Query 023313
Match_columns 284
No_of_seqs 192 out of 1000
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 04:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023313.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023313hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nija1 c.37.1.10 (A:2-223) Hy 83.3 0.12 8.8E-06 42.6 0.3 68 71-145 118-185 (222)
2 d2h1ia1 c.69.1.14 (A:1-202) Ca 53.0 20 0.0015 26.6 7.3 52 167-219 141-199 (202)
3 d2r8ba1 c.69.1.14 (A:44-246) U 45.8 11 0.00079 28.4 4.5 52 167-219 142-200 (203)
4 d2bgra2 c.69.1.24 (A:509-766) 39.0 27 0.002 27.0 6.2 44 166-210 187-238 (258)
5 d1ixka_ c.66.1.38 (A:) Hypothe 31.7 40 0.0029 28.1 6.3 59 3-87 135-196 (313)
6 d1dcfa_ c.23.1.2 (A:) Receiver 31.6 23 0.0017 25.5 4.1 34 59-92 32-66 (134)
7 d1auoa_ c.69.1.14 (A:) Carboxy 29.5 45 0.0033 25.1 5.9 51 167-218 156-213 (218)
8 d1yt8a4 c.46.1.2 (A:243-372) T 28.9 30 0.0022 24.7 4.4 14 59-72 105-118 (130)
9 d1yt8a2 c.46.1.2 (A:6-106) Thi 28.0 12 0.00088 25.4 1.8 14 59-72 84-97 (101)
10 d1hjsa_ c.1.8.3 (A:) Beta-1,4- 25.5 48 0.0035 26.6 5.6 45 177-221 26-72 (332)
11 d1vzya2 g.81.1.1 (A:234-290) H 25.2 5.9 0.00043 25.2 -0.4 41 176-217 15-55 (57)
12 d1zh2a1 c.23.1.1 (A:2-120) Tra 25.0 22 0.0016 25.1 2.8 27 3-30 17-43 (119)
13 d2b2ca1 c.66.1.17 (A:3-314) Sp 24.7 12 0.00086 32.0 1.4 69 61-134 163-239 (312)
14 d1mvoa_ c.23.1.1 (A:) PhoP rec 24.6 17 0.0012 25.7 2.1 22 6-27 22-43 (121)
15 d1ycga1 c.23.5.1 (A:251-399) N 24.1 57 0.0041 23.3 5.3 42 180-221 102-143 (149)
16 d1uz5a3 c.57.1.2 (A:181-328) M 23.8 50 0.0037 24.3 4.9 52 179-240 28-85 (148)
17 d1qo0d_ c.23.1.3 (D:) Positive 22.6 36 0.0026 25.3 3.9 27 59-87 36-62 (189)
18 d1m7ja2 b.92.1.6 (A:420-480) N 20.6 49 0.0036 20.7 3.6 35 76-116 7-41 (61)
No 1
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=83.26 E-value=0.12 Score=42.65 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=44.5
Q ss_pred ccccCCceEEEEeCCCCCCCCccccCCCCCCCccccccccEEEEcCCcchhhhhHHHHHHHHHhhccCccEEEEE
Q 023313 71 WSLRRDLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHHADLISEQNLKDIELEMRDIKKSLSIFFTR 145 (284)
Q Consensus 71 ~~L~RDl~Ivl~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~~~~~~~~~~~~i~~~~~~~~~~~~vf~~~ 145 (284)
....-|-=|+++|+.+....-.-. -+....+..||+||+||.|.+++ .+.+++.++.+++..+++.+.
T Consensus 118 ~~~~l~~vi~vVDa~~~~~~~~~~-----~~~~~Qi~~AD~ivlNK~Dl~~~--~~~~~~~l~~lNP~a~Ii~~~ 185 (222)
T d1nija1 118 QRYLLDGVIALVDAVHADEQMNQF-----TIAQSQVGYADRILLTKTDVAGE--AEKLHERLARINARAPVYTVT 185 (222)
T ss_dssp HHEEEEEEEEEEETTTHHHHHHHC-----HHHHHHHHTCSEEEEECTTTCSC--THHHHHHHHHHCSSSCEEECC
T ss_pred ccccccchhhhhhhhhhhhhhhhh-----HHHHHHHHhCCcccccccccccH--HHHHHHHHHHHhCCCeEEEee
Confidence 333445558899987542210011 12335688999999999887643 457888888898888886433
No 2
>d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]}
Probab=53.04 E-value=20 Score=26.63 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=40.8
Q ss_pred CCCeEEEEecCCCh-------HHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHH
Q 023313 167 CNANVLCVSAIGSA-------NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLE 219 (284)
Q Consensus 167 ~g~~v~a~sGIgnP-------~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~ 219 (284)
...+++.+.|-.+| +.+.+.|++.|++ ++.+.||.-|.++.++++.+.+..+
T Consensus 141 ~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~g~~-~~~~~~~ggH~~~~~~~~~~~~wl~ 199 (202)
T d2h1ia1 141 AGKSVFIAAGTNDPICSSAESEELKVLLENANAN-VTMHWENRGHQLTMGEVEKAKEWYD 199 (202)
T ss_dssp TTCEEEEEEESSCSSSCHHHHHHHHHHHHTTTCE-EEEEEESSTTSCCHHHHHHHHHHHH
T ss_pred ccchhhcccccCCCccCHHHHHHHHHHHHHCCCC-EEEEEECCCCcCCHHHHHHHHHHHH
Confidence 45678888998875 5678889999986 4567899888999999988876543
No 3
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=45.77 E-value=11 Score=28.41 Aligned_cols=52 Identities=19% Similarity=0.249 Sum_probs=40.6
Q ss_pred CCCeEEEEecCCCh-------HHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHH
Q 023313 167 CNANVLCVSAIGSA-------NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLE 219 (284)
Q Consensus 167 ~g~~v~a~sGIgnP-------~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~ 219 (284)
...+++++.|--+| +++.+.|++.|+. +..+.|+.-|.++.++++.+.+...
T Consensus 142 ~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~g~~-v~~~~~~ggH~~~~~~~~~~~~wl~ 200 (203)
T d2r8ba1 142 PTRRVLITAGERDPICPVQLTKALEESLKAQGGT-VETVWHPGGHEIRSGEIDAVRGFLA 200 (203)
T ss_dssp TTCEEEEEEETTCTTSCHHHHHHHHHHHHHHSSE-EEEEEESSCSSCCHHHHHHHHHHHG
T ss_pred ccchhhccccCCCCcccHHHHHHHHHHHHHCCCC-EEEEEECCCCcCCHHHHHHHHHHHH
Confidence 45678888886664 5789999999986 4567889999999999988765443
No 4
>d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=39.03 E-value=27 Score=26.95 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=34.2
Q ss_pred cCCCeEEEEecCCCh-------HHHHHHHHHhCCcccceecCCC-CCCCCHHH
Q 023313 166 VCNANVLCVSAIGSA-------NAFVQSLQKLGPCSVNRLDFND-HHSFQARD 210 (284)
Q Consensus 166 l~g~~v~a~sGIgnP-------~~F~~~L~~~G~~~~~~~~FpD-Hh~ft~~d 210 (284)
+++.+++++.|=.++ ++|++.|++.|.. ++.+.||+ .|.|...+
T Consensus 187 ~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~g~~-~~~~~~~g~~H~~~~~~ 238 (258)
T d2bgra2 187 FKQVEYLLIHGTADDNVHFQQSAQISKALVDVGVD-FQAMWYTDEDHGIASST 238 (258)
T ss_dssp GGGSEEEEEEETTCSSSCTHHHHHHHHHHHHHTCC-CEEEEETTCCTTCCSHH
T ss_pred cccCChheeeecCCCcccHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCc
Confidence 455689999996664 8899999999975 55788998 78775544
No 5
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=31.70 E-value=40 Score=28.13 Aligned_cols=59 Identities=7% Similarity=0.179 Sum_probs=38.2
Q ss_pred ccccCCCCceEEEc--cchHHHHHHHHHHhCCCCCCcccccccccCCCCcccccccCcccEEE-ecCCCCCccccCCceE
Q 023313 3 ERHLLERPAKIGVG--ANRAATAASFIEKYGYVDPRDCASSQKNCINPKVGSHLKSGKIGAVI-LDDGMQHWSLRRDLEI 79 (284)
Q Consensus 3 ~~~l~~~~~~v~V~--~~R~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvII-lDDGfQH~~L~RDl~I 79 (284)
+..+.+...-++++ ++|.+..+..+++.|. .++++ -+|+++--.....+|.
T Consensus 135 ~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~--------------------------~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 135 AQLMRNDGVIYAFDVDENRLRETRLNLSRLGV--------------------------LNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp HHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC--------------------------CSEEEESSCGGGGGGGCCCEEE
T ss_pred hhhcccccceeeeccCHHHHHHHHHHHHHHHh--------------------------hccccccccccccccccccccE
Confidence 33344444445544 4477777777777762 34444 4677776677788999
Q ss_pred EEEeCCCC
Q 023313 80 VMVNGLMP 87 (284)
Q Consensus 80 vl~D~~~~ 87 (284)
||+|+-..
T Consensus 189 ILvDaPCS 196 (313)
T d1ixka_ 189 ILLDAPCT 196 (313)
T ss_dssp EEEECCTT
T ss_pred EEEccccc
Confidence 99998653
No 6
>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.61 E-value=23 Score=25.54 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=23.1
Q ss_pred ccEEEecCCCCCcc-ccCCceEEEEeCCCCCCCCc
Q 023313 59 IGAVILDDGMQHWS-LRRDLEIVMVNGLMPWGNRK 92 (284)
Q Consensus 59 ~dvIIlDDGfQH~~-L~RDl~Ivl~D~~~~fgng~ 92 (284)
++|....||-+=.. +..+.+++++|..-|-.||+
T Consensus 32 ~~v~~a~~g~eal~~l~~~~dlillD~~mP~~dG~ 66 (134)
T d1dcfa_ 32 CEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENY 66 (134)
T ss_dssp CEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTT
T ss_pred CEEEEECCHHHHHHHhhcCCCeEEEEeccCCCchH
Confidence 78888888763322 24567888888776655554
No 7
>d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]}
Probab=29.46 E-value=45 Score=25.15 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=40.2
Q ss_pred CCCeEEEEecCCCh-------HHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHH
Q 023313 167 CNANVLCVSAIGSA-------NAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKL 218 (284)
Q Consensus 167 ~g~~v~a~sGIgnP-------~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a 218 (284)
+..+++.+-|--++ +.+.+.|++.|.+ ++.+.||.=|.++++++..+.+..
T Consensus 156 ~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~g~~-~~~~~~~~gH~i~~~~~~~i~~wl 213 (218)
T d1auoa_ 156 QRIPALCLHGQYDDVVQNAMGRSAFEHLKSRGVT-VTWQEYPMGHEVLPQEIHDIGAWL 213 (218)
T ss_dssp HTCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCC-EEEEEESCSSSCCHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCCccCHHHHHHHHHHHHHCCCC-EEEEEECCCCccCHHHHHHHHHHH
Confidence 45679999998875 5778889999975 446678888999999998877643
No 8
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.89 E-value=30 Score=24.74 Aligned_cols=14 Identities=14% Similarity=-0.083 Sum_probs=12.6
Q ss_pred ccEEEecCCCCCcc
Q 023313 59 IGAVILDDGMQHWS 72 (284)
Q Consensus 59 ~dvIIlDDGfQH~~ 72 (284)
.++.+||.|++-|.
T Consensus 105 ~~v~~l~GG~~aw~ 118 (130)
T d1yt8a4 105 WQVAVLDGLSEADF 118 (130)
T ss_dssp CEEEEECSCCGGGC
T ss_pred CCeEEEcCchHHHH
Confidence 79999999999884
No 9
>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.02 E-value=12 Score=25.44 Aligned_cols=14 Identities=29% Similarity=0.769 Sum_probs=11.7
Q ss_pred ccEEEecCCCCCcc
Q 023313 59 IGAVILDDGMQHWS 72 (284)
Q Consensus 59 ~dvIIlDDGfQH~~ 72 (284)
.+|.+||+||+-|+
T Consensus 84 ~nV~~l~GG~~~W~ 97 (101)
T d1yt8a2 84 SDVALLDGGLSGWR 97 (101)
T ss_dssp SSEEEETTHHHHHH
T ss_pred CcEEEeCChHHHHH
Confidence 57999999998664
No 10
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]}
Probab=25.46 E-value=48 Score=26.59 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHhCCcccceecCCCCCC--CCHHHHHHHHHHHHHh
Q 023313 177 IGSANAFVQSLQKLGPCSVNRLDFNDHHS--FQARDIEMIKKKLEEL 221 (284)
Q Consensus 177 IgnP~~F~~~L~~~G~~~~~~~~FpDHh~--ft~~dl~~i~~~a~~~ 221 (284)
=|+++.+++.|++.|+..+....+-||.. |..+.+.++.+.|++.
T Consensus 26 ~~~~~~~~~~lk~~G~n~VRi~vW~~p~~g~~~~~~~~~~v~~a~~~ 72 (332)
T d1hjsa_ 26 NGNAQPLENILAANGVNTVRQRVWVNPADGNYNLDYNIAIAKRAKAA 72 (332)
T ss_dssp TSCBCCHHHHHHHTTCCEEEEEECSSCTTCTTSHHHHHHHHHHHHHT
T ss_pred CCCcccHHHHHHHcCCCEEEeeeeecCCCCccCHHHHHHHHHHHHHC
Confidence 36789999999999998765434666664 5667777877777764
No 11
>d1vzya2 g.81.1.1 (A:234-290) HSP33, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=25.18 E-value=5.9 Score=25.24 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=26.3
Q ss_pred cCCChHHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHH
Q 023313 176 AIGSANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKK 217 (284)
Q Consensus 176 GIgnP~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~ 217 (284)
++| ++...+++++.|-..+....=.-+|.|+++||+.|.+.
T Consensus 15 ~l~-~~el~~~~~e~g~iev~C~fC~~~Y~f~~~dl~~l~~~ 55 (57)
T d1vzya2 15 GLG-KKEIQDMIEEDGQAEAVCHFCNEKYLFTKEELEGLRDQ 55 (57)
T ss_dssp TTC-HHHHHHHHHHHSEEEEECTTTCCEEEEEHHHHHHHHHH
T ss_pred hcC-HHHHHHHHHcCCCEEEEeeCCCCEEEECHHHHHHHHhc
Confidence 444 44455566666632243445567889999999988764
No 12
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.02 E-value=22 Score=25.05 Aligned_cols=27 Identities=4% Similarity=-0.162 Sum_probs=14.9
Q ss_pred ccccCCCCceEEEccchHHHHHHHHHHh
Q 023313 3 ERHLLERPAKIGVGANRAATAASFIEKY 30 (284)
Q Consensus 3 ~~~l~~~~~~v~V~~~R~~~~~~l~~~~ 30 (284)
.+.|...+..|....+=.+|...+ +++
T Consensus 17 ~~~L~~~g~~v~~a~~~~eal~~l-~~~ 43 (119)
T d1zh2a1 17 RTALEGDGMRVFEAETLQRGLLEA-ATR 43 (119)
T ss_dssp HHHHHTTTCEEEEESSHHHHHHHH-HHH
T ss_pred HHHHHHCCCEEEEeCCHHHHHHHH-Hhc
Confidence 344444456676677666655544 344
No 13
>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}
Probab=24.67 E-value=12 Score=32.00 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=34.2
Q ss_pred EEEecCCCCCccc-cCCceEEEEeCCCCCCCCccccCCCC--CCCcccccc---ccEEEEcC--CcchhhhhHHHHHHHH
Q 023313 61 AVILDDGMQHWSL-RRDLEIVMVNGLMPWGNRKLLPLGPL--REPLMALKR---ADIAVVHH--ADLISEQNLKDIELEM 132 (284)
Q Consensus 61 vIIlDDGfQH~~L-~RDl~Ivl~D~~~~fgng~lLPaG~L--REp~~~l~r---AD~vvvt~--~~~~~~~~~~~i~~~~ 132 (284)
=|+.+||++..+- .+-+|++++|..+|.| |+..| +|....+++ -|-|+++. +....+.....+.+.+
T Consensus 163 ~i~i~Da~~~l~~~~~~yDvII~D~~dp~~-----~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l 237 (312)
T d2b2ca1 163 DLFCGDGFEFLKNHKNEFDVIITDSSDPVG-----PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFN 237 (312)
T ss_dssp EEECSCHHHHHHHCTTCEEEEEECCC------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred EEEEchHHHHHHhCCCCCCEEEEcCCCCCC-----cchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHh
Confidence 3557889876543 4569999999988865 55555 555554433 56666653 2223333444555555
Q ss_pred Hh
Q 023313 133 RD 134 (284)
Q Consensus 133 ~~ 134 (284)
+.
T Consensus 238 ~~ 239 (312)
T d2b2ca1 238 RK 239 (312)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 14
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=24.61 E-value=17 Score=25.67 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=12.1
Q ss_pred cCCCCceEEEccchHHHHHHHH
Q 023313 6 LLERPAKIGVGANRAATAASFI 27 (284)
Q Consensus 6 l~~~~~~v~V~~~R~~~~~~l~ 27 (284)
|...+.-|.+..+=.+|...+.
T Consensus 22 L~~~g~~v~~a~~~~~al~~l~ 43 (121)
T d1mvoa_ 22 LERSGYDVITASDGEEALKKAE 43 (121)
T ss_dssp HHHTTCEEEEESSHHHHHHHHH
T ss_pred HHHCCCEEEEECCHHHHHHHHh
Confidence 3333445666666666665544
No 15
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=24.09 E-value=57 Score=23.26 Aligned_cols=42 Identities=5% Similarity=-0.055 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHHh
Q 023313 180 ANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEEL 221 (284)
Q Consensus 180 P~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~~ 221 (284)
.+.+.+.|+..|+.++......-...-+++|++++.+.++++
T Consensus 102 ~~~l~~~l~~~g~~~v~~~~~~~~~~P~~~dl~~~~e~g~~i 143 (149)
T d1ycga1 102 QKILEERLKAAKIELIAEPGPTVQWVPRGEDLQRCYELGRKI 143 (149)
T ss_dssp HHHHHHHHHHTTCEESCSSCCEEESSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEeccceEEEcccCCHHHHHHHHHHHHHH
Confidence 456777888999877654334444445778888877666554
No 16
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=23.82 E-value=50 Score=24.28 Aligned_cols=52 Identities=17% Similarity=0.246 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHhCCcccceecCCCCCCCCHHHHHHHHHHHHHhhcCCCCCCeEEEc------CcCcCC
Q 023313 179 SANAFVQSLQKLGPCSVNRLDFNDHHSFQARDIEMIKKKLEELEGKFNPKPIVVVT------EKDYDR 240 (284)
Q Consensus 179 nP~~F~~~L~~~G~~~~~~~~FpDHh~ft~~dl~~i~~~a~~~~~~~~~~~~iltT------EKDaVK 240 (284)
|-.-+...|+++|.+++....-+|. .+.+.+..+.+.+ +.++|||| ++|+++
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~Dd----~~~i~~~i~~~~~------~~DliIttGG~s~g~~D~~~ 85 (148)
T d1uz5a3 28 NGRALCDAINELGGEGIFMGVARDD----KESLKALIEKAVN------VGDVVVISGGASGGTKDLTA 85 (148)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECSS----HHHHHHHHHHHHH------HCSEEEEECCC-----CHHH
T ss_pred ChHHHHHhhhcccccceeeeeeccH----HHHHHHHHHhhhc------cccEEEECCCcccchhhHHH
Confidence 4455566799999988777778884 4566655544433 14678886 577765
No 17
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.57 E-value=36 Score=25.35 Aligned_cols=27 Identities=4% Similarity=-0.082 Sum_probs=21.0
Q ss_pred ccEEEecCCCCCccccCCceEEEEeCCCC
Q 023313 59 IGAVILDDGMQHWSLRRDLEIVMVNGLMP 87 (284)
Q Consensus 59 ~dvIIlDDGfQH~~L~RDl~Ivl~D~~~~ 87 (284)
++|....+|-+- +..++|+|++|..-|
T Consensus 36 ~~v~~~~~~~~a--l~~~~Dlvl~D~~mp 62 (189)
T d1qo0d_ 36 CSVRQCWPPPEA--FDVPVDVVFTSIFQN 62 (189)
T ss_dssp CEEEEECSCCSS--CSSCCSEEEEECCSS
T ss_pred CcceecCCHHHh--ccCCCCEEEEcCCCC
Confidence 789988888874 467888999997543
No 18
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=20.56 E-value=49 Score=20.73 Aligned_cols=35 Identities=9% Similarity=0.041 Sum_probs=19.1
Q ss_pred CceEEEEeCCCCCCCCccccCCCCCCCccccccccEEEEcC
Q 023313 76 DLEIVMVNGLMPWGNRKLLPLGPLREPLMALKRADIAVVHH 116 (284)
Q Consensus 76 Dl~Ivl~D~~~~fgng~lLPaG~LREp~~~l~rAD~vvvt~ 116 (284)
+-||+++|...- -.....++|...-...+.+++++
T Consensus 7 ~ADlvvfDp~~i------~d~~~~~~~~~~~~Gi~~v~VnG 41 (61)
T d1m7ja2 7 YADLVVFDPATV------ADSATFEHPTERAAGIHSVYVNG 41 (61)
T ss_dssp BCCEEEECTTTC------BCCCCSSSTTCCCBSEEEEEETT
T ss_pred CCCEEEECHHHc------cCcccccccccccceeEEEEECC
Confidence 446666665431 12233445554445567888887
Done!