BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023313
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EHX|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus At 1.9
Angstrom Resolution
pdb|4EHY|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus In Complex
With AdpMG2+ AT 2.2 ANGSTROM RESOLUTION
Length = 315
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 61 AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
ILDDG QH L RDL I+++ +LLP G LREPL ++RAD V+ +
Sbjct: 134 VFILDDGFQHRKLHRDLNILLLKKKD--LKDRLLPAGNLREPLKEIRRADALVLTY---- 187
Query: 121 SEQNLKDIELEMRDIKKSLSIFFT-----RMVPSYLFEVGNINSKIPLTAVCNANVLCVS 175
Q ++ E FFT +M + + + ++P + V+ S
Sbjct: 188 --QEVEPFE------------FFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFS 233
Query: 176 AIGSANAFVQSLQKLGPCSVNRLDFNDHHSF 206
+G F + L+ LG + F DH+ +
Sbjct: 234 GLGDNGQFRKVLKNLGIKVKEFMSFPDHYDY 264
>pdb|4EHW|A Chain A, Crystal Structure Of Lpxk From Aquifex Aeolicus At 2.3
Angstrom Resolution
Length = 317
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 61 AVILDDGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLI 120
ILDDG QH L RDL I+++ +LLP G LREPL ++RAD V+ +
Sbjct: 136 VFILDDGFQHRKLHRDLNILLLKKKDL--KDRLLPAGNLREPLKEIRRADALVLTY---- 189
Query: 121 SEQNLKDIELEMRDIKKSLSIFFT-----RMVPSYLFEVGNINSKIPLTAVCNANVLCVS 175
Q ++ E FFT +M + + + ++P + V+ S
Sbjct: 190 --QEVEPFE------------FFTGKPTFKMFREFCCLLNSDFEEVPFDILKEREVIAFS 235
Query: 176 AIGSANAFVQSLQKLGPCSVNRLDFNDHHSF 206
+G F + L+ LG + F DH+ +
Sbjct: 236 GLGDNGQFRKVLKNLGIKVKEFMSFPDHYDY 266
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 9 RPA-KIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDG 67
RPA IG+ N+ T + D QKN G +G G +++ G
Sbjct: 133 RPAGHIGIEPNKGDTNVPTWPQ----DDEYAGIPQKNYTKDVTGGWYDAGDHGKYVVNGG 188
Query: 68 MQHWSLRRDLEIVMVNGLMPWG 89
+ W+L E + GL WG
Sbjct: 189 IAVWTLMNMYERAKIRGLDNWG 210
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 9 RPA-KIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDG 67
RPA IG+ N+ T + D QKN G +G G +++ G
Sbjct: 133 RPAGHIGIEPNKGDTNVPTWPQ----DDEYAGIPQKNYTKDVTGGWYDAGDHGKYVVNGG 188
Query: 68 MQHWSLRRDLEIVMVNGLMPWG 89
+ W+L E + GL WG
Sbjct: 189 IAVWTLMNMYERAKIRGLDNWG 210
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 92 KLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYL 151
++LP+G L+E + RA + + + + N KDIE DI +S+ T ++ S+L
Sbjct: 471 RVLPIGGLKEKALGAHRAGLTTI----IAPKDNEKDIE----DIPESVREGLTFILASHL 522
Query: 152 FEV 154
EV
Sbjct: 523 DEV 525
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 115 HHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGN 156
H A IS+QN+KD+++ +K+++ VP F+V N
Sbjct: 284 HLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLN 325
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 115 HHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGN 156
H A IS+QN+KD+++ +K+++ VP F+V N
Sbjct: 283 HLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLN 324
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 115 HHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGN 156
H A IS+QN+KD+++ +K+++ VP F+V N
Sbjct: 284 HLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLN 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,949,676
Number of Sequences: 62578
Number of extensions: 300221
Number of successful extensions: 588
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 8
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)