Query 023314
Match_columns 284
No_of_seqs 143 out of 501
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 04:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023314.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023314hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 34.0 16 0.0012 22.0 2.8 22 106-127 7-28 (41)
2 d1v54c_ f.25.1.1 (C:) Mitochon 23.9 1.7E+02 0.012 23.4 9.6 75 100-175 121-200 (259)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 18.9 2.1E+02 0.015 22.6 12.1 27 105-131 288-314 (447)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 17.8 1.8E+02 0.013 23.0 7.8 27 104-130 61-87 (447)
5 d1mxga1 b.71.1.1 (A:362-435) B 11.5 13 0.00094 24.5 -1.4 21 49-69 31-51 (74)
6 d1pv7a_ f.38.1.2 (A:) Lactose 10.9 1.5E+02 0.011 22.7 5.0 27 105-131 46-72 (417)
7 d1knya2 d.218.1.1 (A:1-125) Ka 7.4 41 0.003 24.4 -0.1 12 99-110 108-119 (125)
8 d2r6gg1 f.58.1.1 (G:7-296) Mal 6.9 2.2E+02 0.016 22.3 4.4 31 106-136 84-114 (290)
9 d1m56c_ f.25.1.1 (C:) Bacteria 5.6 6.1E+02 0.044 19.7 10.0 18 158-175 189-206 (265)
10 d1ctda_ a.39.1.5 (A:) Troponin 4.9 72 0.0053 18.0 0.0 14 50-63 14-27 (34)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=34.01 E-value=16 Score=21.97 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=19.9
Q ss_pred hhhchHHHHHHHHHHHHHHHHH
Q 023314 106 LLSSVSSILSTIIGVHFGHVII 127 (284)
Q Consensus 106 llstlpai~~~l~G~~aG~~L~ 127 (284)
-|||-|-+++..++..||.++.
T Consensus 7 ylstAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998874
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.88 E-value=1.7e+02 Score=23.44 Aligned_cols=75 Identities=12% Similarity=0.216 Sum_probs=35.7
Q ss_pred CCCCcchhhchHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHH---Hhhhc-CCcCccccCCChhHHHHH
Q 023314 100 PFEPEGLLSSVSSILSTIIGVHFGHVIIHT-KGHLARLKQWVTMGFALLIFGL---TLHFT-NAIPLNKQLYTLSYVCVT 174 (284)
Q Consensus 100 ~~DPEGllstlpai~~~l~G~~aG~~L~~~-~~~~~~l~~l~~~G~~ll~~G~---~~~~~-g~~PInK~LWT~SfvL~t 174 (284)
+.||.++ ..+..++....|+....-.+.- ++++++.++++...+++.++=. ..++. ..+.++.+...++|.+.|
T Consensus 121 ~~~~~~l-pllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 4566543 3444445555555544333222 2233344444444333332222 22321 246678888877777766
Q ss_pred h
Q 023314 175 S 175 (284)
Q Consensus 175 ~ 175 (284)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 5
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=18.85 E-value=2.1e+02 Score=22.62 Aligned_cols=27 Identities=4% Similarity=-0.234 Sum_probs=17.5
Q ss_pred chhhchHHHHHHHHHHHHHHHHHhccc
Q 023314 105 GLLSSVSSILSTIIGVHFGHVIIHTKG 131 (284)
Q Consensus 105 Gllstlpai~~~l~G~~aG~~L~~~~~ 131 (284)
+...++..+.........|.+..+..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~~~~ 314 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGWMSDKVFR 314 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred hhhhhcchhhhhhhhhhhhhhhhhccc
Confidence 566777777666666666766655443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=17.83 E-value=1.8e+02 Score=23.04 Aligned_cols=27 Identities=22% Similarity=0.080 Sum_probs=23.0
Q ss_pred cchhhchHHHHHHHHHHHHHHHHHhcc
Q 023314 104 EGLLSSVSSILSTIIGVHFGHVIIHTK 130 (284)
Q Consensus 104 EGllstlpai~~~l~G~~aG~~L~~~~ 130 (284)
-|++.++..+...+.....|.+..+..
T Consensus 61 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 61 LGFALSGISIAYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 388999999999998999999887764
No 5
>d1mxga1 b.71.1.1 (A:362-435) Bacterial alpha-Amylase {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=11.47 E-value=13 Score=24.53 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=15.5
Q ss_pred CCCChhhhhhhhhcCCCcccC
Q 023314 49 PPCNAVGYIDRKVLGINHMYH 69 (284)
Q Consensus 49 ~~~N~~~~iDr~~lg~~Hly~ 69 (284)
-.+|+.+|+|+.+=.....|-
T Consensus 31 ytgnlggwvdk~v~~~gwv~l 51 (74)
T d1mxga1 31 YTGNLGGWVDKRVDSSGWVYL 51 (74)
T ss_dssp SSCTTSSCCEEECCTTSEEEE
T ss_pred hcCCccceeeeeeccCCeEEE
Confidence 357999999999875555553
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=10.88 E-value=1.5e+02 Score=22.72 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.3
Q ss_pred chhhchHHHHHHHHHHHHHHHHHhccc
Q 023314 105 GLLSSVSSILSTIIGVHFGHVIIHTKG 131 (284)
Q Consensus 105 Gllstlpai~~~l~G~~aG~~L~~~~~ 131 (284)
|++.++..+...+.....|.+..+..+
T Consensus 46 g~i~s~~~l~~~i~~~~~G~l~Dr~gr 72 (417)
T d1pv7a_ 46 GIIFAAISLFSLLFQPLFGLLSDKLGL 72 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 889999999999999999999877643
No 7
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=7.41 E-value=41 Score=24.36 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=9.6
Q ss_pred CCCCCcchhhch
Q 023314 99 APFEPEGLLSSV 110 (284)
Q Consensus 99 ~~~DPEGllstl 110 (284)
.-|||||+++.+
T Consensus 108 ~LyD~~g~~~~l 119 (125)
T d1knya2 108 PIYDSGGYLEKV 119 (125)
T ss_dssp EEEESSSHHHHH
T ss_pred EeecCcchHHHH
Confidence 358999998866
No 8
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=6.87 E-value=2.2e+02 Score=22.31 Aligned_cols=31 Identities=6% Similarity=-0.051 Sum_probs=22.2
Q ss_pred hhhchHHHHHHHHHHHHHHHHHhccchhHHH
Q 023314 106 LLSSVSSILSTIIGVHFGHVIIHTKGHLARL 136 (284)
Q Consensus 106 llstlpai~~~l~G~~aG~~L~~~~~~~~~l 136 (284)
+++.+.++.++.+|+.++..+.+.+...++.
T Consensus 84 ~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~ 114 (290)
T d2r6gg1 84 KVAGISAIGIVALSTTCAYAFARMRFPGKAT 114 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTTSHH
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhhhhhHHH
Confidence 3455667778889999999997766544444
No 9
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.64 E-value=6.1e+02 Score=19.66 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=12.8
Q ss_pred CcCccccCCChhHHHHHh
Q 023314 158 AIPLNKQLYTLSYVCVTS 175 (284)
Q Consensus 158 ~~PInK~LWT~SfvL~t~ 175 (284)
.+.++-+.+.++|.+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 466777777777777665
No 10
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.91 E-value=72 Score=18.00 Aligned_cols=14 Identities=57% Similarity=0.724 Sum_probs=11.3
Q ss_pred CCChhhhhhhhhcC
Q 023314 50 PCNAVGYIDRKVLG 63 (284)
Q Consensus 50 ~~N~~~~iDr~~lg 63 (284)
+.|+-+||||.=|+
T Consensus 14 DkNaDGyiD~eEl~ 27 (34)
T d1ctda_ 14 DKNADGYIDIEELG 27 (34)
T ss_dssp CCSSSSCBCHHHHH
T ss_pred ccCCcccccHHHHH
Confidence 46889999997665
Done!