Query 023314
Match_columns 284
No_of_seqs 143 out of 501
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 03:05:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 2.9E-58 6.3E-63 430.5 9.2 250 4-284 300-549 (549)
2 COG4299 Uncharacterized protei 100.0 7.1E-45 1.5E-49 330.0 17.2 225 2-284 144-371 (371)
3 PF06423 GWT1: GWT1; InterPro 98.6 3.5E-07 7.6E-12 76.7 9.8 118 102-222 2-133 (136)
4 PF04235 DUF418: Protein of un 97.4 0.0011 2.3E-08 56.5 9.5 63 159-223 45-107 (163)
5 PRK10835 hypothetical protein; 93.0 2.3 4.9E-05 41.3 13.3 38 183-222 277-314 (373)
6 PF10129 OpgC_C: OpgC protein; 91.8 1 2.2E-05 43.6 9.1 64 159-225 259-322 (358)
7 PF01757 Acyl_transf_3: Acyltr 88.8 1.2 2.5E-05 39.5 6.2 22 199-222 284-305 (340)
8 PF15345 TMEM51: Transmembrane 81.2 1.4 3E-05 40.3 2.9 57 139-195 9-87 (233)
9 COG3594 NolL Fucose 4-O-acetyl 79.3 33 0.00071 33.3 11.7 48 171-225 239-286 (343)
10 COG5062 Uncharacterized membra 77.4 5.4 0.00012 38.8 5.8 161 102-284 266-429 (429)
11 PF07786 DUF1624: Protein of u 70.4 7.8 0.00017 34.2 4.8 36 100-135 159-194 (223)
12 PRK03854 opgC glucans biosynth 50.3 1E+02 0.0022 29.3 8.9 23 198-222 303-325 (375)
13 PF10658 DUF2484: Protein of u 47.4 37 0.0008 26.0 4.2 37 141-180 6-42 (77)
14 COG2311 Predicted membrane pro 47.2 1.8E+02 0.004 28.8 10.1 45 178-224 285-329 (394)
15 PF13828 DUF4190: Domain of un 46.5 45 0.00097 24.2 4.4 48 106-153 10-58 (62)
16 PRK05771 V-type ATP synthase s 39.5 77 0.0017 33.0 6.6 15 140-154 397-411 (646)
17 KOG0721 Molecular chaperone (D 37.6 27 0.00057 31.9 2.4 48 161-209 63-110 (230)
18 TIGR00806 rfc RFC reduced fola 34.8 3E+02 0.0065 28.3 9.6 56 161-221 349-406 (511)
19 TIGR02230 ATPase_gene1 F0F1-AT 32.5 1.6E+02 0.0035 23.5 5.9 28 102-129 40-69 (100)
20 PF01770 Folate_carrier: Reduc 32.1 2.9E+02 0.0063 27.5 8.9 56 161-221 336-393 (412)
21 PF11255 DUF3054: Protein of u 31.0 2.9E+02 0.0062 22.4 7.9 76 101-184 24-106 (112)
22 TIGR00924 yjdL_sub1_fam amino 28.9 3.5E+02 0.0076 26.6 9.1 108 103-215 313-430 (475)
23 KOG3700 Predicted acyltransfer 28.5 6.6E+02 0.014 26.8 11.4 104 115-222 503-619 (705)
24 cd06181 BI-1-like BAX inhibito 25.9 4E+02 0.0087 23.2 8.0 20 175-194 155-174 (212)
25 PF07698 7TM-7TMR_HD: 7TM rece 25.7 3.8E+02 0.0083 22.8 7.7 18 163-180 160-177 (194)
26 TIGR00880 2_A_01_02 Multidrug 24.4 2.9E+02 0.0063 20.4 6.1 24 106-129 2-25 (141)
27 COG1967 Predicted membrane pro 24.3 2.1E+02 0.0046 26.9 6.0 63 138-212 119-181 (271)
28 PF12832 MFS_1_like: MFS_1 lik 23.8 1.6E+02 0.0036 21.7 4.4 35 100-134 31-67 (77)
29 COG2807 CynX Cyanate permease 23.5 1.5E+02 0.0032 29.4 5.1 30 101-130 46-75 (395)
30 PF05072 Herpes_UL43: Herpesvi 23.3 4E+02 0.0087 26.2 8.0 68 100-169 232-302 (373)
31 PTZ00249 variable surface prot 23.1 60 0.0013 33.1 2.4 34 83-119 402-435 (516)
32 KOG1446 Histone H3 (Lys4) meth 22.4 35 0.00077 32.6 0.6 44 51-110 114-157 (311)
33 PRK13499 rhamnose-proton sympo 22.2 1.1E+02 0.0024 29.7 3.9 29 125-153 310-338 (345)
34 PF12036 DUF3522: Protein of u 21.6 2.2E+02 0.0048 24.9 5.4 52 102-153 112-169 (186)
35 KOG2532 Permease of the major 21.2 4.6E+02 0.0099 26.3 8.2 28 100-127 290-319 (466)
36 PRK13279 arnT 4-amino-4-deoxy- 21.0 7.4E+02 0.016 25.6 9.8 89 106-197 318-410 (552)
37 PRK05122 major facilitator sup 20.9 4.1E+02 0.009 24.6 7.5 26 105-130 54-79 (399)
38 PF05628 Borrelia_P13: Borreli 20.3 1.9E+02 0.0042 24.4 4.5 78 102-180 6-83 (135)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.9e-58 Score=430.53 Aligned_cols=250 Identities=36% Similarity=0.698 Sum_probs=225.6
Q ss_pred hhHHHHHHHHHccccCCCCccccCCCCcCCCccccccccccccCCCCCChhhhhhhhhcCCCcccCCcccccccccCCCC
Q 023314 4 CVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQDS 83 (284)
Q Consensus 4 ~l~~~~~~l~~~~~vP~~~~~~~g~g~~~~~~~~~~~c~~~~~~~~~~N~~~~iDr~~lg~~Hly~~p~~~~~~~~~~~~ 83 (284)
.+++.|..++|++.||+||+||+||||.++-+ -.|.||+++|.||++||.+|||++|++||+|+|++||
T Consensus 300 ~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~-----------~~P~CnAvGy~DrqvLGi~HiY~hP~~~r~k~cs~n~ 368 (549)
T KOG4683|consen 300 ALVATYLGLTFGLRVPGCPRGYLGPGGKHDYN-----------AHPKCNAVGYADRQVLGIAHIYQHPTAKRVKDCSINY 368 (549)
T ss_pred HhhhhhhceecccccCCCCcccccCCcccccC-----------CCCCccchhhhHHhhhhhHHHhcCchHHHhhhcccCC
Confidence 46788999999999999999999999986422 1567999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCcchhhchHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcCCcCccc
Q 023314 84 PFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPLNK 163 (284)
Q Consensus 84 ~~~g~~~~~~~~~~~~~~DPEGllstlpai~~~l~G~~aG~~L~~~~~~~~~l~~l~~~G~~ll~~G~~~~~~g~~PInK 163 (284)
|++|++|+|+|+||++||||||++|+|.|++++++|+++|+++.+.+....|+++|...++++.++|..++....+|+||
T Consensus 369 P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~~~sRir~wis~~~~l~llg~tL~~~s~~Plnk 448 (549)
T KOG4683|consen 369 PNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKNFQSRIRRWISLAILLGLLGGTLCGFSAIPLNK 448 (549)
T ss_pred CCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccchHHHHHHHHHHHHHHHHHhhhhhcccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999665689999
Q ss_pred cCCChhHHHHHhHHHHHHHHHHHHHHhhcCcccccccceecchhhHHHHHHhhhhhhhhhhhcceecCCCCCHHHHHHHH
Q 023314 164 QLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFINGWYYGDPHNTLPYWIKKH 243 (284)
Q Consensus 164 ~LWT~SfvL~t~G~a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L~iYvls~~~ll~~ll~~~~~~~~~~~l~~~l~~~ 243 (284)
+||+.||+.+|+|.|.+++..+|.++|++.|+.-+.||++.|||+|.+||++ +++.+.+. |+|+.++++.+-.
T Consensus 449 ~L~slsfvCVT~~~A~Li~S~mY~~iDv~EW~~~~~P~~~~GMNAi~~YV~~--~vL~~~~~-W~~R~~~~~~H~~---- 521 (549)
T KOG4683|consen 449 NLWSLSFVCVTVSLALLILSLMYYFIDVREWSWSGYPFTECGMNAIVMYVGH--SVLHKMLP-WHWRIGEMNTHFM---- 521 (549)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHhhHHHhhhccCChhhhccchhHHHHhH--HHHHHhcc-hhhccCCCceeEE----
Confidence 9999999999999999999999999999998888899999999999999999 99998887 8999988765321
Q ss_pred hhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcceEEeC
Q 023314 244 AFLGVWRSRKVSTILYVIFVEILFWGLVTGILHRFGIYWKL 284 (284)
Q Consensus 244 l~~~~~~~~~~~sl~~al~~~~~~w~lia~~L~rkkIfiKl 284 (284)
...| ..+. +++|.+++.+++|.+||+|+
T Consensus 522 --l~~~--~t~~---------~L~W~~i~~~~~~~~~Y~~~ 549 (549)
T KOG4683|consen 522 --LLLE--ATWN---------TLVWVGIALYLDAQEFYYSV 549 (549)
T ss_pred --Eeee--hhhh---------hhhhhhhheeeeheeeEecC
Confidence 1111 1112 34699999999999999986
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=7.1e-45 Score=330.01 Aligned_cols=225 Identities=26% Similarity=0.375 Sum_probs=198.0
Q ss_pred chhhHHHHHHHHHccccCCCCccccCCCCcCCCccccccccccccCCCCCChhhhhhhhhcCCCcccCCcccccccccCC
Q 023314 2 AACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQ 81 (284)
Q Consensus 2 a~~l~~~~~~l~~~~~vP~~~~~~~g~g~~~~~~~~~~~c~~~~~~~~~~N~~~~iDr~~lg~~Hly~~p~~~~~~~~~~ 81 (284)
|++++++|+.++...|+|+.|. +..+|+..++|+...+++|+|.+.
T Consensus 144 aavLL~gYwl~lm~~p~P~~~l------------------------~~~Gn~g~~~d~l~i~~~hLy~~d---------- 189 (371)
T COG4299 144 AAVLLAGYWLFLMFTPHPAAPL------------------------GGIGNVGESADPLQILNDHLYSAD---------- 189 (371)
T ss_pred HHHHHHHHHHHHhhcCCCcccc------------------------ccccccccccchhhhhhhhhhccc----------
Confidence 7899999999999999998433 345789999999999999999851
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcchhhchHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcCCcCc
Q 023314 82 DSPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPL 161 (284)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~DPEGllstlpai~~~l~G~~aG~~L~~~~~~~~~l~~l~~~G~~ll~~G~~~~~~g~~PI 161 (284)
..|||||++||+|++++++.|.+++|.+++++.+.+...++++.|++++++|+.|... +||
T Consensus 190 -----------------G~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~~--fPi 250 (371)
T COG4299 190 -----------------GGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAGR--FPI 250 (371)
T ss_pred -----------------CCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhccccccc--ccc
Confidence 2489999999999999999999999999998877788888999999999999999964 999
Q ss_pred cccCCChhHHHHHhHHHHHHHHHHHHHHhhcCcccccccceecchhhHHHHHHhhhhhhhhhh-hcceec--CCCCCHHH
Q 023314 162 NKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFI-NGWYYG--DPHNTLPY 238 (284)
Q Consensus 162 nK~LWT~SfvL~t~G~a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L~iYvls~~~ll~~ll-~~~~~~--~~~~~l~~ 238 (284)
||++||||||++|+|++.++++.|+.++|.+..|+|.+||+++|.|||..|++| +++...+ ..++.. .|+.+ .+
T Consensus 251 ~KkLWTssyvl~t~G~~llllaac~~l~e~~~~kr~~~pf~i~GlNalalyvls--~L~~v~l~~~~g~getaps~~-~~ 327 (371)
T COG4299 251 SKKLWTSSYVLYTAGLGLLLLAACWVLAESPGGKRLLAPFTIPGLNALALYVLS--ILIKVWLLLDWGVGETAPSQS-IA 327 (371)
T ss_pred chhhcCCceeehhhhHHHHHHHHHHHHHcCcccCcCcCceeecCcchhHHHHHH--HHHHHHHhhccccccccCCcc-hh
Confidence 999999999999999999999999999999999999999999999999999999 8887743 323322 23334 68
Q ss_pred HHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcceEEeC
Q 023314 239 WIKKHAFLGVWRSRKVSTILYVIFVEILFWGLVTGILHRFGIYWKL 284 (284)
Q Consensus 239 ~l~~~l~~~~~~~~~~~sl~~al~~~~~~w~lia~~L~rkkIfiKl 284 (284)
|.+.+++++ ++++..+|++|++.+.+.+| +.+++|+||+|++|+
T Consensus 328 w~~~n~f~s-~~g~~~Gsll~aL~yvl~~W-l~~~~MaRrg~~~Kl 371 (371)
T COG4299 328 WSLLNMFRS-SFGPVGGSLLYALGYVLAVW-LGLAWMARRGIIWKL 371 (371)
T ss_pred HHHHHHHHH-hcCCCCchhHHHHHHHHHHH-HHHHHHHhcceeeeC
Confidence 999999865 57999999999999655555 789999999999996
No 3
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=98.59 E-value=3.5e-07 Score=76.71 Aligned_cols=118 Identities=19% Similarity=0.265 Sum_probs=94.6
Q ss_pred CCcchhhchHHHHHHHHHHHHHHHHHhccchh---------HHHHHHHHHHHHHHHHHHHhhhcCCcCccccCCChhHHH
Q 023314 102 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHL---------ARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVC 172 (284)
Q Consensus 102 DPEGllstlpai~~~l~G~~aG~~L~~~~~~~---------~~l~~l~~~G~~ll~~G~~~~~~g~~PInK~LWT~SfvL 172 (284)
+.||++|.+.-++-=++|+..|+.+.+.++.. ++..+++.+.+++.++-.+++.. ..|++.++...+||+
T Consensus 2 NrEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~vSRRlaNl~Yvl 80 (136)
T PF06423_consen 2 NREGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNSY-IEPVSRRLANLPYVL 80 (136)
T ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhHHhcchHHHH
Confidence 46999999999999999999999997655332 33345677777777777777533 589999999999999
Q ss_pred HHhHHHHHHHHHHHHHHhhcCccc-----ccccceecchhhHHHHHHhhhhhhhh
Q 023314 173 VTSGAAALVFSAIYALVDIWNLKY-----PFLPLAWIGMNAMLVYVMAAEGIFAG 222 (284)
Q Consensus 173 ~t~G~a~l~la~ly~liDv~~~~~-----~~~pf~~~G~N~L~iYvls~~~ll~~ 222 (284)
.+.+.....++.+..+-++....+ ....++.+.+|.|++|+++ .++..
T Consensus 81 wv~a~n~~~l~~~~~i~~~~~~~~~~~~~~~~l~~aiN~N~L~~FLla--NllTG 133 (136)
T PF06423_consen 81 WVLAFNTFFLALYLLIELLLFRPKASYSKTPCLLDAINRNGLFVFLLA--NLLTG 133 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHcccccHHHHHH--HHHHc
Confidence 999999998888777766654432 4567889999999999999 87764
No 4
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=97.43 E-value=0.0011 Score=56.51 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=50.4
Q ss_pred cCccccCCChhHHHHHhHHHHHHHHHHHHHHhhcCcccccccceecchhhHHHHHHhhhhhhhhh
Q 023314 159 IPLNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGF 223 (284)
Q Consensus 159 ~PInK~LWT~SfvL~t~G~a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L~iYvls~~~ll~~l 223 (284)
.+.+....+....+.....+....+++..+.+-++.++...||+..|+-|++.|+.+ .++...
T Consensus 45 ~~~~~~~~~~~~~~~~~~~a~~y~~l~~ll~~~~~~~~~~~~l~~~GrmaLT~Yi~q--sii~~~ 107 (163)
T PF04235_consen 45 SPPAAHLSSVLYMLGGPLLALGYVALLILLCQKRPRQRLLRPLAAVGRMALTNYILQ--SIIGTL 107 (163)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHhhHHHHHHHHH--HHHHHH
Confidence 345555556666666777888888899999998887778999999999999999999 776653
No 5
>PRK10835 hypothetical protein; Provisional
Probab=93.04 E-value=2.3 Score=41.31 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCcccccccceecchhhHHHHHHhhhhhhhh
Q 023314 183 SAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAG 222 (284)
Q Consensus 183 a~ly~liDv~~~~~~~~pf~~~G~N~L~iYvls~~~ll~~ 222 (284)
+++..+.+-++.+++.++|...|+-|++.|+.. .++..
T Consensus 277 ~~~~ll~~~~~~~~~~~~la~~GrmaLTnYl~Q--Sii~~ 314 (373)
T PRK10835 277 ALIYGFWPQLSRWRLTLAIACVGRMALTNYLLQ--TLICT 314 (373)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 334444444444567789999999999999999 77754
No 6
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.83 E-value=1 Score=43.63 Aligned_cols=64 Identities=16% Similarity=0.036 Sum_probs=42.6
Q ss_pred cCccccCCChhHHHHHhHHHHHHHHHHHHHHhhcCcccccccceecchhhHHHHHHhhhhhhhhhhh
Q 023314 159 IPLNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFIN 225 (284)
Q Consensus 159 ~PInK~LWT~SfvL~t~G~a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L~iYvls~~~ll~~ll~ 225 (284)
.|++|.-=++--++--.+++.++..++...-.-. .+++.+|+..+|+|+|.+|+.+ .++....+
T Consensus 259 ~~~dK~~L~~~Rllhflala~lv~~l~~~~~~~~-~~~~~~~l~~~Gr~SL~VF~~~--~vl~~~~~ 322 (358)
T PF10129_consen 259 YPFDKTDLGPLRLLHFLALAYLVAWLLPAGWRWL-RRRWLRPLILLGRHSLPVFCVG--VVLSLAGQ 322 (358)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHhccccHhH-hhhhhhHHHHHccCchHHHHHH--HHHHHHHH
Confidence 4578998888888766665554444333111111 1356789999999999999999 66654443
No 7
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=88.76 E-value=1.2 Score=39.46 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=18.9
Q ss_pred ccceecchhhHHHHHHhhhhhhhh
Q 023314 199 LPLAWIGMNAMLVYVMAAEGIFAG 222 (284)
Q Consensus 199 ~pf~~~G~N~L~iYvls~~~ll~~ 222 (284)
++++..|.++..+|+.| ..+..
T Consensus 284 ~~l~~lg~~S~~iYl~H--~~v~~ 305 (340)
T PF01757_consen 284 KILSFLGRYSYGIYLIH--FPVIF 305 (340)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHH
Confidence 68999999999999999 55554
No 8
>PF15345 TMEM51: Transmembrane protein 51
Probab=81.20 E-value=1.4 Score=40.33 Aligned_cols=57 Identities=26% Similarity=0.500 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhhhcCCcC----------------------ccccCCChhHHHHHhHHHHHHHHHHHHHHhhcCcc
Q 023314 139 WVTMGFALLIFGLTLHFTNAIP----------------------LNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLK 195 (284)
Q Consensus 139 l~~~G~~ll~~G~~~~~~g~~P----------------------InK~LWT~SfvL~t~G~a~l~la~ly~liDv~~~~ 195 (284)
+-++|+.++++|.++-.+.++| .+++--|..|||+-+|.++++|++|.-+=|-|+.+
T Consensus 9 L~AiG~Gml~LGiiM~vW~~VPg~~~~~~~~~~~~n~~~~~~~~~ksKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 9 LTAIGVGMLALGIIMIVWNLVPGFSSGNKPTPQGSNSTEPSDGNLKSKTFSVAYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred HHHHhHhHHHHhhHheeeeecccccCCCCCCCCCCCCcCCCCCcccceeEEEEEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5567888888888775432222 23345677899999999999999999998866543
No 9
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=79.35 E-value=33 Score=33.32 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=32.2
Q ss_pred HHHHhHHHHHHHHHHHHHHhhcCcccccccceecchhhHHHHHHhhhhhhhhhhh
Q 023314 171 VCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFIN 225 (284)
Q Consensus 171 vL~t~G~a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L~iYvls~~~ll~~ll~ 225 (284)
+....|+++..+..+...+|. ..+++++.|+|+|.+|.+| +.+...+.
T Consensus 239 ~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~lG~~TL~I~~lH--g~v~~~~~ 286 (343)
T COG3594 239 RALVLGLALNALVRFAAKIPQ-----LRKLVTKLGKNTLYIYLLH--GFVFKVLR 286 (343)
T ss_pred HHHHHHHHHHHHHHHHHhccH-----HHHHHHHHhhhhHHHHHHH--HHHHHHHH
Confidence 344445555555544444432 2478999999999999999 77776554
No 10
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=77.39 E-value=5.4 Score=38.84 Aligned_cols=161 Identities=19% Similarity=0.219 Sum_probs=92.6
Q ss_pred CCcchhhchHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHHHhHHHHH
Q 023314 102 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLAR-LKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAAL 180 (284)
Q Consensus 102 DPEGllstlpai~~~l~G~~aG~~L~~~~~~~~~-l~~l~~~G~~ll~~G~~~~~~g~~PInK~LWT~SfvL~t~G~a~l 180 (284)
+-||+.|++|=++.-+.|.-.|++..+.++.+++ +..+...-+..+.+-.+.++. -.. +.++....||+...-+-.+
T Consensus 266 NrEGI~sll~yisIfl~g~~tg~vvf~~kpTr~~~wk~~~~~~af~lciylVfnf~-s~s-sRRlaNlpfv~wi~~lh~f 343 (429)
T COG5062 266 NREGITSLLPYISIFLMGADTGKVVFKKKPTRKKAWKIIILYNAFFLCVYLVFNFY-STS-SRRLANLPFVMWIMLLHTF 343 (429)
T ss_pred chhhhhhcchhhhheeeecccceEEecCCCchHHHHHHHHHHHHHHHHHHHHHhhc-ccc-hhhhcCccHHHHHHHHHHH
Confidence 8899999999999999999999998766543332 233322212333344455542 123 8999999999988776654
Q ss_pred HHHHHHHHHhhcC--cccccccceecchhhHHHHHHhhhhhhhhhhhcceecCCCCCHHHHHHHHhhhhhccccchhHHH
Q 023314 181 VFSAIYALVDIWN--LKYPFLPLAWIGMNAMLVYVMAAEGIFAGFINGWYYGDPHNTLPYWIKKHAFLGVWRSRKVSTIL 258 (284)
Q Consensus 181 ~la~ly~liDv~~--~~~~~~pf~~~G~N~L~iYvls~~~ll~~ll~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~sl~ 258 (284)
- ...|-+.|-.- +.+-..-|+-.-+|-++++... .+.....+.- . +.+ .+. .....++.
T Consensus 344 ~-lt~y~lfd~ts~~yn~v~~~fes~n~n~llvfs~a--nVltg~vn~s---~----------kt~-ss~--~Shak~lt 404 (429)
T COG5062 344 H-LTVYELFDRTSKIYNLVMHRFESKNLNFLLVFSNA--NVLTGKVNSS---S----------KTM-SSC--SSHAKCLT 404 (429)
T ss_pred H-hheeeeeecccchhhhHHHHHHhcccchHHHHHHH--HHHhchhhhc---h----------hhh-ccc--cchhHHHH
Confidence 3 34456667422 1222334454555555555544 4433222110 0 011 110 12234555
Q ss_pred HHHHHHHHHHHHHHHHHHhcceEEeC
Q 023314 259 YVIFVEILFWGLVTGILHRFGIYWKL 284 (284)
Q Consensus 259 ~al~~~~~~w~lia~~L~rkkIfiKl 284 (284)
|-++++-+.. .+..++++|+|++|+
T Consensus 405 ~Lva~fsi~c-~i~s~la~k~i~~~l 429 (429)
T COG5062 405 YLVAVFSIPC-AINSKLAGKLIVSGL 429 (429)
T ss_pred HHHHHHHHHH-HHHHHHhhhhhcccC
Confidence 5555444445 589999999999875
No 11
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=70.38 E-value=7.8 Score=34.23 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=30.6
Q ss_pred CCCCcchhhchHHHHHHHHHHHHHHHHHhccchhHH
Q 023314 100 PFEPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLAR 135 (284)
Q Consensus 100 ~~DPEGllstlpai~~~l~G~~aG~~L~~~~~~~~~ 135 (284)
.+++||....+|-++..++|+.+|++..+.++++.+
T Consensus 159 ~~~~~~~~Pl~PW~~~~l~G~~~G~~~~~~~~~~~~ 194 (223)
T PF07786_consen 159 NFFSNGYFPLFPWLGFFLLGMALGRLFLRKGRRRFR 194 (223)
T ss_pred CCCcCCcCccHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 579999999999999999999999999877444333
No 12
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=50.33 E-value=1e+02 Score=29.34 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=18.7
Q ss_pred cccceecchhhHHHHHHhhhhhhhh
Q 023314 198 FLPLAWIGMNAMLVYVMAAEGIFAG 222 (284)
Q Consensus 198 ~~pf~~~G~N~L~iYvls~~~ll~~ 222 (284)
..+++.+|.++-.+|+.| ..+..
T Consensus 303 ~~~l~~lg~~Sy~iYL~H--~pv~~ 325 (375)
T PRK03854 303 SPRVTYLVNASLFIYLVH--HPLTL 325 (375)
T ss_pred cHHHHHhhhhhhHHHHHH--HHHHH
Confidence 456899999999999999 54443
No 13
>PF10658 DUF2484: Protein of unknown function (DUF2484); InterPro: IPR018919 A role of this family in UDP-N-acetylenolpyruvoylglucosamine reductase, as MurB, could not be confirmed.
Probab=47.39 E-value=37 Score=25.96 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhcCCcCccccCCChhHHHHHhHHHHH
Q 023314 141 TMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAAL 180 (284)
Q Consensus 141 ~~G~~ll~~G~~~~~~g~~PInK~LWT~SfvL~t~G~a~l 180 (284)
.++.+..+++-+... .|...+.|++.|+|+..|.-++
T Consensus 6 ila~lWvv~A~~~Am---LP~rd~hw~~a~~Lia~g~pLl 42 (77)
T PF10658_consen 6 ILACLWVVAANVVAM---LPSRDNHWRPAYVLIAAGIPLL 42 (77)
T ss_pred HHHHHHHHHHHHHHH---cCchhhcchhHHHHHHHHhhHh
Confidence 445555555555554 7888899999999999987664
No 14
>COG2311 Predicted membrane protein [Function unknown]
Probab=47.22 E-value=1.8e+02 Score=28.79 Aligned_cols=45 Identities=20% Similarity=0.069 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhcCcccccccceecchhhHHHHHHhhhhhhhhhh
Q 023314 178 AALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFI 224 (284)
Q Consensus 178 a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L~iYvls~~~ll~~ll 224 (284)
++...+++..+....+..+..++|...|+=|++.|++. +++..++
T Consensus 285 ~~gY~~li~ll~~~~~~~~~~~~~A~vGRmALTNYLlQ--Siv~T~i 329 (394)
T COG2311 285 ALGYASLVGLLWPKLRRGALLRAFAAVGRMALTNYLLQ--SIVCTTI 329 (394)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 33334445555554455557789999999999999999 8887643
No 15
>PF13828 DUF4190: Domain of unknown function (DUF4190)
Probab=46.46 E-value=45 Score=24.23 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=25.5
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHh
Q 023314 106 LLSSVSSILSTIIGVHFGHVIIHT-KGHLARLKQWVTMGFALLIFGLTL 153 (284)
Q Consensus 106 llstlpai~~~l~G~~aG~~L~~~-~~~~~~l~~l~~~G~~ll~~G~~~ 153 (284)
++|-+....+...|+..|++=+++ ++..++=+.+...|+++-.++.+.
T Consensus 10 i~~~~~~~~~~i~aiilG~ial~~i~r~~~~G~g~A~aGivlG~i~~~~ 58 (62)
T PF13828_consen 10 ILGLFLCGLLGIVAIILGHIALRQIRRSGQRGRGMAIAGIVLGYIGIVL 58 (62)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 344333334566666677664332 222344456677777766665543
No 16
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=39.45 E-value=77 Score=32.95 Aligned_cols=15 Identities=27% Similarity=0.631 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhh
Q 023314 140 VTMGFALLIFGLTLH 154 (284)
Q Consensus 140 ~~~G~~ll~~G~~~~ 154 (284)
+.+|+..++.|++.+
T Consensus 397 ~~~gi~sii~G~lyG 411 (646)
T PRK05771 397 IYLGISTIIWGLLTG 411 (646)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666655
No 17
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=37.56 E-value=27 Score=31.93 Aligned_cols=48 Identities=23% Similarity=0.339 Sum_probs=37.0
Q ss_pred ccccCCChhHHHHHhHHHHHHHHHHHHHHhhcCcccccccceecchhhH
Q 023314 161 LNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAM 209 (284)
Q Consensus 161 InK~LWT~SfvL~t~G~a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L 209 (284)
=+|+.||-+.+.++.||+.+++. .|-+...++.++...|+++.|..|=
T Consensus 63 ~~k~~~~~~~i~lv~~W~v~~fL-~y~i~~~~~~~~~fDPyEILGl~pg 110 (230)
T KOG0721|consen 63 SPKSISTKRKVFLVVGWAVIAFL-IYKIMNSRRERQKFDPYEILGLDPG 110 (230)
T ss_pred CcccchhHHHHHHHHHHHHHHHH-HHHHhhhhHHhhcCCcHHhhCCCCC
Confidence 46799999999999999986554 4555555555667889999998763
No 18
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=34.81 E-value=3e+02 Score=28.28 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=36.3
Q ss_pred ccccCCC--hhHHHHHhHHHHHHHHHHHHHHhhcCcccccccceecchhhHHHHHHhhhhhhh
Q 023314 161 LNKQLYT--LSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFA 221 (284)
Q Consensus 161 InK~LWT--~SfvL~t~G~a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L~iYvls~~~ll~ 221 (284)
-..++|- .+||++.+...+++=.+-.-+......+ ..=-+||.|..++.++. .++.
T Consensus 349 ~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~---~~aLvFGiNtfvAl~LQ--tilT 406 (511)
T TIGR00806 349 QSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKE---LCALVFGINTFVATALK--TIIT 406 (511)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ceEEEEecHHHHHHHHH--HheE
Confidence 4556664 6788888877776555444444332222 23478999999999988 5554
No 19
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=32.50 E-value=1.6e+02 Score=23.52 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=17.5
Q ss_pred CCcchhhchHH--HHHHHHHHHHHHHHHhc
Q 023314 102 EPEGLLSSVSS--ILSTIIGVHFGHVIIHT 129 (284)
Q Consensus 102 DPEGllstlpa--i~~~l~G~~aG~~L~~~ 129 (284)
.-=|++|++.. ++.+++|+..|++|-+.
T Consensus 40 ~~l~~~g~IG~~~v~pil~G~~lG~WLD~~ 69 (100)
T TIGR02230 40 EGLGMFGLIGWSVAIPTLLGVAVGIWLDRH 69 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33356666543 34677788888888544
No 20
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=32.11 E-value=2.9e+02 Score=27.51 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=30.6
Q ss_pred ccccCCC--hhHHHHHhHHHHHHHHHHHHHHhhcCcccccccceecchhhHHHHHHhhhhhhh
Q 023314 161 LNKQLYT--LSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFA 221 (284)
Q Consensus 161 InK~LWT--~SfvL~t~G~a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L~iYvls~~~ll~ 221 (284)
..+++|- .+|+++-+...+++=.+.+-+.--...+ ..=-+||.|+.++.++. .++.
T Consensus 336 ~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e---~yaLVFGiNtf~Al~LQ--tilT 393 (412)
T PF01770_consen 336 FTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEE---RYALVFGINTFVALVLQ--TILT 393 (412)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---ceeeeeeeHHHHHHHHH--HheE
Confidence 3444442 4566665555444333333333211222 34478999999999888 5544
No 21
>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=30.96 E-value=2.9e+02 Score=22.36 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=42.6
Q ss_pred CCCcchhhchHHHHHHHHHHHHHHHHHh-ccc----hhHHH-HH-HHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHH
Q 023314 101 FEPEGLLSSVSSILSTIIGVHFGHVIIH-TKG----HLARL-KQ-WVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCV 173 (284)
Q Consensus 101 ~DPEGllstlpai~~~l~G~~aG~~L~~-~~~----~~~~l-~~-l~~~G~~ll~~G~~~~~~g~~PInK~LWT~SfvL~ 173 (284)
.+|.|++.|. .=-++|..++..+.. ++. ..++. .. ...| +.-..+|++++.. .+...=..||+++
T Consensus 24 ~~~~~~l~Ta---~PFl~Gw~~~~~~~~~~~~~~~~~~~~~~~~g~~~W-~~a~~vG~~LR~~----~~~~~~~~~FiiV 95 (112)
T PF11255_consen 24 LSPAGVLRTA---WPFLVGWLLGWPLLGAYRRDARGSPGRAWPTGVVVW-LVAVPVGMALRAL----LFGGGPAWSFIIV 95 (112)
T ss_pred ccHHHHHHHH---HHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH-HHHHHHHHHHHHH----HhCCCCCcchHHH
Confidence 5777777765 333455555555432 211 12222 21 1222 2335678887752 4556667899999
Q ss_pred HhHHHHHHHHH
Q 023314 174 TSGAAALVFSA 184 (284)
Q Consensus 174 t~G~a~l~la~ 184 (284)
+.+...+++..
T Consensus 96 a~~~~~vlL~g 106 (112)
T PF11255_consen 96 ALVFLAVLLLG 106 (112)
T ss_pred HHHHHHHHHHH
Confidence 99988876653
No 22
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=28.85 E-value=3.5e+02 Score=26.60 Aligned_cols=108 Identities=11% Similarity=0.023 Sum_probs=58.6
Q ss_pred CcchhhchHHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHHHHh-----hhcCCcCccccCC--ChhHHH
Q 023314 103 PEGLLSSVSSILSTIIGVHFGHVIIHTKG---HLARLKQWVTMGFALLIFGLTL-----HFTNAIPLNKQLY--TLSYVC 172 (284)
Q Consensus 103 PEGllstlpai~~~l~G~~aG~~L~~~~~---~~~~l~~l~~~G~~ll~~G~~~-----~~~g~~PInK~LW--T~SfvL 172 (284)
|-+.+.+++++..++++-...++..+.++ +.+...+ +..|.++..+|++. ... .-+...+.| -+.+++
T Consensus 313 p~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k-~~~G~~l~~~~~~~~~~~~~~~-~~~~~~s~~~~i~~~~~ 390 (475)
T TIGR00924 313 PVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLK-FTLGMLFCGASFLTFAASIWFA-DAGGLTSPWFMVLIYLF 390 (475)
T ss_pred CHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHhhc-CCCCccCHHHHHHHHHH
Confidence 45678889999888888887765432211 1111111 23333333333322 111 011223444 777888
Q ss_pred HHhHHHHHHHHHHHHHHhhcCcccccccceecchhhHHHHHHh
Q 023314 173 VTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMA 215 (284)
Q Consensus 173 ~t~G~a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L~iYvls 215 (284)
++.|-.+..=...-++-|.-....-+ +++|.+.+..++.+
T Consensus 391 ~~~ge~~~~p~~~~~~~~~aP~~~~g---~~~g~~~l~~~~g~ 430 (475)
T TIGR00924 391 QTLGELMISPLGLSWWTKIAPQRLMG---QMLGMWFLAQAMGS 430 (475)
T ss_pred HHHHHHHHhHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHH
Confidence 88886666655665665553221112 67788888777766
No 23
>KOG3700 consensus Predicted acyltransferase [General function prediction only]
Probab=28.53 E-value=6.6e+02 Score=26.80 Aligned_cols=104 Identities=15% Similarity=0.122 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhccchhHHHHH---HHHHHHHHHHHHHHhhhcCCcCccc-cCCCh----hHH-HHHhHHHHHHHHHH
Q 023314 115 STIIGVHFGHVIIHTKGHLARLKQ---WVTMGFALLIFGLTLHFTNAIPLNK-QLYTL----SYV-CVTSGAAALVFSAI 185 (284)
Q Consensus 115 ~~l~G~~aG~~L~~~~~~~~~l~~---l~~~G~~ll~~G~~~~~~g~~PInK-~LWT~----Sfv-L~t~G~a~l~la~l 185 (284)
.=++|.+.|-++.+.+..+-|+.+ +.+|-+.+..+ +.+..+..|..| +.|+. .|. +-..++++.+--+.
T Consensus 503 pyliG~l~GY~l~~~~~~~~~ls~~~~~~~W~~al~~~--~~~lf~~y~y~~~~~~~~~~~a~y~~~~R~~W~lal~wvI 580 (705)
T KOG3700|consen 503 PYLIGILFGYFLATYRGRKIRLSWLLVTIGWIVALVLI--ATCLFGLYPYSKGLAWSLFSEALYYAFSRIAWSLALSWVI 580 (705)
T ss_pred hHHHHHHHHHhhhcccCccccCCHHHHHHHHHHHHHHH--HHHhhcccccccccchhHhhhHHhheeHHHHHHHHHHHHH
Confidence 357899999999887633323322 22222222111 111111234433 33443 333 44555555444444
Q ss_pred HHHHhhcCcc--c--ccccceecchhhHHHHHHhhhhhhhh
Q 023314 186 YALVDIWNLK--Y--PFLPLAWIGMNAMLVYVMAAEGIFAG 222 (284)
Q Consensus 186 y~liDv~~~~--~--~~~pf~~~G~N~L~iYvls~~~ll~~ 222 (284)
+.--+.++.. + -..+++++|+=+-.+|+.| .++..
T Consensus 581 ~a~~~g~gg~i~~fls~p~wqplsrLSy~aYlvH--~~v~~ 619 (705)
T KOG3700|consen 581 FACHTGYGGPINAFLSHPLWQPLSRLSYCAYLVH--MPVLY 619 (705)
T ss_pred HHhhCCCccchhhhccCcccceehhhhhHHHHHH--HHHHH
Confidence 4444444411 0 1257889999999999999 55443
No 24
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=25.93 E-value=4e+02 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHhhcCc
Q 023314 175 SGAAALVFSAIYALVDIWNL 194 (284)
Q Consensus 175 ~G~a~l~la~ly~liDv~~~ 194 (284)
-+...+++...|.+.|....
T Consensus 155 ~~~~g~~lf~~~l~~Dtq~i 174 (212)
T cd06181 155 ISALGVLLFSGYILYDTQLI 174 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455566777787654
No 25
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=25.68 E-value=3.8e+02 Score=22.81 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=10.4
Q ss_pred ccCCChhHHHHHhHHHHH
Q 023314 163 KQLYTLSYVCVTSGAAAL 180 (284)
Q Consensus 163 K~LWT~SfvL~t~G~a~l 180 (284)
+.++...+.+..+..+.+
T Consensus 160 ~~~~~~~~~~~~g~ls~i 177 (194)
T PF07698_consen 160 EILSSLIFAFINGILSGI 177 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666666543
No 26
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=24.40 E-value=2.9e+02 Score=20.42 Aligned_cols=24 Identities=17% Similarity=-0.027 Sum_probs=16.7
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhc
Q 023314 106 LLSSVSSILSTIIGVHFGHVIIHT 129 (284)
Q Consensus 106 llstlpai~~~l~G~~aG~~L~~~ 129 (284)
++.+..++.+.+.+...|++..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~g~~~d~~ 25 (141)
T TIGR00880 2 LLLAGYALGQLIYSPLSGLLTDRF 25 (141)
T ss_pred EEEEeehhHHHHHHhhHHHHHhhc
Confidence 455666777777788888777654
No 27
>COG1967 Predicted membrane protein [Function unknown]
Probab=24.32 E-value=2.1e+02 Score=26.87 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHHHhHHHHHHHHHHHHHHhhcCcccccccceecchhhHHHH
Q 023314 138 QWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVY 212 (284)
Q Consensus 138 ~l~~~G~~ll~~G~~~~~~g~~PInK~LWT~SfvL~t~G~a~l~la~ly~liDv~~~~~~~~pf~~~G~N~L~iY 212 (284)
..+++|.++....+.. .-.|+.-|++.+...+-|.+..+-+++|.+ .|+.++..+ =+|...+|
T Consensus 119 l~ag~G~Vla~~~l~~-----~~~~~~~~~~~~~~~~ig~~~~~tav~y~~--~r~~~~~~~-----~~~l~~~~ 181 (271)
T COG1967 119 LLAGWGLVLAAVALLL-----LLHNAPTFNLYVLVLLIGVATVLTAVFYLL--ARPLPSLTS-----VANLYVVL 181 (271)
T ss_pred EeehhhHHHHHHHHHH-----HHhcCCccchhHHHHHHHHHHHHHHHHHHH--Hccchhhhc-----cccHHHHH
Confidence 4578888887766664 337999999999999999998888888887 455443322 44555554
No 28
>PF12832 MFS_1_like: MFS_1 like family
Probab=23.82 E-value=1.6e+02 Score=21.74 Aligned_cols=35 Identities=14% Similarity=0.291 Sum_probs=28.1
Q ss_pred CCCCc--chhhchHHHHHHHHHHHHHHHHHhccchhH
Q 023314 100 PFEPE--GLLSSVSSILSTIIGVHFGHVIIHTKGHLA 134 (284)
Q Consensus 100 ~~DPE--Gllstlpai~~~l~G~~aG~~L~~~~~~~~ 134 (284)
.+||+ |+++++.-+...+..-+.|.+..+.++++.
T Consensus 31 Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~ 67 (77)
T PF12832_consen 31 GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV 67 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence 45665 999999999999999999998887765433
No 29
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=23.52 E-value=1.5e+02 Score=29.41 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=24.3
Q ss_pred CCCcchhhchHHHHHHHHHHHHHHHHHhcc
Q 023314 101 FEPEGLLSSVSSILSTIIGVHFGHVIIHTK 130 (284)
Q Consensus 101 ~DPEGllstlpai~~~l~G~~aG~~L~~~~ 130 (284)
+---|+|+|+|-++-.++...+.++=|+..
T Consensus 46 ~s~aGlLTtLPll~fg~~ap~a~~Lar~~g 75 (395)
T COG2807 46 FSVAGLLTTLPLLAFGLFAPAAPRLARRFG 75 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 345689999999999999998888776654
No 30
>PF05072 Herpes_UL43: Herpesvirus UL43 protein; InterPro: IPR007764 UL43 genes are expressed with true-late (gamma2) kinetics and have been identified as a virion tegument component []. Studies suggest that the N-terminal sequences target UL43 to protein aggregates and that C-terminal sequences are important for incorporation into particles.; GO: 0016020 membrane, 0019033 viral tegument
Probab=23.35 E-value=4e+02 Score=26.24 Aligned_cols=68 Identities=7% Similarity=0.025 Sum_probs=41.7
Q ss_pred CCCCcchhhchHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhhhcCCcCcc--ccCCChh
Q 023314 100 PFEPEGLLSSVSSILSTIIGVHFGHVIIHTKGH-LARLKQWVTMGFALLIFGLTLHFTNAIPLN--KQLYTLS 169 (284)
Q Consensus 100 ~~DPEGllstlpai~~~l~G~~aG~~L~~~~~~-~~~l~~l~~~G~~ll~~G~~~~~~g~~PIn--K~LWT~S 169 (284)
.+-+++..+.+|.+.....-.+.+..=.-...+ .+....++..++.--+++.+.+.. .+.+ |+++++-
T Consensus 232 ~~~~~~~~i~~plv~~~~tp~iwa~~~~~~~~~~~~~~~t~~~~~i~Gh~va~~~~l~--~~~~~~~~l~~~l 302 (373)
T PF05072_consen 232 GFKAHPEHIWLPLVTFLATPAIWAVSRRMGRGNKWQTPRTWLLVFIGGHLVAALLELC--QRYSYRRDLSRPL 302 (373)
T ss_pred ccccCccccHHHHHHHHHHHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHHHH
Confidence 456777788888887666666665432222222 233345667777777777777754 5555 6777665
No 31
>PTZ00249 variable surface protein Vir28; Provisional
Probab=23.12 E-value=60 Score=33.08 Aligned_cols=34 Identities=12% Similarity=0.275 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchhhchHHHHHHHHH
Q 023314 83 SPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIG 119 (284)
Q Consensus 83 ~~~~g~~~~~~~~~~~~~~DPEGllstlpai~~~l~G 119 (284)
+-.+|..|+++- +.+||+||+++++...++-.+|
T Consensus 402 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~ 435 (516)
T PTZ00249 402 FLQEGDQPAGSM---QSTFDTGTIMGTIKGAVSNVLE 435 (516)
T ss_pred hhhhcCCCcccc---cccccchhhHHhhhHHHHHhhh
Confidence 345666665553 5789999999999887665544
No 32
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=22.37 E-value=35 Score=32.56 Aligned_cols=44 Identities=27% Similarity=0.477 Sum_probs=24.9
Q ss_pred CChhhhhhhhhcCCCcccCCcccccccccCCCCCCCCCCCCCCCCCCCCCCCCcchhhch
Q 023314 51 CNAVGYIDRKVLGINHMYHHPAWRRSKACTQDSPFEGPLRKDAPSWCHAPFEPEGLLSSV 110 (284)
Q Consensus 51 ~N~~~~iDr~~lg~~Hly~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DPEGllstl 110 (284)
+=+.+-.|+.+- ||.- |.+.|.-.-...++ . ..+||||||+=.+
T Consensus 114 ~FlS~S~D~tvr----LWDl----R~~~cqg~l~~~~~------p--i~AfDp~GLifA~ 157 (311)
T KOG1446|consen 114 TFLSSSLDKTVR----LWDL----RVKKCQGLLNLSGR------P--IAAFDPEGLIFAL 157 (311)
T ss_pred eEEecccCCeEE----eeEe----cCCCCceEEecCCC------c--ceeECCCCcEEEE
Confidence 345666676664 4542 35566433333332 1 3689999997554
No 33
>PRK13499 rhamnose-proton symporter; Provisional
Probab=22.16 E-value=1.1e+02 Score=29.71 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=20.5
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHh
Q 023314 125 VIIHTKGHLARLKQWVTMGFALLIFGLTL 153 (284)
Q Consensus 125 ~L~~~~~~~~~l~~l~~~G~~ll~~G~~~ 153 (284)
++++.|+..+|-+++...|++++++|..+
T Consensus 310 ~lkE~K~a~~k~~~~l~~G~vliI~g~~l 338 (345)
T PRK13499 310 VLKEWKGASRRPVRVLSLGCVVIILAANI 338 (345)
T ss_pred hhhhccCCCccchhHHHHHHHHHHHHHHH
Confidence 36666665566677778888888777765
No 34
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=21.57 E-value=2.2e+02 Score=24.88 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=29.2
Q ss_pred CCcchhhchHHHHHHHHHHHHHHHHHhcc-c--hhHHHH---HHHHHHHHHHHHHHHh
Q 023314 102 EPEGLLSSVSSILSTIIGVHFGHVIIHTK-G--HLARLK---QWVTMGFALLIFGLTL 153 (284)
Q Consensus 102 DPEGllstlpai~~~l~G~~aG~~L~~~~-~--~~~~l~---~l~~~G~~ll~~G~~~ 153 (284)
||-++..++-=++..+++......++.++ + .+++.. ..+..|+++...|+.+
T Consensus 112 ~~~~~~~~~~Pi~~~~~i~~~~w~~r~~~~~~~~~~~~~~~~~~l~~g~~~~~~Gl~~ 169 (186)
T PF12036_consen 112 DRWSLWNTIGPILIGLLILLVSWLYRCRRRRRCYPPSWRRWLFYLLPGIIFFILGLDL 169 (186)
T ss_pred CcccchhhHHHHHHHHHHHHHHHheecccCCccCChHHHHHHHHHHHHHHHHHHHHhH
Confidence 66666777666666777777766665222 1 122322 2355666666666654
No 35
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=21.15 E-value=4.6e+02 Score=26.28 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCCCc--chhhchHHHHHHHHHHHHHHHHH
Q 023314 100 PFEPE--GLLSSVSSILSTIIGVHFGHVII 127 (284)
Q Consensus 100 ~~DPE--Gllstlpai~~~l~G~~aG~~L~ 127 (284)
.||-+ |++|.+|-+++....+.+|.+--
T Consensus 290 ~f~v~~~G~~salP~l~~~~~k~~~g~lsD 319 (466)
T KOG2532|consen 290 GFDVRETGFLSALPFLAMAIVKFVAGQLSD 319 (466)
T ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46765 99999999999999999998864
No 36
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=21.00 E-value=7.4e+02 Score=25.60 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=45.0
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhccchhHHHHHH--HHHHHHHHHHHHHhhhcCCcCccccCCCh--hHHHHHhHHHHHH
Q 023314 106 LLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQW--VTMGFALLIFGLTLHFTNAIPLNKQLYTL--SYVCVTSGAAALV 181 (284)
Q Consensus 106 llstlpai~~~l~G~~aG~~L~~~~~~~~~l~~l--~~~G~~ll~~G~~~~~~g~~PInK~LWT~--SfvL~t~G~a~l~ 181 (284)
++-.+|+.+ .++|...-+.+.+.+....|+..+ ...|+..+++-...+.. .+..+.++.+ ++-++.+-.++..
T Consensus 318 iLP~~pplA-lL~A~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~~~ 394 (552)
T PRK13279 318 ILPCFAPLA-ILMAHYAVDCAKNGNPRALRINGWINLAFGLLGLIALLVVSPW--GPLKHPVYQPNETYKVFLAWIAFLG 394 (552)
T ss_pred HHHHHHHHH-HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccCCccCcchHHHHHHHHHHHHH
Confidence 455555553 222333333333323333344443 45566555554555553 6677777875 4455566666666
Q ss_pred HHHHHHHHhhcCcccc
Q 023314 182 FSAIYALVDIWNLKYP 197 (284)
Q Consensus 182 la~ly~liDv~~~~~~ 197 (284)
.+++-++.-.++.+.|
T Consensus 395 w~~~~~~~~~~~~~~~ 410 (552)
T PRK13279 395 WAFFGWLSLRNPLKRW 410 (552)
T ss_pred HHHHHHHHHhccchhh
Confidence 6666555544444444
No 37
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=20.89 E-value=4.1e+02 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=22.9
Q ss_pred chhhchHHHHHHHHHHHHHHHHHhcc
Q 023314 105 GLLSSVSSILSTIIGVHFGHVIIHTK 130 (284)
Q Consensus 105 Gllstlpai~~~l~G~~aG~~L~~~~ 130 (284)
|++.++..+...+....+|++..+..
T Consensus 54 g~~~~~~~~~~~i~~~~~G~l~Dr~g 79 (399)
T PRK05122 54 GLVISLQYLATLLSRPHAGRYADTLG 79 (399)
T ss_pred HHHHHHHHHHHHHhchhhHhHHhccC
Confidence 88999999999999999999988764
No 38
>PF05628 Borrelia_P13: Borrelia membrane protein P13; InterPro: IPR008420 Lyme borreliosis (or Lyme's disease) is one of the most common tick-borne diseases. It is caused by bacteria from the genus Borrelia. This family consists of P13 proteins from Borrelia species. P13 is a 13 kDa integral membrane protein which is post-translationally processed at both ends and modified by an unknown mechanism [].
Probab=20.32 E-value=1.9e+02 Score=24.38 Aligned_cols=78 Identities=14% Similarity=0.181 Sum_probs=50.2
Q ss_pred CCcchhhchHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhcCCcCccccCCChhHHHHHhHHHHH
Q 023314 102 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAAL 180 (284)
Q Consensus 102 DPEGllstlpai~~~l~G~~aG~~L~~~~~~~~~l~~l~~~G~~ll~~G~~~~~~g~~PInK~LWT~SfvL~t~G~a~l 180 (284)
|-|-.-...|...+.++|.-.|.+.+.---........-+.|..++..|...+.. ---...+.|+.+.++...|...+
T Consensus 6 e~~k~~~l~P~LLNlFlgfGIGSFvqGD~igGg~~lg~~~lg~~L~~tG~~~~~~-~~~~~~~~~~~g~~l~~iG~~tm 83 (135)
T PF05628_consen 6 ESEKQTILVPFLLNLFLGFGIGSFVQGDYIGGGAVLGFDVLGGILILTGYIININ-ANSKDDKMSITGSILMGIGGLTM 83 (135)
T ss_pred hhhccchhHHHHHHHHHhcCcchhhccceeCchhhhhHHHHhHHHHHhhheeecc-cccccccccchhHHHHHHhHHHH
Confidence 3344445699999999999999998753322223344456777778888876431 01123346888888887776654
Done!