Query 023312
Match_columns 284
No_of_seqs 99 out of 109
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 04:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023312.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023312hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ldda_ a.4.5.34 (A:) Anaphase 36.8 7 0.00051 27.8 1.7 11 231-241 6-16 (74)
2 d2cpga_ a.43.1.3 (A:) Transcri 29.3 4.9 0.00035 25.8 -0.2 20 119-138 8-27 (43)
3 d1n9la_ d.110.3.6 (A:) Putativ 23.3 99 0.0072 20.5 6.5 49 119-169 48-100 (109)
4 d2pf1a2 g.32.1.1 (A:36-65) Pro 20.4 14 0.00098 22.0 0.6 6 229-234 5-10 (30)
5 d1cf1a1 b.1.18.11 (A:10-182) A 18.6 68 0.0049 25.8 4.8 51 117-173 88-140 (173)
6 d1jnua_ d.110.3.6 (A:) Photore 18.1 98 0.0072 20.1 5.0 49 119-169 45-97 (104)
7 d1r7ma2 d.95.2.1 (A:121-225) D 16.7 1E+02 0.0074 21.9 5.1 23 112-134 39-61 (105)
8 d1x2ga1 d.224.1.3 (A:247-337) 16.1 90 0.0065 21.7 4.5 49 77-134 5-53 (91)
9 d1g4ma1 b.1.18.11 (A:5-175) Ar 14.7 96 0.007 24.8 4.8 56 117-178 90-147 (171)
10 d1ae9a_ d.163.1.1 (A:) Integra 14.4 49 0.0035 23.1 2.7 20 117-136 1-20 (179)
No 1
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.83 E-value=7 Score=27.81 Aligned_cols=11 Identities=0% Similarity=0.099 Sum_probs=9.3
Q ss_pred HHhhhHHHHHH
Q 023312 231 WAKYWMYLIPL 241 (284)
Q Consensus 231 laKYWmYIvP~ 241 (284)
+|+||-||+-.
T Consensus 6 lq~~w~yI~gM 16 (74)
T d1ldda_ 6 LQRSLPFIEGM 16 (74)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 79999999853
No 2
>d2cpga_ a.43.1.3 (A:) Transcriptional repressor CopG {Streptococcus agalactiae [TaxId: 1311]}
Probab=29.27 E-value=4.9 Score=25.77 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.8
Q ss_pred CCCHHHHHHHHHHhccCCcE
Q 023312 119 AFTGEDKEKFEKLLQDDDFY 138 (284)
Q Consensus 119 ~LT~~e~~kLk~LA~~dglY 138 (284)
.||+++.+.|+++|++-||-
T Consensus 8 slse~~~~~lek~a~e~g~s 27 (43)
T d2cpga_ 8 TLSESVLENLEKMAREMGLS 27 (43)
T ss_dssp EEEHHHHHHHHHHHHHHTCC
T ss_pred EecHHHHHHHHHHHHHcCcc
Confidence 68899999999999998873
No 3
>d1n9la_ d.110.3.6 (A:) Putative blue light receptor, phot-lov1 domain {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=23.25 E-value=99 Score=20.52 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHhccCCcEEEEecccccCCCCC-ceEEEEEec---CCCcEEEE
Q 023312 119 AFTGEDKEKFEKLLQDDDFYRIRLPSNTVSPPGR-DYIISSVKA---EGVNILAV 169 (284)
Q Consensus 119 ~LT~~e~~kLk~LA~~dglYRIRVps~v~~~~g~-~yv~SSVkA---~~GnvigV 169 (284)
....+..+.+.+..+.++.++..+. ....||+ -|+..++.. +.|++.++
T Consensus 48 ~~~~~~~~~~~~~l~~~~~~~~e~~--~~~kdG~~~w~~~~~~pi~d~~G~v~~~ 100 (109)
T d1n9la_ 48 GTDPKEVQKIRDAIKKGEACSVRLL--NYRKDGTPFWNLLTVTPIKTPDGRVSKF 100 (109)
T ss_dssp TCCHHHHHHHHHHHHHTCCEEEEEE--EECTTSCEEEEEEEEEEEECTTSCEEEE
T ss_pred cCCHHHhhhhhhHhhcCCceeeeEE--EEecCCeEEEEEEEEEEEECCCCCEEEE
Confidence 3456778888888888888887763 2355677 456666665 78877664
No 4
>d2pf1a2 g.32.1.1 (A:36-65) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.43 E-value=14 Score=21.98 Aligned_cols=6 Identities=83% Similarity=1.979 Sum_probs=5.1
Q ss_pred hhHHhh
Q 023312 229 SFWAKY 234 (284)
Q Consensus 229 SFlaKY 234 (284)
-||+||
T Consensus 5 ~fwaky 10 (30)
T d2pf1a2 5 AFWAKY 10 (30)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 599998
No 5
>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual arrestin [TaxId: 9913]}
Probab=18.59 E-value=68 Score=25.80 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=39.5
Q ss_pred cCCCCHHHHHHHHHHhccCCcEEEEecccccCCCCCceEEEEEec--CCCcEEEEEeec
Q 023312 117 RNAFTGEDKEKFEKLLQDDDFYRIRLPSNTVSPPGRDYIISSVKA--EGVNILAVNYGA 173 (284)
Q Consensus 117 q~~LT~~e~~kLk~LA~~dglYRIRVps~v~~~~g~~yv~SSVkA--~~GnvigVsys~ 173 (284)
..+||.-+...|++|-.+---+...+|.+.-.+ ++-.+| +.|+..||+|-.
T Consensus 88 ~~~lT~lQe~LlkKLG~nA~PF~f~~p~~~P~S------VtLQP~p~d~GkpcGVdyev 140 (173)
T d1cf1a1 88 SGATTRLQESLIKKLGANTYPFLLTFPDYLPCS------VMLQPAPQDVGKSCGVDFEI 140 (173)
T ss_dssp SCSCCHHHHHHHHHHCSSEEEEEECCCSSCCCC------EEECCCTTCCSCCEEEEEEE
T ss_pred cccccHHHHHHHHHhCCCCcceEEeCCCCCCce------EEeccCCccCCCcceeeEEE
Confidence 457899999999999977777888887763221 555566 899999999953
No 6
>d1jnua_ d.110.3.6 (A:) Photoreceptor phy3 flavin-binding domain, lov2 {Maidenhair fern (Adiantum capillus-veneris) [TaxId: 13818]}
Probab=18.06 E-value=98 Score=20.07 Aligned_cols=49 Identities=6% Similarity=0.093 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHhccCCcEEEEecccccCCCCC-ceEEEEEec---CCCcEEEE
Q 023312 119 AFTGEDKEKFEKLLQDDDFYRIRLPSNTVSPPGR-DYIISSVKA---EGVNILAV 169 (284)
Q Consensus 119 ~LT~~e~~kLk~LA~~dglYRIRVps~v~~~~g~-~yv~SSVkA---~~GnvigV 169 (284)
.-.+...+.+....+....++.-+ .....+|+ -|+..++.+ +.|+|.++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~e~--~~~~~dg~~~~~~~~~~pi~d~~G~v~~~ 97 (104)
T d1jnua_ 45 GTDRKAVQLIRDAVKEQRDVTVQV--LNYTKGGRAFWNLFHLQVMRDENGDVQYF 97 (104)
T ss_dssp TSCHHHHHHHHHHHHHTCCEEEEE--EEECTTSCEEEEEEEEEEECTTTSSCCEE
T ss_pred ccchHHHhhhhhhhhcCceeEeEE--EEEecccceEEEEEEEEEEECCCCCEEEE
Confidence 346777888888888888887776 33456666 555656655 77876654
No 7
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.70 E-value=1e+02 Score=21.88 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.0
Q ss_pred eeeeecCCCCHHHHHHHHHHhcc
Q 023312 112 KLRFSRNAFTGEDKEKFEKLLQD 134 (284)
Q Consensus 112 sl~~sq~~LT~~e~~kLk~LA~~ 134 (284)
.+.+.-+.+|.+|.+.|.+.+..
T Consensus 39 ~i~l~T~~Ft~~e~~~L~~~L~~ 61 (105)
T d1r7ma2 39 SIVLNTQSFTFEEVEYLVKGLRN 61 (105)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCHHHHHHHHHHHHH
Confidence 47788899999999999998774
No 8
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.15 E-value=90 Score=21.75 Aligned_cols=49 Identities=14% Similarity=0.195 Sum_probs=37.1
Q ss_pred eeEEEEeecCCCCceeccceeeccccCCCCCccceeeeeecCCCCHHHHHHHHHHhcc
Q 023312 77 IQFSLEHAFGDSDFVPAGTFSARLKTSSHGGQTLTKLRFSRNAFTGEDKEKFEKLLQD 134 (284)
Q Consensus 77 ls~~LEHsl~d~~Ft~RG~is~~lksss~G~~~l~sl~~sq~~LT~~e~~kLk~LA~~ 134 (284)
.++.++|.|.- |.|.+++.--+ .+++.+.+-.+-|...+.+.|++.+..
T Consensus 5 f~~~~~~rF~~------G~ve~~l~V~~---G~I~~~~i~gDfl~~~~i~~le~~L~G 53 (91)
T d1x2ga1 5 FSHLLDERFTW------GGVELHFDVEK---GHITRAQVFTDSLNPAPLEALAGRLQG 53 (91)
T ss_dssp CSEEEEEEETT------EEEEEEEEEET---TEEEEEEEEECCSCCHHHHHHHHHHTT
T ss_pred CceeheeecCC------ceEEEEEEEeC---CEEEEEEEEcCCCCcHHHHHHHHHHcC
Confidence 57888888874 66665555444 247788899999999999999997753
No 9
>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus), beta-arrestin 1 [TaxId: 9913]}
Probab=14.66 E-value=96 Score=24.80 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=42.9
Q ss_pred cCCCCHHHHHHHHHHhccCCcEEEEecccccCCCCCceEEEEEec--CCCcEEEEEeecCCCCC
Q 023312 117 RNAFTGEDKEKFEKLLQDDDFYRIRLPSNTVSPPGRDYIISSVKA--EGVNILAVNYGAFGACS 178 (284)
Q Consensus 117 q~~LT~~e~~kLk~LA~~dglYRIRVps~v~~~~g~~yv~SSVkA--~~GnvigVsys~~g~C~ 178 (284)
..+||.-+-..+++|-.+---+...+|.+.-.+ ++-.+| +.|...||+|....=|.
T Consensus 90 ~~~lT~lQerLlkKLG~nA~PF~f~~p~~~P~S------VtLQP~~~d~gkpcGVdyevk~f~a 147 (171)
T d1g4ma1 90 KKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCS------VTLQPGPEDTGKACGVDYEVKAFCA 147 (171)
T ss_dssp CCCCCHHHHHHHHHSCTTEEEEEECCCTTSCCC------EEEECCGGGGGGCEEEEEEEEEEEE
T ss_pred CCCCcHHHHHHHHhhccCceeeeecCCCCCCCe------EEeccCCccCCCcceeEEEEEEEEc
Confidence 457999999999999988888899988764222 566777 99999999996433343
No 10
>d1ae9a_ d.163.1.1 (A:) Integrase (Int) {Bacteriophage lambda [TaxId: 10710]}
Probab=14.42 E-value=49 Score=23.12 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=17.1
Q ss_pred cCCCCHHHHHHHHHHhccCC
Q 023312 117 RNAFTGEDKEKFEKLLQDDD 136 (284)
Q Consensus 117 q~~LT~~e~~kLk~LA~~dg 136 (284)
+.+||.+|.++|.+.+..+.
T Consensus 1 R~~lt~ee~~~l~~~~~~~~ 20 (179)
T d1ae9a_ 1 RSRLTADEYLKIYQAAESSP 20 (179)
T ss_dssp CCCCCHHHHHHHHHHGGGSC
T ss_pred CCCCCHHHHHHHHHHHhhCC
Confidence 45799999999999988765
Done!