Query 023313
Match_columns 284
No_of_seqs 192 out of 1000
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:43:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ehx_A Tetraacyldisaccharide 4 100.0 7.4E-56 2.5E-60 414.3 15.2 211 1-280 103-313 (315)
2 2wsm_A Hydrogenase expression/ 68.8 4.5 0.00015 33.4 4.1 71 56-134 106-183 (221)
3 4h0c_A Phospholipase/carboxyle 51.2 24 0.00083 29.2 5.6 50 166-216 149-206 (210)
4 2kx7_A Sensor-like histidine k 41.4 28 0.00096 27.3 4.0 58 2-90 1-60 (117)
5 3lcm_A SMU.1420, putative oxid 39.2 51 0.0018 27.1 5.8 58 165-222 116-185 (196)
6 4fhz_A Phospholipase/carboxyle 37.7 72 0.0025 27.9 6.8 53 167-220 204-264 (285)
7 2hf9_A Probable hydrogenase ni 35.8 71 0.0024 25.9 6.1 17 105-121 162-178 (226)
8 1wv9_A Rhodanese homolog TT165 33.9 54 0.0019 23.2 4.5 14 59-72 78-91 (94)
9 4f21_A Carboxylesterase/phosph 33.5 87 0.003 26.5 6.5 51 167-218 182-240 (246)
10 1fgl_B HIV-1 GAG protein; cycl 32.1 15 0.00053 21.2 0.9 12 93-104 10-21 (26)
11 3r6w_A FMN-dependent NADH-azor 30.9 1.1E+02 0.0039 25.0 6.7 54 166-220 135-203 (212)
12 3og9_A Protein YAHD A copper i 27.9 1.8E+02 0.0063 22.7 7.3 52 167-219 148-206 (209)
13 3o4f_A Spermidine synthase; am 27.4 58 0.002 29.3 4.4 69 61-134 141-217 (294)
14 3pdi_A Nitrogenase MOFE cofact 24.1 1.2E+02 0.0042 28.8 6.2 32 165-196 329-360 (483)
15 3ha2_A NADPH-quinone reductase 22.8 1.2E+02 0.004 24.8 5.1 55 166-220 90-162 (177)
16 3pdi_B Nitrogenase MOFE cofact 21.6 1.4E+02 0.0046 28.3 6.0 68 165-237 310-385 (458)
17 3eme_A Rhodanese-like domain p 20.6 50 0.0017 23.9 2.1 14 59-72 81-94 (103)
18 3foj_A Uncharacterized protein 20.4 52 0.0018 23.6 2.2 14 59-72 81-94 (100)
No 1
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=100.00 E-value=7.4e-56 Score=414.31 Aligned_cols=211 Identities=25% Similarity=0.345 Sum_probs=172.3
Q ss_pred CcccccCCCCceEEEccchHHHHHHHHHHhCCCCCCcccccccccCCCCcccccccCcccEEEecCCCCCccccCCceEE
Q 023313 1 MLERHLLERPAKIGVGANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIV 80 (284)
Q Consensus 1 ~l~~~l~~~~~~v~V~~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIIlDDGfQH~~L~RDl~Iv 80 (284)
|||+++|+ +||+|++||+++++.++++.+ +|||||||||||++|+||+|||
T Consensus 103 lla~~~~~--~~v~v~~~R~~~~~~~~~~~~---------------------------~dviIlDDGfQh~~l~rDl~Iv 153 (315)
T 4ehx_A 103 LMAKLLPH--VSVVASEDRYKGGLLALEKLS---------------------------PEVFILDDGFQHRKLHRDLNIL 153 (315)
T ss_dssp HHHHHCTT--SEEEEESSHHHHHHHHHHHHC---------------------------CSEEEEETCTTCTTBCCSEEEE
T ss_pred HHHHhCCC--ceEEEecchHHHHHHHhhccC---------------------------CcEEEecCccccccccccceEE
Confidence 67888887 679999999999999988877 8999999999999999999999
Q ss_pred EEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhhccCccEEEEEEecCeeEEeCCCCCc
Q 023313 81 MVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTRMVPSYLFEVGNINSK 160 (284)
Q Consensus 81 l~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~~~~~~vf~~~~~~~~~~~~~~~~~~ 160 (284)
|+|+ +||||++||+||||||.++|+|||+||+|+.+.... ......+.+........+. ....+.
T Consensus 154 v~d~--~~gng~lLPaGpLREp~~~l~raD~iii~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--~~~~~~ 218 (315)
T 4ehx_A 154 LLKK--KDLKDRLLPAGNLREPLKEIRRADALVLTYQEVEPF-----------EFFTGKPTFKMFREFCCLL--NSDFEE 218 (315)
T ss_dssp EEEH--HHHTCCBTTTSSBSSCGGGGGGCSEEEEECTTTSCC-----------CCCCSSCEEEEEEEEEEEE--CTTSCE
T ss_pred Eeee--eccCCeecccccccCChhHhhhccEEEEecCCcchh-----------hHhhccchhhhcchhhhhh--cccccc
Confidence 9994 689999999999999999999999999998542110 0112445665554433332 233344
Q ss_pred ccccccCCCeEEEEecCCChHHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCeEEEcCcCcCC
Q 023313 161 IPLTAVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVTEKDYDR 240 (284)
Q Consensus 161 ~~~~~l~g~~v~a~sGIgnP~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~~~~~~~~~~~iltTEKDaVK 240 (284)
.+++.++|++++||||||||++||++|+++|+++++++.|||||.||+.+++ ++..||||||||||
T Consensus 219 ~~~~~~~~~~v~a~aGIgnP~~F~~~L~~~g~~i~~~~~fpDHh~fs~~~~~--------------~~~~iltTEKDaVK 284 (315)
T 4ehx_A 219 VPFDILKEREVIAFSGLGDNGQFRKVLKNLGIKVKEFMSFPDHYDYSDFTPE--------------EGEIYLTTPKDLIK 284 (315)
T ss_dssp ECGGGGTTCCEEEEESSTHHHHHHHHHHHHTCCEEEEEECCTTCCCSSCCCC--------------TTCCEEECHHHHTT
T ss_pred cchhhhhhhhhhhhhhcCCcHHHHHHHHHcCCceeeeEecCChhhhchhhhc--------------cCCeEEECchhhhh
Confidence 5667789999999999999999999999999999999999999999976543 24679999999999
Q ss_pred ChhHHhhccCceEEEEeeEEEEeecCCCChHHHHHHHHHh
Q 023313 241 DPEILMHLEAYKVLVLCSKLQIIPCRGCTEDSFKLLLKEL 280 (284)
Q Consensus 241 l~~~~~~~~~~~i~~l~i~~~~~p~~~~~~~~f~~~l~~~ 280 (284)
|+. . .++|++++++++. +++.|.++|.+.
T Consensus 285 l~~----~--~~i~~l~i~~~i~-----~e~~l~~~i~ki 313 (315)
T 4ehx_A 285 LQG----Y--ENVFALNFKVKLE-----REEKLKKLIYRI 313 (315)
T ss_dssp CTT----C--TTEEEEEEEEEET-----THHHHHHHHHHT
T ss_pred CcC----c--CCCEEEEEEEEEC-----ChHHHHHHHHHh
Confidence 863 1 3689999999984 677888888764
No 2
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=68.80 E-value=4.5 Score=33.40 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=41.0
Q ss_pred cCcccEEEec-----CCCCCccccCCceEEEEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhh--hhHHHH
Q 023313 56 SGKIGAVILD-----DGMQHWSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISE--QNLKDI 128 (284)
Q Consensus 56 ~~~~dvIIlD-----DGfQH~~L~RDl~Ivl~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~--~~~~~i 128 (284)
..++|++|.| +.-.|+.+..+.-|+++|+..+.. .. + +-...+..++++|+||.|.... .+.+.+
T Consensus 106 ~~~~d~iiidt~G~~~~~~~~~~~~~~~i~vvd~~~~~~--~~-----~-~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 106 FSDCDLLLIENVGNLICPVDFDLGENYRVVMVSVTEGDD--VV-----E-KHPEIFRVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp GTTCSEEEEEEEEBSSGGGGCCCSCSEEEEEEEGGGCTT--HH-----H-HCHHHHHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred cCCCCEEEEeCCCCCCCCchhccccCcEEEEEeCCCcch--hh-----h-hhhhhhhcCCEEEEecccCCcchhhHHHHH
Confidence 3467888886 444455556788888999865421 11 0 1112346778999999876432 133444
Q ss_pred HHHHHh
Q 023313 129 ELEMRD 134 (284)
Q Consensus 129 ~~~~~~ 134 (284)
...+..
T Consensus 178 ~~~~~~ 183 (221)
T 2wsm_A 178 KADAKL 183 (221)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 3
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=51.18 E-value=24 Score=29.16 Aligned_cols=50 Identities=12% Similarity=0.280 Sum_probs=39.7
Q ss_pred cCCCeEEEEecCCCh-------HHHHHHHHHhCCcccceecCCC-CCCCCHHHHHHHHH
Q 023313 166 VCNANVLCVSAIGSA-------NAFVQSLQKLGPCSVNRLDFND-HHSFQARDIEMIKK 216 (284)
Q Consensus 166 l~g~~v~a~sGIgnP-------~~F~~~L~~~G~~~~~~~~FpD-Hh~ft~~dl~~i~~ 216 (284)
+++.+++++.|-.+| +.+.+.|++.|.. ++.+.||+ -|..+.++++.+.+
T Consensus 149 ~~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~-v~~~~ypg~gH~i~~~el~~i~~ 206 (210)
T 4h0c_A 149 FKQTPVFISTGNPDPHVPVSRVQESVTILEDMNAA-VSQVVYPGRPHTISGDEIQLVNN 206 (210)
T ss_dssp CTTCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCE-EEEEEEETCCSSCCHHHHHHHHH
T ss_pred ccCCceEEEecCCCCccCHHHHHHHHHHHHHCCCC-eEEEEECCCCCCcCHHHHHHHHH
Confidence 456789999998886 4677789999976 55778987 78899999887653
No 4
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=41.38 E-value=28 Score=27.26 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=41.4
Q ss_pred cccccCCCCceEEEccchHHHH-HHHHHHhCCCCCCcccccccccCCCCcccccccCcccEEEecCCCCCccccCCceEE
Q 023313 2 LERHLLERPAKIGVGANRAATA-ASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVILDDGMQHWSLRRDLEIV 80 (284)
Q Consensus 2 l~~~l~~~~~~v~V~~~R~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIIlDDGfQH~~L~RDl~Iv 80 (284)
|.+-|.|+-+-+-+...=++.+ ...++.|| ..++..|+..-+ +|.||+
T Consensus 1 ~ekLLdgVt~lLdIts~Eir~IV~~~L~~~G---------------------------A~~i~~der~~~----~eyDi~ 49 (117)
T 2kx7_A 1 MERLLDDVCVMVDVTSAEIRNIVTRQLENWG---------------------------ATCITPDERLIS----QDYDIF 49 (117)
T ss_dssp CCCSSSSEEEEEECSSHHHHHHHHHHHHHHT---------------------------EEEECCCSSSSC----CCCSEE
T ss_pred CcccccCcEEEEEcCcHHHHHHHHHHHHhcC---------------------------CeEEeccccCCC----CcccEE
Confidence 4556777666666666666665 56778898 899999987654 788999
Q ss_pred EEeCC-CCCCC
Q 023313 81 MVNGL-MPWGN 90 (284)
Q Consensus 81 l~D~~-~~fgn 90 (284)
+.|.. +.+.+
T Consensus 50 lTDnp~~~~~~ 60 (117)
T 2kx7_A 50 LTDNPSNLTAS 60 (117)
T ss_dssp EEESGGGCSSS
T ss_pred EecCccccCcC
Confidence 99964 34443
No 5
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=39.17 E-value=51 Score=27.09 Aligned_cols=58 Identities=7% Similarity=0.100 Sum_probs=42.0
Q ss_pred ccCCCeEEEEecCCChH------------HHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHHhh
Q 023313 165 AVCNANVLCVSAIGSAN------------AFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELE 222 (284)
Q Consensus 165 ~l~g~~v~a~sGIgnP~------------~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~~~ 222 (284)
.++||++++++--|.|. .+..++.-.|+..+..+.+..-..-++++.++..+++++..
T Consensus 116 ~l~gK~~~~i~t~g~~~~y~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~ 185 (196)
T 3lcm_A 116 HLQGKSAWIITTHNTPSFAMPFVQDYGKVLKKQILKPCAISPVKLTELTSIEKISDDERQKLLHKVAQIT 185 (196)
T ss_dssp SCTTCEEEEEEECSSCGGGTTTSSCTTHHHHHHTTGGGTCCCEEEEEECSTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCchhhHhhhccCHHHHHHHHHHhcCCceeeEEEEeCcCCCCHHHHHHHHHHHHHHH
Confidence 36889977776667772 12234567898888888888777778888888888777764
No 6
>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*
Probab=37.67 E-value=72 Score=27.86 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=41.5
Q ss_pred CCCeEEEEecCCCh-------HHHHHHHHHhCCcccceecCCC-CCCCCHHHHHHHHHHHHH
Q 023313 167 CNANVLCVSAIGSA-------NAFVQSLQKLGPCSVNRLDFND-HHSFQARDIEMIKKKLEE 220 (284)
Q Consensus 167 ~g~~v~a~sGIgnP-------~~F~~~L~~~G~~~~~~~~FpD-Hh~ft~~dl~~i~~~a~~ 220 (284)
+..+++++.|-.+| +.+.+.|++.|.. ++.+.|++ -|.++.+++..+.+..++
T Consensus 204 ~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~g~~-~~~~~y~g~gH~i~~~~l~~~~~fL~~ 264 (285)
T 4fhz_A 204 SKPPVLLVHGDADPVVPFADMSLAGEALAEAGFT-TYGHVMKGTGHGIAPDGLSVALAFLKE 264 (285)
T ss_dssp CCCCEEEEEETTCSSSCTHHHHHHHHHHHHTTCC-EEEEEETTCCSSCCHHHHHHHHHHHHH
T ss_pred hcCcccceeeCCCCCcCHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 45679999998886 5778889999986 45678887 788999999887765443
No 7
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=35.82 E-value=71 Score=25.92 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=13.0
Q ss_pred ccccccEEEEcCCcchh
Q 023313 105 ALKRADIAVVHHADLIS 121 (284)
Q Consensus 105 ~l~rAD~vvvt~~~~~~ 121 (284)
.+..++++|+||.|...
T Consensus 162 ~~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 162 IMKTADLIVINKIDLAD 178 (226)
T ss_dssp HHTTCSEEEEECGGGHH
T ss_pred HhhcCCEEEEeccccCc
Confidence 36678899999987644
No 8
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=33.86 E-value=54 Score=23.25 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=11.4
Q ss_pred ccEEEecCCCCCcc
Q 023313 59 IGAVILDDGMQHWS 72 (284)
Q Consensus 59 ~dvIIlDDGfQH~~ 72 (284)
.+|.+|+.||+-|.
T Consensus 78 ~~v~~l~GG~~~W~ 91 (94)
T 1wv9_A 78 YEAMSLEGGLQALT 91 (94)
T ss_dssp CCEEEETTGGGCC-
T ss_pred CcEEEEcccHHHHH
Confidence 56999999999874
No 9
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=33.53 E-value=87 Score=26.53 Aligned_cols=51 Identities=14% Similarity=0.185 Sum_probs=39.8
Q ss_pred CCCeEEEEecCCCh-------HHHHHHHHHhCCcccceecCCC-CCCCCHHHHHHHHHHH
Q 023313 167 CNANVLCVSAIGSA-------NAFVQSLQKLGPCSVNRLDFND-HHSFQARDIEMIKKKL 218 (284)
Q Consensus 167 ~g~~v~a~sGIgnP-------~~F~~~L~~~G~~~~~~~~FpD-Hh~ft~~dl~~i~~~a 218 (284)
++.+++++-|-.+| +...+.|++.|..+ +...||+ -|..+.++++.+.+..
T Consensus 182 ~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v-~~~~y~g~gH~i~~~~l~~~~~fL 240 (246)
T 4f21_A 182 KGLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFAN-EYKHYVGMQHSVCMEEIKDISNFI 240 (246)
T ss_dssp TTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCE-EEEEESSCCSSCCHHHHHHHHHHH
T ss_pred cCCchhhcccCCCCccCHHHHHHHHHHHHHCCCCe-EEEEECCCCCccCHHHHHHHHHHH
Confidence 45679999998886 45677899999864 5678986 6789999998876643
No 10
>1fgl_B HIV-1 GAG protein; cyclophilin, binding protein for cyclosporin A, AIDS, isomer peptide complex; 1.80A {Human immunodeficiency virus type 1}
Probab=32.14 E-value=15 Score=21.20 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=10.2
Q ss_pred cccCCCCCCCcc
Q 023313 93 LLPLGPLREPLM 104 (284)
Q Consensus 93 lLPaG~LREp~~ 104 (284)
-+|.|.+|||..
T Consensus 10 p~p~gq~R~P~G 21 (26)
T 1fgl_B 10 PIAPGQLREPRG 21 (26)
T ss_pred CCCCCCccCCCc
Confidence 578999999964
No 11
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=30.91 E-value=1.1e+02 Score=24.95 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=36.3
Q ss_pred cCCCeEEEEecCCCh---------------HHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHH
Q 023313 166 VCNANVLCVSAIGSA---------------NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEE 220 (284)
Q Consensus 166 l~g~~v~a~sGIgnP---------------~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~ 220 (284)
++||++++++.=|.| ..+...|.-.|+..+..+.+... .+++++.+++.+.+++
T Consensus 135 l~gK~~~~i~t~g~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~~~~~v~~~g~-~~~~~~~~~~l~~a~~ 203 (212)
T 3r6w_A 135 LRGKRALIVTSRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGE-ESGGRSFEDSCDEAEQ 203 (212)
T ss_dssp CCSCEEEEEEECSSSCCSTTCTTGGGCCSHHHHHHHHHHHTCCEEEEEEECCT-TTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEecCCCCcCCCCCCCchhhhHHHHHHHHHHCCCceeEEEEEecc-cCCHHHHHHHHHHHHH
Confidence 578887766665644 22345577889988877666554 4578778777766654
No 12
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0
Probab=27.91 E-value=1.8e+02 Score=22.68 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCCeEEEEecCCCh-------HHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHH
Q 023313 167 CNANVLCVSAIGSA-------NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLE 219 (284)
Q Consensus 167 ~g~~v~a~sGIgnP-------~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~ 219 (284)
...+++++.|-.++ +.+.+.|++.|.. +....|+--|.|+.+++..+.+..+
T Consensus 148 ~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~~~~-~~~~~~~~gH~~~~~~~~~~~~~l~ 206 (209)
T 3og9_A 148 DDKHVFLSYAPNDMIVPQKNFGDLKGDLEDSGCQ-LEIYESSLGHQLTQEEVLAAKKWLT 206 (209)
T ss_dssp TTCEEEEEECTTCSSSCHHHHHHHHHHHHHTTCE-EEEEECSSTTSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCccCHHHHHHHHHHHHHcCCc-eEEEEcCCCCcCCHHHHHHHHHHHH
Confidence 45689999997764 4678889999975 4456788889999998887766443
No 13
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=27.43 E-value=58 Score=29.30 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=39.0
Q ss_pred EEEecCCCCCccc-cCCceEEEEeCCCCCCCCccccCCCC--CCCcccccc---ccEEEEcC--CcchhhhhHHHHHHHH
Q 023313 61 AVILDDGMQHWSL-RRDLEIVMVNGLMPWGNRKLLPLGPL--REPLMALKR---ADIAVVHH--ADLISEQNLKDIELEM 132 (284)
Q Consensus 61 vIIlDDGfQH~~L-~RDl~Ivl~D~~~~fgng~lLPaG~L--REp~~~l~r---AD~vvvt~--~~~~~~~~~~~i~~~~ 132 (284)
=|+.+||++..+- .+-+|++++|..+|.| |+..| +|....+++ -|-|+++. +..........+.+.+
T Consensus 141 ~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~-----~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l 215 (294)
T 3o4f_A 141 KLVIDDGVNFVNQTSQTFDVIISDCTDPIG-----PGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKL 215 (294)
T ss_dssp EEEESCTTTTTSCSSCCEEEEEESCCCCCC-----TTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHH
T ss_pred EEEechHHHHHhhccccCCEEEEeCCCcCC-----CchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHH
Confidence 3567899987543 3459999999998877 55555 333333333 35555553 2222233344444555
Q ss_pred Hh
Q 023313 133 RD 134 (284)
Q Consensus 133 ~~ 134 (284)
+.
T Consensus 216 ~~ 217 (294)
T 3o4f_A 216 SH 217 (294)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 14
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=24.13 E-value=1.2e+02 Score=28.85 Aligned_cols=32 Identities=25% Similarity=0.166 Sum_probs=27.3
Q ss_pred ccCCCeEEEEecCCChHHHHHHHHHhCCcccc
Q 023313 165 AVCNANVLCVSAIGSANAFVQSLQKLGPCSVN 196 (284)
Q Consensus 165 ~l~g~~v~a~sGIgnP~~F~~~L~~~G~~~~~ 196 (284)
.+.||+++++.|=..+....+.|+++|++++.
T Consensus 329 ~l~GKrv~i~~~~~~~~~l~~~L~ElGmevv~ 360 (483)
T 3pdi_A 329 RLEGKRVLLYTGGVKSWSVVSALQDLGMKVVA 360 (483)
T ss_dssp HHTTCEEEEECSSSCHHHHHHHHHHHTCEEEE
T ss_pred HhcCCEEEEECCCchHHHHHHHHHHCCCEEEE
Confidence 37899999998877788888899999998765
No 15
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=22.82 E-value=1.2e+02 Score=24.79 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=38.7
Q ss_pred cCCCeEEEEecCCChHH------------------HHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHH
Q 023313 166 VCNANVLCVSAIGSANA------------------FVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEE 220 (284)
Q Consensus 166 l~g~~v~a~sGIgnP~~------------------F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~ 220 (284)
++||++.+++--|.|+. |..++.-.|++....+.+.+-...+++++++..+++++
T Consensus 90 l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~~~~~g~~~~~~~~~~~~l~~~~~ 162 (177)
T 3ha2_A 90 LEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPILAVHQFLYLEPDAQQRLLVAYQQ 162 (177)
T ss_dssp TTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCCEEEESGGGSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68888777766676642 23456677888877777777777788888877666554
No 16
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=21.62 E-value=1.4e+02 Score=28.31 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=43.2
Q ss_pred ccCCCeEEEEecCCChHHHHHHHHHhCCcccceecCCCCCCCCH--------HHHHHHHHHHHHhhcCCCCCCeEEEcCc
Q 023313 165 AVCNANVLCVSAIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQA--------RDIEMIKKKLEELEGKFNPKPIVVVTEK 236 (284)
Q Consensus 165 ~l~g~~v~a~sGIgnP~~F~~~L~~~G~~~~~~~~FpDHh~ft~--------~dl~~i~~~a~~~~~~~~~~~~iltTEK 236 (284)
.+.||+++++.+=...-.+-+.|+++|.+++.....-..-.|.. .|+..+.+..++.+ .+.++.+-+
T Consensus 310 ~l~Gkrv~i~~~~~~~~~l~~~L~elGm~vv~~~~~~~~~~~~~~~~~~v~~~D~~~le~~i~~~~-----pDllig~~~ 384 (458)
T 3pdi_B 310 MLSSARTAIAADPDLLLGFDALLRSMGAHTVAAVVPARAAALVDSPLPSVRVGDLEDLEHAARAGQ-----AQLVIGNSH 384 (458)
T ss_dssp HHTTCEEEEECCHHHHHHHHHHHHTTTCEEEEEEESSCCSCCTTTTSSCEEESHHHHHHHHHHHHT-----CSEEEECTT
T ss_pred hcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEECCCChhhhhCccCcEEeCCHHHHHHHHHhcC-----CCEEEEChh
Confidence 37899998876644444677788999998765433221113332 37777666555542 468899877
Q ss_pred C
Q 023313 237 D 237 (284)
Q Consensus 237 D 237 (284)
.
T Consensus 385 ~ 385 (458)
T 3pdi_B 385 A 385 (458)
T ss_dssp H
T ss_pred H
Confidence 6
No 17
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=20.59 E-value=50 Score=23.86 Aligned_cols=14 Identities=43% Similarity=0.895 Sum_probs=12.2
Q ss_pred ccEEEecCCCCCcc
Q 023313 59 IGAVILDDGMQHWS 72 (284)
Q Consensus 59 ~dvIIlDDGfQH~~ 72 (284)
.+|.+|+.||+-|.
T Consensus 81 ~~v~~l~GG~~~W~ 94 (103)
T 3eme_A 81 IDAVNVEGGMHAWG 94 (103)
T ss_dssp CEEEEETTHHHHHC
T ss_pred CCeEEeCCCHHHHH
Confidence 69999999998774
No 18
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=20.35 E-value=52 Score=23.63 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=12.0
Q ss_pred ccEEEecCCCCCcc
Q 023313 59 IGAVILDDGMQHWS 72 (284)
Q Consensus 59 ~dvIIlDDGfQH~~ 72 (284)
.+|.+|+.||+-|.
T Consensus 81 ~~v~~l~GG~~~W~ 94 (100)
T 3foj_A 81 VNAVNVEGGMDEFG 94 (100)
T ss_dssp CEEEEETTHHHHHC
T ss_pred CCEEEecccHHHHH
Confidence 69999999998764
Done!