH
Confidence 7887766665443
No 13
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=30.10 E-value=1.8e+02 Score=25.17 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=27.5
Q ss_pred eeEEEEeecCCCCceeccceeeccccCCCCCccceeeeee
Q 023312 77 IQFSLEHAFGDSDFVPAGTFSARLKTSSHGGQTLTKLRFS 116 (284)
Q Consensus 77 ls~~LEHsl~d~~Ft~RG~is~~lksss~G~~~l~sl~~s 116 (284)
+.++|++.|..|.|+.-=.+. +.||+....+++|+
T Consensus 89 l~v~l~~~L~aG~Y~v~Wrvv-----S~DGH~v~G~~sFs 123 (127)
T COG2372 89 LEVPLPQPLKAGVYTVDWRVV-----SSDGHVVKGSISFS 123 (127)
T ss_pred EEecCcccCCCCcEEEEEEEE-----ecCCcEeccEEEEE
Confidence 899999999977776655554 88888877777764
No 14
>PRK10053 hypothetical protein; Provisional
Probab=29.49 E-value=46 Score=28.67 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=13.8
Q ss_pred CCCCceeEE--EEeecCCCCceec---cceeecc
Q 023312 72 DSDSKIQFS--LEHAFGDSDFVPA---GTFSARL 100 (284)
Q Consensus 72 e~d~~ls~~--LEHsl~d~~Ft~R---G~is~~l 100 (284)
--|.+++++ |-..+++..|..| |.|.+.|
T Consensus 59 ~Dd~~V~L~G~Iv~~lg~d~Y~F~D~tG~I~VeI 92 (130)
T PRK10053 59 HDGATVSLRGNLIDHKGDDRYVFRDKSGEINVII 92 (130)
T ss_pred cCCCeEEEEEEEEEEeCCceEEEECCCCcEEEEe
Confidence 444555443 5555665444443 3454333
No 15
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=27.58 E-value=1e+02 Score=21.86 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=15.7
Q ss_pred CCCCchhHHhhhHHHH-HHHHHHH
Q 023312 224 PPPERSFWAKYWMYLI-PLGLIVI 246 (284)
Q Consensus 224 p~~erSFlaKYWmYIv-P~vl~~m 246 (284)
+++.+|||.++|..+. |++++++
T Consensus 30 ~~~~~s~~~~~l~~~~~p~~~iL~ 53 (64)
T smart00831 30 PPKKRSPLLRFLRQFHNPLIYILL 53 (64)
T ss_pred CCCCCCHHHHHHHHHHhHHHHHHH
Confidence 3456899999998764 5554443
No 16
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=27.15 E-value=39 Score=26.18 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=14.7
Q ss_pred cCCCCHHHHHHHHHHhccCCc
Q 023312 117 RNAFTGEDKEKFEKLLQDDDF 137 (284)
Q Consensus 117 q~~LT~~e~~kLk~LA~~dgl 137 (284)
|..||++++++|.++.+.+||
T Consensus 45 ~V~Lt~eqv~~LN~~l~~~Gf 65 (73)
T PF14794_consen 45 QVFLTEEQVAKLNQALQKAGF 65 (73)
T ss_dssp -----HHHHHHHHHHHHHTT-
T ss_pred CEEcCHHHHHHHHHHHHHcCC
Confidence 568999999999999999998
No 17
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=26.44 E-value=63 Score=24.50 Aligned_cols=28 Identities=36% Similarity=0.645 Sum_probs=24.0
Q ss_pred cccCCCCCccceeeeeecCCCCHHHHHH
Q 023312 100 LKTSSHGGQTLTKLRFSRNAFTGEDKEK 127 (284)
Q Consensus 100 lksss~G~~~l~sl~~sq~~LT~~e~~k 127 (284)
+.+.++|.-.|+.+++|+.-+++.++++
T Consensus 18 l~~~p~G~~~LkRVRFSR~~F~e~qA~~ 45 (59)
T PF08381_consen 18 LVSLPDGGNDLKRVRFSRERFSEWQAER 45 (59)
T ss_pred EEECCCCCeeEEEEEEhhhhcCHHHHHH
Confidence 6678888888999999999999887764
No 18
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=25.36 E-value=69 Score=25.98 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcc
Q 023312 235 WMYLIPLGLIVINAVTQAMNMPEE 258 (284)
Q Consensus 235 WmYIvP~vl~~mn~~~~a~~~PE~ 258 (284)
|-|++-++.++++++.+.+|+--|
T Consensus 7 WKyllil~vl~~~~lyALPnlyge 30 (101)
T PF13721_consen 7 WKYLLILVVLLLGALYALPNLYGE 30 (101)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCC
Confidence 555544444555556666676444
No 19
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=24.97 E-value=50 Score=30.97 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=7.2
Q ss_pred hccccccccc
Q 023312 22 HSSLAFESDE 31 (284)
Q Consensus 22 ~~~~~f~~de 31 (284)
+.+++||+|+
T Consensus 14 ~~~~~~~~~~ 23 (377)
T TIGR03300 14 SGCSWFSSKD 23 (377)
T ss_pred hcccCCCCCC
Confidence 3337999986
No 20
>PF15240 Pro-rich: Proline-rich
Probab=23.76 E-value=50 Score=30.06 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhccccccccc
Q 023312 11 FLFFFSLLLFCHSSLAFESDE 31 (284)
Q Consensus 11 ~~~~~~~~~~~~~~~~f~~de 31 (284)
||+||+..||+.| +|=..||
T Consensus 2 LlVLLSvALLALS-SAQ~~dE 21 (179)
T PF15240_consen 2 LLVLLSVALLALS-SAQSTDE 21 (179)
T ss_pred hhHHHHHHHHHhh-hcccccc
Confidence 3344444444445 4555555
No 21
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=23.71 E-value=85 Score=24.12 Aligned_cols=20 Identities=20% Similarity=0.758 Sum_probs=14.0
Q ss_pred CCchhHHhhhHHHHHHHHHH
Q 023312 226 PERSFWAKYWMYLIPLGLIV 245 (284)
Q Consensus 226 ~erSFlaKYWmYIvP~vl~~ 245 (284)
..+-||.+|.+|++-+++++
T Consensus 58 ~r~~~~~~~k~~~i~~~iv~ 77 (89)
T PF00957_consen 58 KRKMWWRNYKLYIIIIIIVI 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhhhh
Confidence 45778999988877555443
No 22
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=23.17 E-value=69 Score=23.71 Aligned_cols=10 Identities=60% Similarity=1.182 Sum_probs=6.8
Q ss_pred hHHhhhHHHH
Q 023312 230 FWAKYWMYLI 239 (284)
Q Consensus 230 FlaKYWmYIv 239 (284)
|++=||.-+|
T Consensus 2 fiawywivli 11 (54)
T PF13260_consen 2 FIAWYWIVLI 11 (54)
T ss_pred hHHHHHHHHH
Confidence 7887776544
No 23
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=21.41 E-value=83 Score=33.47 Aligned_cols=31 Identities=16% Similarity=0.431 Sum_probs=25.5
Q ss_pred CCCchhHHhh--hHHHHHHHHHHHHHhhhcCCC
Q 023312 225 PPERSFWAKY--WMYLIPLGLIVINAVTQAMNM 255 (284)
Q Consensus 225 ~~erSFlaKY--WmYIvP~vl~~mn~~~~a~~~ 255 (284)
..+|..+-|| |-|++-++.+++.++.+++|.
T Consensus 4 ~~~~~m~n~yp~wky~~i~~~l~~~~lyalPn~ 36 (604)
T PRK12933 4 QKNKKLLNHYSAWKYVVLIVTIIILLLSAIPTW 36 (604)
T ss_pred CccchhhccChhHHHHHHHHHHHHHHHHhChhc
Confidence 3556678888 999998888888888888886
No 24
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=20.81 E-value=80 Score=26.39 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=12.9
Q ss_pred HhhhHHHHHHHHHHHH
Q 023312 232 AKYWMYLIPLGLIVIN 247 (284)
Q Consensus 232 aKYWmYIvP~vl~~mn 247 (284)
+|||--.+|+.+++.+
T Consensus 42 ~kyWAlaiP~~~l~~~ 57 (126)
T PF08510_consen 42 DKYWALAIPSWLLMAM 57 (126)
T ss_pred cchHHHHHHHHHHHHH
Confidence 6999999998876543
No 25
>PLN00038 photosystem I reaction center subunit XI (PsaL); Provisional
Probab=20.28 E-value=1e+02 Score=27.76 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhccccccccc
Q 023312 11 FLFFFSLLLFCHSSLAFESDE 31 (284)
Q Consensus 11 ~~~~~~~~~~~~~~~~f~~de 31 (284)
++++|++||..-...+||.+|
T Consensus 91 lv~IlT~~Ls~Yg~~~f~~~~ 111 (165)
T PLN00038 91 LVLILTLCLTIYGAASFQEGE 111 (165)
T ss_pred HHHHHHHHHHHhcccccCCCC
Confidence 345666666444446888754
No 26
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=20.19 E-value=86 Score=24.34 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=13.8
Q ss_pred HHHHHHHhccCCcEEEEe
Q 023312 125 KEKFEKLLQDDDFYRIRL 142 (284)
Q Consensus 125 ~~kLk~LA~~dglYRIRV 142 (284)
...+.++++.||||.+|.
T Consensus 9 ~ke~ik~Le~~Gf~~vrq 26 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQ 26 (66)
T ss_pred HHHHHHHHHhCCcEEEEe
Confidence 344556777999999995
No 27
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=20.10 E-value=59 Score=28.03 Aligned_cols=10 Identities=40% Similarity=1.398 Sum_probs=6.6
Q ss_pred hhh--HHHHHHHH
Q 023312 233 KYW--MYLIPLGL 243 (284)
Q Consensus 233 KYW--mYIvP~vl 243 (284)
.|| ||| |+|+
T Consensus 65 ~FW~aMYI-PIVV 76 (125)
T TIGR00807 65 GFWSAMYI-PIVV 76 (125)
T ss_pred HHHHccHh-HHHH
Confidence 455 898 8754
Done!