BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023316
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + G + + K L + G R+ +IWD G
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 122
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 123 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 122
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 123 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 80 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 136
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 137 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
+KI L+GD +GK+ +V++V ++ S + G++ KT+ + G ++ IWD G
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A+ I+ ++D+T T +I W+ + N A +L+G K D R
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ A Q A AK + SSA ++ NVN+IF F +AKL
Sbjct: 124 V------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVG 156
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G R P+ + + A + ++D+T T +++ W E R+ +I + I D
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
D++ + A+ YA ++ A +SA + IN+N++F
Sbjct: 123 T----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 12/188 (6%)
Query: 79 AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLI 137
+GL +S + +G DS +KI L+GD +GK+ +V++V ++ S + G++
Sbjct: 2 SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 138 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197
KT+ + G ++ +WD G R + A+ I+ ++D+T T +I W+
Sbjct: 59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV 118
Query: 198 RKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256
+ N A +L+G K D R+ A Q A AK + SSA ++ NVN+I
Sbjct: 119 NEHANDEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKNDDNVNEI 172
Query: 257 FKFIMAKL 264
F F +AKL
Sbjct: 173 F-FTLAKL 179
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
KI L+GD +GK+ +V++V ++ S + G++ KT+ + G ++ IWD G R
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 219
+ A I+ ++D+T T +I W+ + N A +L+G K D R+
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
A Q A AK + SSA ++ NVN+IF F +AKL
Sbjct: 125 ------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
+KI L+GD +GK+ +V++V ++ S + G++ KT+ + G ++ +WD G
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A+ I+ ++D+T T +I W+ + N A +L+G K D R
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 127
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ A Q A AK + SSA ++ NVN+IF F +AKL
Sbjct: 128 V------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 166
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
KI L+GD +GK+ +V++V ++ S + G++ KT+ + G ++ +WD G R
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 219
+ A I+ ++D+T T +I W+ + N A +L+G K D R+
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
A Q A AK + SSA ++ NVN+IF F +AKL
Sbjct: 125 ------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 5/163 (3%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWD 154
S L LK+ LLGD +GK+S + ++V + + ++ G + + KT+ Q F IWD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214
G R P+ + + A + ++D+T T +++ W E R+ +I + I
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
D D++ + A+ YA ++ A +SA + IN+N++F
Sbjct: 122 DLT----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 160
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 67
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 213
G R P+ + A A + +FD+T++ + W E + + N + L G K
Sbjct: 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 264
D D + A A+ YA+ + LFF +SA NV +IF I +L
Sbjct: 128 DLL-----DARKVTAEDAQTYAQ--ENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGAR 147
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 2 STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIP 206
I +WD G R +P +D+ A + ++D+T+ + W + R + I
Sbjct: 62 IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 207 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 122 MLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176
Query: 267 LPWTVKRN 274
+ T R+
Sbjct: 177 MESTQDRS 184
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 126 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ ++GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ ++GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 81/172 (47%), Gaps = 13/172 (7%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIW 153
+ K+ LLG+ +GK+S V+++V + QE ++Q A + +T+ + + F IW
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAA---FLTQTVCLDDTTVKFEIW 59
Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTK 212
D G R P+ + A A + ++D+T+ T W E ++ I I L G K
Sbjct: 60 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 119
Query: 213 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D + + Q +A+AYA +SA +NVN+IF I KL
Sbjct: 120 ADLASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ ++GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P+ + A A + ++D+T+ T W E ++ I I L G K D
Sbjct: 61 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ + Q +A+AYA +SA +NVN+IF I KL
Sbjct: 121 ASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 5 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 65 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 125 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 10/180 (5%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR 147
S Y D DL+ KI L+GD +GK++ + ++ NE S G+ +TL ++G R
Sbjct: 3 SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI 207
I IWD G R + AV L ++D++ + + W SE R+ + +
Sbjct: 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAV 121
Query: 208 -LIGTKFD-DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
LIG K D +R P +++ +A+ + +SA ++ NV+K F+ ++ ++
Sbjct: 122 GLIGNKSDLAHLRAVP------TEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 7/188 (3%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGAR 147
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 5 STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIP 206
+ +WD G R +P +D+ + ++D+T+ + W + R + I
Sbjct: 65 VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 124
Query: 207 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 125 MLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179
Query: 267 LPWTVKRN 274
+ T R+
Sbjct: 180 MESTQDRS 187
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P+ + A A + ++D+T+ T W E ++ I I L G K D
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ + Q +A+AYA +SA +NVN+IF I KL
Sbjct: 123 ASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 7/171 (4%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
S L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ I +WD
Sbjct: 2 SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 213
G R +P +D+ A + ++D+T+ + W + R + I +L+G K
Sbjct: 62 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 122 D----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 5/166 (3%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
S + LK+ LLGD +GK+S V ++V + + ++ G + + KT+ F IWD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214
G R P+ + + A + ++D+T + + ++ W E ++ I + I
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
D D++ A+ YA+++ A + +SA + IN+ ++F+ I
Sbjct: 139 DL----SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 123 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 7/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ K+ LLG+ +GK+S V+++V G E G + +T+ + + F IWD
Sbjct: 5 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 65 GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ D Q +A++YA +SA + NVN+IF I KL
Sbjct: 125 ANKRAVDFQ-----EAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
+P D +ARA+A+ + +SA + NV F+ I+ +++ +
Sbjct: 141 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
V+ K+ L+GD +GKT +V++ + G++ NK L V G ++ +WD
Sbjct: 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 214
G R +DA A+L ++D+T++ + ++I W +E ++ Q + + L+G K D
Sbjct: 69 GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 6/161 (3%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ ++GD +GK+S ++++ N S + G++ +T+ + G ++ IWD G
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219
R + ++ ++D+TS + ++ W E + IL+G K DD
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDD---- 125
Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
P+ + A +A M LF +SA N+NV ++F I
Sbjct: 126 -PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI ++G+ +GKTSF+ +Y + + + G++ KT+ RI IWD G
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVR 218
R + A+ + M+D+T+ + N++ W ++ + ++ A +L+G K D
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 121
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
D + + + R A + F +SA NINV + F+
Sbjct: 122 -MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 160
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
+P D +ARA+A+ + +SA + NV F+ I+ +++
Sbjct: 150 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 8/180 (4%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQG 145
T SSG D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 2 TMSSG-DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTA 204
+ +WD G R +P +D+ + ++D+T+ + + W + R +
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120
Query: 205 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
I +L+G K D D + + AK + +SA NV ++F+ + A L
Sbjct: 121 IIMLVGNKTD-----LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 154
S + K+ LLG+ +GK+S V+++V G E G + +++ + + F IWD
Sbjct: 4 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 63
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKF 213
G R P+ + A A + ++D+T++ T W E ++ +I I L G K
Sbjct: 64 TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKA 123
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKR 273
D + + + +A+AYA +SA +NVN +F I K LP + +
Sbjct: 124 DLANKRMVEYE-----EAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK---LPKSEPQ 175
Query: 274 NL 275
NL
Sbjct: 176 NL 177
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 9/161 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GKTSF+ +Y + + + G++ KT+ RI IWD G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFD-DFV 217
R + A+ L M+D+ ++ + ++ W ++ + ++ A IL+G K D +
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
R+ P A R A + F +SA NINV ++F+
Sbjct: 143 RVVP------AEDGRRLADDLGFEFFEASAKENINVKQVFE 177
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT V ++ G ER G++ KTL +QG R+ IWD G
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD 214
R + A + +D+T R + S+ W + RK+ + +LIG K D
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 146
D D D + +K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 5 DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 147 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARK 199
++ +WD G R +DA+ L MFDLTS+ + ++ W S +A
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 200 WNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK---- 255
+ + +LIG K D PD + QAR A+ F +SA NV K
Sbjct: 124 YCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 256 IFKFIMAKL 264
+ IM ++
Sbjct: 179 LLDLIMKRM 187
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
+P D +ARA+A+ + +SA + NV F+ I+ +++
Sbjct: 150 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
+P D +ARA+A+ + +SA + NV F+ I+ +++ +
Sbjct: 129 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDD 215
G R +P +D+ + ++D+T+ + W + R + I +L+G K D
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD- 122
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNL 275
L Q +I R AK + +SA NV ++F+ + A L + T R+
Sbjct: 123 ---LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSR 178
Query: 276 TIGEPIID 283
E +ID
Sbjct: 179 ---EDMID 183
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
+P D +ARA+A+ + +SA + NV F+ I+ +++
Sbjct: 132 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 146
D D D + +K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 5 DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 147 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARK 199
++ +WD G R +DA+ L MFDLTS+ + ++ W S +A
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 200 WNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK---- 255
+ + +LIG K D PD + QAR A+ F +SA NV K
Sbjct: 124 YCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 256 IFKFIMAKL 264
+ IM ++
Sbjct: 179 LLDLIMKRM 187
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 11/169 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
+P D +ARA+A+ + +SA + NV F+ I+ +++
Sbjct: 126 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD G
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDDFVR 218
R +P +D+ + ++D+T+ + W + R + I +L+G K D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD---- 117
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 118 LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 6/170 (3%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156
+ S+K+ LLG+ +GK+S V+++V N+ E G + + + + + F IWD
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 215
G R P ++A A L ++D+T + W E + I I L+G K D
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID- 119
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKL 264
L + +A + K LFF +SA NVN +F I K+
Sbjct: 120 --XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD G
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDDFVR 218
R +P +D+ + ++D+T+ + W + R + I +L+G K D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTD---- 118
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
L Q TI + AK + +SA NV ++F+ + + L
Sbjct: 119 LADKRQITIE-EGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 83/173 (47%), Gaps = 16/173 (9%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI ++GD +GKT ++ G +R+ G++ + + + G RI +WD G
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 160 R-SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFD-- 214
R V ++ A++F++D+T+ + +S+ W E ++ IP IL+G K D
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH---NINVNKIFKFIMAKL 264
+++P DL A+ +A LF +SA + N +V IF + KL
Sbjct: 141 SAIQVPTDL-------AQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 101 LKISLLGDCQIGKTSFVVKY-VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI ++GD +GKT ++ G +R+ G++ + + + G RI +WD G
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 160 R-SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFD-- 214
R V ++ A++F++D T+ + +S+ W E ++ IP IL+G K D
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH---NINVNKIFKFIMAKL 264
+++P DL A+ +A LF +SA + N +V IF + KL
Sbjct: 150 SAIQVPTDL-------AQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 22/181 (12%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA--------RIA 149
+K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QG ++
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARKWNQTAIPI 207
+WD G R +DA+ L MFDLTS+ + ++ W S +A + + +
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK----IFKFIMAK 263
LIG K D PD + QAR A F +SA NV K + IM +
Sbjct: 146 LIGNKAD-----LPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
Query: 264 L 264
+
Sbjct: 201 M 201
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI ++G+ +GKTSF+ +Y + + + G++ KT+ RI IWD G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVR 218
R + A + +D+T+ + N++ W ++ + ++ A +L+G K D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 124
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
D + + + R A + F +SA NINV + F+
Sbjct: 125 -XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 19/179 (10%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA 146
G TD D L K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 147 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--E 196
++ +WD G R +DA L FDLTS+ + ++ W S +
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 197 ARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255
A + + +LIG K D PD + QAR A+ F +SA NV K
Sbjct: 121 ANAYCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 19/179 (10%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLM--VQGA 146
G TD D L K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 147 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--E 196
++ +WD G R +DA L FDLTS+ + ++ W S +
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 197 ARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255
A + + +LIG K D PD + QAR A+ F +SA NV K
Sbjct: 121 ANAYCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ ++G+ +GKTSF+ +Y + + + G++ KT+ R+ IWD G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFD-DFV 217
R + A+ + M+D+T+ + N++ W ++ + ++ A IL+G K D +
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
R+ P + + A+ + F +SA NI+V + F+
Sbjct: 144 RVVP------TEKGQLLAEQLGFDFFEASAKENISVRQAFE 178
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 7/165 (4%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 160
K+ LG+ +GKTS + ++ + + + Q G++ ++KTL + + +WD G R
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA-RKWNQTAIPILIGTKFDDFVRL 219
+P +D+ A + ++D+T+R + + W + + + I L+G K D
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD----- 117
Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
DL+ + A+ +SA N+ +FK +KL
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 14/181 (7%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIA 149
GYD D KI L+GD +GK++ + ++ +E S G+ +T+ V+ +I
Sbjct: 4 GYDYD---YLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIK 60
Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-L 208
IWD G R + AV L ++D++ + + W +E R+ + + L
Sbjct: 61 AQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGL 120
Query: 209 IGTKFD--DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
IG K D +P D +A+ +A + +SA ++ NV+K F+ ++ +F
Sbjct: 121 IGNKSDLAHLRAVPTD-------EAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQ 173
Query: 267 L 267
+
Sbjct: 174 M 174
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 10/171 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGAR-IAFSIWDVGGD 158
KI L+GD +GK++ + ++ +E S G+ K++ ++ + I IWD G
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD-DF 216
R + AV L ++D+T + + +I W E R + I I L+G K D
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
+R+ D A YAK K +SA NV F ++ +++N+
Sbjct: 128 LRVIND------NDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNV 172
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
+ KI L GD +GK+SF+++ NE +E G++ KTL+V G R +WD G
Sbjct: 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 214
R + A +L ++D+T + +I W +PI L+G K D
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 9/168 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GKT+ + ++ NE S G+ +T+M+ A + IWD G
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFD-DFV 217
R + AV L +FDLT T + W E + T + +L+G K D
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
R P +AR +A+ +SA + NV F+ ++ ++F
Sbjct: 146 REVP------TEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 9/168 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GKT+ + ++ NE S G+ +T+M+ A + IWD G
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFD-DFV 217
R + AV L +FDLT T + W E + T + +L+G K D
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
R P +AR +A+ +SA + NV F+ ++ ++F
Sbjct: 131 REVP------TEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++G GK+ + +++ N+ ++ S G+ ++ + V G + IWD G
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A L ++D+TSR T NS+ W ++AR + + IL G K D
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD---- 141
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
L P+ + T +R +A+ + +SA NV + F
Sbjct: 142 LDPEREVTFLEASR-FAQENELMFLETSALTGENVEEAF 179
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
L++ ++G +GKTS + ++ + E G++ KT+ ++G +I IWD G
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 160 RSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
R F+ + A + A I+ ++D+T + T + + W K+ ++ A +L+G K D
Sbjct: 87 R-FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD--- 142
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIF 257
D + T Q +A+ + F +SA N NV++IF
Sbjct: 143 -CETDREIT-RQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 13/190 (6%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
V LK+ +LGD +GKTS + +YV + + G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 211
R F + +A + A + +FD+T+ T ++ W E A + P +++G
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 271
K D L T QA Y+K F +SA INV + F+ I V
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 272 KRNLTIGEPI 281
+ EPI
Sbjct: 181 ELYNEFPEPI 190
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 8/176 (4%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIA 149
G D D + KI L+G+ +GKT V ++ G G++ + KT+ + G ++
Sbjct: 18 GSMEDYDFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK 76
Query: 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPIL 208
IWD G R + A A++ +D+T + + W E ++ + I +L
Sbjct: 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 209 IGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+G K D R Q +A +++A +SA + NV K+F + +L
Sbjct: 137 VGNKIDLAERREVSQQ-----RAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++G+ GK+ + +++ + ++ S G+ +K + V G + IWD G
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A L ++D+TSR T N++ W ++AR +Q + IL G K D
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 126
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
L D + T +R +A+ + +SA NV + F K+ N
Sbjct: 127 LDADREVTFLEASR-FAQENELMFLETSALTGENVEEAFVQCARKILN 173
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A I+ ++D+T + + N++ W E ++ ++ +L+G K D +
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D T A+ +A ++ +SA + NV + F + A++
Sbjct: 146 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A I+ ++D+T + + N++ W E ++ ++ +L+G K D +
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D T A+ +A ++ +SA + NV + F + A++
Sbjct: 127 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A I+ ++D+T + + N++ W E ++ ++ +L+G K D +
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D T A+ +A ++ +SA + NV + F + A++
Sbjct: 127 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L +LKI ++G+ +GK+S ++++ + + L G++ KT+ V G + +IWD
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFD 214
G R P + A ++ ++D+T R T + W +E + + L+G K D
Sbjct: 73 GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 7/165 (4%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G R
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 219
+ A I+ ++D+T + + N++ W E ++ ++ +L+G K D +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D T A+ +A ++ +SA + NV + F + A++
Sbjct: 121 VVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A I+ ++D+T + + N++ W E ++ ++ +L+G K D +
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D T A+ +A ++ +SA + NV + F + A++
Sbjct: 137 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 72
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 73 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 133 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIA-FSIWDVGGD 158
LK+ +LGD +GKTS + +YV ++ + + G + + K + V G ++A +WD G
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 159 SRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGTK 212
R F + +A + A + ++D+T+ + +I W E A + P +++G K
Sbjct: 69 ER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 213 FDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIFKFI 260
D + A+ AK++ LF +SA + INV+ F+ I
Sbjct: 128 ID----AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A I+ ++D+T + + N++ W E ++ ++ +L+G K D +
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D T A+ +A ++ +SA + NV + F + A++
Sbjct: 129 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 13/190 (6%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
V LK+ +LGD +GKTS + +YV + + G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 211
R F + +A + A + +FD+T+ T ++ W E A + P +++G
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 271
K D R T QA Y+K F +SA INV + F+ I V
Sbjct: 126 KIDFENRQVA----TKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 272 KRNLTIGEPI 281
+ EPI
Sbjct: 181 ELYNEFPEPI 190
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK ++++ + E + G++ +T+ + G I IWD G
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A I+ ++D+T + + N++ W E ++ ++ +L+G K D +
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D T A+ +A ++ +SA + NV + F + A++
Sbjct: 137 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A I+ ++D+T + + N++ W E ++ ++ +L+G K D +
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D T A+ +A ++ +SA + NV + F A++
Sbjct: 154 KVVDY-----TTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
V LK+ +LGD +GKTS + +YV + + G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 211
R F + +A + A + +FD+T+ T ++ W E A + P +++G
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260
K D L T QA Y+K F +SA INV + F+ I
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTI 169
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 13/190 (6%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGG 157
V LK+ +LGD +GKTS + +YV + + G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 158 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 211
R F + +A + A + +FD+T+ T ++ W E A + P +++G
Sbjct: 67 LER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 271
K D L T QA Y+K F +SA INV + F+ I V
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 272 KRNLTIGEPI 281
+ EPI
Sbjct: 181 ELYNEFPEPI 190
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 68 GQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 68 GQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 72
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 73 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 132
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 133 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 8/171 (4%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGG 157
V K+ L+GD GKT+FV +++ E E+ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 60
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 61 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 120
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 121 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++G+ GK+ + +++ + ++ S G+ +K + V G + IWD G
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A L ++D+TSR T N++ W ++AR +Q + IL G K D
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 127
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
L D + T +R +A+ + +SA +V + F K+ N
Sbjct: 128 LDADREVTFLEASR-FAQENELMFLETSALTGEDVEEAFVQCARKILN 174
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 71/171 (41%), Gaps = 8/171 (4%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGG 157
V K+ L+GD GKT+FV +++ E E+ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 19/182 (10%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQ------- 144
D D D + +K LGD +GKTS + +Y G + + G++ K ++ +
Sbjct: 5 DGDYDYL-IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 145 ---GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201
G RI +WD G R +DA+ L +FDLT+ + ++ W S+ +
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 202 QTAIP--ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 259
+ P +L G K D D + +AR A+ F +SA + N++ +
Sbjct: 124 YSENPDIVLCGNKSD-----LEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM 178
Query: 260 IM 261
++
Sbjct: 179 LL 180
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 3/127 (2%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIA 149
+G + + S+K+ L+GD GKTS ++ + S L V+G +
Sbjct: 24 AGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH 83
Query: 150 FSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPI 207
IWD G +D + P+ DA +L FD+TS + ++I WY E + + I
Sbjct: 84 LHIWDTAGQD-DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII 142
Query: 208 LIGTKFD 214
++G K D
Sbjct: 143 VVGCKTD 149
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 68 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 8/175 (4%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIW 153
+ ++ + K+ L+GD GKT+FV +++ E E+ + G+ + + I F +W
Sbjct: 7 NGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVW 66
Query: 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF 213
D G + +A + MFD+TSR T ++ W+ + + + +L G K
Sbjct: 67 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 126
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
D R + + + + + SA N N K F ++ KL P
Sbjct: 127 DVKER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 174
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 63
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 64 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 123
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 124 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 168
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 7/167 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++GD +GK+ + ++ + G+ + + V G +I IWD G
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A L ++D+T R T N + W ++AR N + ILIG K D +
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD--LE 148
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
D+ + +A+ +A+ +SA NV F K++
Sbjct: 149 AQRDVTY---EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 7/167 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++GD +GK+ + ++ + G+ + + V G +I IWD G
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A L ++D+T R T N + W ++AR N + ILIG K D +
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD--LE 133
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
D+ + +A+ +A+ +SA NV F K++
Sbjct: 134 AQRDVTY---EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 11 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 69
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 70 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 129
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 130 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 174
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A I+ ++D+T + + ++ W E ++ ++ +L+G K D +
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D T A+ +A ++ +SA + NV + F + A++
Sbjct: 130 KVVD-----NTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++G+ GK+ + +++ + ++ S G+ +K + V G + IWD G
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A L ++D+TSR T N++ W ++AR +Q + IL G K D
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 124
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266
L D + T +R +A+ + +SA +V + F K+ N
Sbjct: 125 LDADREVTFLEASR-FAQENELMFLETSALTGEDVEEAFVQCARKILN 171
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + E + G++ +T+ + G I IWD G
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + A I+ ++D+T + + ++ W E ++ ++ +L+G K D +
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D T A+ +A ++ +SA + NV + F + A++
Sbjct: 130 KVVD-----NTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 10/172 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGAR--IAFSIWDVG 156
V K+ L+GD GKT+FV +++ E E+ +A L + L+ R I F++WD
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRGPIKFNVWDTA 67
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G + A + FD+TSR T ++ W+ + + + +L G K D
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 127
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + ++ + + + SA N N K F ++ KL P
Sbjct: 128 DR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
LK+ LLGD +GK+S + +YV N+ ++ G+ +N+ L V G + IWD G
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 214
R + A L F + R + ++ W E + P +++G K D
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 8/174 (4%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWD 154
++ + K+ L+GD GKT+FV +++ E E+ + G+ + + I F +WD
Sbjct: 1 GEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWD 60
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214
G + +A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 61 TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD 120
Query: 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + + + + + SA N N K F ++ KL P
Sbjct: 121 VKER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 167
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 8/173 (4%)
Query: 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDV 155
++ + K+ L+GD GKT+FV +++ E E+ + G+ + + I F +WD
Sbjct: 1 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215
G + +A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 61 AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268
R + + + + + SA N N K F ++ KL P
Sbjct: 121 KER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 166
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
K+ L+GD Q GKT+ + + + L + R+ S+WD G S
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 71
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD----- 214
+D+V P+ D+ A+L FD++ T++S + W +E + + +LIG K D
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 131
Query: 215 -DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 268
+ L Q I+ Q A AK + A ++ S+ T +++ IF+ N P
Sbjct: 132 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
K+ L+GD Q GKT+ + + + L + R+ S+WD G S
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 70
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD----- 214
+D+V P+ D+ A+L FD++ T++S + W +E + + +LIG K D
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 130
Query: 215 -DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 268
+ L Q I+ Q A AK + A ++ S+ T +++ IF+ N P
Sbjct: 131 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 12/178 (6%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
K+ L+GD Q GKT+ + + + L + R+ S+WD G S
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSG-SPY 87
Query: 162 FDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD----- 214
+D+V P+ D+ A+L FD++ T++S + W +E + + +LIG K D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 147
Query: 215 -DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 268
+ L Q I+ Q A AK + A ++ S+ T +++ IF+ N P
Sbjct: 148 STLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 9/165 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K +GD +GKT ++ Y GN + + ++V G+ + +WD G
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPI-LIGTKFD---- 214
P++ + A L F L S+ + +I W E + + IPI L+GTK D
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHY-APGIPIVLVGTKLDLRDD 125
Query: 215 -DFVRLPPDLQWTIATQARAYAKAMKATLFFS-SATHNINVNKIF 257
F++ P Q K + A + S+ NV +F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
V KI ++GD Q GKT+ + + + + + + RI S+WD G
Sbjct: 22 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 80
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
S +D+V P++ D+ A+L FD++ TL+S++ W E +++ +L+G K D
Sbjct: 81 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 138
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GK+ ++++ + + G++ KT+ + G + IWD G
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + + I+ ++D+T + + N + W E ++ T + +L+G K D ++
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 139
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
+++ + A+ +A A K +SA + NV F
Sbjct: 140 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 175
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
V KI ++GD Q GKT+ + + + + + + RI S+WD G
Sbjct: 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 85
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
S +D+V P++ D+ A+L FD++ TL+S++ W E +++ +L+G K D
Sbjct: 86 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 143
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++GD +GK+ ++++ + + G+ + + + G +I IWD G
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG-Q 69
Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 217
SF + + + A L ++D+T R T N + W +AR+ N + +LIG K D
Sbjct: 70 ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLES 129
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
R + + A+A+ +SA NV + F
Sbjct: 130 RREVKKE-----EGEAFAREHGLIFMETSAKTASNVEEAF 164
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
V KI ++GD Q GKT+ + + + + + + RI S+WD G
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG- 64
Query: 159 SRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
S +D+V P++ D+ A+L FD++ TL+S++ W E +++ +L+G K D
Sbjct: 65 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 122
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GK+ ++++ + + G++ KT+ + G + IWD G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + + I+ ++D+T + + N + W E ++ T + +L+G K D ++
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 126
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
+++ + A+ +A A K +SA + NV F
Sbjct: 127 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 162
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 74/159 (46%), Gaps = 7/159 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+G+ +GK+ ++++ + + G++ KT+ + G + IWD G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218
R + + I+ ++D+T + + N + W E ++ T + +L+G K D ++
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 126
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
+++ + A+ +A A K +SA + NV F
Sbjct: 127 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 162
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 13 AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 71
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 128
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 22 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 80
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 137
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
V++K+ ++G+ +GK+S + +Y G + + G++ + + + V + +WD G
Sbjct: 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 158 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
FD + A + A A + +F T R + +I W + L+ K D
Sbjct: 64 -QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID-- 120
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263
D +A AK +K + +S ++NV+++FK++ K
Sbjct: 121 ---LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 7 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 65
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 66 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 122
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 150
G S + ++K ++GD +GK ++ Y N + + +MV G +
Sbjct: 1 GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 60
Query: 151 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPIL 208
+WD G +D + P++ L F L S + ++ WY E R IL
Sbjct: 61 GLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 119
Query: 209 IGTKFD 214
+GTK D
Sbjct: 120 VGTKLD 125
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV---QGARIAFSIWDV 155
++ KI L+GD +GKT+++ + + E++ A + +N + QG I F++WD
Sbjct: 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYN-ATVGAVNHPVTFLDDQGNVIKFNVWDT 68
Query: 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI 209
G + + A + FD+TSR T ++ W E + PI++
Sbjct: 69 AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 6 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 64
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 121
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 159
K ++GD +GK+ ++++ + + G+ + + + G +I IWD G
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 160 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
SF + + + A L ++D+T R T N + W +AR+ + + + I LIG K D
Sbjct: 82 -SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
R + + A+A+ +SA NV + F
Sbjct: 141 RRDVKRE-----EGEAFAREHGLIFMETSAKTACNVEEAF 175
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 88
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R +L+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 118
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R +L+GTK D
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + + + WY E R IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + + + WY E R IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + + + WY E R IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ WY E R +L+GTK D
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 214
R + + L F + + ++ W E + P +++G K D
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 214
R + + L F + + ++ W E + P +++G K D
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 8/165 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT + ++ + + + G++ +T+ + G RI IWD G
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 218
R + A+ I+ ++D+T+ + ++I W + + +++G K D
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD---- 122
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263
D + + A +SA NINV F F +A+
Sbjct: 123 -VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF-FTLAR 165
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 214
R + + L F + + ++ W E + P +++G K D
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K +GD +GKT ++ Y N + + ++V G + +WD G
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
P++ + A + F L S+ + ++ W E R + IL+GTK D
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 74/166 (44%), Gaps = 7/166 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK+ ++++ + S + G++ +T+ ++ + IWD G
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVR 218
R + A I+ ++D+T R + +++ W E ++ + +L+G K D +
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+ + + R A + +SA + NV + F + ++
Sbjct: 130 -----RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 8/165 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GKT + ++ + + + G++ +T+ + G RI IWD G
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 218
R + A+ I+ ++D+T+ + ++I W + + +++G K D
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD---- 124
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263
D + + A +SA NINV F F +A+
Sbjct: 125 -VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF-FTLAR 167
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K +GD +GKT ++ Y N + + ++V GA + +WD G
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
P++ + A + F L S+ + ++ W E + + +L+GTK D
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLD 123
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 5/173 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K +GD +GKT ++ Y N+ + + + V G + +WD G
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKF---DDF 216
P++ + A + F L S+ + +++ W E R++ +L+GTK DD
Sbjct: 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDK 129
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFS-SATHNINVNKIFKFIMAKLFNLP 268
L +TQ K + A + S+ NV +F + + P
Sbjct: 130 GYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 63/128 (49%), Gaps = 12/128 (9%)
Query: 96 SDLVSLKISLLGDCQIGKTS----FVVKYVGNEQERSLQMAGLNLINKTLMVQG-ARIAF 150
S + LKI +LGD GKTS F + G + ++++ GL+ + + + G +
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTI---GLDFFLRRITLPGNLNVTL 58
Query: 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA----IP 206
IWD+GG + + A +L ++D+T+ + ++ WY+ +K ++ + +
Sbjct: 59 QIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLV 118
Query: 207 ILIGTKFD 214
L+G K D
Sbjct: 119 ALVGNKID 126
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 150
G + + ++K ++GD +GKT ++ Y N + + +MV +
Sbjct: 1 GGGSGGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNL 60
Query: 151 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPIL 208
+WD G +D + P++ L F L S + ++ W+ E R + IL
Sbjct: 61 GLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL 119
Query: 209 IGTKFD 214
+GTK D
Sbjct: 120 VGTKLD 125
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ W+ E R + IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 118
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV + +WD G
Sbjct: 9 AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG-Q 67
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F L S + ++ W+ E R + IL+GTK D
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 124
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
+LKI ++GD +GKT ++ + E + + + + +WD G
Sbjct: 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG-Q 81
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ D+ +L F + +R + ++I W E + + TA +L+G K D
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
+LKI ++GD +GKT ++ + E + + + + +WD G
Sbjct: 22 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG-Q 80
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ D+ +L F + +R + ++I W E + + TA +L+G K D
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 22/136 (16%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N + + +MV G + +WD G
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG--------------------WYSEAR 198
+D + P++ V + D+TSR I WY E R
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 199 KWNQTAIPILIGTKFD 214
IL+GTK D
Sbjct: 124 HHCPNTPIILVGTKLD 139
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 206
I F IWD G R VP+ + A + +FD+++ TL+ W ++ K + I
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL-KISSNYII 150
Query: 207 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
IL+ K D + D+ + + YA+ +SA N+ IF + +++
Sbjct: 151 ILVANKIDKN-KFQVDI-----LEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+K L+GD +GKTS VV Y N + + + V G + + D G
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 214
FD + P+ + L F + S + ++ W E R A IL+GT+ D
Sbjct: 81 -FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSD 135
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 20/162 (12%)
Query: 70 SSPAPDTMEAGLVELSRTFSSGYDTDS------DLVSLKISLLGDCQIGKTSFVVKYVGN 123
SP P+ ++ G + + F S + S L +K+ L+GD GKTS + + +G
Sbjct: 5 ESPPPEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGE 64
Query: 124 E-QERSLQMAGLNLINKTL-MVQG-------ARIAFSIWDVGGDS-RSFDHVPIACKDAV 173
+ Q GLN++ K ++G F WD GG H + +V
Sbjct: 65 TFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSV 124
Query: 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215
+M L SR N W K+ + I++ K D+
Sbjct: 125 ---YMLLLDSRTDSNKHY-WLRHIEKYGGKSPVIVVMNKIDE 162
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 13/163 (7%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGAR---IAFSIWDVGG 157
++ LLGD +GKTS + G QER L + G ++ +TL V G + W+
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGK-QERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIP-ILIGTKFDD 215
+S+ + A + ++ + R + S + R+ +Q +P IL+G K D
Sbjct: 65 LDKSWSQ-ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA-D 122
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258
R + RA A +SAT NV ++F+
Sbjct: 123 LARCRE----VSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 22/176 (12%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
LK+ ++G+ GK++ V +Y+ QE S + K ++V G I D GG
Sbjct: 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG---RFKKEIVVDGQSYLLLIRDEGG 76
Query: 158 DSRSFDHVPIACKDAV---AILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTK 212
P + A A++F+F L + ++ ++ + N + +P +L+GT+
Sbjct: 77 --------PPELQFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQ 128
Query: 213 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS-ATHNINVNKIFKFIMAKLFNL 267
D P + ++AR + +K ++ + AT+ +NV ++F+ + K+ L
Sbjct: 129 -DAISAANPRV--IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
++++L+G GKT+FV V G E + G N+ V + IWD+GG
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGNVTIKIWDIGGQ 77
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSR 184
R C+ AI++M D R
Sbjct: 78 PRFRSMWERYCRGVNAIVYMIDAADR 103
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
L++ +LGD + GK+S + +++ G+ Q L+ K ++V G I + G
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQ--VLEKTESEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 160 RSFDHVPIACKD--AVAILFMFDLTSRCTLNSIV---GWYSEARKWNQTAIPI-LIGTKF 213
P A A A++F+F L + ++ G S R + + + L+GT+
Sbjct: 64 -----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ- 117
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSS-ATHNINVNKIFKFIMAKLFNL 267
D P + +ARA MK ++ + AT+ +NV+++F+ + K+ L
Sbjct: 118 DRISASSPRVVGD--ARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 101 LKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
L++ +LGD + GK+S + +++ G+ Q L+ K ++V G I + G
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQ--VLEKTESEQYKKEMLVDGQTHLVLIREEAG-- 63
Query: 160 RSFDHVPIACKD--AVAILFMFDLTSRCTLNSIV---GWYSEARKWNQTAIPI-LIGTKF 213
P A A A++F+F L + ++ G S R + + + L+GT+
Sbjct: 64 -----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ- 117
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSS-ATHNINVNKIFKFIMAKLFNL 267
D P + +ARA MK ++ + AT+ +NV+++F+ + K+ L
Sbjct: 118 DRISASSPRVVGD--ARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL 170
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ A + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155
S + ++K ++GD +GKT ++ Y N+ + T+M+ G ++D
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 156 GGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKF 213
G +D + P++ L F + S + ++ W E +L+GT+
Sbjct: 61 AG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 119
Query: 214 D 214
D
Sbjct: 120 D 120
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155
S + ++K ++GD +GKT ++ Y N+ + T+M+ G ++D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 156 GGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKF 213
G +D + P++ L F + S + ++ W E +L+GT+
Sbjct: 62 AG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 120
Query: 214 D 214
D
Sbjct: 121 D 121
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155
S + ++K ++GD +GKT ++ Y N+ + T+M+ G ++D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 156 GGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKF 213
G +D + P++ L F + S + ++ W E +L+GT+
Sbjct: 62 AG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 120
Query: 214 D 214
D
Sbjct: 121 D 121
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155
S + ++K ++GD +GKT ++ Y N+ + T+M+ G ++D
Sbjct: 6 SAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 156 GGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKF 213
G +D + P++ L F + S + ++ W E +L+GT+
Sbjct: 66 AG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 214 D 214
D
Sbjct: 125 D 125
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 4 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 62
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 63 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 119
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 13 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 71
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 72 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 128
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 5 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 63
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 7 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-Q 65
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 122
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 100 SLKISLLGDCQIGKTSFV-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
++++L+G GKT+FV V G E + G N+ T + +WD+GG
Sbjct: 31 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQ 86
Query: 159 SRSFDHVPIACKDAVAILFMFD 180
R C+ AI++M D
Sbjct: 87 PRFRSMWERYCRGVSAIVYMVD 108
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 3/126 (2%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 150
G S + ++K ++GD +GK ++ Y N+ + T+M+ G
Sbjct: 1 GSSGSSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 60
Query: 151 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPIL 208
++D G +D + P++ L F + S + ++ W E +L
Sbjct: 61 GLFDTAG-QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLL 119
Query: 209 IGTKFD 214
+GT+ D
Sbjct: 120 VGTQID 125
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 100 SLKISLLGDCQIGKTSFV-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
++++L+G GKT+FV V G E + G N+ T + +WD+GG
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQ 77
Query: 159 SRSFDHVPIACKDAVAILFMFD 180
R C+ AI++M D
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVD 99
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-L 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 8/159 (5%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
K+ +LG +GK++ V++V + K + V + I D G +
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 66
Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIP-ILIGTKFDDFVRL 219
+ K+ ++ +T++ T N + + + T +P IL+G K D
Sbjct: 67 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD----- 121
Query: 220 PPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIF 257
D + Q + A+ F SSA INVN+IF
Sbjct: 122 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G ++D G
Sbjct: 7 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG-L 65
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 122
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 8/159 (5%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
K+ +LG +GK++ V++V + K + V + I D G +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQF 64
Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IP-ILIGTKFDDFVRL 219
+ K+ ++ +T++ T N + + + T +P IL+G K D
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD----- 119
Query: 220 PPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIF 257
D + Q + A+ F SSA INVN+IF
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+M+ G + D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ VQ I+F++WDVGG
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNV----ETVQYKNISFTVWDVGGQD 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTL 187
R ++ ++F+ D R +
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDRSRI 100
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I ++G GKT+ + K E ++ G N+ VQ I+F++WDVGG R
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNV----ETVQYKNISFTVWDVGGQDR 56
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTL 187
++ ++F+ D R +
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRI 83
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ VQ I+F++WDVGG
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVET----VQYKNISFTVWDVGGQD 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTL 187
R ++ ++F+ D R +
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDRSRI 100
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
LK ++GD +GKT ++ Y + + ++ V G + ++D G
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG-QE 77
Query: 161 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + + + ++ W E +++ +LIGT+ D
Sbjct: 78 DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID 133
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 69/163 (42%), Gaps = 16/163 (9%)
Query: 102 KISLLGDCQIGKTSFVVKYVG----NEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
K+ +LG +GK++ V++V +E + +++ + K + V + I D G
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE----DSYRKQVEVDCQQCMLEILDTAG 60
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IP-ILIGTKFDD 215
+ + K+ ++ +T++ T N + + + T +P IL+G K D
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD- 119
Query: 216 FVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIF 257
D + Q + A+ F SSA INVN+IF
Sbjct: 120 ----LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKTS + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 17 EMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSR 184
+ ++ AI+F+ D R
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR 97
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++K ++GD +GKT ++ Y N+ + T+ + G ++D G
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAG-Q 61
Query: 160 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 214
+D + P++ L F + S + ++ W E +L+GT+ D
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 118
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 8/159 (5%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161
K+ +LG +GK++ V++V + K + V + I D G +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IP-ILIGTKFDDFVRL 219
+ K+ ++ +T++ T N + + + T +P IL+G K D
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD----- 119
Query: 220 PPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIF 257
D + Q + A+ F SSA INVN+IF
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
L++ +LG GKT+ + K+ G + + G N+ KTL +G ++ +IWDVGG
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKL--NIWDVGG 54
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ VQ I+F++WDVGG
Sbjct: 17 EMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNV----ECVQYCNISFTVWDVGGQD 72
Query: 160 R 160
R
Sbjct: 73 R 73
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
L++ +LG GKT+ + K+ G + + G N+ KTL +G ++ +IWDVGG
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKL--NIWDVGG 71
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
L++ +LG GKT+ + K+ G + + G N+ KTL +G ++ +IWDVGG
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKL--NIWDVGG 71
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
L++ +LG GKT+ + K+ G + + G N+ KTL +G ++ +IWDVGG
Sbjct: 16 ELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNI--KTLEHRGFKL--NIWDVGG 69
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
S KI++LG +GK+S +++V + S N K + V G + D G
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPI-LIGTKFDDFV 217
D + ++ +TS + I + + + IPI L+G K D +
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD--L 123
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
+ + + + +A A++ A SSA N +F+ I+
Sbjct: 124 HMERVISY---EEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
S KI++LG +GK+S +++V + S N K + V G + D G
Sbjct: 6 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 65
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPI-LIGTKFDDFV 217
D + ++ +TS + I + + + IPI L+G K D +
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD--L 123
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
+ + + + +A A++ A SSA N +F+ I+
Sbjct: 124 HMERVISY---EEGKALAESWNAAFLESSAKENQTAVDVFRRII 164
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 80 GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINK 139
GL+ + R S D + ++I LLG GKT+ + + + G N+ K
Sbjct: 2 GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--K 54
Query: 140 TLMVQGARIAFSIWDVGGDSR 160
++ QG ++ ++WD+GG +
Sbjct: 55 SVQSQGFKL--NVWDIGGQRK 73
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 80 GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINK 139
GL+ + R S D + ++I LLG GKT+ + + + G N+ K
Sbjct: 1 GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--K 53
Query: 140 TLMVQGARIAFSIWDVGGDSR 160
++ QG ++ ++WD+GG +
Sbjct: 54 SVQSQGFKL--NVWDIGGQRK 72
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
S KI++LG +GK+S +++V + S N K + V G + D G
Sbjct: 1 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 60
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPI-LIGTKFDDFV 217
D + ++ +TS + I + + + IPI L+G K D +
Sbjct: 61 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD--L 118
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
+ + + + +A A++ A SSA N +F+ I+
Sbjct: 119 HMERVISY---EEGKALAESWNAAFLESSAKENQTAVDVFRRII 159
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
S++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGG 55
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I F++WDVGG
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNICFTVWDVGGQD 72
Query: 160 R 160
R
Sbjct: 73 R 73
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG +
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNS 189
++ ++F+ D R +N
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRERVNE 85
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 7/164 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
S KI++LG +GK+S +++V + S N K + V G + D G
Sbjct: 4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQD 63
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPI-LIGTKFDDFV 217
D + ++ +TS + I + + + IPI L+G K D +
Sbjct: 64 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD--L 121
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
+ + + + +A A++ A SSA N +F+ I+
Sbjct: 122 HMERVISY---EEGKALAESWNAAFLESSAKENQTAVDVFRRII 162
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 220
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
+ ++ ++F+ D R +N
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNE 250
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
+ ++ ++F+ D R +N
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNE 102
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 16 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
+ ++ ++F+ D R +N
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNE 101
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
+++ +LG GKTS + + + ++ G+NL +TL Q I+F +WD+GG +
Sbjct: 23 IRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETL--QYKNISFEVWDLGGQTG 78
Query: 161 SFDHVPIACKDAVAILFMFDLTSR 184
+ D A++++ D T R
Sbjct: 79 VRPYWRCYFSDTDAVIYVVDSTDR 102
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 20 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQD 75
Query: 160 R 160
+
Sbjct: 76 K 76
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 77 MEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV--VKYVGNEQE 126
M AG ++L+ + S + D L +++ G+ GK+SF+ ++ +GNE+E
Sbjct: 46 MRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE 97
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I+F++WDVGG
Sbjct: 17 DVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNV----ETVEFRNISFTVWDVGGQD 72
Query: 160 R 160
+
Sbjct: 73 K 73
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 322 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 377
Query: 160 R 160
+
Sbjct: 378 K 378
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG +
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 56
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG +
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDK 56
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
+ ++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 2 MEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 56
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
+ ++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 1 MEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 55
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 13 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 68
Query: 160 R 160
+
Sbjct: 69 K 69
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQD 67
Query: 160 R 160
+
Sbjct: 68 K 68
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
++I ++G GKT+ + K E ++ G N+ V+ I F++WDVGG
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNICFTVWDVGGQD 84
Query: 160 R 160
+
Sbjct: 85 K 85
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
++I +LG GKT+ + K + ++ G N+ T + F++WDVGG
Sbjct: 13 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 66
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 112 GKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157
GKT+ + K+ G + + G N+ KTL +G ++ +IWDVGG
Sbjct: 30 GKTTILKKFNGEDVDTISPTLGFNI--KTLEHRGFKL--NIWDVGG 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,956,776
Number of Sequences: 62578
Number of extensions: 241067
Number of successful extensions: 947
Number of sequences better than 100.0: 240
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 241
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)