Query 023312
Match_columns 284
No_of_seqs 99 out of 109
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 04:42:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h6r_A Clitocypin analog; cyst 19.0 47 0.0016 28.3 1.8 9 134-142 5-13 (152)
2 2ba3_A NIKA; dimer, bacterial 18.6 33 0.0011 22.8 0.7 20 118-137 20-39 (51)
3 3k6o_A Uncharacterized protein 15.9 1.9E+02 0.0064 25.5 5.0 49 72-121 145-195 (224)
4 3qwn_A Hypothetical NIGD-like 14.1 1.4E+02 0.0048 26.2 3.7 32 73-104 139-172 (214)
5 1ldd_A APC2WHB, anaphase promo 13.6 81 0.0028 23.6 1.7 10 231-240 6-15 (74)
6 3h9w_A Diguanylate cyclase wit 13.6 3.2E+02 0.011 18.5 6.3 48 120-169 44-99 (115)
7 2kog_A Vesicle-associated memb 12.6 87 0.003 25.1 1.8 17 226-242 88-104 (119)
8 3jtz_A Integrase; four strande 12.5 91 0.0031 23.4 1.7 11 119-129 2-12 (88)
9 2k49_A UPF0339 protein SO_3888 12.3 2.7E+02 0.0092 22.3 4.6 41 123-170 41-81 (118)
10 2rpq_B Activating transcriptio 12.2 46 0.0016 23.3 -0.0 10 31-40 36-45 (49)
No 1
>3h6r_A Clitocypin analog; cysteine proteinase inhibitor, kunitz inhibitor, beta trefoil; 1.95A {Clitocybe nebularis} PDB: 3h6r_B 3h6s_E
Probab=19.03 E-value=47 Score=28.29 Aligned_cols=9 Identities=44% Similarity=0.892 Sum_probs=8.3
Q ss_pred cCCcEEEEe
Q 023312 134 DDDFYRIRL 142 (284)
Q Consensus 134 ~dglYRIRV 142 (284)
.||+||||+
T Consensus 5 ~dG~YtLra 13 (152)
T 3h6r_A 5 EDGTYRLRA 13 (152)
T ss_dssp CSEEEEEEE
T ss_pred cCceEEEEe
Confidence 699999998
No 2
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=18.63 E-value=33 Score=22.80 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHhccCCc
Q 023312 118 NAFTGEDKEKFEKLLQDDDF 137 (284)
Q Consensus 118 ~~LT~~e~~kLk~LA~~dgl 137 (284)
--||++|.+.|++.|+..|+
T Consensus 20 vRlt~eE~~~l~~~A~~~g~ 39 (51)
T 2ba3_A 20 LRFSPVEDETIRKKAEDSGL 39 (51)
T ss_dssp EEECHHHHHHHHHHHHHHTC
T ss_pred EEECHHHHHHHHHHHHHhCC
Confidence 36899999999999998774
No 3
>3k6o_A Uncharacterized protein DUF1344; protein of unknown function DUF1344, structural genomics, JO center for structural genomics; HET: PG4; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=15.94 E-value=1.9e+02 Score=25.46 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=34.0
Q ss_pred CCCCceeEEEEeecCC-C-CceeccceeeccccCCCCCccceeeeeecCCCC
Q 023312 72 DSDSKIQFSLEHAFGD-S-DFVPAGTFSARLKTSSHGGQTLTKLRFSRNAFT 121 (284)
Q Consensus 72 e~d~~ls~~LEHsl~d-~-~Ft~RG~is~~lksss~G~~~l~sl~~sq~~LT 121 (284)
++++.+.++|.|.=.+ . .|.. |-|+++|....+-...-.+|+|.-++.+
T Consensus 145 ~~~~~i~LeLrHna~gD~~~y~~-gyvSfpL~~l~~~~~~~~~i~l~~nty~ 195 (224)
T 3k6o_A 145 TKDGYAHLELRYNNNGSQGRLVP-GMVSFKLDDYSPENSELKGIKVLVNPVD 195 (224)
T ss_dssp CSSSEEEEEEEEECTTCCCCEEE-EEEEEECGGGSTTCTTCSEEEEEECBSS
T ss_pred CCCCEEEEEEEeCCCCCccccEe-EEEEEEhHHCccccCCCcEEEEEEEecC
Confidence 4668899999999874 4 6777 9999999877642222334555555444
No 4
>3qwn_A Hypothetical NIGD-like protein; SH3-like barrel fold, structural genomics, joint center for structural genomics, JCSG; 2.42A {Bacteroides caccae}
Probab=14.06 E-value=1.4e+02 Score=26.22 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=26.8
Q ss_pred CCCceeEEEEeecC-CC-CceeccceeeccccCC
Q 023312 73 SDSKIQFSLEHAFG-DS-DFVPAGTFSARLKTSS 104 (284)
Q Consensus 73 ~d~~ls~~LEHsl~-d~-~Ft~RG~is~~lksss 104 (284)
.++.+.++|.|.=. |. .|+.||-|+++|....
T Consensus 139 ~~~~~~LeLrHna~gD~~~y~~~gyvSfpL~~l~ 172 (214)
T 3qwn_A 139 TNGTVNMLLYHDANGDEEYYNRRAYLSVPLDKYA 172 (214)
T ss_dssp HHCEEEEEEEEECTTCCSCEEEEEEEEEECGGGC
T ss_pred CCcEEEEEEEECCCCCCccceecEEEEEEhHHCc
Confidence 56789999999987 44 8999999998888664
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=13.64 E-value=81 Score=23.57 Aligned_cols=10 Identities=0% Similarity=0.016 Sum_probs=8.7
Q ss_pred HHhhhHHHHH
Q 023312 231 WAKYWMYLIP 240 (284)
Q Consensus 231 laKYWmYIvP 240 (284)
++-||.||+-
T Consensus 6 ~~v~w~yI~G 15 (74)
T 1ldd_A 6 LQRSLPFIEG 15 (74)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7889999974
No 6
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=13.62 E-value=3.2e+02 Score=18.52 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=26.2
Q ss_pred CCHHHHHHH----HHHhccCCcEEEEecccccCCCCC-ceEEEEEec---CCCcEEEE
Q 023312 120 FTGEDKEKF----EKLLQDDDFYRIRLPSNTVSPPGR-DYIISSVKA---EGVNILAV 169 (284)
Q Consensus 120 LT~~e~~kL----k~LA~~dglYRIRVps~v~~~~g~-~yv~SSVkA---~~GnvigV 169 (284)
+-++|+..+ +++.+.+..|.+.. .+...+|+ .|+...... ..|.++++
T Consensus 44 ihpdd~~~~~~~~~~~~~~~~~~~~e~--r~~~~dG~~~w~~~~~~~~~d~~G~~~~~ 99 (115)
T 3h9w_A 44 MHPEDQEWVVNFCVKQSECGVDHEADY--RALHRDGHYVWIRDVVHVVRDDSGEVEAL 99 (115)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCCEEEEE--EEECTTSCEEEEEEEEEEEECTTSCEEEE
T ss_pred cCHHHHHHHHHHHHHHHhcCCcccEEE--EEEcCCCCEEEEEEEEEEEECCCCCEEEE
Confidence 345666554 44455555554433 22245666 677766655 67766544
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=12.65 E-value=87 Score=25.08 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=11.8
Q ss_pred CCchhHHhhhHHHHHHH
Q 023312 226 PERSFWAKYWMYLIPLG 242 (284)
Q Consensus 226 ~erSFlaKYWmYIvP~v 242 (284)
..+-||++|-||++-++
T Consensus 88 ~rkmwwkn~K~~iii~~ 104 (119)
T 2kog_A 88 KRKYWWKNLKMMIILGV 104 (119)
T ss_dssp HHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34678999988877433
No 8
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=12.50 E-value=91 Score=23.42 Aligned_cols=11 Identities=9% Similarity=0.238 Sum_probs=6.9
Q ss_pred CCCHHHHHHHH
Q 023312 119 AFTGEDKEKFE 129 (284)
Q Consensus 119 ~LT~~e~~kLk 129 (284)
+||+.++.+++
T Consensus 2 ~LT~~~i~~~k 12 (88)
T 3jtz_A 2 SLTDAKIRTLK 12 (88)
T ss_dssp CCCHHHHHHCC
T ss_pred CCCHHHHhcCC
Confidence 46766666664
No 9
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=12.31 E-value=2.7e+02 Score=22.29 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=33.2
Q ss_pred HHHHHHHHHhccCCcEEEEecccccCCCCCceEEEEEecCCCcEEEEE
Q 023312 123 EDKEKFEKLLQDDDFYRIRLPSNTVSPPGRDYIISSVKAEGVNILAVN 170 (284)
Q Consensus 123 ~e~~kLk~LA~~dglYRIRVps~v~~~~g~~yv~SSVkA~~GnvigVs 170 (284)
.-++.+++-|..+..|-++. +.+|+-|| -+||.+|.|||.+
T Consensus 41 ~gI~sVk~na~~~~~fe~~~-----~~~gk~yF--~Lka~NgqvIg~S 81 (118)
T 2k49_A 41 NGIESVQTNSPIEARYAKEV-----AKNDKPYF--NLKAANHQIIGTS 81 (118)
T ss_dssp HHHHHHHHHTTCGGGEEEEE-----ETTTEEEE--EEECTTCCEEEEB
T ss_pred HHHHHHHHhCcccceEEEEE-----ccCCCEEE--EEEcCCCcEEEEc
Confidence 45677888899999999996 33566666 6899999999988
No 10
>2rpq_B Activating transcription factor 7-interacting protein 1; SUMO, SIM, nucleus, UBL conjugation, UBL conjugation pathway, activator; NMR {Homo sapiens}
Probab=12.24 E-value=46 Score=23.31 Aligned_cols=10 Identities=60% Similarity=0.913 Sum_probs=8.0
Q ss_pred cccccccccc
Q 023312 31 ELLVDDEEFG 40 (284)
Q Consensus 31 e~~~d~~e~~ 40 (284)
.|-+||||+|
T Consensus 36 DLTlDdEe~g 45 (49)
T 2rpq_B 36 DLTMDDEESG 45 (49)
T ss_pred Eeeecchhcc
Confidence 3567999998
Done!