Query 023314
Match_columns 284
No_of_seqs 143 out of 501
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_J Photosystem 1 reaction 24.0 64 0.0022 20.8 2.8 23 106-128 7-29 (41)
2 4aps_A DI-OR tripeptide H+ sym 21.9 2.7E+02 0.0093 24.9 8.0 52 102-153 319-370 (491)
3 3p5n_A RIBU, riboflavin uptake 21.3 2.1E+02 0.0071 23.6 6.5 52 102-155 81-132 (189)
4 3vhs_A ATPase wrnip1; zinc fin 18.6 20 0.00068 20.9 -0.4 25 36-60 4-28 (29)
5 2ks1_B Epidermal growth factor 16.9 1.6E+02 0.0054 19.1 3.6 15 267-281 27-41 (44)
6 1pw4_A Glycerol-3-phosphate tr 14.9 4E+02 0.014 23.2 7.2 27 104-130 64-90 (451)
7 2xut_A Proton/peptide symporte 14.5 3.4E+02 0.011 24.6 6.8 25 105-129 57-81 (524)
8 4ev6_A Magnesium transport pro 13.6 6.6E+02 0.023 22.2 8.4 53 133-187 276-332 (339)
9 3o7q_A L-fucose-proton symport 12.3 4.5E+02 0.015 22.8 6.7 44 105-153 64-107 (438)
10 2k1k_A Ephrin type-A receptor 11.4 2.1E+02 0.0073 17.7 3.0 10 270-279 29-38 (38)
No 1
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=24.04 E-value=64 Score=20.80 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=20.1
Q ss_pred hhhchHHHHHHHHHHHHHHHHHh
Q 023314 106 LLSSVSSILSTIIGVHFGHVIIH 128 (284)
Q Consensus 106 llstlpai~~~l~G~~aG~~L~~ 128 (284)
-|||-|-+++.-+++.||.++.-
T Consensus 7 yLstAPVla~~w~~~tAg~lIEi 29 (41)
T 1jb0_J 7 YLSTAPVLAAIWMTITAGILIEF 29 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHH
Confidence 48999999999999999988743
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=21.86 E-value=2.7e+02 Score=24.93 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=32.5
Q ss_pred CCcchhhchHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHh
Q 023314 102 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTL 153 (284)
Q Consensus 102 DPEGllstlpai~~~l~G~~aG~~L~~~~~~~~~l~~l~~~G~~ll~~G~~~ 153 (284)
.+.|++.++.++...+.+...|++..+..+++....+.+..|.++..++.++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 319 FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence 4568889999999999899999877654332222223344555555555543
No 3
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=21.35 E-value=2.1e+02 Score=23.59 Aligned_cols=52 Identities=8% Similarity=0.140 Sum_probs=24.7
Q ss_pred CCcchhhchHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhh
Q 023314 102 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHF 155 (284)
Q Consensus 102 DPEGllstlpai~~~l~G~~aG~~L~~~~~~~~~l~~l~~~G~~ll~~G~~~~~ 155 (284)
+|-|.+.++ ++....|+.+|.+.++.++.++.+...+...+...+.+.+++.
T Consensus 81 ~~~g~~~~~--l~~~~~g~~~~~~y~k~~~~~~~~~~~i~G~~~~~i~~~~~n~ 132 (189)
T 3p5n_A 81 DPVGPFANF--LAGASFLLTAYAIYKNKRSTKSLITGLIIATIVMTIVLSILNY 132 (189)
T ss_dssp CSSHHHHHH--HHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544443 3446777777776655433222222222222334455555554
No 4
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=18.63 E-value=20 Score=20.93 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.6
Q ss_pred cccccccccccCCCCCChhhhhhhh
Q 023314 36 VFNVTCGVRAKLNPPCNAVGYIDRK 60 (284)
Q Consensus 36 ~~~~~c~~~~~~~~~~N~~~~iDr~ 60 (284)
.|.+.|.+....-|...+.+.+||-
T Consensus 4 ef~vqcpvcqq~mpaahin~hldrc 28 (29)
T 3vhs_A 4 EFQVQCPVCQQMMPAAHINSHLDRC 28 (29)
T ss_dssp -CEEECTTTCCEEEGGGHHHHHHHH
T ss_pred ceeeeChHHHHhCcHHHHHHHHhcc
Confidence 3568899888888888888888884
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=16.86 E-value=1.6e+02 Score=19.07 Aligned_cols=15 Identities=13% Similarity=-0.159 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhcceE
Q 023314 267 FWGLVTGILHRFGIY 281 (284)
Q Consensus 267 ~w~lia~~L~rkkIf 281 (284)
+-.++.+++.||++.
T Consensus 27 i~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 27 VALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhhhHhh
Confidence 333445667777764
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=14.90 E-value=4e+02 Score=23.24 Aligned_cols=27 Identities=22% Similarity=0.080 Sum_probs=22.7
Q ss_pred cchhhchHHHHHHHHHHHHHHHHHhcc
Q 023314 104 EGLLSSVSSILSTIIGVHFGHVIIHTK 130 (284)
Q Consensus 104 EGllstlpai~~~l~G~~aG~~L~~~~ 130 (284)
-|++.++..+...+.....|.+..+..
T Consensus 64 ~g~~~~~~~~~~~~~~~~~G~l~dr~g 90 (451)
T 1pw4_A 64 LGFALSGISIAYGFSKFIMGSVSDRSN 90 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcC
Confidence 488999999999998999998887664
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=14.47 E-value=3.4e+02 Score=24.63 Aligned_cols=25 Identities=8% Similarity=-0.218 Sum_probs=20.5
Q ss_pred chhhchHHHHHHHHHHHHHHHHHhc
Q 023314 105 GLLSSVSSILSTIIGVHFGHVIIHT 129 (284)
Q Consensus 105 Gllstlpai~~~l~G~~aG~~L~~~ 129 (284)
|++.++..+...+.....|++..+.
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~dr~ 81 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIADRF 81 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888887665
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=13.63 E-value=6.6e+02 Score=22.18 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcC----CcCccccCCChhHHHHHhHHHHHHHHHHHH
Q 023314 133 LARLKQWVTMGFALLIFGLTLHFTN----AIPLNKQLYTLSYVCVTSGAAALVFSAIYA 187 (284)
Q Consensus 133 ~~~l~~l~~~G~~ll~~G~~~~~~g----~~PInK~LWT~SfvL~t~G~a~l~la~ly~ 187 (284)
++.++.+.+++++++...++-+.+| .+|--+ |.-.|..+.+.+..+..+..++
T Consensus 276 N~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~--~~~gy~~~l~~m~~~~~~~~~~ 332 (339)
T 4ev6_A 276 NQIMKILTMVTTIFAVPMWITGIYGMNFSYLPLAN--NPQGFWLVMALMVVIIMIFVYI 332 (339)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSS--CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCcc--CchHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777666666555431 345443 5667776666555544444433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=12.26 E-value=4.5e+02 Score=22.81 Aligned_cols=44 Identities=23% Similarity=0.233 Sum_probs=30.1
Q ss_pred chhhchHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHh
Q 023314 105 GLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTL 153 (284)
Q Consensus 105 Gllstlpai~~~l~G~~aG~~L~~~~~~~~~l~~l~~~G~~ll~~G~~~ 153 (284)
|++.++..+...+.....|++..+..+ + +.+..|.++..++.+.
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~dr~g~--r---~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILMKKLSY--K---AGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSCH--H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcc--h---HHHHHHHHHHHHHHHH
Confidence 889999999999999999998876642 2 2344444444444444
No 10
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=11.36 E-value=2.1e+02 Score=17.72 Aligned_cols=10 Identities=10% Similarity=-0.174 Sum_probs=7.1
Q ss_pred HHHHHHHhcc
Q 023314 270 LVTGILHRFG 279 (284)
Q Consensus 270 lia~~L~rkk 279 (284)
.++++++|||
T Consensus 29 ~l~~~~~rrr 38 (38)
T 2k1k_A 29 GILVFRSRRA 38 (38)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHeecC
Confidence 4567788876
Done!